Query 041782
Match_columns 821
No_of_seqs 938 out of 5984
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.7E-72 5.8E-77 688.4 50.7 584 32-747 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-56 3.8E-61 548.7 40.1 517 113-747 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-37 2.7E-42 322.0 7.2 232 439-719 215-451 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 8E-41 1.7E-45 331.3 -19.5 489 112-720 44-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 6.5E-36 1.4E-40 309.3 7.4 371 204-695 80-451 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 3.7E-39 7.9E-44 319.5 -16.3 494 89-696 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.7E-35 3.6E-40 322.6 -4.5 464 152-742 22-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.7E-35 5.9E-40 321.0 -5.1 468 109-718 17-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.1E-34 8.9E-39 297.5 -3.6 372 87-542 7-381 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.2E-32 2.6E-37 286.6 -3.5 364 202-718 7-373 (1255)
11 PLN03210 Resistant to P. syrin 99.9 4.4E-22 9.5E-27 244.6 26.3 252 242-534 580-836 (1153)
12 KOG4237 Extracellular matrix p 99.9 1.1E-25 2.4E-30 223.9 -4.3 212 440-717 269-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 8.6E-22 1.9E-26 242.0 27.6 203 87-315 532-740 (1153)
14 KOG4237 Extracellular matrix p 99.9 6.9E-24 1.5E-28 211.2 -4.0 415 151-693 67-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 5.7E-21 1.2E-25 217.3 17.3 222 400-725 242-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2E-20 4.4E-25 212.8 17.4 264 179-519 202-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.6E-19 3.4E-24 207.2 18.8 250 152-458 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.9E-19 6.4E-24 204.9 12.4 181 327-562 179-359 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 7E-19 1.5E-23 188.3 0.2 73 441-514 217-293 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.7E-23 186.4 -1.2 118 440-561 188-319 (319)
21 PLN03150 hypothetical protein; 99.6 5.8E-16 1.3E-20 177.7 11.3 117 637-753 420-538 (623)
22 KOG0617 Ras suppressor protein 99.6 2.8E-18 6E-23 151.9 -6.2 161 147-317 29-190 (264)
23 KOG0617 Ras suppressor protein 99.6 2.8E-17 6.1E-22 145.6 -4.2 165 199-371 30-194 (264)
24 PLN03150 hypothetical protein; 99.5 4.2E-14 9E-19 162.4 14.1 137 28-198 366-510 (623)
25 KOG0532 Leucine-rich repeat (L 99.1 1.9E-12 4.1E-17 136.1 -3.7 56 637-694 213-271 (722)
26 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.6E-16 126.4 1.9 161 223-413 118-284 (505)
27 KOG0532 Leucine-rich repeat (L 99.1 1.6E-12 3.4E-17 136.7 -4.9 195 444-718 74-271 (722)
28 KOG4658 Apoptotic ATPase [Sign 99.1 9.6E-11 2.1E-15 137.4 5.1 133 147-285 519-653 (889)
29 PF14580 LRR_9: Leucine-rich r 99.0 1.6E-10 3.5E-15 108.5 5.0 109 147-263 15-126 (175)
30 COG4886 Leucine-rich repeat (L 99.0 3.6E-10 7.7E-15 124.6 8.5 198 91-318 97-295 (394)
31 COG4886 Leucine-rich repeat (L 99.0 5.4E-10 1.2E-14 123.1 8.7 149 155-314 97-246 (394)
32 PF14580 LRR_9: Leucine-rich r 99.0 1.7E-10 3.7E-15 108.3 3.8 109 200-314 17-127 (175)
33 KOG3207 Beta-tubulin folding c 99.0 4.9E-11 1.1E-15 122.0 -0.3 212 297-562 118-339 (505)
34 KOG1909 Ran GTPase-activating 99.0 3.8E-11 8.3E-16 119.6 -2.3 120 441-562 88-226 (382)
35 KOG1909 Ran GTPase-activating 99.0 3.9E-11 8.4E-16 119.5 -3.0 95 87-190 30-132 (382)
36 KOG1259 Nischarin, modulator o 99.0 1.4E-10 3E-15 112.6 0.5 116 436-563 298-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.5E-09 3.4E-14 127.4 7.2 153 109-281 519-675 (889)
38 PF08263 LRRNT_2: Leucine rich 98.8 3.4E-09 7.4E-14 74.5 4.3 42 33-83 2-43 (43)
39 PF13855 LRR_8: Leucine rich r 98.8 2E-09 4.4E-14 82.9 3.1 60 660-719 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 4.9E-09 1.1E-13 80.8 3.0 60 636-695 2-61 (61)
41 KOG1259 Nischarin, modulator o 98.8 2.5E-09 5.4E-14 104.0 1.5 109 299-415 306-414 (490)
42 KOG0531 Protein phosphatase 1, 98.7 1.4E-09 3E-14 119.9 -0.7 196 150-363 71-269 (414)
43 KOG0531 Protein phosphatase 1, 98.7 3E-09 6.5E-14 117.3 -0.0 108 200-315 70-177 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.4E-09 3.1E-14 105.8 -6.3 180 203-410 186-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.5 4.2E-09 9E-14 114.2 -6.7 19 108-126 104-122 (1096)
46 KOG2982 Uncharacterized conser 98.3 1.5E-07 3.3E-12 91.9 0.4 86 200-285 69-157 (418)
47 KOG2120 SCF ubiquitin ligase, 98.3 5E-08 1.1E-12 95.3 -3.5 182 178-385 185-373 (419)
48 KOG1859 Leucine-rich repeat pr 98.2 3.5E-08 7.6E-13 107.2 -6.5 176 147-338 105-291 (1096)
49 KOG4579 Leucine-rich repeat (L 98.2 7.5E-08 1.6E-12 83.2 -3.8 81 637-720 55-136 (177)
50 KOG2982 Uncharacterized conser 98.2 4.7E-07 1E-11 88.6 1.1 62 475-536 199-262 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.1 2.7E-07 5.9E-12 89.0 -1.6 42 245-286 87-132 (388)
52 PRK15386 type III secretion pr 98.0 2E-05 4.4E-10 83.4 8.3 75 473-561 50-124 (426)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 56.8 3.1 36 660-696 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 97.8 1E-06 2.3E-11 76.3 -3.6 59 203-263 78-136 (177)
55 COG5238 RNA1 Ran GTPase-activa 97.8 1.4E-05 3E-10 77.5 3.0 93 147-239 26-133 (388)
56 PF12799 LRR_4: Leucine Rich r 97.7 5.5E-05 1.2E-09 53.2 3.8 36 203-239 2-37 (44)
57 KOG4341 F-box protein containi 97.6 2.1E-06 4.6E-11 88.2 -5.3 38 498-535 400-438 (483)
58 PRK15386 type III secretion pr 97.6 0.0002 4.3E-09 76.1 9.0 32 475-509 156-187 (426)
59 KOG3665 ZYG-1-like serine/thre 97.6 1.7E-05 3.8E-10 91.3 0.3 134 151-288 122-264 (699)
60 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.8E-09 68.1 5.2 83 228-313 44-126 (233)
61 KOG4341 F-box protein containi 97.5 5.8E-06 1.3E-10 85.1 -4.6 261 147-411 160-437 (483)
62 KOG3665 ZYG-1-like serine/thre 97.4 6.6E-05 1.4E-09 86.6 1.7 138 113-266 122-266 (699)
63 KOG1644 U2-associated snRNP A' 97.3 0.00038 8.3E-09 65.0 5.6 84 327-413 43-126 (233)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00047 1E-08 67.4 2.5 82 200-281 63-150 (260)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00059 1.3E-08 66.7 1.8 67 247-314 62-130 (260)
66 PF13306 LRR_5: Leucine rich r 96.7 0.0029 6.3E-08 57.1 6.0 105 147-259 8-112 (129)
67 PF13306 LRR_5: Leucine rich r 96.5 0.0085 1.9E-07 54.0 7.4 123 439-576 6-128 (129)
68 KOG2123 Uncharacterized conser 96.5 0.00012 2.5E-09 71.6 -5.2 85 444-538 18-103 (388)
69 KOG2123 Uncharacterized conser 96.4 0.00021 4.6E-09 69.8 -3.7 87 225-316 18-104 (388)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0046 9.9E-08 36.1 0.7 11 662-672 3-13 (22)
71 KOG1947 Leucine rich repeat pr 95.3 0.0026 5.7E-08 72.2 -1.9 16 345-360 358-373 (482)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0066 1.4E-07 35.4 0.6 21 684-705 1-21 (22)
73 KOG1947 Leucine rich repeat pr 95.0 0.0028 6E-08 72.0 -3.0 110 201-311 187-306 (482)
74 KOG4308 LRR-containing protein 94.0 0.00063 1.4E-08 75.2 -10.7 61 637-697 235-304 (478)
75 KOG4308 LRR-containing protein 93.1 0.00075 1.6E-08 74.7 -12.0 40 152-191 88-128 (478)
76 PF13504 LRR_7: Leucine rich r 90.9 0.13 2.8E-06 27.7 1.1 11 661-671 3-13 (17)
77 KOG0473 Leucine-rich repeat pr 89.6 0.016 3.4E-07 55.6 -5.3 82 636-720 43-124 (326)
78 KOG0473 Leucine-rich repeat pr 88.4 0.013 2.9E-07 56.1 -6.8 87 198-287 38-124 (326)
79 smart00370 LRR Leucine-rich re 87.7 0.53 1.1E-05 28.5 2.3 14 659-672 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 87.7 0.53 1.1E-05 28.5 2.3 14 659-672 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 87.1 0.4 8.7E-06 29.1 1.5 17 682-698 1-17 (26)
82 smart00370 LRR Leucine-rich re 87.1 0.4 8.7E-06 29.1 1.5 17 682-698 1-17 (26)
83 PF13516 LRR_6: Leucine Rich r 86.0 0.31 6.7E-06 29.0 0.5 18 659-676 2-19 (24)
84 KOG3864 Uncharacterized conser 84.9 0.29 6.2E-06 46.4 0.1 86 501-586 103-188 (221)
85 KOG3864 Uncharacterized conser 84.4 0.2 4.3E-06 47.5 -1.2 80 447-532 103-185 (221)
86 KOG4242 Predicted myosin-I-bin 81.7 5.8 0.00013 42.8 8.0 63 152-214 215-280 (553)
87 KOG4242 Predicted myosin-I-bin 78.8 8.4 0.00018 41.6 8.1 18 375-392 354-371 (553)
88 smart00365 LRR_SD22 Leucine-ri 68.6 3.9 8.5E-05 24.9 1.6 14 683-696 2-15 (26)
89 smart00364 LRR_BAC Leucine-ric 65.4 3.7 7.9E-05 24.9 1.1 13 660-672 3-15 (26)
90 smart00368 LRR_RI Leucine rich 56.9 8.7 0.00019 23.8 1.7 14 659-672 2-15 (28)
91 PF13260 DUF4051: Protein of u 52.0 10 0.00022 26.3 1.5 42 1-47 1-44 (54)
92 TIGR00864 PCC polycystin catio 40.2 16 0.00035 48.6 2.0 33 665-697 1-33 (2740)
93 KOG3763 mRNA export factor TAP 39.1 14 0.00031 40.9 1.1 14 350-363 271-284 (585)
94 PF03302 VSP: Giardia variant- 31.8 28 0.00061 38.0 2.0 23 775-797 369-391 (397)
95 KOG3763 mRNA export factor TAP 27.3 41 0.00089 37.5 2.2 14 401-414 271-284 (585)
96 smart00367 LRR_CC Leucine-rich 26.4 49 0.0011 19.8 1.6 12 499-510 2-13 (26)
97 PF04478 Mid2: Mid2 like cell 25.8 72 0.0016 29.1 3.1 8 801-808 101-108 (154)
98 PTZ00382 Variant-specific surf 25.5 43 0.00094 28.1 1.6 18 777-794 70-87 (96)
99 PF06040 Adeno_E3: Adenovirus 25.3 73 0.0016 27.1 2.8 34 782-815 92-126 (127)
100 PF07172 GRP: Glycine rich pro 23.4 71 0.0015 26.8 2.5 17 1-17 1-18 (95)
101 TIGR00864 PCC polycystin catio 22.8 52 0.0011 44.2 2.3 32 641-672 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-72 Score=688.42 Aligned_cols=584 Identities=34% Similarity=0.526 Sum_probs=492.0
Q ss_pred CHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccccceeeCCCCCCEEEEEcCCCCCcccccCCccccc
Q 041782 32 HAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFH 111 (821)
Q Consensus 32 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~ 111 (821)
.++|++||++||+++.++.. .+.+|+. ..+||.|.||+|+. .++|+.|+|+++++.|.++. ++..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~---------~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~ 91 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK---------YLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFR 91 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc---------cCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhC
Confidence 45799999999999975443 6789976 67899999999985 47999999999999998876 8999
Q ss_pred CCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcccc
Q 041782 112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLI 191 (821)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 191 (821)
+++|++|+|++|.+.+ .+|..+ +..+++|++|+|++|.+++.+| . +.+++|++|++++|.+.
T Consensus 92 l~~L~~L~Ls~n~~~~-~ip~~~------------~~~l~~L~~L~Ls~n~l~~~~p---~--~~l~~L~~L~Ls~n~~~ 153 (968)
T PLN00113 92 LPYIQTINLSNNQLSG-PIPDDI------------FTTSSSLRYLNLSNNNFTGSIP---R--GSIPNLETLDLSNNMLS 153 (968)
T ss_pred CCCCCEEECCCCccCC-cCChHH------------hccCCCCCEEECcCCccccccC---c--cccCCCCEEECcCCccc
Confidence 9999999999999874 477663 5589999999999999999887 2 56899999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782 192 GEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271 (821)
Q Consensus 192 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 271 (821)
+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC-chhhhhhcCCCc
Q 041782 272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL-KEFLDFLNDQDQ 350 (821)
Q Consensus 272 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~l~~l~~ 350 (821)
++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..+..+ ..+++|+.|++++|.+ +.+|..+..+++
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred cCCCCCEEECcCceeccccCh--hHhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 999999999999999876654 58899999999999998876444332 1344555555555555 344555555555
Q ss_pred cceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccC
Q 041782 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSN 430 (821)
Q Consensus 351 L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~ 430 (821)
|+.|++++|.+.+..|..+..+ ++|+.|++++|.+++..+. .+..++ +++.+++++
T Consensus 310 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~-~l~~~~---------------------~L~~L~Ls~ 365 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVALTSL--PRLQVLQLWSNKFSGEIPK-NLGKHN---------------------NLTVLDLST 365 (968)
T ss_pred CcEEECCCCccCCcCChhHhcC--CCCCEEECcCCCCcCcCCh-HHhCCC---------------------CCcEEECCC
Confidence 5555555555555555554444 4455555555554443332 223334 445555555
Q ss_pred CccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCc
Q 041782 431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ 510 (821)
Q Consensus 431 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 510 (821)
|.+.+.+|..++.+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|+
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG------ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh------CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 555667788888899999999999999999887654 47899999999999999999999999999999999999
Q ss_pred CCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccC
Q 041782 511 IADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQ 590 (821)
Q Consensus 511 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~ 590 (821)
+++.+|..+..+++|+.|++++|++.+.+|... ..++|+.|++++|++++.+|.. +..
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~-~~~------------------ 497 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRK-LGS------------------ 497 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChh-hhh------------------
Confidence 999999988999999999999999998888754 3589999999999999888754 221
Q ss_pred CCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcc
Q 041782 591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNN 670 (821)
Q Consensus 591 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 670 (821)
++.|+.|+|++|++.+.+|..++++++|++|+|++|.
T Consensus 498 -------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 498 -------------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred -------------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 2348889999999999999999999999999999999
Q ss_pred cCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCCCC
Q 041782 671 LLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKP 747 (821)
Q Consensus 671 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~ 747 (821)
+++.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..++|.++...++.||+.+||.+
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-56 Score=548.69 Aligned_cols=517 Identities=31% Similarity=0.462 Sum_probs=425.5
Q ss_pred CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhc-cCCCCCCEEecCCcccc
Q 041782 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWI-AKQTELSWLALANINLI 191 (821)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~l~~L~~L~L~~n~~~ 191 (821)
.+++.|||++|.+.+. +|.. +..+++|++|+|++|++++.+| ..+ ..+++|++|++++|++.
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~-------------~~~l~~L~~L~Ls~n~~~~~ip---~~~~~~l~~L~~L~Ls~n~l~ 131 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSA-------------IFRLPYIQTINLSNNQLSGPIP---DDIFTTSSSLRYLNLSNNNFT 131 (968)
T ss_pred CcEEEEEecCCCcccc-CChH-------------HhCCCCCCEEECCCCccCCcCC---hHHhccCCCCCEEECcCCccc
Confidence 4789999999988753 4554 7889999999999999998888 444 48999999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782 192 GEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271 (821)
Q Consensus 192 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 271 (821)
+.+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++
T Consensus 132 ~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 132 GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 98885 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC-chhhhhhcCCCc
Q 041782 272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL-KEFLDFLNDQDQ 350 (821)
Q Consensus 272 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~l~~l~~ 350 (821)
++++|++|++++|.+.+.+|. .+.++++|++|++++|.+++..+..+ ..+++|+.|++++|.+ +.+|..+..+++
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred CcCCccEEECcCCccCCcCCh--hHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 999999999999999876664 48899999999999998876544332 2345555555555555 345555555555
Q ss_pred cceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccC
Q 041782 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSN 430 (821)
Q Consensus 351 L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~ 430 (821)
|++|++++|.+.+.+|..+..+ ++|+.|++++|.+++..+. .+..+++| +.+++++
T Consensus 286 L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~l~~n~~~~~~~~-~~~~l~~L---------------------~~L~L~~ 341 (968)
T PLN00113 286 LISLDLSDNSLSGEIPELVIQL--QNLEILHLFSNNFTGKIPV-ALTSLPRL---------------------QVLQLWS 341 (968)
T ss_pred cCEEECcCCeeccCCChhHcCC--CCCcEEECCCCccCCcCCh-hHhcCCCC---------------------CEEECcC
Confidence 5555555555555555555544 4555555555555544433 22334444 4444555
Q ss_pred CccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCc
Q 041782 431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ 510 (821)
Q Consensus 431 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 510 (821)
|.+.+.+|..++.+++|+.|++++|++.+.+|..+. .+++|+.|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus 342 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred CCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 555567788889999999999999999999887654 36889999999999999999999999999999999999
Q ss_pred CCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccC
Q 041782 511 IADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQ 590 (821)
Q Consensus 511 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~ 590 (821)
+++..|..+..+++|+.|++++|.+.+.++... ..+++|+.|++++|++.+.+|... .
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~------------------- 473 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G------------------- 473 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c-------------------
Confidence 999999999999999999999999998887765 568999999999999988777421 0
Q ss_pred CCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcc
Q 041782 591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNN 670 (821)
Q Consensus 591 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 670 (821)
...|+.||+++|++++.+|..+.++++|++|+|++|+
T Consensus 474 -------------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 474 -------------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510 (968)
T ss_pred -------------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence 1238899999999999999999999999999999999
Q ss_pred cCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC-CCCCCCCCCccCCCCCCCCCC
Q 041782 671 LLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG-KQFNTFENSSFEGNPGLCGKP 747 (821)
Q Consensus 671 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc~~~ 747 (821)
+++.+|+.++++++|++|+|++|++++.+|..|..+++|++|++++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus 511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999975 234556667777887655433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-37 Score=321.96 Aligned_cols=232 Identities=23% Similarity=0.279 Sum_probs=150.1
Q ss_pred hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW 518 (821)
Q Consensus 439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 518 (821)
..|.++++|+.|+|..|+|.-. ..-.|.++++|+.|.+..|++...-...|-.|.++++|+|+.|++...-..|
T Consensus 215 r~Fk~L~~L~~LdLnrN~iriv------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIV------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred HHhhhcchhhhhhccccceeee------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 4566678888888888877633 2335777888888888888887666677888888888888888888777778
Q ss_pred hCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccch--hcccCCCCCcc
Q 041782 519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLK--YMQDQPGQSLN 596 (821)
Q Consensus 519 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~--~~~~~~~~~l~ 596 (821)
+.++++|+.|+|++|.|...-++.. ..+++|++|||++|+++ .++++.|.++..|+.+.++.+. ++..
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e------- 358 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAE------- 358 (873)
T ss_pred ccccchhhhhccchhhhheeecchh--hhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHh-------
Confidence 8888888888888888875544443 55788888888888887 6777767766665555444221 1110
Q ss_pred cccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccc---ccccCCCCCEEeCCCcccCc
Q 041782 597 YILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPT---SISELKGLNCLNLSGNNLLG 673 (821)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~---~l~~L~~L~~L~Ls~N~l~~ 673 (821)
.-..-+++|++|||++|.++..|-+ .|.+|++|+.|+|.+|++..
T Consensus 359 --------------------------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 359 --------------------------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred --------------------------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 0000133455666666666544433 25556666666666666664
Q ss_pred chhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcc
Q 041782 674 HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL 719 (821)
Q Consensus 674 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 719 (821)
..-..|.++..||.|||.+|.|..+.|..|..+ .|+.|-+..-.+
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 444456666666666666666666666666665 555555544333
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8e-41 Score=331.27 Aligned_cols=489 Identities=25% Similarity=0.303 Sum_probs=333.3
Q ss_pred CCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcccc
Q 041782 112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLI 191 (821)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~ 191 (821)
-..|+.|++++|.+.. +-+. +.++..|.+|++++|+++..+ ..++.+..++.++.++|++.
T Consensus 44 qv~l~~lils~N~l~~--l~~d-------------l~nL~~l~vl~~~~n~l~~lp----~aig~l~~l~~l~vs~n~ls 104 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV--LRED-------------LKNLACLTVLNVHDNKLSQLP----AAIGELEALKSLNVSHNKLS 104 (565)
T ss_pred hcchhhhhhccCchhh--ccHh-------------hhcccceeEEEeccchhhhCC----HHHHHHHHHHHhhcccchHh
Confidence 3456777777776642 3333 667777888888888777654 45677777777888887774
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782 192 GEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271 (821)
Q Consensus 192 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 271 (821)
++|..++.+.+|+.|++++|.+. .+|++++.+..|+.++..+|+++ ..|.++.++.+|..|++.+|++....|. .-
T Consensus 105 -~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i 180 (565)
T KOG0472|consen 105 -ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HI 180 (565)
T ss_pred -hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HH
Confidence 67777778888888888888777 66777777778888888888877 5677777788888888888887744443 33
Q ss_pred CCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhc-CCCc
Q 041782 272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLN-DQDQ 350 (821)
Q Consensus 272 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~-~l~~ 350 (821)
+++.|++||...|-+. .+|. .++.+.+|+-|++..|.+...+.. ..+..|++++++.|.+..+|+... ++++
T Consensus 181 ~m~~L~~ld~~~N~L~-tlP~--~lg~l~~L~~LyL~~Nki~~lPef----~gcs~L~Elh~g~N~i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLE-TLPP--ELGGLESLELLYLRRNKIRFLPEF----PGCSLLKELHVGENQIEMLPAEHLKHLNS 253 (565)
T ss_pred HHHHHHhcccchhhhh-cCCh--hhcchhhhHHHHhhhcccccCCCC----CccHHHHHHHhcccHHHhhHHHHhccccc
Confidence 4778888888777765 3443 377788888888888887776632 246777788888888877776654 7778
Q ss_pred cceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccC
Q 041782 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSN 430 (821)
Q Consensus 351 L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~ 430 (821)
+.+||+.+|++. +.|+.+.-+ .+|.+||+++|.+++.++. .+.+ .|+.|.+.+|.+...-.. +
T Consensus 254 l~vLDLRdNklk-e~Pde~clL--rsL~rLDlSNN~is~Lp~s--Lgnl-hL~~L~leGNPlrTiRr~---------i-- 316 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEICLL--RSLERLDLSNNDISSLPYS--LGNL-HLKFLALEGNPLRTIRRE---------I-- 316 (565)
T ss_pred ceeeeccccccc-cCchHHHHh--hhhhhhcccCCccccCCcc--cccc-eeeehhhcCCchHHHHHH---------H--
Confidence 888888888876 667777666 6778888888888777764 5555 677777777765421000 0
Q ss_pred CccCCCCchhhhCCCC-CcEEEcCCC---c-CcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCC---CC
Q 041782 431 NLLTGKLAPWLCNLNS-LRVLDLSHN---F-LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM---LE 502 (821)
Q Consensus 431 n~~~~~~~~~l~~l~~-L~~L~Ls~n---~-l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~ 502 (821)
+.+.-...+..+.+ .+.=-++.- . -.+..|.+ .........+.+.|++++-+++ .+|........ .+
T Consensus 317 --i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~--~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt 391 (565)
T KOG0472|consen 317 --ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE--SFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVT 391 (565)
T ss_pred --HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC--cccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceE
Confidence 00000000000000 000000000 0 00001111 0111233557788888888887 56654433333 77
Q ss_pred EEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccc
Q 041782 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKS 582 (821)
Q Consensus 503 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~ 582 (821)
..+++.|++... |..+..+..+.+.-+..|+..+.+|... +.+++|..|+|++|.+. .+|.+.+.
T Consensus 392 ~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~isfv~~~l--~~l~kLt~L~L~NN~Ln-~LP~e~~~----------- 456 (565)
T KOG0472|consen 392 SVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKISFVPLEL--SQLQKLTFLDLSNNLLN-DLPEEMGS----------- 456 (565)
T ss_pred EEecccchHhhh-hhhhHHHHHHHHHHHhhcCccccchHHH--Hhhhcceeeecccchhh-hcchhhhh-----------
Confidence 889999998765 6666666665554444444444666655 67899999999998885 77765321
Q ss_pred cchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCC
Q 041782 583 QLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLN 662 (821)
Q Consensus 583 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 662 (821)
+..|+.||+|.|+|. .+|..+..+..++
T Consensus 457 ---------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 457 ---------------------------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLE 484 (565)
T ss_pred ---------------------------------------------------hhhhheecccccccc-cchHHHhhHHHHH
Confidence 122888999999988 8899888888888
Q ss_pred EEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCccc
Q 041782 663 CLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720 (821)
Q Consensus 663 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 720 (821)
.+-.++|++....|+.++++.+|.+|||.+|.+. .+|..++++++|++|++.+|+|.
T Consensus 485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888889999777777999999999999999998 78889999999999999999998
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-36 Score=309.30 Aligned_cols=371 Identities=22% Similarity=0.232 Sum_probs=267.3
Q ss_pred CCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeecccc
Q 041782 204 LTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283 (821)
Q Consensus 204 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 283 (821)
-+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 346777777777777777777777777777777777 5666555556677777777777766666777777777777777
Q ss_pred CCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhh-hcCCCccceEecccCCCC
Q 041782 284 NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDF-LNDQDQLELLDLSANKIP 362 (821)
Q Consensus 284 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 362 (821)
|.++ .++. ..|..-.++++|+|++|.|+.+....|. .+.+|..|.|+.|++..+|.. |..+++|+.|+|..|+|.
T Consensus 159 N~is-~i~~-~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 159 NLIS-EIPK-PSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred chhh-cccC-CCCCCCCCceEEeecccccccccccccc--ccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 7776 3444 3366667777777777777776665543 233555555555555555432 334666666666666554
Q ss_pred CCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhh
Q 041782 363 GKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLC 442 (821)
Q Consensus 363 ~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~ 442 (821)
-.--.. +..+++|+.|.+..|++. ..-...|.
T Consensus 235 ive~lt---------------------------FqgL~Sl~nlklqrN~I~---------------------kL~DG~Fy 266 (873)
T KOG4194|consen 235 IVEGLT---------------------------FQGLPSLQNLKLQRNDIS---------------------KLDDGAFY 266 (873)
T ss_pred eehhhh---------------------------hcCchhhhhhhhhhcCcc---------------------cccCccee
Confidence 221222 233344444444444433 12224567
Q ss_pred CCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCC
Q 041782 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522 (821)
Q Consensus 443 ~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 522 (821)
.+.++++|+|+.|++...-..+ +-+++.|+.|++++|.|...-++++..+++|++|+|++|+|+...++.|..+
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~------lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGW------LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred eecccceeecccchhhhhhccc------ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence 7899999999999998774444 3458999999999999998888899999999999999999999999999999
Q ss_pred CCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCc
Q 041782 523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS 602 (821)
Q Consensus 523 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 602 (821)
..|++|+|++|++...-...+ ..+++|+.|||++|.+++.|.... .-
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af--~~lssL~~LdLr~N~ls~~IEDaa-~~------------------------------ 387 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAF--VGLSSLHKLDLRSNELSWCIEDAA-VA------------------------------ 387 (873)
T ss_pred HHhhhhcccccchHHHHhhHH--HHhhhhhhhcCcCCeEEEEEecch-hh------------------------------
Confidence 999999999999874333333 458999999999999987665421 00
Q ss_pred cccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCc
Q 041782 603 SAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL 682 (821)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l 682 (821)
|.+ ++.|+.|+|.+|++....-..|.++.+|++|||.+|.|...-|+.|..+
T Consensus 388 ---------------------------f~g-l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 388 ---------------------------FNG-LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ---------------------------hcc-chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 011 4568999999999996666789999999999999999999999999999
Q ss_pred cCCCeEeCCCCcc
Q 041782 683 TVLESLDLSNNNL 695 (821)
Q Consensus 683 ~~L~~L~Ls~N~l 695 (821)
.|+.|.++.-.+
T Consensus 440 -~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 440 -ELKELVMNSSSF 451 (873)
T ss_pred -hhhhhhhcccce
Confidence 899988765443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.7e-39 Score=319.54 Aligned_cols=494 Identities=26% Similarity=0.342 Sum_probs=378.3
Q ss_pred EEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCC
Q 041782 89 VIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHS 168 (821)
Q Consensus 89 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~ 168 (821)
...+.++++.+.-..+ .+.++..|.+|++++|++. ++|+. ++.+..++.|+.++|+++.. |
T Consensus 47 l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~--~lp~a-------------ig~l~~l~~l~vs~n~ls~l-p 107 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLS--QLPAA-------------IGELEALKSLNVSHNKLSEL-P 107 (565)
T ss_pred hhhhhhccCchhhccH---hhhcccceeEEEeccchhh--hCCHH-------------HHHHHHHHHhhcccchHhhc-c
Confidence 4567888887764332 7889999999999999985 57777 78889999999999999865 4
Q ss_pred CCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCC
Q 041782 169 ASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGS 248 (821)
Q Consensus 169 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 248 (821)
..+..+.+|+.++.++|.+. ++|++++.+..|+.++..+|+++ ..|+.+.++.+|..|++.+|+++...| ..-+
T Consensus 108 ---~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~ 181 (565)
T KOG0472|consen 108 ---EQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIA 181 (565)
T ss_pred ---HHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHH
Confidence 67889999999999999985 67888999999999999999999 788999999999999999999995544 4445
Q ss_pred CCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCe
Q 041782 249 LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKF 328 (821)
Q Consensus 249 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 328 (821)
++.|++||...|.++ .+|+.++.+.+|+.|++..|++. ..|. |+.+..|++++++.|.+..++.... ..++++
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe---f~gcs~L~Elh~g~N~i~~lpae~~--~~L~~l 254 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE---FPGCSLLKELHVGENQIEMLPAEHL--KHLNSL 254 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC---CCccHHHHHHHhcccHHHhhHHHHh--cccccc
Confidence 999999999999888 78999999999999999999997 3443 8999999999999999998876654 368899
Q ss_pred eEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccc-cCCccEEEe
Q 041782 329 VFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL-WTDLVTLDL 407 (821)
Q Consensus 329 ~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~L~~L~L 407 (821)
..|++.+|+++++|+.+..+++|++||+++|.++ .+|..++++ .|+.|-+.+|.+..+..+..... -.-|++|.=
T Consensus 255 ~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 255 LVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred eeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 9999999999999999999999999999999998 567778886 69999999999875543211000 001222210
Q ss_pred ccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccc
Q 041782 408 RSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487 (821)
Q Consensus 408 ~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l 487 (821)
.+...-+.....-+ .+.-............+.+.+.|++++-+++. +|+..... ..-.-....+++.|++
T Consensus 331 ---~~~~dglS~se~~~---e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea---~~~~~Vt~VnfskNqL 400 (565)
T KOG0472|consen 331 ---KIKDDGLSQSEGGT---ETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEA---AKSEIVTSVNFSKNQL 400 (565)
T ss_pred ---hhccCCCCCCcccc---cccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHH---hhhcceEEEecccchH
Confidence 11100000000000 00000000111223445678899999988884 45433221 1122377899999999
Q ss_pred cccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCCh
Q 041782 488 QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPS 567 (821)
Q Consensus 488 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~ 567 (821)
. ++|..+..+..+.+.-+..|+..+.+|..+..+++|..|+|++|.+. .+|..+ +.+..|+.||+++|+|. .+|.
T Consensus 401 ~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~--~~lv~Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 401 C-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM--GSLVRLQTLNLSFNRFR-MLPE 475 (565)
T ss_pred h-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh--hhhhhhheecccccccc-cchH
Confidence 8 78888887777766555555555667889999999999999999876 677766 66888999999999986 6664
Q ss_pred hhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccc
Q 041782 568 KYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKL 647 (821)
Q Consensus 568 ~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 647 (821)
-+. . +..++.+-.++|++
T Consensus 476 ~~y-~-------------------------------------------------------------lq~lEtllas~nqi 493 (565)
T KOG0472|consen 476 CLY-E-------------------------------------------------------------LQTLETLLASNNQI 493 (565)
T ss_pred HHh-h-------------------------------------------------------------HHHHHHHHhccccc
Confidence 321 0 11245555677888
Q ss_pred cCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccc
Q 041782 648 IGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696 (821)
Q Consensus 648 ~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 696 (821)
....|..+.++.+|..|||.+|.+. .||..++++++|++|+|++|.+.
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8666666999999999999999998 88889999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-35 Score=322.65 Aligned_cols=464 Identities=28% Similarity=0.346 Sum_probs=255.3
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
.++.|+++.|.+-..+- ......-+|+.|++++|.+ +.+|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|
T Consensus 22 ~~~~ln~~~N~~l~~pl---~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPL---EFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHHhhhccccccccCch---HHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhh
Confidence 35666666665543321 3333444466666666665 355666666777777777777766 556666677777777
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 311 (821)
.|.+|.+. .+|..+..+++|++|++++|++. .+|..+..++.++.+..++|.... .++... ++.+++..|.
T Consensus 97 nL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~------~lg~~~-ik~~~l~~n~ 167 (1081)
T KOG0618|consen 97 NLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ------RLGQTS-IKKLDLRLNV 167 (1081)
T ss_pred eeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh------hhcccc-chhhhhhhhh
Confidence 77777666 56777777777777777777766 566666677777777777662111 122222 4455555444
Q ss_pred cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782 312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD 391 (821)
Q Consensus 312 l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~ 391 (821)
+.+.... .+..+.. .|||++|.+.. ..+.++ .+|+.+....|++..+.
T Consensus 168 l~~~~~~-------------------------~i~~l~~--~ldLr~N~~~~---~dls~~--~~l~~l~c~rn~ls~l~ 215 (1081)
T KOG0618|consen 168 LGGSFLI-------------------------DIYNLTH--QLDLRYNEMEV---LDLSNL--ANLEVLHCERNQLSELE 215 (1081)
T ss_pred cccchhc-------------------------chhhhhe--eeecccchhhh---hhhhhc--cchhhhhhhhcccceEE
Confidence 4332211 1111111 24444444330 111222 34444444444444332
Q ss_pred CCccccccCCccEEEeccCcccCcCCCC-CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCccc
Q 041782 392 RGSVVLLWTDLVTLDLRSNKLQGPLPIP-PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI 470 (821)
Q Consensus 392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~ 470 (821)
. ..++++.|+.++|.++...+.+ +..++.++++.|++++ +|+|++.+.+|+.++..+|+++ .+|..+.
T Consensus 216 ~-----~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~---- 284 (1081)
T KOG0618|consen 216 I-----SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRIS---- 284 (1081)
T ss_pred e-----cCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHh----
Confidence 1 1244555555555555333333 4455555566665553 5588888888888888888885 4444332
Q ss_pred ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCC-CCEEEccCCcCcccCCCCCccCCCC
Q 041782 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE-LKVLMLQFNRFHGEIGEPDTGFVFP 549 (821)
Q Consensus 471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~ 549 (821)
..++|+.|.+..|.+. -+|.....+++|++|+|..|++....+..+..... |..|+.+.|++... | .......+
T Consensus 285 --~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l-p-~~~e~~~~ 359 (1081)
T KOG0618|consen 285 --RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL-P-SYEENNHA 359 (1081)
T ss_pred --hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc-c-cccchhhH
Confidence 2577888888888887 56666777888888888888887765544444333 66666666666522 2 12223455
Q ss_pred CCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeee
Q 041782 550 KLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMN 629 (821)
Q Consensus 550 ~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (821)
.|+.|.+.+|.++..+-+- +.+
T Consensus 360 ~Lq~LylanN~Ltd~c~p~-l~~--------------------------------------------------------- 381 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPV-LVN--------------------------------------------------------- 381 (1081)
T ss_pred HHHHHHHhcCcccccchhh-hcc---------------------------------------------------------
Confidence 6666667776666432111 111
Q ss_pred cccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCc
Q 041782 630 YGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSL 709 (821)
Q Consensus 630 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 709 (821)
...|+.|+|++|++.......+.++..|++|+||+|+++ .+|.++.++..|++|...+|++. ..| .+..+++|
T Consensus 382 ----~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 382 ----FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred ----ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 122555555555555222233555555555555555555 45555555555555555555555 334 45555555
Q ss_pred cEEEcccCcccc-cCCCCCCCCCCCCCccCCCCC
Q 041782 710 AVFDVSDNNLTG-QIPQGKQFNTFENSSFEGNPG 742 (821)
Q Consensus 710 ~~L~ls~N~l~g-~iP~~~~~~~~~~~~~~gn~~ 742 (821)
+.+|+|.|+|+- .+|......++....+.||.+
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 555555555543 222222223444455555553
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-35 Score=321.02 Aligned_cols=468 Identities=27% Similarity=0.344 Sum_probs=257.5
Q ss_pred cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI 188 (821)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n 188 (821)
+..-..++.|+++.|.+-. .|-++ +.+.-+|+.||+++|.++. .| ..+..+.+|+.|+++.|
T Consensus 17 i~~~~~~~~ln~~~N~~l~--~pl~~------------~~~~v~L~~l~lsnn~~~~-fp---~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 17 ILNNEALQILNLRRNSLLS--RPLEF------------VEKRVKLKSLDLSNNQISS-FP---IQITLLSHLRQLNLSRN 78 (1081)
T ss_pred hccHHHHHhhhcccccccc--CchHH------------hhheeeeEEeecccccccc-CC---chhhhHHHHhhcccchh
Confidence 3333446667777765532 22221 3444557777777776653 33 44566677777777776
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc
Q 041782 189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS 268 (821)
Q Consensus 189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 268 (821)
.+ ...|.+.+++.+|++|.|.+|.+. ..|.++..+++|++|+++.|.+. .+|..+..++.++.+..++|.....
T Consensus 79 ~i-~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~--- 152 (1081)
T KOG0618|consen 79 YI-RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR--- 152 (1081)
T ss_pred hH-hhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh---
Confidence 66 355666777777777777777776 66777777777777777777776 5676777777777777777722212
Q ss_pred cccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCC
Q 041782 269 SISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ 348 (821)
Q Consensus 269 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l 348 (821)
++... ++.+++..|.+.+.+.. + ...++. .|+|.+|.+.... +..+++|+.+....|++..+- -.-
T Consensus 153 -lg~~~-ik~~~l~~n~l~~~~~~-~-i~~l~~--~ldLr~N~~~~~d-----ls~~~~l~~l~c~rn~ls~l~---~~g 218 (1081)
T KOG0618|consen 153 -LGQTS-IKKLDLRLNVLGGSFLI-D-IYNLTH--QLDLRYNEMEVLD-----LSNLANLEVLHCERNQLSELE---ISG 218 (1081)
T ss_pred -hcccc-chhhhhhhhhcccchhc-c-hhhhhe--eeecccchhhhhh-----hhhccchhhhhhhhcccceEE---ecC
Confidence 22222 66666666666654443 1 333333 4677776665211 123455555555555543331 123
Q ss_pred CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782 349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV 428 (821)
Q Consensus 349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l 428 (821)
++|+.|+.++|.++...+.... .+|++++++.|++++.+ .+...+.+|+.++..+|.++
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p----~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~l~--------------- 277 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVP----LNLQYLDISHNNLSNLP--EWIGACANLEALNANHNRLV--------------- 277 (1081)
T ss_pred cchheeeeccCcceeecccccc----ccceeeecchhhhhcch--HHHHhcccceEecccchhHH---------------
Confidence 5666777777766533222111 46777777777777666 25666677777777777664
Q ss_pred cCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchh-hcCCC-CCCEEeC
Q 041782 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS-LANCT-MLEFLDL 506 (821)
Q Consensus 429 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~-~L~~L~L 506 (821)
.+|..+....+|+.|++.+|.+.-. |+.. .+.++|++|+|..|++. .+|.. +.-.. +|..|..
T Consensus 278 -------~lp~ri~~~~~L~~l~~~~nel~yi-p~~l------e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 278 -------ALPLRISRITSLVSLSAAYNELEYI-PPFL------EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred -------hhHHHHhhhhhHHHHHhhhhhhhhC-CCcc------cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhh
Confidence 3444455555566666666655532 2221 22455666666666665 33332 22222 2555555
Q ss_pred CCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchh
Q 041782 507 GNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKY 586 (821)
Q Consensus 507 ~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~ 586 (821)
+.|++.......=..++.|+.|++.+|.++...-..+ ..+++|+.|+|++|++. ++|...+..|..
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~-~fpas~~~kle~----------- 408 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLN-SFPASKLRKLEE----------- 408 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeeecccccc-cCCHHHHhchHH-----------
Confidence 5555554421111134556666666666654433333 34566666666666664 566554433322
Q ss_pred cccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeC
Q 041782 587 MQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNL 666 (821)
Q Consensus 587 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 666 (821)
|+.|+||+|+++ .+|..+.++..|++|..
T Consensus 409 --------------------------------------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 409 --------------------------------------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred --------------------------------------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 444555555555 45555555555555555
Q ss_pred CCcccCcchhhhhcCccCCCeEeCCCCcccccC-CCCccccCCccEEEcccCc
Q 041782 667 SGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEI-PRQLAELTSLAVFDVSDNN 718 (821)
Q Consensus 667 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~ 718 (821)
.+|++. ..| .+.++++|+.+|+|.|+|+... |.... -++|++||+++|.
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 555555 444 4555555555555555554332 21111 1455555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.1e-34 Score=297.47 Aligned_cols=372 Identities=29% Similarity=0.430 Sum_probs=303.3
Q ss_pred CCEEEEEcCCCCCcc-cccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCC
Q 041782 87 GHVIKLNLTSSCIYG-SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSS 165 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g-~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~ 165 (821)
.-|+.+|++++.++| .+|. ....+++++.|.|....+. .+|++ ++.+.+|++|.+++|++..
T Consensus 7 pFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~--~vPeE-------------L~~lqkLEHLs~~HN~L~~ 69 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLE--QVPEE-------------LSRLQKLEHLSMAHNQLIS 69 (1255)
T ss_pred ceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhhh--hChHH-------------HHHHhhhhhhhhhhhhhHh
Confidence 458899999999985 5555 8889999999999888874 58888 8889999999999999876
Q ss_pred CCCCCchhccCCCCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCcc
Q 041782 166 PHSASFSWIAKQTELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPS 244 (821)
Q Consensus 166 ~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 244 (821)
.. ..++.++.|+.+++..|++.. -+|..+.++..|..||||+|+++ ..|..+..-+++-+|+|++|+|..+...
T Consensus 70 vh----GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~ 144 (1255)
T KOG0444|consen 70 VH----GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNS 144 (1255)
T ss_pred hh----hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCch
Confidence 54 678899999999999998853 57888999999999999999998 7899999999999999999999854445
Q ss_pred ccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhcc
Q 041782 245 QIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRL 324 (821)
Q Consensus 245 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 324 (821)
-|-+++.|-.|||++|++. .+|+.+..+.+|+.|+|++|.+.- ... ..+..+++|+.|.+++.+-+
T Consensus 145 lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h-fQL-rQLPsmtsL~vLhms~TqRT----------- 210 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH-FQL-RQLPSMTSLSVLHMSNTQRT----------- 210 (1255)
T ss_pred HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhH-HHH-hcCccchhhhhhhcccccch-----------
Confidence 5678999999999999998 778889999999999999998752 122 22555666777777765432
Q ss_pred CCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccE
Q 041782 325 QNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVT 404 (821)
Q Consensus 325 ~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 404 (821)
+..+|..+..+.+|..+|++.|.+. .+|..+.++ ++|+.|+|++|+++..... .+.+.+|++
T Consensus 211 -------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l--~~LrrLNLS~N~iteL~~~--~~~W~~lEt 272 (1255)
T KOG0444|consen 211 -------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL--RNLRRLNLSGNKITELNMT--EGEWENLET 272 (1255)
T ss_pred -------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhh--hhhheeccCcCceeeeecc--HHHHhhhhh
Confidence 1356677778888888888888886 678888887 7888888888888876553 566788999
Q ss_pred EEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCccc-CCccccCcccccCCCcccEEecc
Q 041782 405 LDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV-LPQCLSNSKIFKNATNLKMIDLS 483 (821)
Q Consensus 405 L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~~~~~~~l~~L~~L~Ls 483 (821)
|+++.|+++ .+|..++++++|+.|.+.+|+++-. +|..++ .+.+|+.+..+
T Consensus 273 LNlSrNQLt----------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG------KL~~Levf~aa 324 (1255)
T KOG0444|consen 273 LNLSRNQLT----------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG------KLIQLEVFHAA 324 (1255)
T ss_pred hccccchhc----------------------cchHHHhhhHHHHHHHhccCcccccCCccchh------hhhhhHHHHhh
Confidence 999988887 6788899999999999999987643 566554 47888999999
Q ss_pred CccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCC
Q 041782 484 HNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEP 542 (821)
Q Consensus 484 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 542 (821)
+|.+. ..|+.+..|..|+.|.|+.|++... |+.+.-++.|+.||+..|.-.--.|.+
T Consensus 325 nN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 325 NNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCccCCCCc
Confidence 99887 8899999999999999999998765 888888999999999998755444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-32 Score=286.64 Aligned_cols=364 Identities=28% Similarity=0.407 Sum_probs=214.9
Q ss_pred CCCCEEEccCCcCC-CCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeec
Q 041782 202 TQLTYINFDLNQLT-GPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD 280 (821)
Q Consensus 202 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 280 (821)
+-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 33445566666666 355666666666666666666555 45666666666666666666555 3334455555555555
Q ss_pred cccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCC
Q 041782 281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANK 360 (821)
Q Consensus 281 L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~ 360 (821)
+..|++... .+|..+..+..|+.|||++|+
T Consensus 85 ~R~N~LKns--------------------------------------------------GiP~diF~l~dLt~lDLShNq 114 (1255)
T KOG0444|consen 85 VRDNNLKNS--------------------------------------------------GIPTDIFRLKDLTILDLSHNQ 114 (1255)
T ss_pred hhccccccC--------------------------------------------------CCCchhcccccceeeecchhh
Confidence 555555422 122233344444455555554
Q ss_pred CCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchh
Q 041782 361 IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW 440 (821)
Q Consensus 361 l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 440 (821)
+. +.|..+... .++-.|+|++|+|..++.. .+.+++.|-.|||++|++. .+|+.
T Consensus 115 L~-EvP~~LE~A--Kn~iVLNLS~N~IetIPn~-lfinLtDLLfLDLS~NrLe----------------------~LPPQ 168 (1255)
T KOG0444|consen 115 LR-EVPTNLEYA--KNSIVLNLSYNNIETIPNS-LFINLTDLLFLDLSNNRLE----------------------MLPPQ 168 (1255)
T ss_pred hh-hcchhhhhh--cCcEEEEcccCccccCCch-HHHhhHhHhhhccccchhh----------------------hcCHH
Confidence 43 344444444 4555556666655555443 3445566666777777665 45666
Q ss_pred hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccc-ccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ-GRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519 (821)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l 519 (821)
+..+..|++|+|++|.+... ....+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+.. .|+.+
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hf------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecl 241 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHF------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECL 241 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHH------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHH
Confidence 77777888888888876533 2223344677888888876532 4578888888888888888888865 48888
Q ss_pred CCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCccccc
Q 041782 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYIL 599 (821)
Q Consensus 520 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~ 599 (821)
.++++|+.|+|++|+++.. ... .....+|++|++|+|+++ .+|.. ...++.
T Consensus 242 y~l~~LrrLNLS~N~iteL-~~~--~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~k------------------------ 292 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITEL-NMT--EGEWENLETLNLSRNQLT-VLPDA-VCKLTK------------------------ 292 (1255)
T ss_pred hhhhhhheeccCcCceeee-ecc--HHHHhhhhhhccccchhc-cchHH-HhhhHH------------------------
Confidence 8888888888888888732 111 244678888888888887 67754 233333
Q ss_pred CCccccccccccceeeeeeEEEEecceeeecccccccccEEEccccccc-CccccccccCCCCCEEeCCCcccCcchhhh
Q 041782 600 PSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI-GKIPTSISELKGLNCLNLSGNNLLGHIPSS 678 (821)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~ 678 (821)
|+.|.+.+|+++ .-||..++.|.+|+++..++|.+. ..|+.
T Consensus 293 -------------------------------------L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 293 -------------------------------------LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred -------------------------------------HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence 333444444433 234555555555555555555554 45555
Q ss_pred hcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCc
Q 041782 679 LGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNN 718 (821)
Q Consensus 679 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 718 (821)
+..+..|+.|.|++|++. .+|+.+.-|+-|+.||+..|+
T Consensus 335 lcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 555555555555555554 345555555555555555553
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4.4e-22 Score=244.59 Aligned_cols=252 Identities=21% Similarity=0.215 Sum_probs=110.6
Q ss_pred CccccCCCC-CCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc-cceecccc
Q 041782 242 LPSQIGSLT-QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN-LSLITRNT 319 (821)
Q Consensus 242 ~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~ 319 (821)
+|..|..++ +|+.|++.++.+. .+|..| ...+|++|++.+|++.. ++ ..+..+++|+.|+++++. +..++.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~--~~~~~l~~Lk~L~Ls~~~~l~~ip~-- 652 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LW--DGVHSLTGLRNIDLRGSKNLKEIPD-- 652 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cc--cccccCCCCCEEECCCCCCcCcCCc--
Confidence 344444332 3555555555444 344443 34455555555554432 11 113444555555554432 221111
Q ss_pred chhccCCCeeEEecCCCCC-chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccc
Q 041782 320 VNIRLQNKFVFLGLASCNL-KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL 398 (821)
Q Consensus 320 ~~~~~~~~L~~L~L~~~~l-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 398 (821)
...+++|+.|++++|.. ..+|..+..+++|+.|++++|...+.+|..+ ++ ++|+.|++++|......+. .
T Consensus 653 --ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l--~sL~~L~Lsgc~~L~~~p~----~ 723 (1153)
T PLN03210 653 --LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL--KSLYRLNLSGCSRLKSFPD----I 723 (1153)
T ss_pred --cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC--CCCCEEeCCCCCCcccccc----c
Confidence 11234444444444432 4566666777777777777765545555433 33 4555666555543222211 1
Q ss_pred cCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCc--ccccCCCc
Q 041782 399 WTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS--KIFKNATN 476 (821)
Q Consensus 399 ~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~--~~~~~l~~ 476 (821)
..+|++|++++|.+. .+|..+ .+++|++|++.++..... +..+... ..+..+++
T Consensus 724 ~~nL~~L~L~~n~i~----------------------~lP~~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 724 STNISWLDLDETAIE----------------------EFPSNL-RLENLDELILCEMKSEKL-WERVQPLTPLMTMLSPS 779 (1153)
T ss_pred cCCcCeeecCCCccc----------------------cccccc-cccccccccccccchhhc-cccccccchhhhhcccc
Confidence 234444444444432 233322 355666666655332110 0000000 00111344
Q ss_pred ccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCc
Q 041782 477 LKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534 (821)
Q Consensus 477 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~ 534 (821)
|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 5555555554444455555555555555555543333333332 34445555555443
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-25 Score=223.91 Aligned_cols=212 Identities=27% Similarity=0.290 Sum_probs=122.3
Q ss_pred hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519 (821)
Q Consensus 440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l 519 (821)
.|..+++|+.|++++|+++++-+. .|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|..|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDG------AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred HHhhcccceEeccCCCccchhhhh------hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 467777777777777777766443 34556777777777777765555667777777777777777777777777
Q ss_pred CCCCCCCEEEccCCcCcccCCC--------------CCccCCCCCCcEEEccCCcCcc---CCChhhhhccchhhhhccc
Q 041782 520 GTLPELKVLMLQFNRFHGEIGE--------------PDTGFVFPKLRIIDLSHNRFSG---KLPSKYFQCWNAIKVANKS 582 (821)
Q Consensus 520 ~~l~~L~~L~L~~N~l~~~~~~--------------~~~~~~l~~L~~L~Ls~N~l~g---~ip~~~~~~l~~l~~l~~~ 582 (821)
..+.+|.+|+|-.|.+.-.--. ...+.....++.++++.+.+.. .-|++ ..+.+
T Consensus 343 ~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee-~~~~~-------- 413 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE-LGCLT-------- 413 (498)
T ss_pred cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccc-cCCCC--------
Confidence 7777777777777765311000 0000112233334443333210 00000 00000
Q ss_pred cchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccE-EEcccccccCccccccccCCCC
Q 041782 583 QLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTG-IILSNNKLIGKIPTSISELKGL 661 (821)
Q Consensus 583 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-L~Ls~N~l~~~~p~~l~~L~~L 661 (821)
...-+..++-+.+ ...|+..+. .+|..+. ...
T Consensus 414 --------------------------------------------s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~ 446 (498)
T KOG4237|consen 414 --------------------------------------------SSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDV 446 (498)
T ss_pred --------------------------------------------CCCCCCCcchhhhhHhhcccchh-hcCCCCC--chh
Confidence 0000000111211 223333333 4444433 345
Q ss_pred CEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccC
Q 041782 662 NCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDN 717 (821)
Q Consensus 662 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 717 (821)
.+|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|.++++|.+|-+|||
T Consensus 447 telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 447 TELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 56888888888 66665 56777 8888888888777778888888888888886
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=8.6e-22 Score=242.03 Aligned_cols=203 Identities=21% Similarity=0.207 Sum_probs=125.8
Q ss_pred CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCC-----CCCCccccccCCCcccCCCCCCC-CCCCEEEcCC
Q 041782 87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNY-----SKIPSEIMNLSSFSGQVPSLGNL-TKLKCLELSQ 160 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~lp~~~~~l~~~~~~ip~l~~l-~~L~~L~Ls~ 160 (821)
.+|..+.+.-..+...-....++..+++|+.|.+..+.... ..+|.. +..+ .+|+.|++.+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-------------~~~lp~~Lr~L~~~~ 598 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-------------FDYLPPKLRLLRWDK 598 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-------------hhhcCcccEEEEecC
Confidence 45666665443332211122367888999999887664321 113333 4444 3588888888
Q ss_pred CCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCC
Q 041782 161 NNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG 240 (821)
Q Consensus 161 n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 240 (821)
+.+...+. .+ ...+|++|++.+|.+. .++..+..+++|++|+|+++.....+|. ++.+++|++|++++|....
T Consensus 599 ~~l~~lP~----~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~ 671 (1153)
T PLN03210 599 YPLRCMPS----NF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV 671 (1153)
T ss_pred CCCCCCCC----cC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcc
Confidence 77654432 22 3567778888777763 5666677777888888877654445553 6677777888877776555
Q ss_pred CCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCccccee
Q 041782 241 YLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI 315 (821)
Q Consensus 241 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 315 (821)
.+|..+.++++|++|++++|.....+|..+ ++++|++|++++|...+.+|. ...+|++|++++|.+..+
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIEEF 740 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCccccc
Confidence 677777777777777777765444566554 677777777777754333221 134566666666655443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=6.9e-24 Score=211.24 Aligned_cols=415 Identities=20% Similarity=0.158 Sum_probs=232.9
Q ss_pred CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccC-CcCCCCcchhhhcCCCCC
Q 041782 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDL-NQLTGPIPNWLANLNRLT 229 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~ 229 (821)
..-..++|..|.|+.+++ ..|+.+++||.|||++|+|+..-|++|..+++|..|-+.+ |+|+....+.|+++..|+
T Consensus 67 ~~tveirLdqN~I~~iP~---~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPP---GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CcceEEEeccCCcccCCh---hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 356678888888887777 5556667777777777777666666777766666655544 666655555666666777
Q ss_pred EEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782 230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA 309 (821)
Q Consensus 230 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~ 309 (821)
.|.+.-|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+.. .-+++.+.... ..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-------dCnL~wla~~~-a~ 215 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-------DCNLPWLADDL-AM 215 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-------ccccchhhhHH-hh
Confidence 77666666666666666666666666666666663322356666666666666655321 11111111000 00
Q ss_pred cccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCC
Q 041782 310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG 389 (821)
Q Consensus 310 n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~ 389 (821)
+ |..++......-..+.+.++...-+..+.... ..+..--.+.+...+
T Consensus 216 ~-------------------------------~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~-esl~s~~~~~d~~d~ 263 (498)
T KOG4237|consen 216 N-------------------------------PIETSGARCVSPYRLYYKRINQEDARKFLCSL-ESLPSRLSSEDFPDS 263 (498)
T ss_pred c-------------------------------hhhcccceecchHHHHHHHhcccchhhhhhhH-HhHHHhhccccCcCC
Confidence 0 01111111111122222222211111111000 011111112222333
Q ss_pred CCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcc
Q 041782 390 FDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469 (821)
Q Consensus 390 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~ 469 (821)
..|...+..+++|++|++++|++++ .-+.+|.+...+++|.|..|++..+ ...
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~---------------------i~~~aFe~~a~l~eL~L~~N~l~~v------~~~ 316 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITR---------------------IEDGAFEGAAELQELYLTRNKLEFV------SSG 316 (498)
T ss_pred cChHHHHhhcccceEeccCCCccch---------------------hhhhhhcchhhhhhhhcCcchHHHH------HHH
Confidence 3333344555666666666655543 4456777788888888888888755 334
Q ss_pred cccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC-----CchhhC-----------CCCCCCEEEccCC
Q 041782 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI-----FPSWLG-----------TLPELKVLMLQFN 533 (821)
Q Consensus 470 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~-----------~l~~L~~L~L~~N 533 (821)
+|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+.-- ..+|+. .-..++.+.+++.
T Consensus 317 ~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv 396 (498)
T KOG4237|consen 317 MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDV 396 (498)
T ss_pred hhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhc
Confidence 677788888899999998888888888888888888888766421 112222 1224556666665
Q ss_pred cCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccce
Q 041782 534 RFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQY 613 (821)
Q Consensus 534 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 613 (821)
.+... .+. .=++. ++.-++..|+. ..++..... .
T Consensus 397 ~~~~~-----~c~---~~ee~---~~~~s~~cP~~-c~c~~tVvR--c-------------------------------- 430 (498)
T KOG4237|consen 397 AFGDF-----RCG---GPEEL---GCLTSSPCPPP-CTCLDTVVR--C-------------------------------- 430 (498)
T ss_pred ccccc-----ccC---Ccccc---CCCCCCCCCCC-cchhhhhHh--h--------------------------------
Confidence 54311 000 00010 12222334433 111111100 0
Q ss_pred eeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCC
Q 041782 614 IYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN 693 (821)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 693 (821)
+.+.......+++...++|++.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|.++++|.+|.||+|
T Consensus 431 --------Snk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 431 --------SNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred --------cccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 000000111122334678999999998 77877 67888 8999999999777778999999999999987
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=5.7e-21 Score=217.25 Aligned_cols=222 Identities=28% Similarity=0.354 Sum_probs=127.7
Q ss_pred CCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccE
Q 041782 400 TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKM 479 (821)
Q Consensus 400 ~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~ 479 (821)
++|++|++++|+++. +|..+.+++.|++++|.+. .+|.. ..+|+.|++++|+++. +|.. +++|+.
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---------p~~L~~ 306 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---------PPGLQE 306 (788)
T ss_pred CCCcEEEecCCccCc-ccCcccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-cccc---------ccccce
Confidence 344444444444442 2222334444444444433 22221 2346666677766653 2321 355677
Q ss_pred EeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCC
Q 041782 480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559 (821)
Q Consensus 480 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 559 (821)
|++++|++++ +|.. ..+|+.|++++|+++++ |.. ..+|+.|+|++|++++ +|.. .++|+.|++++|
T Consensus 307 LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N 372 (788)
T PRK15387 307 LSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-PTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNN 372 (788)
T ss_pred eECCCCcccc-CCCC---cccccccccccCccccc-ccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcc
Confidence 7777776663 3331 23466666777766653 321 2356777777777663 3321 345666677777
Q ss_pred cCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccE
Q 041782 560 RFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTG 639 (821)
Q Consensus 560 ~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 639 (821)
+++ .+|.. ...|+.
T Consensus 373 ~L~-~LP~l-----------------------------------------------------------------~~~L~~ 386 (788)
T PRK15387 373 RLT-SLPAL-----------------------------------------------------------------PSGLKE 386 (788)
T ss_pred ccc-cCccc-----------------------------------------------------------------ccccce
Confidence 665 34421 112667
Q ss_pred EEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcc
Q 041782 640 IILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL 719 (821)
Q Consensus 640 L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 719 (821)
|++++|++++ +|.. .++|+.|++++|+++ .+|..+ ..|+.|++++|+|+ .+|..+.++++|+.|++++|+|
T Consensus 387 LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 387 LIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred EEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 7778887773 5543 256777888888877 356432 45677888888877 5777777788888888888888
Q ss_pred cccCCC
Q 041782 720 TGQIPQ 725 (821)
Q Consensus 720 ~g~iP~ 725 (821)
+|.+|.
T Consensus 458 s~~~~~ 463 (788)
T PRK15387 458 SERTLQ 463 (788)
T ss_pred CchHHH
Confidence 876654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2e-20 Score=212.79 Aligned_cols=264 Identities=23% Similarity=0.260 Sum_probs=127.2
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782 179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS 258 (821)
Q Consensus 179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 258 (821)
.-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|+++. +|.. .++|++|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 3455666666664 4565554 35666666666666 3443 23566666666666663 3432 3456666666
Q ss_pred CccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC
Q 041782 259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338 (821)
Q Consensus 259 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l 338 (821)
+|.+. .+|.. .++|+.|++++|+++. +|. ..++|+.|++++|.++.++. ...+|+.|++++|.+
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~-----~p~~L~~LdLS~N~L~~Lp~------lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV-----LPPGLQELSVSDNQLASLPA------LPSELCKLWAYNNQL 334 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-ccc-----cccccceeECCCCccccCCC------CcccccccccccCcc
Confidence 66655 33332 2345566666666552 221 13456666666665554432 122344444444444
Q ss_pred chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCC
Q 041782 339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI 418 (821)
Q Consensus 339 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 418 (821)
..+|.. ..+|+.|++++|++.+ +|... .+|+.|++++|.++.++.. ..+|+.|++++|+++
T Consensus 335 ~~LP~l---p~~Lq~LdLS~N~Ls~-LP~lp-----~~L~~L~Ls~N~L~~LP~l-----~~~L~~LdLs~N~Lt----- 395 (788)
T PRK15387 335 TSLPTL---PSGLQELSVSDNQLAS-LPTLP-----SELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLT----- 395 (788)
T ss_pred cccccc---ccccceEecCCCccCC-CCCCC-----cccceehhhccccccCccc-----ccccceEEecCCccc-----
Confidence 444321 1234444444444432 22110 2333344444443332210 122333333333332
Q ss_pred CCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782 419 PPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC 498 (821)
Q Consensus 419 ~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 498 (821)
+ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+
T Consensus 396 ----------------~-LP~l---~s~L~~LdLS~N~Lss-IP~l---------~~~L~~L~Ls~NqLt-~LP~sl~~L 444 (788)
T PRK15387 396 ----------------S-LPVL---PSELKELMVSGNRLTS-LPML---------PSGLLSLSVYRNQLT-RLPESLIHL 444 (788)
T ss_pred ----------------C-CCCc---ccCCCEEEccCCcCCC-CCcc---------hhhhhhhhhccCccc-ccChHHhhc
Confidence 1 2221 1346666666666653 3421 234556666666665 456666666
Q ss_pred CCCCEEeCCCCcCCcCCchhh
Q 041782 499 TMLEFLDLGNNQIADIFPSWL 519 (821)
Q Consensus 499 ~~L~~L~L~~n~l~~~~~~~l 519 (821)
++|+.|+|++|++++..+..+
T Consensus 445 ~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 445 SSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCeEECCCCCCCchHHHHH
Confidence 666666666666665555444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.6e-19 Score=207.15 Aligned_cols=250 Identities=23% Similarity=0.302 Sum_probs=139.8
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
+...|+++++.++.. | ..+ .+.|++|++++|++. .+|..+. ++|++|++++|.++ .+|..+. .+|+.|
T Consensus 179 ~~~~L~L~~~~LtsL-P---~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTTI-P---ACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCcC-C---ccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEE
Confidence 445566666655543 2 111 135666666666554 3444432 35666666666665 3444432 356666
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 311 (821)
++++|.+. .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++++|++++ +|. . + .++|+.|++++|.
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~-~-l--p~sL~~L~Ls~N~ 315 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA-H-L--PSGITHLNVQSNS 315 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccc-c-c--hhhHHHHHhcCCc
Confidence 66666665 4454443 35666666666666 3454443 356666666666653 221 1 1 1356666666666
Q ss_pred cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782 312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD 391 (821)
Q Consensus 312 l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~ 391 (821)
++.++.. ..++|+.|++++|.+..+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++.++
T Consensus 316 Lt~LP~~-----l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp----~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 316 LTALPET-----LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP----PTITTLDVSRNALTNLP 383 (754)
T ss_pred cccCCcc-----ccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhc----CCcCEEECCCCcCCCCC
Confidence 6654332 13567777777777766766553 68888999988886 4565442 56778888887777654
Q ss_pred CCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCc
Q 041782 392 RGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458 (821)
Q Consensus 392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 458 (821)
+. . ...|+.|++++|++.. +|. .+|.....++.+..|++.+|.++
T Consensus 384 ~~--l--~~sL~~LdLs~N~L~~-LP~-----------------sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 EN--L--PAALQIMQASRNNLVR-LPE-----------------SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Hh--H--HHHHHHHhhccCCccc-Cch-----------------hHHHHhhcCCCccEEEeeCCCcc
Confidence 32 1 1245566666665542 111 12233334456666666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.9e-19 Score=204.94 Aligned_cols=181 Identities=25% Similarity=0.390 Sum_probs=91.3
Q ss_pred CeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEE
Q 041782 327 KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD 406 (821)
Q Consensus 327 ~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 406 (821)
+...|+++++.+..+|..+. +.|+.|++++|+++ .+|..+. .+|++|++++|.++.++.. ...+|+.|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~----l~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPAT----LPDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChh----hhccccEEE
Confidence 34566666666666665432 45666666666665 3343322 3556666666655544321 113455555
Q ss_pred eccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcc
Q 041782 407 LRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL 486 (821)
Q Consensus 407 L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~ 486 (821)
+++|.+. .+|..+. .+|+.|++++|+++ .+|..+ .++|+.|++++|+
T Consensus 248 Ls~N~L~----------------------~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l--------~~sL~~L~Ls~N~ 294 (754)
T PRK15370 248 LSINRIT----------------------ELPERLP--SALQSLDLFHNKIS-CLPENL--------PEELRYLSVYDNS 294 (754)
T ss_pred CcCCccC----------------------cCChhHh--CCCCEEECcCCccC-cccccc--------CCCCcEEECCCCc
Confidence 5555443 2333332 35666666666665 344332 1356666666666
Q ss_pred ccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCc
Q 041782 487 LQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562 (821)
Q Consensus 487 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 562 (821)
++ .+|..+. ++|+.|++++|+++.. |..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|+++
T Consensus 295 Lt-~LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 295 IR-TLPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASL----PPELQVLDVSKNQIT 359 (754)
T ss_pred cc-cCcccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhh----cCcccEEECCCCCCC
Confidence 65 2333322 3455666666666543 2222 2455666666665553 33322 345666666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=7e-19 Score=188.31 Aligned_cols=73 Identities=29% Similarity=0.360 Sum_probs=33.0
Q ss_pred hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccc----cCchhhcCCCCCCEEeCCCCcCCcC
Q 041782 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQG----RIPRSLANCTMLEFLDLGNNQIADI 514 (821)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~ 514 (821)
+..+++|++|++++|.+++.....+... .....+.|++|++++|.+++ .+...+..+++|+++++++|.++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~-~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASA-LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHH-HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 3444556666666655553211111100 00012455555665555541 1223344445566666666665543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.3e-18 Score=186.36 Aligned_cols=118 Identities=26% Similarity=0.248 Sum_probs=72.5
Q ss_pred hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhc-----CCCCCCEEeCCCCcCCcC
Q 041782 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA-----NCTMLEFLDLGNNQIADI 514 (821)
Q Consensus 440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~ 514 (821)
.+..+++|++|++++|.+.+.....+. ..+..+++|++|++++|.+++.....+. ..+.|+.|++++|.+++.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~--~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHH--HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence 344456788888888877644322221 1244567888888888888753333222 237888888888888632
Q ss_pred ----CchhhCCCCCCCEEEccCCcCccc----CCCCCccCCC-CCCcEEEccCCcC
Q 041782 515 ----FPSWLGTLPELKVLMLQFNRFHGE----IGEPDTGFVF-PKLRIIDLSHNRF 561 (821)
Q Consensus 515 ----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l-~~L~~L~Ls~N~l 561 (821)
+...+..+++|+++++++|.+... +.... ... +.|+++++.+|++
T Consensus 266 ~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 266 GAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL--LEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH--hhcCCchhhcccCCCCC
Confidence 234455667888888888887633 11111 112 5777777777653
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=5.8e-16 Score=177.67 Aligned_cols=117 Identities=44% Similarity=0.756 Sum_probs=105.5
Q ss_pred ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD 716 (821)
Q Consensus 637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 716 (821)
++.|+|++|.+.|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCC--CCCCCCCCccCCCCCCCCCCCCCCCC
Q 041782 717 NNLTGQIPQGK--QFNTFENSSFEGNPGLCGKPLSRNCE 753 (821)
Q Consensus 717 N~l~g~iP~~~--~~~~~~~~~~~gn~~lc~~~~~~~c~ 753 (821)
|+++|.+|... .+.......+.||+.+|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999752 12333456789999999977656663
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.8e-18 Score=151.91 Aligned_cols=161 Identities=29% Similarity=0.435 Sum_probs=98.5
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN 226 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 226 (821)
+.++.+++.|.||+|+++...| .++.+.+|++|++++|++ .++|.+++.+++|+.|+++-|++. ..|..|+.++
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vpp----nia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPP----NIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCceeecCC----cHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 4455555556666666654443 355566666666666655 355666666666666666666665 5666666666
Q ss_pred CCCEEEccCCcCC-CCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeE
Q 041782 227 RLTILSLKSNQLR-GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL 305 (821)
Q Consensus 227 ~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L 305 (821)
.|++|||.+|++. ..+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+.. .| ..++.+..|++|
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lp--keig~lt~lrel 178 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LP--KEIGDLTRLREL 178 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-Cc--HHHHHHHHHHHH
Confidence 6666666666654 245666666666666666666666 566666666666666666666542 22 235666666666
Q ss_pred ECCCcccceecc
Q 041782 306 FLSANNLSLITR 317 (821)
Q Consensus 306 ~L~~n~l~~~~~ 317 (821)
++.+|+++.+++
T Consensus 179 hiqgnrl~vlpp 190 (264)
T KOG0617|consen 179 HIQGNRLTVLPP 190 (264)
T ss_pred hcccceeeecCh
Confidence 666666665544
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-17 Score=145.57 Aligned_cols=165 Identities=27% Similarity=0.444 Sum_probs=106.5
Q ss_pred cCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCe
Q 041782 199 MNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEY 278 (821)
Q Consensus 199 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 278 (821)
.++.+.+.|.||+|+++ .+|..+..+.+|++|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34556666667777766 45556667777777777777766 56666777777777777777666 66777777777777
Q ss_pred eccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEeccc
Q 041782 279 LDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSA 358 (821)
Q Consensus 279 L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~ 358 (821)
||+.+|++...... +.|..++.|+.|++++|.+..++++. ..+++|+.|.+.+|.+-++|..++.+..|++|.+.+
T Consensus 107 ldltynnl~e~~lp-gnff~m~tlralyl~dndfe~lp~dv---g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 107 LDLTYNNLNENSLP-GNFFYMTTLRALYLGDNDFEILPPDV---GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhccccccccccCC-cchhHHHHHHHHHhcCCCcccCChhh---hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 77777766543322 34555666666666666665555443 245566666666666667777777777777777777
Q ss_pred CCCCCCCCcchhc
Q 041782 359 NKIPGKIPGWLLN 371 (821)
Q Consensus 359 n~l~~~~p~~l~~ 371 (821)
|+++ .+|..+++
T Consensus 183 nrl~-vlppel~~ 194 (264)
T KOG0617|consen 183 NRLT-VLPPELAN 194 (264)
T ss_pred ceee-ecChhhhh
Confidence 7776 44444443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=4.2e-14 Score=162.45 Aligned_cols=137 Identities=31% Similarity=0.473 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCc----cccceeeCCC--C--CCEEEEEcCCCCC
Q 041782 28 HQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCC----SWDGVKCNED--T--GHVIKLNLTSSCI 99 (821)
Q Consensus 28 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c----~w~gv~C~~~--~--~~v~~L~L~~~~l 99 (821)
...+.++|.+||+++|+++..+. ..+|+. ..|| .|.||.|... . .+|+.|+|+++.+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~-----------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L 430 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL-----------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL 430 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc-----------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCc
Confidence 34567789999999999985432 247964 3442 7999999532 2 2477888888877
Q ss_pred cccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCC
Q 041782 100 YGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTE 179 (821)
Q Consensus 100 ~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~ 179 (821)
.|.++. .+.++++|+.|+|++|.+.+ .+|+. ++.+++|++|+|++|++++.+| ..++++++
T Consensus 431 ~g~ip~--~i~~L~~L~~L~Ls~N~l~g-~iP~~-------------~~~l~~L~~LdLs~N~lsg~iP---~~l~~L~~ 491 (623)
T PLN03150 431 RGFIPN--DISKLRHLQSINLSGNSIRG-NIPPS-------------LGSITSLEVLDLSYNSFNGSIP---ESLGQLTS 491 (623)
T ss_pred cccCCH--HHhCCCCCCEEECCCCcccC-cCChH-------------HhCCCCCCEEECCCCCCCCCCc---hHHhcCCC
Confidence 777765 66666666666666666643 24444 5555666666666666655555 44444444
Q ss_pred CCEEecCCccccccCCccc
Q 041782 180 LSWLALANINLIGEFPSWL 198 (821)
Q Consensus 180 L~~L~L~~n~~~~~~p~~l 198 (821)
|++|+|++|.+.+.+|..+
T Consensus 492 L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCEEECcCCcccccCChHH
Confidence 4444444444444444443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.9e-12 Score=136.08 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=42.4
Q ss_pred ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhh---cCccCCCeEeCCCCc
Q 041782 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSL---GNLTVLESLDLSNNN 694 (821)
Q Consensus 637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~ 694 (821)
|..||+|+|+++ .||-+|.+|+.|++|-|.+|.+. ..|..+ |...--++|+..-++
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 677888888888 78888888888888888888888 666554 333444677777774
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.2e-11 Score=126.43 Aligned_cols=161 Identities=31% Similarity=0.304 Sum_probs=88.3
Q ss_pred hcCCCCCEEEccCCcCCCCCc--cccCCCCCCCEEEccCccCCCCCC--ccccCCCCcCeeccccCCceeecccccccCC
Q 041782 223 ANLNRLTILSLKSNQLRGYLP--SQIGSLTQLTALDLSCNQFQGPVP--SSISELKRLEYLDLHSNNLSGNVYIEELLPK 298 (821)
Q Consensus 223 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 298 (821)
.++.+|+...|.++.+.. .+ .....+++++.|||+.|-+..-.+ ....++++|+.|+++.|++...... ..-.
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTL- 194 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchh-
Confidence 356677777777766652 22 244556677777777765552211 2224566666666666665421111 0011
Q ss_pred CCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC--chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCC
Q 041782 299 LKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL--KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGN 376 (821)
Q Consensus 299 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l--~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~ 376 (821)
.++.|+.|.++.|.+ ..+-..+..+|+|+.|++..|............+ ..
T Consensus 195 -------------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--~~ 247 (505)
T KOG3207|consen 195 -------------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--QT 247 (505)
T ss_pred -------------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--hH
Confidence 244555556666655 3444456667888888888885222211112222 56
Q ss_pred eeEEEcCCCCCCCCCCCccccccCCccEEEeccCccc
Q 041782 377 LQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQ 413 (821)
Q Consensus 377 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 413 (821)
|+.|+|++|++..+......+.++.|+.|+++.+.+.
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 7777777777776665444555566666666665554
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=1.6e-12 Score=136.71 Aligned_cols=195 Identities=30% Similarity=0.459 Sum_probs=118.2
Q ss_pred CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCC
Q 041782 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523 (821)
Q Consensus 444 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 523 (821)
+..-...|++.|++. .+|...+ .+..|+.+.+..|.+. .+|..+.++..|+.|||+.|++... |..+..++
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~------~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEAC------AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP 144 (722)
T ss_pred ccchhhhhccccccc-cCchHHH------HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc
Confidence 444556677777776 4454332 2456777777777776 6677777777777777777777654 44555554
Q ss_pred CCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcc
Q 041782 524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSS 603 (821)
Q Consensus 524 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 603 (821)
|+.|-+++|+++ .+|+.+ +..+.|..||.+.|.+. .+|.. +..+
T Consensus 145 -Lkvli~sNNkl~-~lp~~i--g~~~tl~~ld~s~nei~-slpsq-l~~l------------------------------ 188 (722)
T KOG0532|consen 145 -LKVLIVSNNKLT-SLPEEI--GLLPTLAHLDVSKNEIQ-SLPSQ-LGYL------------------------------ 188 (722)
T ss_pred -ceeEEEecCccc-cCCccc--ccchhHHHhhhhhhhhh-hchHH-hhhH------------------------------
Confidence 677777777766 455555 35666777777777665 45543 1111
Q ss_pred ccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCcc
Q 041782 604 AYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLT 683 (821)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~ 683 (821)
..|+.|.+..|++. ..|+++..| .|..||+|+|+++ .||-.|..|+
T Consensus 189 -------------------------------~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~ 234 (722)
T KOG0532|consen 189 -------------------------------TSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMR 234 (722)
T ss_pred -------------------------------HHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhh
Confidence 12445556666665 556666644 3556777777777 6777777777
Q ss_pred CCCeEeCCCCcccccCCCCccc---cCCccEEEcccCc
Q 041782 684 VLESLDLSNNNLSGEIPRQLAE---LTSLAVFDVSDNN 718 (821)
Q Consensus 684 ~L~~L~Ls~N~l~~~~p~~l~~---l~~L~~L~ls~N~ 718 (821)
.|++|-|.+|.|. ..|..+.. ..=.++|+..-++
T Consensus 235 ~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 235 HLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 7777777777776 33443322 2233555555553
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=9.6e-11 Score=137.40 Aligned_cols=133 Identities=21% Similarity=0.311 Sum_probs=82.0
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcc--ccccCCccccCCCCCCEEEccCCcCCCCcchhhhc
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN--LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLAN 224 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~--~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 224 (821)
..+....+...+-+|.+..... -...++|++|-+.+|. +....+..|..++.|++|||++|.--+.+|..+++
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~-----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAG-----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred ccchhheeEEEEeccchhhccC-----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 3444556666666665543221 1234466666666665 22222233566777777777776655567777777
Q ss_pred CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCC
Q 041782 225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN 285 (821)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 285 (821)
+.+|++|+++++.+. .+|..+.++++|.+|++..+.....+|.....+++|++|.+..-.
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 777777777777776 667777777777777777666554555555667777777766544
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.6e-10 Score=108.46 Aligned_cols=109 Identities=27% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhcc-CCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhh-hc
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIA-KQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL-AN 224 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~ 224 (821)
+.+..++++|+|++|.|+.+ ..++ .+.+|++|++++|.+... +.+..++.|++|++++|+|+. +.+.+ ..
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKN 86 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH
T ss_pred cccccccccccccccccccc-----cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHh
Confidence 55566778888888877654 2344 456677777777776532 236667777777777777773 33333 35
Q ss_pred CCCCCEEEccCCcCCCCC-ccccCCCCCCCEEEccCccCC
Q 041782 225 LNRLTILSLKSNQLRGYL-PSQIGSLTQLTALDLSCNQFQ 263 (821)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~ 263 (821)
+++|++|++++|+|...- -..+..+++|++|++.+|.++
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 677777777777765321 134455666667777666665
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=3.6e-10 Score=124.55 Aligned_cols=198 Identities=33% Similarity=0.432 Sum_probs=146.8
Q ss_pred EEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCC-CCCEEEcCCCCCCCCCCC
Q 041782 91 KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT-KLKCLELSQNNFSSPHSA 169 (821)
Q Consensus 91 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~-~L~~L~Ls~n~~~~~~~~ 169 (821)
.+++..+.+...+. .+..++.++.|++.+|.++ ++|.. ...+. +|+.|++++|.+....
T Consensus 97 ~l~~~~~~~~~~~~---~~~~~~~l~~L~l~~n~i~--~i~~~-------------~~~~~~nL~~L~l~~N~i~~l~-- 156 (394)
T COG4886 97 SLDLNLNRLRSNIS---ELLELTNLTSLDLDNNNIT--DIPPL-------------IGLLKSNLKELDLSDNKIESLP-- 156 (394)
T ss_pred eeeccccccccCch---hhhcccceeEEecCCcccc--cCccc-------------cccchhhcccccccccchhhhh--
Confidence 46666666544332 4566688888888888885 35554 45553 8899999998887542
Q ss_pred CchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCC
Q 041782 170 SFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSL 249 (821)
Q Consensus 170 ~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 249 (821)
..+..+++|+.|++++|++. .+|...+.+++|+.|++++|+++ .+|..+.....|++|.+++|.+. ..+..+.++
T Consensus 157 --~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~ 231 (394)
T COG4886 157 --SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL 231 (394)
T ss_pred --hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc
Confidence 34678888999999988885 55665668888888999999888 66766666677888888888644 456677888
Q ss_pred CCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccc
Q 041782 250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRN 318 (821)
Q Consensus 250 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 318 (821)
+++..+.+.+|++. ..+..++.+++++.|++++|.++.. + .+..+.+++.|++++|.+....+.
T Consensus 232 ~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~---~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 232 KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-S---SLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccccCCceee-eccchhccccccceecccccccccc-c---cccccCccCEEeccCccccccchh
Confidence 88888888888877 3466778888888999988888742 2 277888888888888887765443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=5.4e-10 Score=123.14 Aligned_cols=149 Identities=34% Similarity=0.427 Sum_probs=92.7
Q ss_pred EEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCC-CCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782 155 CLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT-QLTYINFDLNQLTGPIPNWLANLNRLTILSL 233 (821)
Q Consensus 155 ~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 233 (821)
.++++.|.+.... ..+..++.++.|++.+|.+. .+|.....++ +|++|++++|.+. .+|..+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNI----SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCc----hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence 5666666663322 23445566777777777664 4555555553 7777777777776 55556677777777777
Q ss_pred cCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccc
Q 041782 234 KSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS 313 (821)
Q Consensus 234 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 313 (821)
++|+++ .+|...+..++|+.|++++|++. .+|........|++|.+++|.+.... ..+.++.++..+.+.+|++.
T Consensus 171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred CCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCceee
Confidence 777777 44554556777777777777777 55555555566777777777433221 22555666666666665554
Q ss_pred e
Q 041782 314 L 314 (821)
Q Consensus 314 ~ 314 (821)
.
T Consensus 246 ~ 246 (394)
T COG4886 246 D 246 (394)
T ss_pred e
Confidence 3
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.7e-10 Score=108.35 Aligned_cols=109 Identities=31% Similarity=0.416 Sum_probs=32.6
Q ss_pred CCCCCCEEEccCCcCCCCcchhhh-cCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccc-cCCCCcC
Q 041782 200 NLTQLTYINFDLNQLTGPIPNWLA-NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI-SELKRLE 277 (821)
Q Consensus 200 ~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~ 277 (821)
+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++. +.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 44456666666666652 2 2343 355666666666666633 345666667777777776663 33333 3466677
Q ss_pred eeccccCCceeecccccccCCCCCCCeEECCCcccce
Q 041782 278 YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL 314 (821)
Q Consensus 278 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 314 (821)
+|++++|++...-.. ..+..+++|+.|++.+|+++.
T Consensus 92 ~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 92 ELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGG
T ss_pred EEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccc
Confidence 777777766543222 346667777777777777654
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.9e-11 Score=121.97 Aligned_cols=212 Identities=23% Similarity=0.208 Sum_probs=100.6
Q ss_pred CCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC---chhhhhhcCCCccceEecccCCCCCCCCcchhccC
Q 041782 297 PKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL---KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVT 373 (821)
Q Consensus 297 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~ 373 (821)
.++++|+++.|.+..+....... ....+++++.|+++.|-+ ..+......+++|+.|+++.|++.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~-~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~----------- 185 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEE-YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS----------- 185 (505)
T ss_pred hhHHhhhheeecCccccccchhh-hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-----------
Confidence 35667777777777665444321 123455555555555544 222333444555555555555443
Q ss_pred CCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcC
Q 041782 374 TGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLS 453 (821)
Q Consensus 374 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls 453 (821)
..........++.|+.|.|+.|.++.. .+...+..+|+|+.|+++
T Consensus 186 ---------------~~~~s~~~~~l~~lK~L~l~~CGls~k--------------------~V~~~~~~fPsl~~L~L~ 230 (505)
T KOG3207|consen 186 ---------------NFISSNTTLLLSHLKQLVLNSCGLSWK--------------------DVQWILLTFPSLEVLYLE 230 (505)
T ss_pred ---------------CCccccchhhhhhhheEEeccCCCCHH--------------------HHHHHHHhCCcHHHhhhh
Confidence 222221222344555555555555410 112223345666666666
Q ss_pred CCcCcccCCccccCcccccCCCcccEEeccCccccccC-chhhcCCCCCCEEeCCCCcCCcC-Cchh-----hCCCCCCC
Q 041782 454 HNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI-PRSLANCTMLEFLDLGNNQIADI-FPSW-----LGTLPELK 526 (821)
Q Consensus 454 ~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~ 526 (821)
.|..... ......-+..|+.|||++|.+.... -...+.++.|+.|+++.|.+..+ .|+. ...+++|+
T Consensus 231 ~N~~~~~------~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 231 ANEIILI------KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred cccccce------ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 6631111 0111223455666666666654221 12345566666666666666544 2222 23456666
Q ss_pred EEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCc
Q 041782 527 VLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562 (821)
Q Consensus 527 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 562 (821)
+|++..|++. .++.......+++|+.|.+..|.++
T Consensus 305 ~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 305 YLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 6666666653 1122111233455555555555554
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=3.8e-11 Score=119.57 Aligned_cols=120 Identities=23% Similarity=0.210 Sum_probs=64.7
Q ss_pred hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCch-------------hhcCCCCCCEEeCC
Q 041782 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPR-------------SLANCTMLEFLDLG 507 (821)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-------------~~~~l~~L~~L~L~ 507 (821)
+..+++|++||||+|.+.-..+..+.. .+..+..|++|.|.+|.+.-.--. ....-+.|+++..+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~--ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEE--LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHH--HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 344556666666666665444443322 234466666666666665421111 12234567777777
Q ss_pred CCcCCcCC----chhhCCCCCCCEEEccCCcCcccCC--CCCccCCCCCCcEEEccCCcCc
Q 041782 508 NNQIADIF----PSWLGTLPELKVLMLQFNRFHGEIG--EPDTGFVFPKLRIIDLSHNRFS 562 (821)
Q Consensus 508 ~n~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~ 562 (821)
.|++..-. ...|...+.|+.+.+..|.|...-. .......+++|+.|||.+|-|+
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 77765442 2334556677777777776641110 0112245677777777777665
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=3.9e-11 Score=119.55 Aligned_cols=95 Identities=28% Similarity=0.336 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCCCcc----cccCCcccccCCCCCEEeCCCCCCCC---CCCCccccccCCCcccCCCCCCCCCCCEEEcC
Q 041782 87 GHVIKLNLTSSCIYG----SINSSSSLFHLRHLEWLSLADNNFNY---SKIPSEIMNLSSFSGQVPSLGNLTKLKCLELS 159 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g----~~~~~~~l~~l~~L~~L~Ls~n~~~~---~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls 159 (821)
..++.|+|+++.+.- .+.. .+.+.++|+.-++|+- ++| .++|+.+..|+ +.+..+++|++||||
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~--~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~------~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAK--VLASKKELREVNLSDM-FTGRLKDEIPEALKMLS------KALLGCPKLQKLDLS 100 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHH--HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHH------HHHhcCCceeEeecc
Confidence 467888888887642 2323 5777788888888754 222 22444322221 114556688888888
Q ss_pred CCCCCCCCCCCchh-ccCCCCCCEEecCCccc
Q 041782 160 QNNFSSPHSASFSW-IAKQTELSWLALANINL 190 (821)
Q Consensus 160 ~n~~~~~~~~~~~~-l~~l~~L~~L~L~~n~~ 190 (821)
.|.|.-..+..|.. +..+..|++|.|.+|.+
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 88877554433322 34566677777777665
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.4e-10 Score=112.61 Aligned_cols=116 Identities=27% Similarity=0.250 Sum_probs=81.9
Q ss_pred CCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC
Q 041782 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF 515 (821)
Q Consensus 436 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 515 (821)
.+.+++.-.|.++.|++++|.+..+ ..+..+++|+.|||++|.++ .+..+-..+.+.++|.|++|.|...
T Consensus 298 ~iDESvKL~Pkir~L~lS~N~i~~v--------~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L- 367 (490)
T KOG1259|consen 298 QIDESVKLAPKLRRLILSQNRIRTV--------QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL- 367 (490)
T ss_pred hhhhhhhhccceeEEeccccceeee--------hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh-
Confidence 3445556677888888888887644 12445778888888888877 4555666777888888888887665
Q ss_pred chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc
Q 041782 516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG 563 (821)
Q Consensus 516 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g 563 (821)
..++++-+|..||+++|+|... ......+.+|-|+.+.|.+|++.+
T Consensus 368 -SGL~KLYSLvnLDl~~N~Ie~l-deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 368 -SGLRKLYSLVNLDLSSNQIEEL-DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred -hhhHhhhhheeccccccchhhH-HHhcccccccHHHHHhhcCCCccc
Confidence 4577778888888888887632 222233668888888888888874
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=1.5e-09 Score=127.38 Aligned_cols=153 Identities=22% Similarity=0.326 Sum_probs=111.6
Q ss_pred cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCC--CCCCCCCCchhccCCCCCCEEecC
Q 041782 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN--FSSPHSASFSWIAKQTELSWLALA 186 (821)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~--~~~~~~~~~~~l~~l~~L~~L~L~ 186 (821)
.......|...+-+|.+.. ++.. ...++|++|-+..|. +..... ..|..++.|++|||+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~--~~~~--------------~~~~~L~tLll~~n~~~l~~is~---~ff~~m~~LrVLDLs 579 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH--IAGS--------------SENPKLRTLLLQRNSDWLLEISG---EFFRSLPLLRVLDLS 579 (889)
T ss_pred ccchhheeEEEEeccchhh--ccCC--------------CCCCccceEEEeecchhhhhcCH---HHHhhCcceEEEECC
Confidence 3444667777777776632 3322 345578999888886 444433 557889999999999
Q ss_pred CccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCC--C
Q 041782 187 NINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ--G 264 (821)
Q Consensus 187 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~ 264 (821)
+|.-.+.+|..++++-+||+|+++++.+. .+|..++++..|.+|++..+.....+|.....+++|++|.+...... .
T Consensus 580 ~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 580 GNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred CCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence 98888899999999999999999999998 88999999999999999988765566777777999999998765422 2
Q ss_pred CCCccccCCCCcCeecc
Q 041782 265 PVPSSISELKRLEYLDL 281 (821)
Q Consensus 265 ~~p~~l~~l~~L~~L~L 281 (821)
..-..+.++..|+.+..
T Consensus 659 ~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 659 LLLKELENLEHLENLSI 675 (889)
T ss_pred hhHHhhhcccchhhhee
Confidence 22223344444544444
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.85 E-value=3.4e-09 Score=74.51 Aligned_cols=42 Identities=45% Similarity=0.889 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccccceeeC
Q 041782 33 AGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCN 83 (821)
Q Consensus 33 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~ 83 (821)
++|++||++||+++..++. ..+.+|+.. .+.+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~--------~~l~~W~~~-~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS--------GVLSSWNPS-SDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC---------CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC--------cccccCCCc-CCCCCeeeccEEeC
Confidence 5799999999999986442 279999872 12799999999995
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=2e-09 Score=82.94 Aligned_cols=60 Identities=47% Similarity=0.651 Sum_probs=38.4
Q ss_pred CCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcc
Q 041782 660 GLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL 719 (821)
Q Consensus 660 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 719 (821)
+|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655455666666666666666666666666666666666666666654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=4.9e-09 Score=80.79 Aligned_cols=60 Identities=50% Similarity=0.589 Sum_probs=56.2
Q ss_pred cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcc
Q 041782 636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNL 695 (821)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 695 (821)
.|+.|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 589999999999977778899999999999999999988889999999999999999986
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=2.5e-09 Score=104.04 Aligned_cols=109 Identities=26% Similarity=0.233 Sum_probs=57.6
Q ss_pred CCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCee
Q 041782 299 LKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQ 378 (821)
Q Consensus 299 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~ 378 (821)
.+.++.|++++|.+..+... ..+++|+.|++++|.+.++..|-.++-+++.|.|++|.+... ..+..+ -+|.
T Consensus 306 ~Pkir~L~lS~N~i~~v~nL----a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KL--YSLv 377 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNL----AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKL--YSLV 377 (490)
T ss_pred ccceeEEeccccceeeehhh----hhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhh--hhhe
Confidence 34444444444444433321 224444444444444444444445555666666666655321 223333 4566
Q ss_pred EEEcCCCCCCCCCCCccccccCCccEEEeccCcccCc
Q 041782 379 FVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGP 415 (821)
Q Consensus 379 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 415 (821)
.|++++|++........++.+|.|+++.|.+|.+.+.
T Consensus 378 nLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 378 NLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 6666666666555544566677777777777776543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.4e-09 Score=119.91 Aligned_cols=196 Identities=31% Similarity=0.318 Sum_probs=111.3
Q ss_pred CCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCC
Q 041782 150 LTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLT 229 (821)
Q Consensus 150 l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 229 (821)
+..++.+++..|.+.... ..+..+++|+.|++.+|.+.+. ...+..+++|++|++++|.|+... .+..++.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~----~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~ 143 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKIL----NHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLK 143 (414)
T ss_pred hHhHHhhccchhhhhhhh----cccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchh
Confidence 444555555555555311 2345566666666666665432 122555666777777777666432 245556677
Q ss_pred EEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC-ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECC
Q 041782 230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308 (821)
Q Consensus 230 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~ 308 (821)
.|++++|.++.. ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+... ..+..+..+..+++.
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i----~~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI----EGLDLLKKLVLLSLL 216 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc----cchHHHHHHHHhhcc
Confidence 777777776633 445556677777777776664433 1 45666777777777766521 123334444444666
Q ss_pred CcccceeccccchhccCC--CeeEEecCCCCCchhhhhhcCCCccceEecccCCCCC
Q 041782 309 ANNLSLITRNTVNIRLQN--KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPG 363 (821)
Q Consensus 309 ~n~l~~~~~~~~~~~~~~--~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~ 363 (821)
.|.++.+..... .. .|+.+++.++.+...+..+..+.++..|++..|++..
T Consensus 217 ~n~i~~~~~l~~----~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 217 DNKISKLEGLNE----LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccceeccCccc----chhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 666655443221 11 2566666666665555556666777777777777653
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=3e-09 Score=117.28 Aligned_cols=108 Identities=35% Similarity=0.394 Sum_probs=56.3
Q ss_pred CCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCee
Q 041782 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYL 279 (821)
Q Consensus 200 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 279 (821)
.+..++.+++..|.+.. +-..+..+++|+.|++.+|+|... ...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 44555555566666552 233355566666666666666533 22245566666666666666533 224445556666
Q ss_pred ccccCCceeecccccccCCCCCCCeEECCCccccee
Q 041782 280 DLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI 315 (821)
Q Consensus 280 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 315 (821)
++++|.++.. ..+..++.|+.+++++|.+..+
T Consensus 146 ~l~~N~i~~~----~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 146 NLSGNLISDI----SGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred eeccCcchhc----cCCccchhhhcccCCcchhhhh
Confidence 6666655521 1133355555555555554443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.4e-09 Score=105.78 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=87.1
Q ss_pred CCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCcc-CCCCCC-ccccCCCCcCee
Q 041782 203 QLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ-FQGPVP-SSISELKRLEYL 279 (821)
Q Consensus 203 ~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p-~~l~~l~~L~~L 279 (821)
.|++||||+..|+. .+-.-+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.... --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46667776666653 122334556666666666666666666666666666666666543 221100 113455556666
Q ss_pred ccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC----chhhhhhcCCCccceEe
Q 041782 280 DLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL----KEFLDFLNDQDQLELLD 355 (821)
Q Consensus 280 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l----~~~~~~l~~l~~L~~L~ 355 (821)
+++.|.+.... ........-++|+.|+++++.- ..+..-...+++|.+||
T Consensus 266 NlsWc~l~~~~--------------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 266 NLSWCFLFTEK--------------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred CchHhhccchh--------------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 66655544322 1111112233444444444421 12222234556666666
Q ss_pred cccCC-CCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccC
Q 041782 356 LSANK-IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410 (821)
Q Consensus 356 Ls~n~-l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n 410 (821)
|++|. ++......+..+ +.|++|.++.|..-....-..+...++|.+||+.++
T Consensus 320 LSD~v~l~~~~~~~~~kf--~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKF--NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccccCchHHHHHHhc--chheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 66553 222222233333 556666666554321111112344567777777665
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=4.2e-09 Score=114.20 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=17.0
Q ss_pred ccccCCCCCEEeCCCCCCC
Q 041782 108 SLFHLRHLEWLSLADNNFN 126 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~ 126 (821)
.++.|+.||+|.|.++++.
T Consensus 104 ~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred eeccccceeeEEecCcchh
Confidence 7889999999999999875
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.5e-07 Score=91.89 Aligned_cols=86 Identities=24% Similarity=0.293 Sum_probs=45.8
Q ss_pred CCCCCCEEEccCCcCCC--CcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC-ccccCCCCc
Q 041782 200 NLTQLTYINFDLNQLTG--PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRL 276 (821)
Q Consensus 200 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L 276 (821)
..+.++.+||.+|.|+. .+..-+.++|.|++|+++.|.+...+-..-..+.+|++|-|.+..+...-. ..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35566666666666653 233344566677777777766653332211345566666666665543222 123345555
Q ss_pred CeeccccCC
Q 041782 277 EYLDLHSNN 285 (821)
Q Consensus 277 ~~L~L~~n~ 285 (821)
++|+++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 555555553
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=5e-08 Score=95.28 Aligned_cols=182 Identities=20% Similarity=0.212 Sum_probs=117.1
Q ss_pred CCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCc-CCCC-CccccCCCCCCCE
Q 041782 178 TELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ-LRGY-LPSQIGSLTQLTA 254 (821)
Q Consensus 178 ~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~ 254 (821)
+.|++|||++..++. .+-.-+..+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++.. ..--+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 359999999987753 233346789999999999999999999999999999999999874 4421 1123568999999
Q ss_pred EEccCccCCCCCCcc-ccC-CCCcCeeccccCCce-eecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEE
Q 041782 255 LDLSCNQFQGPVPSS-ISE-LKRLEYLDLHSNNLS-GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFL 331 (821)
Q Consensus 255 L~Ls~n~l~~~~p~~-l~~-l~~L~~L~L~~n~l~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 331 (821)
|+++.|.+....... +.+ -++|+.|+++++.-. +.-.......++++|.+|||++|..-.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~----------------- 327 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK----------------- 327 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-----------------
Confidence 999999876433221 111 257888888887521 000111223455666666666543211
Q ss_pred ecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhcc-CCCCeeEEEcCCC
Q 041782 332 GLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNV-TTGNLQFVNLSYN 385 (821)
Q Consensus 332 ~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~-~~~~L~~L~Ls~n 385 (821)
......+.+++.|++|.++.|.. .+|..+..+ ..++|.+|++.++
T Consensus 328 -------~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 328 -------NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -------chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 22334456667777777777753 344433222 1267777777654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=3.5e-08 Score=107.20 Aligned_cols=176 Identities=27% Similarity=0.285 Sum_probs=105.8
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhccCC-CCCCEEecCCc---------cccccCCccccCCCCCCEEEccCCcCCC
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQ-TELSWLALANI---------NLIGEFPSWLMNLTQLTYINFDLNQLTG 216 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l-~~L~~L~L~~n---------~~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 216 (821)
|..+++||+|.|.++.+... ..+..+ ..|++|.-.+. .-.|.+..++ -...|...++++|.++
T Consensus 105 ifpF~sLr~LElrg~~L~~~-----~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTA-----KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV- 177 (1096)
T ss_pred eccccceeeEEecCcchhhh-----hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence 77888999999999987642 111111 12333322111 0011211111 1235667777788777
Q ss_pred CcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc-cccCCCCcCeeccccCCceeecccccc
Q 041782 217 PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS-SISELKRLEYLDLHSNNLSGNVYIEEL 295 (821)
Q Consensus 217 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 295 (821)
.+..++.-++.|+.|||++|+++.. +.+..+++|++|||++|.+. .+|. ....+. |+.|.+++|.++.. ..
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL----~g 249 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL----RG 249 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh----hh
Confidence 5666777777888888888888754 36777888888888888877 4443 222333 78888888877632 12
Q ss_pred cCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC
Q 041782 296 LPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338 (821)
Q Consensus 296 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l 338 (821)
+.++++|+.||+++|-+.+...-.+ +-.+..|+.|+|.+|.+
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCcc
Confidence 5677788888888887665433221 11245566677777766
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=7.5e-08 Score=83.21 Aligned_cols=81 Identities=33% Similarity=0.513 Sum_probs=39.3
Q ss_pred ccEEEcccccccCccccccc-cCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782 637 LTGIILSNNKLIGKIPTSIS-ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS 715 (821)
Q Consensus 637 L~~L~Ls~N~l~~~~p~~l~-~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 715 (821)
|+.++|++|.+. ..|+.|. ..+.++.|+|++|+++ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|-+||.-
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 444555555554 2333332 2234555555555555 44444555555555555555555 234444445555555555
Q ss_pred cCccc
Q 041782 716 DNNLT 720 (821)
Q Consensus 716 ~N~l~ 720 (821)
+|.+-
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=4.7e-07 Score=88.59 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=29.8
Q ss_pred CcccEEeccCccccccC-chhhcCCCCCCEEeCCCCcCCcC-CchhhCCCCCCCEEEccCCcCc
Q 041782 475 TNLKMIDLSHNLLQGRI-PRSLANCTMLEFLDLGNNQIADI-FPSWLGTLPELKVLMLQFNRFH 536 (821)
Q Consensus 475 ~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~ 536 (821)
+++..+-+..|.+.... -..+..++.+.-|+|+.|+|... .-+.+.++++|..|.+++|++.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 34444445555443221 12333444555555665555433 1234555666666666666554
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=2.7e-07 Score=89.05 Aligned_cols=42 Identities=31% Similarity=0.403 Sum_probs=23.3
Q ss_pred ccCCCCCCCEEEccCccCCCCCCccc----cCCCCcCeeccccCCc
Q 041782 245 QIGSLTQLTALDLSCNQFQGPVPSSI----SELKRLEYLDLHSNNL 286 (821)
Q Consensus 245 ~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~L~~n~l 286 (821)
++.++++|+..+||.|.+....|+.+ ++-+.|++|.+++|.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34566666666666666654444332 3445555555555544
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=2e-05 Score=83.40 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=46.2
Q ss_pred CCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCc
Q 041782 473 NATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLR 552 (821)
Q Consensus 473 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 552 (821)
.+.+++.|++++|.++ .+|. -..+|+.|.+++|.-...+|+.+ .++|+.|++++|.....+ .++|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--------P~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--------PESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc--------ccccc
Confidence 3577888888888776 4551 23468888888765544555544 257788888877322122 34567
Q ss_pred EEEccCCcC
Q 041782 553 IIDLSHNRF 561 (821)
Q Consensus 553 ~L~Ls~N~l 561 (821)
.|+++++..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 777766553
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.1e-05 Score=56.75 Aligned_cols=36 Identities=47% Similarity=0.702 Sum_probs=19.3
Q ss_pred CCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccc
Q 041782 660 GLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696 (821)
Q Consensus 660 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 696 (821)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555556666555 34445555566666666665555
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.82 E-value=1e-06 Score=76.28 Aligned_cols=59 Identities=31% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263 (821)
Q Consensus 203 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 263 (821)
.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.|+..+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 4445555555554 44444555555555555555554 34444545555555555555544
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=1.4e-05 Score=77.51 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=49.6
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCc-hhccCCCCCCEEecCCccc---cccCC-------ccccCCCCCCEEEccCCcCC
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASF-SWIAKQTELSWLALANINL---IGEFP-------SWLMNLTQLTYINFDLNQLT 215 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~---~~~~p-------~~l~~l~~L~~L~Ls~n~l~ 215 (821)
+..+..++.+|||+|.|...-..++ ..+.+-.+|++.++++--. ...++ ..+-+|++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4457778888888887765322110 2344556666666665321 11222 22445666666666666665
Q ss_pred CCcchh----hhcCCCCCEEEccCCcCC
Q 041782 216 GPIPNW----LANLNRLTILSLKSNQLR 239 (821)
Q Consensus 216 ~~~p~~----~~~l~~L~~L~Ls~n~l~ 239 (821)
...|.. ++.-+.|.+|.+++|.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCC
Confidence 444433 334455666666665543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=5.5e-05 Score=53.16 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=15.6
Q ss_pred CCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCC
Q 041782 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLR 239 (821)
Q Consensus 203 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 239 (821)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.63 E-value=2.1e-06 Score=88.19 Aligned_cols=38 Identities=24% Similarity=0.135 Sum_probs=20.7
Q ss_pred CCCCCEEeCCCCcCC-cCCchhhCCCCCCCEEEccCCcC
Q 041782 498 CTMLEFLDLGNNQIA-DIFPSWLGTLPELKVLMLQFNRF 535 (821)
Q Consensus 498 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~N~l 535 (821)
+..|+.+.|+++... +..-+.+..+++|+.+++-+++-
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 455666666666443 22333445566666666666543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.0002 Score=76.06 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=18.0
Q ss_pred CcccEEeccCccccccCchhhcCCCCCCEEeCCCC
Q 041782 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN 509 (821)
Q Consensus 475 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 509 (821)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666644 2333332 46667776655
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=1.7e-05 Score=91.33 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCCCEEEcCCCCCCCCCCCCchhcc-CCCCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782 151 TKLKCLELSQNNFSSPHSASFSWIA-KQTELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL 228 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~l~-~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 228 (821)
.+|++||+++...... .+...++ .+|.|+.|.+++-.+.. ++-....++++|..||+|++.++.. ..++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~--~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN--GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhc--cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 5788888877543311 1113333 37777777777755532 2233345677777777777777643 567777777
Q ss_pred CEEEccCCcCCC-CCccccCCCCCCCEEEccCccCCCCC--C----ccccCCCCcCeeccccCCcee
Q 041782 229 TILSLKSNQLRG-YLPSQIGSLTQLTALDLSCNQFQGPV--P----SSISELKRLEYLDLHSNNLSG 288 (821)
Q Consensus 229 ~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~ 288 (821)
++|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..|++|+.||.+++.+.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 777776655542 22235667777777777765443211 0 011235566666666555543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00013 Score=68.10 Aligned_cols=83 Identities=24% Similarity=0.245 Sum_probs=38.2
Q ss_pred CCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEEC
Q 041782 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL 307 (821)
Q Consensus 228 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L 307 (821)
...+||++|.+... ..|..++.|.+|.+++|.|+.+-|.--.-+++|+.|.+.+|.+...... +-+..+++|++|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence 34445555544321 2344455555555555555543333223344455555555554422111 22445555555555
Q ss_pred CCcccc
Q 041782 308 SANNLS 313 (821)
Q Consensus 308 ~~n~l~ 313 (821)
-+|.++
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555544
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.47 E-value=5.8e-06 Score=85.08 Aligned_cols=261 Identities=16% Similarity=0.084 Sum_probs=133.2
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhc-cCCCCCCEEecCCccc-cccCCc-cccCCCCCCEEEccCCc-CCCC-cchh
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWI-AKQTELSWLALANINL-IGEFPS-WLMNLTQLTYINFDLNQ-LTGP-IPNW 221 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~l~~L~~L~L~~n~~-~~~~p~-~l~~l~~L~~L~Ls~n~-l~~~-~p~~ 221 (821)
-.+++++++|++.++... ....+..+ ..+++|++|++..|.. +...-. -...+++|++|+++.+. +++. +-..
T Consensus 160 ~~~CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred hhhCCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 456778888888777522 11112333 3577888888877533 222222 12357788888888774 3331 1223
Q ss_pred hhcCCCCCEEEccCCcCCCCCcccc----CCCCCCCEEEccCcc-CCCCCCc-cccCCCCcCeeccccCCceeecccccc
Q 041782 222 LANLNRLTILSLKSNQLRGYLPSQI----GSLTQLTALDLSCNQ-FQGPVPS-SISELKRLEYLDLHSNNLSGNVYIEEL 295 (821)
Q Consensus 222 ~~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~-l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 295 (821)
+.++..++.+.+.+|.=.+. +.+ +.+..+..+++.++. +++.--. .-..+..|++|+.+++...+..+....
T Consensus 238 ~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL 315 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL 315 (483)
T ss_pred hccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence 34555566666665431110 111 223345555555543 2221100 113466777777777654443333233
Q ss_pred cCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC---chhhhhhcCCCccceEecccCCCCCCC-Ccchhc
Q 041782 296 LPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL---KEFLDFLNDQDQLELLDLSANKIPGKI-PGWLLN 371 (821)
Q Consensus 296 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~ 371 (821)
-.+..+|+.|-++.++.-+-.....-....+.|+.+++.+|.. .++...-.+++.|+.+.++++...... ...+..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 4466777777777765321111111123566777777777765 223333456677777777776542211 111111
Q ss_pred --cCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCc
Q 041782 372 --VTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNK 411 (821)
Q Consensus 372 --~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 411 (821)
.....+..+.|+++..+....-.....+++|+.+++.+++
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 1114566666666665544333344455666666666554
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=6.6e-05 Score=86.60 Aligned_cols=138 Identities=19% Similarity=0.182 Sum_probs=85.7
Q ss_pred CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG 192 (821)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 192 (821)
.+|++||+++...-...-|..+ =..||+|++|.+++-.+.... ......++++|+.||+|+.++..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~ki------------g~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKI------------GTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred HhhhhcCccccchhhccHHHHH------------hhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccC
Confidence 5778888877544222233332 124677888887776554321 11334567888888888877754
Q ss_pred cCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCC--c----cccCCCCCCCEEEccCccCCCC
Q 041782 193 EFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYL--P----SQIGSLTQLTALDLSCNQFQGP 265 (821)
Q Consensus 193 ~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~Ls~n~l~~~ 265 (821)
. ..++++++|+.|.+.+=.+.. ..-..+.+|++|++||+|........ . +.-..+++|+.||.|++.+.+.
T Consensus 188 l--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 188 L--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred c--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 3 557778888888777666553 22235667888888888876544221 1 1223578899999998877654
Q ss_pred C
Q 041782 266 V 266 (821)
Q Consensus 266 ~ 266 (821)
+
T Consensus 266 ~ 266 (699)
T KOG3665|consen 266 I 266 (699)
T ss_pred H
Confidence 3
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00038 Score=65.04 Aligned_cols=84 Identities=23% Similarity=0.199 Sum_probs=57.2
Q ss_pred CeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEE
Q 041782 327 KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD 406 (821)
Q Consensus 327 ~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 406 (821)
+...+++++|.+..++ .|..++.|..|.+.+|+|+...|.--..+ ++|+.|.|.+|.+..+..-.....++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~--p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFL--PNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhc--cccceEEecCcchhhhhhcchhccCCccceee
Confidence 3444555555554332 25567788888888888886666544444 77888888888887665544556778888888
Q ss_pred eccCccc
Q 041782 407 LRSNKLQ 413 (821)
Q Consensus 407 L~~n~l~ 413 (821)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 8888765
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00047 Score=67.40 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=34.1
Q ss_pred CCCCCCEEEccCC--cCCCCcchhhhcCCCCCEEEccCCcCCCC-CccccCCCCCCCEEEccCccCCCCC---CccccCC
Q 041782 200 NLTQLTYINFDLN--QLTGPIPNWLANLNRLTILSLKSNQLRGY-LPSQIGSLTQLTALDLSCNQFQGPV---PSSISEL 273 (821)
Q Consensus 200 ~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l 273 (821)
.+++|+.|.++.| .+.+.++-....+++|++|++++|++... --..+..+.+|..|++.+|..+..- -..|.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3444444444444 33333333333345555555555544410 0011233444555555555444211 0123445
Q ss_pred CCcCeecc
Q 041782 274 KRLEYLDL 281 (821)
Q Consensus 274 ~~L~~L~L 281 (821)
++|++|+-
T Consensus 143 ~~L~~LD~ 150 (260)
T KOG2739|consen 143 PSLKYLDG 150 (260)
T ss_pred hhhccccc
Confidence 55555543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00059 Score=66.70 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCCCCCCEEEccCc--cCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccce
Q 041782 247 GSLTQLTALDLSCN--QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL 314 (821)
Q Consensus 247 ~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 314 (821)
-.+++|++|.++.| ++.+.++.....+++|++|++++|++...-.. .-+..+++|..|++.+|..+.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccc
Confidence 34445555555555 33333333333445555555555554421111 124445555555555554443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.75 E-value=0.0029 Score=57.11 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=38.5
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN 226 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 226 (821)
+.++++|+.+.+.. .+..... ..+.++++|+.+.+.++ +...-...|.++++|+.+.+.. .+.......|..++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~---~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGE---NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-T---TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC-CeeEeCh---hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 55556666666653 3333333 33444445555555442 2222223344555555555543 22222233444455
Q ss_pred CCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 041782 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSC 259 (821)
Q Consensus 227 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 259 (821)
+|+.+++..+ +.......|.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555555443 332233344444 555555443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.51 E-value=0.0085 Score=54.01 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=62.7
Q ss_pred hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW 518 (821)
Q Consensus 439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 518 (821)
..|.++++|+.+.+.. .+.... ...|.++++|+.+.+.++ +.......|.++++|+.+.+.+ .+.......
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~------~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIG------ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-------TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred HHHhCCCCCCEEEECC-CeeEeC------hhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence 3466778888888874 444332 234667888899988875 6545556788888899999875 555555567
Q ss_pred hCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchh
Q 041782 519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI 576 (821)
Q Consensus 519 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l 576 (821)
|..+++|+.+++..+ +...-...+ ..+ +|+.+.+.. .+. .++...|.++++|
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccccccccCcc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 778889999988765 432222233 344 788888776 333 5666667666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.00012 Score=71.57 Aligned_cols=85 Identities=29% Similarity=0.369 Sum_probs=43.4
Q ss_pred CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC-chhhCCC
Q 041782 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF-PSWLGTL 522 (821)
Q Consensus 444 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l 522 (821)
+.+.+.|+..+|.++++ .....++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|.++- -..+.++
T Consensus 18 l~~vkKLNcwg~~L~DI--------sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--------SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHH--------HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 34455555555555533 1233455566666666665533 23555566666666666555431 1234455
Q ss_pred CCCCEEEccCCcCccc
Q 041782 523 PELKVLMLQFNRFHGE 538 (821)
Q Consensus 523 ~~L~~L~L~~N~l~~~ 538 (821)
|+|+.|-|..|.-.|.
T Consensus 88 psLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGE 103 (388)
T ss_pred chhhhHhhccCCcccc
Confidence 5555555555554443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.00021 Score=69.78 Aligned_cols=87 Identities=25% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCe
Q 041782 225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIV 304 (821)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~ 304 (821)
+.+.+.|+..+|.++++ .-..+++.|++|.|+-|+|+.. ..+..+++|++|+|..|.|...-.. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhh
Confidence 34556666666666643 3344667777777777777643 2356777777777777776643222 45667777777
Q ss_pred EECCCcccceec
Q 041782 305 LFLSANNLSLIT 316 (821)
Q Consensus 305 L~L~~n~l~~~~ 316 (821)
|.|..|.-.+..
T Consensus 93 LWL~ENPCc~~a 104 (388)
T KOG2123|consen 93 LWLDENPCCGEA 104 (388)
T ss_pred HhhccCCccccc
Confidence 777777655443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0046 Score=36.05 Aligned_cols=11 Identities=64% Similarity=0.899 Sum_probs=4.4
Q ss_pred CEEeCCCcccC
Q 041782 662 NCLNLSGNNLL 672 (821)
Q Consensus 662 ~~L~Ls~N~l~ 672 (821)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.34 E-value=0.0026 Score=72.21 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=9.0
Q ss_pred hcCCCccceEecccCC
Q 041782 345 LNDQDQLELLDLSANK 360 (821)
Q Consensus 345 l~~l~~L~~L~Ls~n~ 360 (821)
...+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3455566666665555
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0066 Score=35.39 Aligned_cols=21 Identities=52% Similarity=0.757 Sum_probs=12.4
Q ss_pred CCCeEeCCCCcccccCCCCccc
Q 041782 684 VLESLDLSNNNLSGEIPRQLAE 705 (821)
Q Consensus 684 ~L~~L~Ls~N~l~~~~p~~l~~ 705 (821)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55555543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.01 E-value=0.0028 Score=72.00 Aligned_cols=110 Identities=20% Similarity=0.140 Sum_probs=47.1
Q ss_pred CCCCCEEEccCCcCCCC--cchhhhcCCCCCEEEccCC-cCCCCCc----cccCCCCCCCEEEccCcc-CCCCCCcccc-
Q 041782 201 LTQLTYINFDLNQLTGP--IPNWLANLNRLTILSLKSN-QLRGYLP----SQIGSLTQLTALDLSCNQ-FQGPVPSSIS- 271 (821)
Q Consensus 201 l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~- 271 (821)
++.|+.|.+.++.-... .-.....+++|+.|+++++ ......+ .....+++|+.|+++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555532211 2233344556666666542 1111111 122234555566665554 3332222222
Q ss_pred CCCCcCeeccccCC-ceeecccccccCCCCCCCeEECCCcc
Q 041782 272 ELKRLEYLDLHSNN-LSGNVYIEELLPKLKSLIVLFLSANN 311 (821)
Q Consensus 272 ~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~ 311 (821)
.+++|++|.+.+|. +++.... .....++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~-~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLV-SIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHH-HHHHhcCcccEEeeecCc
Confidence 24556665555554 3321111 223445555555555443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.03 E-value=0.00063 Score=75.22 Aligned_cols=61 Identities=34% Similarity=0.406 Sum_probs=36.7
Q ss_pred ccEEEcccccccCc----cccccccC-CCCCEEeCCCcccCcc----hhhhhcCccCCCeEeCCCCcccc
Q 041782 637 LTGIILSNNKLIGK----IPTSISEL-KGLNCLNLSGNNLLGH----IPSSLGNLTVLESLDLSNNNLSG 697 (821)
Q Consensus 637 L~~L~Ls~N~l~~~----~p~~l~~L-~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~ 697 (821)
+..+++.+|.+.+. ....+..+ ..+++++++.|.++.. +...+.....+++|.+++|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 34467777766533 22334444 5667777777777653 33445566677777777777654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.12 E-value=0.00075 Score=74.65 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=20.3
Q ss_pred CCCEEEcCCCCCCCCCCCCc-hhccCCCCCCEEecCCcccc
Q 041782 152 KLKCLELSQNNFSSPHSASF-SWIAKQTELSWLALANINLI 191 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~~ 191 (821)
.+.+|.|.+|.+.......+ ..+.....|..|++++|.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 36677777777665432110 12334455555555555554
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.93 E-value=0.13 Score=27.70 Aligned_cols=11 Identities=55% Similarity=0.748 Sum_probs=3.3
Q ss_pred CCEEeCCCccc
Q 041782 661 LNCLNLSGNNL 671 (821)
Q Consensus 661 L~~L~Ls~N~l 671 (821)
|++|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.61 E-value=0.016 Score=55.60 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=71.6
Q ss_pred cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782 636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS 715 (821)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 715 (821)
..+.||++.|++. ..-..|.-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 3678999999987 45566778888999999999998 78888999999999999999988 689999999999999999
Q ss_pred cCccc
Q 041782 716 DNNLT 720 (821)
Q Consensus 716 ~N~l~ 720 (821)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99865
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.37 E-value=0.013 Score=56.13 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=52.0
Q ss_pred ccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcC
Q 041782 198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLE 277 (821)
Q Consensus 198 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 277 (821)
+......+.||++.|++. ..-..|..++.|..|+++.|.+. ..|.+++.+..++.+++..|..+ ..|.++++.+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 334455556666666554 23334555556666666666665 45666666666666666666655 5566666666666
Q ss_pred eeccccCCce
Q 041782 278 YLDLHSNNLS 287 (821)
Q Consensus 278 ~L~L~~n~l~ 287 (821)
++++-.|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666666543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.67 E-value=0.53 Score=28.54 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=7.0
Q ss_pred CCCCEEeCCCcccC
Q 041782 659 KGLNCLNLSGNNLL 672 (821)
Q Consensus 659 ~~L~~L~Ls~N~l~ 672 (821)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.67 E-value=0.53 Score=28.54 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=7.0
Q ss_pred CCCCEEeCCCcccC
Q 041782 659 KGLNCLNLSGNNLL 672 (821)
Q Consensus 659 ~~L~~L~Ls~N~l~ 672 (821)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.06 E-value=0.4 Score=29.10 Aligned_cols=17 Identities=59% Similarity=0.657 Sum_probs=10.2
Q ss_pred ccCCCeEeCCCCccccc
Q 041782 682 LTVLESLDLSNNNLSGE 698 (821)
Q Consensus 682 l~~L~~L~Ls~N~l~~~ 698 (821)
+++|++|+|++|+|...
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 34566666666666643
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.06 E-value=0.4 Score=29.10 Aligned_cols=17 Identities=59% Similarity=0.657 Sum_probs=10.2
Q ss_pred ccCCCeEeCCCCccccc
Q 041782 682 LTVLESLDLSNNNLSGE 698 (821)
Q Consensus 682 l~~L~~L~Ls~N~l~~~ 698 (821)
+++|++|+|++|+|...
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 34566666666666643
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.98 E-value=0.31 Score=28.95 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=7.8
Q ss_pred CCCCEEeCCCcccCcchh
Q 041782 659 KGLNCLNLSGNNLLGHIP 676 (821)
Q Consensus 659 ~~L~~L~Ls~N~l~~~ip 676 (821)
++|++|+|++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 345555555555544433
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.93 E-value=0.29 Score=46.45 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=34.6
Q ss_pred CCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhc
Q 041782 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVAN 580 (821)
Q Consensus 501 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~ 580 (821)
++.+|-++..|..+.-+.+..+++++.|.+.+|+-.+...........++|+.|+|++|.=..+---.++..+++|+.+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 33344444444433333344444444444444433221111111123456666666666421111112333444555555
Q ss_pred cccchh
Q 041782 581 KSQLKY 586 (821)
Q Consensus 581 ~~~~~~ 586 (821)
+..+++
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 444443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.38 E-value=0.2 Score=47.51 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=38.9
Q ss_pred CcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCc-hhh-cCCCCCCEEeCCCC-cCCcCCchhhCCCC
Q 041782 447 LRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIP-RSL-ANCTMLEFLDLGNN-QIADIFPSWLGTLP 523 (821)
Q Consensus 447 L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~-~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 523 (821)
++.+|-++..|..+ ..+.+.+++.++.|.+.+|+--+..- +.+ +-.++|+.|+|++| +|++..-.++..++
T Consensus 103 IeaVDAsds~I~~e------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred EEEEecCCchHHHH------HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 45555555555443 22233445555555555554221100 001 12356666666665 45555555556666
Q ss_pred CCCEEEccC
Q 041782 524 ELKVLMLQF 532 (821)
Q Consensus 524 ~L~~L~L~~ 532 (821)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 666665543
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=81.66 E-value=5.8 Score=42.81 Aligned_cols=63 Identities=21% Similarity=0.057 Sum_probs=33.2
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcccccc---CCccccCCCCCCEEEccCCcC
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGE---FPSWLMNLTQLTYINFDLNQL 214 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~---~p~~l~~l~~L~~L~Ls~n~l 214 (821)
.+.+++|+.|.....+|........-..+++++.+...+.-. -+-..+.-++|++.+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 456677777766666663333333444556666655443211 122234455666666666644
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.82 E-value=8.4 Score=41.63 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=11.1
Q ss_pred CCeeEEEcCCCCCCCCCC
Q 041782 375 GNLQFVNLSYNLITGFDR 392 (821)
Q Consensus 375 ~~L~~L~Ls~n~l~~~~~ 392 (821)
..+++|....|.+.+...
T Consensus 354 ~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred eeeeEeeccccccccccc
Confidence 346777777776665543
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.57 E-value=3.9 Score=24.88 Aligned_cols=14 Identities=57% Similarity=0.743 Sum_probs=7.8
Q ss_pred cCCCeEeCCCCccc
Q 041782 683 TVLESLDLSNNNLS 696 (821)
Q Consensus 683 ~~L~~L~Ls~N~l~ 696 (821)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.40 E-value=3.7 Score=24.92 Aligned_cols=13 Identities=46% Similarity=0.554 Sum_probs=6.4
Q ss_pred CCCEEeCCCcccC
Q 041782 660 GLNCLNLSGNNLL 672 (821)
Q Consensus 660 ~L~~L~Ls~N~l~ 672 (821)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555544
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.89 E-value=8.7 Score=23.76 Aligned_cols=14 Identities=43% Similarity=0.432 Sum_probs=9.1
Q ss_pred CCCCEEeCCCcccC
Q 041782 659 KGLNCLNLSGNNLL 672 (821)
Q Consensus 659 ~~L~~L~Ls~N~l~ 672 (821)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777777665
No 91
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=52.00 E-value=10 Score=26.33 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=26.2
Q ss_pred CcchHHHHHHHHHHHHHHhhccccCCCCCCCC--HHHHHHHHHHHhcCC
Q 041782 1 MGLSFCFLTAFSLLLFHITNAHLASPLHQLCH--AGERSALLQFKESLT 47 (821)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~k~~~~ 47 (821)
|+.+|-|.+++.++..+-..- +...|. .+||.|||+-++.+.
T Consensus 1 mfiawywivli~lv~~gy~~h-----mkrycrafrqdrdallear~kl~ 44 (54)
T PF13260_consen 1 MFIAWYWIVLIVLVVVGYFCH-----MKRYCRAFRQDRDALLEARNKLF 44 (54)
T ss_pred ChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHH
Confidence 777877777666655543210 112233 469999999988764
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.22 E-value=16 Score=48.63 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=22.0
Q ss_pred eCCCcccCcchhhhhcCccCCCeEeCCCCcccc
Q 041782 665 NLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG 697 (821)
Q Consensus 665 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 697 (821)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 466777776666666667777777777766653
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.13 E-value=14 Score=40.88 Aligned_cols=14 Identities=36% Similarity=0.292 Sum_probs=7.4
Q ss_pred ccceEecccCCCCC
Q 041782 350 QLELLDLSANKIPG 363 (821)
Q Consensus 350 ~L~~L~Ls~n~l~~ 363 (821)
.|++|-+.+|.+..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 35555555555543
No 94
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=31.84 E-value=28 Score=38.02 Aligned_cols=23 Identities=22% Similarity=0.071 Sum_probs=17.3
Q ss_pred EEEeehhhhhhHHHHHHHHHhhh
Q 041782 775 IVLTGYASGLIVGVVIGQTFTTR 797 (821)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~ 797 (821)
++++++++.+|||.+|+|+.|||
T Consensus 369 IaGIsvavvvvVgglvGfLcWwf 391 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFLCWWF 391 (397)
T ss_pred eeeeeehhHHHHHHHHHHHhhhe
Confidence 45666777778888899999754
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.27 E-value=41 Score=37.45 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=7.6
Q ss_pred CccEEEeccCcccC
Q 041782 401 DLVTLDLRSNKLQG 414 (821)
Q Consensus 401 ~L~~L~L~~n~l~~ 414 (821)
.|++|-+.+|++..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 45555556655543
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.42 E-value=49 Score=19.82 Aligned_cols=12 Identities=33% Similarity=0.282 Sum_probs=7.0
Q ss_pred CCCCEEeCCCCc
Q 041782 499 TMLEFLDLGNNQ 510 (821)
Q Consensus 499 ~~L~~L~L~~n~ 510 (821)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666653
No 97
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.77 E-value=72 Score=29.09 Aligned_cols=8 Identities=38% Similarity=0.983 Sum_probs=3.7
Q ss_pred HHHHhhcc
Q 041782 801 WFAKTLGM 808 (821)
Q Consensus 801 ~~~~~~~~ 808 (821)
|++.++++
T Consensus 101 ~w~~l~Gk 108 (154)
T PF04478_consen 101 WWYSLLGK 108 (154)
T ss_pred HHHHHhCC
Confidence 44444443
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=25.54 E-value=43 Score=28.10 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=8.2
Q ss_pred EeehhhhhhHHHHHHHHH
Q 041782 777 LTGYASGLIVGVVIGQTF 794 (821)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~ 794 (821)
++++++.+++++++++++
T Consensus 70 gi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 70 GISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEEeehhhHHHHHHHHHh
Confidence 333433444445555554
No 99
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=25.30 E-value=73 Score=27.09 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHhhhhHHH-HHHhhcceeecccc
Q 041782 782 SGLIVGVVIGQTFTTRINAW-FAKTLGMRVQGRRR 815 (821)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~ 815 (821)
.|+|+|-.|+.+++....-| |.+.+++|+++.-|
T Consensus 92 LGvV~GG~i~vLcylylPC~~~l~v~~cW~k~wG~ 126 (127)
T PF06040_consen 92 LGVVAGGLIAVLCYLYLPCWVELVVLICWFKKWGR 126 (127)
T ss_pred HHHHhccHHHHHHHHhccHHHhhhhheeeeecccC
Confidence 35555544444433223334 77888899987654
No 100
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.41 E-value=71 Score=26.77 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=7.5
Q ss_pred Ccch-HHHHHHHHHHHHH
Q 041782 1 MGLS-FCFLTAFSLLLFH 17 (821)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~ 17 (821)
|+.. |+++.+++++++.
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 7733 4444444333333
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.78 E-value=52 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.293 Sum_probs=28.8
Q ss_pred EcccccccCccccccccCCCCCEEeCCCcccC
Q 041782 641 ILSNNKLIGKIPTSISELKGLNCLNLSGNNLL 672 (821)
Q Consensus 641 ~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 672 (821)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778999999999999999886
Done!