Query 041781
Match_columns 418
No_of_seqs 119 out of 676
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 3E-105 7E-110 815.7 31.6 360 35-407 1-391 (391)
2 PF12911 OppC_N: N-terminal TM 60.5 12 0.00026 27.1 3.3 31 385-415 10-40 (56)
3 PF07438 DUF1514: Protein of u 56.9 12 0.00026 28.4 2.8 22 392-413 2-23 (66)
4 PF14579 HHH_6: Helix-hairpin- 55.7 53 0.0012 26.3 6.8 79 269-352 1-84 (90)
5 PRK10404 hypothetical protein; 55.4 12 0.00025 31.2 2.8 19 390-409 79-97 (101)
6 PRK10132 hypothetical protein; 49.5 16 0.00036 30.8 2.8 25 384-409 78-103 (108)
7 PF14770 TMEM18: Transmembrane 45.4 18 0.00039 31.3 2.5 45 368-415 58-102 (123)
8 PF09069 EF-hand_3: EF-hand; 43.7 47 0.001 27.1 4.6 53 73-125 3-76 (90)
9 PHA02103 hypothetical protein 43.4 44 0.00095 28.1 4.4 61 285-348 30-101 (135)
10 PHA02975 hypothetical protein; 37.5 1.1E+02 0.0023 23.7 5.3 49 349-409 13-63 (69)
11 PHA02650 hypothetical protein; 37.1 1.1E+02 0.0023 24.4 5.4 21 349-370 13-33 (81)
12 PF05421 DUF751: Protein of un 35.6 61 0.0013 24.5 3.7 30 387-416 30-59 (61)
13 COG4575 ElaB Uncharacterized c 33.3 43 0.00092 28.1 2.8 23 385-408 76-99 (104)
14 PF04971 Lysis_S: Lysis protei 33.0 61 0.0013 25.0 3.4 33 378-410 19-51 (68)
15 KOG3170 Conserved phosducin-li 32.5 45 0.00098 31.4 3.1 23 368-390 70-92 (240)
16 PHA02819 hypothetical protein; 29.8 1.3E+02 0.0028 23.4 4.7 52 349-408 13-64 (71)
17 PHA02755 hypothetical protein; 29.2 70 0.0015 25.4 3.2 52 55-106 9-65 (96)
18 PF15103 G0-G1_switch_2: G0/G1 26.4 66 0.0014 26.8 2.8 24 394-417 28-51 (102)
19 COG4499 Predicted membrane pro 26.3 3.4E+02 0.0074 28.2 8.3 110 290-415 132-245 (434)
20 PHA02844 putative transmembran 26.1 1.5E+02 0.0033 23.2 4.6 22 349-371 13-34 (75)
21 PF12575 DUF3753: Protein of u 25.8 1.5E+02 0.0032 23.2 4.5 17 392-408 50-66 (72)
22 KOG4134 DNA-dependent RNA poly 23.6 60 0.0013 31.0 2.3 34 30-74 22-55 (253)
23 PHA02692 hypothetical protein; 22.9 1.7E+02 0.0036 22.8 4.2 21 349-370 13-33 (70)
24 PF10961 DUF2763: Protein of u 22.4 1.1E+02 0.0024 25.0 3.4 27 389-415 13-42 (91)
25 PF00690 Cation_ATPase_N: Cati 21.0 24 0.00053 26.6 -0.7 17 386-402 52-68 (69)
26 PF11446 DUF2897: Protein of u 20.7 1.2E+02 0.0025 22.5 2.9 20 390-409 4-23 (55)
27 PHA00649 hypothetical protein 20.4 1.4E+02 0.0031 23.1 3.4 35 353-387 16-57 (83)
28 PHA02680 ORF090 IMV phosphoryl 20.3 1.5E+02 0.0032 24.1 3.6 29 390-418 43-71 (91)
29 PF15315 FRG2: Facioscapulohum 20.2 2.3E+02 0.0049 25.9 5.1 56 354-416 113-168 (181)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=3.4e-105 Score=815.74 Aligned_cols=360 Identities=41% Similarity=0.683 Sum_probs=320.6
Q ss_pred eeecCcccccCCCCCcccceEeecccCCCCCCCCchhHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhhcccCC
Q 041781 35 IYRVPQTRRRFHPSDYTPIMVSIGPLHHGKQELKPMEEHKLRYLHHFLQRTQ---VSMAHFLAFIQIKETKLRNYYADTI 111 (418)
Q Consensus 35 I~rVP~~lr~~n~~aY~P~~VSIGPyH~g~~~L~~mE~~K~~~~~~~l~r~~---~~l~~~~~~i~~~e~~aR~~Y~~~~ 111 (418)
|||||+++|++|+++|+|++|||||||||+++|+.||++|++|++.|++|++ .++++++++|+++|++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-CcccccchhhhhhhhhhhhhcccCchHHHHHHHHHhhccCCC
Q 041781 112 D-LESDDFITMILVDAVFLIELFLRNGSSDFITDDDP-LFDKSRWTFLTVHMRFDLYLEENQLPFFILSELFDLAKTKTR 189 (418)
Q Consensus 112 ~-~~~~~f~~MlllDgcFiLe~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~i~~DllLLENQIPffVL~~L~~~~~~~~~ 189 (418)
+ +++++|++||++|||||||+|+.+.. ..+.+|| ++..+ |+...|++||+|||||||||||++||++......
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~---~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~~ 155 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRP---WLLSAIRRDLLLLENQIPFFVLEKLFELLFGSKS 155 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccc---cccccchhheeeecccchHHHHHHHHHHhccccc
Confidence 7 99999999999999999999998876 2346788 88888 9999999999999999999999999999983333
Q ss_pred CCccchhhhhHHHHHhhcccCCCCCccccccccCCCCCCCCChHHHHHHHhCCCCCC--CCcc---cc---CCccccccC
Q 041781 190 NGDIYMGISLMTFICKWFSAEPGLPKINAESLTGVQFSEVKHFLDLVILCLHSPQPP--ESRA---QS---KFSYRNMPG 261 (418)
Q Consensus 190 ~~~~~~~l~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~HLLdL~~~~~~p~~~~--~~~~---~~---~~~~~~~~s 261 (418)
... .++.++ +.+||..... ...+ .... ...+++|||||+|++++|+... ..+. .. ......+||
T Consensus 156 ~~~--~~l~~l--~~~~~~~~~~-~~~~-~~~~--~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~s 227 (391)
T PF03140_consen 156 DVD--ESLIDL--VLKFFYKHWP-SWPP-DEPI--SNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRS 227 (391)
T ss_pred Ccc--chHHHH--HHhHhccccc-cccc-cccc--cCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCC
Confidence 332 789999 9999941111 1111 0102 4567999999999999993211 1111 10 112568999
Q ss_pred HHHHHhcCcEEEeCCCC-CccceEEcccEEEeceeeeecchhHHhHhHHHHHhhcCCCCcchhhHHHHHhhccCChHhHH
Q 041781 262 AKELYRAGVEFKSGTHE-NQLDIKFCKGTLEIPFFGLFDITERVYRNLLMFENMHVYPVKYFNDYIILMSSFLVTPKDAD 340 (418)
Q Consensus 262 AteL~~aGVkFk~~~~~-~llDV~F~~g~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~~vtsYv~fM~~LI~t~~DV~ 340 (418)
||||++|||+||++++. +++||+|++|+|+||+|.||++|+++||||||||||++..+.+|||||.||++||+|++||+
T Consensus 228 A~eL~~aGV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~ 307 (391)
T PF03140_consen 228 ATELREAGVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVE 307 (391)
T ss_pred HHHHHhCCcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHH
Confidence 99999999999999876 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCce--ecCChHHHHHHHHHhhHHH---------------HHhhhcCchhhhHhhccccccccchHHHHHHHHHHH
Q 041781 341 LLVQNEII--GLGDSELLSTVFHSLVKDY---------------LQAFCKSPAHRWKAILDQNYFNTPWSTTSVIAAVIL 403 (418)
Q Consensus 341 lL~~~gIi--~lgsdeeva~lFn~L~~~~---------------l~~~~~~~~~~w~a~l~~~yf~npw~~is~~aA~~l 403 (418)
+|+++||| ++||||||++|||+||+++ ||+||+++|++|+|+++|+||+|||+++|++||+++
T Consensus 308 lL~~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~l 387 (391)
T PF03140_consen 308 LLRRKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIIL 387 (391)
T ss_pred HHHhCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHH
Confidence 99999999 8999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHH
Q 041781 404 LLLT 407 (418)
Q Consensus 404 l~~T 407 (418)
|++|
T Consensus 388 l~lT 391 (391)
T PF03140_consen 388 LLLT 391 (391)
T ss_pred HHhC
Confidence 9997
No 2
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=60.50 E-value=12 Score=27.07 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=24.7
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 041781 385 QNYFNTPWSTTSVIAAVILLLLTATQTICSI 415 (418)
Q Consensus 385 ~~yf~npw~~is~~aA~~ll~~T~~QT~~sv 415 (418)
+.+++|+...+|++.-+++++++++.-+++-
T Consensus 10 ~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 10 RRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5678899999999888888888887766653
No 3
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=56.95 E-value=12 Score=28.43 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 041781 392 WSTTSVIAAVILLLLTATQTIC 413 (418)
Q Consensus 392 w~~is~~aA~~ll~~T~~QT~~ 413 (418)
|.++|.+.|+++|++-.+|+-.
T Consensus 2 WIiiSIvLai~lLI~l~~ns~l 23 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSEL 23 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 8999999999999998888753
No 4
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=55.67 E-value=53 Score=26.28 Aligned_cols=79 Identities=9% Similarity=0.230 Sum_probs=55.5
Q ss_pred CcEEEeCC-CCCccceEEcc--cEEEeceeeeecchhHHhHhHHHHHhhcCCCCcchhhHHHHHhhc-cCChHhHHHHHH
Q 041781 269 GVEFKSGT-HENQLDIKFCK--GTLEIPFFGLFDITERVYRNLLMFENMHVYPVKYFNDYIILMSSF-LVTPKDADLLVQ 344 (418)
Q Consensus 269 GVkFk~~~-~~~llDV~F~~--g~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~~vtsYv~fM~~L-I~t~~DV~lL~~ 344 (418)
||++.+.. ..+-.+-+..+ +.+.+|--.|..-.+.....+++-=+ . ..++|+-.|...+ --+..+++.|.+
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-~----g~f~s~~df~~R~~~i~~~~le~Li~ 75 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-N----GPFKSLEDFIQRLPKINKRQLEALIK 75 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-C----SS-SSHHHHHHHS-TS-HHHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-c----CCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 77787753 23334555666 79999999999999999888887666 3 3478888888888 788999999999
Q ss_pred CCce-ecCC
Q 041781 345 NEII-GLGD 352 (418)
Q Consensus 345 ~gIi-~lgs 352 (418)
.|.+ .++.
T Consensus 76 aGafd~~~~ 84 (90)
T PF14579_consen 76 AGAFDSFGK 84 (90)
T ss_dssp TTTTTTCSS
T ss_pred CCCccccCh
Confidence 9999 7765
No 5
>PRK10404 hypothetical protein; Provisional
Probab=55.41 E-value=12 Score=31.24 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=13.9
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 041781 390 TPWSTTSVIAAVILLLLTAT 409 (418)
Q Consensus 390 npw~~is~~aA~~ll~~T~~ 409 (418)
|||..+++.| .+.|++.++
T Consensus 79 ~Pw~avGiaa-gvGlllG~L 97 (101)
T PRK10404 79 KPWQGIGVGA-AVGLVLGLL 97 (101)
T ss_pred CcHHHHHHHH-HHHHHHHHH
Confidence 9999999755 466666654
No 6
>PRK10132 hypothetical protein; Provisional
Probab=49.45 E-value=16 Score=30.76 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=16.3
Q ss_pred cccccc-cchHHHHHHHHHHHHHHHHH
Q 041781 384 DQNYFN-TPWSTTSVIAAVILLLLTAT 409 (418)
Q Consensus 384 ~~~yf~-npw~~is~~aA~~ll~~T~~ 409 (418)
..+|.. |||..+++.|+ ++|++.++
T Consensus 78 ~~~~V~~~Pw~svgiaag-vG~llG~L 103 (108)
T PRK10132 78 ADTFVRERPWCSVGTAAA-VGIFIGAL 103 (108)
T ss_pred HHHHHHhCcHHHHHHHHH-HHHHHHHH
Confidence 344544 99999997554 66666554
No 7
>PF14770 TMEM18: Transmembrane protein 18
Probab=45.40 E-value=18 Score=31.28 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=34.1
Q ss_pred HHhhhcCchhhhHhhccccccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 041781 368 LQAFCKSPAHRWKAILDQNYFNTPWSTTSVIAAVILLLLTATQTICSI 415 (418)
Q Consensus 368 l~~~~~~~~~~w~a~l~~~yf~npw~~is~~aA~~ll~~T~~QT~~sv 415 (418)
+|++..+-|+ ..-+++||.+-=.+||++-++=+|+.+++..+..+
T Consensus 58 iN~~~a~nW~---~Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l 102 (123)
T PF14770_consen 58 INEYAARNWR---SFSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWL 102 (123)
T ss_pred HHHHHHHHHH---HHhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHH
Confidence 8888887764 33468999999999999988866666666655544
No 8
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=43.71 E-value=47 Score=27.07 Aligned_cols=53 Identities=15% Similarity=0.405 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhh-----hhHHHHHHHH-------------HHHHHHHhhhccc---CCCCChHHHHHHHHHH
Q 041781 73 HKLRYLHHFLQRTQ-----VSMAHFLAFI-------------QIKETKLRNYYAD---TIDLESDDFITMILVD 125 (418)
Q Consensus 73 ~K~~~~~~~l~r~~-----~~l~~~~~~i-------------~~~e~~aR~~Y~~---~~~~~~~~f~~MlllD 125 (418)
.|.||+=+++..++ ..++.++..+ ...|..+|+|+.. .-+.+.++|++.|..|
T Consensus 3 dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 58888888886532 1244443332 2368889999976 4578899999888765
No 9
>PHA02103 hypothetical protein
Probab=43.37 E-value=44 Score=28.07 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=43.5
Q ss_pred EcccE--EEeceeeeecchhHHhHhHHHHHhhcCCC------C---cchhhHHHHHhhccCChHhHHHHHHCCce
Q 041781 285 FCKGT--LEIPFFGLFDITERVYRNLLMFENMHVYP------V---KYFNDYIILMSSFLVTPKDADLLVQNEII 348 (418)
Q Consensus 285 F~~g~--L~IP~l~id~~T~~llrNLiA~Eq~~~~~------~---~~vtsYv~fM~~LI~t~~DV~lL~~~gIi 348 (418)
|++.+ -+||.+..|+...-+.|=.+-+|.|.... . .++-+|-... -..+|-|++-.+-||=
T Consensus 30 f~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyryf---~ee~e~ie~we~ygve 101 (135)
T PHA02103 30 FSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRYF---GEEAEGVELWEEYGVE 101 (135)
T ss_pred cCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHHh---cccchhhhHHHHhCcc
Confidence 34454 57999999999999999999999997431 1 2344454433 3567778888888875
No 10
>PHA02975 hypothetical protein; Provisional
Probab=37.55 E-value=1.1e+02 Score=23.73 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=25.8
Q ss_pred ecCChHHHHHHHHHhhHHHHHhh--hcCchhhhHhhccccccccchHHHHHHHHHHHHHHHHH
Q 041781 349 GLGDSELLSTVFHSLVKDYLQAF--CKSPAHRWKAILDQNYFNTPWSTTSVIAAVILLLLTAT 409 (418)
Q Consensus 349 ~lgsdeeva~lFn~L~~~~l~~~--~~~~~~~w~a~l~~~yf~npw~~is~~aA~~ll~~T~~ 409 (418)
.-++|++--+|.+-. +.++..= +++++.. .-|.++.+++++++++++++
T Consensus 13 msS~DdDF~nFI~vV-ksVLtdk~~~~~~~~~-----------~~~~ii~i~~v~~~~~~~fl 63 (69)
T PHA02975 13 LESNDSDFEDFIDTI-MHVLTGKKEPKKKSSL-----------SIILIIFIIFITCIAVFTFL 63 (69)
T ss_pred cCCChHHHHHHHHHH-HHHHcCCCCCCcCCch-----------HHHHHHHHHHHHHHHHHHHH
Confidence 345677777777655 5554432 1112111 22445666666666666653
No 11
>PHA02650 hypothetical protein; Provisional
Probab=37.07 E-value=1.1e+02 Score=24.37 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=12.8
Q ss_pred ecCChHHHHHHHHHhhHHHHHh
Q 041781 349 GLGDSELLSTVFHSLVKDYLQA 370 (418)
Q Consensus 349 ~lgsdeeva~lFn~L~~~~l~~ 370 (418)
.-++|++--+|.+-. +.++..
T Consensus 13 msS~DdDFnnFI~VV-kSVLtD 33 (81)
T PHA02650 13 MSSTDDDFNNFIDVV-KSVLSD 33 (81)
T ss_pred cCCcHHHHHHHHHHH-HHHHcC
Confidence 345677777777655 555444
No 12
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=35.62 E-value=61 Score=24.50 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=26.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 041781 387 YFNTPWSTTSVIAAVILLLLTATQTICSII 416 (418)
Q Consensus 387 yf~npw~~is~~aA~~ll~~T~~QT~~sv~ 416 (418)
-++||-+.++++++.+..+..+.+|+-+++
T Consensus 30 llk~p~tai~~i~~~~~~~~~l~~tL~aMl 59 (61)
T PF05421_consen 30 LLKNPVTAIALIGILIGGFIFLYFTLRAML 59 (61)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457999999999999999999999987775
No 13
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=33.30 E-value=43 Score=28.05 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=15.1
Q ss_pred ccccc-cchHHHHHHHHHHHHHHHH
Q 041781 385 QNYFN-TPWSTTSVIAAVILLLLTA 408 (418)
Q Consensus 385 ~~yf~-npw~~is~~aA~~ll~~T~ 408 (418)
.+|.. |||..|++-||+ .|++.+
T Consensus 76 D~yV~e~PWq~VGvaAaV-GlllGl 99 (104)
T COG4575 76 DDYVRENPWQGVGVAAAV-GLLLGL 99 (104)
T ss_pred HHHHHcCCchHHHHHHHH-HHHHHH
Confidence 44544 999999987654 444443
No 14
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=33.03 E-value=61 Score=25.03 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=24.8
Q ss_pred hhHhhccccccccchHHHHHHHHHHHHHHHHHH
Q 041781 378 RWKAILDQNYFNTPWSTTSVIAAVILLLLTATQ 410 (418)
Q Consensus 378 ~w~a~l~~~yf~npw~~is~~aA~~ll~~T~~Q 410 (418)
-|...+...+-+..|.+|++++++++-++|.+-
T Consensus 19 ~wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 19 YWLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 355555566667889999999998887777653
No 15
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=32.52 E-value=45 Score=31.37 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=19.7
Q ss_pred HHhhhcCchhhhHhhcccccccc
Q 041781 368 LQAFCKSPAHRWKAILDQNYFNT 390 (418)
Q Consensus 368 l~~~~~~~~~~w~a~l~~~yf~n 390 (418)
|+.|.++|..-|+++..+.-|.+
T Consensus 70 LE~YR~kRl~E~r~~~~k~kfG~ 92 (240)
T KOG3170|consen 70 LEMYRIKRLAEWRATAEKAKFGE 92 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 88999999999999887777764
No 16
>PHA02819 hypothetical protein; Provisional
Probab=29.85 E-value=1.3e+02 Score=23.38 Aligned_cols=52 Identities=8% Similarity=0.168 Sum_probs=25.5
Q ss_pred ecCChHHHHHHHHHhhHHHHHhhhcCchhhhHhhccccccccchHHHHHHHHHHHHHHHH
Q 041781 349 GLGDSELLSTVFHSLVKDYLQAFCKSPAHRWKAILDQNYFNTPWSTTSVIAAVILLLLTA 408 (418)
Q Consensus 349 ~lgsdeeva~lFn~L~~~~l~~~~~~~~~~w~a~l~~~yf~npw~~is~~aA~~ll~~T~ 408 (418)
.-++|++--+|.+-. |.++.. ++...+- .+-+..-|.++.++++++++++++
T Consensus 13 msS~DdDFnnFI~VV-ksVLtd--~s~~~~~-----~~~~~~~~~ii~l~~~~~~~~~~f 64 (71)
T PHA02819 13 MSSSDDDFNNFINVV-KSVLNN--ENYNKKT-----KKSFLRYYLIIGLVTIVFVIIFII 64 (71)
T ss_pred hCCchhHHHHHHHHH-HHHHcC--CCCcccc-----cCChhHHHHHHHHHHHHHHHHHHH
Confidence 345677777766655 566655 3321100 111122234555666666666554
No 17
>PHA02755 hypothetical protein; Provisional
Probab=29.25 E-value=70 Score=25.41 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=31.9
Q ss_pred EeecccCC---CCCCCCc-hhHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhh
Q 041781 55 VSIGPLHH---GKQELKP-MEEHKLRYLHHFLQRTQ-VSMAHFLAFIQIKETKLRNY 106 (418)
Q Consensus 55 VSIGPyH~---g~~~L~~-mE~~K~~~~~~~l~r~~-~~l~~~~~~i~~~e~~aR~~ 106 (418)
+.||-|-- |+|.... -|++|.+|...+++-.. .+.+.|-+....-|...|.|
T Consensus 9 m~igsypdavqgsp~~e~aee~ykmkyalgic~alke~dpk~fee~fgage~~lq~c 65 (96)
T PHA02755 9 MAIGSYPDAVQGSPAAEAAEEKYKMKYALGICQALKEADPKAFEETFGAGEADLQKC 65 (96)
T ss_pred cccccCcccccCChHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcccchhHHHH
Confidence 46777764 6665544 48899999999887543 23444444444444455544
No 18
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=26.40 E-value=66 Score=26.77 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 041781 394 TTSVIAAVILLLLTATQTICSIIA 417 (418)
Q Consensus 394 ~is~~aA~~ll~~T~~QT~~sv~~ 417 (418)
.++.+.|++..++.+++|+|+-++
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs 51 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFS 51 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccc
Confidence 466777899999999999998654
No 19
>COG4499 Predicted membrane protein [Function unknown]
Probab=26.29 E-value=3.4e+02 Score=28.16 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=68.8
Q ss_pred EEeceeeeecchhHHhHhHHHHHhhcCCCCcchhhHHHHHhhccCChHhHHHHHHCCceecCChHHHHHHHHH-hhHHH-
Q 041781 290 LEIPFFGLFDITERVYRNLLMFENMHVYPVKYFNDYIILMSSFLVTPKDADLLVQNEIIGLGDSELLSTVFHS-LVKDY- 367 (418)
Q Consensus 290 L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~~vtsYv~fM~~LI~t~~DV~lL~~~gIi~lgsdeeva~lFn~-L~~~~- 367 (418)
=.|||..+++ +.+|.-+-|+=-|.-.....|-+|+.+=..|-.|+.--.+|.- .+-+++++|... .-++.
T Consensus 132 ~~lpPye~te--e~f~~~ykA~~~~~fn~k~~Fe~l~~g~lt~k~t~f~ksil~a------~Tld~l~e~i~e~~~kE~e 203 (434)
T COG4499 132 NSLPPYEMTE--ERFLKEYKALAIYAFNGKFSFESLVNGNLTLKGTPFEKSILDA------ETLDDLAEFIDEEYQKETE 203 (434)
T ss_pred ccCCCCCCCH--HHHHHHHHHHHHHHHcCCccHHHHhcchhhhcCCHHHHHHhhh------hhHHHHHHHHHHHHHHHHH
Confidence 3589998875 6777777777777666556788888887778888876555543 334677777776 55553
Q ss_pred -HHhhhcC-chhhhHhhccccccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 041781 368 -LQAFCKS-PAHRWKAILDQNYFNTPWSTTSVIAAVILLLLTATQTICSI 415 (418)
Q Consensus 368 -l~~~~~~-~~~~w~a~l~~~yf~npw~~is~~aA~~ll~~T~~QT~~sv 415 (418)
+++-|-. +..+| +.|+ |.+++++++.+++++-+.=.+|+.
T Consensus 204 ~~~kn~a~VpK~k~------~ifk--~~giGliillvl~li~~~Y~~f~~ 245 (434)
T COG4499 204 KINKNYAFVPKKKY------TIFK--YFGIGLIILLVLLLIYFTYYYFSN 245 (434)
T ss_pred HHhcceeecccccc------eehh--hHHHhHHHHHHHHHHHHHHHHHHc
Confidence 3322221 22233 2232 667777776666666555555544
No 20
>PHA02844 putative transmembrane protein; Provisional
Probab=26.12 E-value=1.5e+02 Score=23.22 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=13.6
Q ss_pred ecCChHHHHHHHHHhhHHHHHhh
Q 041781 349 GLGDSELLSTVFHSLVKDYLQAF 371 (418)
Q Consensus 349 ~lgsdeeva~lFn~L~~~~l~~~ 371 (418)
.-++|++--+|.+-. +.++..=
T Consensus 13 msS~DdDFnnFI~vV-ksVLtd~ 34 (75)
T PHA02844 13 LSSENEDFNNFIDVV-KSVLSDD 34 (75)
T ss_pred cCCchHHHHHHHHHH-HHHHcCC
Confidence 345677777777655 5665543
No 21
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=25.83 E-value=1.5e+02 Score=23.19 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 041781 392 WSTTSVIAAVILLLLTA 408 (418)
Q Consensus 392 w~~is~~aA~~ll~~T~ 408 (418)
|.+++++++++++++++
T Consensus 50 ~~ii~ii~v~ii~~l~f 66 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTF 66 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777777777654
No 22
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=23.57 E-value=60 Score=30.97 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=25.3
Q ss_pred CCCceeeecCcccccCCCCCcccceEeecccCCCCCCCCchhHHH
Q 041781 30 SEASCIYRVPQTRRRFHPSDYTPIMVSIGPLHHGKQELKPMEEHK 74 (418)
Q Consensus 30 ~~~~~I~rVP~~lr~~n~~aY~P~~VSIGPyH~g~~~L~~mE~~K 74 (418)
+..-|++++|-.+ .+|+||||-..+.-..||+|=
T Consensus 22 sp~sclv~~t~dl-----------hlalaP~yl~npl~~~i~ehl 55 (253)
T KOG4134|consen 22 SPESCLVCITTDL-----------HLALAPYYLANPLHALIEEHL 55 (253)
T ss_pred CCcceEEEeeehe-----------eeeecchhhcchhHHHHHHHh
Confidence 6677999999765 689999998776444555553
No 23
>PHA02692 hypothetical protein; Provisional
Probab=22.89 E-value=1.7e+02 Score=22.77 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=11.7
Q ss_pred ecCChHHHHHHHHHhhHHHHHh
Q 041781 349 GLGDSELLSTVFHSLVKDYLQA 370 (418)
Q Consensus 349 ~lgsdeeva~lFn~L~~~~l~~ 370 (418)
.-++||+--+|.+-. +.++..
T Consensus 13 mss~DdDF~~Fi~vV-ksVLtD 33 (70)
T PHA02692 13 LSNSDEDFEEFLNIV-RTVMTE 33 (70)
T ss_pred cCCCHHHHHHHHHHH-HHHHcC
Confidence 334677666666554 555443
No 24
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=22.44 E-value=1.1e+02 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=18.4
Q ss_pred ccchH---HHHHHHHHHHHHHHHHHHhhhh
Q 041781 389 NTPWS---TTSVIAAVILLLLTATQTICSI 415 (418)
Q Consensus 389 ~npw~---~is~~aA~~ll~~T~~QT~~sv 415 (418)
++||. ++-++-+++-++..++||+++.
T Consensus 13 rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p 42 (91)
T PF10961_consen 13 RSPWRLSRITDFFWGIINFIVLFFQTLFSP 42 (91)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46774 5556666666777778888765
No 25
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.97 E-value=24 Score=26.59 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=12.1
Q ss_pred cccccchHHHHHHHHHH
Q 041781 386 NYFNTPWSTTSVIAAVI 402 (418)
Q Consensus 386 ~yf~npw~~is~~aA~~ 402 (418)
+.|.||+..+=++||++
T Consensus 52 ~~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 52 KQFKNPFIILLLIAAIL 68 (69)
T ss_dssp HHTTSHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 35689998877776654
No 26
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=20.65 E-value=1.2e+02 Score=22.48 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 041781 390 TPWSTTSVIAAVILLLLTAT 409 (418)
Q Consensus 390 npw~~is~~aA~~ll~~T~~ 409 (418)
+||.++.++.|+++=-+.++
T Consensus 4 ~~wlIIviVlgvIigNia~L 23 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAAL 23 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHH
Confidence 79999999988877655554
No 27
>PHA00649 hypothetical protein
Probab=20.39 E-value=1.4e+02 Score=23.11 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhhHHH-----HHhhhcCc--hhhhHhhccccc
Q 041781 353 SELLSTVFHSLVKDY-----LQAFCKSP--AHRWKAILDQNY 387 (418)
Q Consensus 353 deeva~lFn~L~~~~-----l~~~~~~~--~~~w~a~l~~~y 387 (418)
+..|++.|..|+-++ +++|...- .+||+...-+-+
T Consensus 16 ~rAV~~~~~~LGVD~~~P~~VEEFr~D~~~~Rr~RKA~D~G~ 57 (83)
T PHA00649 16 DRAVKKVFAILGVDVDVPEQVEEFREDLRFGRRMRKAADHGF 57 (83)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 566777777777665 66665532 236666554433
No 28
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=20.27 E-value=1.5e+02 Score=24.06 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhccC
Q 041781 390 TPWSTTSVIAAVILLLLTATQTICSIIAL 418 (418)
Q Consensus 390 npw~~is~~aA~~ll~~T~~QT~~sv~~y 418 (418)
++|.++|.++=++..++++-=-+||.+.|
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46777766665555555555556666543
No 29
>PF15315 FRG2: Facioscapulohumeral muscular dystrophy candidate 2
Probab=20.17 E-value=2.3e+02 Score=25.92 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhHHHHHhhhcCchhhhHhhccccccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 041781 354 ELLSTVFHSLVKDYLQAFCKSPAHRWKAILDQNYFNTPWSTTSVIAAVILLLLTATQTICSII 416 (418)
Q Consensus 354 eeva~lFn~L~~~~l~~~~~~~~~~w~a~l~~~yf~npw~~is~~aA~~ll~~T~~QT~~sv~ 416 (418)
+.++.+.+.++.. -|+.-...|. .+.|+.=.|--++.++-+-.-++..+||+|++-
T Consensus 113 KsLVtslR~~SEa----IYqD~aq~~a---Qq~~spLt~EQl~~L~qL~gpL~a~vqT~ysmA 168 (181)
T PF15315_consen 113 KSLVTSLRAMSEA----IYQDLAQVQA---QQHHSPLTWEQLSQLAQLRGPLCAAVQTLYSMA 168 (181)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHH---HhhcCCCCHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3445555555533 4444444453 367888889999999999999999999999974
Done!