Query 041781
Match_columns 418
No_of_seqs 119 out of 676
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yoz_A Hypothetical protein AF 20.7 73 0.0025 25.4 3.1 51 320-375 4-54 (116)
2 2l27_B Peptide agonist; CRF, E 17.9 35 0.0012 22.2 0.6 21 293-314 1-21 (38)
3 2rmf_A Urocortin, HUCN1; CRF l 15.9 28 0.00095 22.9 -0.3 20 293-313 3-22 (40)
4 2kru_A Light-independent proto 15.7 44 0.0015 24.4 0.7 13 170-182 15-27 (63)
5 3hd7_B Syntaxin-1A; membrane p 15.7 2.2E+02 0.0076 22.5 5.1 16 352-367 29-44 (109)
6 2d96_A Nuclear factor NF-kappa 14.8 1.2E+02 0.0042 24.4 3.3 30 170-200 10-39 (109)
7 1v54_G Cytochrome C oxidase po 11.1 1.5E+02 0.0053 22.7 2.7 24 390-413 14-37 (85)
8 1sbx_A SKI oncogene, C-SKI; wi 10.9 1.8E+02 0.0063 23.3 3.1 63 288-363 33-103 (106)
9 1u9l_A Transcription elongatio 10.3 2.7E+02 0.0091 20.3 3.7 23 326-348 6-28 (70)
10 2l09_A ASR4154 protein; proto- 9.6 45 0.0015 24.2 -0.8 13 170-182 14-26 (62)
No 1
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=20.74 E-value=73 Score=25.38 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=41.0
Q ss_pred cchhhHHHHHhhccCChHhHHHHHHCCceecCChHHHHHHHHHhhHHHHHhhhcCc
Q 041781 320 KYFNDYIILMSSFLVTPKDADLLVQNEIIGLGDSELLSTVFHSLVKDYLQAFCKSP 375 (418)
Q Consensus 320 ~~vtsYv~fM~~LI~t~~DV~lL~~~gIi~lgsdeeva~lFn~L~~~~l~~~~~~~ 375 (418)
.|..+|..=|..|+.-..||+.-. -|.+++-++++|+.=|..+++.|+...
T Consensus 4 ~Y~NtyLekmGEl~k~~m~VeeAk-----~L~D~eni~EmFRsD~E~I~~~f~~G~ 54 (116)
T 1yoz_A 4 LYINSFLDRMGEIIRGEKSVEEAD-----KLLDQKNIFEMFRSDCEEILNLYKSGK 54 (116)
T ss_dssp BCCCHHHHHHHHHHTTSSCGGGHH-----HHTCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHH-----HccCHHHHHHHHHhhHHHHHHHHHcCC
Confidence 467889999999998888855442 478999999999999999988777654
No 2
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=17.94 E-value=35 Score=22.19 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.5
Q ss_pred ceeeeecchhHHhHhHHHHHhh
Q 041781 293 PFFGLFDITERVYRNLLMFENM 314 (418)
Q Consensus 293 P~l~id~~T~~llrNLiA~Eq~ 314 (418)
||+.+| -|--+|||++-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 777777 588999999876543
No 3
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=15.85 E-value=28 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.8
Q ss_pred ceeeeecchhHHhHhHHHHHh
Q 041781 293 PFFGLFDITERVYRNLLMFEN 313 (418)
Q Consensus 293 P~l~id~~T~~llrNLiA~Eq 313 (418)
||+.|| -|--+|||++-...
T Consensus 3 PpiSiD-LTFHlLR~miemar 22 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELAR 22 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHHH
Confidence 777777 58899999987653
No 4
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=15.75 E-value=44 Score=24.39 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=9.9
Q ss_pred cCchHHHHHHHHH
Q 041781 170 NQLPFFILSELFD 182 (418)
Q Consensus 170 NQIPffVL~~L~~ 182 (418)
++|||||=.++=.
T Consensus 15 kkIP~FVR~kvrr 27 (63)
T 2kru_A 15 GKVPFFVRKKVRK 27 (63)
T ss_dssp TTSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 6799999776544
No 5
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=15.73 E-value=2.2e+02 Score=22.53 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=11.7
Q ss_pred ChHHHHHHHHHhhHHH
Q 041781 352 DSELLSTVFHSLVKDY 367 (418)
Q Consensus 352 sdeeva~lFn~L~~~~ 367 (418)
+=.|+.++|+.|+.-+
T Consensus 29 ~I~eL~~iF~dla~lV 44 (109)
T 3hd7_B 29 SIRELHDMFMDMAMLV 44 (109)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467888888887666
No 6
>2d96_A Nuclear factor NF-kappa-B P100 subunit; six helix bundle, processing, proteasome, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.82 E-value=1.2e+02 Score=24.37 Aligned_cols=30 Identities=13% Similarity=0.004 Sum_probs=21.8
Q ss_pred cCchHHHHHHHHHhhccCCCCCccchhhhhH
Q 041781 170 NQLPFFILSELFDLAKTKTRNGDIYMGISLM 200 (418)
Q Consensus 170 NQIPffVL~~L~~~~~~~~~~~~~~~~l~~l 200 (418)
|+||.-++++|.++...+... ..|..|.+.
T Consensus 10 ~~L~~~~~~kLc~lLD~p~~~-~~Wr~LA~~ 39 (109)
T 2d96_A 10 LSLGDTALQNLEQLLDGPEAQ-GSWAELAER 39 (109)
T ss_dssp CSCCHHHHHHHHHHHSSSSCS-SCHHHHHHH
T ss_pred hhCCHHHHHHHHHHcCCCCCC-CCHHHHHHH
Confidence 789999999999999755432 235666554
No 7
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=11.12 E-value=1.5e+02 Score=22.73 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Q 041781 390 TPWSTTSVIAAVILLLLTATQTIC 413 (418)
Q Consensus 390 npw~~is~~aA~~ll~~T~~QT~~ 413 (418)
+-|.-||+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999898888888888764
No 8
>1sbx_A SKI oncogene, C-SKI; winged helix, forkhead, oncoprotein; 1.65A {Homo sapiens} SCOP: a.6.1.4
Probab=10.88 E-value=1.8e+02 Score=23.27 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=41.7
Q ss_pred cEEEeceeeeecchhHHhHhHHHHHhhcCCC-CcchhhHHHHHhhccCChHhHHHHHHCCce-------ecCChHHHHHH
Q 041781 288 GTLEIPFFGLFDITERVYRNLLMFENMHVYP-VKYFNDYIILMSSFLVTPKDADLLVQNEII-------GLGDSELLSTV 359 (418)
Q Consensus 288 g~L~IP~l~id~~T~~llrNLiA~Eq~~~~~-~~~vtsYv~fM~~LI~t~~DV~lL~~~gIi-------~lgsdeeva~l 359 (418)
..|=+|++ .+.+|+|+. +.|-+... ...++ +-.+|++-++.|+..|+| .|=+-+|+..+
T Consensus 33 ~rlCLPQi-----~~~~Lk~~~-l~~I~~~~~~L~I~-------~~~Ct~eQl~~Lk~~g~ip~~a~~CgLItk~DaerL 99 (106)
T 1sbx_A 33 KRLCLPQI-----LNSVLRDFS-LQQINAVCDELHIY-------CSRCTADQLEILKVMGILPFSAPSCGLITKTDAERL 99 (106)
T ss_dssp EEEEHHHH-----HTTTTTTSC-HHHHHHHHHHTTCC-------CEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHH
T ss_pred EEEehHHH-----HHHHHHhCC-HHHHHHHHHHhCcc-------cccCCHHHHHHHHHcCccCCCCcccCceeHHHHHHH
Confidence 35667776 556777777 55544332 11121 346899999999999999 24456777777
Q ss_pred HHHh
Q 041781 360 FHSL 363 (418)
Q Consensus 360 Fn~L 363 (418)
.+.+
T Consensus 100 ~~~l 103 (106)
T 1sbx_A 100 CNAL 103 (106)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 9
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=10.32 E-value=2.7e+02 Score=20.34 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=19.9
Q ss_pred HHHHhhccCChHhHHHHHHCCce
Q 041781 326 IILMSSFLVTPKDADLLVQNEII 348 (418)
Q Consensus 326 v~fM~~LI~t~~DV~lL~~~gIi 348 (418)
-.||..|=-++.|++.|.+.|+-
T Consensus 6 ~~f~~~lgI~e~~a~~L~~~Gf~ 28 (70)
T 1u9l_A 6 DTFTKYLDIDEDFATVLVEEGFS 28 (70)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCHHHHHHHHHcCcC
Confidence 36888888889999999999985
No 10
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=9.59 E-value=45 Score=24.25 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=9.7
Q ss_pred cCchHHHHHHHHH
Q 041781 170 NQLPFFILSELFD 182 (418)
Q Consensus 170 NQIPffVL~~L~~ 182 (418)
++|||||=.++=.
T Consensus 14 kkIP~FVR~kvrr 26 (62)
T 2l09_A 14 KNIPFFARSQAKA 26 (62)
T ss_dssp HTSCGGGHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 5799999776544
Done!