BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041780
         (422 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
 pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
          Length = 219

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 22/93 (23%)

Query: 202 SPDDYTTAQIWLKGGPGDNFESVEGGWVVNPKLY-GDKLTRLFVYWTKDSYKSTGCFDAI 260
           +P  +   +++ KG P   +  V   W   PKLY GD+ T L      D Y+        
Sbjct: 34  TPGAFELERLFWKGSP--QYTHVNEVW---PKLYIGDEATAL------DRYRLQK----- 77

Query: 261 CSGFVQTGQVALGAAIGPWSISEGPQYYLPVGI 293
            +GF       L AA G W++  GP YY  + I
Sbjct: 78  -AGFTHV----LNAAHGRWNVDTGPDYYRDMDI 105


>pdb|1MHM|A Chain A, Crystal Structure Of S-Adenosylmethionine Decarboxylase
           From Potato
          Length = 288

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 154 THSKFESI--NNKTIHLGPLVDRSAAVLVTVGFNYIGAQGDI 193
           T++ FES+  N KT+ LGPLV+R  A      F+ +    D+
Sbjct: 185 TYASFESVGYNPKTMELGPLVERVLACFEPAEFS-VALHADV 225


>pdb|3TAW|A Chain A, Crystal Structure Of A Hypothetical Glycoside Hydrolase
           (Bdi_3141) From Parabacteroides Distasonis Atcc 8503 At
           1.70 A Resolution
          Length = 356

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 108 QKSGSCPNGTVPIRRIRRQDLLRASSLQQFGRKVPEVSYAANR------------TDATH 155
           Q    CP GT   R    +D        Q+ RKVP ++ A ++              A +
Sbjct: 109 QAENECPGGTEDPRIAXTEDGTYVLLYTQWNRKVPRLAVATSKDLKHWTKFGPAFEKAYN 168

Query: 156 SKFESINNKTIHLGPLVDRSAAVLVTVGFNYIGAQGDINVW 196
            KF+    K+  L   +     V+  V   Y    G+ NV+
Sbjct: 169 GKFKDEATKSASLVTTLKGDKQVIAKVNGKYFXYWGEKNVY 209


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,225,821
Number of Sequences: 62578
Number of extensions: 652801
Number of successful extensions: 1309
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 8
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)