Query 041781
Match_columns 418
No_of_seqs 119 out of 676
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 18:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041781.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041781hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 26.5 59 0.0043 23.8 5.6 53 72-124 3-78 (97)
2 d1v54g_ f.23.2.1 (G:) Mitochon 14.2 53 0.0038 23.5 2.7 24 390-413 14-37 (84)
3 d1sbxa_ a.6.1.4 (A:) Ski oncog 14.1 60 0.0044 24.2 3.1 55 301-363 41-103 (106)
4 d2i4ra1 c.149.1.1 (A:4-79) V-t 12.6 33 0.0024 23.9 1.2 49 10-58 26-76 (76)
5 d2outa1 a.140.3.2 (A:94-131) U 11.4 32 0.0023 20.1 0.6 15 263-277 6-20 (38)
6 d1l8ra_ a.6.1.4 (A:) Retinal d 11.4 63 0.0046 23.9 2.4 55 301-362 34-97 (101)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 10.5 65 0.0048 29.8 2.9 25 383-407 401-425 (472)
8 d1v8ca2 d.129.5.1 (A:88-165) M 9.8 58 0.0042 22.1 1.6 11 288-298 49-59 (78)
9 d1gdha2 c.23.12.1 (A:2-100,A:2 8.2 95 0.0069 23.3 2.6 23 337-359 81-107 (129)
10 d1v9la1 c.2.1.7 (A:180-421) Gl 7.3 2.7E+02 0.02 23.0 5.5 32 334-365 146-181 (242)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.52 E-value=59 Score=23.84 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhh-----hhHHHHHHHHH---------------HHHHHHhhhccc---CCCCChHHHHHHHHH
Q 041781 72 EHKLRYLHHFLQRTQ-----VSMAHFLAFIQ---------------IKETKLRNYYAD---TIDLESDDFITMILV 124 (418)
Q Consensus 72 ~~K~~~~~~~l~r~~-----~~l~~~~~~i~---------------~~e~~aR~~Y~~---~~~~~~~~f~~Mlll 124 (418)
+.|.||+=+.+..++ ..++.++..+- ..|..+|+|+.. .-+.+.++|++.|..
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~~ 78 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRL 78 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHHh
Confidence 358888888886442 13444443331 247888888852 235777777776653
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.16 E-value=53 Score=23.49 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Q 041781 390 TPWSTTSVIAAVILLLLTATQTIC 413 (418)
Q Consensus 390 npw~~is~~aA~~ll~~T~~QT~~ 413 (418)
+=|.-||+++|+-.++++.+.++.
T Consensus 14 ~lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348889999998888888888763
No 3
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.05 E-value=60 Score=24.19 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=36.8
Q ss_pred hhHHhHhHHHHHhhcCCCC-cchhhHHHHHhhccCChHhHHHHHHCCce-------ecCChHHHHHHHHHh
Q 041781 301 TERVYRNLLMFENMHVYPV-KYFNDYIILMSSFLVTPKDADLLVQNEII-------GLGDSELLSTVFHSL 363 (418)
Q Consensus 301 T~~llrNLiA~Eq~~~~~~-~~vtsYv~fM~~LI~t~~DV~lL~~~gIi-------~lgsdeeva~lFn~L 363 (418)
-..+|+|+ .+.|-+.... ..+ .+..+|++-+++|+..|+| .|=+-+|+..+.+.|
T Consensus 41 ~~~vLk~~-s~~~I~~~~~~L~I-------~~~~Ct~eQL~~Lk~~gaip~~~~~C~LItk~DaErL~~~l 103 (106)
T d1sbxa_ 41 LNSVLRDF-SLQQINAVCDELHI-------YCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERLCNAL 103 (106)
T ss_dssp HTTTTTTS-CHHHHHHHHHHTTC-------CCEECCHHHHHHHHHTTSSCTTCCCCEEEEHHHHHHHHHHH
T ss_pred HHHHHhhC-CHHHHHHHHHHhCc-------eeccCCHHHHHHHHHcCCCCCCCCcccceeHHHHHHHHHHH
Confidence 45677777 6666554321 112 2345899999999999999 344677777777765
No 4
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.58 E-value=33 Score=23.91 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhhhhhccCCC--CCCceeeecCcccccCCCCCcccceEeec
Q 041781 10 DMENLASSLSGKFKTLRYTS--SEASCIYRVPQTRRRFHPSDYTPIMVSIG 58 (418)
Q Consensus 10 ~~~~~~~~i~~~~~~~~~~~--~~~~~I~rVP~~lr~~n~~aY~P~~VSIG 58 (418)
..+++.+.+++-++...-.- -++-..-++|+.+++.-.+.-.|.++.||
T Consensus 26 ~~ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 26 SDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp SHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCCSSEEEEEC
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEeHHHHHHhhHHHHHHHhcCCCCEEEecC
Confidence 34566666665332210000 12223346788888877888999999998
No 5
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=11.38 E-value=32 Score=20.10 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=12.2
Q ss_pred HHHHhcCcEEEeCCC
Q 041781 263 KELYRAGVEFKSGTH 277 (418)
Q Consensus 263 teL~~aGVkFk~~~~ 277 (418)
.+|-+.||.||.+.+
T Consensus 6 aqltergitfkqsat 20 (38)
T d2outa1 6 AQLTERGITFKQSAT 20 (38)
T ss_dssp HHHHHHTCCCSSSCC
T ss_pred HHHHHcCceeeccch
Confidence 478899999998754
No 6
>d1l8ra_ a.6.1.4 (A:) Retinal determination protein Dachshund {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.35 E-value=63 Score=23.89 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=37.7
Q ss_pred hhHHhHhHH-HHHhhcCCCC-cchhhHHHHHhhccCChHhHHHHHHCCce-------ecCChHHHHHHHHH
Q 041781 301 TERVYRNLL-MFENMHVYPV-KYFNDYIILMSSFLVTPKDADLLVQNEII-------GLGDSELLSTVFHS 362 (418)
Q Consensus 301 T~~llrNLi-A~Eq~~~~~~-~~vtsYv~fM~~LI~t~~DV~lL~~~gIi-------~lgsdeeva~lFn~ 362 (418)
-..+|+|++ .+.|-+.... ..+ ....+|++-+++|+..|+| .|=+-+|+..|+|.
T Consensus 34 ~~~vLk~~~~s~~tI~~k~~~L~I-------~~~~Ct~eQl~~Lk~~gaip~~~~~C~LItk~DaErLy~~ 97 (101)
T d1l8ra_ 34 FDLFLKHLVGGLHTVYTKLKRLEI-------TPVVCNVEQVRILRGLGAIQPGVNRCKLISRKDFETLYND 97 (101)
T ss_dssp HHHHTTTTTCCHHHHHHHHHHTTC-------CCEECCHHHHHHHHHHTSSCTTCCCCEEEEHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHhCc-------eeccCCHHHHHHHHHcCCCCCCCCcccceeHHHHHHHHHh
Confidence 467788876 6666554321 111 2345899999999999999 34467788888775
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=10.50 E-value=65 Score=29.84 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=18.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHH
Q 041781 383 LDQNYFNTPWSTTSVIAAVILLLLT 407 (418)
Q Consensus 383 l~~~yf~npw~~is~~aA~~ll~~T 407 (418)
+++..|+|+|.+++++.++++.++.
T Consensus 401 ~~~~~~~N~~l~~av~i~~~l~~~i 425 (472)
T d1wpga4 401 MRMPPWVNIWLLGSICLSMSLHFLI 425 (472)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHHHHH
T ss_pred hhcCccccHHHHHHHHHHHHHHHHH
Confidence 3567789999999888776654433
No 8
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.82 E-value=58 Score=22.05 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=9.9
Q ss_pred cEEEeceeeee
Q 041781 288 GTLEIPFFGLF 298 (418)
Q Consensus 288 g~L~IP~l~id 298 (418)
|.|.||+|.+.
T Consensus 49 gsl~ip~lrve 59 (78)
T d1v8ca2 49 GSLSIPQLRVE 59 (78)
T ss_dssp TTEEEEEEEEE
T ss_pred cceecceEEEE
Confidence 88999999886
No 9
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}
Probab=8.23 E-value=95 Score=23.26 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=18.8
Q ss_pred HhHHHHHHCCce--e--cCChHHHHHH
Q 041781 337 KDADLLVQNEII--G--LGDSELLSTV 359 (418)
Q Consensus 337 ~DV~lL~~~gIi--~--lgsdeeva~l 359 (418)
=|++.++++||. . -.+.+.||++
T Consensus 81 ID~~~a~~~gI~V~ntpg~~~~aVAE~ 107 (129)
T d1gdha2 81 IDLDACKARGIKVGNAPHGATQAREDM 107 (129)
T ss_dssp BCHHHHHHTTCEEECCCCSBHHHHHHH
T ss_pred ccHHHHHhCCCEEEECCCCCchHHHHH
Confidence 499999999999 2 3478889985
No 10
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
Probab=7.28 E-value=2.7e+02 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=20.4
Q ss_pred CChHhHHHHHHCCce----ecCChHHHHHHHHHhhH
Q 041781 334 VTPKDADLLVQNEII----GLGDSELLSTVFHSLVK 365 (418)
Q Consensus 334 ~t~~DV~lL~~~gIi----~lgsdeeva~lFn~L~~ 365 (418)
.|++.-+.|+++||+ .+-|-.-|..-+-.+.+
T Consensus 146 ~t~~a~~~L~~rgI~~~PD~~aNaGGVi~s~~E~~q 181 (242)
T d1v9la1 146 TTPEAERILYERGVVVVPDILANAGGVIMSYLEWVE 181 (242)
T ss_dssp BCHHHHHHHHTTTCEEECHHHHSTHHHHHHHHHHHH
T ss_pred CChhHHHHHHhCCeEEeCchhhcCcchhhhhhhhcc
Confidence 366777999999999 45555555543333333
Done!