BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041782
(821 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 203/760 (26%), Positives = 301/760 (39%), Gaps = 128/760 (16%)
Query: 71 DRDCCSWDGVKCNEDTGHVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLADNNFNYS-- 128
+++ C++DGV C +D I L+ + L L LE L L++++ N S
Sbjct: 33 NKNPCTFDGVTCRDDKVTSIDLS-SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 91
Query: 129 ------KIPSEIMNLSSFSGQV---PSLGNLTKLKCLELSQNNFSSPHSAS--------- 170
+ S ++ +S SG V SLG+ + LK L +S N P S
Sbjct: 92 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 171 --------------FSWIAKQ--TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL 214
W+ EL LA++ + G+ + L +++ N
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 209
Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
+ IP +L + + L L + N+L G I + T+L L++S NQF GP+P LK
Sbjct: 210 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLK 266
Query: 275 RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLA 334
L+YL L N +G + + L +L L LS N+ F G
Sbjct: 267 SLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVP-----------PFFGSC 314
Query: 335 SCNLKXXXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGS 394
S S+N G++P L G L+ ++LS+N +G S
Sbjct: 315 S--------------LLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPES 359
Query: 395 XXXXXXXXXXXXXRSNKLQGPLPIP-----PESTIHYL-VSNNLLTGKLAPWLCNLNSLR 448
SN GP+ +P P++T+ L + NN TGK+ P L N + L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKN------------------ATNLKMIDLSHNLLQGR 490
L LS N+LSG +P L + ++ L+ + L N L G
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
IP L+NCT L ++ L NN++ P W+G L L +L L N F G I P
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRS 536
Query: 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYM--------------------QDQ 590
L +DL+ N F+G +P+ F+ I + +Y+ Q
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGK 650
+ LN + + I S Y S T N G M FL +S N L G
Sbjct: 597 RSEQLNRLSTRNPCNI--TSRVYGGHTSPTFDNNGSMM-------FLD---MSYNMLSGY 644
Query: 651 IPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQLAELTSLA 710
IP I IP +G+L L G IP+ ++ LT L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 711 VFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSR 750
D+S+NNL+G IP+ QF TF + F NPGLCG PL R
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 204/760 (26%), Positives = 301/760 (39%), Gaps = 128/760 (16%)
Query: 71 DRDCCSWDGVKCNEDTGHVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLADNNFNYS-- 128
+++ C++DGV C +D I L+ + L L LE L L++++ N S
Sbjct: 36 NKNPCTFDGVTCRDDKVTSIDLS-SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 94
Query: 129 --KIPSEIMNLS----SFSGQV---PSLGNLTKLKCLELSQNNFSSPHSAS--------- 170
K + + +L S SG V SLG+ + LK L +S N P S
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 171 --------------FSWIAKQ--TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL 214
W+ EL LA++ + G+ + L +++ N
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212
Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
+ IP +L + + L L + N+L G I + T+L L++S NQF GP+P LK
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLK 269
Query: 275 RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLA 334
L+YL L N +G + + L +L L LS N+ F G
Sbjct: 270 SLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVP-----------PFFGSC 317
Query: 335 SCNLKXXXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGS 394
S S+N G++P L G L+ ++LS+N +G S
Sbjct: 318 S--------------LLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPES 362
Query: 395 XXXXXXXXXXXXXRSNKLQGPLPIP-----PESTIHYL-VSNNLLTGKLAPWLCNLNSLR 448
SN GP+ +P P++T+ L + NN TGK+ P L N + L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKN------------------ATNLKMIDLSHNLLQGR 490
L LS N+LSG +P L + ++ L+ + L N L G
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
IP L+NCT L ++ L NN++ P W+G L L +L L N F G I P
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRS 539
Query: 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYM--------------------QDQ 590
L +DL+ N F+G +P+ F+ I + +Y+ Q
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGK 650
+ LN + + I S Y S T N G M FL +S N L G
Sbjct: 600 RSEQLNRLSTRNPCNI--TSRVYGGHTSPTFDNNGSMM-------FLD---MSYNMLSGY 647
Query: 651 IPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQLAELTSLA 710
IP I IP +G+L L G IP+ ++ LT L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 711 VFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSR 750
D+S+NNL+G IP+ QF TF + F NPGLCG PL R
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 130/348 (37%), Gaps = 111/348 (31%)
Query: 412 LQGPLPIP------PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCL 465
L P PIP P Y+ N L G + P + L L L ++H +SG +P L
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 466 SNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
S K L +D S+N L G +P S++ +LP L
Sbjct: 122 SQIKT------LVTLDFSYNALSGTLPPSIS------------------------SLPNL 151
Query: 526 KVLMLQFNRFHGEIGEPDTGFVFPKL-RIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQL 584
+ NR G I PD+ F KL + +S NR +GK+P + A +++ L
Sbjct: 152 VGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209
Query: 585 KYMQDQPGQSLNYILPSSSAYIF--DYSLQYIYAYSITMVNKGIEMNYGKV--SNFLTGI 640
+ ++ +F D + Q I+ + + + GKV S L G+
Sbjct: 210 E---------------GDASVLFGSDKNTQKIH-----LAKNSLAFDLGKVGLSKNLNGL 249
Query: 641 ILSNNKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIP 700
L NN++ G +P ++
Sbjct: 250 DLRNNRIYGTLPQGLT-------------------------------------------- 265
Query: 701 RQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPL 748
QL L SL +VS NNL G+IPQG F+ S++ N LCG PL
Sbjct: 266 -QLKFLHSL---NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 116/301 (38%), Gaps = 56/301 (18%)
Query: 29 QLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCC--SWDGVKCNEDT 86
+LC+ ++ ALLQ K+ L +SW DCC +W GV C+ DT
Sbjct: 1 ELCNPQDKQALLQIKKDL----------GNPTTLSSW---LPTTDCCNRTWLGVLCDTDT 47
Query: 87 G--HVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSF---- 140
V L+L+ L +L +L +L + N IP I L+
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 141 ------SGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGE 193
SG +P L + L L+ S N S S S + L + + G
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP---NLVGITFDGNRISGA 164
Query: 194 FPSWLMNLTQL-TYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG------------ 240
P + ++L T + N+LTG IP ANLN L + L N L G
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 241 -----------YLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGN 289
+ ++G L LDL N+ G +P +++LK L L++ NNL G
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 290 V 290
+
Sbjct: 284 I 284
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 102/250 (40%), Gaps = 33/250 (13%)
Query: 217 PIPNWLANLNRLTILSLKS-NQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKR 275
PIP+ LANL L L + N L G +P I LTQL L ++ G +P +S++K
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 276 LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLAS 335
L LD N LSG + + L +L+ + N +S ++ F + +
Sbjct: 127 LVTLDFSYNALSGT--LPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTI-- 181
Query: 336 CNLKXXXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSX 395
S N++ GKIP N+ NL FV+LS N++ G D
Sbjct: 182 ---------------------SRNRLTGKIPPTFANL---NLAFVDLSRNMLEG-DASVL 216
Query: 396 XXXXXXXXXXXXRSNKLQGPL-PIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLS 453
N L L + ++ L + NN + G L L L L L++S
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 454 HNFLSGVLPQ 463
N L G +PQ
Sbjct: 277 FNNLCGEIPQ 286
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 80/188 (42%), Gaps = 21/188 (11%)
Query: 361 IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSXXXXXXXXXXXXXRSNKLQGPLPIPP 420
+ G IP +L + T L ++ SYN ++G S N++ G +P
Sbjct: 113 VSGAIPDFLSQIKT--LVTLDFSYNALSGTLPPSISSLPNLVGITF-DGNRISGAIPDSY 169
Query: 421 EST----IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATN 476
S +S N LTGK+ P NLN L +DLS N L G S +F + N
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG------DASVLFGSDKN 222
Query: 477 LKMIDLSHNLLQ---GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
+ I L+ N L G++ S L LDL NN+I P L L L L + FN
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 534 RFHGEIGE 541
GEI +
Sbjct: 279 NLCGEIPQ 286
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 128 SKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELSQNNFSSPHSASFSWIAKQTELSW 182
S IP++ L S + +L + LTKL L L N + + F + TEL
Sbjct: 31 SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGT 87
Query: 183 LALANINLIGEFPSWLMN-LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGY 241
L LAN N + P + + LTQL + NQL L +L L L +NQL+
Sbjct: 88 LGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 242 LPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
LT L L LS NQ Q + L +L+ + L N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 201 LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN 260
LT+LT++N D NQL +L L L L +NQL LTQL L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 261 QFQGPVPSSI-SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI 315
Q + +PS + L +L+ L L++N L KL +L L LS N L +
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLT 215
L+L ++ A+F + T+L+WL L L +LT+L + NQL
Sbjct: 40 LDLQSTGLATLSDATFRGL---TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 216 GPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQFQGPVPSSISELK 274
+L +L L L NQL+ LPS + LT+L L L+ NQ Q + +L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 275 RLEYLDLHSNNL 286
L+ L L +N L
Sbjct: 156 NLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 19/152 (12%)
Query: 112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASF 171
L L WL N +Y++ L + S V +LT+L L L+ N +S F
Sbjct: 58 LTKLTWL-----NLDYNQ-------LQTLSAGV--FDDLTELGTLGLANNQLASLPLGVF 103
Query: 172 SWIAKQTELSWLALANINLIGEFPSWLMN-LTQLTYINFDLNQLTGPIPNWLANLNRLTI 230
+ T+L L L N + PS + + LT+L + + NQL L L
Sbjct: 104 DHL---TQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
LSL +NQL+ L +L + L NQF
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 128 SKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELSQNNFSSPHSASFSWIAKQTELSW 182
S IP++ L S + +L + LTKL L L N + + F + TEL
Sbjct: 31 SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGT 87
Query: 183 LALANINLIGEFPSWLMN-LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGY 241
L LAN N + P + + LTQL + NQL L +L L L +NQL+
Sbjct: 88 LGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 242 LPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
LT L L LS NQ Q + L +L+ + L N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 201 LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN 260
LT+LT++N D NQL +L L L L +NQL LTQL L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 261 QFQGPVPSSI-SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI 315
Q + +PS + L +L+ L L++N L KL +L L LS N L +
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLT 215
L+L ++ A+F + T+L+WL L L +LT+L + NQL
Sbjct: 40 LDLQSTGLATLSDATFRGL---TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 216 GPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQFQGPVPSSISELK 274
+L +L L L NQL+ LPS + LT+L L L+ NQ Q + +L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 275 RLEYLDLHSNNL 286
L+ L L +N L
Sbjct: 156 NLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 19/152 (12%)
Query: 112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASF 171
L L WL N +Y++ L + S V +LT+L L L+ N +S F
Sbjct: 58 LTKLTWL-----NLDYNQ-------LQTLSAGV--FDDLTELGTLGLANNQLASLPLGVF 103
Query: 172 SWIAKQTELSWLALANINLIGEFPSWLMN-LTQLTYINFDLNQLTGPIPNWLANLNRLTI 230
+ T+L L L N + PS + + LT+L + + NQL L L
Sbjct: 104 DHL---TQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
LSL +NQL+ L +L + L NQF
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 111 HLRHLEWLSLADNNFN------YSKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELS 159
HLRHLE L L+ N ++ +PS + L F ++ ++ L+KL+ L L
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPS-LNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 160 QNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP 219
N S S +F+ + L L + I E + L L Y+N + L IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE--AAFEGLVNLRYLNLGMCNLKD-IP 172
Query: 220 NWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYL 279
N L L RL L L N+L P LT L L L Q ++ +LK LE L
Sbjct: 173 N-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 280 DLHSNNL 286
+L NNL
Sbjct: 232 NLSHNNL 238
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 144 VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN-LT 202
+ +L LT L L L+ N S + F K T L L L N + P + + LT
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFD---KLTNLKELVLVE-NQLQSLPDGVFDKLT 133
Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
LTY+N NQL L LT L L NQL+ LTQL L L NQ
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 263 QGPVPSSISELKRLEYLDLHSN 284
+ L L+Y+ LH N
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDN 215
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
L +L L+L+HN L LP+ +F TNL +DLS+N LQ T L+
Sbjct: 132 LTNLTYLNLAHNQLQS-LPK-----GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
L L NQ+ + L L+ + L N
Sbjct: 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
+F TNL ++L+HN LQ T L LDL NQ+ + L +LK L
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 530 LQFNRFHGEIGEPDTGF-VFPKLRIIDLSHNRFSGKLPS-KYFQCW 573
L N+ PD F L+ I L N + P +Y W
Sbjct: 188 LYQNQLK---SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 111 HLRHLEWLSLADNNFN------YSKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELS 159
HLRHLE L L+ N ++ +PS + L F ++ ++ L+KL+ L L
Sbjct: 57 HLRHLEILQLSKNLVRKIEVGAFNGLPS-LNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 160 QNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP 219
N S S +F+ + L L + I E + L L Y+N + L IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE--AAFEGLVNLRYLNLGMCNLKD-IP 172
Query: 220 NWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYL 279
N L L RL L L N+L P LT L L L Q ++ +LK LE L
Sbjct: 173 N-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 280 DLHSNNL 286
+L NNL
Sbjct: 232 NLSHNNL 238
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
+S+R LDLSH F+ + NS++F+ +LK+++L++N + + L+ L
Sbjct: 266 SSVRHLDLSHGFVFSL------NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
+L N + +++ S LP++ + LQ N H I + T KL+ +DL N
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKN--HIAIIQDQTFKFLEKLQTLDLRDN 372
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
L L+VL+L++N ++ + + F NL++++LS+NLL + + +
Sbjct: 289 LKDLKVLNLAYNKINKIADEA------FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
+DL N IA I L +L+ L L+ N
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
+F+ ++L+++ L+HN L P ++ T L L L +N++ + + L L++L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILD 532
Query: 530 LQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW 573
+ N+ PD VF L ++D++HN+F + F W
Sbjct: 533 ISRNQLLAP--NPD---VFVSLSVLDITHNKFICECELSTFINW 571
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
++++ +DLSH + R L+ L+L N+I I L L+VL L +N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 535 FHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
GE+ + + PK+ IDL N +
Sbjct: 326 L-GELYSSNF-YGLPKVAYIDLQKNHIA 351
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 8/152 (5%)
Query: 161 NNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPN 220
+N P +F+ +A+ + + L L++ + L L +N N++
Sbjct: 250 HNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308
Query: 221 WLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD 280
L+ L +L+L N L S L ++ +DL N + L++L+ LD
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368
Query: 281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
L N L+ +I S+ +FLS N L
Sbjct: 369 LRDNALTTIHFI-------PSIPDIFLSGNKL 393
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 24/207 (11%)
Query: 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170
HLRHLE L L+ N+ + + +F+G L L LEL N ++ + +
Sbjct: 86 HLRHLEILQLSRNHI-------RTIEIGAFNG-------LANLNTLELFDNRLTTIPNGA 131
Query: 171 FSWIAKQTELSWLALANINLIGEFPSWLMN-LTQLTYINF-DLNQLTGPIPNWLANLNRL 228
F +++K EL WL N I PS+ N + L ++ +L +L+ L+ L
Sbjct: 132 FVYLSKLKEL-WL---RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG 288
L+L LR +P+ + L +L LDLS N P S L L+ L + + +
Sbjct: 188 RYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244
Query: 289 NVYIEELLPKLKSLIVLFLSANNLSLI 315
V L+SL+ + L+ NNL+L+
Sbjct: 245 -VIERNAFDNLQSLVEINLAHNNLTLL 270
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN-LTQLTYINFDLNQL 214
L+L N+ S + F + T L+ L L N + P+ + N LT LTY+N NQL
Sbjct: 33 LDLETNSLKSLPNGVFDEL---TSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 215 TGPIPNWLAN-LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISEL 273
+PN + + L +L L+L +NQL+ LTQL L L NQ + L
Sbjct: 89 QS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 274 KRLEYLDLHSN 284
L+Y+ LH N
Sbjct: 148 TSLQYIWLHDN 158
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 203 QLTYINFDLNQLTGPIPNWLAN-LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
Q TY++ + N L +PN + + L LT L L N+L+ LT LT L+LS NQ
Sbjct: 29 QTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI 315
Q +L +L+ L L++N L + + KL L L L N L +
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQS--LPDGVFDKLTQLKDLRLYQNQLKSV 139
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
+T + D NQ T +P L+N LT++ L +N++ ++TQL L LS N+
Sbjct: 32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 263 QGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
+ P + LK L L LH N++S V E L +L L + AN L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS--VVPEGAFNDLSALSHLAIGANPL 138
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 415 PLPIPPESTIHYLVSNNLLTGKLAP-WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKN 473
P IP + T YL N L P L N L ++DLS+N +S LSN F N
Sbjct: 26 PKGIPRDVTELYLDGNQF---TLVPKELSNYKHLTLIDLSNNRIST-----LSNQS-FSN 76
Query: 474 ATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
T L + LS+N L+ PR+ L L L N I+ + L L L + N
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Query: 534 RFHGE 538
+ +
Sbjct: 137 PLYCD 141
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
+P+ L+N L +DL NN+I+ + + +L L+L +NR P T
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR--CIPPRTFDGLKS 103
Query: 551 LRIIDLSHNRFS 562
LR++ L N S
Sbjct: 104 LRLLSLHGNDIS 115
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 442 CNLNSLRVL------DLSHNFLSG----VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI 491
C+ L+VL D++ +L G ++P+ LSN K +L +IDLS+N +
Sbjct: 17 CSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYK------HLTLIDLSNNRISTLS 70
Query: 492 PRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
+S +N T L L L N++ I P L L++L L N
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 137 LSSFSGQVPS---LGNLTKLKCLELSQN-----------------NFSSPHSASFSWIAK 176
L+ F+ Q+ L NLT L LELS N NFSS +A
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLAN 171
Query: 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
T L L +++ N + + S L LT L + NQ++ P L L L LSL N
Sbjct: 172 LTTLERLDISS-NKVSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
QL+ + SLT LT LDL+ NQ P +S L +L L L +N +S
Sbjct: 228 QLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 197 WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256
+L NLTQ INF NQLT P L NL +L + + +NQ+ P + +LT LT L
Sbjct: 61 YLNNLTQ---INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
L NQ P + L L L+L SN +S
Sbjct: 114 LFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
L NL +L L+LS N +S + T+L+ ++ S N + P LAN T
Sbjct: 125 LKNLTNLNRLELSSNTISDI--------SALSGLTSLQQLNFSSNQVTDLKP--LANLTT 174
Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
LE LD+ +N+++DI S L L L+ L+ N+
Sbjct: 175 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 207
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 441 LCNLNSLRVLDLSHNFLSGV--------LPQCLSNSKIFKNATNLKMI----DLSHNLLQ 488
L NL +L LD+S N +S + L ++ + + T L ++ +LS N Q
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKV 527
+ +LA+ T L LDL NNQI+++ P S L L ELK+
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
LN+L ++ S+N L+ + P KN T L I +++N + P LAN T L
Sbjct: 62 LNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 504 LDLGNNQIADIFP 516
L L NNQI DI P
Sbjct: 112 LTLFNNQITDIDP 124
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
+N+ +++L+HN L+ P + + L LD G N I+ + P LP LKVL LQ
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ--- 81
Query: 535 FHGEIGE-PDTGFVF 548
H E+ + D FVF
Sbjct: 82 -HNELSQISDQTFVF 95
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 24/195 (12%)
Query: 112 LRHLEWLSLADNNFNYSK-------IPSEIMNLSSFSGQVPSLGNLT-------KLKCLE 157
L++LE+L++ DNN +K + + ++LS + +L N T L L
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 158 LSQNNFSSPHSASFSWIAKQTELSWLALANIN--LIGEFPSWLMNLTQLTYINFDLN-QL 214
L++N+ S + +FSW+ Q + L L I L G+ L N+ ++ Y++++ QL
Sbjct: 388 LTKNHISKIANGTFSWLG-QLRILDLGLNEIEQKLSGQEWRGLRNIFEI-YLSYNKYLQL 445
Query: 215 TGPIPNWLANLNRLTI--LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE 272
+ + +L RL + ++LK+ + PS L LT LDLS N +
Sbjct: 446 STSSFALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANINEDLLEG 502
Query: 273 LKRLEYLDLHSNNLS 287
L+ LE LD NNL+
Sbjct: 503 LENLEILDFQHNNLA 517
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 19/70 (27%)
Query: 435 GKLAPWLCN-LNSLRVLDLSHNFLSGVLPQC------------LSNS--KI----FKNAT 475
KL P LC L L+VL+L HN LS + Q +SNS KI FKN
Sbjct: 62 SKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQK 121
Query: 476 NLKMIDLSHN 485
NL +DLSHN
Sbjct: 122 NLIKLDLSHN 131
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
+T+L+L NQLR P+ +QL LD N P L L+ L+L N LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 231 LSLKSNQLRGYLPSQIGSL--TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
LSL +NQL S L T LT LDLS N S S L L YL L NN+
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 137 LSSFSGQVPS---LGNLTKLKCLELSQN-----------------NFSSPHSASFSWIAK 176
L+ F+ Q+ L NLT L LELS N +FSS +A
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
T L L +++ N + + S L LT L + NQ++ P L L L LSL N
Sbjct: 172 LTTLERLDISS-NKVSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
QL+ + SLT LT LDL+ NQ P +S L +L L L +N +S
Sbjct: 228 QLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 197 WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256
+L NLTQ INF NQLT P L NL +L + + +NQ+ P + +LT LT L
Sbjct: 61 YLNNLTQ---INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
L NQ P + L L L+L SN +S
Sbjct: 114 LFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
L NL +L L+LS N +S + T+L+ + S N + P LAN T
Sbjct: 125 LKNLTNLNRLELSSNTISDI--------SALSGLTSLQQLSFSSNQVTDLKP--LANLTT 174
Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
LE LD+ +N+++DI S L L L+ L+ N+
Sbjct: 175 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 207
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 441 LCNLNSLRVLDLSHNFLSGV--------LPQCLSNSKIFKNATNLKMI----DLSHNLLQ 488
L NL +L LD+S N +S + L ++ + + T L ++ +LS N Q
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKV 527
+ +LA+ T L LDL NNQI+++ P S L L ELK+
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
LN+L ++ S+N L+ + P KN T L I +++N + P LAN T L
Sbjct: 62 LNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 504 LDLGNNQIADIFP 516
L L NNQI DI P
Sbjct: 112 LTLFNNQITDIDP 124
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 137 LSSFSGQVPS---LGNLTKLKCLELSQN-----------------NFSSPHSASFSWIAK 176
L+ F+ Q+ L NLT L LELS N +FSS +A
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
T L L +++ N + + S L LT L + NQ++ P L L L LSL N
Sbjct: 172 LTTLERLDISS-NKVSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
QL+ + SLT LT LDL+ NQ P +S L +L L L +N +S
Sbjct: 228 QLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 197 WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256
+L NLTQ INF NQLT P L NL +L + + +NQ+ P + +LT LT L
Sbjct: 61 YLNNLTQ---INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
L NQ P + L L L+L SN +S
Sbjct: 114 LFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
L NL +L L+LS N +S + T+L+ + S N + P LAN T
Sbjct: 125 LKNLTNLNRLELSSNTISDI--------SALSGLTSLQQLSFSSNQVTDLKP--LANLTT 174
Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
LE LD+ +N+++DI S L L L+ L+ N+
Sbjct: 175 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 207
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 441 LCNLNSLRVLDLSHNFLSGV--------LPQCLSNSKIFKNATNLKMI----DLSHNLLQ 488
L NL +L LD+S N +S + L ++ + + T L ++ +LS N Q
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKV 527
+ +LA+ T L LDL NNQI+++ P S L L ELK+
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
LN+L ++ S+N L+ + P KN T L I +++N + P LAN T L
Sbjct: 62 LNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 504 LDLGNNQIADIFP 516
L L NNQI DI P
Sbjct: 112 LTLFNNQITDIDP 124
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 77/184 (41%), Gaps = 40/184 (21%)
Query: 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLS--SFSGQVPSL---GNLTKLKCLELSQNNF 163
L +L +L L L+ N + S + +L SF QV L NLT L+ L++S N
Sbjct: 129 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 188
Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA 223
S S +AK T L L N NQ++ P L
Sbjct: 189 SD-----ISVLAKLTNLESLIATN------------------------NQISDITP--LG 217
Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
L L LSL NQL+ + SLT LT LDL+ NQ P +S L +L L L +
Sbjct: 218 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 273
Query: 284 NNLS 287
N +S
Sbjct: 274 NQIS 277
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 197 WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256
+L NLTQ INF NQLT P L NL +L + + +NQ+ P + +LT LT L
Sbjct: 65 YLNNLTQ---INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 117
Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
L NQ P + L L L+L SN +S
Sbjct: 118 LFNNQITDIDP--LKNLTNLNRLELSSNTIS 146
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 441 LCNLNSLRVLDLSHNFLSGV--------LPQCLSNSKIFKNATNLKMI----DLSHNLLQ 488
L NL +L LD+S N +S + L ++ + + T L ++ +LS N Q
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 231
Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKV 527
+ +LA+ T L LDL NNQI+++ P S L L ELK+
Sbjct: 232 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 31/131 (23%)
Query: 424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLS 483
+ L++NN + + P L NL +L L L +N ++ + P KN TNL ++LS
Sbjct: 92 VDILMNNNQI-ADITP-LANLTNLTGLTLFNNQITDIDP--------LKNLTNLNRLELS 141
Query: 484 HNLL-------------------QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
N + Q + LAN T LE LD+ +N+++DI S L L
Sbjct: 142 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTN 199
Query: 525 LKVLMLQFNRF 535
L+ L+ N+
Sbjct: 200 LESLIATNNQI 210
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
LN+L ++ S+N L+ + P KN T L I +++N + P LAN T L
Sbjct: 66 LNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--LANLTNLTG 115
Query: 504 LDLGNNQIADIFP 516
L L NNQI DI P
Sbjct: 116 LTLFNNQITDIDP 128
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 32/202 (15%)
Query: 128 SKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELSQNNFSSPHSASFSWIAKQTELSW 182
S IP++ L S ++ SL + LTKL+ L L+ N + + F + K E W
Sbjct: 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLW 91
Query: 183 LALANINL--IGEF--------------------PSWLMNLTQLTYINFDLNQLTGPIPN 220
+ + IG F P +LT+LTY++ N+L
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 221 WLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD 280
L L L L +NQL+ LT+L L L NQ + + L++L+ L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 281 LHSN----NLSGNVYIEELLPK 298
L N +G +Y+ + L K
Sbjct: 212 LQENPWDCTCNGIIYMAKWLKK 233
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
L NL LR L N L + P ++F + T L + L +N LQ T
Sbjct: 108 LVNLAELR---LDRNQLKSLPP------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF-VFPKLRIIDLSHN 559
L+ L L NNQ+ + L ELK L L N+ P+ F KL+++ L N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK---RVPEGAFDSLEKLKMLQLQEN 215
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 77/184 (41%), Gaps = 40/184 (21%)
Query: 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLS--SFSGQVPSL---GNLTKLKCLELSQNNF 163
L +L +L L L+ N + S + +L SF QV L NLT L+ L++S N
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 189
Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA 223
S S +AK T L L N NQ++ P L
Sbjct: 190 SD-----ISVLAKLTNLESLIATN------------------------NQISDITP--LG 218
Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
L L LSL NQL+ + SLT LT LDL+ NQ P +S L +L L L +
Sbjct: 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274
Query: 284 NNLS 287
N +S
Sbjct: 275 NQIS 278
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 197 WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256
+L NLTQ INF NQLT P L NL +L + + +NQ+ P + +LT LT L
Sbjct: 66 YLNNLTQ---INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118
Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
L NQ P + L L L+L SN +S
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTIS 147
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 441 LCNLNSLRVLDLSHNFLSGV--------LPQCLSNSKIFKNATNLKMI----DLSHNLLQ 488
L NL +L LD+S N +S + L ++ + + T L ++ +LS N Q
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232
Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKV 527
+ +LA+ T L LDL NNQI+++ P S L L ELK+
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 31/131 (23%)
Query: 424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLS 483
+ L++NN + + P L NL +L L L +N ++ + P KN TNL ++LS
Sbjct: 93 VDILMNNNQI-ADITP-LANLTNLTGLTLFNNQITDIDP--------LKNLTNLNRLELS 142
Query: 484 HNLL-------------------QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
N + Q + LAN T LE LD+ +N+++DI S L L
Sbjct: 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTN 200
Query: 525 LKVLMLQFNRF 535
L+ L+ N+
Sbjct: 201 LESLIATNNQI 211
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
LN+L ++ S+N L+ + P KN T L I +++N + P LAN T L
Sbjct: 67 LNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116
Query: 504 LDLGNNQIADIFP 516
L L NNQI DI P
Sbjct: 117 LTLFNNQITDIDP 129
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 185 LANINLIGEFPS--WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL 242
L N N +G S L L + NQLTG PN + + L L N+++
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 243 PSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYI 292
L QL L+L NQ +P S L L L+L SN + N ++
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 465 LSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
+S+ +F +L ++L N L G P + + ++ L LG N+I +I L +
Sbjct: 44 ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103
Query: 525 LKVLMLQFNRF 535
LK L L N+
Sbjct: 104 LKTLNLYDNQI 114
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 197 WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256
+L NLTQ INF NQLT P L NL +L + + +NQ+ P + +LT LT L
Sbjct: 61 YLNNLTQ---INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
L NQ P + L L L+L SN +S
Sbjct: 114 LFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 77/184 (41%), Gaps = 40/184 (21%)
Query: 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLS--SFSGQVPSL---GNLTKLKCLELSQNNF 163
L +L +L L L+ N + S + +L +F QV L NLT L+ L++S N
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA 223
S S +AK T L L N NQ++ P L
Sbjct: 185 SD-----ISVLAKLTNLESLIATN------------------------NQISDITP--LG 213
Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
L L LSL NQL+ + SLT LT LDL+ NQ P +S L +L L L +
Sbjct: 214 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 284 NNLS 287
N +S
Sbjct: 270 NQIS 273
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 441 LCNLNSLRVLDLSHNFLSGV--------LPQCLSNSKIFKNATNLKMI----DLSHNLLQ 488
L NL +L LD+S N +S + L ++ + + T L ++ +LS N Q
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKV 527
+ +LA+ T L LDL NNQI+++ P S L L ELK+
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 31/131 (23%)
Query: 424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLS 483
+ L++NN + + P L NL +L L L +N ++ + P KN TNL ++LS
Sbjct: 88 VDILMNNNQI-ADITP-LANLTNLTGLTLFNNQITDIDP--------LKNLTNLNRLELS 137
Query: 484 HNLL-------------------QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
N + Q + LAN T LE LD+ +N+++DI S L L
Sbjct: 138 SNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTN 195
Query: 525 LKVLMLQFNRF 535
L+ L+ N+
Sbjct: 196 LESLIATNNQI 206
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
LN+L ++ S+N L+ + P KN T L I +++N + P LAN T L
Sbjct: 62 LNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 504 LDLGNNQIADIFP 516
L L NNQI DI P
Sbjct: 112 LTLFNNQITDIDP 124
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 197 WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256
+L NLTQ INF NQLT P L NL +L + + +NQ+ P + +LT LT L
Sbjct: 61 YLNNLTQ---INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
L NQ P + L L L+L SN +S
Sbjct: 114 LFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 77/184 (41%), Gaps = 40/184 (21%)
Query: 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLS--SFSGQVPSL---GNLTKLKCLELSQNNF 163
L +L +L L L+ N + S + +L +F QV L NLT L+ L++S N
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA 223
S S +AK T L L N NQ++ P L
Sbjct: 185 SD-----ISVLAKLTNLESLIATN------------------------NQISDITP--LG 213
Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
L L LSL NQL+ + SLT LT LDL+ NQ P +S L +L L L +
Sbjct: 214 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 284 NNLS 287
N +S
Sbjct: 270 NQIS 273
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 441 LCNLNSLRVLDLSHNFLSGV--------LPQCLSNSKIFKNATNLKMI----DLSHNLLQ 488
L NL +L LD+S N +S + L ++ + + T L ++ +LS N Q
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKV 527
+ +LA+ T L LDL NNQI+++ P S L L ELK+
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 410 NKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469
N+L P+ + + ++ NN + P L NL +L L L +N ++ + P
Sbjct: 73 NQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP------- 124
Query: 470 IFKNATNLKMIDLSHNLL-------------------QGRIPRSLANCTMLEFLDLGNNQ 510
KN TNL ++LS N + Q + LAN T LE LD+ +N+
Sbjct: 125 -LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNK 183
Query: 511 IADIFPSWLGTLPELKVLMLQFNRF 535
++DI S L L L+ L+ N+
Sbjct: 184 VSDI--SVLAKLTNLESLIATNNQI 206
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
LN+L ++ S+N L+ + P KN T L I +++N + P LAN T L
Sbjct: 62 LNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 504 LDLGNNQIADIFP 516
L L NNQI DI P
Sbjct: 112 LTLFNNQITDIDP 124
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
TN+ +++L+HN L+ + + L LD+G N I+ + P LP LKVL LQ
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ--- 86
Query: 535 FHGEIGE-PDTGFVF 548
H E+ + D F F
Sbjct: 87 -HNELSQLSDKTFAF 100
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 108/252 (42%), Gaps = 32/252 (12%)
Query: 112 LRHLEWLSLADNNFN--YSKIPSEIMNLS--SFSGQVPSLGNLTK----------LKCLE 157
L+ LE L++ DN+ S + + ++NL S S SL LT L L
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 392
Query: 158 LSQNNFSSPHSASFSWIAKQTELSWLALANI--NLIGEFPSWLMNLTQLTYINFDLN-QL 214
L++N S S +FSW+ E+ L L I L G+ L N+ ++ Y++++ QL
Sbjct: 393 LTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEI-YLSYNKYLQL 450
Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
T + +L RL + + + PS L LT LDLS N + L+
Sbjct: 451 TRNSFALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLE 509
Query: 275 RLEYLDLHSNNLS---------GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQ 325
+LE LDL NNL+ G +Y L L L +L L +N I +
Sbjct: 510 KLEILDLQHNNLARLWKHANPGGPIY---FLKGLSHLHILNLESNGFDEIPVEVFKDLFE 566
Query: 326 NKFVFLGLASCN 337
K + LGL + N
Sbjct: 567 LKIIDLGLNNLN 578
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
+T+L+L NQLR + +QLT+LD+ N P +L L+ L+L N LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%)
Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
+QLT ++ N ++ P L L +L+L+ N+L T LT L L N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSG 288
Q + + K L LDL N LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
TN+ +++L+HN L+ + + L LD+G N I+ + P LP LKVL LQ
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ--- 81
Query: 535 FHGEIGE-PDTGFVF 548
H E+ + D F F
Sbjct: 82 -HNELSQLSDKTFAF 95
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 108/252 (42%), Gaps = 32/252 (12%)
Query: 112 LRHLEWLSLADNNFN--YSKIPSEIMNLS--SFSGQVPSLGNLTK----------LKCLE 157
L+ LE L++ DN+ S + + ++NL S S SL LT L L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 158 LSQNNFSSPHSASFSWIAKQTELSWLALANI--NLIGEFPSWLMNLTQLTYINFDLN-QL 214
L++N S S +FSW+ E+ L L I L G+ L N+ ++ Y++++ QL
Sbjct: 388 LTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEI-YLSYNKYLQL 445
Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
T + +L RL + + + PS L LT LDLS N + L+
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
Query: 275 RLEYLDLHSNNLS---------GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQ 325
+LE LDL NNL+ G +Y L L L +L L +N I +
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIY---FLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561
Query: 326 NKFVFLGLASCN 337
K + LGL + N
Sbjct: 562 LKIIDLGLNNLN 573
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
+T+L+L NQLR + +QLT+LD+ N P +L L+ L+L N LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%)
Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
+QLT ++ N ++ P L L +L+L+ N+L T LT L L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSG 288
Q + + K L LDL N LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
TN+ +++L+HN L+ + + L LD+G N I+ + P LP LKVL LQ
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ--- 91
Query: 535 FHGEIGE-PDTGFVF 548
H E+ + D F F
Sbjct: 92 -HNELSQLSDKTFAF 105
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 108/252 (42%), Gaps = 32/252 (12%)
Query: 112 LRHLEWLSLADNNFN--YSKIPSEIMNLS--SFSGQVPSLGNLTK----------LKCLE 157
L+ LE L++ DN+ S + + ++NL S S SL LT L L
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 397
Query: 158 LSQNNFSSPHSASFSWIAKQTELSWLALANI--NLIGEFPSWLMNLTQLTYINFDLN-QL 214
L++N S S +FSW+ E+ L L I L G+ L N+ ++ Y++++ QL
Sbjct: 398 LTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEI-YLSYNKYLQL 455
Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
T + +L RL + + + PS L LT LDLS N + L+
Sbjct: 456 TRNSFALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLE 514
Query: 275 RLEYLDLHSNNLS---------GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQ 325
+LE LDL NNL+ G +Y L L L +L L +N I +
Sbjct: 515 KLEILDLQHNNLARLWKHANPGGPIY---FLKGLSHLHILNLESNGFDEIPVEVFKDLFE 571
Query: 326 NKFVFLGLASCN 337
K + LGL + N
Sbjct: 572 LKIIDLGLNNLN 583
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
+T+L+L NQLR + +QLT+LD+ N P +L L+ L+L N LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%)
Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
+QLT ++ N ++ P L L +L+L+ N+L T LT L L N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSG 288
Q + + K L LDL N LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 12/195 (6%)
Query: 123 NNFNYSKIPS-EIMNLS----SFSGQVP-SLGNLTKLKCLELSQNNFSSPHSASFSWIAK 176
N F+ +PS E ++LS SF G S T LK L+LS N + S++F + +
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ 397
Query: 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
L + +N+ + EF S ++L L Y++ L+ L +L + N
Sbjct: 398 LEHLDF-QHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 237 QLR-GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEEL 295
+ +LP L LT LDLS Q + P++ + L L+ L++ SN L + +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGI 513
Query: 296 LPKLKSLIVLFLSAN 310
+L SL ++L N
Sbjct: 514 FDRLTSLQKIWLHTN 528
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 477 LKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
LK ++++HNL+Q ++P +N T LE LDL +N+I I+ + L L ++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 444 LNSLRVLDLSHN-FLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLE 502
L+SL VL ++ N F LP IF NL +DLS L+ P + + + L+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPD------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
L++ +NQ+ + L L+ + L N
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 195 PSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTA 254
P L LT+++ QL P +L+ L +L++ SNQL+ LT L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 255 LDLSCNQFQGPVPSSISELKRLEYL 279
+ L N + P R++YL
Sbjct: 523 IWLHTNPWDCSCP-------RIDYL 540
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 143 QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT 202
+ + N T+L L++ N + S +A ++L+WL + N I + + + +LT
Sbjct: 213 DITPVANXTRLNSLKIGNNKITD-----LSPLANLSQLTWLEIG-TNQISDI-NAVKDLT 265
Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
+L +N NQ++ + L NL++L L L +NQL IG LT LT L LS N
Sbjct: 266 KLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Query: 263 QGPVP-SSISELKRLEY 278
P +S+S+ ++
Sbjct: 324 TDIRPLASLSKXDSADF 340
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 15/172 (8%)
Query: 410 NKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469
N+++ P+ +++HY + + P + N L L + +N ++ + P
Sbjct: 187 NQIEDISPLASLTSLHYFTAYVNQITDITP-VANXTRLNSLKIGNNKITDLSP------- 238
Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
N + L +++ N Q ++ + T L+ L++G+NQI+DI S L L +L L
Sbjct: 239 -LANLSQLTWLEIGTN--QISDINAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLF 293
Query: 530 LQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANK 581
L N+ E E G L + LS N + P ++ AN+
Sbjct: 294 LNNNQLGNEDXEVIGGLT--NLTTLFLSQNHITDIRPLASLSKXDSADFANQ 343
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 112 LRHLEWLSLADNNFNY--SKIPSEIMNLSSFSGQVPSL-----GNLTKLKCLELSQNNFS 164
L LE L L+ N K+P + L ++ + L ++ +EL N
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 165 SP--HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL 222
S + +F + K LS++ +A+ N I P L LT ++ D N++T L
Sbjct: 159 SSGIENGAFQGMKK---LSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASL 212
Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
LN L L L N + + + L L L+ N+ VP +++ K ++ + LH
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271
Query: 283 SNNLSG 288
+NN+S
Sbjct: 272 NNNISA 277
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 435 GKLAPWLCNLNSLRVLDLSHNFLSGV---LPQC-----LSNSKI-------FKNATNLKM 479
G + P+ C + LRV+ S L V LP L N+KI FKN NL
Sbjct: 22 GPVCPFRCQCH-LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKV 527
+ L +N + P + A LE L L NQ+ ++ TL EL+V
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV 128
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 112 LRHLEWLSLADNNFNY--SKIPSEIMNLSSFSGQVPSL-----GNLTKLKCLELSQNNFS 164
L LE L L+ N K+P + L ++ + L ++ +EL N
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 165 SP--HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL 222
S + +F + K LS++ +A+ N I P L LT ++ D N++T L
Sbjct: 159 SSGIENGAFQGMKK---LSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASL 212
Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
LN L L L N + + + L L L+ N+ VP +++ K ++ + LH
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271
Query: 283 SNNLSG 288
+NN+S
Sbjct: 272 NNNISA 277
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 435 GKLAPWLCNLNSLRVLDLSHNFLSGV---LPQC-----LSNSKI-------FKNATNLKM 479
G + P+ C + LRV+ S L V LP L N+KI FKN NL
Sbjct: 22 GPVCPFRCQCH-LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKV 527
+ L +N + P + A LE L L NQ+ ++ TL EL+V
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV 128
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSC 259
LTQLT ++ NQ+ L +LTIL L N+L+ LTQL L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 260 NQFQGPVPSSI-SELKRLEYLDLHSN 284
NQ + VP I L L+ + LH+N
Sbjct: 110 NQLKS-VPDGIFDRLTSLQKIWLHTN 134
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG 288
T L L+SN+L+ LTQLT L LS NQ Q +L +L L LH N L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 289 NVYIEELLPKLKSLIVLFLSANNLSLI 315
+ KL L L L N L +
Sbjct: 91 --LPNGVFDKLTQLKELALDTNQLKSV 115
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 156 LELSQNNFSS-PHSASFSWIAKQTELSWLALANINLIGEFPSWLMN-LTQLTYINFDLNQ 213
LEL N S PH K T+L+ L+L+ N I P + + LT+LT + N+
Sbjct: 33 LELESNKLQSLPHGV----FDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 214 LTGPIPNWLAN-LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE 272
L +PN + + L +L L+L +NQL+ LT L + L N + P
Sbjct: 88 LQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP----- 141
Query: 273 LKRLEYL 279
R++YL
Sbjct: 142 --RIDYL 146
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 205 TYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG 264
T + + N+L L +LT LSL NQ++ LT+LT L L N+ Q
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 265 PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN 310
+L +L+ L L +N L + + +L SL ++L N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTN 134
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 481 DLSHNLLQGRIPRSLANCTMLEFLDLG-NNQIADIFPSWLGTLPELKVLMLQFNRFHGEI 539
D+SH+ I + + +DL N I DI P L TLPELK L +QF+ H
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIXP--LKTLPELKSLNIQFDGVHDYR 175
Query: 540 GEPDTGFVFPKL 551
G D FPKL
Sbjct: 176 GIED----FPKL 183
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 26/169 (15%)
Query: 156 LELSQNNFSSPHSASFSWI--------------AKQTELSWLALANINLIG----EFPSW 197
L+ SQ+N + P S +++ A+ L+++ LANIN+ E+
Sbjct: 8 LKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQXNSLTYITLANINVTDLTGIEYAHN 67
Query: 198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL 257
+ +LT + N ++G L+NL RL I + +P+ LT LT LD+
Sbjct: 68 IKDLTINNIHATNYNPISG-----LSNLERLRIXG--KDVTSDKIPNLS-GLTSLTLLDI 119
Query: 258 SCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLF 306
S + + + I+ L ++ +DL N ++ + LP+LKSL + F
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIXPLKTLPELKSLNIQF 168
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 123 NNFNYSKIPS-EIMNLS----SFSGQVP-SLGNLTKLKCLELSQNNFSSPHSASFSWIAK 176
N F+ +PS E ++LS SF G S T LK L+LS N + S++F + +
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ 397
Query: 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
L + +N+ + EF S ++L L Y++ L+ L +L + N
Sbjct: 398 LEHLDF-QHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 237 QLR-GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
+ +LP L LT LDLS Q + P++ + L L+ L++ NN
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 477 LKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
LK ++++HNL+Q ++P +N T LE LDL +N+I I+ + L L ++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 36/164 (21%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR-IPRSLANCTMLE 502
L +L LD+SH ++ + IF ++L+++ ++ N Q +P L
Sbjct: 420 LRNLIYLDISHTHTR------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
FLDL Q+ + P+ +L L+VL ++SHN F
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVL--------------------------NMSHNNFF 507
Query: 563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI 606
L + ++C N+++V + S L ++ Q L + PSS A++
Sbjct: 508 S-LDTFPYKCLNSLQVLDYS-LNHIMTSKKQELQH-FPSSLAFL 548
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 144 VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN-LT 202
+ +L LT L L L+ N S + F K T L L L N + P + + LT
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFD---KLTNLKELVLVE-NQLQSLPDGVFDKLT 133
Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
LTY+ NQL L LT L L +NQL+ LTQL L L+ NQ
Sbjct: 134 NLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Query: 263 QGPVPSSI 270
+ VP +
Sbjct: 194 KS-VPDGV 200
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 196 SWLMNLTQLTYINFDLNQLTGPIPNWLAN-LNRLTILSLKSNQLRGYLPSQIGSLTQLTA 254
S L LT LTY+ NQL +PN + + L L L L NQL+ LT LT
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 255 LDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
L L NQ Q +L L LDL +N L E + KL L L L+ N L
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS--LPEGVFDKLTQLKQLSLNDNQL 193
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
+F TNL + L HN LQ T L LDL NNQ+ + L +LK L
Sbjct: 128 VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLS 187
Query: 530 LQFNRFHGEIGEPDTGFVFPKLRIIDLSH 558
L N+ PD F R+ L+H
Sbjct: 188 LNDNQLK---SVPDGVFD----RLTSLTH 209
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS--LANC 498
LC +++ L+H ++ G + + + NL+ +DLSHN ++ S L N
Sbjct: 313 LCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 499 TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF 546
+ L+ L+L +N+ + P+L++L L F R H I P + F
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH--INAPQSPF 418
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 96/244 (39%), Gaps = 24/244 (9%)
Query: 79 GVKCNEDTGHVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLADNNFNYSKIPSEIMNLS 138
GV C E G++ L+L+ L +L HL+ L+L+ N E + L
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN---------EPLGLQ 389
Query: 139 SFS-GQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSW 197
S + + P L L L L N SP +L +N +L+ P
Sbjct: 390 SQAFKECPQL-ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV- 447
Query: 198 LMNLTQLTYINFDLNQL-TGPI--PNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTA 254
L ++N N G I N L + L +L L S L SL +++
Sbjct: 448 ------LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH 501
Query: 255 LDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL 314
+DLS N S+S LK + YL+L +N++ N+ LLP L + LS N L
Sbjct: 502 VDLSHNSLTCDSIDSLSHLKGI-YLNLAANSI--NIISPRLLPILSQQSTINLSHNPLDC 558
Query: 315 ITRN 318
N
Sbjct: 559 TCSN 562
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 477 LKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
LK ++++HNL+Q ++P +N T LE LDL +N+I I+ + L L ++
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 123 NNFNYSKIPS-EIMNLS----SFSG--QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIA 175
N F+ +PS E ++LS SF G G ++ LK L+LS N + S++F +
Sbjct: 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGVIT-MSSNFLGLE 420
Query: 176 KQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKS 235
+ L + +N+ + EF S ++L L Y++ L+ L +L +
Sbjct: 421 QLEHLDF-QHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 236 NQLR-GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
N + +LP L LT LDLS Q + P++ + L L+ L++ NN
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 36/165 (21%)
Query: 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR-IPRSLANCTML 501
+L +L LD+SH ++ + IF ++L+++ ++ N Q +P L
Sbjct: 443 SLRNLIYLDISHTHTR------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496
Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
FLDL Q+ + P+ +L L+VL ++SHN F
Sbjct: 497 TFLDLSQCQLEQLSPTAFNSLSSLQVL--------------------------NMSHNNF 530
Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI 606
L + ++C N+++V + S L ++ Q L + PSS A++
Sbjct: 531 FS-LDTFPYKCLNSLQVLDYS-LNHIMTSKKQELQH-FPSSLAFL 572
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 153 LKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLN 212
+K +LS++ + + FS +L+ LA IN I + W LT L +N N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLT-LAQNEINKIDDNAFW--GLTHLLKLNLSQN 333
Query: 213 QLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI-S 271
L NL++L +L L N +R L L L L NQ + VP I
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFD 392
Query: 272 ELKRLEYLDLHSN 284
L L+ + LH+N
Sbjct: 393 RLTSLQKIWLHTN 405
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
L L L+LS NFL + +S++F+N L+++DLS+N ++ +S L+
Sbjct: 322 LTHLLKLNLSQNFLGSI------DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375
Query: 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
L L NQ+ + L L+ + L N
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 469 KIFKNA----TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
KI NA T+L ++LS N L R N LE LDL N I + LP
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372
Query: 525 LKVLMLQFNR 534
LK L L N+
Sbjct: 373 LKELALDTNQ 382
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 415 PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNA 474
P +PP + L N++ ++ P + L+ LRVL LSHN + + + +F
Sbjct: 47 PKDLPPRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSL------DFHVFLFN 99
Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTM--LEFLDLGNNQIADIFP--SWLGTLPELKVLML 530
+L+ +D+SHN LQ ++ C M L LDL N D+ P G L +L L L
Sbjct: 100 QDLEYLDVSHNRLQN-----ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGL 153
Query: 531 QFNRF 535
+F
Sbjct: 154 SAAKF 158
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
S+ VL+LS N L+G + +CL +K++DL +N + IP+ + + L+ L+
Sbjct: 429 SILVLNLSSNMLTGSVFRCL--------PPKVKVLDLHNNRIMS-IPKDVTHLQALQELN 479
Query: 506 LGNNQIADIFPSWLGTLPELKVLMLQFN 533
+ +NQ+ + L L+ + L N
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 207 INFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPV 266
+N N LTG + L ++ +L L +N++ +P + L L L+++ NQ +
Sbjct: 433 LNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVP 489
Query: 267 PSSISELKRLEYLDLHSN 284
L L+Y+ LH N
Sbjct: 490 DGVFDRLTSLQYIWLHDN 507
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 477 LKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
LK ++++HNL+Q ++P +N T LE LDL +N+I I+ + L L ++
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 477 LKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
LK ++++HNL+Q ++P +N T LE LDL +N+I I+ + L L ++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 477 LKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
LK ++++HNL+Q ++P +N T LE LDL +N+I I+ + L L ++
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 477 LKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
LK ++++HNL+Q ++P +N T LE LDL +N+I I+ + L L ++
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 192 GEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLT 250
P+ + Q+ Y++ NQ+T P +L L L L SNQL G LP + SLT
Sbjct: 32 ASVPAGIPTNAQILYLHD--NQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 251 QLTALDLSCNQFQGPVPSSI-SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA 309
QLT LDL NQ +PS++ L L+ L + N L+ + + +L L L L
Sbjct: 89 QLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT---ELPRGIERLTHLTHLALDQ 144
Query: 310 NNLSLI 315
N L I
Sbjct: 145 NQLKSI 150
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYIN 208
+LT+L L+L N + SA F + EL N + E P + LT LT++
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL----FMCCNKLTELPRGIERLTHLTHLA 141
Query: 209 FDLNQLTGPIPNWLANLNRLTILS 232
D NQL IP+ +RL+ L+
Sbjct: 142 LDQNQLKS-IPH--GAFDRLSSLT 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 477 LKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
LK ++++HNL+Q ++P +N T LE LDL +N+I I+ + L L ++
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 191 IGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSL 249
+ P+ + TQ+ Y+ +D NQ+T P L +LT L L +NQL LP+ + L
Sbjct: 29 LASVPTGIPTTTQVLYL-YD-NQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 85
Query: 250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
TQLT L L+ NQ + + LK L ++ L +N
Sbjct: 86 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
+L L NQ+ P LTQLT LDL NQ +L +L L L+ N L
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 191 IGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSL 249
+ P+ + TQ+ Y+ +D NQ+T P L +LT L L +NQL LP+ + L
Sbjct: 21 LASVPTGIPTTTQVLYL-YD-NQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
TQLT L L+ NQ + + LK L ++ L +N
Sbjct: 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
+L L NQ+ P LTQLT LDL NQ +L +L L L+ N L
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR--IPRSLANC 498
LC +N+ L ++ G + + ++ + NL+ +DLSH+ ++ L N
Sbjct: 315 LCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNL 374
Query: 499 TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLS 557
L++L+L N+ + P+L++L + F H + P + F LR+++LS
Sbjct: 375 RHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLH--VKAPHSPFQNLHLLRVLNLS 432
Query: 558 H 558
H
Sbjct: 433 H 433
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 36/217 (16%)
Query: 79 GVKCNEDTGHVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLA--------DNNFN---- 126
G +C E ++ KL+L+ L +LRHL++L+L+ D F
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ 400
Query: 127 -----------YSKIPS---------EIMNLSSF---SGQVPSLGNLTKLKCLELSQNNF 163
+ K P ++NLS + L L L+ L L N+F
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA 223
+ + + L L L++ NL+ L + +++ N LTG + L+
Sbjct: 461 QDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALS 520
Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN 260
+L L L++ SN +R P + +L+Q + ++LS N
Sbjct: 521 HLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 27/183 (14%)
Query: 376 NLQFVNLSYNLITGFDRGSXXXXXXXXXXXXXRSNKLQGPLPIPPESTIHYL----VSNN 431
+LQ++NLSYN G + + ++ L P P +H L +S+
Sbjct: 376 HLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH-LHVKAPHSPFQNLHLLRVLNLSHC 434
Query: 432 LLTGKLAPWLCNLNSLRVLDLSHN-FLSG-----------------VLPQC--LS-NSKI 470
LL L L LR L+L N F G +L C LS + +
Sbjct: 435 LLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQA 494
Query: 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLML 530
F N+ +DLSHN L G +L++ L +L++ +N I I P L L + ++ L
Sbjct: 495 FHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINL 553
Query: 531 QFN 533
N
Sbjct: 554 SHN 556
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCT 499
+ L S++ LDL+ ++ V P +NL+++ L N + P LA T
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTP--------LAGLSNLQVLYLDLNQITNISP--LAGLT 157
Query: 500 MLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
L++L +GNNQ+ D+ P L L +L L N+
Sbjct: 158 NLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKI 191
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 64/150 (42%), Gaps = 28/150 (18%)
Query: 147 LGNLTKLKCLELSQN-----------------NFSSPHSASFSWIAKQTELSWLALANIN 189
L NLTK+ LELS N + +S + +A + L L L ++N
Sbjct: 87 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL-DLN 145
Query: 190 LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSL 249
I S L LT L Y++ NQ+ P LANL++LT L N++ P + SL
Sbjct: 146 QITNI-SPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASL 200
Query: 250 TQLTALDLSCNQFQGPVPSSISELKRLEYL 279
L + L NQ S +S L L L
Sbjct: 201 PNLIEVHLKDNQI-----SDVSPLANLSNL 225
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 212 NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSI 270
NQ+T P L NL ++T L L N L+ S I L + LDL+ Q P + +
Sbjct: 79 NQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGL 134
Query: 271 SELKRLEYLDLH 282
S L+ L YLDL+
Sbjct: 135 SNLQVL-YLDLN 145
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 188 INLIGEF-PSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLR 239
IN I + P +LTQLTY+N +NQLT L +LT L+L NQL+
Sbjct: 49 INQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK 101
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
+L L NQ+ P SLTQLT L+L+ NQ +L +L +L LH N L
Sbjct: 44 VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 191 IGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT 250
+ P+ + TQ+ ++ +NQ+T P +L +LT L+L NQL LT
Sbjct: 31 LASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
+LT L L NQ + LK L ++ L +N
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFD 210
T LK L+LS N + S++F + + L + +N+ + EF S ++L L Y++
Sbjct: 78 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF-QHSNLKQMSEF-SVFLSLRNLIYLDIS 134
Query: 211 LNQLTGPIPNWLANLNRLTILSLKSNQLR-GYLPSQIGSLTQLTALDLSCNQFQGPVPSS 269
L+ L +L + N + +LP L LT LDLS Q + P++
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 270 ISELKRLEYLDLHSNNL 286
+ L L+ L++ NN
Sbjct: 195 FNSLSSLQVLNMSHNNF 211
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCN--QFQGPVPSSISELKRLEYLDLHSN-- 284
T L L+SN+L+ LTQLT L LS N F+G S L+YLDL N
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 285 -NLSGNVYIEELLPKLK---------SLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLA 334
+S N E L L S +FLS NL + + + R+ +F GL+
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 335 S 335
S
Sbjct: 151 S 151
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 36/165 (21%)
Query: 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR-IPRSLANCTML 501
+L +L LD+SH ++ + IF ++L+++ ++ N Q +P L
Sbjct: 124 SLRNLIYLDISHTHTR------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
FLDL Q+ + P+ +L L+VL ++SHN F
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVL--------------------------NMSHNNF 211
Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI 606
L + ++C N+++V + S L ++ Q L + PSS A++
Sbjct: 212 FS-LDTFPYKCLNSLQVLDYS-LNHIMTSKKQELQHF-PSSLAFL 253
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 42/172 (24%)
Query: 137 LSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLA-----LANINLI 191
++ +G + L LTKL C + NN ++ +++ T L++LA L N+++
Sbjct: 54 ITDMTG-IEKLTGLTKLIC---TSNNITTLD------LSQNTNLTYLACDSNKLTNLDVT 103
Query: 192 GEFPSWLMNLTQLTYINFDLNQLT------GPIPNWL-ANLNRLTILSLKSN----QLRG 240
LT+LTY+N D N+LT P+ +L N LT + + N +L
Sbjct: 104 P--------LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDC 155
Query: 241 YLPSQIGSL-----TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
+L +I L TQLT LD S N+ +S+ K L L+ +NN++
Sbjct: 156 HLNKKITKLDVTPQTQLTTLDCSFNKI---TELDVSQNKLLNRLNCDTNNIT 204
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 112 LRHLEWLSLADNNFNY--SKIPSEIMNLSSFSGQVPSL-----GNLTKLKCLELSQNNF- 163
LR L+ L ++ N+ +PS ++ L ++ + L + C+E+ N
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 164 -SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL 222
S +F + +L++L ++ L G P L L ++ D N++ L
Sbjct: 161 NSGFEPGAFDGL----KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDL 213
Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
++L L L NQ+R + L L L L N+ VP+ + +LK L+ + LH
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272
Query: 283 SNNLS 287
+NN++
Sbjct: 273 TNNIT 277
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 4/170 (2%)
Query: 146 SLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLT 205
S + L L L N + +A+F+ + +L A + ++ P+ L L
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD--PTTFRGLGHLH 107
Query: 206 YINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGP 265
++ D L P L L L L+ N L+ + L LT L L N+
Sbjct: 108 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSV 167
Query: 266 VPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI 315
+ L L+ L LH N+++ V+ L L+ L+L ANNLS++
Sbjct: 168 PEHAFRGLHSLDRLLLHQNHVA-RVHPHAFR-DLGRLMTLYLFANNLSML 215
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN-QFQGPVPSSISELKRLEYLDLHSNNL 286
LTIL L SN L G + LT L LDLS N Q + P++ L L L L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 287 SGNVYIEELLP----KLKSLIVLFLSANNLSLITRNT 319
+EL P L +L L+L NNL + NT
Sbjct: 117 ------QELGPGLFRGLAALQYLYLQDNNLQALPDNT 147
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 175 AKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLK 234
+Q + W ALA+ +GE Q+ YI ++ N T P+ L +L L
Sbjct: 288 GEQLKDDWQALADA-PVGE-------KIQIIYIGYN-NLKTFPVETSLQKXKKLGXLECL 338
Query: 235 SNQLRGYLPSQIGSLTQLTALDLSCNQ 261
NQL G LP+ GS +L +L+L+ NQ
Sbjct: 339 YNQLEGKLPA-FGSEIKLASLNLAYNQ 364
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 191 IGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT 250
+ P+ + TQ+ Y+ +D N++T P L +LT L L +NQL LT
Sbjct: 21 LASVPTGIPTTTQVLYL-YD-NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
QLT L L+ NQ + + L+ L ++ L +N
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 43/175 (24%)
Query: 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170
HL LE L L N E+ ++ + Q+ SL L ++SQN S
Sbjct: 346 HLTELETLILQMNQLK------ELSKIAEMTTQMKSLQQL------DISQN--------S 385
Query: 171 FSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230
S+ K+ + SW L +N N LT I L R+ +
Sbjct: 386 VSYDEKKGDCSWTK------------------SLLSLNMSSNILTDTIFRCLPP--RIKV 425
Query: 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI-SELKRLEYLDLHSN 284
L L SN+++ +P Q+ L L L+++ NQ + VP I L L+ + LH+N
Sbjct: 426 LDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTN 478
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 35/145 (24%)
Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN 508
+LDLSHN LS + + TNL + LSHN L + L +LDL +
Sbjct: 43 LLDLSHNNLSRLRAEWTPT-----RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 509 NQIADIFPSWLGTLPELKVLML---------------------------QFNRFHGEIGE 541
N + + L L+VL+L Q +RF E+ +
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 542 PDTGFVFPKLRIIDLSHNRFSGKLP 566
G PKL ++DLS N+ KLP
Sbjct: 158 --DGNKLPKLMLLDLSSNKLK-KLP 179
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 249 LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308
LT L +L LS N + + L YLDL SN+L + E L L++L VL L
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLY 120
Query: 309 ANNLSLITRNTVNIRLQNKFVFLG 332
N++ ++ RN Q + ++L
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLS 144
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 212 NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSI 270
NQ+T P L NL ++T L L N L+ S I L + LDL+ Q P + +
Sbjct: 73 NQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 271 SELKRLEYLDLHS-NNLS-------------GNVYIEELLP--KLKSLIVLFLSANNLSL 314
S L+ L YLDL+ N+S GN + +L P L L L N +S
Sbjct: 129 SNLQVL-YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 315 IT-----RNTVNIRLQN 326
I+ N + + L+N
Sbjct: 188 ISPLASLPNLIEVHLKN 204
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 441 LCNLNSLRVLDLSHNFLSGVLPQC-LSNSKIF-------------KNATNLKMIDLSHNL 486
+ L S++ LDL+ ++ V P LSN ++ TNL+ + + +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162
Query: 487 LQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
+ P LAN + L L +N+I+DI P L +LP L + L+ N+
Sbjct: 163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 38/160 (23%)
Query: 415 PLPIPPESTIHYLVSNNLLTGKLAPWL------------CNLNSLRV---------LDLS 453
P +P ++TI +L N L T LA + C L L+V LDLS
Sbjct: 26 PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLS 85
Query: 454 HN------FLSGVLPQCLSNSKIFKNATNLKM-----------IDLSHNLLQGRIPRSLA 496
HN L LP F T+L + + L N L+ P L
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
LE L L NNQ+ ++ L L L L+LQ N +
Sbjct: 146 PTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQL 238
+LS L ++ L+G+ L LT ++ N+LT L L L L LK N+L
Sbjct: 83 DLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 239 RGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
+ P + +L L L+ NQ ++ L+ L+ L L N+L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 38/160 (23%)
Query: 415 PLPIPPESTIHYLVSNNLLTGKLAPWL------------CNLNSLRV---------LDLS 453
P +P ++TI +L N L T LA + C L L+V LDLS
Sbjct: 26 PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLS 85
Query: 454 HN------FLSGVLPQCLSNSKIFKNATNLKM-----------IDLSHNLLQGRIPRSLA 496
HN L LP F T+L + + L N L+ P L
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
LE L L NNQ+ ++ L L L L+LQ N +
Sbjct: 146 PTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQL 238
+LS L ++ L+G+ L LT ++ N+LT L L L L LK N+L
Sbjct: 83 DLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 239 RGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
+ P + +L L L+ NQ ++ L+ L+ L L N+L
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 27/158 (17%)
Query: 132 SEIMNLSSFSGQVPSLGNL---TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLA---- 184
S + N + + + SL + T LK L LS N S S + T+L L+
Sbjct: 41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-----LSPLKDLTKLEELSVNRN 95
Query: 185 -LANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLP 243
L N+N I PS L+ + D N+L + L +L L ILS+++N+L+ +
Sbjct: 96 RLKNLNGI---PSAC-----LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV- 144
Query: 244 SQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281
+G L++L LDL N+ ++ LK++ ++DL
Sbjct: 145 -MLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDL 179
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
+++ LDLS+N ++ + SNS + + NL+ + L+ N + S ++ LE LD
Sbjct: 53 AVKSLDLSNNRITYI-----SNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106
Query: 506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKL 565
L N ++++ SW L L L L N + +GE KL+I+ + + K+
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 566 PSKYF 570
K F
Sbjct: 166 QRKDF 170
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 212 NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271
NQ+T P +L L L SN+L LTQLT LDL+ N + +
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102
Query: 272 ELKRLEYLDLHSN 284
LK L ++ L++N
Sbjct: 103 NLKSLTHIYLYNN 115
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR--IPRSLANC 498
LC +++ L+H + G + + +N NL+ +DLSH+ ++ L N
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 499 TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLS 557
+ L+ L+L N+ + P+L++L L F R ++ + + F L++++LS
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL--KVKDAQSPFQNLHLLKVLNLS 433
Query: 558 H 558
H
Sbjct: 434 H 434
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 38/160 (23%)
Query: 415 PLPIPPESTIHYLVSNNLLTGKLAPWL------------CNLNSLRV---------LDLS 453
P +P ++TI +L N L T LA + C L L+V LDLS
Sbjct: 26 PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLS 85
Query: 454 HN------FLSGVLPQCLSNSKIFKNATNLKM-----------IDLSHNLLQGRIPRSLA 496
HN L LP F T+L + + L N L+ P L
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
LE L L NNQ+ ++ L L L L+LQ N +
Sbjct: 146 PTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 38/160 (23%)
Query: 415 PLPIPPESTIHYLVSNNLLTGKLAPWL------------CNLNSLRV---------LDLS 453
P +P ++TI +L N L T LA + C L L+V LDLS
Sbjct: 26 PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLS 85
Query: 454 HN------FLSGVLPQCLSNSKIFKNATNLKM-----------IDLSHNLLQGRIPRSLA 496
HN L LP F T+L + + L N L+ P L
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
LE L L NNQ+ ++ L L L L+LQ N +
Sbjct: 146 PTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
+++ LDLS+N ++ + SNS + + NL+ + L+ N + S ++ LE LD
Sbjct: 27 AVKSLDLSNNRITYI-----SNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 80
Query: 506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKL 565
L N ++++ SW L L L L N + +GE KL+I+ + + K+
Sbjct: 81 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKI 139
Query: 566 PSKYF 570
K F
Sbjct: 140 QRKDF 144
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Query: 179 ELSWLALANINLIG--EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
LS L I+ G E P L + N L +P +A+LNRL LS+++
Sbjct: 102 RLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRAC 160
Query: 237 QLRGYLPSQIGS---------LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
LP + S L L +L L + +P+SI+ L+ L+ L + ++ LS
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS 219
Query: 288 GNVYIEELLPKLKSL 302
LPKL+ L
Sbjct: 220 ALGPAIHHLPKLEEL 234
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL 257
L++L QL + N++T L+ L +L LSL+ NQ+R +P + LT+L L L
Sbjct: 128 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYL 183
Query: 258 SCNQFQGPVPSSISELKRLEYLDLHS 283
S N ++ LK L+ L+L S
Sbjct: 184 SKNHISD--LRALRGLKNLDVLELFS 207
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQL 238
EL+ L L + NL +WL+N L ++ N+L + + + RL L + +N+L
Sbjct: 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Query: 239 RGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPK 298
++ N + P+P+ L+ LDL N+L +++E P+
Sbjct: 291 ------------------VALNLYGQPIPT-------LKVLDLSHNHL---LHVERNQPQ 322
Query: 299 LKSLIVLFLSANNL 312
L L+L N++
Sbjct: 323 FDRLENLYLDHNSI 336
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 410 NKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ------ 463
N ++GP+ + E TI L NNL WL N L +DLS+N L ++
Sbjct: 224 NVVRGPVNV--ELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278
Query: 464 -----CLSNSKIF------KNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIA 512
+SN+++ + LK++DLSHN L + R+ LE L L +N I
Sbjct: 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV 337
Query: 513 DIFPSWLGTLPEL 525
+ S TL L
Sbjct: 338 TLKLSTHHTLKNL 350
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH---NLLQGRIPRSLANCTMLE 502
+++ LDLS N ++ + + NL+++ L N ++G SL + LE
Sbjct: 27 AMKSLDLSFNKITYI------GHGDLRACANLQVLILKSSRINTIEGDAFYSLGS---LE 77
Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
LDL +N ++ + SW G L LK L L N +
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
LTIL L+ N L + + + L +DLS N+ + + +++RLE L + +N L
Sbjct: 227 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 287 SG-NVYIEELLPKLKSLIVLFLSANNLSLITRNTVNI-RLQNKFV 329
N+Y + +P LK VL LS N+L + RN RL+N ++
Sbjct: 285 VALNLYGQP-IPTLK---VLDLSHNHLLHVERNQPQFDRLENLYL 325
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 198 LMNLTQLTYINFDLNQLT-----GPIP---------NWLANLN-------RLTILSLKSN 236
LM T+LT +N D +LT G +P N L +L LT+L + N
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
+L + L +L L L N+ + P ++ +LE L L +NNL+ LL
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLL 168
Query: 297 PKLKSLIVLFLSANNLSLITR 317
L++L L L N+L I +
Sbjct: 169 NGLENLDTLLLQENSLYTIPK 189
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH---NLLQGRIPRSLANCTMLE 502
+++ LDLS N ++ + + NL+++ L N ++G SL + LE
Sbjct: 53 AMKSLDLSFNKITYI------GHGDLRACANLQVLILKSSRINTIEGDAFYSLGS---LE 103
Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
LDL +N ++ + SW G L LK L L N +
Sbjct: 104 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 198 LMNLTQLTYINFDLNQLT-----GPIP---------NWLANLN-------RLTILSLKSN 236
LM T+LT +N D +LT G +P N L +L LT+L + N
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
+L + L +L L L N+ + P ++ +LE L L +NNL+ LL
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLL 168
Query: 297 PKLKSLIVLFLSANNLSLITR 317
L++L L L N+L I +
Sbjct: 169 NGLENLDTLLLQENSLYTIPK 189
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 198 LMNLTQLTYINFDLNQLT-----GPIP---------NWLANLN-------RLTILSLKSN 236
LM T+LT +N D +LT G +P N L +L LT+L + N
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
+L + L +L L L N+ + P ++ +LE L L +NNL+ LL
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLL 168
Query: 297 PKLKSLIVLFLSANNLSLITR 317
L++L L L N+L I +
Sbjct: 169 NGLENLDTLLLQENSLYTIPK 189
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 59/160 (36%), Gaps = 38/160 (23%)
Query: 415 PLPIPPESTIHYLVSNNLLTGKLAPWL------------CNLNSLRV---------LDLS 453
P +P ++TI +L N L T LA + C L L+V LDLS
Sbjct: 26 PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLS 85
Query: 454 HN------FLSGVLPQCLSNSKIFKNATNLKM-----------IDLSHNLLQGRIPRSLA 496
HN L LP F T+L + + L N L+ P L
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
LE L L NN + ++ L L L L+LQ N +
Sbjct: 146 PTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|2XER|A Chain A, Human Patl1 C-Terminal Domain (Loop Variant With Sulfates)
pdb|2XER|B Chain B, Human Patl1 C-Terminal Domain (Loop Variant With Sulfates)
pdb|2XER|C Chain C, Human Patl1 C-Terminal Domain (Loop Variant With Sulfates)
Length = 248
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 6 CFLTAFSLLLFHITNAHLASPLHQL 30
C L+ FSLLL+H+ + + S L QL
Sbjct: 124 CLLSPFSLLLYHLPSVSITSLLRQL 148
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 198 LMNLTQLTYINFDLNQLT-----GPIP---------NWLANLN-------RLTILSLKSN 236
LM T+LT +N D +LT G +P N L +L LT+L + N
Sbjct: 52 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 111
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
+L + L +L L L N+ + P ++ +LE L L +NNL+ LL
Sbjct: 112 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLL 169
Query: 297 PKLKSLIVLFLSANNLSLITR 317
L++L L L N+L I +
Sbjct: 170 NGLENLDTLLLQENSLYTIPK 190
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 198 LMNLTQLTYINFDLNQLT-----GPIP---------NWLANLN-------RLTILSLKSN 236
LM T+LT +N D +LT G +P N L +L LT+L + N
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
+L + L +L L L N+ + P ++ +LE L L +NNL+ LL
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLL 168
Query: 297 PKLKSLIVLFLSANNLSLITR 317
L++L L L N+L I +
Sbjct: 169 NGLENLDTLLLQENSLYTIPK 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,785,442
Number of Sequences: 62578
Number of extensions: 773938
Number of successful extensions: 2293
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1445
Number of HSP's gapped (non-prelim): 506
length of query: 821
length of database: 14,973,337
effective HSP length: 107
effective length of query: 714
effective length of database: 8,277,491
effective search space: 5910128574
effective search space used: 5910128574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)