BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041781
(418 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/438 (24%), Positives = 188/438 (42%), Gaps = 63/438 (14%)
Query: 25 LRYTSSEASCIYRVPQTRRRFHPSDYTPIMVSIGPLHHGKQELKPMEEHKLRYLHHFL-- 82
L E+ CI+RVP++ +P Y P +VSIGP H+G++ L+ +++HK R L FL
Sbjct: 38 LESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDE 97
Query: 83 -QRTQVSMAHFLAFIQIKETKLRNYYADTIDLESDDFITMILVDAVFLIELFLRNGSSDF 141
++ V + + E K+R Y++ + D + M+++D F++ +FL S +
Sbjct: 98 AKKKDVEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLI-MSGNI 155
Query: 142 ITDDDPLFDKSRWTFLTVHMRFDLYLEENQLPFFILSELFDLAKTKTRNGDIYMGISL-M 200
+DP+F +L ++ DL L ENQ+PFF+L L+ +K +G+S +
Sbjct: 156 ELSEDPIFS---IPWLLSSIQSDLLLLENQVPFFVLQTLYVGSK---------IGVSSDL 203
Query: 201 TFICKWFSAEPGLPKINAESLTGVQFS--EVKHFLDLVILCLHSPQPPESRAQS------ 252
I F P I+ E + + KH LDL+ +A S
Sbjct: 204 NRIAFHFFKNP----IDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQ 259
Query: 253 --KFSYRNMP-----------GAKELYRAGVEF--KSGTHENQLDIKFCKGTLEIPFFGL 297
+ N+P AK L G++F + ++ L+++ K L+IP
Sbjct: 260 LHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRF 319
Query: 298 FDITERVYRNLLMFENMHVYPVKYFNDYIILMSSFLVTPKDADLLVQNEII---GLGDSE 354
+ N + FE + YI+ M L +D L +++I G +
Sbjct: 320 DGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNN 379
Query: 355 LLSTVFHSLVKD--------YLQAFCKSP---AHRWK----AILDQNYFNTPWSTTSVIA 399
+S F ++ KD YL K +W A +F +PW+ S A
Sbjct: 380 EVSEFFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCA 439
Query: 400 AVILLLLTATQTICSIIA 417
+ ++LLT Q+ +I++
Sbjct: 440 VLFVILLTMLQSTVAILS 457
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 95/208 (45%), Gaps = 22/208 (10%)
Query: 35 IYRVPQTRRRFHPSDYTPIMVSIGPLHHGKQELKPMEEHKLRYLHHFLQRTQVSMAHF-- 92
I+ VP+ HP YTP VSIGP H K EL ME +KL R Q + F
Sbjct: 45 IFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKI--RNQYNSFRFHD 102
Query: 93 -LAFIQIKETKLRNYYADTIDLESDDFITMILVDAVFLIELFLRNGSSDFITDDDPLFDK 151
+ +Q E K+R Y I + + ++ VD+ FLIE FL+ S F K
Sbjct: 103 LVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIE-FLKIYS----------FRK 151
Query: 152 SRWTFLTV---HMRFDLYLEENQLPFFILSELFDLAKTKTRNGDIYMGISLMTFICKWFS 208
V + D+ + ENQ+P F+L + + T + D + +S++T +CK S
Sbjct: 152 VETLINRVGHNEILRDIMMIENQIPLFVLRKTLEFQLESTESADDLL-LSVLTGLCKDLS 210
Query: 209 AEPGLPKINAESLTGVQFSEVKHFLDLV 236
P + K + + + QF E H LD +
Sbjct: 211 --PLVIKFDDDQILKAQFQECNHILDFL 236
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 259 MPGAKELYRAGVEFKSGTHENQLDIKF--CKGTLEIPFFGLFDITERVYRNLLMFENMHV 316
+P +L++AGV FK H N + F G +P L TE V RNL+ +E +
Sbjct: 345 IPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNT 404
Query: 317 YPVKYFNDYIILMSSFLVTPKDADLLVQNEII 348
F Y L++ + + +D LL + ++
Sbjct: 405 SGPLVFTRYTELINGIIDSEEDVRLLREQGVL 436
>sp|Q4A696|LON_MYCS5 Lon protease OS=Mycoplasma synoviae (strain 53) GN=lon PE=3 SV=1
Length = 890
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 278 ENQLDIKFCKGTLEIPFFGLFDITERVYRNLLMFENMHVYPVKYFND-------YIILMS 330
+++LDIK+ + LE +G+ ++ ER+ +L + N Y Y N+ Y I ++
Sbjct: 380 KDRLDIKYAREVLEKYHYGIKEVKERILEHLGVLINAQTYNKNYKNEVVSIDENYEIDLN 439
Query: 331 SFLVTPKDADLLVQNEII------GLGDSELLSTVFHSLVKDYLQ 369
F P + + I+ G G + L + +L K Y++
Sbjct: 440 LFKDKPSEKTVFNNVPILALVGPPGTGKTTLAKAISEALNKKYVK 484
>sp|B9L1J9|GLGC_THERP Glucose-1-phosphate adenylyltransferase OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=glgC PE=3 SV=1
Length = 428
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 285 FCKGTLEIPFFGLFDITERVYRNLLMFENMHVYPVKY 321
+ +GT + + LF IT R YR++L+ HVY + Y
Sbjct: 98 WYRGTADAVYHNLFYITRRPYRDVLILAGDHVYAMDY 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,161,381
Number of Sequences: 539616
Number of extensions: 6018841
Number of successful extensions: 16377
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16365
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 191,569,459
effective HSP length: 120
effective length of query: 298
effective length of database: 126,815,539
effective search space: 37791030622
effective search space used: 37791030622
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)