Query 041782
Match_columns 821
No_of_seqs 938 out of 5984
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.3E-84 1.8E-88 771.0 45.6 682 31-755 9-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 9.3E-64 3.2E-68 596.4 37.2 601 88-721 101-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.2E-57 2.8E-61 532.0 44.1 579 87-725 25-627 (680)
4 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-56 3.2E-60 532.8 36.1 559 75-757 14-593 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-53 3.9E-58 505.1 43.4 544 87-700 49-626 (680)
6 3t6q_A CD180 antigen; protein- 100.0 6.8E-53 2.3E-57 491.7 44.2 516 113-725 33-565 (606)
7 4eco_A Uncharacterized protein 100.0 2.6E-55 8.9E-60 511.5 20.8 522 30-721 26-601 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-52 4.1E-57 489.6 40.3 513 113-725 32-563 (606)
9 3t6q_A CD180 antigen; protein- 100.0 1.6E-51 5.6E-56 480.1 41.1 526 77-700 14-564 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 1.5E-52 5E-57 495.0 30.3 260 28-313 263-586 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-51 3.8E-56 497.4 35.6 523 111-748 22-565 (844)
12 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-50 1.7E-54 467.7 39.3 531 154-748 14-563 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 4E-47 1.4E-51 440.0 41.1 492 152-727 29-538 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-48 5.7E-53 449.2 27.9 501 74-726 3-516 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 4.5E-46 1.6E-50 431.1 34.1 498 88-701 29-536 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-45 1.1E-49 421.8 31.4 469 87-700 26-514 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-45 3.7E-50 422.5 21.5 444 151-725 21-486 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-43 1.7E-47 411.2 40.7 516 113-724 52-584 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-44 1.3E-48 409.7 26.7 453 90-700 3-485 (520)
20 4eco_A Uncharacterized protein 100.0 4.7E-45 1.6E-49 425.0 15.4 461 113-745 81-602 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 6.1E-43 2.1E-47 413.1 29.3 367 212-722 435-842 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 2E-41 6.8E-46 397.7 37.5 510 87-698 52-582 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-42 8.1E-47 398.1 26.4 471 90-726 34-516 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-41 1.3E-45 388.0 30.4 443 87-700 52-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 6.2E-41 2.1E-45 355.4 17.9 248 30-313 2-257 (313)
26 1jl5_A Outer protein YOPM; leu 100.0 2.8E-40 9.5E-45 367.8 22.0 404 150-726 10-417 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 5.2E-39 1.8E-43 360.8 29.9 385 202-729 30-417 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 2.2E-39 7.5E-44 360.6 22.4 425 108-726 6-435 (454)
29 3v47_A TOLL-like receptor 5B a 100.0 2.1E-37 7E-42 347.8 33.5 368 113-567 30-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 8.1E-37 2.8E-41 340.2 26.9 360 108-573 37-398 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-36 4E-41 338.9 24.5 358 196-726 36-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 3E-34 1E-38 322.3 33.1 119 177-307 45-163 (466)
33 1o6v_A Internalin A; bacterial 100.0 1.2E-33 4.1E-38 317.4 33.9 347 110-563 43-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 2.3E-34 8E-39 324.7 25.1 327 327-747 33-360 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 4.7E-34 1.6E-38 313.3 25.5 352 61-514 2-354 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 5.8E-33 2E-37 313.4 28.0 301 152-536 33-333 (477)
37 1ogq_A PGIP-2, polygalacturona 100.0 8E-34 2.7E-38 300.7 19.0 258 422-752 51-312 (313)
38 3oja_B Anopheles plasmodium-re 100.0 5.4E-33 1.9E-37 321.7 27.0 349 61-514 8-360 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 2.5E-32 8.5E-37 299.6 25.0 318 149-570 43-360 (390)
40 3oja_B Anopheles plasmodium-re 100.0 8.1E-32 2.8E-36 311.8 25.2 319 149-571 49-367 (597)
41 4fcg_A Uncharacterized protein 100.0 1.1E-32 3.7E-37 293.8 15.7 231 29-291 22-270 (328)
42 4fmz_A Internalin; leucine ric 100.0 7.6E-31 2.6E-35 283.1 29.5 307 147-562 40-346 (347)
43 4fmz_A Internalin; leucine ric 100.0 3.5E-30 1.2E-34 277.9 30.1 308 108-536 39-346 (347)
44 1z7x_W Ribonuclease inhibitor; 100.0 6.8E-34 2.3E-38 319.8 -8.3 98 438-536 220-326 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-29 1.3E-33 267.8 27.7 230 178-464 54-283 (332)
46 1xku_A Decorin; proteoglycan, 100.0 5.7E-29 2E-33 266.2 28.2 296 152-533 32-329 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-32 5.1E-37 308.8 -6.1 369 87-513 3-412 (461)
48 1xku_A Decorin; proteoglycan, 100.0 5.6E-28 1.9E-32 258.5 28.0 293 179-560 32-330 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-28 9.1E-33 261.1 22.6 266 203-536 34-307 (332)
50 3ogk_B Coronatine-insensitive 99.9 1.9E-29 6.6E-34 293.0 3.1 83 635-717 463-548 (592)
51 2z80_A TOLL-like receptor 2, v 99.9 1.5E-27 5E-32 257.7 15.0 282 71-390 26-316 (353)
52 2z66_A Variable lymphocyte rec 99.9 1.2E-26 4.1E-31 245.3 19.4 233 421-724 28-265 (306)
53 3ogk_B Coronatine-insensitive 99.9 1.8E-28 6E-33 284.8 3.2 419 195-722 66-528 (592)
54 3zyi_A Leucine-rich repeat-con 99.9 8.2E-26 2.8E-30 252.5 24.3 251 403-724 57-307 (452)
55 4fcg_A Uncharacterized protein 99.9 2.2E-26 7.6E-31 244.9 18.1 225 400-720 81-314 (328)
56 1wwl_A Monocyte differentiatio 99.9 1.1E-27 3.8E-32 253.6 7.8 251 398-721 41-310 (312)
57 2z80_A TOLL-like receptor 2, v 99.9 3.7E-26 1.3E-30 246.7 19.7 106 179-284 53-159 (353)
58 3zyj_A Leucine-rich repeat-con 99.9 1E-25 3.6E-30 250.8 23.1 250 404-724 47-296 (440)
59 1ozn_A Reticulon 4 receptor; N 99.9 8.5E-26 2.9E-30 236.1 19.6 218 437-725 48-266 (285)
60 1wwl_A Monocyte differentiatio 99.9 2.4E-28 8.2E-33 258.7 0.1 206 176-390 93-311 (312)
61 3zyi_A Leucine-rich repeat-con 99.9 2.3E-25 8E-30 248.9 23.3 251 424-748 57-308 (452)
62 2z66_A Variable lymphocyte rec 99.9 1.1E-25 3.6E-30 238.1 19.4 253 74-389 6-262 (306)
63 3zyj_A Leucine-rich repeat-con 99.9 2.4E-25 8.2E-30 247.9 22.8 251 424-748 46-297 (440)
64 1ozn_A Reticulon 4 receptor; N 99.9 6.5E-26 2.2E-30 237.0 15.1 212 444-725 31-243 (285)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-26 5.4E-31 245.3 9.4 266 327-724 11-280 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-24 5.6E-29 247.9 26.4 79 637-724 223-301 (622)
67 2o6q_A Variable lymphocyte rec 99.9 3.6E-24 1.2E-28 221.6 22.2 218 72-314 2-219 (270)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-26 8.7E-31 243.7 5.6 152 349-533 120-272 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-23 4.9E-28 240.1 27.9 268 151-522 40-307 (622)
70 2p1m_B Transport inhibitor res 99.9 5.4E-27 1.8E-31 272.5 -3.8 443 147-720 62-544 (594)
71 3oja_A Leucine-rich immune mol 99.9 6.7E-25 2.3E-29 246.4 12.7 148 349-536 34-182 (487)
72 2p1m_B Transport inhibitor res 99.9 8.1E-27 2.8E-31 271.0 -5.5 415 197-721 61-520 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 3.3E-23 1.1E-27 215.3 20.1 212 445-727 28-244 (276)
74 3oja_A Leucine-rich immune mol 99.9 2.6E-24 9E-29 241.5 11.1 218 150-388 33-250 (487)
75 2o6q_A Variable lymphocyte rec 99.9 2.1E-22 7.2E-27 208.3 22.1 207 446-725 17-223 (270)
76 3rfs_A Internalin B, repeat mo 99.9 7.5E-23 2.6E-27 211.8 15.2 206 440-726 36-241 (272)
77 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.6E-27 210.7 16.0 210 108-372 36-245 (272)
78 2z62_A TOLL-like receptor 4, v 99.9 6.8E-22 2.3E-26 205.4 21.4 206 152-365 29-240 (276)
79 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.7E-27 215.1 14.8 210 444-721 90-308 (310)
80 1p9a_G Platelet glycoprotein I 99.9 5.6E-22 1.9E-26 206.9 19.8 206 441-723 6-211 (290)
81 1p9a_G Platelet glycoprotein I 99.9 6.7E-22 2.3E-26 206.2 18.6 206 471-747 6-212 (290)
82 3m19_A Variable lymphocyte rec 99.9 8.6E-22 2.9E-26 201.3 18.9 190 73-287 3-192 (251)
83 3m19_A Variable lymphocyte rec 99.9 1.2E-21 3.9E-26 200.4 15.7 211 477-755 16-232 (251)
84 3goz_A Leucine-rich repeat-con 99.9 6.7E-23 2.3E-27 221.7 6.7 76 439-516 218-301 (362)
85 2ast_B S-phase kinase-associat 99.9 5.1E-23 1.7E-27 220.7 3.6 213 72-311 34-258 (336)
86 3goz_A Leucine-rich repeat-con 99.9 1.5E-22 5.2E-27 218.9 6.6 119 446-568 168-303 (362)
87 2ca6_A RAN GTPase-activating p 99.9 3.3E-23 1.1E-27 226.5 -0.6 88 636-723 217-319 (386)
88 4glp_A Monocyte differentiatio 99.8 1.3E-21 4.4E-26 206.8 10.3 234 151-414 64-308 (310)
89 1h6u_A Internalin H; cell adhe 99.8 4.2E-20 1.4E-24 194.7 18.2 195 441-721 37-231 (308)
90 2ca6_A RAN GTPase-activating p 99.8 2.3E-22 8E-27 219.7 0.8 95 193-287 23-135 (386)
91 2xwt_C Thyrotropin receptor; s 99.8 8.8E-21 3E-25 192.3 11.9 86 446-537 32-119 (239)
92 2xwt_C Thyrotropin receptor; s 99.8 2.6E-20 8.9E-25 188.8 14.5 196 152-385 32-236 (239)
93 2ast_B S-phase kinase-associat 99.8 3E-21 1E-25 206.8 6.5 204 178-410 70-282 (336)
94 1h6u_A Internalin H; cell adhe 99.8 1.9E-19 6.6E-24 189.6 17.9 195 108-362 36-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.8E-24 193.9 16.7 241 404-718 13-257 (350)
96 3cvr_A Invasion plasmid antige 99.8 1.6E-19 5.4E-24 204.0 15.7 182 446-725 60-248 (571)
97 2o6s_A Variable lymphocyte rec 99.8 3.7E-19 1.2E-23 176.2 14.8 186 73-301 5-190 (208)
98 2o6s_A Variable lymphocyte rec 99.8 9.9E-19 3.4E-23 173.0 17.3 130 426-563 33-162 (208)
99 3cvr_A Invasion plasmid antige 99.8 2.6E-19 9E-24 202.2 13.5 203 61-317 32-247 (571)
100 4ay9_X Follicle-stimulating ho 99.8 5.6E-18 1.9E-22 182.0 19.5 102 446-560 155-257 (350)
101 3e6j_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 169.8 17.6 158 71-263 15-172 (229)
102 1h6t_A Internalin B; cell adhe 99.8 7.8E-18 2.7E-22 175.6 16.8 176 108-316 41-216 (291)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-17 4.5E-22 166.1 16.7 138 152-291 33-170 (220)
104 2v9t_B SLIT homolog 2 protein 99.7 1.5E-17 5E-22 165.8 16.5 134 151-287 32-165 (220)
105 2xot_A Amphoterin-induced prot 99.7 7.8E-18 2.7E-22 181.6 12.7 176 448-696 21-202 (361)
106 4b8c_D Glucose-repressible alc 99.7 5.7E-19 2E-23 207.2 3.0 240 30-310 128-369 (727)
107 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.9E-22 163.0 12.4 154 109-287 40-194 (197)
108 1h6t_A Internalin B; cell adhe 99.7 3.6E-17 1.2E-21 170.5 15.9 173 147-363 42-214 (291)
109 1m9s_A Internalin B; cell inva 99.7 2.7E-17 9.1E-22 188.1 16.1 190 91-317 25-214 (605)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 6.7E-17 2.3E-21 161.0 16.2 141 423-571 34-175 (220)
111 2xot_A Amphoterin-induced prot 99.7 2.4E-17 8.2E-22 177.8 13.9 135 149-286 62-201 (361)
112 3e6j_A Variable lymphocyte rec 99.7 5.5E-17 1.9E-21 162.8 15.5 87 637-724 90-176 (229)
113 2v9t_B SLIT homolog 2 protein 99.7 1.8E-16 6.1E-21 157.9 16.2 142 421-570 32-173 (220)
114 1m9s_A Internalin B; cell inva 99.7 7.6E-17 2.6E-21 184.3 14.9 174 441-698 39-212 (605)
115 1w8a_A SLIT protein; signaling 99.7 2.8E-17 9.5E-22 160.0 8.0 113 635-747 54-166 (192)
116 4ezg_A Putative uncharacterize 99.7 9.9E-17 3.4E-21 156.9 12.0 155 147-314 40-195 (197)
117 1xeu_A Internalin C; cellular 99.7 9E-17 3.1E-21 164.8 10.4 170 474-722 18-187 (263)
118 1dce_A Protein (RAB geranylger 99.7 3.1E-18 1.1E-22 194.7 -3.7 88 636-726 464-552 (567)
119 1xeu_A Internalin C; cellular 99.6 7.4E-16 2.5E-20 158.0 13.5 149 109-287 37-185 (263)
120 1dce_A Protein (RAB geranylger 99.6 5.7E-18 2E-22 192.5 -3.3 199 109-333 345-567 (567)
121 4b8c_D Glucose-repressible alc 99.6 1.7E-16 5.7E-21 186.3 8.7 182 436-696 215-404 (727)
122 1w8a_A SLIT protein; signaling 99.6 3.1E-15 1.1E-19 145.4 13.8 111 152-264 30-140 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 2.8E-15 9.7E-20 142.5 12.1 133 150-287 23-160 (168)
124 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 143.2 11.1 139 111-268 22-164 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.1E-20 140.2 9.3 127 151-282 17-148 (149)
126 2je0_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 139.0 9.3 131 111-259 15-149 (149)
127 3sb4_A Hypothetical leucine ri 99.5 4.9E-15 1.7E-19 157.6 8.5 82 440-529 245-327 (329)
128 2wfh_A SLIT homolog 2 protein 99.5 4.6E-14 1.6E-18 137.1 14.5 127 154-287 13-139 (193)
129 2o6r_A Variable lymphocyte rec 99.5 7.9E-14 2.7E-18 133.7 14.7 110 179-288 29-138 (177)
130 2o6r_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 132.8 15.1 112 152-266 29-140 (177)
131 2wfh_A SLIT homolog 2 protein 99.5 1.1E-13 3.6E-18 134.5 15.0 108 152-263 32-139 (193)
132 3sb4_A Hypothetical leucine ri 99.5 2.6E-14 9.1E-19 151.9 9.1 86 634-721 225-311 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.5 6.1E-14 2.1E-18 134.3 9.6 132 147-287 15-153 (176)
134 3g39_A Variable lymphocyte rec 99.4 1.8E-13 6.3E-18 129.9 10.0 90 636-725 31-120 (170)
135 1a9n_A U2A', U2A'; complex (nu 99.4 2.3E-13 7.8E-18 130.3 9.3 133 108-263 14-153 (176)
136 1ds9_A Outer arm dynein; leuci 99.4 5.5E-15 1.9E-19 144.6 -2.1 81 636-720 94-185 (198)
137 2r9u_A Variable lymphocyte rec 99.4 6E-13 2E-17 126.7 10.1 89 636-724 34-122 (174)
138 1ds9_A Outer arm dynein; leuci 99.4 2.4E-15 8.1E-20 147.2 -6.9 151 151-306 18-180 (198)
139 3g39_A Variable lymphocyte rec 99.3 4.6E-12 1.6E-16 120.1 11.9 86 202-287 30-115 (170)
140 4fdw_A Leucine rich hypothetic 99.3 3.3E-11 1.1E-15 130.7 20.1 85 471-560 296-381 (401)
141 2r9u_A Variable lymphocyte rec 99.3 6.9E-12 2.4E-16 119.3 12.0 104 154-263 15-118 (174)
142 4fs7_A Uncharacterized protein 99.3 1.3E-10 4.4E-15 126.7 22.4 60 471-532 316-375 (394)
143 4fdw_A Leucine rich hypothetic 99.3 7.3E-11 2.5E-15 128.0 18.7 109 440-561 175-283 (401)
144 4fs7_A Uncharacterized protein 99.3 2.1E-10 7.3E-15 124.9 21.4 312 172-559 65-376 (394)
145 3un9_A NLR family member X1; l 99.2 3.6E-13 1.2E-17 144.8 -4.5 113 202-314 126-253 (372)
146 3un9_A NLR family member X1; l 99.2 4.4E-13 1.5E-17 144.1 -4.4 148 202-370 101-260 (372)
147 2ifg_A High affinity nerve gro 99.2 5E-11 1.7E-15 127.7 9.4 85 636-721 32-117 (347)
148 2ifg_A High affinity nerve gro 99.1 2.9E-10 1E-14 121.6 10.6 92 194-287 24-116 (347)
149 4gt6_A Cell surface protein; l 99.1 1.2E-08 3.9E-13 111.1 23.3 107 440-560 283-389 (394)
150 4gt6_A Cell surface protein; l 98.9 9E-08 3.1E-12 104.0 23.7 86 439-535 305-390 (394)
151 3rw6_A Nuclear RNA export fact 98.8 1.6E-10 5.4E-15 116.4 -5.1 80 199-280 167-257 (267)
152 2ra8_A Uncharacterized protein 98.8 9.5E-09 3.2E-13 109.2 8.0 81 636-718 253-341 (362)
153 2ra8_A Uncharacterized protein 98.7 3.3E-09 1.1E-13 112.8 3.4 89 440-531 134-227 (362)
154 4h09_A Hypothetical leucine ri 98.6 2.9E-06 1E-10 91.5 23.1 87 439-533 257-343 (379)
155 4h09_A Hypothetical leucine ri 98.5 9.4E-06 3.2E-10 87.5 21.3 122 439-573 234-355 (379)
156 1io0_A Tropomodulin; LRR prote 98.4 6.7E-08 2.3E-12 92.5 1.7 66 198-263 61-136 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 8.5E-08 2.9E-12 91.8 0.8 119 195-313 29-164 (185)
158 3rw6_A Nuclear RNA export fact 98.3 3.2E-07 1.1E-11 92.2 3.6 84 640-725 148-238 (267)
159 3e4g_A ATP synthase subunit S, 97.9 2.6E-06 8.8E-11 79.2 1.4 82 203-284 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.9 4.1E-06 1.4E-10 77.9 2.7 83 636-718 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00026 8.7E-09 67.1 2.2 64 197-260 65-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00036 1.2E-08 66.1 1.2 114 198-311 37-168 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0016 5.6E-08 57.5 5.4 38 684-721 32-69 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0029 9.8E-08 55.9 6.0 58 638-697 11-69 (130)
165 2lz0_A Uncharacterized protein 33.4 36 0.0012 27.6 3.7 39 493-532 14-52 (100)
166 2lz0_A Uncharacterized protein 27.7 61 0.0021 26.2 4.2 36 221-257 15-50 (100)
167 3ox7_P MH027; urokinase-type p 27.4 21 0.00072 19.1 0.8 11 71-81 4-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-84 Score=770.98 Aligned_cols=682 Identities=30% Similarity=0.421 Sum_probs=505.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccccceeeCCCCCCEEEEEcCCCCCccc---ccCCc
Q 041782 31 CHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGS---INSSS 107 (821)
Q Consensus 31 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~---~~~~~ 107 (821)
+.++||+|||+||+++.++. .+++|+. +++||+|+||+|+ .+||++|+|++.++.|. +++
T Consensus 9 ~~~~~~~all~~k~~~~~~~----------~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~-- 71 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN----------LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS-- 71 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT----------SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--
T ss_pred CCHHHHHHHHHHHhhCCCcc----------cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--
Confidence 46789999999999997542 5899985 6899999999998 58999999999999998 765
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccccC----------CCcccCCC---CCCCCCCCEEEcCCCCCCCCCCCCchhc
Q 041782 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLS----------SFSGQVPS---LGNLTKLKCLELSQNNFSSPHSASFSWI 174 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~----------~~~~~ip~---l~~l~~L~~L~Ls~n~~~~~~~~~~~~l 174 (821)
++.++++|+.++++.+.+. .+|+.+++++ .+.|.+|. ++++++|++|+|++|.+.+..| ..+
T Consensus 72 ~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~ 146 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK---VSG 146 (768)
T ss_dssp HTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS---CCS
T ss_pred hHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC---HHH
Confidence 6777777777777777653 2445533332 12233332 5666666666666666665555 222
Q ss_pred -cCCCCCCEEecCCccccccCCcc---ccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCC
Q 041782 175 -AKQTELSWLALANINLIGEFPSW---LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT 250 (821)
Q Consensus 175 -~~l~~L~~L~L~~n~~~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 250 (821)
.++++|++|++++|.+.+..|.. +.++++|++|++++|.+++..|. ..+++|++|++++|.+++.+|. +++++
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence 55666666666666666665555 56666677777777666655443 6677777777777777776666 77788
Q ss_pred CCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeE
Q 041782 251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVF 330 (821)
Q Consensus 251 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 330 (821)
+|++|++++|.+++.+|..+.++++|++|++++|.+.+.++. . .+++|++|++++|.+++..+..+. ..+++|++
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~-~l~~L~~L~L~~n~l~~~ip~~~~-~~~~~L~~ 298 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---L-PLKSLQYLSLAENKFTGEIPDFLS-GACDTLTG 298 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---C-CCTTCCEEECCSSEEEESCCCCSC-TTCTTCSE
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc---c-ccCCCCEEECcCCccCCccCHHHH-hhcCcCCE
Confidence 888888888888777777778888888888888887766554 2 677888888888887755544432 12478888
Q ss_pred EecCCCCC-chhhhhhcCCCccceEecccCCCCCCCCcc-hhccCCCCeeEEEcCCCCCCCCCCCccccccC-CccEEEe
Q 041782 331 LGLASCNL-KEFLDFLNDQDQLELLDLSANKIPGKIPGW-LLNVTTGNLQFVNLSYNLITGFDRGSVVLLWT-DLVTLDL 407 (821)
Q Consensus 331 L~L~~~~l-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~-~L~~L~L 407 (821)
|++++|.+ +.+|..++.+++|++|++++|++.+.+|.. +..+ ++|++|++++|.+++..+.. +..++ +|++|++
T Consensus 299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l--~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~L 375 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLKVLDLSFNEFSGELPES-LTNLSASLLTLDL 375 (768)
T ss_dssp EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC--TTCCEEECCSSEEEECCCTT-HHHHTTTCSEEEC
T ss_pred EECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC--CCCCEEeCcCCccCccccHH-HHhhhcCCcEEEc
Confidence 88888888 577888888888899999888888777765 7777 78899999999888766653 34444 8888888
Q ss_pred ccCcccCcCCCC-----CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEec
Q 041782 408 RSNKLQGPLPIP-----PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDL 482 (821)
Q Consensus 408 ~~n~l~~~~~~~-----~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~L 482 (821)
++|.+++.+|.. ..+++.+++++|.+++.+|..++++++|++|++++|++++.+|..++ .+++|++|++
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~------~l~~L~~L~L 449 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG------SLSKLRDLKL 449 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG------GCTTCCEEEC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh------cCCCCCEEEC
Confidence 888888766654 45688888888988888888888899999999999998888887654 3677888888
Q ss_pred cCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCc
Q 041782 483 SHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562 (821)
Q Consensus 483 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 562 (821)
++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|++.+.+|..+ ..+++|++|+|++|+++
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCccc
Confidence 8888887788888888888888888888887778778888888888888888877777665 55778888888888888
Q ss_pred cCCChhhhhccchhhhhccccchhcccCCCCCcccccCCc--------cccccccc--------c--------------c
Q 041782 563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS--------SAYIFDYS--------L--------------Q 612 (821)
Q Consensus 563 g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~--------~--------------~ 612 (821)
|.+|.. +..+++|+.++++.+...+..|........... ..+..... . .
T Consensus 528 ~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 528 GNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred CcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 777755 667777777777655443332211100000000 00000000 0 0
Q ss_pred eeeeeeEE---EEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEe
Q 041782 613 YIYAYSIT---MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLD 689 (821)
Q Consensus 613 ~~~~~~~~---~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 689 (821)
........ ....+........++.|+.|||++|+++|.+|.+++++++|++|+|++|+++|.+|..|+++++|++||
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 00000000 000111111122356799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 041782 690 LSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEIS 755 (821)
Q Consensus 690 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~ 755 (821)
|++|+++|.+|..+..+++|++||+++|+++|.||.+++|.++...+|.|||++||.|+. .|...
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 999999999999999999999999999999999999999999999999999999999987 89643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.3e-64 Score=596.40 Aligned_cols=601 Identities=29% Similarity=0.399 Sum_probs=480.7
Q ss_pred CEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCC
Q 041782 88 HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH 167 (821)
Q Consensus 88 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~ 167 (821)
+++.|+|+++.+.|.++....++++++|++|||++|.+.+ .+|..+ +.++++|++|+|++|.+++..
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~------------~~~l~~L~~L~Ls~n~l~~~~ 167 (768)
T 3rgz_A 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSG------------GLKLNSLEVLDLSANSISGAN 167 (768)
T ss_dssp TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-CSSCCS------------CCCCTTCSEEECCSSCCEEET
T ss_pred CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC-cCCHHH------------hccCCCCCEEECCCCccCCcC
Confidence 4555666666665555433355566666666666665542 223221 488999999999999999988
Q ss_pred CCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccC
Q 041782 168 SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIG 247 (821)
Q Consensus 168 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 247 (821)
|..+..+.++++|++|++++|.+.+.+|. .++++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+.
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp HHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred ChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence 73333388999999999999999887764 8999999999999999988887 99999999999999999999999999
Q ss_pred CCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCC
Q 041782 248 SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNK 327 (821)
Q Consensus 248 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 327 (821)
++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|. .....+++|++|++++|.+++..+..+ ..+++
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~ 319 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFF--GSCSL 319 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCC-CSCTTCTTCSEEECCSSEEEECCCGGG--GGCTT
T ss_pred cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCH-HHHhhcCcCCEEECcCCcCCCccchHH--hcCCC
Confidence 9999999999999999888775 899999999999999987776 434446999999999999998777665 36899
Q ss_pred eeEEecCCCCC-chhhhh-hcCCCccceEecccCCCCCCCCcchhccCCC-CeeEEEcCCCCCCCCCCCcccc-ccCCcc
Q 041782 328 FVFLGLASCNL-KEFLDF-LNDQDQLELLDLSANKIPGKIPGWLLNVTTG-NLQFVNLSYNLITGFDRGSVVL-LWTDLV 403 (821)
Q Consensus 328 L~~L~L~~~~l-~~~~~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~-~~~~L~ 403 (821)
|++|++++|.+ +.+|.. +..+++|++|++++|++.+.+|..+..+ + +|++|++++|.+++..+..... .+++|+
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH--TTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh--hcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 99999999999 488866 8999999999999999999999999888 5 8999999999998866653222 267899
Q ss_pred EEEeccCcccCcCCCC---CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEE
Q 041782 404 TLDLRSNKLQGPLPIP---PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMI 480 (821)
Q Consensus 404 ~L~L~~n~l~~~~~~~---~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L 480 (821)
+|++++|.+++.+|.. ..+++.+++++|.+++.+|..++++++|++|++++|++.+.+|..+. .+++|++|
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~------~l~~L~~L 471 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM------YVKTLETL 471 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEE
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc------CCCCceEE
Confidence 9999999999888765 67899999999999999999999999999999999999999988654 47999999
Q ss_pred eccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCc
Q 041782 481 DLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560 (821)
Q Consensus 481 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 560 (821)
++++|.+++.+|..+..+++|++|++++|++++.+|.+++.+++|++|+|++|++.+.+|..+ ..+++|++|++++|+
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNL 549 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCc
Confidence 999999999999999999999999999999999999999999999999999999999998877 679999999999999
Q ss_pred CccCCChhhhhccchhhhhcccc---chhcccCCC------------------CCcccccCC-----c----cccccccc
Q 041782 561 FSGKLPSKYFQCWNAIKVANKSQ---LKYMQDQPG------------------QSLNYILPS-----S----SAYIFDYS 610 (821)
Q Consensus 561 l~g~ip~~~~~~l~~l~~l~~~~---~~~~~~~~~------------------~~l~~~~~~-----~----~~~~~~~~ 610 (821)
++|.+|..++...... .+.... ..++..... ..+...... . ........
T Consensus 550 l~g~ip~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKI-AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EESBCCGGGGTTTTCB-CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred cCCcCChHHhcccchh-hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 9999998865533221 111110 000000000 000000000 0 00000000
Q ss_pred cceeeeeeEEEEecceeeecc---cccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCe
Q 041782 611 LQYIYAYSITMVNKGIEMNYG---KVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLES 687 (821)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 687 (821)
........+++..+.+...++ ..++.|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++++++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 111223345555554443332 23678999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcccccCCCCccccCCccEEEcccCc-ccc
Q 041782 688 LDLSNNNLSGEIPRQLAELTSLAVFDVSDNN-LTG 721 (821)
Q Consensus 688 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g 721 (821)
|||++|+++|.+|.. ..+..+....+.+|+ +.|
T Consensus 709 L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred EECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999975 233445555667776 454
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.2e-57 Score=532.03 Aligned_cols=579 Identities=20% Similarity=0.173 Sum_probs=400.4
Q ss_pred CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782 87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP 166 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~ 166 (821)
.+++.|+|+++.+.+..+. ++.++++|++|+|++|.+.+ ..|.. ++++++|++|+|++|.+++.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~-~~~~~-------------~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISK-LEPEL-------------CQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCC-CCTTH-------------HHHCTTCCEEECCSSCCCCC
T ss_pred CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCc-cCHHH-------------HhcccCcCEEECCCCccCcc
Confidence 4788999999988876544 78899999999999998864 23444 67788999999999999877
Q ss_pred CCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCcccc
Q 041782 167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI 246 (821)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 246 (821)
.+ ..++++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+
T Consensus 89 ~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 89 SD---KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CT---TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred Ch---hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 66 567888999999999999877777788999999999999999988888888899999999999999887776665
Q ss_pred C--CCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccc--cCCCCCCCeEECCCcccceeccccchh
Q 041782 247 G--SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEEL--LPKLKSLIVLFLSANNLSLITRNTVNI 322 (821)
Q Consensus 247 ~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~ 322 (821)
. .+++|++|++++|.+++..|..+..+++|+.|++.++.+.+.... .. ....++|+.|++++|.+++..+..+..
T Consensus 166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE-KLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH-HHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH-HHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 4 568899999999999888888888888888888888776532211 00 113477888888888888777666543
Q ss_pred ccCCCeeEEecCCCCCchh-hhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCC--------C
Q 041782 323 RLQNKFVFLGLASCNLKEF-LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDR--------G 393 (821)
Q Consensus 323 ~~~~~L~~L~L~~~~l~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~--------~ 393 (821)
...++|+.|++++|.+..+ +..+..+++|++|++++|++.+..|..+..+ ++|++|++++|...+... .
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--FNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC--TTCCEEECTTCBCCC------CCEECT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCC--CCccEEeccchhhhcccccccccccCh
Confidence 3335588888888888544 4667888888888888888887777777777 788888888765442111 1
Q ss_pred ccccccCCccEEEeccCcccCcCCCC---CcccceeeccCCccCCCC--chhhhC--CCCCcEEEcCCCcCcccCCcccc
Q 041782 394 SVVLLWTDLVTLDLRSNKLQGPLPIP---PESTIHYLVSNNLLTGKL--APWLCN--LNSLRVLDLSHNFLSGVLPQCLS 466 (821)
Q Consensus 394 ~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~l~l~~n~~~~~~--~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~ 466 (821)
..+..+++|++|++++|.+.+..+.. ..+++.+++++|.+.... ...+.. .++|+.|++++|++++..|..+
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~- 401 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF- 401 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-
Confidence 13456678888888888887765543 466777778777654322 112222 2578888888888877766543
Q ss_pred CcccccCCCcccEEeccCccccccCc-hhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCc--ccCCCCC
Q 041782 467 NSKIFKNATNLKMIDLSHNLLQGRIP-RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH--GEIGEPD 543 (821)
Q Consensus 467 ~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~ 543 (821)
..+++|++|++++|.+++.+| ..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+
T Consensus 402 -----~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 402 -----SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp -----TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred -----hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 446778888888888776555 56777888888888888887777777778888888888888776 3445544
Q ss_pred ccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEe
Q 041782 544 TGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVN 623 (821)
Q Consensus 544 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (821)
..+++|++|++++|+++ .+|...|..+++|+.++++.+....... ....
T Consensus 477 --~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~--------------------------- 525 (680)
T 1ziw_A 477 --QPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWK-HANP--------------------------- 525 (680)
T ss_dssp --TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGS-TTST---------------------------
T ss_pred --ccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccch-hhcc---------------------------
Confidence 56778888888888877 4554545555555555444322110000 0000
Q ss_pred cceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCc
Q 041782 624 KGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQL 703 (821)
Q Consensus 624 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l 703 (821)
+........++.|+.|+|++|+++...+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+
T Consensus 526 -~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 526 -GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp -TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred -CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 0000001113446666666666663333346666666666666666665555556666666666666666666555555
Q ss_pred c-ccCCccEEEcccCcccccCCC
Q 041782 704 A-ELTSLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 704 ~-~l~~L~~L~ls~N~l~g~iP~ 725 (821)
. .+++|+.|++++|++.+.++.
T Consensus 605 ~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 605 GPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccccccCEEEccCCCcccCCcc
Confidence 5 566666666666666666553
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-56 Score=532.82 Aligned_cols=559 Identities=22% Similarity=0.232 Sum_probs=392.4
Q ss_pred ccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCC-CccccccCCCcccCCCCCCCCCC
Q 041782 75 CSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKI-PSEIMNLSSFSGQVPSLGNLTKL 153 (821)
Q Consensus 75 c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~l-p~~~~~l~~~~~~ip~l~~l~~L 153 (821)
|.|..|.+ ...+++.|+|+++.+++..+. ++.++++|++|||++|.+.+ .+ |.. ++++++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~-~i~~~~-------------f~~L~~L 75 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPL-TIDKEA-------------FRNLPNL 75 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCC-EECTTT-------------TSSCTTC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCcc-ccCHHH-------------hcCCCCC
Confidence 56777777 346788999999888876665 88899999999999886532 23 333 7888899
Q ss_pred CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCcc--ccCCCCCCEEEccCCcCCCCcc-hhhhcCCCCCE
Q 041782 154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSW--LMNLTQLTYINFDLNQLTGPIP-NWLANLNRLTI 230 (821)
Q Consensus 154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~ 230 (821)
++|+|++|.+++..| ..+.++++|++|++++|.+.+.+|.. |.++++|++|++++|.+++..+ ..|+++++|++
T Consensus 76 ~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 76 RILDLGSSKIYFLHP---DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp CEEECTTCCCCEECT---TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CEEECCCCcCcccCH---hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 999999999988888 67788888999999999888876665 8889999999999998887654 57888999999
Q ss_pred EEccCCcCCCCCccccCCC--CCCCEEEccCccCCCCCCccccCCCC------cCeeccccCCceeecccccccC--CCC
Q 041782 231 LSLKSNQLRGYLPSQIGSL--TQLTALDLSCNQFQGPVPSSISELKR------LEYLDLHSNNLSGNVYIEELLP--KLK 300 (821)
Q Consensus 231 L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~~~l~--~l~ 300 (821)
|++++|.+++..+..+..+ ++|++|++++|.+.+..|..++.+++ |++|++++|.+++..+. .... ...
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~l~~~ 231 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG-NFSNAISKS 231 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS-GGGGTSCSC
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH-HHHhhcCcc
Confidence 9999998888888888777 88899999999888888877776665 88888888887765443 2111 235
Q ss_pred CCCeEECCCcccceeccccchhccCCCeeEEecCCCCCc-hhhhhhcC--CCccceEecccCCCCCCCCcchhccCCCCe
Q 041782 301 SLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLK-EFLDFLND--QDQLELLDLSANKIPGKIPGWLLNVTTGNL 377 (821)
Q Consensus 301 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L 377 (821)
+++.+.++.+..... +..+.+. .....+.. .++|+.|++++|.+.+..|..+..+ ++|
T Consensus 232 ~l~~L~l~~~~~~~~-----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L 292 (844)
T 3j0a_A 232 QAFSLILAHHIMGAG-----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL--KDL 292 (844)
T ss_dssp CBSEEECCSSCCBCS-----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC--CCC
T ss_pred cccceeccccccccc-----------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC--CCC
Confidence 667777664322110 0001110 00111111 1445555555555554444444444 455
Q ss_pred eEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCC---CcccceeeccCCccCCCCchhhhCCCCCcEEEcCC
Q 041782 378 QFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP---PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSH 454 (821)
Q Consensus 378 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~ 454 (821)
+.|+|++|.+++..+. .+..+++|++|++++|.+.+..+.. .++++.+++++|.+.+..+..+..+++|++|++++
T Consensus 293 ~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 293 KVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 5555555555544433 2334455555555555554433322 33455555555555555566788889999999999
Q ss_pred CcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC-chhhCCCCCCCEEEccCC
Q 041782 455 NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF-PSWLGTLPELKVLMLQFN 533 (821)
Q Consensus 455 n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N 533 (821)
|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|++|+|++|
T Consensus 372 N~l~~i-----------~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 372 NALTTI-----------HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp CCSCCC-----------SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred CCCCcc-----------cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCC
Confidence 988743 12678999999999988 45543 567899999999998863 344668999999999999
Q ss_pred cCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccce
Q 041782 534 RFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQY 613 (821)
Q Consensus 534 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 613 (821)
++++..+.. ....+++|+.|++++|.+++..+.....
T Consensus 437 ~l~~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------ 473 (844)
T 3j0a_A 437 RFSSCSGDQ-TPSENPSLEQLFLGENMLQLAWETELCW------------------------------------------ 473 (844)
T ss_dssp CCCCCCSSS-SSCSCTTCCBCEEESCCCSSSCCSCCCS------------------------------------------
T ss_pred ccccccccc-ccccCCccccccCCCCccccccccccch------------------------------------------
Confidence 988654332 2245789999999999987332211000
Q ss_pred eeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCC
Q 041782 614 IYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN 693 (821)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 693 (821)
.....++.|+.|+|++|++++..|..|.++++|++|+|++|++++..|..+. ++|+.|||++|
T Consensus 474 ---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 474 ---------------DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ---------------SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred ---------------hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 0001134588999999999999999999999999999999999987777665 89999999999
Q ss_pred cccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q 041782 694 NLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISES 757 (821)
Q Consensus 694 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~~~ 757 (821)
++++.+|..|. +|+.|++++|++.|.++... |..+ ...++..+||.+....|..|..
T Consensus 537 ~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~-f~~~---~~~~~~~~~~~~~~~~C~~p~~ 593 (844)
T 3j0a_A 537 QLLAPNPDVFV---SLSVLDITHNKFICECELST-FINW---LNHTNVTIAGPPADIYCVYPDS 593 (844)
T ss_dssp CCCCCCSCCCS---SCCEEEEEEECCCCSSSCCS-HHHH---HHHTTTTTCCCGGGCCCSSCSS
T ss_pred cCCCCChhHhC---CcCEEEecCCCcccccccHH-HHHH---HHhcCcccccccccCccCCchh
Confidence 99999998764 78899999999999887432 2111 1245667788777778875543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-53 Score=505.14 Aligned_cols=544 Identities=21% Similarity=0.180 Sum_probs=341.1
Q ss_pred CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782 87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP 166 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~ 166 (821)
.+++.|+|+++.+.+..+. ++.++++|++|+|++|.+. .+|+.. ++++++|++|+|++|.+++.
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~--~l~~~~------------~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQHNELS--QLSDKT------------FAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp TTCSEEECCSSCCCCCCTT--HHHHCTTCCEEECCSSCCC--CCCTTT------------TTTCTTCSEEECCSSCCCCC
T ss_pred CcCcEEECCCCccCccCHH--HHhcccCcCEEECCCCccC--ccChhh------------hccCCCCCEEECCCCccCcc
Confidence 5789999999999887765 8999999999999999986 355431 78999999999999999988
Q ss_pred CCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhh--cCCCCCEEEccCCcCCCCCcc
Q 041782 167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA--NLNRLTILSLKSNQLRGYLPS 244 (821)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~p~ 244 (821)
.| ..++++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|.
T Consensus 113 ~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 113 KN---NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CS---CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred Ch---hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 88 6778999999999999999998899999999999999999999987777665 568999999999999988888
Q ss_pred ccCCCCCCCEEEccCccCCCCCCccc---cCCCCcCeeccccCCceeecccccccCCCC--CCCeEECCCcccceecccc
Q 041782 245 QIGSLTQLTALDLSCNQFQGPVPSSI---SELKRLEYLDLHSNNLSGNVYIEELLPKLK--SLIVLFLSANNLSLITRNT 319 (821)
Q Consensus 245 ~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~ 319 (821)
.+..+++|+.|+++++.+.+.....+ ...++|++|++++|.+.+..+. .+..++ +|++|++++|.++++.+..
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~--~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT--TFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT--TTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh--HhhccCcCCCCEEECCCCCcCccCccc
Confidence 88777666666555554432111111 0224555555555555543322 233332 2555555555555544433
Q ss_pred chhccCCCeeEEecCCCCC-chhhhhhcCCCccceEecccCCCCC-----CCCc----chhccCCCCeeEEEcCCCCCCC
Q 041782 320 VNIRLQNKFVFLGLASCNL-KEFLDFLNDQDQLELLDLSANKIPG-----KIPG----WLLNVTTGNLQFVNLSYNLITG 389 (821)
Q Consensus 320 ~~~~~~~~L~~L~L~~~~l-~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~p~----~l~~~~~~~L~~L~Ls~n~l~~ 389 (821)
+ ..+++|++|++++|.+ +..|..+..+++|++|++++|...+ .+|. .+..+ ++|++|++++|.+++
T Consensus 268 ~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l--~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 268 F--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL--KCLEHLNMEDNDIPG 343 (680)
T ss_dssp T--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC--TTCCEEECCSCCBCC
T ss_pred c--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC--CCCCEEECCCCccCC
Confidence 3 2345555555555555 2233445555555555555543332 1121 23333 455555555555555
Q ss_pred CCCCccccccCCccEEEeccCcccCcC-CCC------CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCC
Q 041782 390 FDRGSVVLLWTDLVTLDLRSNKLQGPL-PIP------PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462 (821)
Q Consensus 390 ~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~------~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 462 (821)
..+. .+..+++|++|++++|.+.... +.. ..+++.+++++|.+++..|..+..+++|++|++++|.+.+.+|
T Consensus 344 ~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 344 IKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 4433 2344455555555555433211 100 1245555555555555555555555555555555555554444
Q ss_pred ccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCC--cCCchhhCCCCCCCEEEccCCcCcccCC
Q 041782 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIA--DIFPSWLGTLPELKVLMLQFNRFHGEIG 540 (821)
Q Consensus 463 ~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 540 (821)
.. .|.++++|++|++++|++.+..+..|..+++|++|++++|.+. +..|..+..+++|++|++++|++++..+
T Consensus 423 ~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~ 497 (680)
T 1ziw_A 423 GQ-----EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497 (680)
T ss_dssp SG-----GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cc-----cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence 21 2334555555555555555555555555555555555555554 3345555555555555555555554333
Q ss_pred CCCccCCCCCCcEEEccCCcCccCC-------ChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccce
Q 041782 541 EPDTGFVFPKLRIIDLSHNRFSGKL-------PSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQY 613 (821)
Q Consensus 541 ~~~~~~~l~~L~~L~Ls~N~l~g~i-------p~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 613 (821)
..+ ..+++|++|++++|++++.. |...+..++.|+.++++.+... ..+
T Consensus 498 ~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~---------------------- 552 (680)
T 1ziw_A 498 DML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIP---------------------- 552 (680)
T ss_dssp TTT--TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCC----------------------
T ss_pred hhh--ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCC----------------------
Confidence 333 34555555555555554311 1111334444444443322110 000
Q ss_pred eeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhc-CccCCCeEeCCC
Q 041782 614 IYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG-NLTVLESLDLSN 692 (821)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~Ls~ 692 (821)
......++.|+.|+|++|++++..+..|.++++|++|+|++|++++..|..++ .+++|+.|++++
T Consensus 553 --------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 553 --------------VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp --------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred --------------HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 00001145599999999999977777789999999999999999999999888 899999999999
Q ss_pred CcccccCC
Q 041782 693 NNLSGEIP 700 (821)
Q Consensus 693 N~l~~~~p 700 (821)
|++.+.-+
T Consensus 619 N~~~c~c~ 626 (680)
T 1ziw_A 619 NPFDCTCE 626 (680)
T ss_dssp CCCCBCCC
T ss_pred CCcccCCc
Confidence 99987654
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.8e-53 Score=491.75 Aligned_cols=516 Identities=21% Similarity=0.175 Sum_probs=362.8
Q ss_pred CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG 192 (821)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 192 (821)
+++++|||++|.+++. .|.. ++++++|++|+|++|.+.+..| ..+.++++|++|++++|.+.+
T Consensus 33 ~~l~~L~Ls~n~i~~~-~~~~-------------~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTI-QNTT-------------FSRLINLTFLDLTRCQIYWIHE---DTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp TTCCEEECTTCCCSEE-CTTT-------------STTCTTCSEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCSE
T ss_pred CcCcEEEccCCccCcC-ChhH-------------hccCccceEEECCCCccceeCh---hhccCccccCeeeCCCCcccc
Confidence 4789999999888631 2333 7888889999999998888877 667788888888888888888
Q ss_pred cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccC
Q 041782 193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE 272 (821)
Q Consensus 193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 272 (821)
..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence 88888888888888888888888766777888888888888888888654445556888888888888888777778888
Q ss_pred CCCcC--eeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCC---Cchh-hhhhc
Q 041782 273 LKRLE--YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCN---LKEF-LDFLN 346 (821)
Q Consensus 273 l~~L~--~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~---l~~~-~~~l~ 346 (821)
+++|+ .|++++|.+++..+. .....+|++|++++|..... .+.......+..+.+.... ...+ +..+.
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~---~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPG---AFDSAVFQSLNFGGTQNLLV---IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTT---TTTTCEEEEEECTTCSCHHH---HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred hcccceeEEecCCCccCccChh---HhhhccccccccCCchhHHH---HhhhccccchhheechhhccccccccChhHhc
Confidence 88888 788888888865443 23446788888887752110 0000001122222222111 0011 11111
Q ss_pred CCC--ccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCC---Cc
Q 041782 347 DQD--QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP---PE 421 (821)
Q Consensus 347 ~l~--~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~ 421 (821)
.+. +|+.|++++|.+.+..+..+..+ ++|++|++++|.++.++.. +..+++|++|++++|.+.+..|.. .+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCF--SGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTC--TTCSEEECTTSCCSCCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred hhhcCceeEEEeecCccCccCHHHhccc--cCCCEEeccCCccCCCChh--hcccccCCEEECccCCcCcCchhhhhccC
Confidence 111 56666666666666555556665 6666666666666654432 445566666666666666543322 34
Q ss_pred ccceeeccCCccCCCCch-hhhCCCCCcEEEcCCCcCcccC--CccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782 422 STIHYLVSNNLLTGKLAP-WLCNLNSLRVLDLSHNFLSGVL--PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC 498 (821)
Q Consensus 422 ~l~~l~l~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 498 (821)
+++.+++++|.+.+.++. .+..+++|++|++++|.+.+.. |.. +..+++|++|++++|.+.+..|..|..+
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT------TTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh------cccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 555556666655554443 3667777777777777776553 322 3456777777777777776667777777
Q ss_pred CCCCEEeCCCCcCCcCCch-hhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCC-Ch-hhhhccch
Q 041782 499 TMLEFLDLGNNQIADIFPS-WLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKL-PS-KYFQCWNA 575 (821)
Q Consensus 499 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~i-p~-~~~~~l~~ 575 (821)
++|++|++++|++++..+. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|++++.. |. ..+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~----- 472 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL----- 472 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG-----
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh-----
Confidence 7777777777777766443 36677777777777777776655554 45777777777777776421 10 000
Q ss_pred hhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccccc
Q 041782 576 IKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI 655 (821)
Q Consensus 576 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l 655 (821)
..++.|+.|++++|++++..|..|
T Consensus 473 --------------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 473 --------------------------------------------------------QTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp --------------------------------------------------------GGCTTCCEEECTTSCCCEECTTTT
T ss_pred --------------------------------------------------------ccCCCccEEECCCCccCccChhhh
Confidence 114458899999999998889999
Q ss_pred ccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782 656 SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 656 ~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 725 (821)
+++++|++|+|++|++++.+|..|.+++.| +|+|++|++++.+|..+..+++|++|++++|+++|.++.
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999999999 999999999998888899999999999999999987764
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-55 Score=511.49 Aligned_cols=522 Identities=20% Similarity=0.278 Sum_probs=334.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccc---cceeeCCCCCCEEEEEcCCCCCcccccCC
Q 041782 30 LCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSW---DGVKCNEDTGHVIKLNLTSSCIYGSINSS 106 (821)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~g~~~~~ 106 (821)
.....|+.||.+||+++.++.-. ......+...+|+. +.+||.| +||+|+.. |||++|+|+++++.|.+++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~-~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~- 99 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWS-QQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD- 99 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCC-CCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG-
T ss_pred hhHHHHHHHHHHHHHHcCCCCcc-cCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh-
Confidence 34457999999999998654210 00011224568987 6899999 99999865 8999999999999999987
Q ss_pred cccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecC
Q 041782 107 SSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALA 186 (821)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~ 186 (821)
+++++++|++|+|++|.+..+. ..++.. .....+|. ..+.+|+ +++++|.+.+.+|..+..+ +..+..+++.
T Consensus 100 -~l~~L~~L~~L~Ls~N~~~~~~--~~~~~~-~~~~~~~~-~~~~~l~-l~l~~~~l~~~~~~~~~~~--~~~l~~~~l~ 171 (636)
T 4eco_A 100 -AIGQLTELEVLALGSHGEKVNE--RLFGPK-GISANMSD-EQKQKMR-MHYQKTFVDYDPREDFSDL--IKDCINSDPQ 171 (636)
T ss_dssp -GGGGCTTCCEEESCCGGGGGTC--CSBSTT-SBCTTCCH-HHHHHHH-THHHHHHTCCCGGGGSCHH--HHHHHHHCTT
T ss_pred -HHhcCccceEEECcCCccccCC--cccccc-ccccCchH-HHHHHHH-hhHHHhhhccCchhhHHHH--HHHHhhcCcc
Confidence 9999999999999999762111 000000 00002222 0145666 7888887777766322211 2222223332
Q ss_pred CccccccCCccccCCCCCCEEEcc--CCcCCCCcchhhhcCCCCCEEEccCCcCCCC-----------------CccccC
Q 041782 187 NINLIGEFPSWLMNLTQLTYINFD--LNQLTGPIPNWLANLNRLTILSLKSNQLRGY-----------------LPSQIG 247 (821)
Q Consensus 187 ~n~~~~~~p~~l~~l~~L~~L~Ls--~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~ 247 (821)
...+. ......++.+.+. .|++++ +|..++++++|++|+|++|.+++. +|..++
T Consensus 172 ~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 172 QKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp SCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred ccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 21111 0111222222222 456665 666777777777777777777764 777777
Q ss_pred --CCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCC-cee-ecccccccCCC------CCCCeEECCCcccceecc
Q 041782 248 --SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN-LSG-NVYIEELLPKL------KSLIVLFLSANNLSLITR 317 (821)
Q Consensus 248 --~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~l~~l------~~L~~L~L~~n~l~~~~~ 317 (821)
++++|++|++++|.+.+.+|..|+++++|++|++++|+ ++| .+|. .+..+ ++|++|++++|.++
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~n~l~---- 318 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD--DWQALADAPVGEKIQIIYIGYNNLK---- 318 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH--HHHHHHHSGGGGTCCEEECCSSCCS----
T ss_pred hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH--HHHhhhccccCCCCCEEECCCCcCC----
Confidence 77778888888777777777777777888888888777 665 4443 12222 34444444443333
Q ss_pred ccchhccCCCeeEEecCCCCCchhhh--hhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCcc
Q 041782 318 NTVNIRLQNKFVFLGLASCNLKEFLD--FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSV 395 (821)
Q Consensus 318 ~~~~~~~~~~L~~L~L~~~~l~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~ 395 (821)
.+|. .++.+++|++|++++|++.|.+| .+..+ ++|++|++++|.++
T Consensus 319 ----------------------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l--~~L~~L~L~~N~l~------- 366 (636)
T 4eco_A 319 ----------------------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE--IKLASLNLAYNQIT------- 366 (636)
T ss_dssp ----------------------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE--EEESEEECCSSEEE-------
T ss_pred ----------------------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC--CCCCEEECCCCccc-------
Confidence 3333 45555666666666666665555 44444 44444444444443
Q ss_pred ccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCC-CcEEEcCCCcCcccCCccccCcccccCC
Q 041782 396 VLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNS-LRVLDLSHNFLSGVLPQCLSNSKIFKNA 474 (821)
Q Consensus 396 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~~~~~~~l 474 (821)
.+|..+..+++ |++|++++|+++ .+|..+.. ..+
T Consensus 367 ----------------------------------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~----~~l 401 (636)
T 4eco_A 367 ----------------------------------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA----KSV 401 (636)
T ss_dssp ----------------------------------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT----TCS
T ss_pred ----------------------------------------cccHhhhhhcccCcEEEccCCcCc-ccchhhhh----ccc
Confidence 23334555555 666666666666 45544322 113
Q ss_pred CcccEEeccCccccccCchhhc-------CCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCcc--
Q 041782 475 TNLKMIDLSHNLLQGRIPRSLA-------NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTG-- 545 (821)
Q Consensus 475 ~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-- 545 (821)
++|++|++++|.+++..|..+. .+++|++|++++|+++...+..+..+++|++|+|++|+++ .+|.....
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 3666667777766666666665 5667777777777777655555556777777777777777 45543311
Q ss_pred ----CCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEE
Q 041782 546 ----FVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITM 621 (821)
Q Consensus 546 ----~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (821)
..+++|++|+|++|+++ .+|..++.
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------------------------------- 509 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------------------------------------------------- 509 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------------------------------------
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhh--------------------------------------------------
Confidence 11238889999999887 67754210
Q ss_pred EecceeeecccccccccEEEcccccccCccccccccCCCCCEEeC------CCcccCcchhhhhcCccCCCeEeCCCCcc
Q 041782 622 VNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNL------SGNNLLGHIPSSLGNLTVLESLDLSNNNL 695 (821)
Q Consensus 622 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 695 (821)
..++.|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..++++++|++|+|++|++
T Consensus 510 ----------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 510 ----------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp ----------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ----------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 013348889999999987 8888999999999999 56888999999999999999999999999
Q ss_pred cccCCCCccccCCccEEEcccCcccc
Q 041782 696 SGEIPRQLAELTSLAVFDVSDNNLTG 721 (821)
Q Consensus 696 ~~~~p~~l~~l~~L~~L~ls~N~l~g 721 (821)
+.+|..+. ++|++||+++|++..
T Consensus 579 -~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 579 -RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp -CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred -CccCHhHh--CcCCEEECcCCCCcc
Confidence 68888766 799999999998875
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-52 Score=489.65 Aligned_cols=513 Identities=21% Similarity=0.154 Sum_probs=264.6
Q ss_pred CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG 192 (821)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 192 (821)
++|++|+|++|.+.+ +|.. .+.++++|++|+|++|.+++..| ..+.++++|++|++++|.+.+
T Consensus 32 ~~l~~L~Ls~n~l~~--~~~~------------~~~~l~~L~~L~Ls~n~l~~i~~---~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI--LKSY------------SFSNFSELQWLDLSRCEIETIED---KAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp TTCCEEECTTSCCCE--ECTT------------TTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCC
T ss_pred CCcCEEECCCCCcCE--eChh------------hccCCccCcEEeCCCCcccccCH---HHhhchhhcCEeECCCCcccc
Confidence 556666666665542 2221 05556666666666666655555 444555555555555555555
Q ss_pred cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCC-CCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782 193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG-YLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271 (821)
Q Consensus 193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 271 (821)
..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..|..++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 555555555555555555555554444555555555555555555553 3455555555555555555555554454454
Q ss_pred CCCCcC----eeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC--chhhhhh
Q 041782 272 ELKRLE----YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL--KEFLDFL 345 (821)
Q Consensus 272 ~l~~L~----~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l--~~~~~~l 345 (821)
.+++|+ +|++++|.++ .+++..+. ..+|+.|++++|.+ ..+|..+
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~--------------------------~~~~~~~~---~~~L~~L~L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPID--------------------------FIQDQAFQ---GIKLHELTLRGNFNSSNIMKTCL 225 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCC--------------------------EECTTTTT---TCEEEEEEEESCCSCHHHHHHHH
T ss_pred hhhccccccceeeccCCCcc--------------------------eeCccccc---CceeeeeeccCCccchhHHHHHh
Confidence 444433 4555555554 44333321 12445555555544 2445555
Q ss_pred cCCCccceEecccCCCCCC------CCcchhccCCCCeeEEEc-CCCCCCCCCCCccccccCCccEEEeccCcccCcCCC
Q 041782 346 NDQDQLELLDLSANKIPGK------IPGWLLNVTTGNLQFVNL-SYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI 418 (821)
Q Consensus 346 ~~l~~L~~L~Ls~n~l~~~------~p~~l~~~~~~~L~~L~L-s~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 418 (821)
..++.++.+++..+.+.+. .+..+..+....++.+++ ..+.+.+..+. +..+++|++|++++|.+......
T Consensus 226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~l 303 (606)
T 3vq2_A 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLEDV 303 (606)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCCCC
T ss_pred ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhhhc
Confidence 5555555555543332211 111111111123444555 44444444443 44455555555555555432211
Q ss_pred C-CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccccc--Cchhh
Q 041782 419 P-PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR--IPRSL 495 (821)
Q Consensus 419 ~-~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~ 495 (821)
. ..+++.+++++|.+ +.+|. + .+++|++|++++|+..+.+ .+..+++|++|++++|.+++. .|..+
T Consensus 304 ~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--------KKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp CTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--------CCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred cccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--------hhccCCCCCEEECcCCccCCCcchhhhh
Confidence 1 33555555555555 44552 3 5666666666666443332 123456666666666666544 25556
Q ss_pred cCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCC-CCCccCCCCCCcEEEccCCcCccCCChhhhhccc
Q 041782 496 ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIG-EPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWN 574 (821)
Q Consensus 496 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~ 574 (821)
..+++|++|++++|.+++. |..+..+++|++|++++|++.+..+ ..+ ..+++|++|++++|.+++..|.. +..++
T Consensus 373 ~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~ 448 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKIDFDGI-FLGLT 448 (606)
T ss_dssp HCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEECCTTT-TTTCT
T ss_pred ccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEEECcCCCCCccchhh-hcCCC
Confidence 6666666666666666553 3555566666666666666655444 222 44566666666666665544432 33333
Q ss_pred hhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccc
Q 041782 575 AIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTS 654 (821)
Q Consensus 575 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 654 (821)
+|+.++++.+..... ........++.|+.|++++|++++..|..
T Consensus 449 ~L~~L~l~~n~l~~~------------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDN------------------------------------TLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TCCEEECTTCEEGGG------------------------------------EECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred CCCEEECCCCcCCCc------------------------------------chHHhhccCCCCCEEECCCCcCCccChhh
Confidence 222222221110000 00000001234666666666666666666
Q ss_pred cccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccC-CccEEEcccCcccccCCC
Q 041782 655 ISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT-SLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 655 l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~ 725 (821)
++++++|++|+|++|++++.+|..|+++++|++|+|++|+++ .+|..+..++ +|++|++++|++.+.+|.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 666666666666666666666666666666666666666666 4455566665 466666666666665553
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-51 Score=480.10 Aligned_cols=526 Identities=20% Similarity=0.205 Sum_probs=425.4
Q ss_pred ccceeeCCC---------CCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCC
Q 041782 77 WDGVKCNED---------TGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSL 147 (821)
Q Consensus 77 w~gv~C~~~---------~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l 147 (821)
+..+.|... ...++.|+|+++.+++..+. ++.++++|++|+|++|.+.. ..|.. +
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~-~~~~~-------------~ 77 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYW-IHEDT-------------F 77 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCE-ECTTT-------------T
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChh--HhccCccceEEECCCCccce-eChhh-------------c
Confidence 455778542 24789999999999987665 89999999999999999863 23444 8
Q ss_pred CCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCC
Q 041782 148 GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNR 227 (821)
Q Consensus 148 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 227 (821)
+++++|++|+|++|.+++..| ..++++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+..+++
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 154 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAE---TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECT---TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred cCccccCeeeCCCCcccccCh---hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence 999999999999999999888 77889999999999999998877788999999999999999999754445556999
Q ss_pred CCEEEccCCcCCCCCccccCCCCCCC--EEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeE
Q 041782 228 LTILSLKSNQLRGYLPSQIGSLTQLT--ALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL 305 (821)
Q Consensus 228 L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L 305 (821)
|++|++++|.+++..|..++.+++|+ +|++++|.+++..|..+. ..+|++|++++|.... ..+..+..++..
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~-----~~~~~l~~~~l~ 228 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLL-----VIFKGLKNSTIQ 228 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHH-----HHHHHTTTCEEE
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHH-----HHhhhccccchh
Confidence 99999999999988889999999999 999999999987777654 4789999999986221 223344443333
Q ss_pred ECCCcccc-----eeccccchhccCCCeeEEecCCCCCchhhh-hhcCCCccceEecccCCCCCCCCcchhccCCCCeeE
Q 041782 306 FLSANNLS-----LITRNTVNIRLQNKFVFLGLASCNLKEFLD-FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF 379 (821)
Q Consensus 306 ~L~~n~l~-----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~ 379 (821)
.+....+. .+....+......+++.+++++|.+..++. .+..+++|++|++++|+++ .+|..+..+ ++|++
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l--~~L~~ 305 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL--STLKK 305 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC--TTCCE
T ss_pred heechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccc--ccCCE
Confidence 32222111 111222221122378888888888865544 4778888888888888887 677777777 78888
Q ss_pred EEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCC----CcccceeeccCCccCCCC--chhhhCCCCCcEEEcC
Q 041782 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP----PESTIHYLVSNNLLTGKL--APWLCNLNSLRVLDLS 453 (821)
Q Consensus 380 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~l~~l~l~~n~~~~~~--~~~l~~l~~L~~L~Ls 453 (821)
|++++|.+++..+. .+..+++|++|++++|.+.+.++.. ..+++.+++++|.+.+.. +..+..+++|++|+++
T Consensus 306 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 306 LVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp EECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred EECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence 88888888877654 4567788888888888887665543 567888888888887765 7788999999999999
Q ss_pred CCcCcccCCccccCcccccCCCcccEEeccCccccccCch-hhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccC
Q 041782 454 HNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPR-SLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQF 532 (821)
Q Consensus 454 ~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 532 (821)
+|++.+..|..+ ..+++|++|++++|.+++..+. .+..+++|++|++++|++++..|..++.+++|++|++++
T Consensus 385 ~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 385 YNEPLSLKTEAF------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp SCSCEEECTTTT------TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred CCcCCcCCHHHh------cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 999998877654 4589999999999999877654 489999999999999999999999999999999999999
Q ss_pred CcCccc-CCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccccccccc
Q 041782 533 NRFHGE-IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSL 611 (821)
Q Consensus 533 N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 611 (821)
|++.+. ++.......+++|++|++++|++++..|.. |..
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~--------------------------------------- 498 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTS--------------------------------------- 498 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTT---------------------------------------
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhh-hcc---------------------------------------
Confidence 999863 333333467999999999999998655532 221
Q ss_pred ceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCC
Q 041782 612 QYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLS 691 (821)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls 691 (821)
++.|+.|+|++|++++..|..+.+++.| +|+|++|++++.+|..++.+++|++|+++
T Consensus 499 ----------------------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 499 ----------------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp ----------------------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred ----------------------ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 3448999999999999999999999999 99999999999999999999999999999
Q ss_pred CCcccccCC
Q 041782 692 NNNLSGEIP 700 (821)
Q Consensus 692 ~N~l~~~~p 700 (821)
+|++.+..+
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCccccCC
Confidence 999987654
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-52 Score=495.01 Aligned_cols=260 Identities=21% Similarity=0.208 Sum_probs=154.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCC--CCCCC--ccc------------cceeeCCCCCCEEE
Q 041782 28 HQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEE--EDRDC--CSW------------DGVKCNEDTGHVIK 91 (821)
Q Consensus 28 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~--~~~~~--c~w------------~gv~C~~~~~~v~~ 91 (821)
.+.+..+|+.||++||+++.++ +|+.+. ...+| |.| .||+|+. .+||++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~ 327 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTG 327 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEE
T ss_pred ccccchHHHHHHHHHHHHcCCC--------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEE
Confidence 3456678999999999999532 575421 01344 999 9999986 589999
Q ss_pred EEcCCCCCcccccCCcccccCCCCCEEeC-CCCCCCCCCCCcccccc----C-------------CCcccCCCCCCCCCC
Q 041782 92 LNLTSSCIYGSINSSSSLFHLRHLEWLSL-ADNNFNYSKIPSEIMNL----S-------------SFSGQVPSLGNLTKL 153 (821)
Q Consensus 92 L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~lp~~~~~l----~-------------~~~~~ip~l~~l~~L 153 (821)
|+|+++++.|.+|+ ++++|++|++||| ++|.+.+. .|-..... + .+....+. ..+..+
T Consensus 328 L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~-~~~s~l 403 (876)
T 4ecn_A 328 LSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR-LNLSDL 403 (876)
T ss_dssp EECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG-GGSCHH
T ss_pred EECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcc-hhhhHH
Confidence 99999999999987 9999999999999 88877653 22110000 0 00000000 000000
Q ss_pred CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC--ccccccCCccccCCCCCCEEEccCCcCCC---------------
Q 041782 154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALAN--INLIGEFPSWLMNLTQLTYINFDLNQLTG--------------- 216 (821)
Q Consensus 154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~--n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------- 216 (821)
..-.+..+ ....+ ........++.+.+.. |.+.+ +|..|+++++|++|+|++|.+++
T Consensus 404 ~~~~l~~~--~~~~~---i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 404 LQDAINRN--PEMKP---IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp HHHHHHTC--TTSCC---CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHhhhC--ccccc---cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 00000000 00000 0001122233333332 55555 66666666666667766666665
Q ss_pred --Ccchhhh--cCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCcc-CCC-CCCccccCCC-------CcCeecccc
Q 041782 217 --PIPNWLA--NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ-FQG-PVPSSISELK-------RLEYLDLHS 283 (821)
Q Consensus 217 --~~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~ 283 (821)
.+|..++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+++++ +|++|++++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 2666655 77777777777777666777777777777777777776 665 5665555444 777777777
Q ss_pred CCceeecccccccCCCCCCCeEECCCcccc
Q 041782 284 NNLSGNVYIEELLPKLKSLIVLFLSANNLS 313 (821)
Q Consensus 284 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 313 (821)
|.++ .+|....+.++++|++|++++|.++
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 7766 3332114666666666666666655
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-51 Score=497.40 Aligned_cols=523 Identities=23% Similarity=0.232 Sum_probs=340.8
Q ss_pred cCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCC-CCCchhccCCCCCCEEecCCcc
Q 041782 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH-SASFSWIAKQTELSWLALANIN 189 (821)
Q Consensus 111 ~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~l~~L~~L~L~~n~ 189 (821)
-.++|++|||++|.+++. .|.. +.++++|++|+|++|.+.+.+ | ..+.++++|++|+|++|.
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~-------------~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASS-------------FPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSS-------------CSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTCC
T ss_pred CCCCcCEEECCCCcCCcc-ChhH-------------CcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCCc
Confidence 457788888888777531 2333 677778888888877555443 4 556777778888888887
Q ss_pred ccccCCccccCCCCCCEEEccCCcCCCCcchh--hhcCCCCCEEEccCCcCCCCCc-cccCCCCCCCEEEccCccCCCCC
Q 041782 190 LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNW--LANLNRLTILSLKSNQLRGYLP-SQIGSLTQLTALDLSCNQFQGPV 266 (821)
Q Consensus 190 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~ 266 (821)
+.+..|..|.++++|++|+|++|.+++.+|.. |+++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 77777777777888888888888777655554 7777788888888877776544 46777788888888887777777
Q ss_pred CccccCC--CCcCeeccccCCceeecccccccCCCCC------CCeEECCCcccceeccccchh-ccCCCeeEEecCCCC
Q 041782 267 PSSISEL--KRLEYLDLHSNNLSGNVYIEELLPKLKS------LIVLFLSANNLSLITRNTVNI-RLQNKFVFLGLASCN 337 (821)
Q Consensus 267 p~~l~~l--~~L~~L~L~~n~l~~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~L~~~~ 337 (821)
+..+..+ ++|+.|++++|.+.+..+. .+..+.+ |++|++++|.++...+..+.. ....++..+.+..+.
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSV--DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCC--CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred HHHcccccCCccceEECCCCcccccccc--chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 7777666 7777777777777664443 1333332 666666666655433332210 011223333332221
Q ss_pred CchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCC
Q 041782 338 LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP 417 (821)
Q Consensus 338 l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 417 (821)
.+. ++..+.+.+..+..+..+..++|+.|++++|.+++..+. .+..+++|++|++++|++.+..+
T Consensus 243 ~~~--------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 243 MGA--------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CBC--------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCCEECT
T ss_pred ccc--------------cccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCCCCCh
Confidence 110 011222332333334443336788888888888776654 45667788888888887776544
Q ss_pred CC---CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchh
Q 041782 418 IP---PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS 494 (821)
Q Consensus 418 ~~---~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 494 (821)
.. ..+++.+++++|.+.+..+..+..+++|++|++++|++.+..+.. |.++++|++|++++|.+++.
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~------~~~l~~L~~L~Ls~N~l~~i---- 377 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT------FKFLEKLQTLDLRDNALTTI---- 377 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC------SCSCCCCCEEEEETCCSCCC----
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh------hcCCCCCCEEECCCCCCCcc----
Confidence 32 345566666666666555556666666666666666665443332 33455666666666665521
Q ss_pred hcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccc
Q 041782 495 LANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWN 574 (821)
Q Consensus 495 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~ 574 (821)
..+++|+.|++++|+++.. |. ...+++.|++++|++.+. +.......+++|++|+|++|++++..+...
T Consensus 378 -~~~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ls~N~l~~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----- 446 (844)
T 3j0a_A 378 -HFIPSIPDIFLSGNKLVTL-PK---INLTANLIHLSENRLENL-DILYFLLRVPHLQILILNQNRFSSCSGDQT----- 446 (844)
T ss_dssp -SSCCSCSEEEEESCCCCCC-CC---CCTTCCEEECCSCCCCSS-TTHHHHTTCTTCCEEEEESCCCCCCCSSSS-----
T ss_pred -cCCCCcchhccCCCCcccc-cc---cccccceeecccCccccC-chhhhhhcCCccceeeCCCCcccccccccc-----
Confidence 1255566666666666543 22 134556666666665532 111111245566666666666553221100
Q ss_pred hhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEccccccc-----C
Q 041782 575 AIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI-----G 649 (821)
Q Consensus 575 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~ 649 (821)
....+.|+.|+|++|.++ +
T Consensus 447 --------------------------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 447 --------------------------------------------------------PSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp --------------------------------------------------------SCSCTTCCBCEEESCCCSSSCCSC
T ss_pred --------------------------------------------------------cccCCccccccCCCCccccccccc
Confidence 001345899999999997 4
Q ss_pred ccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCC
Q 041782 650 KIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQF 729 (821)
Q Consensus 650 ~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 729 (821)
..|..|.++++|++|+|++|++++.+|..|+++++|+.|+|++|++++..|..+. ++|++||+++|++++.+|.. |
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~ 546 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--F 546 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--C
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--h
Confidence 5567799999999999999999999999999999999999999999988887776 89999999999999988854 5
Q ss_pred CCCCCCccCCCCCCCCCCC
Q 041782 730 NTFENSSFEGNPGLCGKPL 748 (821)
Q Consensus 730 ~~~~~~~~~gn~~lc~~~~ 748 (821)
..+....+.|||+.|++++
T Consensus 547 ~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 547 VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp SSCCEEEEEEECCCCSSSC
T ss_pred CCcCEEEecCCCccccccc
Confidence 6777888999999998875
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.8e-50 Score=467.68 Aligned_cols=531 Identities=17% Similarity=0.113 Sum_probs=384.2
Q ss_pred CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782 154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL 233 (821)
Q Consensus 154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 233 (821)
++++.+++.++..+. .+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 14 ~~~~c~~~~l~~ip~----~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPD----DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TEEECTTSCCSSCCT----TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CceEccCCCcccCCC----CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 455555555544322 11 145555556555555555555666666666666666666555555666666666666
Q ss_pred cCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCcee-ecccccccCCCCCCCeEECCCccc
Q 041782 234 KSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG-NVYIEELLPKLKSLIVLFLSANNL 312 (821)
Q Consensus 234 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~l~~l~~L~~L~L~~n~l 312 (821)
++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+| ..+.++++|++|++++|.+
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP--AYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC--GGGGTCTTCCEEECCSSCC
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech--HhHhhcCCCCEEEccCCcc
Confidence 6666665556666666666666666666665554556666666666666666553 122 3356666666666666666
Q ss_pred ceeccccch-hccCC-CeeEEecCCCCCchhhhhhcCCCccceEecccCCCC-CCCCcchhccCCCCeeEEEcCCCCCCC
Q 041782 313 SLITRNTVN-IRLQN-KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIP-GKIPGWLLNVTTGNLQFVNLSYNLITG 389 (821)
Q Consensus 313 ~~~~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~~~~~~L~~L~Ls~n~l~~ 389 (821)
+++.+..+. ...++ .+..+++++|.+..++.......+|+.|++++|.+. +..|..+.++ +.++.+++..+.+.+
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL--AGLHVHRLILGEFKD 243 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTT--TTCEEEEEEEECCTT
T ss_pred eecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccc--ccccccccccccccc
Confidence 665554432 11122 255899999999888776666669999999999887 4566677777 788888886655443
Q ss_pred CCCC-----cccccc--CCccEEEe-ccCcccCcCCCC--CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcc
Q 041782 390 FDRG-----SVVLLW--TDLVTLDL-RSNKLQGPLPIP--PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459 (821)
Q Consensus 390 ~~~~-----~~~~~~--~~L~~L~L-~~n~l~~~~~~~--~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 459 (821)
.... .....+ -.++.+++ ..+.+.+.+|.. ..+++.+++++|.+.. +| .+..+++|++|++++|.+ +
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-S
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-c
Confidence 2211 011111 24667777 667777766653 5689999999999864 55 788999999999999999 6
Q ss_pred cCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC--CchhhCCCCCCCEEEccCCcCcc
Q 041782 460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI--FPSWLGTLPELKVLMLQFNRFHG 537 (821)
Q Consensus 460 ~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~N~l~~ 537 (821)
.+|.. .+++|++|++++|...+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+.+
T Consensus 321 ~lp~~--------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 390 (606)
T 3vq2_A 321 QFPTL--------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390 (606)
T ss_dssp SCCCC--------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE
T ss_pred ccccC--------CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc
Confidence 77732 4799999999999765444 677999999999999999887 47889999999999999999885
Q ss_pred cCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeee
Q 041782 538 EIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAY 617 (821)
Q Consensus 538 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 617 (821)
+|..+ ..+++|+.|++++|++++..|...+..+++|+.++++.+......+
T Consensus 391 -~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------- 441 (606)
T 3vq2_A 391 -MSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-------------------------- 441 (606)
T ss_dssp -ECCCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT--------------------------
T ss_pred -chhhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch--------------------------
Confidence 45444 6799999999999999987775668888888888777554322111
Q ss_pred eEEEEecceeeecccccccccEEEcccccccC-ccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccc
Q 041782 618 SITMVNKGIEMNYGKVSNFLTGIILSNNKLIG-KIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696 (821)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 696 (821)
.....++.|+.|++++|++++ .+|..++++++|++|+|++|++++.+|..|+++++|++|+|++|+++
T Consensus 442 -----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 442 -----------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp -----------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 001124669999999999998 47899999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccCCccEEEcccCcccccCCCC-CCCC-CCCCCccCCCCCCCCCCC
Q 041782 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQG-KQFN-TFENSSFEGNPGLCGKPL 748 (821)
Q Consensus 697 ~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~-~~~~~~~~gn~~lc~~~~ 748 (821)
+.+|..|..+++|++|++++|+++ .+|.. ..+. ++....+.|||+.|+++.
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999999999999 56765 2232 366778899999998765
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-47 Score=439.96 Aligned_cols=492 Identities=21% Similarity=0.198 Sum_probs=318.0
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
++++|+|++|.+++..+ ..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 29 ~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCCEEECCSCCCCEECT---TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccEEEccCCccCccCh---hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 34444444444444443 333444444444444444444444445555555555555555544444455555555555
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCC-CCCccccCCCCcCeeccccCCceeecccccccCCCCCC----CeEE
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG-PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSL----IVLF 306 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L----~~L~ 306 (821)
++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+ ..+..+++| +.|+
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG--GGGHHHHTCTTCCCEEE
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH--HHccchhccchhhhhcc
Confidence 555555544333345555555555555555543 234555555555555555555543221 123334444 4555
Q ss_pred CCCcccceeccccchhccCCCeeEEecCCCCC--chhhhhhcCCCccceEecccCCCCC------CCCcchhccCCCCee
Q 041782 307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNL--KEFLDFLNDQDQLELLDLSANKIPG------KIPGWLLNVTTGNLQ 378 (821)
Q Consensus 307 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l--~~~~~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~~~~~~L~ 378 (821)
+++|.++.+.+..+. ..+|+.+++++|.. ..++..+..++.++.+++....+.. .....+..+..-.++
T Consensus 184 l~~n~l~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 184 LSLNPMNFIQPGAFK---EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp CTTCCCCEECTTTTT---TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cCCCCceecCHHHhc---cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 555555555444432 22455555555533 3455556666666555544322211 111122222112455
Q ss_pred EEEcCCC-CCCCCCCCccccccCCccEEEeccCcccCcCCCC-CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCc
Q 041782 379 FVNLSYN-LITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP-PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNF 456 (821)
Q Consensus 379 ~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 456 (821)
.++++++ .+.+..+. .+..+++|++|++++|.+.+..+.. ..+++.+++++|.+. .+|. ..+++|++|++++|.
T Consensus 261 ~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 261 EFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEETTEEESCSTT-TTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred hhhhhcchhhhhhchh-hhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence 6666665 44444433 3455667777777777666422111 116667777777766 4454 467899999999999
Q ss_pred CcccCCccccCcccccCCCcccEEeccCccccccC--chhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCc
Q 041782 457 LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI--PRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534 (821)
Q Consensus 457 l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~ 534 (821)
+.+..+. ..+++|++|++++|.+++.. |..+..+++|++|++++|++++..+. +..+++|++|++++|.
T Consensus 337 ~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 337 GGNAFSE--------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp SCCBCCC--------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred ccccccc--------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence 8876554 34789999999999988654 77889999999999999999887555 8899999999999999
Q ss_pred CcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccccccccccee
Q 041782 535 FHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYI 614 (821)
Q Consensus 535 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 614 (821)
+.+..+.. ....+++|++|++++|.+++..|.. +..
T Consensus 408 l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~------------------------------------------ 443 (570)
T 2z63_A 408 LKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGI-FNG------------------------------------------ 443 (570)
T ss_dssp EESCTTSC-TTTTCTTCCEEECTTSCCEECCTTT-TTT------------------------------------------
T ss_pred cccccchh-hhhcCCCCCEEeCcCCcccccchhh-hhc------------------------------------------
Confidence 98765522 2266899999999999998665532 211
Q ss_pred eeeeEEEEecceeeecccccccccEEEccccccc-CccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCC
Q 041782 615 YAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI-GKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN 693 (821)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 693 (821)
++.|+.|++++|.++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|++++|
T Consensus 444 -------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 444 -------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp -------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 345899999999998 689999999999999999999999988999999999999999999
Q ss_pred cccccCCCCccccCCccEEEcccCcccccCCCCC
Q 041782 694 NLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGK 727 (821)
Q Consensus 694 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 727 (821)
++++..|..|..+++|++|++++|+++|.+|...
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999988899999999999999999999998754
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-48 Score=449.19 Aligned_cols=501 Identities=21% Similarity=0.233 Sum_probs=362.3
Q ss_pred CccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCC
Q 041782 74 CCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKL 153 (821)
Q Consensus 74 ~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L 153 (821)
.|.|.|+ |+... ++++ .+|. .+. ++|++|+|++|.+++. .|.. +.++++|
T Consensus 3 ~C~~~~~-c~~~~----------~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~-------------~~~l~~L 52 (549)
T 2z81_A 3 SCDASGV-CDGRS----------RSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGD-------------LRACANL 52 (549)
T ss_dssp EECTTSE-EECTT----------SCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSST-------------TSSCTTC
T ss_pred cCCCCce-EECCC----------Cccc-cccc--cCC--CCccEEECcCCccCcc-Chhh-------------hhcCCcc
Confidence 4999999 96542 2332 3343 332 7899999999988531 2333 7888899
Q ss_pred CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEE
Q 041782 154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILS 232 (821)
Q Consensus 154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~ 232 (821)
++|+|++|++++..| ..+.++++|++|++++|.+.+..|..|+++++|++|++++|.+++ ..|..++++++|++|+
T Consensus 53 ~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 53 QVLILKSSRINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp CEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred cEEECCCCCcCccCh---hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 999999999988887 667788889999999998887777778889999999999998886 3567788888999999
Q ss_pred ccCCcCCCCCc-cccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782 233 LKSNQLRGYLP-SQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311 (821)
Q Consensus 233 Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 311 (821)
+++|.+.+.+| ..|.++++|++|++++|.+++..|..++++++|++|+++.|.+.. ++. ..+..+++|++|++++|.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~-~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLE-IFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHH-HHHHSTTTBSEEEEESCB
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cch-hhHhhcccccEEEccCCc
Confidence 98888444444 678888889999999988888888888888889999888887652 222 334568888888888888
Q ss_pred cceeccccch-hccCCCeeEEecCCCCCc-----hhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCC
Q 041782 312 LSLITRNTVN-IRLQNKFVFLGLASCNLK-----EFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYN 385 (821)
Q Consensus 312 l~~~~~~~~~-~~~~~~L~~L~L~~~~l~-----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n 385 (821)
+++....... ...+++|+.|++++|.+. .++..+..+++|+.+++++|.+.+..... .
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~--~-------------- 271 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--P-------------- 271 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC--C--------------
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc--c--------------
Confidence 7765321110 112445555555555441 12223334444555555544433211000 0
Q ss_pred CCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccc
Q 041782 386 LITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCL 465 (821)
Q Consensus 386 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 465 (821)
........+.+++.|++.++.+.... ....++..+...++|++|++++|++. .+|..+
T Consensus 272 -----~~~~~~~~l~~L~~L~l~~~~i~~~~----------------~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 272 -----SESDVVSELGKVETVTIRRLHIPQFY----------------LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp -----CTTTCCCCCTTCCEEEEESCBCSCGG----------------GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred -----cchhhhhhhcccccccccccccchhh----------------hcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 00001234567888888777654211 01123334455678999999999886 555443
Q ss_pred cCcccccCCCcccEEeccCccccccCch---hhcCCCCCCEEeCCCCcCCcCCc--hhhCCCCCCCEEEccCCcCcccCC
Q 041782 466 SNSKIFKNATNLKMIDLSHNLLQGRIPR---SLANCTMLEFLDLGNNQIADIFP--SWLGTLPELKVLMLQFNRFHGEIG 540 (821)
Q Consensus 466 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 540 (821)
+.++++|++|++++|.+++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|
T Consensus 330 -----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 330 -----SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp -----HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred -----HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 23478899999999999877653 36788999999999999987643 56888999999999999988 566
Q ss_pred CCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEE
Q 041782 541 EPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSIT 620 (821)
Q Consensus 541 ~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (821)
..+ ..+++|++|++++|+++ .+|...
T Consensus 404 ~~~--~~~~~L~~L~Ls~N~l~-~l~~~~--------------------------------------------------- 429 (549)
T 2z81_A 404 DSC--QWPEKMRFLNLSSTGIR-VVKTCI--------------------------------------------------- 429 (549)
T ss_dssp SCC--CCCTTCCEEECTTSCCS-CCCTTS---------------------------------------------------
T ss_pred hhh--cccccccEEECCCCCcc-cccchh---------------------------------------------------
Confidence 655 56889999999999986 344210
Q ss_pred EEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCC
Q 041782 621 MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIP 700 (821)
Q Consensus 621 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 700 (821)
.+.|+.|++++|++++.+ .++++|++|+|++|+++ .+|. ...+++|++|+|++|++++.+|
T Consensus 430 -------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 430 -------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp -------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred -------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 124889999999998753 57899999999999999 6776 4789999999999999999999
Q ss_pred CCccccCCccEEEcccCcccccCCCC
Q 041782 701 RQLAELTSLAVFDVSDNNLTGQIPQG 726 (821)
Q Consensus 701 ~~l~~l~~L~~L~ls~N~l~g~iP~~ 726 (821)
..+..+++|++|++++|+++|.+|..
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred HHHhcCcccCEEEecCCCccCCCccH
Confidence 99999999999999999999988843
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-46 Score=431.11 Aligned_cols=498 Identities=23% Similarity=0.208 Sum_probs=334.9
Q ss_pred CEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCC
Q 041782 88 HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH 167 (821)
Q Consensus 88 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~ 167 (821)
+++.|+|+++.+++..+. ++.++++|++|+|++|.+.+ ++... ++++++|++|+|++|.+++..
T Consensus 29 ~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~--i~~~~------------~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT--IEDGA------------YQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp SCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCE--ECTTT------------TTTCTTCCEEECTTCCCCEEC
T ss_pred cccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCc--cCccc------------ccCchhCCEEeCcCCcCCccC
Confidence 566677777766655443 66667777777777776642 22211 566667777777777766666
Q ss_pred CCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCcccc
Q 041782 168 SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQI 246 (821)
Q Consensus 168 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 246 (821)
| ..+..+++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..|..+
T Consensus 93 ~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 93 L---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp T---TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred H---hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 5 455666677777777776655444456667777777777776665 356666777777777777777666656666
Q ss_pred CCCCCC----CEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchh
Q 041782 247 GSLTQL----TALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNI 322 (821)
Q Consensus 247 ~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 322 (821)
+.+++| ++|++++|.+++..|..+... +|++|++++|...... .+..+..++.++.+.+....+....
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~-~~~~~~~l~~l~~~~l~~~~~~~~~------ 241 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEG------ 241 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH-HHHHHHTTTTCEEEEEEEEECCCCS------
T ss_pred cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccc-hhhhhcCccccceeeeccccccCch------
Confidence 666666 667777776666555555544 5667766666433211 1133445555555444322211100
Q ss_pred ccCCCeeEEecCCCCCchhhhhhcCCCccceEecccC-CCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCC
Q 041782 323 RLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSAN-KIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTD 401 (821)
Q Consensus 323 ~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 401 (821)
.++. +....+. .+..+ .++.++++++ .+.+..|..+..+ ++|++|++++|.+++.+.. ...+ +
T Consensus 242 ----~l~~--~~~~~~~----~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~l~~~--~~~~-~ 305 (570)
T 2z63_A 242 ----NLEK--FDKSALE----GLCNL-TIEEFRLAYLDYYLDDIIDLFNCL--TNVSSFSLVSVTIERVKDF--SYNF-G 305 (570)
T ss_dssp ----SCEE--CCTTTTG----GGGGS-EEEEEEEEETTEEESCSTTTTGGG--TTCSEEEEESCEECSCCBC--CSCC-C
T ss_pred ----hhhh--cchhhhc----ccccc-chhhhhhhcchhhhhhchhhhcCc--CcccEEEecCccchhhhhh--hccC-C
Confidence 0000 0000000 11111 2445555555 4455555555555 5666666666666544332 2333 6
Q ss_pred ccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccC--CccccCcccccCCCcccE
Q 041782 402 LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL--PQCLSNSKIFKNATNLKM 479 (821)
Q Consensus 402 L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~~~~~~~l~~L~~ 479 (821)
|++|++++|.+.........+++.+++++|.+.+..+. ..+++|++|++++|++++.. |. .+.++++|++
T Consensus 306 L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~------~~~~~~~L~~ 377 (570)
T 2z63_A 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQ------SDFGTTSLKY 377 (570)
T ss_dssp CSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEH------HHHTCSCCCE
T ss_pred ccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccc------cccccCccCE
Confidence 66666666666533333355666666666666655554 67899999999999998653 33 3456899999
Q ss_pred EeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCc-hhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccC
Q 041782 480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSH 558 (821)
Q Consensus 480 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 558 (821)
|++++|.+.+..+ .+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++
T Consensus 378 L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~ 454 (570)
T 2z63_A 378 LDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAG 454 (570)
T ss_dssp EECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTT
T ss_pred EECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcC
Confidence 9999999986544 49999999999999999998766 578899999999999999998877766 6789999999999
Q ss_pred CcCc-cCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccc
Q 041782 559 NRFS-GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFL 637 (821)
Q Consensus 559 N~l~-g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 637 (821)
|.++ +.+|.. +. .++.|
T Consensus 455 n~l~~~~~p~~-~~-------------------------------------------------------------~l~~L 472 (570)
T 2z63_A 455 NSFQENFLPDI-FT-------------------------------------------------------------ELRNL 472 (570)
T ss_dssp CEEGGGEECSC-CT-------------------------------------------------------------TCTTC
T ss_pred CcCccccchhh-hh-------------------------------------------------------------cccCC
Confidence 9987 455532 11 13458
Q ss_pred cEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCC
Q 041782 638 TGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPR 701 (821)
Q Consensus 638 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 701 (821)
+.|++++|++++..|..|+++++|++|+|++|++++.+|..|+++++|++|++++|++++..|.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999998899999999999999999999999889999999999999999999988775
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-45 Score=421.83 Aligned_cols=469 Identities=21% Similarity=0.215 Sum_probs=369.7
Q ss_pred CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782 87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP 166 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~ 166 (821)
.+++.|+|+++.+++..+. ++.++++|++|+|++|.+.+. .|.. ++++++|++|+|++|.+++.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~-------------~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDA-------------FYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTT-------------TTTCTTCCEEECTTSCCCSC
T ss_pred CCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-Chhh-------------ccccccCCEEECCCCccCcc
Confidence 5799999999999887665 899999999999999998631 2233 88999999999999999998
Q ss_pred CCCCchhccCCCCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcc-hhhhcCCCCCEEEccCCcCCCCCcc
Q 041782 167 HSASFSWIAKQTELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIP-NWLANLNRLTILSLKSNQLRGYLPS 244 (821)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~ 244 (821)
.+ ..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.+| ..|.++++|++|++++|.+++..|.
T Consensus 90 ~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 90 SS---SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CH---HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CH---HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 87 678999999999999999986 467889999999999999999555554 6899999999999999999999999
Q ss_pred ccCCCCCCCEEEccCccCCCCCCcc-ccCCCCcCeeccccCCceeecc-cccccCCCCCCCeEECCCcccceeccccc--
Q 041782 245 QIGSLTQLTALDLSCNQFQGPVPSS-ISELKRLEYLDLHSNNLSGNVY-IEELLPKLKSLIVLFLSANNLSLITRNTV-- 320 (821)
Q Consensus 245 ~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-- 320 (821)
.+.++++|++|++++|.+. .+|.. +..+++|++|++++|++++... .......+++|+.|++++|.+++.....+
T Consensus 167 ~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 9999999999999999987 44544 3579999999999999986321 11234568899999999998876543322
Q ss_pred hhccCCCeeEEecCCCCCchhhh-------hhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCC-
Q 041782 321 NIRLQNKFVFLGLASCNLKEFLD-------FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDR- 392 (821)
Q Consensus 321 ~~~~~~~L~~L~L~~~~l~~~~~-------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~- 392 (821)
....+++|+.+++++|.+..+++ .+..+.+++.|++.++.+ .....
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i--------------------------~~~~~~ 299 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI--------------------------PQFYLF 299 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC--------------------------SCGGGS
T ss_pred Hhhhhccccccccccccccccccccccchhhhhhhccccccccccccc--------------------------chhhhc
Confidence 12356789999999997644321 223344555555554443 22110
Q ss_pred ---CccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhh-hCCCCCcEEEcCCCcCcccCCccccCc
Q 041782 393 ---GSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWL-CNLNSLRVLDLSHNFLSGVLPQCLSNS 468 (821)
Q Consensus 393 ---~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~~ 468 (821)
.......++|++|++++|.+. .+|..+ ..+++|++|++++|++.+.+|...
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n~l~----------------------~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--- 354 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENSKVF----------------------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS--- 354 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESSCCC----------------------CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH---
T ss_pred ccchhhhhhcccceEEEeccCccc----------------------cCCHHHHhcCccccEEEccCCccccccccch---
Confidence 001123456777777777654 455555 578999999999999988764321
Q ss_pred ccccCCCcccEEeccCccccccCc--hhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccC
Q 041782 469 KIFKNATNLKMIDLSHNLLQGRIP--RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF 546 (821)
Q Consensus 469 ~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 546 (821)
..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++. +|..+..+++|++|++++|++.+ ++...
T Consensus 355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--- 429 (549)
T 2z81_A 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRV-VKTCI--- 429 (549)
T ss_dssp TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSC-CCTTS---
T ss_pred hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCccc-ccchh---
Confidence 124568899999999999986532 468899999999999999985 57788899999999999999873 34322
Q ss_pred CCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecce
Q 041782 547 VFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGI 626 (821)
Q Consensus 547 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (821)
.++|++|++++|++++.++
T Consensus 430 -~~~L~~L~Ls~N~l~~~~~------------------------------------------------------------ 448 (549)
T 2z81_A 430 -PQTLEVLDVSNNNLDSFSL------------------------------------------------------------ 448 (549)
T ss_dssp -CTTCSEEECCSSCCSCCCC------------------------------------------------------------
T ss_pred -cCCceEEECCCCChhhhcc------------------------------------------------------------
Confidence 4789999999999985321
Q ss_pred eeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCC
Q 041782 627 EMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIP 700 (821)
Q Consensus 627 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 700 (821)
.++.|+.|+|++|+++ .+|. ...+++|++|+|++|++++.+|..|+.+++|++|++++|++++..|
T Consensus 449 ------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 449 ------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 0234899999999998 6776 5789999999999999999999999999999999999999998776
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=422.48 Aligned_cols=444 Identities=21% Similarity=0.242 Sum_probs=258.7
Q ss_pred CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 230 (821)
++|++|+|++|.+++..| ..+.++++|++|++++|.+.+..|..|.++++|++|++++|+++ .+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT---SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCH---HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccCh---hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence 566666666666665555 45555666666666666665555556666666666666666665 34443 5566666
Q ss_pred EEccCCcCCC-CCccccCCCCCCCEEEccCccCCCCCCccccCCCCc--CeeccccCCc--eeecccccccCCCC-CCCe
Q 041782 231 LSLKSNQLRG-YLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRL--EYLDLHSNNL--SGNVYIEELLPKLK-SLIV 304 (821)
Q Consensus 231 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~l~~l~-~L~~ 304 (821)
|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+ ..+..+. ....
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~--~~l~~l~~~~l~ 169 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLH 169 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCT--TTTTTCCEEEEE
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccc--ccccccccceEE
Confidence 6666666654 345566666666666666665553 234455555 6666666655 32222 1122222 1123
Q ss_pred EECCCcccceeccccchhccCCCeeEEecCCCC-------CchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCe
Q 041782 305 LFLSANNLSLITRNTVNIRLQNKFVFLGLASCN-------LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNL 377 (821)
Q Consensus 305 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~-------l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L 377 (821)
+++++|.+.+..... ....+++|+.+++++|. +......+..+++|+.|++++|.+.+..+..+..
T Consensus 170 l~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~------ 242 (520)
T 2z7x_B 170 IVFPTNKEFHFILDV-SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ------ 242 (520)
T ss_dssp EECCSSSCCCCCCCC-CCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH------
T ss_pred EEeccCcchhhhhhh-hhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH------
Confidence 344444433221111 01123334444444433 1111124445555555555555443221111100
Q ss_pred eEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhh-----hCCCCCcEEEc
Q 041782 378 QFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWL-----CNLNSLRVLDL 452 (821)
Q Consensus 378 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l-----~~l~~L~~L~L 452 (821)
....++|++|++++|++.|. +|..+ .++++|+.+++
T Consensus 243 ------------------~~~~~~L~~L~l~~n~l~~~---------------------~p~~~~~~~~~~l~~L~~l~l 283 (520)
T 2z7x_B 243 ------------------LVWHTTVWYFSISNVKLQGQ---------------------LDFRDFDYSGTSLKALSIHQV 283 (520)
T ss_dssp ------------------HHHTSSCSEEEEEEEEEESC---------------------CCCCCCCCCSCCCCEEEEEEE
T ss_pred ------------------HhhhCcccEEEeecccccCc---------------------cccchhhcccccCceeEeccc
Confidence 00123455555555554433 33333 55666777777
Q ss_pred CCCcCcccCC-ccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEcc
Q 041782 453 SHNFLSGVLP-QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQ 531 (821)
Q Consensus 453 s~n~l~~~~p-~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 531 (821)
++|.+ .+| ..+.. +....+|+.|++++|.+.+.. .+..+++|++|++++|++++..|..++.+++|++|+++
T Consensus 284 ~~n~~--~~p~~~~~~---~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 284 VSDVF--GFPQSYIYE---IFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EECCC--CSCTHHHHH---HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred cccce--ecchhhhhc---ccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 77766 344 22111 000145777777777765322 12566777777777777777777777777777777777
Q ss_pred CCcCcc--cCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccccccc
Q 041782 532 FNRFHG--EIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDY 609 (821)
Q Consensus 532 ~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 609 (821)
+|++.+ .+|..+ ..+++|++|++++|++++.+|...+..
T Consensus 357 ~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~~------------------------------------- 397 (520)
T 2z7x_B 357 MNQLKELSKIAEMT--TQMKSLQQLDISQNSVSYDEKKGDCSW------------------------------------- 397 (520)
T ss_dssp SSCCCBHHHHHHHH--TTCTTCCEEECCSSCCBCCGGGCSCCC-------------------------------------
T ss_pred CCccCccccchHHH--hhCCCCCEEECCCCcCCcccccchhcc-------------------------------------
Confidence 777764 333323 457778888888888776566432111
Q ss_pred ccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEe
Q 041782 610 SLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLD 689 (821)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 689 (821)
++.|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|+
T Consensus 398 ------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 398 ------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450 (520)
T ss_dssp ------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred ------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence 23477888888888877777665 78999999999998 7888778999999999
Q ss_pred CCCCcccccCCCC-ccccCCccEEEcccCcccccCCC
Q 041782 690 LSNNNLSGEIPRQ-LAELTSLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 690 Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~ 725 (821)
|++|++++ +|.. +..+++|++|++++|+++|.++.
T Consensus 451 L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 451 VASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 99999985 5554 88899999999999999987763
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.1e-43 Score=411.20 Aligned_cols=516 Identities=21% Similarity=0.145 Sum_probs=297.6
Q ss_pred CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG 192 (821)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 192 (821)
+++++|||++|.++. +|+.- |.++++|++|||++|+|++..+ ..|.++++|++|+|++|++.+
T Consensus 52 ~~~~~LdLs~N~i~~--l~~~~------------f~~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH--LGSYS------------FFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp TTCCEEECTTSCCCE--ECTTT------------TTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCE
T ss_pred cCCCEEEeeCCCCCC--CCHHH------------HhCCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEccCCcCCC
Confidence 367777777777742 43221 6677777777777777776666 455666777777777777665
Q ss_pred cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCC-CCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782 193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG-YLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271 (821)
Q Consensus 193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 271 (821)
..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 555566777777777777777765555566777777777777777654 3456666677777777777777666666665
Q ss_pred CCCCcC----eeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC-------ch
Q 041782 272 ELKRLE----YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL-------KE 340 (821)
Q Consensus 272 ~l~~L~----~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l-------~~ 340 (821)
.+.+++ .++++.|.+....+ . ......++.+++.+|........ .....+..++...+..+.. ..
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~--~-~~~~~~~~~l~l~~n~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQP--G-AFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECT--T-TTTTCEEEEEEEESCCSSHHHHH-HHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred chhhhhhhhhhhhcccCcccccCc--c-cccchhhhhhhhhcccccccccc-hhhcCCcccccccccccccccccccccc
Confidence 544433 45556665553221 1 22233344555555433211100 0011223333322211111 01
Q ss_pred hhhhhcCCCccceEecccCCCCCC---CCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCC
Q 041782 341 FLDFLNDQDQLELLDLSANKIPGK---IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP 417 (821)
Q Consensus 341 ~~~~l~~l~~L~~L~Ls~n~l~~~---~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 417 (821)
....+.....+...++..+..... .+..+... .+++.+++.++.+..... .....+++.|++.+|.+.+..+
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL--TNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG--TTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCC
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhh--cccccccccccccccccc---cccchhhhhhhcccccccCcCc
Confidence 111222233334444333322211 11222233 456666666666554432 2334566777777776665555
Q ss_pred CCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcC
Q 041782 418 IPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLAN 497 (821)
Q Consensus 418 ~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 497 (821)
.....++.+.+..|...... ....+++|+.|++++|.+....+.. ..+..+.+|++|++..|.+.. .+..+..
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~----~~~~~~~~L~~L~~~~~~~~~-~~~~~~~ 418 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCS----QSDFGTISLKYLDLSFNGVIT-MSSNFLG 418 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECC----HHHHSCSCCCEEECCSCSEEE-ECSCCTT
T ss_pred ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccc----cchhhhhhhhhhhcccccccc-ccccccc
Confidence 44555666666666554322 2335666666666666654321110 112235566666666666552 3445566
Q ss_pred CCCCCEEeCCCCcCCcCCc-hhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchh
Q 041782 498 CTMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI 576 (821)
Q Consensus 498 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l 576 (821)
+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+..+ ..+++|+.|++++|.+.+.+++..|.
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~----- 491 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFT----- 491 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCT-----
T ss_pred cccccchhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhh-----
Confidence 6666666666665544432 345566666666666666665555444 44666666666666543322211111
Q ss_pred hhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccc
Q 041782 577 KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSIS 656 (821)
Q Consensus 577 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 656 (821)
.++.|+.|||++|++++..|..|+
T Consensus 492 --------------------------------------------------------~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 492 --------------------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp --------------------------------------------------------TCTTCCEEECTTSCCCEECTTTTT
T ss_pred --------------------------------------------------------hccccCEEECCCCccCCcChHHHc
Confidence 133477788888888877777888
Q ss_pred cCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCcccc-CCccEEEcccCcccccCC
Q 041782 657 ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAEL-TSLAVFDVSDNNLTGQIP 724 (821)
Q Consensus 657 ~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP 724 (821)
++++|++|+|++|++++..|..|+++++|++|||++|+|++..|..|..+ ++|++|++++|++++.+.
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 88888888888888887777778888888888888888888888877777 578888888888877664
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-44 Score=409.66 Aligned_cols=453 Identities=18% Similarity=0.234 Sum_probs=344.7
Q ss_pred EEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCC-ccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCC
Q 041782 90 IKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIP-SEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHS 168 (821)
Q Consensus 90 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp-~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~ 168 (821)
+.||+++++++ .+|. .+. ++|++|+|++|.+.+ ++ .. +.++++|++|+|++|++++..|
T Consensus 3 ~~l~ls~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~--~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~ 62 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK--DLS--QKTTILNISQNYISE--LWTSD-------------ILSLSKLRILIISHNRIQYLDI 62 (520)
T ss_dssp CEEECTTSCCS-SCCC--SCC--TTCSEEECCSSCCCC--CCHHH-------------HTTCTTCCEEECCSSCCCEEEG
T ss_pred ceEecCCCCcc-cccc--ccc--ccccEEECCCCcccc--cChhh-------------ccccccccEEecCCCccCCcCh
Confidence 36899999988 4654 454 899999999999864 44 34 7889999999999999999888
Q ss_pred CCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCccccC
Q 041782 169 ASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQIG 247 (821)
Q Consensus 169 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 247 (821)
..++++++|++|++++|.+. .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+.
T Consensus 63 ---~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~ 133 (520)
T 2z7x_B 63 ---SVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL 133 (520)
T ss_dssp ---GGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG
T ss_pred ---HHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcc
Confidence 77889999999999999997 57766 89999999999999987 578999999999999999999986 4577
Q ss_pred CCCCC--CEEEccCccC--CCCCCccccCCC-CcCeeccccCCceeecccccccCCCCCCCeEECCCcc-------ccee
Q 041782 248 SLTQL--TALDLSCNQF--QGPVPSSISELK-RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN-------LSLI 315 (821)
Q Consensus 248 ~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~ 315 (821)
.+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++. ..+..+++|+.|++++|. +.+.
T Consensus 134 ~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 212 (520)
T 2z7x_B 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD-VSVKTVANLELSNIKCVLEDNKCSYFLSI 212 (520)
T ss_dssp GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCC-CCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhh-hhhhcccceeeccccccccccccceeecc
Confidence 78888 9999999999 778888887766 344678888888876665 557889999999999986 4433
Q ss_pred ccccchhccCCCeeEEecCCCCCch-----hhhhhcCCCccceEecccCCCCCCCCcch-----hccCCCCeeEEEcCCC
Q 041782 316 TRNTVNIRLQNKFVFLGLASCNLKE-----FLDFLNDQDQLELLDLSANKIPGKIPGWL-----LNVTTGNLQFVNLSYN 385 (821)
Q Consensus 316 ~~~~~~~~~~~~L~~L~L~~~~l~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~~~~~~L~~L~Ls~n 385 (821)
.+ ....+++|+.|++++|.+.. ++..+ ..++|++|++++|++.+.+|..+ ..+ ++|+.+++++|
T Consensus 213 ~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l--~~L~~l~l~~n 286 (520)
T 2z7x_B 213 LA---KLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSL--KALSIHQVVSD 286 (520)
T ss_dssp HH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCC--CEEEEEEEEEC
T ss_pred hh---hhccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccC--ceeEecccccc
Confidence 32 23467899999999887732 22222 24689999999999988888876 344 44444444444
Q ss_pred CCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCC---CCCcEEEcCCCcCcccCC
Q 041782 386 LITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNL---NSLRVLDLSHNFLSGVLP 462 (821)
Q Consensus 386 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~p 462 (821)
.+ ..+. ..+..+ .+|+.|++++|.+....
T Consensus 287 ~~-~~p~----------------------------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~- 318 (520)
T 2z7x_B 287 VF-GFPQ----------------------------------------------SYIYEIFSNMNIKNFTVSGTRMVHML- 318 (520)
T ss_dssp CC-CSCT----------------------------------------------HHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred ce-ecch----------------------------------------------hhhhcccccCceeEEEcCCCcccccc-
Confidence 44 1110 122222 45677777776665331
Q ss_pred ccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCc--CCchhhCCCCCCCEEEccCCcCcccCC
Q 041782 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIAD--IFPSWLGTLPELKVLMLQFNRFHGEIG 540 (821)
Q Consensus 463 ~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~ 540 (821)
.+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..++.+++|++|++++|++.+.+|
T Consensus 319 -------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 319 -------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp -------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred -------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 01346777788888888777777777788888888888888876 345677888888888888888876555
Q ss_pred CCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEE
Q 041782 541 EPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSIT 620 (821)
Q Consensus 541 ~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (821)
... ...+++|++|++++|++++.+|...
T Consensus 392 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l--------------------------------------------------- 419 (520)
T 2z7x_B 392 KGD-CSWTKSLLSLNMSSNILTDTIFRCL--------------------------------------------------- 419 (520)
T ss_dssp GCS-CCCCTTCCEEECCSSCCCGGGGGSC---------------------------------------------------
T ss_pred cch-hccCccCCEEECcCCCCCcchhhhh---------------------------------------------------
Confidence 432 1457888899999988876555321
Q ss_pred EEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhh-hhcCccCCCeEeCCCCcccccC
Q 041782 621 MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNNLSGEI 699 (821)
Q Consensus 621 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~~ 699 (821)
.+.|+.|++++|+++ .+|..+.++++|++|+|++|++++ +|. .|..+++|++|++++|++++..
T Consensus 420 -------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 420 -------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp -------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred -------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccC
Confidence 123888999999998 788888899999999999999994 555 4889999999999999998754
Q ss_pred C
Q 041782 700 P 700 (821)
Q Consensus 700 p 700 (821)
+
T Consensus 485 ~ 485 (520)
T 2z7x_B 485 P 485 (520)
T ss_dssp H
T ss_pred C
Confidence 4
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-45 Score=425.05 Aligned_cols=461 Identities=18% Similarity=0.215 Sum_probs=338.5
Q ss_pred CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCC------C------CCCCCchhccCCCCC
Q 041782 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS------S------PHSASFSWIAKQTEL 180 (821)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~------~------~~~~~~~~l~~l~~L 180 (821)
.+++.|+|+++.+.+ .+|+. ++++++|++|+|++|.+. + .+| ... +..|
T Consensus 81 ~~V~~L~L~~~~l~g-~lp~~-------------l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~---~~~--~~~l 141 (636)
T 4eco_A 81 GRVTGLSLEGFGASG-RVPDA-------------IGQLTELEVLALGSHGEKVNERLFGPKGISANMS---DEQ--KQKM 141 (636)
T ss_dssp CCEEEEECTTSCCEE-EECGG-------------GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC---HHH--HHHH
T ss_pred CCEEEEEecCcccCC-cCChH-------------HhcCccceEEECcCCccccCCccccccccccCch---HHH--HHHH
Confidence 589999999998864 46666 788999999999999762 2 122 111 3455
Q ss_pred CEEecCCccccccCCccccC-CCCCCEEEccCCcCCCCcchhhhcCCCCCEEEcc--CCcCCCCCccccCCCCCCCEEEc
Q 041782 181 SWLALANINLIGEFPSWLMN-LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLK--SNQLRGYLPSQIGSLTQLTALDL 257 (821)
Q Consensus 181 ~~L~L~~n~~~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L 257 (821)
+ ++++++.+.+.+|..+.. +..+..+++....+.. .....++.+.+. .|++++ +|..++++++|++|++
T Consensus 142 ~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~L 213 (636)
T 4eco_A 142 R-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYM 213 (636)
T ss_dssp H-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEE
T ss_pred H-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEEC
Confidence 5 666666666665555442 1222222222222211 111233333333 578888 8999999999999999
Q ss_pred cCccCCCC-----------------CCcccc--CCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc-cceecc
Q 041782 258 SCNQFQGP-----------------VPSSIS--ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN-LSLITR 317 (821)
Q Consensus 258 s~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 317 (821)
++|.+++. +|..++ ++++|++|++++|.+.+.+|. .+.++++|++|++++|. +++
T Consensus 214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~l~~--- 288 (636)
T 4eco_A 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISG--- 288 (636)
T ss_dssp ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSSCCEEECTTCTTSCH---
T ss_pred cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH--HHhcCCCCCEEECcCCCCCcc---
Confidence 99999975 888888 899999999999988877663 47778888888777776 553
Q ss_pred ccchhccCCCeeEEecCCCCCchhhhhhcCC------CccceEecccCCCCCCCCc--chhccCCCCeeEEEcCCCCCCC
Q 041782 318 NTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ------DQLELLDLSANKIPGKIPG--WLLNVTTGNLQFVNLSYNLITG 389 (821)
Q Consensus 318 ~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l------~~L~~L~Ls~n~l~~~~p~--~l~~~~~~~L~~L~Ls~n~l~~ 389 (821)
..+|..++.+ ++|++|++++|+++ .+|. .+..+
T Consensus 289 ---------------------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l----------------- 329 (636)
T 4eco_A 289 ---------------------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM----------------- 329 (636)
T ss_dssp ---------------------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-----------------
T ss_pred ---------------------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-----------------
Confidence 0244444443 67777777777776 5665 55544
Q ss_pred CCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcc
Q 041782 390 FDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469 (821)
Q Consensus 390 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~ 469 (821)
++|++|++++|.+.| .+| .+..+++|++|++++|+++ .+|..+.
T Consensus 330 ----------~~L~~L~L~~N~l~g---------------------~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~--- 373 (636)
T 4eco_A 330 ----------KKLGMLECLYNQLEG---------------------KLP-AFGSEIKLASLNLAYNQIT-EIPANFC--- 373 (636)
T ss_dssp ----------TTCCEEECCSCCCEE---------------------ECC-CCEEEEEESEEECCSSEEE-ECCTTSE---
T ss_pred ----------CCCCEEeCcCCcCcc---------------------chh-hhCCCCCCCEEECCCCccc-cccHhhh---
Confidence 444555554444433 333 4666788999999999998 6776543
Q ss_pred cccCCCc-ccEEeccCccccccCchhhcCCC--CCCEEeCCCCcCCcCCchhhC-------CCCCCCEEEccCCcCcccC
Q 041782 470 IFKNATN-LKMIDLSHNLLQGRIPRSLANCT--MLEFLDLGNNQIADIFPSWLG-------TLPELKVLMLQFNRFHGEI 539 (821)
Q Consensus 470 ~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~N~l~~~~ 539 (821)
.+++ |++|++++|.++ .+|..+..++ +|++|++++|++++..|..+. .+++|++|++++|++. .+
T Consensus 374 ---~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l 448 (636)
T 4eco_A 374 ---GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KF 448 (636)
T ss_dssp ---EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SC
T ss_pred ---hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cC
Confidence 4678 999999999998 7888877655 899999999999999888888 7889999999999998 45
Q ss_pred CCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeE
Q 041782 540 GEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSI 619 (821)
Q Consensus 540 ~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 619 (821)
|... ...+++|++|+|++|+++ .+|...+.....
T Consensus 449 p~~~-~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~-------------------------------------------- 482 (636)
T 4eco_A 449 PKEL-FSTGSPLSSINLMGNMLT-EIPKNSLKDENE-------------------------------------------- 482 (636)
T ss_dssp CTHH-HHTTCCCSEEECCSSCCS-BCCSSSSEETTE--------------------------------------------
T ss_pred CHHH-HccCCCCCEEECCCCCCC-CcCHHHhccccc--------------------------------------------
Confidence 5432 134789999999999998 777653321100
Q ss_pred EEEecceeeecccccccccEEEcccccccCccccccc--cCCCCCEEeCCCcccCcchhhhhcCccCCCeEeC------C
Q 041782 620 TMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSIS--ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDL------S 691 (821)
Q Consensus 620 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~--~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s 691 (821)
....++.|+.|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+.++++|++|+| +
T Consensus 483 ----------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 483 ----------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp ----------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred ----------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 0001235999999999999 7888887 99999999999999997 8999999999999999 5
Q ss_pred CCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCC
Q 041782 692 NNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCG 745 (821)
Q Consensus 692 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~ 745 (821)
+|++.+.+|..+..+++|++|++++|++ +.+|... +.++....+.+|+..|-
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 6889999999999999999999999999 7889763 36777788889987763
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.1e-43 Score=413.09 Aligned_cols=367 Identities=21% Similarity=0.291 Sum_probs=210.9
Q ss_pred CcCCCCcchhhhcCCCCCEEEccCCcCCC-----------------CCccccC--CCCCCCEEEccCccCCCCCCccccC
Q 041782 212 NQLTGPIPNWLANLNRLTILSLKSNQLRG-----------------YLPSQIG--SLTQLTALDLSCNQFQGPVPSSISE 272 (821)
Q Consensus 212 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~ 272 (821)
|.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 66665 67777777777777777777776 2566655 6666666666666666666666666
Q ss_pred CCCcCeeccccCC-cee-ecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhh--hhcCC
Q 041782 273 LKRLEYLDLHSNN-LSG-NVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD--FLNDQ 348 (821)
Q Consensus 273 l~~L~~L~L~~n~-l~~-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--~l~~l 348 (821)
+++|++|++++|+ +++ .+|. . +..++ .....+++|+.|++++|.+..+|. .+..+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~-~-i~~L~-------------------~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L 572 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKA-D-WTRLA-------------------DDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHH-H-HHHHH-------------------HCTTTTTTCCEEECCSSCCCBCCCHHHHTTC
T ss_pred CCCCCEEECcCCCCcccccchH-H-HHhhh-------------------hcccccCCccEEEeeCCcCCccCChhhhhcC
Confidence 6666666666665 554 3332 1 11111 000012233333333333333444 45555
Q ss_pred CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782 349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV 428 (821)
Q Consensus 349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l 428 (821)
++|+.|++++|++. .+| .+..+ ++|+.|++++|.++.
T Consensus 573 ~~L~~L~Ls~N~l~-~lp-~~~~L--~~L~~L~Ls~N~l~~--------------------------------------- 609 (876)
T 4ecn_A 573 VKLGLLDCVHNKVR-HLE-AFGTN--VKLTDLKLDYNQIEE--------------------------------------- 609 (876)
T ss_dssp TTCCEEECTTSCCC-BCC-CCCTT--SEESEEECCSSCCSC---------------------------------------
T ss_pred CCCCEEECCCCCcc-cch-hhcCC--CcceEEECcCCcccc---------------------------------------
Confidence 55666666665555 444 44444 444555554444442
Q ss_pred cCCccCCCCchhhhCCCC-CcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchh---hc--CCCCCC
Q 041782 429 SNNLLTGKLAPWLCNLNS-LRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS---LA--NCTMLE 502 (821)
Q Consensus 429 ~~n~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~--~l~~L~ 502 (821)
+|..+.++++ |++|++++|+++ .+|..+.. ...++|+.|++++|.+.+.+|.. +. .+++|+
T Consensus 610 --------lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~----~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 610 --------IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA----KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp --------CCTTSCEECTTCCEEECCSSCCC-SCCSCCCT----TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred --------chHHHhhccccCCEEECcCCCCC-cCchhhhc----cccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 2333444454 555555555555 44433221 01223555555555555443321 11 223566
Q ss_pred EEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCcc------CCCCCCcEEEccCCcCccCCChhhhhccchh
Q 041782 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTG------FVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI 576 (821)
Q Consensus 503 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~------~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l 576 (821)
.|++++|+++.+.+..+..+++|+.|+|++|++. .+|..... ..+++|+.|+|++|+++ .+|..++.
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~----- 749 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA----- 749 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-----
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-----
Confidence 6666666666443333345666666666666665 44433211 12337777888887776 56643210
Q ss_pred hhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccc
Q 041782 577 KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSIS 656 (821)
Q Consensus 577 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 656 (821)
..++.|+.|+|++|++++ +|..+.
T Consensus 750 -------------------------------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~ 773 (876)
T 4ecn_A 750 -------------------------------------------------------TTLPYLSNMDVSYNCFSS-FPTQPL 773 (876)
T ss_dssp -------------------------------------------------------TTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred -------------------------------------------------------ccCCCcCEEEeCCCCCCc-cchhhh
Confidence 002347778888888876 677777
Q ss_pred cCCCCCEEeCCC------cccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCccccc
Q 041782 657 ELKGLNCLNLSG------NNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQ 722 (821)
Q Consensus 657 ~L~~L~~L~Ls~------N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 722 (821)
++++|+.|+|++ |++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++...
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 888888888865 778888888888888888888888888 67887765 5888888888887643
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2e-41 Score=397.66 Aligned_cols=510 Identities=21% Similarity=0.197 Sum_probs=396.7
Q ss_pred CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782 87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP 166 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~ 166 (821)
..++.|||+++.+++..+. +|.++++|++|||++|.++. +|+.. |.++++|++|+|++|++++.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~--i~~~~------------f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT--IEDGA------------YQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCE--ECTTT------------TTTCTTCCEEECTTCCCCEE
T ss_pred cCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCC--cChhH------------hcCCCCCCEEEccCCcCCCC
Confidence 3689999999999876544 89999999999999999863 54432 88999999999999999998
Q ss_pred CCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCccc
Q 041782 167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQ 245 (821)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 245 (821)
.+ ..|.++++|++|++++|++.+..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..|..
T Consensus 116 ~~---~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 116 AL---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CG---GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CH---HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 87 678899999999999999988777789999999999999999976 46889999999999999999999888888
Q ss_pred cCCCCCC----CEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccce------e
Q 041782 246 IGSLTQL----TALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL------I 315 (821)
Q Consensus 246 l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~------~ 315 (821)
+..+.++ ..++++.|.+....+. ......++.+++.+|.....+.. ..+..+..++...+..+.... .
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHH-HHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccc-hhhcCCcccccccccccccccccccccc
Confidence 8765544 4789999999855444 44455678889988876543333 446677777766654432221 1
Q ss_pred ccccchhccCCCeeEEecCCCCC----chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782 316 TRNTVNIRLQNKFVFLGLASCNL----KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD 391 (821)
Q Consensus 316 ~~~~~~~~~~~~L~~L~L~~~~l----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~ 391 (821)
....+ .....+....+..+.. ...+..+....+++.+++.++.+....+ +... ..++.|++.+|.+....
T Consensus 271 ~~~~~--~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~--~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 271 DKSAL--EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN--FGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CTTTT--GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSC--CCCSEEEEESCEESSCC
T ss_pred ccccc--ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccc--hhhhhhhcccccccCcC
Confidence 11111 1233344443333222 3334455666778888888877654322 3333 67888888888887765
Q ss_pred CCccccccCCccEEEeccCcccCcCCCC-CcccceeeccCCccC--CCCchhhhCCCCCcEEEcCCCcCcccCCccccCc
Q 041782 392 RGSVVLLWTDLVTLDLRSNKLQGPLPIP-PESTIHYLVSNNLLT--GKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS 468 (821)
Q Consensus 392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~l~l~~n~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~ 468 (821)
.. .+..|+.+++..|......... .++++.++++.|.+. +..+..+..+.+|+.+++..|.+....+
T Consensus 345 ~~----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~------ 414 (635)
T 4g8a_A 345 TL----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS------ 414 (635)
T ss_dssp CC----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS------
T ss_pred cc----cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc------
Confidence 43 4577888888888776654433 567888888888775 3456777889999999999998775433
Q ss_pred ccccCCCcccEEeccCccccccCc-hhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcc-cCCCCCccC
Q 041782 469 KIFKNATNLKMIDLSHNLLQGRIP-RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHG-EIGEPDTGF 546 (821)
Q Consensus 469 ~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~ 546 (821)
.+..+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+..+..+++|++|++++|.+.. ..|..+ .
T Consensus 415 -~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~--~ 491 (635)
T 4g8a_A 415 -NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--T 491 (635)
T ss_dssp -CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--T
T ss_pred -cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--h
Confidence 24558999999999888765544 568899999999999999999999999999999999999998654 455555 6
Q ss_pred CCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecce
Q 041782 547 VFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGI 626 (821)
Q Consensus 547 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (821)
.+++|++|+|++|++++..|.. |..
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~-f~~------------------------------------------------------ 516 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTA-FNS------------------------------------------------------ 516 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTT-TTT------------------------------------------------------
T ss_pred hccccCEEECCCCccCCcChHH-HcC------------------------------------------------------
Confidence 7899999999999998655532 322
Q ss_pred eeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCc-cCCCeEeCCCCccccc
Q 041782 627 EMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL-TVLESLDLSNNNLSGE 698 (821)
Q Consensus 627 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ 698 (821)
++.|+.|+|++|++++..|..|.++++|++|+|++|++++.+|+.|..+ ++|++|+|++|+++..
T Consensus 517 -------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 517 -------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp -------CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred -------CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 3348999999999999999999999999999999999999999999998 6899999999999863
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-42 Score=398.12 Aligned_cols=471 Identities=20% Similarity=0.243 Sum_probs=277.1
Q ss_pred EEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCC-ccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCC
Q 041782 90 IKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIP-SEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHS 168 (821)
Q Consensus 90 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp-~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~ 168 (821)
+.++++++++++ +|. .+. ++|++|+|++|.+.+ +| .. +.++++|++|+|++|.+++..|
T Consensus 34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~--~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~~ 93 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISE--LRMPD-------------ISFLSELRVLRLSHNRIRSLDF 93 (562)
T ss_dssp CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCC--CCGGG-------------TTTCTTCCEEECCSCCCCEECT
T ss_pred cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCccc--cChhh-------------hccCCCccEEECCCCCCCcCCH
Confidence 678888888775 554 443 788888888888753 44 23 7788888888888888888777
Q ss_pred CCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCccccC
Q 041782 169 ASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQIG 247 (821)
Q Consensus 169 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 247 (821)
..+.++++|++|++++|.+. .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++. .+.
T Consensus 94 ---~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~ 164 (562)
T 3a79_B 94 ---HVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL 164 (562)
T ss_dssp ---TTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTG
T ss_pred ---HHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chh
Confidence 66677888888888888876 56665 78888888888888876 3457788888888888888887753 344
Q ss_pred CCCCC--CEEEccCccC--CCCCCccccCCC--CcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccch
Q 041782 248 SLTQL--TALDLSCNQF--QGPVPSSISELK--RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN 321 (821)
Q Consensus 248 ~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~--~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 321 (821)
.+++| ++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++. ..+..+++|+.+++++|.....
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~------ 236 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVN-MSVNALGHLQLSNIKLNDENCQ------ 236 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCE-EEESSEEEEEEEEEECCSTTHH------
T ss_pred hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhh-hcccccceEEEecccccccccc------
Confidence 44455 8888888887 777777776554 23 456677766654443 3355556666666655531100
Q ss_pred hccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCC
Q 041782 322 IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTD 401 (821)
Q Consensus 322 ~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 401 (821)
.+......+..+++|+.++++++.+.+.....+.. ....++
T Consensus 237 ---------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~------------------------~~~~~~ 277 (562)
T 3a79_B 237 ---------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ------------------------FFWPRP 277 (562)
T ss_dssp ---------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH------------------------HHTTSS
T ss_pred ---------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH------------------------hhhccc
Confidence 01122334556666666666665544211111000 001123
Q ss_pred ccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCcc-ccCcccccCCCcccEE
Q 041782 402 LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC-LSNSKIFKNATNLKMI 480 (821)
Q Consensus 402 L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~~~l~~L~~L 480 (821)
|++|++++|.+.|.+|.... .....+++.|+.+++..+.+ .+|.. +.. +....+|++|
T Consensus 278 L~~L~l~~n~l~~~ip~~~~----------------~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~---~~~~~~L~~L 336 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEF----------------TYSETALKSLMIEHVKNQVF--LFSKEALYS---VFAEMNIKML 336 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCC----------------CCCSCSCCEEEEEEEEECCC--SSCHHHHHH---HHHTCCCSEE
T ss_pred ccEEEEeccEeeccccchhh----------------hcccccchheehhhccccee--ecChhhhhh---hhccCcceEE
Confidence 44444444443332222100 00002223333333333333 12210 000 0001235555
Q ss_pred eccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCccc--CCCCCccCCCCCCcEEEccC
Q 041782 481 DLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGE--IGEPDTGFVFPKLRIIDLSH 558 (821)
Q Consensus 481 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~ 558 (821)
++++|.+.... ....+++|++|++++|++++..|..++.+++|++|++++|++.+. +|..+ ..+++|++|++++
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~l~~L~~L~l~~ 412 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT--KNMSSLETLDVSL 412 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT--TTCTTCCEEECTT
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh--cCCCCCCEEECCC
Confidence 55555543211 113455555555555555555555555555566666655555531 11222 4456666666666
Q ss_pred CcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeeccccccccc
Q 041782 559 NRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLT 638 (821)
Q Consensus 559 N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 638 (821)
|++++.+|...+.. ++.|+
T Consensus 413 N~l~~~~~~~~~~~-------------------------------------------------------------l~~L~ 431 (562)
T 3a79_B 413 NSLNSHAYDRTCAW-------------------------------------------------------------AESIL 431 (562)
T ss_dssp SCCBSCCSSCCCCC-------------------------------------------------------------CTTCC
T ss_pred CcCCCccChhhhcC-------------------------------------------------------------cccCC
Confidence 66665455332111 22366
Q ss_pred EEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCC-ccccCCccEEEcccC
Q 041782 639 GIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQ-LAELTSLAVFDVSDN 717 (821)
Q Consensus 639 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N 717 (821)
.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCC
Confidence 677777777766666554 67888888888888 677766788888888888888884 5554 888888999999999
Q ss_pred cccccCCCC
Q 041782 718 NLTGQIPQG 726 (821)
Q Consensus 718 ~l~g~iP~~ 726 (821)
+++|.+|..
T Consensus 508 ~~~c~c~~~ 516 (562)
T 3a79_B 508 PWDCTCPGI 516 (562)
T ss_dssp CBCCCHHHH
T ss_pred CcCCCcchH
Confidence 988877643
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.9e-41 Score=387.99 Aligned_cols=443 Identities=17% Similarity=0.204 Sum_probs=330.7
Q ss_pred CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782 87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP 166 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~ 166 (821)
.+++.|+|+++.+.+..+. ++.++++|++|+|++|.+++. .|.. ++++++|++|+|++|.++..
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~-------------~~~l~~L~~L~Ls~N~l~~l 115 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHV-------------FLFNQDLEYLDVSHNRLQNI 115 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTT-------------TTTCTTCCEEECTTSCCCEE
T ss_pred CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHH-------------hCCCCCCCEEECCCCcCCcc
Confidence 5799999999999877655 899999999999999998631 2333 88999999999999999954
Q ss_pred CCCCchhccCCCCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC--CEEEccCCcC--CCC
Q 041782 167 HSASFSWIAKQTELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL--TILSLKSNQL--RGY 241 (821)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L--~~L~Ls~n~l--~~~ 241 (821)
.+ . .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++.
T Consensus 116 p~----~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 116 SC----C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp CS----C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred Cc----c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence 43 2 79999999999999987 5678999999999999999999864 45555666 9999999999 888
Q ss_pred CccccCCCC--CCCEEEccCccCCCCCCc-cccCCCCcCeeccccCC-----ceeecccccccCCCCCCCeEECCCcccc
Q 041782 242 LPSQIGSLT--QLTALDLSCNQFQGPVPS-SISELKRLEYLDLHSNN-----LSGNVYIEELLPKLKSLIVLFLSANNLS 313 (821)
Q Consensus 242 ~p~~l~~l~--~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~-----l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 313 (821)
.|..+..+. .+ .+++++|.+.+.++. .+.++++|+.|++++|+ +.+.+ ..+..+++|+.++++++.+.
T Consensus 187 ~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~---~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 187 ETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL---SELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp SCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH---HHHHSCSSCEEEEEEEEEEC
T ss_pred CcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH---HHHhccCcceEEEecCCcCc
Confidence 888887765 33 568889988876654 45689999999999985 22222 23677888888887776554
Q ss_pred eeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCC
Q 041782 314 LITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRG 393 (821)
Q Consensus 314 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~ 393 (821)
+. .+..++..+. .++|++|++++|.+.+.+|..+.....
T Consensus 263 ~~---------------------~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~------------------- 301 (562)
T 3a79_B 263 WK---------------------CSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSE------------------- 301 (562)
T ss_dssp HH---------------------HHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCS-------------------
T ss_pred HH---------------------HHHHHHHhhh-cccccEEEEeccEeeccccchhhhccc-------------------
Confidence 32 1123333332 358899999999988888876522110
Q ss_pred ccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCc-hhhh---CCCCCcEEEcCCCcCcccCCccccCcc
Q 041782 394 SVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLA-PWLC---NLNSLRVLDLSHNFLSGVLPQCLSNSK 469 (821)
Q Consensus 394 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~-~~l~---~l~~L~~L~Ls~n~l~~~~p~~l~~~~ 469 (821)
..++.|+.+++..+.+ .+| ..+. ...+|++|++++|.+....
T Consensus 302 ---~~L~~L~~~~~~~~~~-----------------------~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-------- 347 (562)
T 3a79_B 302 ---TALKSLMIEHVKNQVF-----------------------LFSKEALYSVFAEMNIKMLSISDTPFIHMV-------- 347 (562)
T ss_dssp ---CSCCEEEEEEEEECCC-----------------------SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--------
T ss_pred ---ccchheehhhccccee-----------------------ecChhhhhhhhccCcceEEEccCCCccccc--------
Confidence 1112223333333322 111 1111 1256777888777765331
Q ss_pred cccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC--chhhCCCCCCCEEEccCCcCcccCCCCCccCC
Q 041782 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF--PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV 547 (821)
Q Consensus 470 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 547 (821)
....+++|++|++++|.+++..|..+..+++|++|++++|++++.. |..++.+++|++|++++|++.+.+|... ...
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~ 426 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAW 426 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCC
T ss_pred CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcC
Confidence 1134678888888888888878888888888999999999888753 4668888999999999999887566542 256
Q ss_pred CCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEeccee
Q 041782 548 FPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIE 627 (821)
Q Consensus 548 l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (821)
+++|++|++++|++++.+|..+
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l---------------------------------------------------------- 448 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCL---------------------------------------------------------- 448 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSC----------------------------------------------------------
T ss_pred cccCCEEECCCCCCCcchhhhh----------------------------------------------------------
Confidence 7899999999999886554320
Q ss_pred eecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhh-hcCccCCCeEeCCCCcccccCC
Q 041782 628 MNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSS-LGNLTVLESLDLSNNNLSGEIP 700 (821)
Q Consensus 628 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~~p 700 (821)
.+.|+.|+|++|+++ .+|..+.++++|++|+|++|+++ .+|.. |+.+++|++|++++|++.+..|
T Consensus 449 ------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 449 ------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp ------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 124889999999998 78888889999999999999999 45555 9999999999999999987654
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.2e-41 Score=355.43 Aligned_cols=248 Identities=30% Similarity=0.466 Sum_probs=194.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCcc--ccceeeCCCC--CCEEEEEcCCCCCcc--cc
Q 041782 30 LCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCS--WDGVKCNEDT--GHVIKLNLTSSCIYG--SI 103 (821)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~g--~~ 103 (821)
.|.++|++||++||+++.++. .+++|+. +++||. |.||+|+..+ ++|+.|+|+++.+.| .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~----------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT----------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG----------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcCCcc----------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence 599999999999999996542 5889976 678998 9999998655 899999999999998 77
Q ss_pred cCCcccccCCCCCEEeCCC-CCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCE
Q 041782 104 NSSSSLFHLRHLEWLSLAD-NNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSW 182 (821)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~-n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~ 182 (821)
+. .+.++++|++|+|++ |.+.+ .+|.. ++++++|++|+|++|.+++..| ..+.++++|++
T Consensus 69 ~~--~l~~l~~L~~L~L~~~n~l~~-~~p~~-------------l~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~ 129 (313)
T 1ogq_A 69 PS--SLANLPYLNFLYIGGINNLVG-PIPPA-------------IAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVT 129 (313)
T ss_dssp CG--GGGGCTTCSEEEEEEETTEES-CCCGG-------------GGGCTTCSEEEEEEECCEEECC---GGGGGCTTCCE
T ss_pred Ch--hHhCCCCCCeeeCCCCCcccc-cCChh-------------HhcCCCCCEEECcCCeeCCcCC---HHHhCCCCCCE
Confidence 66 888899999999984 77753 36665 6778888888888888887777 66777888888
Q ss_pred EecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC-CCCEEEccCCcCCCCCccccCCCCCCCEEEccCcc
Q 041782 183 LALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN-RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261 (821)
Q Consensus 183 L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 261 (821)
|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888777888888888888888888888777777787777 788888888888777777777776 8888888887
Q ss_pred CCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccc
Q 041782 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS 313 (821)
Q Consensus 262 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 313 (821)
+++..|..+.++++|++|++++|.+++..+. +..+++|++|++++|.++
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSCCE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCCccc
Confidence 7777777777777777777777777654332 445555555555555554
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.8e-40 Score=367.85 Aligned_cols=404 Identities=24% Similarity=0.269 Sum_probs=192.7
Q ss_pred CCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCC
Q 041782 150 LTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLT 229 (821)
Q Consensus 150 l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 229 (821)
.++|++|++++|.+ +.+| ..++++++|++|++++|.+.+.+|.+++++++|+.+++..|.. .+++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP---~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~ 74 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMP---VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAH 74 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCS
T ss_pred cccchhhhcccCch-hhCC---hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCC
Confidence 45666666666666 4555 4556666666666666666666666666666554444333321 2344
Q ss_pred EEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782 230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA 309 (821)
Q Consensus 230 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~ 309 (821)
+|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++. +. + .++|++|++++
T Consensus 75 ~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~---~--~~~L~~L~L~~ 140 (454)
T 1jl5_A 75 ELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD---L--PPLLEYLGVSN 140 (454)
T ss_dssp EEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS---C--CTTCCEEECCS
T ss_pred EEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC---C--CCCCCEEECcC
Confidence 45555554443 2221 2345555555555543 3322 24445555555444321 10 0 13444444444
Q ss_pred cccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCC
Q 041782 310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG 389 (821)
Q Consensus 310 n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~ 389 (821)
|.++++ | .++.+++|++|++++|++++ +|..+ .+|++|++++|.+++
T Consensus 141 n~l~~l--------------------------p-~~~~l~~L~~L~l~~N~l~~-lp~~~-----~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 141 NQLEKL--------------------------P-ELQNSSFLKIIDVDNNSLKK-LPDLP-----PSLEFIAAGNNQLEE 187 (454)
T ss_dssp SCCSSC--------------------------C-CCTTCTTCCEEECCSSCCSC-CCCCC-----TTCCEEECCSSCCSS
T ss_pred CCCCCC--------------------------c-ccCCCCCCCEEECCCCcCcc-cCCCc-----ccccEEECcCCcCCc
Confidence 444332 2 13333444444444444432 22211 244555555555544
Q ss_pred CCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcc
Q 041782 390 FDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469 (821)
Q Consensus 390 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~ 469 (821)
.+ .+..+++|++|++++|.+++ +|..+.+++.+++++|.+. .+|. ++.+++|++|++++|++++ +|..
T Consensus 188 l~---~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~----- 255 (454)
T 1jl5_A 188 LP---ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL----- 255 (454)
T ss_dssp CC---CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC-----
T ss_pred Cc---cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc-----
Confidence 32 13444555555555555544 2222334555555555554 4553 6778888888888888875 3432
Q ss_pred cccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCC
Q 041782 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFP 549 (821)
Q Consensus 470 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 549 (821)
+++|++|++++|.+++ +|.. +++|++|++++|++++.. . ..++|++|++++|++.+. +. ..+
T Consensus 256 ----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-~~-----~~~ 317 (454)
T 1jl5_A 256 ----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-CD-----LPP 317 (454)
T ss_dssp ----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-CC-----CCT
T ss_pred ----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCcc-cC-----CcC
Confidence 3678888888888875 4443 367888888888887741 1 126788888888887752 21 125
Q ss_pred CCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeee
Q 041782 550 KLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMN 629 (821)
Q Consensus 550 ~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (821)
+|++|++++|++++ +|..
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~------------------------------------------------------------- 335 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL------------------------------------------------------------- 335 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC-------------------------------------------------------------
T ss_pred cCCEEECCCCcccc-cccc-------------------------------------------------------------
Confidence 78888888888774 5421
Q ss_pred cccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCc--chhhhhcCccCCCeEeCCCCcccccCCCCccccC
Q 041782 630 YGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLG--HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT 707 (821)
Q Consensus 630 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 707 (821)
++.|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.+++++ +.|.+.+.+|.. ++
T Consensus 336 ----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~ 396 (454)
T 1jl5_A 336 ----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQ 396 (454)
T ss_dssp ----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------------
T ss_pred ----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cC
Confidence 123777888888887 4665 46788888888888887 666655433 346666666653 46
Q ss_pred CccEEEcccCcccc--cCCCC
Q 041782 708 SLAVFDVSDNNLTG--QIPQG 726 (821)
Q Consensus 708 ~L~~L~ls~N~l~g--~iP~~ 726 (821)
+|++|++++|+++| .+|..
T Consensus 397 ~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 397 NLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp ---------------------
T ss_pred cCCEEECCCCcCCccccchhh
Confidence 78889999999887 67643
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.2e-39 Score=360.81 Aligned_cols=385 Identities=22% Similarity=0.225 Sum_probs=218.5
Q ss_pred CCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCC-ccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeec
Q 041782 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL-PSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD 280 (821)
Q Consensus 202 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 280 (821)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34445555555554444444555555555555555444222 33445555555555555555544455555555555555
Q ss_pred cccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCC
Q 041782 281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANK 360 (821)
Q Consensus 281 L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~ 360 (821)
+++|.+++..+....+..+++|++|++++|.+++..+.. .+..+++|++|++++|+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS------------------------FFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG------------------------GGGGCTTCCEEECTTCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCccc------------------------ccCCCCcccEEeCCCCc
Confidence 555555443332233455555555555555554432221 13455666666666666
Q ss_pred CCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchh
Q 041782 361 IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW 440 (821)
Q Consensus 361 l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 440 (821)
+.+..|..+..+...+++.|++++|.+.+..+..... .....
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------~~~~~ 207 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------------------------------EKCGN 207 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------------------------------HHHCC
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccc--------------------------------------ccccc
Confidence 6666666555554355666666666655544321000 00011
Q ss_pred hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520 (821)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 520 (821)
+..+++|++|++++|++.+.+|..+... ...++|+.|++++|.+.+.. +..+.+.+..+..+.
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~ 270 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDA---IAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFK 270 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHH---TTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTG
T ss_pred ccccceeeeEecCCCcccccchhhhhcc---ccccceeeEeeccccccccc--------------cchhhhccCcccccc
Confidence 2233455555555555555444333211 11245555555555443221 111111111111122
Q ss_pred --CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccc
Q 041782 521 --TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI 598 (821)
Q Consensus 521 --~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~ 598 (821)
..++|++|++++|.+.+..+..+ ..+++|++|++++|++++..|.. +..
T Consensus 271 ~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~-------------------------- 321 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNA-FWG-------------------------- 321 (455)
T ss_dssp GGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTT-TTT--------------------------
T ss_pred cccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccChhH-hcC--------------------------
Confidence 12456666666666665555544 44666666666666665433321 111
Q ss_pred cCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhh
Q 041782 599 LPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSS 678 (821)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~ 678 (821)
++.|+.|+|++|++++..|..|+++++|++|+|++|++++..|..
T Consensus 322 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 322 -----------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred -----------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 233777888888887777888889999999999999999888999
Q ss_pred hcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCC
Q 041782 679 LGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQF 729 (821)
Q Consensus 679 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 729 (821)
|+++++|++|+|++|++++..+..|..+++|++|++++|+++|.+|....+
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999999999999999877778899999999999999999999865433
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.2e-39 Score=360.62 Aligned_cols=425 Identities=21% Similarity=0.269 Sum_probs=207.0
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN 187 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~ 187 (821)
.-.+.++|++|++++|.+ +++|+. ++++++|++|++++|.+.+..| ..++++++|+++++.+
T Consensus 6 ~~~~~~~L~~L~l~~n~l--~~iP~~-------------i~~L~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~l~l~~ 67 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL--TEMPVE-------------AENVKSKTEYYNAWSEWERNAP---PGNGEQREMAVSRLRD 67 (454)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHTSC---TTSCCCHHHHHHHHHH
T ss_pred cccccccchhhhcccCch--hhCChh-------------HhcccchhhhhccCCcccccCC---cccccchhcchhhhhh
Confidence 344568999999999998 457877 8899999999999999998888 6677777764444444
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782 188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267 (821)
Q Consensus 188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 267 (821)
|.. .++++|++++|.+++ +|. -.++|++|++++|.+++ +|.. .++|++|++++|.+++ +|
T Consensus 68 c~~-----------~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~ 127 (454)
T 1jl5_A 68 CLD-----------RQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LS 127 (454)
T ss_dssp HHH-----------HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred hhc-----------cCCCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-cc
Confidence 321 234455555555442 222 12345555555555553 3322 2445555555555442 12
Q ss_pred ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND 347 (821)
Q Consensus 268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~ 347 (821)
.. .++|++|++++|++++ +| + +..+++|++|++++|.+++++.. ..+|++|++++|.+..+| .++.
T Consensus 128 ~~---~~~L~~L~L~~n~l~~-lp--~-~~~l~~L~~L~l~~N~l~~lp~~------~~~L~~L~L~~n~l~~l~-~~~~ 193 (454)
T 1jl5_A 128 DL---PPLLEYLGVSNNQLEK-LP--E-LQNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEELP-ELQN 193 (454)
T ss_dssp SC---CTTCCEEECCSSCCSS-CC--C-CTTCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSSCC-CCTT
T ss_pred CC---CCCCCEEECcCCCCCC-Cc--c-cCCCCCCCEEECCCCcCcccCCC------cccccEEECcCCcCCcCc-cccC
Confidence 11 1345555555555543 22 1 45555555555555555443221 235555555555555555 3667
Q ss_pred CCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceee
Q 041782 348 QDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL 427 (821)
Q Consensus 348 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~ 427 (821)
+++|++|++++|++.+ +|... ++|++|++++|.++.++ . +..+++|++|++++|++++. |
T Consensus 194 l~~L~~L~l~~N~l~~-l~~~~-----~~L~~L~l~~n~l~~lp-~--~~~l~~L~~L~l~~N~l~~l-~---------- 253 (454)
T 1jl5_A 194 LPFLTAIYADNNSLKK-LPDLP-----LSLESIVAGNNILEELP-E--LQNLPFLTTIYADNNLLKTL-P---------- 253 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCCCC-----TTCCEEECCSSCCSSCC-C--CTTCTTCCEEECCSSCCSSC-C----------
T ss_pred CCCCCEEECCCCcCCc-CCCCc-----CcccEEECcCCcCCccc-c--cCCCCCCCEEECCCCcCCcc-c----------
Confidence 7778888888887765 33321 46788888888777544 2 55677788888888777641 1
Q ss_pred ccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCC
Q 041782 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG 507 (821)
Q Consensus 428 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 507 (821)
.. .++|++|++++|++++ +|.. +++|++|++++|.+++. |. -.++|++|+++
T Consensus 254 -----------~~---~~~L~~L~l~~N~l~~-l~~~---------~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~ 305 (454)
T 1jl5_A 254 -----------DL---PPSLEALNVRDNYLTD-LPEL---------PQSLTFLDVSENIFSGL-SE---LPPNLYYLNAS 305 (454)
T ss_dssp -----------SC---CTTCCEEECCSSCCSC-CCCC---------CTTCCEEECCSSCCSEE-SC---CCTTCCEEECC
T ss_pred -----------cc---ccccCEEECCCCcccc-cCcc---------cCcCCEEECcCCccCcc-cC---cCCcCCEEECc
Confidence 11 2567777777777765 3332 35677777777777652 21 12577778888
Q ss_pred CCcCCcCCchhhCCC-CCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchh
Q 041782 508 NNQIADIFPSWLGTL-PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKY 586 (821)
Q Consensus 508 ~n~l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~ 586 (821)
+|++++.. .+ ++|++|++++|++.+ +|.. +++|++|++++|+++ .+|. .
T Consensus 306 ~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~-----~~~L~~L~L~~N~l~-~lp~-~----------------- 355 (454)
T 1jl5_A 306 SNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL-----PPRLERLIASFNHLA-EVPE-L----------------- 355 (454)
T ss_dssp SSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCS-CCCC-C-----------------
T ss_pred CCcCCccc-----CCcCcCCEEECCCCcccc-cccc-----CCcCCEEECCCCccc-cccc-h-----------------
Confidence 77777631 22 478888888888775 4432 577888888888876 4552 0
Q ss_pred cccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccC--ccccccccCCCCCEE
Q 041782 587 MQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIG--KIPTSISELKGLNCL 664 (821)
Q Consensus 587 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L 664 (821)
++.|+.|++++|++++ .+|..++++
T Consensus 356 -----------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~L------ 382 (454)
T 1jl5_A 356 -----------------------------------------------PQNLKQLHVEYNPLREFPDIPESVEDL------ 382 (454)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCEE------
T ss_pred -----------------------------------------------hhhccEEECCCCCCCcCCCChHHHHhh------
Confidence 2237788888888887 677665543
Q ss_pred eCCCcccCcchhhhhcCccCCCeEeCCCCcccc--cCCCCccccCCccEEEcccCcccccCCCC
Q 041782 665 NLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG--EIPRQLAELTSLAVFDVSDNNLTGQIPQG 726 (821)
Q Consensus 665 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 726 (821)
+.|.+.+.+|.. +++|++||+++|++++ .+|. +++.|++++|.+.+.+|..
T Consensus 383 --~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 383 --RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp --ECCC----------------------------------------------------------
T ss_pred --hhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccC
Confidence 346777777764 5788899999999987 5664 3566778888888877643
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-37 Score=347.83 Aligned_cols=368 Identities=20% Similarity=0.213 Sum_probs=250.6
Q ss_pred CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG 192 (821)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 192 (821)
++|++|+|++|.+.+ ..|.. ++++++|++|+|++|.+.+.++. ..+.++++|++|++++|.+.+
T Consensus 30 ~~l~~L~Ls~n~i~~-~~~~~-------------~~~l~~L~~L~L~~n~~~~~i~~--~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-LNETS-------------FSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp TTCCEEECCSSCCCE-ECTTT-------------TSSCTTCCEEECCCCSTTCEECT--TTTTTCTTCCEEECTTCTTCE
T ss_pred CccCEEEecCCccCc-CChhH-------------hccCccccEEECcCCcccceECc--ccccccccCCEEeCCCCccCc
Confidence 778888888887753 12333 77788888888888887654421 456677778888888777777
Q ss_pred cCCccccCCCCCCEEEccCCcCCCCcchh--hhcCCCCCEEEccCCcCCCCCccc-cCCCCCCCEEEccCccCCCCCCcc
Q 041782 193 EFPSWLMNLTQLTYINFDLNQLTGPIPNW--LANLNRLTILSLKSNQLRGYLPSQ-IGSLTQLTALDLSCNQFQGPVPSS 269 (821)
Q Consensus 193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~ 269 (821)
..|..|+++++|++|++++|.+++..+.. |..+++|++|++++|.+++..|.. +.++++|++|++++|.+++..|..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 77777777777888888777777655444 777777777777777777666655 677777777777777777766666
Q ss_pred ccCC--CCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccch------hccCCCeeEEecCCCCC-ch
Q 041782 270 ISEL--KRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN------IRLQNKFVFLGLASCNL-KE 340 (821)
Q Consensus 270 l~~l--~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~~~L~~L~L~~~~l-~~ 340 (821)
+..+ .+|+.|++++|.+.+. ....+. ....++|+.|++++|.+ +.
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~--------------------------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDM--------------------------NEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTC--------------------------STTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred hhccccccccccccccCccccc--------------------------chhhccccccccccccceeeeEecCCCccccc
Confidence 6554 5666666666665532 111110 00122333333333333 22
Q ss_pred hhhhhcC---CCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCcc-ccccCCccEEEeccCcccCcC
Q 041782 341 FLDFLND---QDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSV-VLLWTDLVTLDLRSNKLQGPL 416 (821)
Q Consensus 341 ~~~~l~~---l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~ 416 (821)
.|..+.. .++|+.|++++|...+.... .+.+.+...... ....++|++|++++|.+
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l---- 287 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKI---- 287 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCC----
T ss_pred chhhhhccccccceeeEeeccccccccccc----------------hhhhccCcccccccccccCceEEEecCccc----
Confidence 2222221 24555555555544322110 001111111000 01123455555555544
Q ss_pred CCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhc
Q 041782 417 PIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA 496 (821)
Q Consensus 417 ~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 496 (821)
.+..|..+..+++|++|++++|++.+..|..+ .++++|++|++++|.+++..|..|.
T Consensus 288 -----------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 288 -----------------FALLKSVFSHFTDLEQLTLAQNEINKIDDNAF------WGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp -----------------CEECTTTTTTCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECCSSCCCEECGGGGT
T ss_pred -----------------cccchhhcccCCCCCEEECCCCcccccChhHh------cCcccCCEEECCCCccCCcChhHhc
Confidence 44566778899999999999999998877654 4589999999999999988899999
Q ss_pred CCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCCh
Q 041782 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPS 567 (821)
Q Consensus 497 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~ 567 (821)
.+++|++|++++|++++..|..+..+++|++|++++|++++..+..+ ..+++|++|++++|++++.+|.
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTT
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCc
Confidence 99999999999999999999999999999999999999996554444 5689999999999999999883
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.1e-37 Score=340.24 Aligned_cols=360 Identities=23% Similarity=0.249 Sum_probs=261.3
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN 187 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~ 187 (821)
.+.++++|++|++++|.+.+ +| . ++.+++|++|++++|.+++. | ++.+++|++|++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~--~~-~-------------l~~l~~L~~L~Ls~n~l~~~-~-----~~~l~~L~~L~Ls~ 94 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD--MT-G-------------IEKLTGLTKLICTSNNITTL-D-----LSQNTNLTYLACDS 94 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC--CT-T-------------GGGCTTCSEEECCSSCCSCC-C-----CTTCTTCSEEECCS
T ss_pred ChhHcCCCCEEEccCCCccc--Ch-h-------------hcccCCCCEEEccCCcCCeE-c-----cccCCCCCEEECcC
Confidence 67788899999999988864 44 2 67888899999999988874 2 56788888888888
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782 188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267 (821)
Q Consensus 188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 267 (821)
|.+.+. + ++++++|++|++++|.+++ +| ++.+++|++|++++|++++. .++++++|++|++++|...+.+
T Consensus 95 N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~- 164 (457)
T 3bz5_A 95 NKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL- 164 (457)
T ss_dssp SCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-
T ss_pred CCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-
Confidence 888763 3 7888888888888888885 34 78888888888888888864 3778888888888888655454
Q ss_pred ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND 347 (821)
Q Consensus 268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~ 347 (821)
.+..+++|++|++++|++++ ++ +..+++|+.|++++|.++++. +..
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~-l~----l~~l~~L~~L~l~~N~l~~~~----------------------------l~~ 210 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITE-LD----VSQNKLLNRLNCDTNNITKLD----------------------------LNQ 210 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCC-CC----CTTCTTCCEEECCSSCCSCCC----------------------------CTT
T ss_pred -ccccCCcCCEEECCCCccce-ec----cccCCCCCEEECcCCcCCeec----------------------------ccc
Confidence 46778888888888888875 22 567778888888888776542 334
Q ss_pred CCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceee
Q 041782 348 QDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL 427 (821)
Q Consensus 348 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~ 427 (821)
+++|++|++++|++++ +| +..+ ++|++|++++|.+++.+. ..+++|+.|++++|+ ++.++
T Consensus 211 l~~L~~L~Ls~N~l~~-ip--~~~l--~~L~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n~-----------L~~L~ 270 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTE-ID--VTPL--TQLTYFDCSVNPLTELDV----STLSKLTTLHCIQTD-----------LLEID 270 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTC--TTCSEEECCSSCCSCCCC----TTCTTCCEEECTTCC-----------CSCCC
T ss_pred CCCCCEEECcCCcccc-cC--cccc--CCCCEEEeeCCcCCCcCH----HHCCCCCEEeccCCC-----------CCEEE
Confidence 4556666666666655 33 4444 556666666666665532 245566666666653 34556
Q ss_pred ccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcc--cccCCCcccEEeccCccccccCchhhcCCCCCCEEe
Q 041782 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK--IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505 (821)
Q Consensus 428 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 505 (821)
+++|.+.+.+| ++.+++|+.|++++|...+.+|....... .+.++++|++|++++|++++. + +..+++|+.|+
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLS 345 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence 66666666665 45677888888888877777664322211 245678899999999999874 3 88899999999
Q ss_pred CCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhcc
Q 041782 506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW 573 (821)
Q Consensus 506 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l 573 (821)
+++|++++. +.|..|++++|.+.|. ..+..|+.+++++|+++|.||..++...
T Consensus 346 l~~N~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~ 398 (457)
T 3bz5_A 346 CVNAHIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQF 398 (457)
T ss_dssp CCSSCCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTT
T ss_pred CCCCCCCCc--------cccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhccc
Confidence 999998873 5667778888988875 2356788899999999999998765443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-36 Score=338.90 Aligned_cols=358 Identities=23% Similarity=0.211 Sum_probs=218.1
Q ss_pred ccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCC
Q 041782 196 SWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKR 275 (821)
Q Consensus 196 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 275 (821)
..++++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|++++|.+++. + ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 3445555555555555555532 3 455555555555555555542 2 55555555555555555542 2 555555
Q ss_pred cCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEe
Q 041782 276 LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLD 355 (821)
Q Consensus 276 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~ 355 (821)
|++|++++|++++ ++ +..+++|++|++++|.+++++ ++.+++|++|+
T Consensus 108 L~~L~L~~N~l~~-l~----~~~l~~L~~L~l~~N~l~~l~----------------------------l~~l~~L~~L~ 154 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD----VSQNPLLTYLNCARNTLTEID----------------------------VSHNTQLTELD 154 (457)
T ss_dssp CCEEECCSSCCSC-CC----CTTCTTCCEEECTTSCCSCCC----------------------------CTTCTTCCEEE
T ss_pred CCEEECCCCcCCe-ec----CCCCCcCCEEECCCCccceec----------------------------cccCCcCCEEE
Confidence 5555555555553 11 445555555555555554421 22334444444
Q ss_pred cccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCC
Q 041782 356 LSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTG 435 (821)
Q Consensus 356 Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~ 435 (821)
+++|+..+.++ +..+ ++|++|++++|.+++.+ +..+++|++|++++|++++.
T Consensus 155 l~~n~~~~~~~--~~~l--~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~-------------------- 206 (457)
T 3bz5_A 155 CHLNKKITKLD--VTPQ--TQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKL-------------------- 206 (457)
T ss_dssp CTTCSCCCCCC--CTTC--TTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCC--------------------
T ss_pred CCCCCcccccc--cccC--CcCCEEECCCCccceec----cccCCCCCEEECcCCcCCee--------------------
Confidence 44443333321 2333 44555555555555432 23445566666666655431
Q ss_pred CCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC
Q 041782 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF 515 (821)
Q Consensus 436 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 515 (821)
.+..+++|++|++++|++++ +| +..+++|++|++++|.+++.. +..+++|+.|++++|
T Consensus 207 ----~l~~l~~L~~L~Ls~N~l~~-ip--------~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------ 264 (457)
T 3bz5_A 207 ----DLNQNIQLTFLDCSSNKLTE-ID--------VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------ 264 (457)
T ss_dssp ----CCTTCTTCSEEECCSSCCSC-CC--------CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC------
T ss_pred ----ccccCCCCCEEECcCCcccc-cC--------ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC------
Confidence 14456677777777777776 33 234677777777777777543 445667777777664
Q ss_pred chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCc
Q 041782 516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL 595 (821)
Q Consensus 516 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l 595 (821)
+|+.|++++|.+.+.+|. ..+++|+.|++++|.+.+.+|.. ...++.++++.
T Consensus 265 --------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~----~~~L~~L~l~~------------ 316 (457)
T 3bz5_A 265 --------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQ----AAGITELDLSQ------------ 316 (457)
T ss_dssp --------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECT----TCCCSCCCCTT------------
T ss_pred --------CCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccC----CCcceEechhh------------
Confidence 355666777777666653 34677888888888777766632 12222222110
Q ss_pred ccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcch
Q 041782 596 NYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHI 675 (821)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~i 675 (821)
.+.|+.|++++|++++. + ++++++|++|++++|++++
T Consensus 317 --------------------------------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-- 353 (457)
T 3bz5_A 317 --------------------------------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-- 353 (457)
T ss_dssp --------------------------------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--
T ss_pred --------------------------------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--
Confidence 23488999999999984 3 8999999999999999996
Q ss_pred hhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC
Q 041782 676 PSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG 726 (821)
Q Consensus 676 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 726 (821)
++.|+.|++++|.++|. ..+..|..+++++|+++|.||..
T Consensus 354 ------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 ------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 35677889999999987 35667888999999999999975
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3e-34 Score=322.29 Aligned_cols=119 Identities=33% Similarity=0.402 Sum_probs=65.3
Q ss_pred CCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 041782 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256 (821)
Q Consensus 177 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 256 (821)
+++|+.|+++++.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4556666666665532 33 25556666666666666654332 5666666666666666654332 56666666666
Q ss_pred ccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEEC
Q 041782 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL 307 (821)
Q Consensus 257 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L 307 (821)
+++|.+++. +. +.++++|++|++++|.+.+. + .+..+++|++|++
T Consensus 119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l 163 (466)
T 1o6v_A 119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S---ALSGLTSLQQLSF 163 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G---GGTTCTTCSEEEE
T ss_pred CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h---hhccCCcccEeec
Confidence 666665543 22 55566666666666555431 1 1444444444444
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-33 Score=317.41 Aligned_cols=347 Identities=27% Similarity=0.354 Sum_probs=222.8
Q ss_pred ccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcc
Q 041782 110 FHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN 189 (821)
Q Consensus 110 ~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 189 (821)
..+++|+.|+++++.+.. +|.+..+++|++|+|++|.+++..+ +.++++|++|++++|.
T Consensus 43 ~~l~~l~~L~l~~~~i~~----------------l~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~l~~n~ 101 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS----------------IDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQ 101 (466)
T ss_dssp HHHHTCCEEECCSSCCCC----------------CTTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred hHhccccEEecCCCCCcc----------------CcchhhhcCCCEEECCCCccCCchh-----hhccccCCEEECCCCc
Confidence 568888999888887642 4457778888888888888876543 6778888888888888
Q ss_pred ccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcc
Q 041782 190 LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSS 269 (821)
Q Consensus 190 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 269 (821)
+.+..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++. + .+.++++|++|+++ |.+.+. + .
T Consensus 102 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~ 172 (466)
T 1o6v_A 102 IADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-P 172 (466)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-G
T ss_pred cccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-h
Confidence 765544 7788888888888888875433 77888888888888887753 3 47788888888886 444433 2 3
Q ss_pred ccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCC
Q 041782 270 ISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQD 349 (821)
Q Consensus 270 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~ 349 (821)
+.++++|++|++++|.+++. ..+..+++|++|++++|.+++..+ ++.++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~ 221 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITP---------------------------LGILT 221 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG---------------------------GGGCT
T ss_pred hccCCCCCEEECcCCcCCCC----hhhccCCCCCEEEecCCccccccc---------------------------ccccC
Confidence 77778888888888877642 226677777777777777665443 23344
Q ss_pred ccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeecc
Q 041782 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVS 429 (821)
Q Consensus 350 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~ 429 (821)
+|+.|++++|++.+. ..+..+ ++|++|++++|.+++..+ +..+++|++|++++|.+.+.
T Consensus 222 ~L~~L~l~~n~l~~~--~~l~~l--~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-------------- 280 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI--GTLASL--TNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNI-------------- 280 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGC--TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCC--------------
T ss_pred CCCEEECCCCCcccc--hhhhcC--CCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcc--------------
Confidence 444444444444432 223333 445555555555444432 33445555555555554421
Q ss_pred CCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCC
Q 041782 430 NNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN 509 (821)
Q Consensus 430 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 509 (821)
+. +..+++|++|++++|++.+..| +..+++|++|++++|.+++..| +..+++|++|++++|
T Consensus 281 --------~~-~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 281 --------SP-LAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341 (466)
T ss_dssp --------GG-GTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred --------cc-ccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence 11 4556666666666666665422 3345666777777776665544 566677777777777
Q ss_pred cCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc
Q 041782 510 QIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG 563 (821)
Q Consensus 510 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g 563 (821)
++++. ..+..+++|++|++++|++.+..| . ..+++|+.|++++|++++
T Consensus 342 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 342 KVSDV--SSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEECCCEEEEC
T ss_pred ccCCc--hhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEeccCCcccC
Confidence 66665 356667777777777777666554 2 456677777777777664
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=324.74 Aligned_cols=327 Identities=22% Similarity=0.221 Sum_probs=261.1
Q ss_pred CeeEEecCCCCCchh-hhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEE
Q 041782 327 KFVFLGLASCNLKEF-LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL 405 (821)
Q Consensus 327 ~L~~L~L~~~~l~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 405 (821)
+++.|++++|.+..+ +..+..+++|++|+|++|.+.+..|..+.++ ++|++|+|++|.+++.+.. .+..+++|++|
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 109 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL--FNLRTLGLRSNRLKLIPLG-VFTGLSNLTKL 109 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCSCCTT-SSTTCTTCCEE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC--ccCCEEECCCCcCCccCcc-cccCCCCCCEE
Confidence 334444444444333 3346677778888888887777777777777 7788888888877766654 34566777777
Q ss_pred EeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCc
Q 041782 406 DLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN 485 (821)
Q Consensus 406 ~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n 485 (821)
++++|.+.+ ..+..+.++++|++|++++|.+.+..|.. |.++++|++|++++|
T Consensus 110 ~Ls~n~i~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 110 DISENKIVI---------------------LLDYMFQDLYNLKSLEVGDNDLVYISHRA------FSGLNSLEQLTLEKC 162 (477)
T ss_dssp ECTTSCCCE---------------------ECTTTTTTCTTCCEEEECCTTCCEECTTS------STTCTTCCEEEEESC
T ss_pred ECCCCcccc---------------------CChhHccccccCCEEECCCCccceeChhh------ccCCCCCCEEECCCC
Confidence 777776653 34566788999999999999998876655 455899999999999
Q ss_pred cccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCC
Q 041782 486 LLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKL 565 (821)
Q Consensus 486 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~i 565 (821)
.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++... ....+|++|++++|+++ .+
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~ 239 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AV 239 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SC
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-cc
Confidence 9997777789999999999999999999988899999999999999999888877765 44569999999999998 66
Q ss_pred ChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccc
Q 041782 566 PSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNN 645 (821)
Q Consensus 566 p~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 645 (821)
|...+.. ++.|+.|+|++|
T Consensus 240 ~~~~~~~-------------------------------------------------------------l~~L~~L~Ls~n 258 (477)
T 2id5_A 240 PYLAVRH-------------------------------------------------------------LVYLRFLNLSYN 258 (477)
T ss_dssp CHHHHTT-------------------------------------------------------------CTTCCEEECCSS
T ss_pred CHHHhcC-------------------------------------------------------------ccccCeeECCCC
Confidence 6544332 234889999999
Q ss_pred cccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782 646 KLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 646 ~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 725 (821)
.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 99988888899999999999999999999999999999999999999999988888899999999999999999987664
Q ss_pred CCCCCCCCCCccCCCCCCCCCC
Q 041782 726 GKQFNTFENSSFEGNPGLCGKP 747 (821)
Q Consensus 726 ~~~~~~~~~~~~~gn~~lc~~~ 747 (821)
...+.......+.++...|..|
T Consensus 339 ~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 339 LWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp HHHHTTTTSSCCTTCCCBEEES
T ss_pred HhHHhhhhccccCccCceeCCc
Confidence 3333333345566777777655
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-34 Score=313.33 Aligned_cols=352 Identities=20% Similarity=0.205 Sum_probs=221.7
Q ss_pred ccCCCCCCCCCCCCcc-ccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCC
Q 041782 61 KFASWNLEEEDRDCCS-WDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS 139 (821)
Q Consensus 61 ~l~~W~~~~~~~~~c~-w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~ 139 (821)
.+++|.. +.+||. |.++.|.....+ +........... .-..++++++|++++|.+. .+|..+
T Consensus 2 ~~~~~~~---~~~C~~~~~~~~c~~~~~~-----i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~--~l~~~~----- 64 (390)
T 3o6n_A 2 NVKPRQP---EYKCIDSNLQYDCVFYDVH-----IDMQTQDVYFGF--EDITLNNQKIVTFKNSTMR--KLPAAL----- 64 (390)
T ss_dssp -----CC---EECBCC------EEEESCE-----ECSSCCCCEESC--SSGGGCCCSEEEEESCEES--EECTHH-----
T ss_pred CcCCCCC---ccceehhhhhhccceeeee-----eecccccccccc--cccccCCceEEEecCCchh--hCChhH-----
Confidence 4678976 567775 555555322111 122211111111 2346788999999988874 366543
Q ss_pred CcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcc
Q 041782 140 FSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP 219 (821)
Q Consensus 140 ~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 219 (821)
+..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+.+..|..|+++++|++|++++|.++...+
T Consensus 65 -------~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 65 -------LDSFRQVELLNLNDLQIEEIDT---YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp -------HHHCCCCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -------hcccccCcEEECCCCcccccCh---hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 6778899999999999888777 567788888888888888887777778888888888888888885544
Q ss_pred hhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCC
Q 041782 220 NWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKL 299 (821)
Q Consensus 220 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l 299 (821)
..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++. .+..+++|++|++++|.+++ +...
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-------~~~~ 204 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-------LAIP 204 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-------EECC
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-------cCCC
Confidence 5568888888888888888877777788888888888888888754 35667888888888887764 3344
Q ss_pred CCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeE
Q 041782 300 KSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF 379 (821)
Q Consensus 300 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~ 379 (821)
++|++|++++|.+..++... .++|+.|++++|.+... .++..+++|++|++++|.+.+..|..+..
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-------- 270 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK-------- 270 (390)
T ss_dssp SSCSEEECCSSCCCEEECCC-----CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT--------
T ss_pred CcceEEECCCCeeeeccccc-----cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccc--------
Confidence 57888888888877664422 34555555555555433 23445555555555555555444444444
Q ss_pred EEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcc
Q 041782 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459 (821)
Q Consensus 380 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 459 (821)
+++|++|++++|++++ ++..+..+++|++|++++|++.+
T Consensus 271 -------------------l~~L~~L~L~~n~l~~----------------------~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 271 -------------------MQRLERLYISNNRLVA----------------------LNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp -------------------CSSCCEEECCSSCCCE----------------------EECSSSCCTTCCEEECCSSCCCC
T ss_pred -------------------cccCCEEECCCCcCcc----------------------cCcccCCCCCCCEEECCCCccee
Confidence 4445555555554432 12223345566666666666653
Q ss_pred cCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC
Q 041782 460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI 514 (821)
Q Consensus 460 ~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 514 (821)
+|..+ ..+++|++|++++|.+++. + +..+++|++|++++|++...
T Consensus 310 -~~~~~------~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 310 -VERNQ------PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -CGGGH------HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred -cCccc------cccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 23222 2356666666666666533 2 55566777777777776553
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=313.35 Aligned_cols=301 Identities=23% Similarity=0.223 Sum_probs=177.0
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
++++|+|++|.+++..+ ..+.++++|++|++++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|
T Consensus 33 ~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQ---DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TCSEEECCSSCCCEECT---TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCcEEECCCCccceECH---hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 45555555555555544 344455555555555555555555556666666666666666654444455566666666
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 311 (821)
++++|.+++..|..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++. +. ..+..+++|+.|++++|.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PT-EALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CH-HHHTTCTTCCEEEEESCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-Ch-hHhcccCCCcEEeCCCCc
Confidence 6666666655555566666666666666666655555566666666666666655532 22 234555555555555555
Q ss_pred cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782 312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD 391 (821)
Q Consensus 312 l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~ 391 (821)
+..+... .+..+++|+.|++++|...+.+|......
T Consensus 188 i~~~~~~-------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------------------- 223 (477)
T 2id5_A 188 INAIRDY-------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYG------------------- 223 (477)
T ss_dssp CCEECTT-------------------------CSCSCTTCCEEEEECCTTCCEECTTTTTT-------------------
T ss_pred CcEeChh-------------------------hcccCcccceeeCCCCccccccCcccccC-------------------
Confidence 5443322 13444556666666655544433322211
Q ss_pred CCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccc
Q 041782 392 RGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIF 471 (821)
Q Consensus 392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~ 471 (821)
.+|++|++++|++++ ..+..+..+++|++|++++|.+++..+.. |
T Consensus 224 --------~~L~~L~l~~n~l~~---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~ 268 (477)
T 2id5_A 224 --------LNLTSLSITHCNLTA---------------------VPYLAVRHLVYLRFLNLSYNPISTIEGSM------L 268 (477)
T ss_dssp --------CCCSEEEEESSCCCS---------------------CCHHHHTTCTTCCEEECCSSCCCEECTTS------C
T ss_pred --------ccccEEECcCCcccc---------------------cCHHHhcCccccCeeECCCCcCCccChhh------c
Confidence 245555555544431 11235666777788888877777654443 3
Q ss_pred cCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCc
Q 041782 472 KNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536 (821)
Q Consensus 472 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 536 (821)
.++++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 44677777777777777777777777777777777777777776666677777777777777665
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8e-34 Score=300.73 Aligned_cols=258 Identities=31% Similarity=0.469 Sum_probs=230.2
Q ss_pred ccceeeccCCccCC--CCchhhhCCCCCcEEEcCC-CcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782 422 STIHYLVSNNLLTG--KLAPWLCNLNSLRVLDLSH-NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC 498 (821)
Q Consensus 422 ~l~~l~l~~n~~~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 498 (821)
.++.+++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..++ .+++|++|++++|.+++.+|..|..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~------~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA------KLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG------GCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh------cCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 34444455555555 6788899999999999995 999999887654 48999999999999999999999999
Q ss_pred CCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCC-CCcEEEccCCcCccCCChhhhhccchhh
Q 041782 499 TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFP-KLRIIDLSHNRFSGKLPSKYFQCWNAIK 577 (821)
Q Consensus 499 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~l~ 577 (821)
++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+ ..++ +|++|++++|++++.+|..+ ..
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~----- 196 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN----- 196 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG-----
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC-----
Confidence 999999999999999999999999999999999999998888776 5576 99999999999998888542 11
Q ss_pred hhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccccccc
Q 041782 578 VANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISE 657 (821)
Q Consensus 578 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~ 657 (821)
++ |+.|++++|++++.+|..+.+
T Consensus 197 --------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~ 219 (313)
T 1ogq_A 197 --------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp --------------------------------------------------------CC-CSEEECCSSEEEECCGGGCCT
T ss_pred --------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhc
Confidence 12 889999999999999999999
Q ss_pred CCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCcc
Q 041782 658 LKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSF 737 (821)
Q Consensus 658 L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 737 (821)
+++|++|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+
T Consensus 220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence 99999999999999988777 88999999999999999999999999999999999999999999999888889999999
Q ss_pred CCCCCCCCCCCCCCC
Q 041782 738 EGNPGLCGKPLSRNC 752 (821)
Q Consensus 738 ~gn~~lc~~~~~~~c 752 (821)
.||+++||.|+. .|
T Consensus 299 ~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 299 ANNKCLCGSPLP-AC 312 (313)
T ss_dssp CSSSEEESTTSS-CC
T ss_pred cCCCCccCCCCC-CC
Confidence 999999998875 46
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-33 Score=321.65 Aligned_cols=349 Identities=21% Similarity=0.247 Sum_probs=226.2
Q ss_pred ccCCCCCCCCCCCCcc----ccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccc
Q 041782 61 KFASWNLEEEDRDCCS----WDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMN 136 (821)
Q Consensus 61 ~l~~W~~~~~~~~~c~----w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~ 136 (821)
.+++|.+ +.+||. |.++.|+. + ++-........+ .-..+.+++.|++++|.+. .+|..+
T Consensus 8 ~l~~~~~---~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~--~lp~~~-- 70 (597)
T 3oja_B 8 NVKPRQP---EYKCIDSNLQYDCVFYDV---H---IDMQTQDVYFGF----EDITLNNQKIVTFKNSTMR--KLPAAL-- 70 (597)
T ss_dssp ---CCCS---EECCCCC--CCSEEECSC---E---ECSSCCCCEESC----SSGGGCCCSEEEESSCEES--EECTHH--
T ss_pred cccCCCC---CCcCcccCcCceeEecCc---e---ecccccccccCc----ccccCCCceEEEeeCCCCC--CcCHHH--
Confidence 5789987 567774 66665542 1 122121111111 2235678899999988874 355543
Q ss_pred cCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC
Q 041782 137 LSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG 216 (821)
Q Consensus 137 l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 216 (821)
+..+++|++|+|++|.+++..| ..++.+++|++|++++|.+.+..|..|+++++|++|+|++|.+++
T Consensus 71 ----------~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (597)
T 3oja_B 71 ----------LDSFRQVELLNLNDLQIEEIDT---YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137 (597)
T ss_dssp ----------HHHCCCCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------HccCCCCcEEECCCCCCCCCCh---HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC
Confidence 6778889999999999888877 667788888899998888888777778888888899998888886
Q ss_pred CcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeeccccccc
Q 041782 217 PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296 (821)
Q Consensus 217 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l 296 (821)
..+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++. .++.+++|++|++++|.+++ +
T Consensus 138 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-------l 207 (597)
T 3oja_B 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-------L 207 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-------E
T ss_pred CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-------c
Confidence 6556678888888888888888888788888888888888888888754 25567888888888887764 3
Q ss_pred CCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCC
Q 041782 297 PKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGN 376 (821)
Q Consensus 297 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~ 376 (821)
...++|+.|++++|.++.++... .++|+.|++++|.+... .++..+++|+.|++++|.+.+..|..+..+
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l---- 277 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM---- 277 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC----
T ss_pred cCCchhheeeccCCccccccccc-----CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCc----
Confidence 34567888888888877665432 24555555555555332 344455555555555555554444444444
Q ss_pred eeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCc
Q 041782 377 LQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNF 456 (821)
Q Consensus 377 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 456 (821)
++|++|++++|.+++ +|..+..+++|++|+|++|.
T Consensus 278 -----------------------~~L~~L~Ls~N~l~~----------------------l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 278 -----------------------QRLERLYISNNRLVA----------------------LNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp -----------------------SSCCEEECTTSCCCE----------------------EECSSSCCTTCCEEECCSSC
T ss_pred -----------------------cCCCEEECCCCCCCC----------------------CCcccccCCCCcEEECCCCC
Confidence 445555555444432 12223345556666666666
Q ss_pred CcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC
Q 041782 457 LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI 514 (821)
Q Consensus 457 l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 514 (821)
++ .+|..+ ..+++|++|++++|.+++. + +..+++|+.|++++|.+.+.
T Consensus 313 l~-~i~~~~------~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 313 LL-HVERNQ------PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CC-CCGGGH------HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CC-ccCccc------ccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 55 233322 2245666666666666533 2 45556666777777766543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-32 Score=299.58 Aligned_cols=318 Identities=22% Similarity=0.236 Sum_probs=228.3
Q ss_pred CCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL 228 (821)
Q Consensus 149 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 228 (821)
.++++++|++++|.++...+ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~---~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECT---HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCCh---hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 46788999999988887666 556778888888888888877666788888888888888888887777778888888
Q ss_pred CEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECC
Q 041782 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308 (821)
Q Consensus 229 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~ 308 (821)
++|++++|.++...+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++. + +..+++|+.|+++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVS 194 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C----GGGCTTCSEEECC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c----cccccccceeecc
Confidence 8888888888854444567888888888888888877777788888888888888887642 1 4456667777776
Q ss_pred CcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCC
Q 041782 309 ANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT 388 (821)
Q Consensus 309 ~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~ 388 (821)
+|.++.+. ..++|++|++++|.+.
T Consensus 195 ~n~l~~~~------------------------------~~~~L~~L~l~~n~l~-------------------------- 218 (390)
T 3o6n_A 195 YNLLSTLA------------------------------IPIAVEELDASHNSIN-------------------------- 218 (390)
T ss_dssp SSCCSEEE------------------------------CCSSCSEEECCSSCCC--------------------------
T ss_pred cccccccC------------------------------CCCcceEEECCCCeee--------------------------
Confidence 66655321 1234445555554443
Q ss_pred CCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCc
Q 041782 389 GFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS 468 (821)
Q Consensus 389 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~ 468 (821)
..... ..++|++|++++|.+++ ...+..+++|++|++++|.+.+..|..+
T Consensus 219 ~~~~~----~~~~L~~L~l~~n~l~~-----------------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--- 268 (390)
T 3o6n_A 219 VVRGP----VNVELTILKLQHNNLTD-----------------------TAWLLNYPGLVEVDLSYNELEKIMYHPF--- 268 (390)
T ss_dssp EEECC----CCSSCCEEECCSSCCCC-----------------------CGGGGGCTTCSEEECCSSCCCEEESGGG---
T ss_pred ecccc----ccccccEEECCCCCCcc-----------------------cHHHcCCCCccEEECCCCcCCCcChhHc---
Confidence 22111 12445555555555432 1346667788888888888877766543
Q ss_pred ccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCC
Q 041782 469 KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF 548 (821)
Q Consensus 469 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 548 (821)
..+++|++|++++|++++ +|..+..+++|++|++++|++++. |..+..+++|++|++++|++... + . ..+
T Consensus 269 ---~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~--~~~ 338 (390)
T 3o6n_A 269 ---VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--L--STH 338 (390)
T ss_dssp ---TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--C--CTT
T ss_pred ---cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--c--hhh
Confidence 447788888888888874 566667788888999988888854 66677888899999999988743 2 2 557
Q ss_pred CCCcEEEccCCcCccCCChhhh
Q 041782 549 PKLRIIDLSHNRFSGKLPSKYF 570 (821)
Q Consensus 549 ~~L~~L~Ls~N~l~g~ip~~~~ 570 (821)
++|+.|++++|++.+.....++
T Consensus 339 ~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp CCCSEEECCSSCEEHHHHHHHT
T ss_pred ccCCEEEcCCCCccchhHHHHH
Confidence 8999999999998765443333
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.1e-32 Score=311.80 Aligned_cols=319 Identities=22% Similarity=0.233 Sum_probs=239.0
Q ss_pred CCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL 228 (821)
Q Consensus 149 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 228 (821)
.+.+++.|++++|.+...++ ..+..+++|++|++++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECT---HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCH---HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 46789999999999988777 667788899999999999888777788999999999999999988888888899999
Q ss_pred CEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECC
Q 041782 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308 (821)
Q Consensus 229 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~ 308 (821)
++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++. + +..+++|+.|+++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~l~ 200 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVS 200 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C----GGGCTTCSEEECC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C----hhhhhhhhhhhcc
Confidence 9999999998866556678899999999999999888888888888899999988888752 1 4456677777777
Q ss_pred CcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCC
Q 041782 309 ANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT 388 (821)
Q Consensus 309 ~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~ 388 (821)
+|.++++. ..++|+.|++++|.+.
T Consensus 201 ~n~l~~l~------------------------------~~~~L~~L~ls~n~l~-------------------------- 224 (597)
T 3oja_B 201 YNLLSTLA------------------------------IPIAVEELDASHNSIN-------------------------- 224 (597)
T ss_dssp SSCCSEEE------------------------------CCTTCSEEECCSSCCC--------------------------
T ss_pred cCcccccc------------------------------CCchhheeeccCCccc--------------------------
Confidence 76655422 1234455555555443
Q ss_pred CCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCc
Q 041782 389 GFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS 468 (821)
Q Consensus 389 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~ 468 (821)
..... ..++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|..+
T Consensus 225 ~~~~~----~~~~L~~L~L~~n~l~~-----------------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--- 274 (597)
T 3oja_B 225 VVRGP----VNVELTILKLQHNNLTD-----------------------TAWLLNYPGLVEVDLSYNELEKIMYHPF--- 274 (597)
T ss_dssp EEECS----CCSCCCEEECCSSCCCC-----------------------CGGGGGCTTCSEEECCSSCCCEEESGGG---
T ss_pred ccccc----cCCCCCEEECCCCCCCC-----------------------ChhhccCCCCCEEECCCCccCCCCHHHh---
Confidence 22111 11345555555555432 2356677888888888888887777654
Q ss_pred ccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCC
Q 041782 469 KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF 548 (821)
Q Consensus 469 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 548 (821)
..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|++|+|++|.+.+. + . ..+
T Consensus 275 ---~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~--~~~ 344 (597)
T 3oja_B 275 ---VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--L--STH 344 (597)
T ss_dssp ---TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--C--CTT
T ss_pred ---cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--h--hhc
Confidence 347888888888888875 56667778889999999998885 466778888999999999988743 2 2 557
Q ss_pred CCCcEEEccCCcCccCCChhhhh
Q 041782 549 PKLRIIDLSHNRFSGKLPSKYFQ 571 (821)
Q Consensus 549 ~~L~~L~Ls~N~l~g~ip~~~~~ 571 (821)
++|+.|++++|++.+.....++.
T Consensus 345 ~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp CCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCCCEEEeeCCCCCChhHHHHHH
Confidence 89999999999988665444443
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=1.1e-32 Score=293.79 Aligned_cols=231 Identities=19% Similarity=0.264 Sum_probs=160.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCC-CCCCCCccccceeeCC--------CCCCEEEEEcCCCCC
Q 041782 29 QLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLE-EEDRDCCSWDGVKCNE--------DTGHVIKLNLTSSCI 99 (821)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~-~~~~~~c~w~gv~C~~--------~~~~v~~L~L~~~~l 99 (821)
..+..+|++||++||+++..++.+ .+.+|... ....++|.|.|+.|+. ...+|+.|+|+++.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~--------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l 93 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNR--------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTT--------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred cccCchHHHHHHHHHHhccCCchh--------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCc
Confidence 356778999999999998544321 46788310 0157899999999952 336788888888877
Q ss_pred cccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCC
Q 041782 100 YGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTE 179 (821)
Q Consensus 100 ~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~ 179 (821)
. .++. .++++++|++|+|++|.+. .+|.. ++++++|++|+|++|.++ .+| ..+.++++
T Consensus 94 ~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~-------------~~~l~~L~~L~Ls~n~l~-~lp---~~l~~l~~ 151 (328)
T 4fcg_A 94 P-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDT-------------MQQFAGLETLTLARNPLR-ALP---ASIASLNR 151 (328)
T ss_dssp S-SCCS--CGGGGTTCSEEEEESSCCC--CCCSC-------------GGGGTTCSEEEEESCCCC-CCC---GGGGGCTT
T ss_pred h-hcCh--hhhhCCCCCEEECCCCCcc--chhHH-------------HhccCCCCEEECCCCccc-cCc---HHHhcCcC
Confidence 6 5555 6777888888888888775 46665 677778888888888877 455 56777778
Q ss_pred CCEEecCCccccccCCccccC---------CCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCC
Q 041782 180 LSWLALANINLIGEFPSWLMN---------LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT 250 (821)
Q Consensus 180 L~~L~L~~n~~~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 250 (821)
|++|++++|++.+.+|..+.. +++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..+..++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~ 229 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP 229 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCT
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCC
Confidence 888888887777777776554 666777777777666 566666666667777777666663 455566666
Q ss_pred CCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecc
Q 041782 251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVY 291 (821)
Q Consensus 251 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 291 (821)
+|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 66666666666666666666666666666666666554433
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=7.6e-31 Score=283.10 Aligned_cols=307 Identities=25% Similarity=0.344 Sum_probs=165.9
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN 226 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 226 (821)
+..+++|++|++++|.+... ..+..+++|++|++++|.+.+. +. +.++++|++|++++|.++. ++ .+..++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-----~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-----QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCT
T ss_pred chhcccccEEEEeCCccccc-----hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCC
Confidence 44566777777777776543 2255566666666666666432 22 6666666666666666653 22 466666
Q ss_pred CCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEE
Q 041782 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLF 306 (821)
Q Consensus 227 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ 306 (821)
+|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 111 ~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~ 183 (347)
T 4fmz_A 111 NLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLS 183 (347)
T ss_dssp TCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEE
T ss_pred cCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh----hccCCCCCEEE
Confidence 666666666666543 22 5566666666666664443322 25556666666666655543211 34445555555
Q ss_pred CCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCC
Q 041782 307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNL 386 (821)
Q Consensus 307 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~ 386 (821)
+++|.+..+. . +..+++|+.|++++|.+.+..+ +.
T Consensus 184 l~~n~l~~~~--------------------------~-~~~l~~L~~L~l~~n~l~~~~~--~~---------------- 218 (347)
T 4fmz_A 184 LNYNQIEDIS--------------------------P-LASLTSLHYFTAYVNQITDITP--VA---------------- 218 (347)
T ss_dssp CTTSCCCCCG--------------------------G-GGGCTTCCEEECCSSCCCCCGG--GG----------------
T ss_pred ccCCcccccc--------------------------c-ccCCCccceeecccCCCCCCch--hh----------------
Confidence 5544443322 1 3344455555555554443222 22
Q ss_pred CCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCcccc
Q 041782 387 ITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLS 466 (821)
Q Consensus 387 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 466 (821)
.+++|++|++++|.+++ ++. +..+++|++|++++|.+++.
T Consensus 219 -----------~~~~L~~L~l~~n~l~~----------------------~~~-~~~l~~L~~L~l~~n~l~~~------ 258 (347)
T 4fmz_A 219 -----------NMTRLNSLKIGNNKITD----------------------LSP-LANLSQLTWLEIGTNQISDI------ 258 (347)
T ss_dssp -----------GCTTCCEEECCSSCCCC----------------------CGG-GTTCTTCCEEECCSSCCCCC------
T ss_pred -----------cCCcCCEEEccCCccCC----------------------Ccc-hhcCCCCCEEECCCCccCCC------
Confidence 33444444444444331 111 44455566666666655532
Q ss_pred CcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccC
Q 041782 467 NSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF 546 (821)
Q Consensus 467 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 546 (821)
..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..++.+++|++|++++|++++..| . .
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~--~ 330 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L--A 330 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G--G
T ss_pred --hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h--h
Confidence 1234456666666666666543 345666666666666666666666666666666666666666665443 2 4
Q ss_pred CCCCCcEEEccCCcCc
Q 041782 547 VFPKLRIIDLSHNRFS 562 (821)
Q Consensus 547 ~l~~L~~L~Ls~N~l~ 562 (821)
.+++|++|++++|+++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 4666666666666654
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.5e-30 Score=277.89 Aligned_cols=308 Identities=24% Similarity=0.329 Sum_probs=233.9
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN 187 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~ 187 (821)
.+..+++|++|+++++.+.. +|.+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~----------------~~~~~~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~ 97 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS----------------IQGIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGT 97 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC----------------CTTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred cchhcccccEEEEeCCcccc----------------chhhhhcCCccEEEccCCccccchh-----hhcCCcCCEEEccC
Confidence 56799999999999998752 4458889999999999999987533 78999999999999
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782 188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267 (821)
Q Consensus 188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 267 (821)
|.+.+ + ..+.++++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+
T Consensus 98 n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 98 NKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp SCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred CcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh
Confidence 99875 4 4699999999999999999854 33 8999999999999997664444 48999999999999999985533
Q ss_pred ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND 347 (821)
Q Consensus 268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~ 347 (821)
+..+++|++|++++|.+.+. + .+..+++|+.|++++|.++.... +..
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l~~n~l~~~~~---------------------------~~~ 219 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQIEDI-S---PLASLTSLHYFTAYVNQITDITP---------------------------VAN 219 (347)
T ss_dssp --GGGCTTCSEEECTTSCCCCC-G---GGGGCTTCCEEECCSSCCCCCGG---------------------------GGG
T ss_pred --hccCCCCCEEEccCCccccc-c---cccCCCccceeecccCCCCCCch---------------------------hhc
Confidence 88999999999999998753 2 27788999999999988775433 445
Q ss_pred CCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceee
Q 041782 348 QDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL 427 (821)
Q Consensus 348 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~ 427 (821)
+++|++|++++|++.+..+ +..+ ++|++|++++|.+++.
T Consensus 220 ~~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~l~~~------------------------------------- 258 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP--LANL--SQLTWLEIGTNQISDI------------------------------------- 258 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTC--TTCCEEECCSSCCCCC-------------------------------------
T ss_pred CCcCCEEEccCCccCCCcc--hhcC--CCCCEEECCCCccCCC-------------------------------------
Confidence 5677777777777654322 3333 3444444444443322
Q ss_pred ccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCC
Q 041782 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG 507 (821)
Q Consensus 428 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 507 (821)
..+..+++|++|++++|++++. + .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 259 -----------~~~~~l~~L~~L~l~~n~l~~~-~-------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 259 -----------NAVKDLTKLKMLNVGSNQISDI-S-------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp -----------GGGTTCTTCCEEECCSSCCCCC-G-------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred -----------hhHhcCCCcCEEEccCCccCCC-h-------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 1244566777777777776643 1 24456778888888888877777778888888888888
Q ss_pred CCcCCcCCchhhCCCCCCCEEEccCCcCc
Q 041782 508 NNQIADIFPSWLGTLPELKVLMLQFNRFH 536 (821)
Q Consensus 508 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 536 (821)
+|++++..| +..+++|++|++++|.++
T Consensus 320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 320 QNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCccccccC--hhhhhccceeehhhhccc
Confidence 888887755 777888888888888764
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.8e-34 Score=319.78 Aligned_cols=98 Identities=21% Similarity=0.180 Sum_probs=54.2
Q ss_pred chhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccccc----CchhhcCCCCCCEEeCCCCcCCc
Q 041782 438 APWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IPRSLANCTMLEFLDLGNNQIAD 513 (821)
Q Consensus 438 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~ 513 (821)
+..+..+++|++|++++|.+.+.....+.. ..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCP-GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHH-HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHH-HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 445566677777777777766432111110 0112356677777777766643 45556667777777777777655
Q ss_pred CCchhhCC-----CCCCCEEEccCCcCc
Q 041782 514 IFPSWLGT-----LPELKVLMLQFNRFH 536 (821)
Q Consensus 514 ~~~~~l~~-----l~~L~~L~L~~N~l~ 536 (821)
..+..+.. .++|++|++++|.++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 43333321 245555555555554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.7e-29 Score=267.79 Aligned_cols=230 Identities=23% Similarity=0.253 Sum_probs=115.5
Q ss_pred CCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEc
Q 041782 178 TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL 257 (821)
Q Consensus 178 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 257 (821)
++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 34555555555554444445555555555555555555555555555556666666655555 3343333 55666666
Q ss_pred cCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCC
Q 041782 258 SCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCN 337 (821)
Q Consensus 258 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~ 337 (821)
++|.+++..+..|.++++|++|++++|.++.....+..+..+ +|++|++++|.++.++..
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~------------------- 190 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD------------------- 190 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-------------------
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-------------------
Confidence 666665444445555666666666666554211111234444 555555555555443221
Q ss_pred CchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCC
Q 041782 338 LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP 417 (821)
Q Consensus 338 l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 417 (821)
+ .++|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+. .+..+++|++|++++|+++
T Consensus 191 -------~--~~~L~~L~l~~n~i~~~~~~~l~~l--~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~---- 254 (332)
T 2ft3_A 191 -------L--PETLNELHLDHNKIQAIELEDLLRY--SKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKLS---- 254 (332)
T ss_dssp -------S--CSSCSCCBCCSSCCCCCCTTSSTTC--TTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCCC----
T ss_pred -------c--cCCCCEEECCCCcCCccCHHHhcCC--CCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcCe----
Confidence 1 1345555555555555444444444 4455555555544444332 2233344444444444443
Q ss_pred CCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCcc
Q 041782 418 IPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC 464 (821)
Q Consensus 418 ~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 464 (821)
.+|..+..+++|++|++++|++++..+..
T Consensus 255 ------------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 255 ------------------RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp ------------------BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred ------------------ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 23344555566666666666665544433
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.7e-29 Score=266.16 Aligned_cols=296 Identities=22% Similarity=0.225 Sum_probs=155.2
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
++++++++++.++..+. .+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~----~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK----DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCC----SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccccCc----cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 56666666666654322 11 2456666666666655555566666666666666666666556666666666666
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 311 (821)
++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.........+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 66666666 3444443 56666777666666555555666666666666666664211111335556666666666665
Q ss_pred cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782 312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD 391 (821)
Q Consensus 312 l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~ 391 (821)
++.++.. + .++|++|++++|++.+..|..+..+ ++|++|++++|.+++..
T Consensus 183 l~~l~~~--------------------------~--~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 183 ITTIPQG--------------------------L--PPSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CCSCCSS--------------------------C--CTTCSEEECTTSCCCEECTGGGTTC--TTCCEEECCSSCCCEEC
T ss_pred cccCCcc--------------------------c--cccCCEEECCCCcCCccCHHHhcCC--CCCCEEECCCCcCceeC
Confidence 5543221 1 1345555555555554444444444 44555555555444433
Q ss_pred CCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccc
Q 041782 392 RGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIF 471 (821)
Q Consensus 392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~ 471 (821)
+. .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+......
T Consensus 233 ~~-~~~~l~~L~~L~L~~N~l~----------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 233 NG-SLANTPHLRELHLNNNKLV----------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp TT-TGGGSTTCCEEECCSSCCS----------------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred hh-hccCCCCCCEEECCCCcCc----------------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 32 1233344444444444443 233344555555556665555554433333221111
Q ss_pred cCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCc--CCchhhCCCCCCCEEEccCC
Q 041782 472 KNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIAD--IFPSWLGTLPELKVLMLQFN 533 (821)
Q Consensus 472 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~N 533 (821)
.. .+.|+.|++++|.+.. +.|..+..+++++.++|++|
T Consensus 290 ~~------------------------~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 TK------------------------KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TT------------------------SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cc------------------------cccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 11 2445555555555532 34455555556666666555
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.5e-32 Score=308.83 Aligned_cols=369 Identities=20% Similarity=0.154 Sum_probs=206.3
Q ss_pred CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCC---CCCccccccCCCcccCCCCCCCCCCCEEEcCCCCC
Q 041782 87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYS---KIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNF 163 (821)
Q Consensus 87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~ 163 (821)
.+++.|+|+++.++..... ..+..+++|++|+|++|.+... .+|.. +..+++|++|+|++|.+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-------------l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSA-------------LRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHH-------------HHTCTTCCEEECTTCCC
T ss_pred ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHH-------------HHhCCCcCEEeCCCCcC
Confidence 3678888888887654322 1367788888888888887532 12333 56778888888888887
Q ss_pred CCCCCCCchhc-cCCC----CCCEEecCCccccc----cCCccccCCCCCCEEEccCCcCCCCcchhhhc-----CCCCC
Q 041782 164 SSPHSASFSWI-AKQT----ELSWLALANINLIG----EFPSWLMNLTQLTYINFDLNQLTGPIPNWLAN-----LNRLT 229 (821)
Q Consensus 164 ~~~~~~~~~~l-~~l~----~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~ 229 (821)
++..+ ..+ ..++ +|++|++++|.+.. .++..+.++++|++|++++|.+++..+..+.. .++|+
T Consensus 69 ~~~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 69 GDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp HHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred ChHHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 65433 222 2334 68888888888763 45777888888888888888877544444332 45788
Q ss_pred EEEccCCcCCCCC----ccccCCCCCCCEEEccCccCCCCCCcccc-----CCCCcCeeccccCCceeec--ccccccCC
Q 041782 230 ILSLKSNQLRGYL----PSQIGSLTQLTALDLSCNQFQGPVPSSIS-----ELKRLEYLDLHSNNLSGNV--YIEELLPK 298 (821)
Q Consensus 230 ~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~--~~~~~l~~ 298 (821)
+|++++|.+++.. +..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. .....+..
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 225 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence 8888888877533 45566678888888888877654333332 2557788888887776421 01133556
Q ss_pred CCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCC----CCcchhccCC
Q 041782 299 LKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGK----IPGWLLNVTT 374 (821)
Q Consensus 299 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~~~~ 374 (821)
+++|++|++++|.++......+. +.....+++|++|++++|.+++. ++..+..+
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~--------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-- 283 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELC--------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-- 283 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHH--------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC--
T ss_pred CCCccEEeccCCcCChHHHHHHH--------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC--
Confidence 77777777777776543221111 11112344455555555544432 23333333
Q ss_pred CCeeEEEcCCCCCCCCCCCccc----cccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEE
Q 041782 375 GNLQFVNLSYNLITGFDRGSVV----LLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVL 450 (821)
Q Consensus 375 ~~L~~L~Ls~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L 450 (821)
++|++|++++|.+++....... ...++|++|++++|.+++... ..++..+..+++|++|
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-----------------~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC-----------------SHFSSVLAQNRFLLEL 346 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-----------------HHHHHHHHHCSSCCEE
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH-----------------HHHHHHHhhCCCccEE
Confidence 4455555555544332211000 111345555555554432100 0133445556666666
Q ss_pred EcCCCcCcccCCccccCccccc-CCCcccEEeccCccccc----cCchhhcCCCCCCEEeCCCCcCCc
Q 041782 451 DLSHNFLSGVLPQCLSNSKIFK-NATNLKMIDLSHNLLQG----RIPRSLANCTMLEFLDLGNNQIAD 513 (821)
Q Consensus 451 ~Ls~n~l~~~~p~~l~~~~~~~-~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~ 513 (821)
++++|.+++..+..+.. .+. ..++|++|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 347 ~Ls~n~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQ--GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp ECCSSBCHHHHHHHHHH--HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred EccCCccccccHHHHHH--HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 66666665443322211 011 13455555555555543 344444445555555555555443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5.6e-28 Score=258.49 Aligned_cols=293 Identities=25% Similarity=0.290 Sum_probs=164.0
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782 179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS 258 (821)
Q Consensus 179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 258 (821)
++++++++++.+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5667777766654 4454443 466667777776665555566666666666666666666556666666666666666
Q ss_pred CccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC
Q 041782 259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338 (821)
Q Consensus 259 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l 338 (821)
+|.++ .+|..+. ++|++|++++|.+++. +. ..+.++++|++|++++|.++..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~l~~n~l~~~----------------------- 160 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKV-RK-SVFNGLNQMIVVELGTNPLKSS----------------------- 160 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBB-CH-HHHTTCTTCCEEECCSSCCCGG-----------------------
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccccc-CH-hHhcCCccccEEECCCCcCCcc-----------------------
Confidence 66665 3444332 4566666666555532 11 2244444444444444443321
Q ss_pred chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCC
Q 041782 339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI 418 (821)
Q Consensus 339 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 418 (821)
+..+..+..+ ++|++|++++|.++.++.. ..++|++|++++|.+++
T Consensus 161 ------------------------~~~~~~~~~l--~~L~~L~l~~n~l~~l~~~----~~~~L~~L~l~~n~l~~---- 206 (330)
T 1xku_A 161 ------------------------GIENGAFQGM--KKLSYIRIADTNITTIPQG----LPPSLTELHLDGNKITK---- 206 (330)
T ss_dssp ------------------------GBCTTGGGGC--TTCCEEECCSSCCCSCCSS----CCTTCSEEECTTSCCCE----
T ss_pred ------------------------CcChhhccCC--CCcCEEECCCCccccCCcc----ccccCCEEECCCCcCCc----
Confidence 1223333333 4444444444444433221 11445555555554432
Q ss_pred CCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782 419 PPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC 498 (821)
Q Consensus 419 ~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 498 (821)
..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.++ .+|..+..+
T Consensus 207 -----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 207 -----------------VDAASLKGLNNLAKLGLSFNSISAVDNGSL------ANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp -----------------ECTGGGTTCTTCCEEECCSSCCCEECTTTG------GGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred -----------------cCHHHhcCCCCCCEEECCCCcCceeChhhc------cCCCCCCEEECCCCcCc-cCChhhccC
Confidence 334556677777777777777776655433 34677777777777777 666777777
Q ss_pred CCCCEEeCCCCcCCcCCchhhCC------CCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCc
Q 041782 499 TMLEFLDLGNNQIADIFPSWLGT------LPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560 (821)
Q Consensus 499 ~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 560 (821)
++|++|++++|++++..+..+.. .+.|+.|++++|++......+.....+++++.++|++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77777777777777766655543 256666666666664311111112335666666666653
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.7e-28 Score=261.14 Aligned_cols=266 Identities=21% Similarity=0.283 Sum_probs=128.9
Q ss_pred CCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccc
Q 041782 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282 (821)
Q Consensus 203 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 282 (821)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3555555555554 3443332 355555555555554444455555555555555555554445555555555555555
Q ss_pred cCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCC
Q 041782 283 SNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIP 362 (821)
Q Consensus 283 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~ 362 (821)
+|.++ .++. . +. ++|++|++++|.++.++. ..+..+++|++|++++|.+.
T Consensus 111 ~n~l~-~l~~-~-~~--~~L~~L~l~~n~i~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 111 KNHLV-EIPP-N-LP--SSLVELRIHDNRIRKVPK-------------------------GVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCC-SCCS-S-CC--TTCCEEECCSSCCCCCCS-------------------------GGGSSCSSCCEEECCSCCCB
T ss_pred CCcCC-ccCc-c-cc--ccCCEEECCCCccCccCH-------------------------hHhCCCccCCEEECCCCccc
Confidence 55544 1221 1 11 344444444444433221 12455666777777777664
Q ss_pred C--CCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchh
Q 041782 363 G--KIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW 440 (821)
Q Consensus 363 ~--~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 440 (821)
. ..+..+..+ +|++|++++|.+++++.. ...+++.+++++|.+++..+..
T Consensus 161 ~~~~~~~~~~~l---~L~~L~l~~n~l~~l~~~-------------------------~~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 161 NSGFEPGAFDGL---KLNYLRISEAKLTGIPKD-------------------------LPETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp GGGSCTTSSCSC---CCSCCBCCSSBCSSCCSS-------------------------SCSSCSCCBCCSSCCCCCCTTS
T ss_pred cCCCCcccccCC---ccCEEECcCCCCCccCcc-------------------------ccCCCCEEECCCCcCCccCHHH
Confidence 2 333333222 344444444444433221 1123333333333333344445
Q ss_pred hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520 (821)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 520 (821)
+..+++|++|++++|++.+..+..+ ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+.
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSL------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGG------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred hcCCCCCCEEECCCCcCCcCChhHh------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 5555566666666666555443332 23455566666666555 4555555555566666666555555444443
Q ss_pred C------CCCCCEEEccCCcCc
Q 041782 521 T------LPELKVLMLQFNRFH 536 (821)
Q Consensus 521 ~------l~~L~~L~L~~N~l~ 536 (821)
. .++|+.|++++|++.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSC
T ss_pred ccccccccccccceEeecCccc
Confidence 2 234455555555443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.9e-29 Score=292.95 Aligned_cols=83 Identities=11% Similarity=0.001 Sum_probs=53.7
Q ss_pred ccccEEEcccccccC-ccccccccCCCCCEEeCCCcccCcc-hhhhhcCccCCCeEeCCCCcccccCCCCcc-ccCCccE
Q 041782 635 NFLTGIILSNNKLIG-KIPTSISELKGLNCLNLSGNNLLGH-IPSSLGNLTVLESLDLSNNNLSGEIPRQLA-ELTSLAV 711 (821)
Q Consensus 635 ~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~ 711 (821)
+.|+.|++++|++++ .++..+.++++|++|+|++|.+++. ++..+..+++|++|+|++|+++......+. .++.+..
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence 347777888877765 3444556778888888888887654 444456778888888888887765333332 4555555
Q ss_pred EEcccC
Q 041782 712 FDVSDN 717 (821)
Q Consensus 712 L~ls~N 717 (821)
..+..+
T Consensus 543 ~~~~~~ 548 (592)
T 3ogk_B 543 ELIPSR 548 (592)
T ss_dssp EEECCC
T ss_pred EEecCc
Confidence 555443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=257.72 Aligned_cols=282 Identities=21% Similarity=0.265 Sum_probs=205.7
Q ss_pred CCCCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCC
Q 041782 71 DRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL 150 (821)
Q Consensus 71 ~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l 150 (821)
...+|.|.|+ |+.. ++.++ .+|. .+. ++|++|++++|.+.+ +|... +.++
T Consensus 26 ~~~~C~~~~~-c~~~----------~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~--~~~~~------------~~~l 75 (353)
T 2z80_A 26 ASLSCDRNGI-CKGS----------SGSLN-SIPS--GLT--EAVKSLDLSNNRITY--ISNSD------------LQRC 75 (353)
T ss_dssp -CCEECTTSE-EECC----------STTCS-SCCT--TCC--TTCCEEECTTSCCCE--ECTTT------------TTTC
T ss_pred cCCCCCCCeE-eeCC----------CCCcc-cccc--ccc--ccCcEEECCCCcCcc--cCHHH------------hccC
Confidence 4678999998 7543 33333 2333 333 589999999998863 44321 7889
Q ss_pred CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcc-hhhhcCCCCC
Q 041782 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP-NWLANLNRLT 229 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~ 229 (821)
++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+ ..+..+++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEE---DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCCEEECCCCccCccCH---hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 999999999999998877 667888999999999999976555558899999999999999985433 4788999999
Q ss_pred EEEccCC-cCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECC
Q 041782 230 ILSLKSN-QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308 (821)
Q Consensus 230 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~ 308 (821)
+|++++| .+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+.. ++. ..+..+++|++|+++
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~-~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLE-IFVDVTSSVECLELR 230 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHH-HHHHHTTTEEEEEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chh-hhhhhcccccEEECC
Confidence 9999998 4776667889999999999999999998888999999999999999998853 333 345668899999999
Q ss_pred Ccccceeccccch-hccCCCeeEEecCCCCC-----chhhhhhcCCCccceEecccCCCCCCCCcc-hhccCCCCeeEEE
Q 041782 309 ANNLSLITRNTVN-IRLQNKFVFLGLASCNL-----KEFLDFLNDQDQLELLDLSANKIPGKIPGW-LLNVTTGNLQFVN 381 (821)
Q Consensus 309 ~n~l~~~~~~~~~-~~~~~~L~~L~L~~~~l-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~~L~~L~ 381 (821)
+|.+++.....+. ......++.++++++.+ ..+|+++..+++|++|++++|+++ .+|.. +..+ ++|++|+
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l--~~L~~L~ 307 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL--TSLQKIW 307 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC--TTCCEEE
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC--CCCCEEE
Confidence 9998876544332 12244555666666555 245666777777777777777776 34433 3444 5555555
Q ss_pred cCCCCCCCC
Q 041782 382 LSYNLITGF 390 (821)
Q Consensus 382 Ls~n~l~~~ 390 (821)
+++|.+++.
T Consensus 308 L~~N~~~~~ 316 (353)
T 2z80_A 308 LHTNPWDCS 316 (353)
T ss_dssp CCSSCBCCC
T ss_pred eeCCCccCc
Confidence 555555443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.2e-26 Score=245.33 Aligned_cols=233 Identities=25% Similarity=0.240 Sum_probs=191.3
Q ss_pred cccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccC--CccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782 421 ESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL--PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC 498 (821)
Q Consensus 421 ~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 498 (821)
.+++.+++++|.+....+..+.++++|++|++++|+++... |.. +..+++|++|++++|.++ .+|..+..+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~~~L~~L~Ls~n~i~-~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS------DFGTTSLKYLDLSFNGVI-TMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH------HHSCSCCCEEECCSCSEE-EEEEEEETC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc------cccccccCEEECCCCccc-cChhhcCCC
Confidence 34444444444444333445788999999999999987431 222 335789999999999998 577779999
Q ss_pred CCCCEEeCCCCcCCcCCc-hhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc-CCChhhhhccchh
Q 041782 499 TMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG-KLPSKYFQCWNAI 576 (821)
Q Consensus 499 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g-~ip~~~~~~l~~l 576 (821)
++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++ .+|.. +.
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~----- 172 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT----- 172 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-----
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH-Hh-----
Confidence 999999999999998765 678899999999999999988777665 668999999999999875 23321 11
Q ss_pred hhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccc
Q 041782 577 KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSIS 656 (821)
Q Consensus 577 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 656 (821)
.++.|+.|++++|++++..|..+.
T Consensus 173 --------------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~ 196 (306)
T 2z66_A 173 --------------------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFN 196 (306)
T ss_dssp --------------------------------------------------------TCTTCCEEECTTSCCCEECTTTTT
T ss_pred --------------------------------------------------------hCcCCCEEECCCCCcCCcCHHHhc
Confidence 134589999999999988899999
Q ss_pred cCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccC-CccEEEcccCcccccCC
Q 041782 657 ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT-SLAVFDVSDNNLTGQIP 724 (821)
Q Consensus 657 ~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP 724 (821)
++++|++|+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|++++.++
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 999999999999999988888899999999999999999999999999984 99999999999998654
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.8e-28 Score=284.85 Aligned_cols=419 Identities=14% Similarity=0.104 Sum_probs=235.9
Q ss_pred CccccCCCCCCEEEccCCcCC---CCcchhh------------hcCCCCCEEEccCCcCCCCCccccCCC--CCCCEEEc
Q 041782 195 PSWLMNLTQLTYINFDLNQLT---GPIPNWL------------ANLNRLTILSLKSNQLRGYLPSQIGSL--TQLTALDL 257 (821)
Q Consensus 195 p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L 257 (821)
+..+..+++|++|+++++... +.+|..+ ..+++|++|+|++|.+++..+..+... .+|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 334556777888888775321 1222211 256666777776666665444444442 23666666
Q ss_pred cCcc-CCC-CCCccccCCCCcCeeccccCCceeecc--cccccCCCCCCCeEECCCcccceeccccch--hccCCCeeEE
Q 041782 258 SCNQ-FQG-PVPSSISELKRLEYLDLHSNNLSGNVY--IEELLPKLKSLIVLFLSANNLSLITRNTVN--IRLQNKFVFL 331 (821)
Q Consensus 258 s~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L 331 (821)
++|. ++. .++....++++|++|++++|.+++... .......+++|++|++++|.++++....+. ...+++|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 6654 110 011112355666666666665543211 112234556666666666655432211110 1123444444
Q ss_pred ecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCc
Q 041782 332 GLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNK 411 (821)
Q Consensus 332 ~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 411 (821)
++++|.+..++..+..+++|++|+++.+...... .........+++|+.|+++++.
T Consensus 226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~------------------------~~~~~~l~~~~~L~~L~l~~~~ 281 (592)
T 3ogk_B 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM------------------------PEKYMNLVFPRKLCRLGLSYMG 281 (592)
T ss_dssp ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC------------------------TTSSSCCCCCTTCCEEEETTCC
T ss_pred eccCccHHHHHHHHhhhhHHHhhcccccccccch------------------------HHHHHHhhccccccccCccccc
Confidence 4444444444444444444444444332111000 0000112334555555555432
Q ss_pred ccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccC
Q 041782 412 LQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI 491 (821)
Q Consensus 412 l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~ 491 (821)
.+.+|..+..+++|++|++++|.+++.... ..+..+++|++|+++++-..+.+
T Consensus 282 ----------------------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~-----~~~~~~~~L~~L~L~~~~~~~~l 334 (592)
T 3ogk_B 282 ----------------------PNEMPILFPFAAQIRKLDLLYALLETEDHC-----TLIQKCPNLEVLETRNVIGDRGL 334 (592)
T ss_dssp ----------------------TTTGGGGGGGGGGCCEEEETTCCCCHHHHH-----HHHTTCTTCCEEEEEGGGHHHHH
T ss_pred ----------------------hhHHHHHHhhcCCCcEEecCCCcCCHHHHH-----HHHHhCcCCCEEeccCccCHHHH
Confidence 124555666777888888888876544221 12345788888888843333334
Q ss_pred chhhcCCCCCCEEeCCC-----------CcCCcCC-chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEcc--
Q 041782 492 PRSLANCTMLEFLDLGN-----------NQIADIF-PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLS-- 557 (821)
Q Consensus 492 p~~~~~l~~L~~L~L~~-----------n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls-- 557 (821)
+..+..+++|++|++++ |.+++.. +.....+++|++|+++.|.+++.....+. ..+++|+.|+++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG-TYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH-HHCCSCCEEEEEEC
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH-hhCCCCcEEEEeec
Confidence 44456778888888883 5555432 22234578888888877777654433321 237788888886
Q ss_pred --CCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccc
Q 041782 558 --HNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSN 635 (821)
Q Consensus 558 --~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (821)
.|.+++.-....+.. + ...++
T Consensus 414 ~~~n~l~~~p~~~~~~~---~------------------------------------------------------~~~~~ 436 (592)
T 3ogk_B 414 DREERITDLPLDNGVRS---L------------------------------------------------------LIGCK 436 (592)
T ss_dssp SCCSCCSSCCCHHHHHH---H------------------------------------------------------HHHCT
T ss_pred CCCccccCchHHHHHHH---H------------------------------------------------------HHhCC
Confidence 556653211100000 0 00134
Q ss_pred cccEEEccccc--ccCcccccccc-CCCCCEEeCCCcccCc-chhhhhcCccCCCeEeCCCCccccc-CCCCccccCCcc
Q 041782 636 FLTGIILSNNK--LIGKIPTSISE-LKGLNCLNLSGNNLLG-HIPSSLGNLTVLESLDLSNNNLSGE-IPRQLAELTSLA 710 (821)
Q Consensus 636 ~L~~L~Ls~N~--l~~~~p~~l~~-L~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~ 710 (821)
.|+.|++++|. +++..+..++. +++|++|+|++|++++ .++..+..+++|++|+|++|.+++. ++.....+++|+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 58899997543 67666666654 8999999999999987 4566778999999999999998765 444456799999
Q ss_pred EEEcccCccccc
Q 041782 711 VFDVSDNNLTGQ 722 (821)
Q Consensus 711 ~L~ls~N~l~g~ 722 (821)
+|++++|++++.
T Consensus 517 ~L~ls~n~it~~ 528 (592)
T 3ogk_B 517 YLWVQGYRASMT 528 (592)
T ss_dssp EEEEESCBCCTT
T ss_pred eeECcCCcCCHH
Confidence 999999998753
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.2e-26 Score=252.54 Aligned_cols=251 Identities=20% Similarity=0.141 Sum_probs=205.9
Q ss_pred cEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEec
Q 041782 403 VTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDL 482 (821)
Q Consensus 403 ~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~L 482 (821)
..++.++..++......+..++.|++++|.+++..+..|.++++|++|+|++|++++..|.. |.++++|++|+|
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~L 130 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA------FNGLASLNTLEL 130 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEEC
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh------ccCcccCCEEEC
Confidence 34444444444332223445556666666666666778899999999999999999876654 455899999999
Q ss_pred cCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCc
Q 041782 483 SHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562 (821)
Q Consensus 483 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 562 (821)
++|.+++..+..|..+++|++|+|++|+++.+.+..+..+++|++|++++|...+.++... ...+++|++|++++|+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTSCCS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCCccc
Confidence 9999997777789999999999999999998888889999999999999966555555432 256899999999999987
Q ss_pred cCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEc
Q 041782 563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIIL 642 (821)
Q Consensus 563 g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 642 (821)
+ +|. +. .++.|+.|+|
T Consensus 210 ~-~~~--~~-------------------------------------------------------------~l~~L~~L~L 225 (452)
T 3zyi_A 210 D-MPN--LT-------------------------------------------------------------PLVGLEELEM 225 (452)
T ss_dssp S-CCC--CT-------------------------------------------------------------TCTTCCEEEC
T ss_pred c-ccc--cc-------------------------------------------------------------ccccccEEEC
Confidence 3 442 10 1345899999
Q ss_pred ccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCccccc
Q 041782 643 SNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQ 722 (821)
Q Consensus 643 s~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 722 (821)
++|++++..|..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999876
Q ss_pred CC
Q 041782 723 IP 724 (821)
Q Consensus 723 iP 724 (821)
+.
T Consensus 306 C~ 307 (452)
T 3zyi_A 306 CD 307 (452)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.2e-26 Score=244.93 Aligned_cols=225 Identities=21% Similarity=0.261 Sum_probs=187.1
Q ss_pred CCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccE
Q 041782 400 TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKM 479 (821)
Q Consensus 400 ~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~ 479 (821)
+.+++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+ ..+++|++
T Consensus 81 ~~l~~L~L~~n~l~----------------------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~------~~l~~L~~ 131 (328)
T 4fcg_A 81 PGRVALELRSVPLP----------------------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM------QQFAGLET 131 (328)
T ss_dssp TTCCEEEEESSCCS----------------------SCCSCGGGGTTCSEEEEESSCCC-CCCSCG------GGGTTCSE
T ss_pred cceeEEEccCCCch----------------------hcChhhhhCCCCCEEECCCCCcc-chhHHH------hccCCCCE
Confidence 56677777776665 55667778899999999999988 777654 44788999
Q ss_pred EeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCC---------CCCCCEEEccCCcCcccCCCCCccCCCCC
Q 041782 480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGT---------LPELKVLMLQFNRFHGEIGEPDTGFVFPK 550 (821)
Q Consensus 480 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 550 (821)
|++++|.++ .+|..+..+++|++|++++|++.+.+|..+.. +++|++|++++|+++ .+|..+ ..+++
T Consensus 132 L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~ 207 (328)
T 4fcg_A 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQN 207 (328)
T ss_dssp EEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTT
T ss_pred EECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCC
Confidence 999999998 77888999999999999998888888877654 899999999999888 666654 66889
Q ss_pred CcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeec
Q 041782 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNY 630 (821)
Q Consensus 551 L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (821)
|++|++++|++++ +|.. +..
T Consensus 208 L~~L~L~~N~l~~-l~~~-l~~---------------------------------------------------------- 227 (328)
T 4fcg_A 208 LKSLKIRNSPLSA-LGPA-IHH---------------------------------------------------------- 227 (328)
T ss_dssp CCEEEEESSCCCC-CCGG-GGG----------------------------------------------------------
T ss_pred CCEEEccCCCCCc-Cchh-hcc----------------------------------------------------------
Confidence 9999999999884 5543 211
Q ss_pred ccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCcc
Q 041782 631 GKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLA 710 (821)
Q Consensus 631 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 710 (821)
++.|+.|++++|++.+.+|..++++++|++|+|++|++.+.+|..++++++|++|+|++|++.+.+|..+.++++|+
T Consensus 228 ---l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 228 ---LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp ---CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ---CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 33488899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCccc
Q 041782 711 VFDVSDNNLT 720 (821)
Q Consensus 711 ~L~ls~N~l~ 720 (821)
.+++..|.+.
T Consensus 305 ~l~l~~~~~~ 314 (328)
T 4fcg_A 305 IILVPPHLQA 314 (328)
T ss_dssp EEECCGGGSC
T ss_pred EEeCCHHHHH
Confidence 9999877665
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.1e-27 Score=253.64 Aligned_cols=251 Identities=22% Similarity=0.224 Sum_probs=200.9
Q ss_pred ccCCccEEEeccCcccCcCCCC-CcccceeeccCCcc-CCCCchhhh-------CCCCCcEEEcCCCcCcccCCccccCc
Q 041782 398 LWTDLVTLDLRSNKLQGPLPIP-PESTIHYLVSNNLL-TGKLAPWLC-------NLNSLRVLDLSHNFLSGVLPQCLSNS 468 (821)
Q Consensus 398 ~~~~L~~L~L~~n~l~~~~~~~-~~~l~~l~l~~n~~-~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l~~~ 468 (821)
..++|++|++++|.+ .+|.. +..++.+++++|.+ ...+|..+. ++++|++|++++|++++.+|..+.
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-- 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL-- 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS--
T ss_pred cCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH--
Confidence 345566677777766 33332 33467777777777 445666665 789999999999999998887641
Q ss_pred ccccCCCcccEEeccCccccccCchhhcCC-----CCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCC--C
Q 041782 469 KIFKNATNLKMIDLSHNLLQGRIPRSLANC-----TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIG--E 541 (821)
Q Consensus 469 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~ 541 (821)
+..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..++.+++|++|++++|++.+.++ .
T Consensus 117 --~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 117 --EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp --SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred --HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 25689999999999999977 8878776 999999999999999988999999999999999999876532 2
Q ss_pred CCccCCCCCCcEEEccCCcCcc--CCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeE
Q 041782 542 PDTGFVFPKLRIIDLSHNRFSG--KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSI 619 (821)
Q Consensus 542 ~~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 619 (821)
......+++|++|++++|++++ .++...+..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~----------------------------------------------- 226 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAA----------------------------------------------- 226 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT-----------------------------------------------
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhc-----------------------------------------------
Confidence 2222568999999999999973 222111111
Q ss_pred EEEecceeeecccccccccEEEcccccccCccc-cccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccccc
Q 041782 620 TMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIP-TSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGE 698 (821)
Q Consensus 620 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 698 (821)
++.|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|++++.
T Consensus 227 --------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 227 --------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp --------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred --------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence 3458999999999998876 55777999999999999999 7888776 8999999999999976
Q ss_pred CCCCccccCCccEEEcccCcccc
Q 041782 699 IPRQLAELTSLAVFDVSDNNLTG 721 (821)
Q Consensus 699 ~p~~l~~l~~L~~L~ls~N~l~g 721 (821)
|. +..+++|++|++++|++++
T Consensus 290 -p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 290 -PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CC-TTTSCEEEEEECTTCTTTC
T ss_pred -hh-HhhCCCCCEEeccCCCCCC
Confidence 66 9999999999999999986
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=246.69 Aligned_cols=106 Identities=24% Similarity=0.186 Sum_probs=53.1
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782 179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS 258 (821)
Q Consensus 179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 258 (821)
+|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444443333345555555555555555554444455555555555555555554333335555555555555
Q ss_pred CccCCCCCC-ccccCCCCcCeeccccC
Q 041782 259 CNQFQGPVP-SSISELKRLEYLDLHSN 284 (821)
Q Consensus 259 ~n~l~~~~p-~~l~~l~~L~~L~L~~n 284 (821)
+|.+++..+ ..+.++++|++|++++|
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCcccCchhhhccCCCCcEEECCCC
Confidence 555553222 24445555555555554
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=250.76 Aligned_cols=250 Identities=21% Similarity=0.160 Sum_probs=202.4
Q ss_pred EEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEecc
Q 041782 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLS 483 (821)
Q Consensus 404 ~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls 483 (821)
.++.++..++......+..++.+++++|.+.+..+..|.++++|++|+|++|++.+..+.. |.++++|++|+|+
T Consensus 47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~------~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA------FNGLANLNTLELF 120 (440)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG------GTTCSSCCEEECC
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh------ccCCccCCEEECC
Confidence 3444444443332222344555555555555566677889999999999999998775543 5568999999999
Q ss_pred CccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc
Q 041782 484 HNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG 563 (821)
Q Consensus 484 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g 563 (821)
+|.+++..+..|..+++|++|+|++|+++...+..+..+++|++|++++|...+.++... ...+++|++|++++|+++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCSSCCEEECTTSCCS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch-hhcccccCeecCCCCcCc-
Confidence 999997777789999999999999999999888889999999999999966555555432 256899999999999987
Q ss_pred CCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcc
Q 041782 564 KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILS 643 (821)
Q Consensus 564 ~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 643 (821)
.+|. +. .++.|+.|+|+
T Consensus 199 ~~~~--~~-------------------------------------------------------------~l~~L~~L~Ls 215 (440)
T 3zyj_A 199 EIPN--LT-------------------------------------------------------------PLIKLDELDLS 215 (440)
T ss_dssp SCCC--CT-------------------------------------------------------------TCSSCCEEECT
T ss_pred cccc--cC-------------------------------------------------------------CCcccCEEECC
Confidence 4542 10 13458999999
Q ss_pred cccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccC
Q 041782 644 NNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQI 723 (821)
Q Consensus 644 ~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 723 (821)
+|++++..|..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+
T Consensus 216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 99999988999999999999999999999999999999999999999999999888888999999999999999998765
Q ss_pred C
Q 041782 724 P 724 (821)
Q Consensus 724 P 724 (821)
.
T Consensus 296 ~ 296 (440)
T 3zyj_A 296 D 296 (440)
T ss_dssp T
T ss_pred C
Confidence 4
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.5e-26 Score=236.09 Aligned_cols=218 Identities=24% Similarity=0.270 Sum_probs=113.1
Q ss_pred CchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcc-ccccCchhhcCCCCCCEEeCCCCcCCcCC
Q 041782 437 LAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL-LQGRIPRSLANCTMLEFLDLGNNQIADIF 515 (821)
Q Consensus 437 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 515 (821)
.+..+..+++|++|++++|.+++..|..+ .++++|++|++++|. +....|..+..+++|++|++++|++++..
T Consensus 48 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 121 (285)
T 1ozn_A 48 PAASFRACRNLTILWLHSNVLARIDAAAF------TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTT------TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CHHHcccCCCCCEEECCCCccceeCHhhc------CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC
Confidence 33445556666666666666655544332 335566666666665 55444555666666666666666666555
Q ss_pred chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCc
Q 041782 516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL 595 (821)
Q Consensus 516 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l 595 (821)
+..+..+++|++|++++|++.+..+..+ ..+++|++|++++|+++ .+|...+..
T Consensus 122 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~----------------------- 175 (285)
T 1ozn_A 122 PGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRIS-SVPERAFRG----------------------- 175 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-EECTTTTTT-----------------------
T ss_pred HhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCccc-ccCHHHhcC-----------------------
Confidence 5555666666666666666554333323 34555666666665554 222211110
Q ss_pred ccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcch
Q 041782 596 NYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHI 675 (821)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~i 675 (821)
++.|+.|++++|++++..|..|.++++|++|+|++|++++..
T Consensus 176 --------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 176 --------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp --------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------------------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 122555555555555555555555555555555555555555
Q ss_pred hhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782 676 PSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 676 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 725 (821)
+..+..+++|++|++++|++.+..+.. .-...++.+..+.+.+.+..|.
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 555555555555555555555432211 1112233344455555555543
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.4e-28 Score=258.75 Aligned_cols=206 Identities=24% Similarity=0.256 Sum_probs=127.5
Q ss_pred CCCCCCEEecCCccccccCCccc--cCCCCCCEEEccCCcCCCCcchhhhcC-----CCCCEEEccCCcCCCCCccccCC
Q 041782 176 KQTELSWLALANINLIGEFPSWL--MNLTQLTYINFDLNQLTGPIPNWLANL-----NRLTILSLKSNQLRGYLPSQIGS 248 (821)
Q Consensus 176 ~l~~L~~L~L~~n~~~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~Ls~n~l~~~~p~~l~~ 248 (821)
++++|++|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|++++..|..|++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45566666666666665565554 5666666666666666654 5555555 66666666666666555566666
Q ss_pred CCCCCEEEccCccCCCC--CCccc--cCCCCcCeeccccCCceee--cccccccCCCCCCCeEECCCcccceeccccchh
Q 041782 249 LTQLTALDLSCNQFQGP--VPSSI--SELKRLEYLDLHSNNLSGN--VYIEELLPKLKSLIVLFLSANNLSLITRNTVNI 322 (821)
Q Consensus 249 l~~L~~L~Ls~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 322 (821)
+++|++|++++|++.+. .|..+ .++++|++|++++|++++. ++. ..+..+++|++|++++|.+++..+... .
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~ 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS-ALAAARVQLQGLDLSHNSLRDAAGAPS-C 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH-HHHHTTCCCSEEECTTSCCCSSCCCSC-C
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH-HHHhcCCCCCEEECCCCcCCcccchhh-h
Confidence 66666666666665543 12223 5666666666666666521 111 234456666666666666665442111 1
Q ss_pred ccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCC
Q 041782 323 RLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGF 390 (821)
Q Consensus 323 ~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~ 390 (821)
..+++|++|++++|.+..+|..+. ++|++|++++|++++. |. +..+ ++|++|++++|.+++.
T Consensus 250 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l--~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL--PQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS--CEEEEEECTTCTTTCC
T ss_pred hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhC--CCCCEEeccCCCCCCC
Confidence 134666777777777666666655 7888888888888766 55 6666 7888888888888754
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.3e-25 Score=248.86 Aligned_cols=251 Identities=20% Similarity=0.212 Sum_probs=206.7
Q ss_pred ceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCE
Q 041782 424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503 (821)
Q Consensus 424 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 503 (821)
..++.++..++ .+|..+. +++++|+|++|++++..|..+ .++++|++|++++|.+++..+..|.++++|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTF------RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTT------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHc------CCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 44555666655 4555443 689999999999988766654 55889999999999999888888999999999
Q ss_pred EeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhcccc
Q 041782 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQ 583 (821)
Q Consensus 504 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~ 583 (821)
|+|++|++++..+..+..+++|++|+|++|++....+..+ ..+++|++|++++|+..+.+|...|..
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~----------- 194 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG----------- 194 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT-----------
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC-----------
Confidence 9999999998888888999999999999999986554444 668999999999976655666443222
Q ss_pred chhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCE
Q 041782 584 LKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNC 663 (821)
Q Consensus 584 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 663 (821)
++.|+.|+|++|++++ +| .+..+++|++
T Consensus 195 --------------------------------------------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 195 --------------------------------------------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEE 222 (452)
T ss_dssp --------------------------------------------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCE
T ss_pred --------------------------------------------------CCCCCEEECCCCcccc-cc-cccccccccE
Confidence 3448999999999985 44 5889999999
Q ss_pred EeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC-CCCCCCCCCccCCCCC
Q 041782 664 LNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG-KQFNTFENSSFEGNPG 742 (821)
Q Consensus 664 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~ 742 (821)
|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+..+....+.+||+
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999654433 3456677788999999
Q ss_pred CCCCCC
Q 041782 743 LCGKPL 748 (821)
Q Consensus 743 lc~~~~ 748 (821)
.|++.+
T Consensus 303 ~CdC~~ 308 (452)
T 3zyi_A 303 NCDCDI 308 (452)
T ss_dssp ECSTTT
T ss_pred CCCCCc
Confidence 998764
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-25 Score=238.08 Aligned_cols=253 Identities=26% Similarity=0.342 Sum_probs=172.6
Q ss_pred CccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCC
Q 041782 74 CCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKL 153 (821)
Q Consensus 74 ~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L 153 (821)
.|.|.+|.|+.. +++ .+|. .+ .++|++|+|++|.+. .+|..+ +.++++|
T Consensus 6 ~C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~--~i~~~~------------~~~l~~L 54 (306)
T 2z66_A 6 SCSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQ--SLPHGV------------FDKLTQL 54 (306)
T ss_dssp EEETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCC--CCCTTT------------TTTCTTC
T ss_pred eeCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccC--ccCHhH------------hhccccC
Confidence 389999999643 111 2333 33 378999999999885 366543 6788899
Q ss_pred CEEEcCCCCCCCCC--CCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcc-hhhhcCCCCCE
Q 041782 154 KCLELSQNNFSSPH--SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP-NWLANLNRLTI 230 (821)
Q Consensus 154 ~~L~Ls~n~~~~~~--~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~ 230 (821)
++|+|++|.++... + ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++
T Consensus 55 ~~L~L~~n~l~~~~~~~---~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (306)
T 2z66_A 55 TKLSLSSNGLSFKGCCS---QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130 (306)
T ss_dssp SEEECCSSCCCEEEEEE---HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCE
T ss_pred CEEECCCCccCcccCcc---cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCE
Confidence 99999998887432 3 44556788888888888775 466667788888888888888775544 56777788888
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCccCCC-CCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG-PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA 309 (821)
Q Consensus 231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~ 309 (821)
|++++|.+++..+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSH 208 (306)
T ss_dssp EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTT
T ss_pred EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH--HHhcCCCCCCEEECCC
Confidence 8888888777777777777888888888887765 466677777777777777777765433 2356666666666666
Q ss_pred cccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCC
Q 041782 310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG 389 (821)
Q Consensus 310 n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~ 389 (821)
|.++.+... .+..+++|++|++++|++.+..|..+..+. ++|++|++++|.+++
T Consensus 209 N~l~~~~~~-------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 209 NNFFSLDTF-------------------------PYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCSBCCSG-------------------------GGTTCTTCCEEECTTSCCCBCSSSSCCCCC-TTCCEEECTTCCEEC
T ss_pred CccCccChh-------------------------hccCcccCCEeECCCCCCcccCHHHHHhhh-ccCCEEEccCCCeec
Confidence 666543321 244566677777777777666665555441 245555555555543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=247.86 Aligned_cols=251 Identities=23% Similarity=0.250 Sum_probs=207.9
Q ss_pred ceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCE
Q 041782 424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503 (821)
Q Consensus 424 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 503 (821)
..++..+..++ .+|..+. ++++.|+|++|++.+..+.. |.++++|++|+|++|.+++..+..|.++++|++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~------~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNS------FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTT------TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHH------hhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 45555666655 4565553 67999999999998776654 456899999999999999888888999999999
Q ss_pred EeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhcccc
Q 041782 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQ 583 (821)
Q Consensus 504 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~ 583 (821)
|+|++|++++..+..+..+++|++|+|++|++....+..+ ..+++|++|++++|+..+.++...|..
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~----------- 183 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG----------- 183 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT-----------
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc-----------
Confidence 9999999998888889999999999999999986555455 668999999999976655666443322
Q ss_pred chhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCE
Q 041782 584 LKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNC 663 (821)
Q Consensus 584 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 663 (821)
++.|+.|+|++|+++ .+| .+..+++|++
T Consensus 184 --------------------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 184 --------------------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDE 211 (440)
T ss_dssp --------------------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCE
T ss_pred --------------------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCE
Confidence 345899999999998 556 4889999999
Q ss_pred EeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC-CCCCCCCCCccCCCCC
Q 041782 664 LNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG-KQFNTFENSSFEGNPG 742 (821)
Q Consensus 664 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~ 742 (821)
|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|++|++++|++++..+.. ..+..+....+.+||+
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999655443 3456677788999999
Q ss_pred CCCCCC
Q 041782 743 LCGKPL 748 (821)
Q Consensus 743 lc~~~~ 748 (821)
.|++.+
T Consensus 292 ~CdC~l 297 (440)
T 3zyj_A 292 NCNCDI 297 (440)
T ss_dssp ECSSTT
T ss_pred cCCCCc
Confidence 998754
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=6.5e-26 Score=236.99 Aligned_cols=212 Identities=24% Similarity=0.245 Sum_probs=185.9
Q ss_pred CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCc-CCcCCchhhCCC
Q 041782 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ-IADIFPSWLGTL 522 (821)
Q Consensus 444 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l 522 (821)
.++|++|++++|++++..+.. |..+++|++|++++|.+++..|..|..+++|++|++++|+ +....+..+..+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAAS------FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTT------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCcCCccCHHH------cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 468999999999999876554 4558999999999999998889999999999999999997 888888999999
Q ss_pred CCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCc
Q 041782 523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS 602 (821)
Q Consensus 523 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 602 (821)
++|++|++++|.+.+..+..+ ..+++|++|++++|+++ .+|...+..
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~------------------------------ 151 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD------------------------------ 151 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT------------------------------
T ss_pred cCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccc-ccCHhHhcc------------------------------
Confidence 999999999999997666655 67899999999999997 444332221
Q ss_pred cccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCc
Q 041782 603 SAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL 682 (821)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l 682 (821)
++.|+.|++++|++++..+..+.++++|++|+|++|++++..|..|+++
T Consensus 152 -------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 152 -------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp -------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred -------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 3348999999999997777789999999999999999999999999999
Q ss_pred cCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782 683 TVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 683 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 725 (821)
++|++|++++|++++..+..+..+++|++|++++|++.+.++.
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 9999999999999987777899999999999999999987664
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-26 Score=245.34 Aligned_cols=266 Identities=25% Similarity=0.242 Sum_probs=155.0
Q ss_pred CeeEEecCCCCCchhh-hhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEE
Q 041782 327 KFVFLGLASCNLKEFL-DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL 405 (821)
Q Consensus 327 ~L~~L~L~~~~l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 405 (821)
+++..+++.+.+...+ ..+..+++|++|++++|++.+..|..+..+ ++|++|++++|.+++..+ +..+++|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD---LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC--TTCCEEECTTSCCEEEEE---ETTCTTCCEE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC--CcCCEEECCCCcCCcchh---hhhcCCCCEE
Confidence 3455666666664443 344566789999999999887777777777 777888887777765443 3445556666
Q ss_pred EeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCc
Q 041782 406 DLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN 485 (821)
Q Consensus 406 ~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n 485 (821)
++++|.+++. ...++|++|++++|++++..+.. +++|++|++++|
T Consensus 86 ~Ls~n~l~~l--------------------------~~~~~L~~L~l~~n~l~~~~~~~---------~~~L~~L~l~~N 130 (317)
T 3o53_A 86 DLNNNYVQEL--------------------------LVGPSIETLHAANNNISRVSCSR---------GQGKKNIYLANN 130 (317)
T ss_dssp ECCSSEEEEE--------------------------EECTTCCEEECCSSCCSEEEECC---------CSSCEEEECCSS
T ss_pred ECcCCccccc--------------------------cCCCCcCEEECCCCccCCcCccc---------cCCCCEEECCCC
Confidence 6665555421 11245566666666555443221 344555555555
Q ss_pred cccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC-CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccC
Q 041782 486 LLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG-TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564 (821)
Q Consensus 486 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ 564 (821)
.+++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.+++.. .. ..+++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~---~~l~~-------------- 192 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQ---VVFAK-------------- 192 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CC---CCCTT--------------
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cc---ccccc--------------
Confidence 55544444555555555555555555554443332 3444444444444444221 11 11333
Q ss_pred CChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEccc
Q 041782 565 LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSN 644 (821)
Q Consensus 565 ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 644 (821)
|+.|+|++
T Consensus 193 ------------------------------------------------------------------------L~~L~Ls~ 200 (317)
T 3o53_A 193 ------------------------------------------------------------------------LKTLDLSS 200 (317)
T ss_dssp ------------------------------------------------------------------------CCEEECCS
T ss_pred ------------------------------------------------------------------------CCEEECCC
Confidence 55566666
Q ss_pred ccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccc-ccCCCCccccCCccEEEcc-cCccccc
Q 041782 645 NKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS-GEIPRQLAELTSLAVFDVS-DNNLTGQ 722 (821)
Q Consensus 645 N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~ 722 (821)
|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..+++|+.++++ .+.+.|.
T Consensus 201 N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp SCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 66653 3334666677777777777776 45666667777777777777776 5566666677777777777 3455554
Q ss_pred CC
Q 041782 723 IP 724 (821)
Q Consensus 723 iP 724 (821)
.|
T Consensus 279 ~~ 280 (317)
T 3o53_A 279 NE 280 (317)
T ss_dssp SS
T ss_pred ch
Confidence 44
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.6e-24 Score=247.93 Aligned_cols=79 Identities=30% Similarity=0.424 Sum_probs=41.5
Q ss_pred ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD 716 (821)
Q Consensus 637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 716 (821)
|+.|++++|++++ +| ..+++|++|+|++|+++ .+|. .+++|++|+|++|+|+ .+|..+.++++|+.|++++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 4555555555553 33 23355555555555555 3333 3455555555555555 4455555555555555555
Q ss_pred CcccccCC
Q 041782 717 NNLTGQIP 724 (821)
Q Consensus 717 N~l~g~iP 724 (821)
|++++.+|
T Consensus 294 N~l~~~~~ 301 (622)
T 3g06_A 294 NPLSERTL 301 (622)
T ss_dssp CCCCHHHH
T ss_pred CCCCCcCH
Confidence 55555444
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.6e-24 Score=221.63 Aligned_cols=218 Identities=26% Similarity=0.303 Sum_probs=183.5
Q ss_pred CCCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCC
Q 041782 72 RDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT 151 (821)
Q Consensus 72 ~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~ 151 (821)
.++|.|.|+.|.-. +.++.++++++.++. +|. .+. ++|++|+|++|.+.. +|... +.+++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~--~~~~~------------~~~l~ 61 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSS--LPSKA------------FHRLT 61 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSC--CCTTS------------SSSCT
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCe--eCHHH------------hcCCC
Confidence 47999999999643 456789999998874 443 333 689999999999863 44321 78899
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
+|++|+|++|.++...+ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus 62 ~L~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPA---GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp TCCEEECCSSCCSCCCT---TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCccCeeCh---hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 99999999999998776 556789999999999999987767778999999999999999998888889999999999
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 311 (821)
++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++++ ++. ..+..+++|+.|++++|.
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCT-TTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCH-HHhccccCCCEEEecCCC
Confidence 999999997766778999999999999999998777778999999999999999885 333 457889999999999998
Q ss_pred cce
Q 041782 312 LSL 314 (821)
Q Consensus 312 l~~ 314 (821)
+..
T Consensus 217 ~~c 219 (270)
T 2o6q_A 217 WDC 219 (270)
T ss_dssp BCC
T ss_pred eeC
Confidence 754
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-26 Score=243.73 Aligned_cols=152 Identities=22% Similarity=0.199 Sum_probs=93.1
Q ss_pred CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782 349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV 428 (821)
Q Consensus 349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l 428 (821)
++|++|++++|++++..+..+..+ ++|++|++++|.+++..+......+++|++|++++|.+++.
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~------------- 184 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV------------- 184 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGG--SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-------------
T ss_pred CCCCEEECCCCCCCCccchhhhcc--CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-------------
Confidence 445555555555554444445444 55666666666665554433333456666666666665431
Q ss_pred cCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCC
Q 041782 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN 508 (821)
Q Consensus 429 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 508 (821)
+ ....+++|++|++++|++++..+. +..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus 185 ---------~-~~~~l~~L~~L~Ls~N~l~~l~~~-------~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 185 ---------K-GQVVFAKLKTLDLSSNKLAFMGPE-------FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp ---------E-CCCCCTTCCEEECCSSCCCEECGG-------GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred ---------c-cccccccCCEEECCCCcCCcchhh-------hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 1 112356777777777777654322 334677777777777777 4566677777777777777
Q ss_pred CcCC-cCCchhhCCCCCCCEEEccCC
Q 041782 509 NQIA-DIFPSWLGTLPELKVLMLQFN 533 (821)
Q Consensus 509 n~l~-~~~~~~l~~l~~L~~L~L~~N 533 (821)
|++. +..+.++..+++|+.+++++|
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCccCcCHHHHHhccccceEEECCCc
Confidence 7777 556677777777777777744
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.4e-23 Score=240.15 Aligned_cols=268 Identities=24% Similarity=0.269 Sum_probs=172.0
Q ss_pred CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 230 (821)
.++++|++++|.++.. | ..+. ++|++|++++|.+. .+|. .+++|++|+|++|.++ .+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~~l-p---~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-P---DCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCSCC-C---SCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCE
T ss_pred CCCcEEEecCCCcCcc-C---hhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCE
Confidence 4699999999999844 4 2222 68888888888875 4555 5678888888888877 4554 5677888
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCc
Q 041782 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN 310 (821)
Q Consensus 231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n 310 (821)
|++++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+++ ++ ..+++|+.|++++|
T Consensus 106 L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~-----~~~~~L~~L~L~~N 171 (622)
T 3g06_A 106 LSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP-----ALPSELCKLWAYNN 171 (622)
T ss_dssp EEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSS
T ss_pred EECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cC-----CccCCCCEEECCCC
Confidence 8888887774 343 56777888888887774 4443 3677777777777653 11 12345566666665
Q ss_pred ccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCC
Q 041782 311 NLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGF 390 (821)
Q Consensus 311 ~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~ 390 (821)
.++.+ | ..+++|+.|++++|.+++ +|.. . ++|+.|++++|.++.+
T Consensus 172 ~l~~l--------------------------~---~~~~~L~~L~Ls~N~l~~-l~~~---~--~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 172 QLTSL--------------------------P---MLPSGLQELSVSDNQLAS-LPTL---P--SELYKLWAYNNRLTSL 216 (622)
T ss_dssp CCSCC--------------------------C---CCCTTCCEEECCSSCCSC-CCCC---C--TTCCEEECCSSCCSSC
T ss_pred CCCCC--------------------------c---ccCCCCcEEECCCCCCCC-CCCc---c--chhhEEECcCCccccc
Confidence 55543 2 223556666666666653 2321 1 4566666666666654
Q ss_pred CCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCccc
Q 041782 391 DRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI 470 (821)
Q Consensus 391 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~ 470 (821)
+. .+++|++|++++|++++ +| ..+++|++|++++|+++. +|.
T Consensus 217 ~~-----~~~~L~~L~Ls~N~L~~----------------------lp---~~l~~L~~L~Ls~N~L~~-lp~------- 258 (622)
T 3g06_A 217 PA-----LPSGLKELIVSGNRLTS----------------------LP---VLPSELKELMVSGNRLTS-LPM------- 258 (622)
T ss_dssp CC-----CCTTCCEEECCSSCCSC----------------------CC---CCCTTCCEEECCSSCCSC-CCC-------
T ss_pred CC-----CCCCCCEEEccCCccCc----------------------CC---CCCCcCcEEECCCCCCCc-CCc-------
Confidence 32 12556666666665542 22 234667777777777763 333
Q ss_pred ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCC
Q 041782 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522 (821)
Q Consensus 471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 522 (821)
.+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++..|..+..+
T Consensus 259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 1467777777777777 567777777777788888777777766655543
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=5.4e-27 Score=272.51 Aligned_cols=443 Identities=14% Similarity=0.090 Sum_probs=222.9
Q ss_pred CCCCCCCCEEEcCCCCCCC---CCCCCc--------h-hccCCCCCCEEecCCccccccCCcccc-CCCCCCEEEccCC-
Q 041782 147 LGNLTKLKCLELSQNNFSS---PHSASF--------S-WIAKQTELSWLALANINLIGEFPSWLM-NLTQLTYINFDLN- 212 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~---~~~~~~--------~-~l~~l~~L~~L~L~~n~~~~~~p~~l~-~l~~L~~L~Ls~n- 212 (821)
+..+++|++|+++++.... ..|..+ . ....+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 6778999999999875321 111110 0 123456666666666666555444443 4666666666666
Q ss_pred cCCCC-cchhhhcCCCCCEEEccCCcCCCCCccccC----CCCCCCEEEccCccCCCCCCcc----ccCCCCcCeecccc
Q 041782 213 QLTGP-IPNWLANLNRLTILSLKSNQLRGYLPSQIG----SLTQLTALDLSCNQFQGPVPSS----ISELKRLEYLDLHS 283 (821)
Q Consensus 213 ~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~ 283 (821)
.++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. ....... +.++++|++|++++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 33321 333344566666666666665544333332 44566666666654 1111111 12345666666665
Q ss_pred CC-ceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceE-ecccCCC
Q 041782 284 NN-LSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELL-DLSANKI 361 (821)
Q Consensus 284 n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L-~Ls~n~l 361 (821)
|. +.+ + +..+..+++|++|+++.+... +..+.+..++..+..+++|+.| .+.+...
T Consensus 221 ~~~~~~-l--~~~~~~~~~L~~L~l~~~~~~-------------------~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 221 AVPLEK-L--ATLLQRAPQLEELGTGGYTAE-------------------VRPDVYSGLSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp TSCHHH-H--HHHHHHCTTCSEEECSBCCCC-------------------CCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred CCcHHH-H--HHHHhcCCcceEcccccccCc-------------------cchhhHHHHHHHHhcCCCcccccCCcccch
Confidence 52 222 1 123445555555554433210 1112223455566677777776 3332211
Q ss_pred CCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhh
Q 041782 362 PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWL 441 (821)
Q Consensus 362 ~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l 441 (821)
+.++..+..+ ++|++|++++|.+++.........+++|++|++++| +... .++...
T Consensus 279 -~~l~~~~~~~--~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~--------------------~l~~l~ 334 (594)
T 2p1m_B 279 -AYLPAVYSVC--SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA--------------------GLEVLA 334 (594)
T ss_dssp -GGGGGGHHHH--TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH--------------------HHHHHH
T ss_pred -hhHHHHHHhh--CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH--------------------HHHHHH
Confidence 1223333334 556666666555443221111223445555555544 2100 011112
Q ss_pred hCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhh-cCCCCCCEEeCCCCcCCcCCchhhC
Q 041782 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL-ANCTMLEFLDLGNNQIADIFPSWLG 520 (821)
Q Consensus 442 ~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l~ 520 (821)
..+++|++|+++++.-.| ....+.+++.....+ ..+++|++|+++.|.+++.....+.
T Consensus 335 ~~~~~L~~L~L~~~~~~g---------------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFV---------------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp HHCTTCCEEEEECSCTTC---------------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred HhCCCCCEEEEecCcccc---------------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 234555555553221000 001223332222222 2356666666666666554444443
Q ss_pred -CCCCCCEEEcc--C----CcCcccCCCC----CccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhccc
Q 041782 521 -TLPELKVLMLQ--F----NRFHGEIGEP----DTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQD 589 (821)
Q Consensus 521 -~l~~L~~L~L~--~----N~l~~~~~~~----~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~ 589 (821)
.+++|+.|+++ + +.++. .|.. .....+++|+.|++++ .+++..+..+.
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~------------------- 452 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG------------------- 452 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH-------------------
T ss_pred hhCCCcceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH-------------------
Confidence 35666666666 2 23321 1100 0013467788888866 44432111100
Q ss_pred CCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccccc-ccCCCCCEEeCCC
Q 041782 590 QPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI-SELKGLNCLNLSG 668 (821)
Q Consensus 590 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l-~~L~~L~~L~Ls~ 668 (821)
..++.|+.|+|++|.+++..+..+ .++++|++|+|++
T Consensus 453 ------------------------------------------~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 453 ------------------------------------------TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp ------------------------------------------HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred ------------------------------------------HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 012347888888888876655555 6688899999999
Q ss_pred cccCcchhh-hhcCccCCCeEeCCCCcccccCCCCc-cccCCccEEEcccCccc
Q 041782 669 NNLLGHIPS-SLGNLTVLESLDLSNNNLSGEIPRQL-AELTSLAVFDVSDNNLT 720 (821)
Q Consensus 669 N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~ 720 (821)
|.+++..+. .+..+++|++|++++|+++......+ ..++.|+...+..+.-.
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 988765544 44568889999999998865444444 45677777666665443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.7e-25 Score=246.39 Aligned_cols=148 Identities=26% Similarity=0.187 Sum_probs=81.6
Q ss_pred CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782 349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV 428 (821)
Q Consensus 349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l 428 (821)
++|++|+|++|.+.+..|..+..+ ++|++|+|++|.+++..+ +..+++|++|++++|.+++.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l------------- 95 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL------------- 95 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEE-------------
T ss_pred CCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCC-------------
Confidence 478888888888887767777766 667777777777665443 34445555555555554421
Q ss_pred cCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCC
Q 041782 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN 508 (821)
Q Consensus 429 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 508 (821)
...++|++|++++|.+++..+.. +++|+.|++++|.+++..|..+..+++|++|+|++
T Consensus 96 -------------~~~~~L~~L~L~~N~l~~~~~~~---------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 96 -------------LVGPSIETLHAANNNISRVSCSR---------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp -------------EECTTCCEEECCSSCCCCEEECC---------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred -------------CCCCCcCEEECcCCcCCCCCccc---------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 11245555555555555443221 34455555555555544444555555555555555
Q ss_pred CcCCcCCchhhC-CCCCCCEEEccCCcCc
Q 041782 509 NQIADIFPSWLG-TLPELKVLMLQFNRFH 536 (821)
Q Consensus 509 n~l~~~~~~~l~-~l~~L~~L~L~~N~l~ 536 (821)
|.+++..|..+. .+++|++|+|++|.++
T Consensus 154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 555554444443 3444555555544444
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=8.1e-27 Score=270.99 Aligned_cols=415 Identities=14% Similarity=0.112 Sum_probs=242.8
Q ss_pred cccCCCCCCEEEccCCcCCC---Cc------------chhhhcCCCCCEEEccCCcCCCCCccccC-CCCCCCEEEccCc
Q 041782 197 WLMNLTQLTYINFDLNQLTG---PI------------PNWLANLNRLTILSLKSNQLRGYLPSQIG-SLTQLTALDLSCN 260 (821)
Q Consensus 197 ~l~~l~~L~~L~Ls~n~l~~---~~------------p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n 260 (821)
.+..+++|++|+++++.... .. +.....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 35567888888888875221 11 12234567778888877777765555554 5777777777777
Q ss_pred -cCCCC-CCccccCCCCcCeeccccCCceeecc--cccccCCCCCCCeEECCCcccceeccccch--hccCCCeeEEecC
Q 041782 261 -QFQGP-VPSSISELKRLEYLDLHSNNLSGNVY--IEELLPKLKSLIVLFLSANNLSLITRNTVN--IRLQNKFVFLGLA 334 (821)
Q Consensus 261 -~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~L~ 334 (821)
.+++. ++..+.++++|++|++++|.+++..+ .......+++|++|++++|. ..+....+. ...+++|+.|+++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence 34321 23333467777777777777654221 11223356677777777665 111111110 1124555556555
Q ss_pred CCC-CchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEE-eccCcc
Q 041782 335 SCN-LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD-LRSNKL 412 (821)
Q Consensus 335 ~~~-l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~-L~~n~l 412 (821)
+|. +..++..+..+++|++|+++.+... +..+.+.+... .+..+++|+.|. +.+..
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-------------------~~~~~~~~l~~--~l~~~~~L~~Ls~~~~~~- 277 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAE-------------------VRPDVYSGLSV--ALSGCKELRCLSGFWDAV- 277 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCC-------------------CCHHHHHHHHH--HHHTCTTCCEEECCBTCC-
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCc-------------------cchhhHHHHHH--HHhcCCCcccccCCcccc-
Confidence 552 2445555555555555555443210 00011111111 123344555552 11110
Q ss_pred cCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccccc-C
Q 041782 413 QGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR-I 491 (821)
Q Consensus 413 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~ 491 (821)
.+.++..+..+++|++|++++|.+++..... .+..+++|++|++++| +.+. +
T Consensus 278 ---------------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~-----~~~~~~~L~~L~l~~~-~~~~~l 330 (594)
T 2p1m_B 278 ---------------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVK-----LLCQCPKLQRLWVLDY-IEDAGL 330 (594)
T ss_dssp ---------------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHH-----HHTTCTTCCEEEEEGG-GHHHHH
T ss_pred ---------------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHH-----HHhcCCCcCEEeCcCc-cCHHHH
Confidence 1133444556788888888888866432211 2345788888888887 4322 2
Q ss_pred chhhcCCCCCCEEeCC---------CCcCCcCCchhhC-CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEcc--C-
Q 041782 492 PRSLANCTMLEFLDLG---------NNQIADIFPSWLG-TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLS--H- 558 (821)
Q Consensus 492 p~~~~~l~~L~~L~L~---------~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls--~- 558 (821)
+.....+++|++|+++ .+.+++.....+. .+++|++|.+..|.+++....... ..+++|+.|+++ +
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-RNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-HHCTTCCEEEEEESST
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-hhCCCcceeEeecccC
Confidence 3333457888888883 3455544333333 478888888888877654322221 236888888888 3
Q ss_pred ---CcCccCCCh-hhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeeccccc
Q 041782 559 ---NRFSGKLPS-KYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVS 634 (821)
Q Consensus 559 ---N~l~g~ip~-~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (821)
|.++ ..|. ..+.. ....+
T Consensus 410 ~~~~~l~-~~~~~~~~~~---------------------------------------------------------l~~~~ 431 (594)
T 2p1m_B 410 KAPDYLT-LEPLDIGFGA---------------------------------------------------------IVEHC 431 (594)
T ss_dssp TCCCTTT-CCCTHHHHHH---------------------------------------------------------HHHHC
T ss_pred CCccccc-CCchhhHHHH---------------------------------------------------------HHhhC
Confidence 3343 2221 10000 00113
Q ss_pred ccccEEEcccccccCcccccccc-CCCCCEEeCCCcccCcchhhhh-cCccCCCeEeCCCCcccccCCC-CccccCCccE
Q 041782 635 NFLTGIILSNNKLIGKIPTSISE-LKGLNCLNLSGNNLLGHIPSSL-GNLTVLESLDLSNNNLSGEIPR-QLAELTSLAV 711 (821)
Q Consensus 635 ~~L~~L~Ls~N~l~~~~p~~l~~-L~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~ 711 (821)
+.|+.|++++ .+++..+..++. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 4589999988 777666666765 8999999999999988777666 7799999999999999765544 4456899999
Q ss_pred EEcccCcccc
Q 041782 712 FDVSDNNLTG 721 (821)
Q Consensus 712 L~ls~N~l~g 721 (821)
|++++|+++.
T Consensus 511 L~l~~~~~~~ 520 (594)
T 2p1m_B 511 LWMSSCSVSF 520 (594)
T ss_dssp EEEESSCCBH
T ss_pred EeeeCCCCCH
Confidence 9999999853
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.3e-23 Score=215.33 Aligned_cols=212 Identities=25% Similarity=0.205 Sum_probs=172.6
Q ss_pred CCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCC
Q 041782 445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524 (821)
Q Consensus 445 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 524 (821)
++|++|++++|++++..+.. |.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYS------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTT------TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCcccccCHhH------hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 46889999999888775544 445788999999999988777778888999999999999999888888889999
Q ss_pred CCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc-CCChhhhhccchhhhhccccchhcccCCCCCcccccCCcc
Q 041782 525 LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG-KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSS 603 (821)
Q Consensus 525 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g-~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 603 (821)
|++|++++|.+.+..+..+ ..+++|++|++++|.+++ .+|.. +..
T Consensus 102 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~------------------------------- 147 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN------------------------------- 147 (276)
T ss_dssp CCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG-------------------------------
T ss_pred ccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc-------------------------------
Confidence 9999999999886555444 668899999999999875 24532 211
Q ss_pred ccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCC----EEeCCCcccCcchhhhh
Q 041782 604 AYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLN----CLNLSGNNLLGHIPSSL 679 (821)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~----~L~Ls~N~l~~~ip~~l 679 (821)
++.|+.|++++|++++..+..+..+.+|+ +|++++|++++..+..+
T Consensus 148 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 148 ------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp ------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred ------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence 33488899999999987778888877777 89999999997666655
Q ss_pred cCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCC
Q 041782 680 GNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGK 727 (821)
Q Consensus 680 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 727 (821)
. ..+|+.|+|++|++++..+..|..+++|++|++++|+++|.+|.-.
T Consensus 198 ~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 198 K-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp C-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred C-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 4 4589999999999998777778999999999999999999887543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.6e-24 Score=241.53 Aligned_cols=218 Identities=22% Similarity=0.154 Sum_probs=132.2
Q ss_pred CCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCC
Q 041782 150 LTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLT 229 (821)
Q Consensus 150 l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 229 (821)
+++|++|+|++|.+++..| ..+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+++.. ..++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA---ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG---GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred CCCccEEEeeCCcCCCCCH---HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3466666666666666655 555666666666666666655444 666666777777766666322 226667
Q ss_pred EEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782 230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA 309 (821)
Q Consensus 230 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~ 309 (821)
+|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..+. .....+++|++|++++
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQY 178 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTT
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCC
Confidence 777777766654433 345667777777777666666666667777777777776654433 3233566777777777
Q ss_pred cccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCC
Q 041782 310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT 388 (821)
Q Consensus 310 n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~ 388 (821)
|.+++++... .+++|+.|++++|.+..+|..+..+++|+.|++++|.+++ +|..+..+ ++|+.|++++|.+.
T Consensus 179 N~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l--~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NFIYDVKGQV----VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFS--QNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEEECCC----CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC--TTCCEEECTTCCBC
T ss_pred Cccccccccc----cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccC--CCCCEEEcCCCCCc
Confidence 7766654322 2455555555555555555555666666666666666653 44445444 55666666666655
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.1e-22 Score=208.31 Aligned_cols=207 Identities=22% Similarity=0.263 Sum_probs=173.9
Q ss_pred CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCC
Q 041782 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525 (821)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 525 (821)
..+.+++++++++. +|..+ .+++++|++++|.+++..+..|..+++|++|++++|+++.+.+..+..+++|
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CCCEEEccCCCCCc-cCCCC--------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 57889999999884 56543 3578999999999987777789999999999999999998877778899999
Q ss_pred CEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccc
Q 041782 526 KVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAY 605 (821)
Q Consensus 526 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 605 (821)
++|++++|++.+..+..+ ..+++|++|++++|.+++ +|...|..
T Consensus 88 ~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~--------------------------------- 131 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLKS-LPPRVFDS--------------------------------- 131 (270)
T ss_dssp CEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCCC-CCTTTTTT---------------------------------
T ss_pred CEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccCe-eCHHHhCc---------------------------------
Confidence 999999999986544444 568999999999999974 33332221
Q ss_pred ccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCC
Q 041782 606 IFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVL 685 (821)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L 685 (821)
++.|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus 132 ----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 132 ----------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp ----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence 3448899999999997777779999999999999999998888889999999
Q ss_pred CeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782 686 ESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 686 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 725 (821)
++|+|++|++++..+..|..+++|+.|++++|++.+.++.
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 9999999999987777899999999999999999987653
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.5e-23 Score=211.84 Aligned_cols=206 Identities=23% Similarity=0.235 Sum_probs=173.5
Q ss_pred hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519 (821)
Q Consensus 440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l 519 (821)
....+++|+.|++++|.+... + .+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~-~-------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV-Q-------GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC-T-------TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccccceeeeeeCCCCcccc-c-------ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHh
Confidence 356688999999999988743 2 245689999999999999863 478899999999999999999888888
Q ss_pred CCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCccccc
Q 041782 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYIL 599 (821)
Q Consensus 520 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~ 599 (821)
+.+++|++|++++|++.+..+..+ ..+++|++|++++|++++ +|...+..
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~-~~~~~~~~--------------------------- 155 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQS-LPKGVFDK--------------------------- 155 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCC-CCTTTTTT---------------------------
T ss_pred cCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccCc-cCHHHhcc---------------------------
Confidence 999999999999999986655545 568999999999999984 44332221
Q ss_pred CCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhh
Q 041782 600 PSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSL 679 (821)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l 679 (821)
++.|+.|++++|++++..+..++++++|++|+|++|++++..|..|
T Consensus 156 ----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 156 ----------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 3348899999999998888888999999999999999999888889
Q ss_pred cCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC
Q 041782 680 GNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG 726 (821)
Q Consensus 680 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 726 (821)
+.+++|++|++++|.+.+..| .|+.++++.|+++|.+|..
T Consensus 202 ~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred hCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 999999999999999986544 6889999999999999864
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.1e-22 Score=210.70 Aligned_cols=210 Identities=25% Similarity=0.266 Sum_probs=165.0
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN 187 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~ 187 (821)
.+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--~~--------------~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS--VQ--------------GIQYLPNVRYLALGGNKLHDI-----SALKELTNLTYLILTG 94 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC--CT--------------TGGGCTTCCEEECTTSCCCCC-----GGGTTCTTCCEEECTT
T ss_pred ccccccceeeeeeCCCCccc--cc--------------ccccCCCCcEEECCCCCCCCc-----hhhcCCCCCCEEECCC
Confidence 56778888899998888752 22 267788889999998888764 4577888888888888
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782 188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267 (821)
Q Consensus 188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 267 (821)
|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 88887777778888888888888888887777778888888888888888887777777888888888888888887777
Q ss_pred ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND 347 (821)
Q Consensus 268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~ 347 (821)
..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+ .
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~--------------------------------~ 220 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWDC--------------------------------T 220 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCC--------------------------------C
T ss_pred HHhcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCccc--------------------------------c
Confidence 777888888888888888876433 446778888888888886542 3
Q ss_pred CCccceEecccCCCCCCCCcchhcc
Q 041782 348 QDQLELLDLSANKIPGKIPGWLLNV 372 (821)
Q Consensus 348 l~~L~~L~Ls~n~l~~~~p~~l~~~ 372 (821)
+++|+.|+++.|.++|.+|.+++.+
T Consensus 221 ~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CcHHHHHHHHHHhCCCcccCccccc
Confidence 4567777788888888877776655
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=6.8e-22 Score=205.37 Aligned_cols=206 Identities=24% Similarity=0.209 Sum_probs=111.0
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
+|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCH---hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45555555555554444 334445555555555555544444455566666666666666665555556666666666
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCCC-CCccccCCCCcCeeccccCCceeecccccccCCCCCCC----eEE
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGP-VPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLI----VLF 306 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~----~L~ 306 (821)
++++|.+++..+..+.++++|++|++++|.+++. +|..+.++++|++|++++|++++..+ ..+..+++|+ .|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG--GGGHHHHTCTTCCEEEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH--HHhhhhhhccccceeee
Confidence 6666666655454566666666666666666542 45666666666666666666654321 1233333333 666
Q ss_pred CCCcccceeccccchhccCCCeeEEecCCCCCchhhhh-hcCCCccceEecccCCCCCCC
Q 041782 307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDF-LNDQDQLELLDLSANKIPGKI 365 (821)
Q Consensus 307 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 365 (821)
+++|.++.+++..+. ..+|+.|++++|.+..+|.. +..+++|+.|++++|.+.+..
T Consensus 184 ls~n~l~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 184 LSLNPMNFIQPGAFK---EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCSSCCCEECTTSSC---SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cCCCcccccCccccC---CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 666666665544332 22444444444444333322 344555555555555555433
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=215.11 Aligned_cols=210 Identities=21% Similarity=0.200 Sum_probs=168.2
Q ss_pred CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCc----hhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIP----RSLANCTMLEFLDLGNNQIADIFPSWL 519 (821)
Q Consensus 444 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~l 519 (821)
+++|++|++++|++.+..|..+.. ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLE----ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSS----CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred cCceeEEEeeCCEeccchhhhhhh----ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 467999999999999888876411 457899999999999987655 445679999999999999999988999
Q ss_pred CCCCCCCEEEccCCcCccc--CCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCccc
Q 041782 520 GTLPELKVLMLQFNRFHGE--IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNY 597 (821)
Q Consensus 520 ~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~ 597 (821)
+.+++|++|+|++|++.+. ++.......+++|++|++++|+++ .+|.....-+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------------------------ 220 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA------------------------ 220 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH------------------------
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH------------------------
Confidence 9999999999999998753 322332256899999999999996 3332100000
Q ss_pred ccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccC---CCCCEEeCCCcccCcc
Q 041782 598 ILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISEL---KGLNCLNLSGNNLLGH 674 (821)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L---~~L~~L~Ls~N~l~~~ 674 (821)
..++.|+.|||++|++++.+|..+..+ ++|++|+|++|+++ .
T Consensus 221 ----------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~ 265 (310)
T 4glp_A 221 ----------------------------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-Q 265 (310)
T ss_dssp ----------------------------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-S
T ss_pred ----------------------------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-c
Confidence 013448999999999999889888877 69999999999999 7
Q ss_pred hhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccc
Q 041782 675 IPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG 721 (821)
Q Consensus 675 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 721 (821)
+|..+. ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 266 lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 266 VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 787764 8999999999999974 43 6788999999999999974
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.6e-22 Score=206.86 Aligned_cols=206 Identities=26% Similarity=0.301 Sum_probs=173.1
Q ss_pred hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520 (821)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 520 (821)
+.++++++++++++|.++. +|..+ .++++.|++++|.+++..+..|..+++|++|++++|++++..+ .+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~--------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL--------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DG 74 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC--------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CS
T ss_pred ccccCCccEEECCCCCCCc-CCCCC--------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CC
Confidence 5667899999999999984 45443 3689999999999998888899999999999999999988744 37
Q ss_pred CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccC
Q 041782 521 TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILP 600 (821)
Q Consensus 521 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~ 600 (821)
.+++|++|++++|++. .+|..+ ..+++|++|++++|+++ .+|...|..
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~l~~N~l~-~l~~~~~~~---------------------------- 122 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLG--QTLPALTVLDVSFNRLT-SLPLGALRG---------------------------- 122 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCT--TTCTTCCEEECCSSCCC-CCCSSTTTT----------------------------
T ss_pred CCCcCCEEECCCCcCC-cCchhh--ccCCCCCEEECCCCcCc-ccCHHHHcC----------------------------
Confidence 8999999999999998 556554 67899999999999998 444332222
Q ss_pred CccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhc
Q 041782 601 SSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG 680 (821)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~ 680 (821)
++.|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.
T Consensus 123 ---------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 123 ---------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp ---------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred ---------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 33488999999999987777889999999999999999977777789
Q ss_pred CccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccC
Q 041782 681 NLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQI 723 (821)
Q Consensus 681 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 723 (821)
.+++|++|+|++|+++ .+|..+..+.+|+.+++++|++.+.+
T Consensus 170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 9999999999999998 67888888889999999999998754
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.7e-22 Score=206.24 Aligned_cols=206 Identities=27% Similarity=0.277 Sum_probs=175.6
Q ss_pred ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCC
Q 041782 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550 (821)
Q Consensus 471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 550 (821)
+..+++++++++++|.++ .+|..+. +++++|++++|++++..+..+..+++|++|++++|.+++..+. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCc
Confidence 455789999999999998 5666554 7899999999999999889999999999999999999865432 56899
Q ss_pred CcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeec
Q 041782 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNY 630 (821)
Q Consensus 551 L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (821)
|++|++++|+++ .+|.. +.
T Consensus 79 L~~L~Ls~N~l~-~l~~~-~~----------------------------------------------------------- 97 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLL-GQ----------------------------------------------------------- 97 (290)
T ss_dssp CCEEECCSSCCS-SCCCC-TT-----------------------------------------------------------
T ss_pred CCEEECCCCcCC-cCchh-hc-----------------------------------------------------------
Confidence 999999999997 56532 11
Q ss_pred ccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCcc
Q 041782 631 GKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLA 710 (821)
Q Consensus 631 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 710 (821)
.++.|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+
T Consensus 98 --~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 98 --TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp --TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred --cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 134589999999999988888999999999999999999988888899999999999999999987777789999999
Q ss_pred EEEcccCcccccCCCC-CCCCCCCCCccCCCCCCCCCC
Q 041782 711 VFDVSDNNLTGQIPQG-KQFNTFENSSFEGNPGLCGKP 747 (821)
Q Consensus 711 ~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc~~~ 747 (821)
+|++++|+++ .+|.+ .....+....+.|||+.|++.
T Consensus 176 ~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred EEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 9999999999 56654 334456677789999999764
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.6e-22 Score=201.30 Aligned_cols=190 Identities=27% Similarity=0.322 Sum_probs=114.5
Q ss_pred CCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCC
Q 041782 73 DCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTK 152 (821)
Q Consensus 73 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~ 152 (821)
+||.|.|.+|... .+.++++++.+.. +|. .+. ++|++|+|++|.+.+. .|.. +.++++
T Consensus 3 ~Cp~~~gC~C~~~---~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~-------------~~~l~~ 60 (251)
T 3m19_A 3 TCETVTGCTCNEG---KKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDAT-------------FRGLTK 60 (251)
T ss_dssp -CHHHHSSEEEGG---GTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTT-------------TTTCTT
T ss_pred cCCCCCceEcCCC---CeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhH-------------hcCccc
Confidence 6899999999532 3356777776652 332 222 4667777777766431 1112 566667
Q ss_pred CCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEE
Q 041782 153 LKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILS 232 (821)
Q Consensus 153 L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 232 (821)
|++|+|++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 61 L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSA---GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCccCH---hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 7777777777666655 4455566666666666666555555556666666666666666654444556666666666
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCce
Q 041782 233 LKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287 (821)
Q Consensus 233 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 287 (821)
+++|++++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 6666666554445666666666666666666555555555566666666665554
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.2e-21 Score=200.36 Aligned_cols=211 Identities=21% Similarity=0.245 Sum_probs=130.3
Q ss_pred ccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEc
Q 041782 477 LKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDL 556 (821)
Q Consensus 477 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 556 (821)
.++++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|++|+|++|.+.+..+..+ ..+++|++|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEEC
Confidence 445555555554 3343332 355555555555555555555555666666666665554443333 44566666666
Q ss_pred cCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeeccccccc
Q 041782 557 SHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNF 636 (821)
Q Consensus 557 s~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (821)
++|+++ .+|...|.. ++.
T Consensus 91 ~~n~l~-~~~~~~~~~-------------------------------------------------------------l~~ 108 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDH-------------------------------------------------------------LTQ 108 (251)
T ss_dssp TTSCCC-CCCTTTTTT-------------------------------------------------------------CTT
T ss_pred CCCccc-ccChhHhcc-------------------------------------------------------------cCC
Confidence 666665 333222211 223
Q ss_pred ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD 716 (821)
Q Consensus 637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 716 (821)
|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 67777777777766666678888899999999999877777888889999999999999888777888889999999999
Q ss_pred CcccccCCCCCCCCCC------CCCccCCCCCCCCCCCCCCCCCC
Q 041782 717 NNLTGQIPQGKQFNTF------ENSSFEGNPGLCGKPLSRNCEIS 755 (821)
Q Consensus 717 N~l~g~iP~~~~~~~~------~~~~~~gn~~lc~~~~~~~c~~~ 755 (821)
|++++..+....+..+ ......|+ .+|+.|....|..+
T Consensus 189 N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 189 NQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp CCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 9998864432111111 11122343 36777777778644
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=6.7e-23 Score=221.70 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=45.6
Q ss_pred hhhhC-CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccC-------chhhcCCCCCCEEeCCCCc
Q 041782 439 PWLCN-LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI-------PRSLANCTMLEFLDLGNNQ 510 (821)
Q Consensus 439 ~~l~~-l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-------p~~~~~l~~L~~L~L~~n~ 510 (821)
..+.. .++|++|++++|.+++..+..+. ..+..+++|++|++++|.+.+.. +..+..+++|+.||+++|+
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLK--LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHH--HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHH--HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 34444 34777777777777665443322 23455677777777777754332 2345566677777777777
Q ss_pred CCcCCc
Q 041782 511 IADIFP 516 (821)
Q Consensus 511 l~~~~~ 516 (821)
+.+..+
T Consensus 296 l~~~~~ 301 (362)
T 3goz_A 296 IHPSHS 301 (362)
T ss_dssp CCGGGC
T ss_pred CCCcch
Confidence 765533
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.1e-23 Score=220.66 Aligned_cols=213 Identities=17% Similarity=0.198 Sum_probs=171.5
Q ss_pred CCCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccC--CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCC
Q 041782 72 RDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHL--RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGN 149 (821)
Q Consensus 72 ~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~ 149 (821)
.-|.+|.++.|+. ..++.++++++.+.+. .+..+ ++++.|++++|.+.+ .+.. +..
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~--~~~~-------------~~~ 91 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQ--PLAE-------------HFS 91 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECS--CCCS-------------CCC
T ss_pred HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCccccc--cchh-------------hcc
Confidence 4677899999863 4588999999877632 56666 899999999998864 2222 667
Q ss_pred CCCCCEEEcCCCCCCCC-CCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCC-cCCC-CcchhhhcCC
Q 041782 150 LTKLKCLELSQNNFSSP-HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLN-QLTG-PIPNWLANLN 226 (821)
Q Consensus 150 l~~L~~L~Ls~n~~~~~-~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~-~~p~~~~~l~ 226 (821)
+++|++|++++|.+++. .+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ .++..+..++
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~---~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CBCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred CCCCCEEEccCCCcCHHHHH---HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 89999999999998765 55 56788999999999999988888888999999999999999 6775 3677788999
Q ss_pred CCCEEEccCC-cCCCC-CccccCCCC-CCCEEEccCc--cCC-CCCCccccCCCCcCeeccccCC-ceeecccccccCCC
Q 041782 227 RLTILSLKSN-QLRGY-LPSQIGSLT-QLTALDLSCN--QFQ-GPVPSSISELKRLEYLDLHSNN-LSGNVYIEELLPKL 299 (821)
Q Consensus 227 ~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l 299 (821)
+|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+.++++|++|++++|. +++..+ ..+..+
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~l 246 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--QEFFQL 246 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--GGGGGC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH--HHHhCC
Confidence 9999999999 88854 567788899 9999999999 455 3456677789999999999998 554333 247788
Q ss_pred CCCCeEECCCcc
Q 041782 300 KSLIVLFLSANN 311 (821)
Q Consensus 300 ~~L~~L~L~~n~ 311 (821)
++|++|++++|.
T Consensus 247 ~~L~~L~l~~~~ 258 (336)
T 2ast_B 247 NYLQHLSLSRCY 258 (336)
T ss_dssp TTCCEEECTTCT
T ss_pred CCCCEeeCCCCC
Confidence 999999998885
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.5e-22 Score=218.89 Aligned_cols=119 Identities=17% Similarity=0.172 Sum_probs=73.6
Q ss_pred CCcEEEcCCCcCcccCCccccCcccccCC-CcccEEeccCcccccc----CchhhcC-CCCCCEEeCCCCcCCcCCc---
Q 041782 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNA-TNLKMIDLSHNLLQGR----IPRSLAN-CTMLEFLDLGNNQIADIFP--- 516 (821)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~L~~n~l~~~~~--- 516 (821)
+|++|++++|++++..+..++. .+..+ ++|++|++++|.+++. ++..+.. .++|++|+|++|++++..+
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAK--FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHH--HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred cccEeeecCCCCchhhHHHHHH--HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 5666666666665544433221 12233 3666666666666642 3444544 3578888888888877654
Q ss_pred -hhhCCCCCCCEEEccCCcCccc-------CCCCCccCCCCCCcEEEccCCcCccCCChh
Q 041782 517 -SWLGTLPELKVLMLQFNRFHGE-------IGEPDTGFVFPKLRIIDLSHNRFSGKLPSK 568 (821)
Q Consensus 517 -~~l~~l~~L~~L~L~~N~l~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~ 568 (821)
..+..+++|++|++++|.+.+. ++..+ ..+++|+.||+++|++.+..+..
T Consensus 246 ~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCcCCCcchHH
Confidence 3345678888888888874322 11222 45788999999999998765544
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.3e-23 Score=226.54 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=58.1
Q ss_pred cccEEEccccccc----CccccccccCCCCCEEeCCCcccCcc----hhhhhcC--ccCCCeEeCCCCcccc----cCCC
Q 041782 636 FLTGIILSNNKLI----GKIPTSISELKGLNCLNLSGNNLLGH----IPSSLGN--LTVLESLDLSNNNLSG----EIPR 701 (821)
Q Consensus 636 ~L~~L~Ls~N~l~----~~~p~~l~~L~~L~~L~Ls~N~l~~~----ip~~l~~--l~~L~~L~Ls~N~l~~----~~p~ 701 (821)
.|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+.. +++|++|+|++|.+++ .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 3666666666664 45666666777777777777777655 4555533 6777777777777776 3666
Q ss_pred Cc-cccCCccEEEcccCcccccC
Q 041782 702 QL-AELTSLAVFDVSDNNLTGQI 723 (821)
Q Consensus 702 ~l-~~l~~L~~L~ls~N~l~g~i 723 (821)
.+ .++++|++|++++|++++..
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhcCCCceEEEccCCcCCcch
Confidence 55 45677777777777777654
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=206.83 Aligned_cols=234 Identities=17% Similarity=0.137 Sum_probs=154.4
Q ss_pred CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccc--cCCCCCCEEEccCCcCCCCcc----hhhhc
Q 041782 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWL--MNLTQLTYINFDLNQLTGPIP----NWLAN 224 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~~~~ 224 (821)
..++.|.+.++.++...-..+.....+++|++|++++|.+.+..|..+ .++++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 357777777776653211000112234568888888888888888777 788888888888888886544 34557
Q ss_pred CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCC--C--CccccCCCCcCeeccccCCceeecccc-cccCCC
Q 041782 225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGP--V--PSSISELKRLEYLDLHSNNLSGNVYIE-ELLPKL 299 (821)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~--p~~l~~l~~L~~L~L~~n~l~~~~~~~-~~l~~l 299 (821)
+++|++|++++|.+++..|..|.++++|++|++++|++.+. + +..+.++++|++|++++|+++...... ..+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 88888888888888877778888888888888888887642 1 223467888888888888886321110 124677
Q ss_pred CCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeE
Q 041782 300 KSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF 379 (821)
Q Consensus 300 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~ 379 (821)
++|++|++++|.+++..+..+. .+..+++|++|++++|+++ .+|..+. ++|++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~----------------------~~~~~~~L~~L~Ls~N~l~-~lp~~~~----~~L~~ 276 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAP----------------------RCMWSSALNSLNLSFAGLE-QVPKGLP----AKLRV 276 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCS----------------------SCCCCTTCCCEECCSSCCC-SCCSCCC----SCCSC
T ss_pred CCCCEEECCCCCCCccchhhHH----------------------hccCcCcCCEEECCCCCCC-chhhhhc----CCCCE
Confidence 8888888888888776433221 0112256666666666666 4454442 46677
Q ss_pred EEcCCCCCCCCCCCccccccCCccEEEeccCcccC
Q 041782 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQG 414 (821)
Q Consensus 380 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 414 (821)
|+|++|++++.+. ...+++|++|++++|+++.
T Consensus 277 L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCCch---hhhCCCccEEECcCCCCCC
Confidence 7777777766532 3455677777777777653
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.2e-20 Score=194.66 Aligned_cols=195 Identities=21% Similarity=0.302 Sum_probs=162.4
Q ss_pred hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520 (821)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 520 (821)
...+++|++|++++|.+... | .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-------~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-------GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIA 104 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-------TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGT
T ss_pred HHHcCCcCEEEeeCCCccCc-h-------hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhc
Confidence 45678899999999988753 3 24568999999999999986544 89999999999999999886 3688
Q ss_pred CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccC
Q 041782 521 TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILP 600 (821)
Q Consensus 521 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~ 600 (821)
.+++|++|++++|++.+. +. ...+++|++|++++|.+++ ++. +..
T Consensus 105 ~l~~L~~L~l~~n~l~~~-~~---l~~l~~L~~L~l~~n~l~~-~~~--l~~---------------------------- 149 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDV-TP---LAGLSNLQVLYLDLNQITN-ISP--LAG---------------------------- 149 (308)
T ss_dssp TCTTCCEEECTTSCCCCC-GG---GTTCTTCCEEECCSSCCCC-CGG--GGG----------------------------
T ss_pred CCCCCCEEECCCCCCCCc-hh---hcCCCCCCEEECCCCccCc-Ccc--ccC----------------------------
Confidence 999999999999999863 32 3678999999999999974 332 111
Q ss_pred CccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhc
Q 041782 601 SSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG 680 (821)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~ 680 (821)
++.|+.|++++|++++..+ +.++++|++|+|++|++++..+ +.
T Consensus 150 ---------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~ 192 (308)
T 1h6u_A 150 ---------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LA 192 (308)
T ss_dssp ---------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred ---------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hc
Confidence 3348899999999996444 8999999999999999996654 89
Q ss_pred CccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccc
Q 041782 681 NLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG 721 (821)
Q Consensus 681 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 721 (821)
.+++|++|+|++|++++..| +..+++|+.|++++|++++
T Consensus 193 ~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 99999999999999997654 8899999999999999986
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=2.3e-22 Score=219.74 Aligned_cols=95 Identities=22% Similarity=0.244 Sum_probs=52.1
Q ss_pred cCCccccCCCCCCEEEccCCcCCCCcc----hhhhcCCCCCEEEccCCc---CCCCCcccc-------CCCCCCCEEEcc
Q 041782 193 EFPSWLMNLTQLTYINFDLNQLTGPIP----NWLANLNRLTILSLKSNQ---LRGYLPSQI-------GSLTQLTALDLS 258 (821)
Q Consensus 193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n~---l~~~~p~~l-------~~l~~L~~L~Ls 258 (821)
.++..+..+++|++|+|++|.++...+ ..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344555566666666666666654432 234456666666666643 333444433 556666666666
Q ss_pred CccCCC----CCCccccCCCCcCeeccccCCce
Q 041782 259 CNQFQG----PVPSSISELKRLEYLDLHSNNLS 287 (821)
Q Consensus 259 ~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~ 287 (821)
+|.+.+ .+|..+.++++|++|++++|.++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 666654 23444455555555555555543
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=8.8e-21 Score=192.32 Aligned_cols=86 Identities=26% Similarity=0.300 Sum_probs=45.7
Q ss_pred CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcc-ccccCchhhcCCCCCCEEeCCC-CcCCcCCchhhCCCC
Q 041782 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL-LQGRIPRSLANCTMLEFLDLGN-NQIADIFPSWLGTLP 523 (821)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~ 523 (821)
+|++|++++|++++..+.. |.++++|++|++++|. +++..+..|..+++|++|++++ |++++..+..|..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~------~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHA------FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESCCCSEECTTT------TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCCcceEECHHH------ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 5556666665555443322 2335555555555554 5444444555555555555555 555555445555555
Q ss_pred CCCEEEccCCcCcc
Q 041782 524 ELKVLMLQFNRFHG 537 (821)
Q Consensus 524 ~L~~L~L~~N~l~~ 537 (821)
+|++|++++|++++
T Consensus 106 ~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM 119 (239)
T ss_dssp TCCEEEEEEECCCS
T ss_pred CCCEEeCCCCCCcc
Confidence 55555555555543
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.6e-20 Score=188.84 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=104.3
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcc-ccccCCccccCCCCCCEEEccC-CcCCCCcchhhhcCCCCC
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN-LIGEFPSWLMNLTQLTYINFDL-NQLTGPIPNWLANLNRLT 229 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~ 229 (821)
+|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS---HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEECT---TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCCcceEECH---HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 56666666666665554 344555555555555554 4333333555666666666665 566544445555666666
Q ss_pred EEEccCCcCCCCCccccCCCCCCC---EEEccCc-cCCCCCCccccCCCCcC-eeccccCCceeecccccccCCCCCCCe
Q 041782 230 ILSLKSNQLRGYLPSQIGSLTQLT---ALDLSCN-QFQGPVPSSISELKRLE-YLDLHSNNLSGNVYIEELLPKLKSLIV 304 (821)
Q Consensus 230 ~L~Ls~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~~~~~~l~~l~~L~~ 304 (821)
+|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|+++ .++. ..+.. ++|++
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~-~~~~~-~~L~~ 183 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG-YAFNG-TKLDA 183 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT-TTTTT-CEEEE
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH-hhcCC-CCCCE
Confidence 66666666554 443 55555555 6666666 55544444455555555 5555555554 2332 22222 44555
Q ss_pred EECCCcc-cceeccccchhccCCCeeEEecCCCCCchhhhhhcCC-CccceEecccCCCCCCCCcchhccCCCCeeEEEc
Q 041782 305 LFLSANN-LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ-DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNL 382 (821)
Q Consensus 305 L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~L 382 (821)
|++++|. ++.+++. .+..+ ++|+.|++++|++++..+. .+ ++|+.|++
T Consensus 184 L~L~~n~~l~~i~~~-------------------------~~~~l~~~L~~L~l~~N~l~~l~~~---~~--~~L~~L~l 233 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKD-------------------------AFGGVYSGPSLLDVSQTSVTALPSK---GL--EHLKELIA 233 (239)
T ss_dssp EECTTCTTCCEECTT-------------------------TTTTCSBCCSEEECTTCCCCCCCCT---TC--TTCSEEEC
T ss_pred EEcCCCCCcccCCHH-------------------------HhhccccCCcEEECCCCccccCChh---Hh--ccCceeec
Confidence 5555552 4433322 24445 5666666666666533222 22 55666666
Q ss_pred CCC
Q 041782 383 SYN 385 (821)
Q Consensus 383 s~n 385 (821)
+++
T Consensus 234 ~~~ 236 (239)
T 2xwt_C 234 RNT 236 (239)
T ss_dssp TTC
T ss_pred cCc
Confidence 554
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=3e-21 Score=206.81 Aligned_cols=204 Identities=16% Similarity=0.134 Sum_probs=99.9
Q ss_pred CCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCC-cchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 041782 178 TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGP-IPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256 (821)
Q Consensus 178 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 256 (821)
+++++|++++|.+.+..+. +.++++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4455555555554444333 33455555555555555433 445555555555555555555555555555555555555
Q ss_pred ccCc-cCCCC-CCccccCCCCcCeeccccC-CceeecccccccCCCC-CCCeEECCCcc--cceeccccchhccCCCeeE
Q 041782 257 LSCN-QFQGP-VPSSISELKRLEYLDLHSN-NLSGNVYIEELLPKLK-SLIVLFLSANN--LSLITRNTVNIRLQNKFVF 330 (821)
Q Consensus 257 Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~~~~~~l~~l~-~L~~L~L~~n~--l~~~~~~~~~~~~~~~L~~ 330 (821)
+++| .+++. ++..+.++++|++|++++| .+++.... ..+..++ +|++|++++|. ++.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~---------------- 211 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQK---------------- 211 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCH----------------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH-HHHHhcccCCCEEEeCCCcccCCH----------------
Confidence 5555 34431 3334455555555555555 54432111 2244455 55555555552 211
Q ss_pred EecCCCCCchhhhhhcCCCccceEecccCC-CCCCCCcchhccCCCCeeEEEcCCCC-CCCCCCCccccccCCccEEEec
Q 041782 331 LGLASCNLKEFLDFLNDQDQLELLDLSANK-IPGKIPGWLLNVTTGNLQFVNLSYNL-ITGFDRGSVVLLWTDLVTLDLR 408 (821)
Q Consensus 331 L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~ 408 (821)
..++..+..+++|++|++++|. +++..+..+..+ ++|++|++++|. ++.... ..+..+++|++|+++
T Consensus 212 --------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 212 --------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL--NYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVF 280 (336)
T ss_dssp --------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECT
T ss_pred --------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC--CCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEecc
Confidence 1233334445555555555555 444444444444 555555555553 111111 123445666666666
Q ss_pred cC
Q 041782 409 SN 410 (821)
Q Consensus 409 ~n 410 (821)
+|
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 66
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.9e-19 Score=189.59 Aligned_cols=195 Identities=24% Similarity=0.298 Sum_probs=110.1
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN 187 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~ 187 (821)
....+++|++|++++|.+.. +|.+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~----------------l~~~~~l~~L~~L~L~~n~i~~~~~-----~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT----------------IEGVQYLNNLIGLELKDNQITDLAP-----LKNLTKITELELSG 94 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC----------------CTTGGGCTTCCEEECCSSCCCCCGG-----GTTCCSCCEEECCS
T ss_pred cHHHcCCcCEEEeeCCCccC----------------chhhhccCCCCEEEccCCcCCCChh-----HccCCCCCEEEccC
Confidence 34567777777777776542 2335666777777777776665432 55666666666666
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782 188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267 (821)
Q Consensus 188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 267 (821)
|.+.+ + ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +
T Consensus 95 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~ 167 (308)
T 1h6u_A 95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-T 167 (308)
T ss_dssp CCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G
T ss_pred CcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-h
Confidence 66543 2 2456666666666666666542 2 25566666666666666654322 55566666666666665532 2
Q ss_pred ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND 347 (821)
Q Consensus 268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~ 347 (821)
. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 168 ~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~--------------------------~~-~l~~ 215 (308)
T 1h6u_A 168 P-LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISD--------------------------VS-PLAN 215 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCB--------------------------CG-GGTT
T ss_pred h-hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCc--------------------------cc-cccC
Confidence 2 5555556666666555543211 3444455555554444443 22 1455
Q ss_pred CCccceEecccCCCC
Q 041782 348 QDQLELLDLSANKIP 362 (821)
Q Consensus 348 l~~L~~L~Ls~n~l~ 362 (821)
+++|+.|++++|+++
T Consensus 216 l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 216 TSNLFIVTLTNQTIT 230 (308)
T ss_dssp CTTCCEEEEEEEEEE
T ss_pred CCCCCEEEccCCeee
Confidence 666666676666664
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.7e-19 Score=193.92 Aligned_cols=241 Identities=18% Similarity=0.147 Sum_probs=169.6
Q ss_pred EEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccE-Eec
Q 041782 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKM-IDL 482 (821)
Q Consensus 404 ~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~-L~L 482 (821)
+++.++++++..+...+.++++|++++|+++...+..|.++++|++|+|++|++.+.+|.. +|.+++++++ +.+
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-----~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-----SBCSCTTCCEEEEE
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-----Hhhcchhhhhhhcc
Confidence 3444444444322222344555555555555444457889999999999999988776643 3566777765 666
Q ss_pred cCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCC-cCcccCCCCCccCCCCCCcEEEccCCcC
Q 041782 483 SHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN-RFHGEIGEPDTGFVFPKLRIIDLSHNRF 561 (821)
Q Consensus 483 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 561 (821)
++|+++...|..|..+++|++|++++|+++...+..+....++..|++.++ .+. .++..........++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 778998777889999999999999999999887777777788889999764 454 444332222335688999999999
Q ss_pred ccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEE
Q 041782 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGII 641 (821)
Q Consensus 562 ~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 641 (821)
+ .+|...|. ...|+.|+
T Consensus 167 ~-~i~~~~f~--------------------------------------------------------------~~~L~~l~ 183 (350)
T 4ay9_X 167 Q-EIHNSAFN--------------------------------------------------------------GTQLDELN 183 (350)
T ss_dssp C-EECTTSST--------------------------------------------------------------TEEEEEEE
T ss_pred c-CCChhhcc--------------------------------------------------------------ccchhHHh
Confidence 7 56654321 11277889
Q ss_pred ccc-ccccCccc-cccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCc
Q 041782 642 LSN-NKLIGKIP-TSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNN 718 (821)
Q Consensus 642 Ls~-N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 718 (821)
+++ |.++ .+| +.|.++++|++|||++|+|+...+.. +.+|+.|.+.++.-...+| .+.++++|+.++++++.
T Consensus 184 l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 184 LSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 976 5555 555 56899999999999999999544433 5566666666665555777 48899999999998754
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.6e-19 Score=203.99 Aligned_cols=182 Identities=25% Similarity=0.394 Sum_probs=124.3
Q ss_pred CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCC
Q 041782 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525 (821)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 525 (821)
+|+.|++++|++++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TC
T ss_pred CccEEEeCCCCCCc-cCHhH--------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CC
Confidence 67778888877776 55433 256778888888777 555 446778888888887777 344 444 78
Q ss_pred CEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccc
Q 041782 526 KVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAY 605 (821)
Q Consensus 526 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 605 (821)
++|++++|++++ +|. .+++|+.|++++|.+++ +|..
T Consensus 123 ~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~~------------------------------------- 158 (571)
T 3cvr_A 123 KHLDVDNNQLTM-LPE-----LPALLEYINADNNQLTM-LPEL------------------------------------- 158 (571)
T ss_dssp CEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCCC-------------------------------------
T ss_pred CEEECCCCcCCC-CCC-----cCccccEEeCCCCccCc-CCCc-------------------------------------
Confidence 888888887775 444 36778888888887763 5420
Q ss_pred ccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCC
Q 041782 606 IFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVL 685 (821)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L 685 (821)
++.|+.|+|++|++++ +|. |. ++|++|+|++|+|+ .+|. |.. +|
T Consensus 159 ----------------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L 202 (571)
T 3cvr_A 159 ----------------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN 202 (571)
T ss_dssp ----------------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----
T ss_pred ----------------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh
Confidence 2236777777777775 665 55 77777777777777 5555 544 56
Q ss_pred -------CeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782 686 -------ESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725 (821)
Q Consensus 686 -------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 725 (821)
+.|+|++|+|+ .+|..+..+++|++|++++|++++.+|.
T Consensus 203 ~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 77777777777 4677677777777777777777776653
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.7e-19 Score=176.15 Aligned_cols=186 Identities=25% Similarity=0.263 Sum_probs=149.7
Q ss_pred CCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCC
Q 041782 73 DCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTK 152 (821)
Q Consensus 73 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~ 152 (821)
-.|.|.+|.|.... +. .++. ...++|++|++++|.+.. +|... +..+++
T Consensus 5 C~C~~~~v~c~~~~------------l~-~~p~----~~~~~l~~L~l~~n~l~~--~~~~~------------~~~l~~ 53 (208)
T 2o6s_A 5 CSCSGTTVECYSQG------------RT-SVPT----GIPAQTTYLDLETNSLKS--LPNGV------------FDELTS 53 (208)
T ss_dssp CEEETTEEECCSSC------------CS-SCCS----CCCTTCSEEECCSSCCCC--CCTTT------------TTTCTT
T ss_pred CEECCCEEEecCCC------------cc-CCCC----CCCCCCcEEEcCCCccCc--CChhh------------hccccc
Confidence 34899999997531 11 1222 224689999999999863 44432 688999
Q ss_pred CCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEE
Q 041782 153 LKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILS 232 (821)
Q Consensus 153 L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 232 (821)
|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 54 L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 54 LTQLYLGGNKLQSLPN---GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCccCccCh---hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 9999999999998776 5668899999999999999876667789999999999999999977777789999999999
Q ss_pred ccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCC
Q 041782 233 LKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKS 301 (821)
Q Consensus 233 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~ 301 (821)
+++|.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|+++|.+|. .++.++.
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~--~~~~l~~ 190 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN--SAGSVAP 190 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC--TTSSBCT
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec--cCccccC
Confidence 99999997777778999999999999997764 456899999999999987775 3555543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=9.9e-19 Score=173.02 Aligned_cols=130 Identities=25% Similarity=0.197 Sum_probs=74.3
Q ss_pred eeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEe
Q 041782 426 YLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505 (821)
Q Consensus 426 l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 505 (821)
+++++|.+++..+..+..+++|++|++++|++++..+.. |..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV------FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh------cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 333333333333444556666666666666666443322 33456666666666666655445566666666666
Q ss_pred CCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc
Q 041782 506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG 563 (821)
Q Consensus 506 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g 563 (821)
+++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|++.+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCeec
Confidence 66666666655556666666666666666664333223 345666666666665554
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=2.6e-19 Score=202.19 Aligned_cols=203 Identities=25% Similarity=0.354 Sum_probs=153.9
Q ss_pred ccCCCCCCCCCCCCc-----cccce-eeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccc
Q 041782 61 KFASWNLEEEDRDCC-----SWDGV-KCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEI 134 (821)
Q Consensus 61 ~l~~W~~~~~~~~~c-----~w~gv-~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~ 134 (821)
.+.+|.. +.++| .|.|+ .|.. ++++.|+|+++.+.+ +|. .+ +++|++|+|++|.++ .+| .
T Consensus 32 ~l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~--~ip-~- 97 (571)
T 3cvr_A 32 AWDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALI--SLP-E- 97 (571)
T ss_dssp HHHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCS--CCC-C-
T ss_pred HHHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCc--ccc-c-
Confidence 4567865 45677 79999 7863 579999999999987 654 44 489999999999986 355 2
Q ss_pred cccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcC
Q 041782 135 MNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL 214 (821)
Q Consensus 135 ~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l 214 (821)
.+++|++|+|++|.+++ +| . +.. +|++|++++|.+.+ +|. .+++|++|++++|.+
T Consensus 98 --------------~l~~L~~L~Ls~N~l~~-ip---~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 98 --------------LPASLEYLDACDNRLST-LP---E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQL 152 (571)
T ss_dssp --------------CCTTCCEEECCSSCCSC-CC---C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred --------------ccCCCCEEEccCCCCCC-cc---h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCcc
Confidence 36899999999999998 55 2 333 89999999999876 666 688999999999999
Q ss_pred CCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCc-------CeeccccCCce
Q 041782 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRL-------EYLDLHSNNLS 287 (821)
Q Consensus 215 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~L~~n~l~ 287 (821)
++ +|. .+++|++|++++|.+++ +|. |. ++|++|++++|.++ .+|. +.. +| +.|++++|.++
T Consensus 153 ~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 153 TM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred Cc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence 85 565 57889999999999986 666 65 88999999999988 6666 554 66 88888888777
Q ss_pred eecccccccCCCCCCCeEECCCcccceecc
Q 041782 288 GNVYIEELLPKLKSLIVLFLSANNLSLITR 317 (821)
Q Consensus 288 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 317 (821)
. +|. .+..+++|+.|++++|.+++..+
T Consensus 221 ~-lp~--~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 221 H-IPE--NILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C-CCG--GGGGSCTTEEEECCSSSCCHHHH
T ss_pred e-cCH--HHhcCCCCCEEEeeCCcCCCcCH
Confidence 3 343 24457777777777777765433
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=5.6e-18 Score=182.04 Aligned_cols=102 Identities=19% Similarity=0.113 Sum_probs=68.0
Q ss_pred CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccC-ccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCC
Q 041782 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH-NLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524 (821)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 524 (821)
.++.|++++|+++...+..+ ...+|++|++++ |.++...+..|..+++|++|++++|+|+.+.+.. +.+
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f-------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~ 224 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAF-------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LEN 224 (350)
T ss_dssp SCEEEECCSSCCCEECTTSS-------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTT
T ss_pred hhhhhccccccccCCChhhc-------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hcc
Confidence 46777888887775433322 245788888875 5555433456788888999999999888775543 455
Q ss_pred CCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCc
Q 041782 525 LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560 (821)
Q Consensus 525 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 560 (821)
|+.|.+.++.-...+|.. ..+++|+.++++++.
T Consensus 225 L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPTL---EKLVALMEASLTYPS 257 (350)
T ss_dssp CCEEECTTCTTCCCCCCT---TTCCSCCEEECSCHH
T ss_pred chHhhhccCCCcCcCCCc---hhCcChhhCcCCCCc
Confidence 666666555544456642 568899999987653
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.1e-18 Score=169.75 Aligned_cols=158 Identities=25% Similarity=0.288 Sum_probs=75.7
Q ss_pred CCCCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCC
Q 041782 71 DRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL 150 (821)
Q Consensus 71 ~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l 150 (821)
+...|+|.+|.|.... + +.+|. .+ .++|++|+|++|.+.+. .|.. +..+
T Consensus 15 ~~~~Cs~~~v~c~~~~--l-----------~~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~-------------~~~l 63 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKR--H-----------ASVPA--GI--PTNAQILYLHDNQITKL-EPGV-------------FDSL 63 (229)
T ss_dssp TTCEEETTEEECTTSC--C-----------SSCCS--CC--CTTCSEEECCSSCCCCC-CTTT-------------TTTC
T ss_pred CCCEEeCCEeEccCCC--c-----------CccCC--CC--CCCCCEEEcCCCccCcc-CHHH-------------hhCc
Confidence 5788999999996431 1 12222 11 15566666666665421 1222 4555
Q ss_pred CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 230 (821)
++|++|+|++|.++...+ ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++
T Consensus 64 ~~L~~L~L~~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPV---GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139 (229)
T ss_dssp TTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred cCCcEEECCCCCCCCcCh---hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence 566666666666554443 33344444444444444444333333444444444444444444 33444444444444
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263 (821)
Q Consensus 231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 263 (821)
|++++|++++..+..|..+++|++|++++|.+.
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 444444444333333444444444444444433
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.8e-18 Score=175.59 Aligned_cols=176 Identities=24% Similarity=0.332 Sum_probs=142.8
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN 187 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~ 187 (821)
.+..+++|++|++++|.+.. +|. +..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~--~~~--------------~~~l~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS--VQG--------------IQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDE 99 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CTT--------------GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred chhhcCcccEEEccCCCccc--Chh--------------HhcCCCCCEEEccCCccCCCcc-----cccCCCCCEEECCC
Confidence 45678889999999988753 332 6778899999999999887543 78889999999999
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782 188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267 (821)
Q Consensus 188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 267 (821)
|.+.+ +| .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 98865 33 488899999999999998853 4688899999999999998865 578889999999999999886544
Q ss_pred ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceec
Q 041782 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT 316 (821)
Q Consensus 268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 316 (821)
+..+++|++|++++|.+++. + .+..+++|+.|++++|.++..+
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l-~---~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDL-R---ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G---GGTTCTTCSEEEEEEEEEECCC
T ss_pred --hcCCCccCEEECCCCcCCCC-h---hhccCCCCCEEECcCCcccCCc
Confidence 88899999999999988752 2 2788899999999998877543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=166.12 Aligned_cols=138 Identities=21% Similarity=0.237 Sum_probs=103.8
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
.+++|+|++|.+++..+. ..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus 33 ~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 456777777777766431 235667777777777777766666677788888888888888887777778888888888
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecc
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVY 291 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 291 (821)
++++|++++..|..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+....+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 888888887777788888888888888888887777788888888888888887775444
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.5e-17 Score=165.77 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=86.9
Q ss_pred CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 230 (821)
++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..|.++++|++|+|++|.++...+..|..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~---~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP---GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEECT---TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcCH---hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 355566666666555544 34455556666666666665555666666777777777777776554455666777777
Q ss_pred EEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCce
Q 041782 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287 (821)
Q Consensus 231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 287 (821)
|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777777777666666777777777777777777665556666677777777776665
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=7.8e-18 Score=181.62 Aligned_cols=176 Identities=27% Similarity=0.220 Sum_probs=109.8
Q ss_pred cEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhc-CCCCCCEEeCCCCcCCcCCchhhCCCCCCC
Q 041782 448 RVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA-NCTMLEFLDLGNNQIADIFPSWLGTLPELK 526 (821)
Q Consensus 448 ~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 526 (821)
+.+++++++++. +|..+ .+.++.|+|++|.+++..+..+. .+++|++|+|++|+|+++.+..|..+++|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~--------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCcCc-cCccC--------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 577888877764 45443 24577788888887766666666 777788888888877777777777777777
Q ss_pred EEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccc
Q 041782 527 VLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI 606 (821)
Q Consensus 527 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 606 (821)
+|+|++|++.+..+..+ ..+++|++|+|++|++++..|. .|..
T Consensus 92 ~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~-~~~~---------------------------------- 134 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRN-AFED---------------------------------- 134 (361)
T ss_dssp EEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTT-TTTT----------------------------------
T ss_pred EEECCCCcCCcCCHHHh--CCCcCCCEEECCCCcccEECHH-HhCC----------------------------------
Confidence 77777777765544444 4566777777777776532221 1111
Q ss_pred cccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccccc---ccCCCCCEEeCCCcccCcchhhhhcCcc
Q 041782 607 FDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI---SELKGLNCLNLSGNNLLGHIPSSLGNLT 683 (821)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~~L~Ls~N~l~~~ip~~l~~l~ 683 (821)
++.|+.|+|++|++++..+..| ..+++|++|+|++|++++..+..|..++
T Consensus 135 ---------------------------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 135 ---------------------------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp ---------------------------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred ---------------------------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 2235666666666664333333 4466666666666666655555566555
Q ss_pred C--CCeEeCCCCccc
Q 041782 684 V--LESLDLSNNNLS 696 (821)
Q Consensus 684 ~--L~~L~Ls~N~l~ 696 (821)
. |+.|+|++|.+.
T Consensus 188 ~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 188 AWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHTTEECCSSCEE
T ss_pred HhhcceEEecCCCcc
Confidence 5 356666666655
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=5.7e-19 Score=207.21 Aligned_cols=240 Identities=18% Similarity=0.140 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccccceeeCCCCCCEEEEEcCCCCCcccccCCccc
Q 041782 30 LCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSL 109 (821)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l 109 (821)
+....++++|+++..+...... ..-..|... .+..+.|.++.+.. ++++.|+|.++.+... +. .
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~--~- 191 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKT--------AKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEA-NQ--A- 191 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHT--------TC------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccC--------cccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcc-hh--h-
Confidence 3556688999999987632211 133456442 45678899998864 6899999998887653 21 2
Q ss_pred ccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCC-CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782 110 FHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI 188 (821)
Q Consensus 110 ~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~-l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n 188 (821)
.|+.++|+.|.+....+... .+ ...|. +..+++|++|+|++|.+.. +| ..+..+++|++|+|++|
T Consensus 192 ----~l~~l~Ls~~~i~~~~~~~n-----~~-~~~~~~~~~l~~L~~L~Ls~n~l~~-l~---~~~~~l~~L~~L~Ls~N 257 (727)
T 4b8c_D 192 ----LLQHKKLSQYSIDEDDDIEN-----RM-VMPKDSKYDDQLWHALDLSNLQIFN-IS---ANIFKYDFLTRLYLNGN 257 (727)
T ss_dssp ----------------------------------------CCCCCCEEECTTSCCSC-CC---GGGGGCCSCSCCBCTTS
T ss_pred ----HhhcCccCcccccCcccccc-----ce-ecChhhhccCCCCcEEECCCCCCCC-CC---hhhcCCCCCCEEEeeCC
Confidence 34555555555432111000 00 00111 7788899999999999884 44 44557888999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc
Q 041782 189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS 268 (821)
Q Consensus 189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 268 (821)
.+. .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|.
T Consensus 258 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 258 SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred cCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 887 78888888999999999999888 77888888889999999998887 6787888888999999999988888777
Q ss_pred cccCCCC-cCeeccccCCceeecccccccCCCCCCCeEECCCc
Q 041782 269 SISELKR-LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN 310 (821)
Q Consensus 269 ~l~~l~~-L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n 310 (821)
.+..+.. +..+++++|.+++.+|. .|+.|+++.|
T Consensus 335 ~~~~~~~~~~~l~l~~N~l~~~~p~--------~l~~l~l~~n 369 (727)
T 4b8c_D 335 ILTEKSVTGLIFYLRDNRPEIPLPH--------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCCC--------C---------
T ss_pred HHhhcchhhhHHhhccCcccCcCcc--------ccceeEeecc
Confidence 7755432 23477888888764432 3455555554
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=162.97 Aligned_cols=154 Identities=16% Similarity=0.252 Sum_probs=113.9
Q ss_pred cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI 188 (821)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n 188 (821)
...+++|++|++++|.+. .+| . +..+++|++|++++|.++.. ..+..+++|++|++++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~--~l~-~-------------l~~l~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT--DLT-G-------------IEYAHNIKDLTINNIHATNY-----NPISGLSNLERLRIMGK 98 (197)
T ss_dssp HHHHHTCCEEEEESSCCS--CCT-T-------------GGGCTTCSEEEEESCCCSCC-----GGGTTCTTCCEEEEECT
T ss_pred hhhcCCccEEeccCCCcc--ChH-H-------------HhcCCCCCEEEccCCCCCcc-----hhhhcCCCCCEEEeECC
Confidence 466778888888888875 344 2 67788888888888866543 45677888888888888
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCc-CCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782 189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ-LRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267 (821)
Q Consensus 189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 267 (821)
.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++
T Consensus 99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~ 175 (197)
T 4ezg_A 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR 175 (197)
T ss_dssp TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT
T ss_pred ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH
Confidence 8877777778888888888888888877777778888888888888887 55 444 57777888888888887774 33
Q ss_pred ccccCCCCcCeeccccCCce
Q 041782 268 SSISELKRLEYLDLHSNNLS 287 (821)
Q Consensus 268 ~~l~~l~~L~~L~L~~n~l~ 287 (821)
.+..+++|++|++++|++.
T Consensus 176 -~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -TGGGCSSCCEEEECBC---
T ss_pred -HhccCCCCCEEEeeCcccC
Confidence 5677777777777777764
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.6e-17 Score=170.52 Aligned_cols=173 Identities=27% Similarity=0.344 Sum_probs=109.7
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN 226 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 226 (821)
+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++ ++ .+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred hhhcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCC
Confidence 34567777777777777654 235666777777777777655433 6677777777777777664 22 366677
Q ss_pred CCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEE
Q 041782 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLF 306 (821)
Q Consensus 227 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ 306 (821)
+|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~ 184 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLY 184 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEE
Confidence 777777777776643 3566667777777777766643 456666666666666666654221 45556666666
Q ss_pred CCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCC
Q 041782 307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPG 363 (821)
Q Consensus 307 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~ 363 (821)
+++|.++. ++. +..+++|+.|++++|++..
T Consensus 185 L~~N~i~~--------------------------l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 185 LSKNHISD--------------------------LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCB--------------------------CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCCCcCCC--------------------------Chh-hccCCCCCEEECcCCcccC
Confidence 66555543 322 5667777777777777654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.7e-17 Score=188.07 Aligned_cols=190 Identities=24% Similarity=0.324 Sum_probs=156.5
Q ss_pred EEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCC
Q 041782 91 KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170 (821)
Q Consensus 91 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~ 170 (821)
.+++....+.+.. .+..+++|+.|++++|.+.. +|. +..+++|++|+|++|.+++..+
T Consensus 25 ~l~l~~~~i~~~~----~~~~L~~L~~L~l~~n~i~~--l~~--------------l~~l~~L~~L~Ls~N~l~~~~~-- 82 (605)
T 1m9s_A 25 KDNLKKKSVTDAV----TQNELNSIDQIIANNSDIKS--VQG--------------IQYLPNVTKLFLNGNKLTDIKP-- 82 (605)
T ss_dssp HHHTTCSCTTSEE----CHHHHTTCCCCBCTTCCCCC--CTT--------------GGGCTTCCEEECTTSCCCCCGG--
T ss_pred HHhccCCCccccc----chhcCCCCCEEECcCCCCCC--ChH--------------HccCCCCCEEEeeCCCCCCChh--
Confidence 3344444444433 46788999999999998853 332 7889999999999999988644
Q ss_pred chhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCC
Q 041782 171 FSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT 250 (821)
Q Consensus 171 ~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 250 (821)
+..+++|++|+|++|.+.+ +| .+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..++
T Consensus 83 ---l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~ 153 (605)
T 1m9s_A 83 ---LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT 153 (605)
T ss_dssp ---GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred ---hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccC
Confidence 7889999999999999865 33 689999999999999999853 4688999999999999999965 6789999
Q ss_pred CCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceecc
Q 041782 251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITR 317 (821)
Q Consensus 251 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 317 (821)
+|++|+|++|.+.+..| +..+++|++|+|++|.+++. + .+..+++|+.|+|++|.+...+.
T Consensus 154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~---~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R---ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G---GGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h---HHccCCCCCEEEccCCcCcCCcc
Confidence 99999999999997655 88999999999999999863 2 38889999999999999876543
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=6.7e-17 Score=160.98 Aligned_cols=141 Identities=21% Similarity=0.179 Sum_probs=118.4
Q ss_pred cceeeccCCccCCCCc-hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCC
Q 041782 423 TIHYLVSNNLLTGKLA-PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501 (821)
Q Consensus 423 l~~l~l~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 501 (821)
++.+++++|.+++..+ ..+..+++|++|++++|++++..+.. |.++++|++|++++|.+++..+..|..+++|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA------FEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH------hCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 3344444444444433 45788999999999999999876654 4568999999999999998888889999999
Q ss_pred CEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhh
Q 041782 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQ 571 (821)
Q Consensus 502 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 571 (821)
++|+|++|++++..|..+..+++|++|+|++|++++..|..+ ..+++|+.|++++|++.+..+..++.
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~l~ 175 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAWLG 175 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHHHH
Confidence 999999999999999999999999999999999998777776 67999999999999999887765544
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.4e-17 Score=177.83 Aligned_cols=135 Identities=26% Similarity=0.265 Sum_probs=64.3
Q ss_pred CCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL 228 (821)
Q Consensus 149 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 228 (821)
.+++|++|+|++|+|++..+ ..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|..+++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISS---EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred cccccCEEECCCCcCCccCh---hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence 55555555555555555544 334445555555555555544444445555555555555555554444455555555
Q ss_pred CEEEccCCcCCCCCcccc---CCCCCCCEEEccCccCCCCCCccccCCCC--cCeeccccCCc
Q 041782 229 TILSLKSNQLRGYLPSQI---GSLTQLTALDLSCNQFQGPVPSSISELKR--LEYLDLHSNNL 286 (821)
Q Consensus 229 ~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l 286 (821)
++|+|++|++++..+..| ..+++|++|+|++|.+++..+..+..++. ++.|++++|.+
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 555555555553222222 33445555555555544333333333333 23444444443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=5.5e-17 Score=162.77 Aligned_cols=87 Identities=25% Similarity=0.230 Sum_probs=68.0
Q ss_pred ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD 716 (821)
Q Consensus 637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 716 (821)
|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 556666666666555556777888888888888888 6777788888888888888888877777788888888888888
Q ss_pred CcccccCC
Q 041782 717 NNLTGQIP 724 (821)
Q Consensus 717 N~l~g~iP 724 (821)
|++.+.++
T Consensus 169 N~~~c~c~ 176 (229)
T 3e6j_A 169 NPWDCECR 176 (229)
T ss_dssp SCBCTTBG
T ss_pred CCccCCcc
Confidence 88887765
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.8e-16 Score=157.91 Aligned_cols=142 Identities=19% Similarity=0.188 Sum_probs=117.6
Q ss_pred cccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCC
Q 041782 421 ESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500 (821)
Q Consensus 421 ~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 500 (821)
..++.+++++|.+++..+..+..+++|++|+|++|++++..|..+ .++++|++|+|++|.++...+..|..+++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~------~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF------QGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT------TTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh------hCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 344455555555555555678889999999999999998877654 55899999999999999766677899999
Q ss_pred CCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhh
Q 041782 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYF 570 (821)
Q Consensus 501 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 570 (821)
|++|+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|++.+.....++
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccHHH
Confidence 9999999999999999999999999999999999997666555 6689999999999999876654444
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=7.6e-17 Score=184.33 Aligned_cols=174 Identities=25% Similarity=0.301 Sum_probs=100.4
Q ss_pred hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520 (821)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 520 (821)
+..+++|+.|++++|.+... | .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++.+. ..+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTST
T ss_pred hhcCCCCCEEECcCCCCCCC-h-------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhc
Confidence 34556666777776666532 2 13446666677777666664433 66666666666666666653 2466
Q ss_pred CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccC
Q 041782 521 TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILP 600 (821)
Q Consensus 521 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~ 600 (821)
.+++|+.|+|++|.+.+. + . ...+++|+.|+|++|.+++. +. +..
T Consensus 107 ~l~~L~~L~Ls~N~l~~l-~-~--l~~l~~L~~L~Ls~N~l~~l-~~--l~~---------------------------- 151 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISDI-N-G--LVHLPQLESLYLGNNKITDI-TV--LSR---------------------------- 151 (605)
T ss_dssp TCTTCCEEECTTSCCCCC-G-G--GGGCTTCSEEECCSSCCCCC-GG--GGS----------------------------
T ss_pred cCCCCCEEEecCCCCCCC-c-c--ccCCCccCEEECCCCccCCc-hh--hcc----------------------------
Confidence 666666666666666532 1 1 24456666666666666531 10 100
Q ss_pred CccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhc
Q 041782 601 SSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG 680 (821)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~ 680 (821)
++.|+.|+|++|.+++..| +..+++|+.|+|++|++++. | .+.
T Consensus 152 ---------------------------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~ 194 (605)
T 1m9s_A 152 ---------------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALA 194 (605)
T ss_dssp ---------------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGT
T ss_pred ---------------------------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHc
Confidence 2235666666666665544 66666666666666666643 2 356
Q ss_pred CccCCCeEeCCCCccccc
Q 041782 681 NLTVLESLDLSNNNLSGE 698 (821)
Q Consensus 681 ~l~~L~~L~Ls~N~l~~~ 698 (821)
.+++|+.|+|++|++++.
T Consensus 195 ~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCTTCSEEECCSEEEECC
T ss_pred cCCCCCEEEccCCcCcCC
Confidence 666666666666666543
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.8e-17 Score=160.02 Aligned_cols=113 Identities=22% Similarity=0.334 Sum_probs=89.5
Q ss_pred ccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEc
Q 041782 635 NFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDV 714 (821)
Q Consensus 635 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 714 (821)
+.|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..|..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 34788889999998888889999999999999999999888888999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCCCCCCCCCccCCCCCCCCCC
Q 041782 715 SDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKP 747 (821)
Q Consensus 715 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~ 747 (821)
++|+++|.++.......+....+.++...|+.|
T Consensus 134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999999877643211111222344555556554
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=9.9e-17 Score=156.94 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=126.1
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN 226 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 226 (821)
.+.+++|++|++++|.++.. | .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..++.++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l-~----~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL-T----GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC-T----TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hhhcCCccEEeccCCCccCh-H----HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 35678899999999998843 2 3778889999999999653 335788899999999999999887888899999
Q ss_pred CCCEEEccCCcCCCCCccccCCCCCCCEEEccCcc-CCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeE
Q 041782 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ-FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL 305 (821)
Q Consensus 227 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L 305 (821)
+|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++. + .+..+++|++|
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~---~l~~l~~L~~L 186 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R---GIEDFPKLNQL 186 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T---TGGGCSSCCEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H---HhccCCCCCEE
Confidence 99999999999998788889999999999999998 55 455 688899999999999988752 2 37788889999
Q ss_pred ECCCcccce
Q 041782 306 FLSANNLSL 314 (821)
Q Consensus 306 ~L~~n~l~~ 314 (821)
++++|++..
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 998888753
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=9e-17 Score=164.76 Aligned_cols=170 Identities=24% Similarity=0.277 Sum_probs=122.1
Q ss_pred CCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcE
Q 041782 474 ATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRI 553 (821)
Q Consensus 474 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 553 (821)
+.++..+++++|.+++. + .+..+++|++|++++|.++.. + .+..+++|++|++++|++.+..+ + ..+++|++
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCE
Confidence 45566667777776633 2 466677777777777777654 3 56677777777777777765433 2 55777777
Q ss_pred EEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccc
Q 041782 554 IDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKV 633 (821)
Q Consensus 554 L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (821)
|++++|++++ +|...
T Consensus 90 L~L~~N~l~~-l~~~~---------------------------------------------------------------- 104 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGIP---------------------------------------------------------------- 104 (263)
T ss_dssp EECCSSCCSC-CTTCC----------------------------------------------------------------
T ss_pred EECCCCccCC-cCccc----------------------------------------------------------------
Confidence 7777777763 33100
Q ss_pred cccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEE
Q 041782 634 SNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFD 713 (821)
Q Consensus 634 ~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 713 (821)
.+.|+.|++++|++++. + .+.++++|++|+|++|++++. | .++.+++|++|+|++|++++. ..+..+++|+.|+
T Consensus 105 ~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 105 SACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWID 178 (263)
T ss_dssp CSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEE
T ss_pred cCcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEe
Confidence 02377888888888753 3 588888899999999998864 4 588889999999999999876 6688888999999
Q ss_pred cccCccccc
Q 041782 714 VSDNNLTGQ 722 (821)
Q Consensus 714 ls~N~l~g~ 722 (821)
+++|++++.
T Consensus 179 l~~N~~~~~ 187 (263)
T 1xeu_A 179 LTGQKCVNE 187 (263)
T ss_dssp EEEEEEECC
T ss_pred CCCCcccCC
Confidence 999998865
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=3.1e-18 Score=194.69 Aligned_cols=88 Identities=27% Similarity=0.387 Sum_probs=74.6
Q ss_pred cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccC-CCCccccCCccEEEc
Q 041782 636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEI-PRQLAELTSLAVFDV 714 (821)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l 714 (821)
.|+.|+|++|.++ .+|..|+++++|++|+|++|++++ +| .|+++++|++|+|++|++++.+ |..+..+++|++|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 4788888888888 778888888999999999998886 66 7888899999999999998876 888888899999999
Q ss_pred ccCcccccCCCC
Q 041782 715 SDNNLTGQIPQG 726 (821)
Q Consensus 715 s~N~l~g~iP~~ 726 (821)
++|++++.+|..
T Consensus 541 ~~N~l~~~~~~~ 552 (567)
T 1dce_A 541 QGNSLCQEEGIQ 552 (567)
T ss_dssp TTSGGGGSSSCT
T ss_pred cCCcCCCCccHH
Confidence 999988876643
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=7.4e-16 Score=157.95 Aligned_cols=149 Identities=25% Similarity=0.373 Sum_probs=69.9
Q ss_pred cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI 188 (821)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n 188 (821)
+..+++|++|++++|.+.. +| . +..+++|++|+|++|.+++..+ +..+++|++|++++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~--l~-~-------------l~~l~~L~~L~L~~N~i~~~~~-----l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS--LA-G-------------MQFFTNLKELHLSHNQISDLSP-----LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC--CT-T-------------GGGCTTCCEEECCSSCCCCCGG-----GTTCSSCCEEECCSS
T ss_pred hhhcCcCcEEECcCCCccc--ch-H-------------HhhCCCCCEEECCCCccCCChh-----hccCCCCCEEECCCC
Confidence 4555555555555555532 22 1 4455555555555555554322 444555555555555
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc
Q 041782 189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS 268 (821)
Q Consensus 189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 268 (821)
.+.+ +|. +.. ++|++|++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.+++. .
T Consensus 96 ~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 96 RLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp CCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred ccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 5433 222 111 4455555555554432 1344445555555555554432 2 344444455555555444433 3
Q ss_pred cccCCCCcCeeccccCCce
Q 041782 269 SISELKRLEYLDLHSNNLS 287 (821)
Q Consensus 269 ~l~~l~~L~~L~L~~n~l~ 287 (821)
.+..+++|++|++++|.+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCccc
Confidence 3444444444444444443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=5.7e-18 Score=192.48 Aligned_cols=199 Identities=21% Similarity=0.186 Sum_probs=151.1
Q ss_pred cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCC-------------CCCCCCCCchhcc
Q 041782 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN-------------FSSPHSASFSWIA 175 (821)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~-------------~~~~~~~~~~~l~ 175 (821)
+..+++|+.|+|++|.+. .+|+. ++++++|+.|++++|. +.+..| ..++
T Consensus 345 ~~~~~~L~~L~Ls~n~L~--~Lp~~-------------i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~---~~l~ 406 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST--VLQSE-------------LESCKELQELEPENKWCLLTIILLMRALDPLLYEK---ETLQ 406 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH--HHHHH-------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH---HHHH
T ss_pred cccCccceeccCChhhHH--hhHHH-------------HHHHHHHHHhccccchhhhhHHHHHHhcccccCCH---HHHH
Confidence 367899999999999985 58887 6777888888887664 555666 5667
Q ss_pred CCCCCCEEe-cCCccccccCCc------cccC--CCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCcccc
Q 041782 176 KQTELSWLA-LANINLIGEFPS------WLMN--LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI 246 (821)
Q Consensus 176 ~l~~L~~L~-L~~n~~~~~~p~------~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 246 (821)
.+++|+.|+ ++.|.+. .++. .+.. ...|++|+|++|.+++ +|. |+.+++|++|+|++|.++ .+|..+
T Consensus 407 ~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 407 YFSTLKAVDPMRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp HHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred HHHhcccCcchhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence 777777777 4544321 1110 0111 1258899999999985 666 889999999999999998 778899
Q ss_pred CCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeec-ccccccCCCCCCCeEECCCcccceeccccch-hcc
Q 041782 247 GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNV-YIEELLPKLKSLIVLFLSANNLSLITRNTVN-IRL 324 (821)
Q Consensus 247 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~ 324 (821)
+++++|++|+|++|.+++ +| .++++++|++|++++|++++.. | ..+..+++|+.|++++|.+++.++.... ...
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~ 558 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI--QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT--GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc--HHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence 999999999999999986 66 7889999999999999998653 3 4588899999999999999887764432 234
Q ss_pred CCCeeEEec
Q 041782 325 QNKFVFLGL 333 (821)
Q Consensus 325 ~~~L~~L~L 333 (821)
+++|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 788888764
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1.7e-16 Score=186.32 Aligned_cols=182 Identities=18% Similarity=0.126 Sum_probs=117.1
Q ss_pred CCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC
Q 041782 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF 515 (821)
Q Consensus 436 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 515 (821)
..+..+..++.|+.|+|++|.+. .+|..+. .+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF------KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGG------GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhc------CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence 45677888999999999999998 5565432 4799999999999999 88999999999999999999999 55
Q ss_pred chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCc
Q 041782 516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL 595 (821)
Q Consensus 516 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l 595 (821)
|..++.+++|++|+|++|.+. .+|..+ ..+++|++|+|++|++++.+|..+ ......
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~~------------------- 342 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKIL-TEKSVT------------------- 342 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHHH-HHHHHH-------------------
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHHH-hhcchh-------------------
Confidence 889999999999999999997 677765 779999999999999998877553 221100
Q ss_pred ccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCc------
Q 041782 596 NYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGN------ 669 (821)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N------ 669 (821)
...++|++|.+++.+|..+ +.|++++|
T Consensus 343 -----------------------------------------~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~ 375 (727)
T 4b8c_D 343 -----------------------------------------GLIFYLRDNRPEIPLPHER------RFIEINTDGEPQRE 375 (727)
T ss_dssp -----------------------------------------HHHHHHHHCCCCCCCCCC---------------------
T ss_pred -----------------------------------------hhHHhhccCcccCcCcccc------ceeEeecccccccc
Confidence 1236788888888877643 45566666
Q ss_pred --ccCcchhhhhcCccCCCeEeCCCCccc
Q 041782 670 --NLLGHIPSSLGNLTVLESLDLSNNNLS 696 (821)
Q Consensus 670 --~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 696 (821)
.+.+.++..+.++..++...+++|-+.
T Consensus 376 ~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 376 YDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------CCC
T ss_pred cCCccccccchhhcccccceeeeeccccc
Confidence 444444555566666777777777765
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3.1e-15 Score=145.40 Aligned_cols=111 Identities=23% Similarity=0.305 Sum_probs=59.7
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
+|++|++++|.+++..+. ..+..+++|++|++++|.+.+..|..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCS--CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCc--cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 566666666666655441 113445555555555555554445555555555555555555555444445555555555
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCC
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG 264 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 264 (821)
++++|++++..|..|..+++|++|++++|.+.+
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 555555555555555555555555555555543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.8e-15 Score=142.46 Aligned_cols=133 Identities=25% Similarity=0.268 Sum_probs=88.9
Q ss_pred CCCCCEEEcCCCCCC-CCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782 150 LTKLKCLELSQNNFS-SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL 228 (821)
Q Consensus 150 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 228 (821)
.++|++|++++|.++ +.+| ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS---SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHH---HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 356666666666665 4445 3345566666666666666544 556777777777777777776667777777777
Q ss_pred CEEEccCCcCCCCC-ccccCCCCCCCEEEccCccCCCCCC---ccccCCCCcCeeccccCCce
Q 041782 229 TILSLKSNQLRGYL-PSQIGSLTQLTALDLSCNQFQGPVP---SSISELKRLEYLDLHSNNLS 287 (821)
Q Consensus 229 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~ 287 (821)
++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777777777532 2567777777777777777775443 35667777777777777654
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.2e-15 Score=143.23 Aligned_cols=139 Identities=25% Similarity=0.194 Sum_probs=108.5
Q ss_pred cCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccc
Q 041782 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINL 190 (821)
Q Consensus 111 ~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 190 (821)
..++|++|++++|.+..+.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-------------~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-------------TAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRI 83 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-------------CGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCC
T ss_pred CcccCCEEECCCCCCChhhHHHH-------------HHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcC
Confidence 34678888888888763345554 57778888888888888765 3467788888888888888
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCc-chhhhcCCCCCEEEccCCcCCCCCc---cccCCCCCCCEEEccCccCCCCC
Q 041782 191 IGEFPSWLMNLTQLTYINFDLNQLTGPI-PNWLANLNRLTILSLKSNQLRGYLP---SQIGSLTQLTALDLSCNQFQGPV 266 (821)
Q Consensus 191 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~ 266 (821)
.+.+|..+.++++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+
T Consensus 84 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~ 162 (168)
T 2ell_A 84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EA 162 (168)
T ss_dssp CSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BC
T ss_pred chHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hc
Confidence 7777877778899999999999888542 2678889999999999999886554 47888999999999998877 44
Q ss_pred Cc
Q 041782 267 PS 268 (821)
Q Consensus 267 p~ 268 (821)
|+
T Consensus 163 ~~ 164 (168)
T 2ell_A 163 PD 164 (168)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.1e-15 Score=140.24 Aligned_cols=127 Identities=22% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCCCEEEcCCCCCC-CCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCC
Q 041782 151 TKLKCLELSQNNFS-SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLT 229 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 229 (821)
++|++|++++|.++ +.+| ..+..+++|++|++++|.+.+. ..+.++++|++|++++|.+++.+|..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC---SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHH---HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34444444444444 3333 2333444444444444444333 3455566666666666666655555555566666
Q ss_pred EEEccCCcCCCC-CccccCCCCCCCEEEccCccCCCCCC---ccccCCCCcCeeccc
Q 041782 230 ILSLKSNQLRGY-LPSQIGSLTQLTALDLSCNQFQGPVP---SSISELKRLEYLDLH 282 (821)
Q Consensus 230 ~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~ 282 (821)
+|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666666542 23555666666666666666654433 345555666666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.2e-15 Score=139.00 Aligned_cols=131 Identities=21% Similarity=0.169 Sum_probs=104.5
Q ss_pred cCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccc
Q 041782 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINL 190 (821)
Q Consensus 111 ~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~ 190 (821)
..++|++|++++|.+..+.+|.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-------------TDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-------------CTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCC
T ss_pred CCccCeEEEccCCcCChhHHHHH-------------HhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcc
Confidence 34678888888888763345554 67788888888888888765 3567788888888888888
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCC-cchhhhcCCCCCEEEccCCcCCCCCc---cccCCCCCCCEEEccC
Q 041782 191 IGEFPSWLMNLTQLTYINFDLNQLTGP-IPNWLANLNRLTILSLKSNQLRGYLP---SQIGSLTQLTALDLSC 259 (821)
Q Consensus 191 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~ 259 (821)
.+.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 77 ~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 877888788889999999999998863 34788889999999999999886655 4788889999998863
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=4.9e-15 Score=157.57 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=45.1
Q ss_pred hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCccc-EEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLK-MIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW 518 (821)
Q Consensus 440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 518 (821)
.|.++++|+++++.+| +....+ .+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++++|+++.+.+..
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQ------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred hhhCCCCCCEEECCcc-cceehH------HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhh
Confidence 4555566666666555 332211 2344556665 666655 444444455666666666666666666555555
Q ss_pred hCCCCCCCEEE
Q 041782 519 LGTLPELKVLM 529 (821)
Q Consensus 519 l~~l~~L~~L~ 529 (821)
|.++++|+.++
T Consensus 317 F~~~~~L~~ly 327 (329)
T 3sb4_A 317 FGNGVPSKLIY 327 (329)
T ss_dssp TCTTCCCCEEE
T ss_pred hcCCcchhhhc
Confidence 66666665554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.6e-14 Score=137.05 Aligned_cols=127 Identities=23% Similarity=0.268 Sum_probs=77.8
Q ss_pred CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782 154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL 233 (821)
Q Consensus 154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 233 (821)
+++++++|.++..+. .+ .++|++|++++|.+. .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~----~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK----GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCS----CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCC----CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 456666666554322 11 135566666666554 45556666666666666666666655566666666666666
Q ss_pred cCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCce
Q 041782 234 KSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287 (821)
Q Consensus 234 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 287 (821)
++|++++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666666665666666666666666666666544445666666666666666654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=7.9e-14 Score=133.66 Aligned_cols=110 Identities=28% Similarity=0.300 Sum_probs=57.8
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782 179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS 258 (821)
Q Consensus 179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 258 (821)
+|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333344555555555555555554444445555555555555555554444445555555555555
Q ss_pred CccCCCCCCccccCCCCcCeeccccCCcee
Q 041782 259 CNQFQGPVPSSISELKRLEYLDLHSNNLSG 288 (821)
Q Consensus 259 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 288 (821)
+|.+++..+..+..+++|++|++++|.+.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 555554433344555555555555555544
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.1e-13 Score=132.78 Aligned_cols=112 Identities=25% Similarity=0.255 Sum_probs=70.6
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
+|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 29 ~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 29 SATRLELESNKLQSLPH---GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEeCCCcccEeCH---HHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 44444444444444433 333444555555555555544444446677777777777777776666667777788888
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCCCCC
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPV 266 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 266 (821)
++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88888777655555677888888888888777543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=134.51 Aligned_cols=108 Identities=22% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231 (821)
Q Consensus 152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 231 (821)
+|++|+|++|.++ .+| ..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus 32 ~l~~L~L~~n~i~-~ip---~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVP---KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TCCEEECCSSCCC-SCC---GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCc-hhH---HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 4555555555554 233 344555555555555555555555567777777777777777776666677777778888
Q ss_pred EccCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263 (821)
Q Consensus 232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 263 (821)
+|++|.++...+..|..+++|++|++++|.+.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88887777655556777888888888888765
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=2.6e-14 Score=151.90 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=77.1
Q ss_pred cccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCC-eEeCCCCcccccCCCCccccCCccEE
Q 041782 634 SNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLE-SLDLSNNNLSGEIPRQLAELTSLAVF 712 (821)
Q Consensus 634 ~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 712 (821)
++.|+.++|++|+++...+..|.++.+|++|+|++| ++...+..|.++++|+ .+++.+ +++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 456999999999999666678999999999999998 8767778899999999 999999 8887888999999999999
Q ss_pred EcccCcccc
Q 041782 713 DVSDNNLTG 721 (821)
Q Consensus 713 ~ls~N~l~g 721 (821)
++++|+++.
T Consensus 303 ~l~~n~i~~ 311 (329)
T 3sb4_A 303 LATGDKITT 311 (329)
T ss_dssp EECSSCCCE
T ss_pred EeCCCccCc
Confidence 999999874
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=6.1e-14 Score=134.28 Aligned_cols=132 Identities=18% Similarity=0.156 Sum_probs=92.7
Q ss_pred CCCCCCCCEEEcCCCCCCCCCCCCchhccCC-CCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcC
Q 041782 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQ-TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANL 225 (821)
Q Consensus 147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l-~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 225 (821)
+.++.+|++|++++|.++.. + . +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~---~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-E---N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-C---C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCcCCceEEEeeCCCCchh-H---H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 45566677777777776643 3 1 3333 3677777777776553 467778888888888888875544555788
Q ss_pred CCCCEEEccCCcCCCCCcc--ccCCCCCCCEEEccCccCCCCCCcc----ccCCCCcCeeccccCCce
Q 041782 226 NRLTILSLKSNQLRGYLPS--QIGSLTQLTALDLSCNQFQGPVPSS----ISELKRLEYLDLHSNNLS 287 (821)
Q Consensus 226 ~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~ 287 (821)
++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++|+++.|...
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888888886 4554 6778888888888888887 44553 677788888888777665
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=1.8e-13 Score=129.86 Aligned_cols=90 Identities=22% Similarity=0.220 Sum_probs=84.1
Q ss_pred cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782 636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS 715 (821)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 715 (821)
.++.|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 48899999999999889999999999999999999998888889999999999999999998888889999999999999
Q ss_pred cCcccccCCC
Q 041782 716 DNNLTGQIPQ 725 (821)
Q Consensus 716 ~N~l~g~iP~ 725 (821)
+|++++.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999987763
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.3e-13 Score=130.26 Aligned_cols=133 Identities=20% Similarity=0.164 Sum_probs=106.6
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCC-CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecC
Q 041782 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT-KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALA 186 (821)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~ 186 (821)
.+..+++|++|++++|.+. .+|. +..+. +|++|++++|.+++. ..+..+++|++|+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~--~i~~--------------~~~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls 72 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP--VIEN--------------LGATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVN 72 (176)
T ss_dssp EEECTTSCEEEECTTSCCC--SCCC--------------GGGGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECC
T ss_pred hcCCcCCceEEEeeCCCCc--hhHH--------------hhhcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECC
Confidence 5677888999999999885 2443 34444 899999999998875 357788899999999
Q ss_pred CccccccCCccccCCCCCCEEEccCCcCCCCcch--hhhcCCCCCEEEccCCcCCCCCccc----cCCCCCCCEEEccCc
Q 041782 187 NINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPN--WLANLNRLTILSLKSNQLRGYLPSQ----IGSLTQLTALDLSCN 260 (821)
Q Consensus 187 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~Ls~n 260 (821)
+|.+.+..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++|++++|
T Consensus 73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 73 NNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 99987654455588999999999999996 5565 7889999999999999998 45654 888999999999988
Q ss_pred cCC
Q 041782 261 QFQ 263 (821)
Q Consensus 261 ~l~ 263 (821)
...
T Consensus 151 ~~~ 153 (176)
T 1a9n_A 151 KLK 153 (176)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=5.5e-15 Score=144.61 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=60.4
Q ss_pred cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchh-hhhcCccCCCeEeCCCCcccccCCCC----------cc
Q 041782 636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIP-SSLGNLTVLESLDLSNNNLSGEIPRQ----------LA 704 (821)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~ 704 (821)
.|+.|++++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|++++|++++.+|.. +.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 37778888888875 44 57778888888888888875433 46788888888888888888776654 77
Q ss_pred ccCCccEEEcccCccc
Q 041782 705 ELTSLAVFDVSDNNLT 720 (821)
Q Consensus 705 ~l~~L~~L~ls~N~l~ 720 (821)
.+++|++|| +|+++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 788888886 56555
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=6e-13 Score=126.73 Aligned_cols=89 Identities=24% Similarity=0.249 Sum_probs=82.3
Q ss_pred cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782 636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS 715 (821)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 715 (821)
.|+.|+|++|++++..|..|+++++|++|+|++|++++..+..|+.+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 48899999999999989999999999999999999998777778999999999999999998777779999999999999
Q ss_pred cCcccccCC
Q 041782 716 DNNLTGQIP 724 (821)
Q Consensus 716 ~N~l~g~iP 724 (821)
+|++.+..+
T Consensus 114 ~N~~~c~~~ 122 (174)
T 2r9u_A 114 NNPWDCECR 122 (174)
T ss_dssp SSCBCTTBG
T ss_pred CCCcccccc
Confidence 999997654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=2.4e-15 Score=147.23 Aligned_cols=151 Identities=22% Similarity=0.208 Sum_probs=79.6
Q ss_pred CCCCEEEcCCCCCCCCCCC--Cc-hhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCC
Q 041782 151 TKLKCLELSQNNFSSPHSA--SF-SWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNR 227 (821)
Q Consensus 151 ~~L~~L~Ls~n~~~~~~~~--~~-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 227 (821)
..++.++++.+.+++..|. .+ ..+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444330 00 144555556666666655544 44 5556666666666666665 45555555566
Q ss_pred CCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC-ccccCCCCcCeeccccCCceeeccc--------ccccCC
Q 041782 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRLEYLDLHSNNLSGNVYI--------EELLPK 298 (821)
Q Consensus 228 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~--------~~~l~~ 298 (821)
|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+. ...+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 6666666666654 23 45556666666666666653221 2455666666666666665543221 012455
Q ss_pred CCCCCeEE
Q 041782 299 LKSLIVLF 306 (821)
Q Consensus 299 l~~L~~L~ 306 (821)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 56666554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=4.6e-12 Score=120.12 Aligned_cols=86 Identities=31% Similarity=0.302 Sum_probs=40.1
Q ss_pred CCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeecc
Q 041782 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281 (821)
Q Consensus 202 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 281 (821)
++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444444444444444444444444444433334444445555555555444433334444444444444
Q ss_pred ccCCce
Q 041782 282 HSNNLS 287 (821)
Q Consensus 282 ~~n~l~ 287 (821)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 444443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=3.3e-11 Score=130.74 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=38.9
Q ss_pred ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCC-C
Q 041782 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF-P 549 (821)
Q Consensus 471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~ 549 (821)
|.+|++|+.+++.+ .++..-..+|.+|++|+.++|..+ ++.+...+|.++ +|+.+++.+|......+..+ ..+ .
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~~~~~ 370 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--YGFPD 370 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--CCSCT
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--cCCCC
Confidence 33444444444442 233333344555555555555332 444444455555 55555555554443222222 222 2
Q ss_pred CCcEEEccCCc
Q 041782 550 KLRIIDLSHNR 560 (821)
Q Consensus 550 ~L~~L~Ls~N~ 560 (821)
+++.|++..+.
T Consensus 371 ~l~~l~vp~~~ 381 (401)
T 4fdw_A 371 DITVIRVPAES 381 (401)
T ss_dssp TCCEEEECGGG
T ss_pred CccEEEeCHHH
Confidence 45566555544
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=6.9e-12 Score=119.33 Aligned_cols=104 Identities=24% Similarity=0.262 Sum_probs=46.1
Q ss_pred CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782 154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL 233 (821)
Q Consensus 154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 233 (821)
+.+++++|.++..+. .+ .++|++|++++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~----~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA----GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCS----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCccCC----Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 566666666543221 11 144444444444444444444444444444444444444333333344444444444
Q ss_pred cCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782 234 KSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263 (821)
Q Consensus 234 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 263 (821)
++|++++..+..|..+++|++|++++|.+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 444444333333444444444444444443
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.30 E-value=1.3e-10 Score=126.69 Aligned_cols=60 Identities=25% Similarity=0.248 Sum_probs=29.8
Q ss_pred ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccC
Q 041782 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQF 532 (821)
Q Consensus 471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 532 (821)
|.++++|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++.+...+|.++++|+.+++..
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 444555555555432 33233345555555555555444 4444444555555555555543
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.28 E-value=7.3e-11 Score=128.02 Aligned_cols=109 Identities=14% Similarity=0.180 Sum_probs=52.0
Q ss_pred hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519 (821)
Q Consensus 440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l 519 (821)
.|.+|++|+.+++.+|+++.....+ |. +.+|+.+.+.++ ++.....+|.+|++|+.+++..+ ++.+...+|
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~a------F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF 245 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPAST------FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF 245 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTT------TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT
T ss_pred HhhCcccCCeeecCCCcceEechhh------Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc
Confidence 4555556666666555555332222 22 345555555533 44344445555556666655543 444444445
Q ss_pred CCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcC
Q 041782 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561 (821)
Q Consensus 520 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 561 (821)
.+ .+|+.+.+. +.+...-...+ ..+++|+.+++.+|.+
T Consensus 246 ~~-~~L~~i~lp-~~i~~I~~~aF--~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 246 RE-SGITTVKLP-NGVTNIASRAF--YYCPELAEVTTYGSTF 283 (401)
T ss_dssp TT-CCCSEEEEE-TTCCEECTTTT--TTCTTCCEEEEESSCC
T ss_pred cc-CCccEEEeC-CCccEEChhHh--hCCCCCCEEEeCCccc
Confidence 44 455555552 22332222222 3455555555555443
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=2.1e-10 Score=124.93 Aligned_cols=312 Identities=14% Similarity=0.093 Sum_probs=169.0
Q ss_pred hhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCC
Q 041782 172 SWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQ 251 (821)
Q Consensus 172 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 251 (821)
..|.++++|+.+.+..+ +...-..+|.++++|+.+++..+ ++......|.++.+|+.+.+..+ +......+|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 34456666776666532 33223345666677777766544 44334455666666666555433 23233344544443
Q ss_pred CCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEE
Q 041782 252 LTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFL 331 (821)
Q Consensus 252 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 331 (821)
++....... ......+|.++++|+.+.+.++... +.. ..|..+.+|+.+.+..+ ++.+...
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~--I~~-~~F~~c~~L~~i~l~~~-~~~I~~~------------- 202 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET--LHN-GLFSGCGKLKSIKLPRN-LKIIRDY------------- 202 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE--ECT-TTTTTCTTCCBCCCCTT-CCEECTT-------------
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCccce--ecc-ccccCCCCceEEEcCCC-ceEeCch-------------
Confidence 322222221 1122345666666666666544321 222 34556666666665543 3333222
Q ss_pred ecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCc
Q 041782 332 GLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNK 411 (821)
Q Consensus 332 ~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 411 (821)
.+..+..|+.+.+..+... +....... ..|+.+.+... ++.+... .+..+..++.+.+..+.
T Consensus 203 ------------~F~~~~~L~~i~~~~~~~~--i~~~~~~~--~~l~~i~ip~~-~~~i~~~-~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 203 ------------CFAECILLENMEFPNSLYY--LGDFALSK--TGVKNIIIPDS-FTELGKS-VFYGCTDLESISIQNNK 264 (394)
T ss_dssp ------------TTTTCTTCCBCCCCTTCCE--ECTTTTTT--CCCCEEEECTT-CCEECSS-TTTTCSSCCEEEECCTT
T ss_pred ------------hhccccccceeecCCCceE--eehhhccc--CCCceEEECCC-ceecccc-cccccccceeEEcCCCc
Confidence 2444555555555443221 11111112 45555555432 1212111 23445566666665442
Q ss_pred ccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccC
Q 041782 412 LQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI 491 (821)
Q Consensus 412 l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~ 491 (821)
.. .....+..+..++.+....+.+. . ..|.++.+|+.+.+.++ ++..-
T Consensus 265 ~~----------------------i~~~~F~~~~~l~~~~~~~~~i~----~-----~~F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 265 LR----------------------IGGSLFYNCSGLKKVIYGSVIVP----E-----KTFYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp CE----------------------ECSCTTTTCTTCCEEEECSSEEC----T-----TTTTTCTTCCEEEECTT-CCEEC
T ss_pred ce----------------------eeccccccccccceeccCceeec----c-----ccccccccccccccccc-cceec
Confidence 21 12334666777887777654322 1 24667888998888765 55455
Q ss_pred chhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCC
Q 041782 492 PRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559 (821)
Q Consensus 492 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 559 (821)
..+|.+|.+|+.++|..+ ++.+...+|.++.+|+.+++..+ +...-...+ ..+++|+.+++..+
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF--~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF--QGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB--TTCTTCCEEEEEGG
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh--hCCCCCCEEEECCC
Confidence 677889999999999754 77777788889999999998766 443323333 66888988888654
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=3.6e-13 Score=144.78 Aligned_cols=113 Identities=21% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCCCEEEccCCcCCCCcchhhh-----cCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCccCCCC----CCc
Q 041782 202 TQLTYINFDLNQLTGPIPNWLA-----NLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCNQFQGP----VPS 268 (821)
Q Consensus 202 ~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~ 268 (821)
++|++|+|++|.++......+. ..++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 3444555555544432222221 234455555555554421 222334445555555555554421 122
Q ss_pred cccCCCCcCeeccccCCceeec--ccccccCCCCCCCeEECCCcccce
Q 041782 269 SISELKRLEYLDLHSNNLSGNV--YIEELLPKLKSLIVLFLSANNLSL 314 (821)
Q Consensus 269 ~l~~l~~L~~L~L~~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~ 314 (821)
.+...++|++|+|++|.+++.. .....+...++|++|+|++|.++.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3344445555555555544211 111223344555555555555543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=4.4e-13 Score=144.06 Aligned_cols=148 Identities=20% Similarity=0.151 Sum_probs=79.8
Q ss_pred CCCCEEEccCCcCCCCcchhh-hcCCCCCEEEccCCcCCCCCcccc-----CCCCCCCEEEccCccCCCC----CCcccc
Q 041782 202 TQLTYINFDLNQLTGPIPNWL-ANLNRLTILSLKSNQLRGYLPSQI-----GSLTQLTALDLSCNQFQGP----VPSSIS 271 (821)
Q Consensus 202 ~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~l~ 271 (821)
++|++|+|++|.++......+ ..+++|++|+|++|.++......+ ...++|++|+|++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 566777777776654322222 234567777777777764433333 2356677777777766532 223334
Q ss_pred CCCCcCeeccccCCceeec--ccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCC
Q 041782 272 ELKRLEYLDLHSNNLSGNV--YIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQD 349 (821)
Q Consensus 272 ~l~~L~~L~L~~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~ 349 (821)
.+++|++|+|++|.+.+.. .....+...++|++|+|++|.++..... .+...+...+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~---------------------~l~~~L~~~~ 239 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL---------------------ALARAAREHP 239 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH---------------------HHHHHHHHCS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH---------------------HHHHHHHhCC
Confidence 5666666666666655311 1112344455555555555555432211 2334455566
Q ss_pred ccceEecccCCCCCCCCcchh
Q 041782 350 QLELLDLSANKIPGKIPGWLL 370 (821)
Q Consensus 350 ~L~~L~Ls~n~l~~~~p~~l~ 370 (821)
+|++|+|++|.+++.....+.
T Consensus 240 ~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 240 SLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp SCCEEECTTSSCCHHHHHHHH
T ss_pred CCCEEeccCCCCCHHHHHHHH
Confidence 777777777776654443333
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=5e-11 Score=127.67 Aligned_cols=85 Identities=24% Similarity=0.188 Sum_probs=43.4
Q ss_pred cccEEEccc-ccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEc
Q 041782 636 FLTGIILSN-NKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDV 714 (821)
Q Consensus 636 ~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 714 (821)
.|+.|+|++ |++++..|..|++|++|++|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..|..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 355555553 555544444555555555555555555555555555555555555555555544444444333 555555
Q ss_pred ccCcccc
Q 041782 715 SDNNLTG 721 (821)
Q Consensus 715 s~N~l~g 721 (821)
++|++.+
T Consensus 111 ~~N~~~c 117 (347)
T 2ifg_A 111 SGNPLHC 117 (347)
T ss_dssp CSSCCCC
T ss_pred eCCCccC
Confidence 5555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=2.9e-10 Score=121.61 Aligned_cols=92 Identities=24% Similarity=0.226 Sum_probs=47.2
Q ss_pred CCccccCCCCCCEEEccC-CcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccC
Q 041782 194 FPSWLMNLTQLTYINFDL-NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE 272 (821)
Q Consensus 194 ~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 272 (821)
+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 444 55555555555553 5555444455555555555555555555555555555555555555555555433333333
Q ss_pred CCCcCeeccccCCce
Q 041782 273 LKRLEYLDLHSNNLS 287 (821)
Q Consensus 273 l~~L~~L~L~~n~l~ 287 (821)
++ |+.|++.+|.+.
T Consensus 103 ~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LS-LQELVLSGNPLH 116 (347)
T ss_dssp CC-CCEEECCSSCCC
T ss_pred CC-ceEEEeeCCCcc
Confidence 33 555555555443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.2e-08 Score=111.13 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=53.6
Q ss_pred hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519 (821)
Q Consensus 440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l 519 (821)
.|.++++|+.+.+.. .+... + ..+|.+|.+|+.+++..+ ++..-..+|.+|.+|+.+.|..+ ++.+...+|
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I-~-----~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITEL-P-----ESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEE-C-----TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred ccccccccccccCCC-ccccc-C-----ceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 455566666666642 23222 1 124556666777666543 44344456666677777766543 555555666
Q ss_pred CCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCc
Q 041782 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560 (821)
Q Consensus 520 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 560 (821)
.++++|+.+++.++.... ..+ ..+.+|+.+.+..|.
T Consensus 354 ~~C~~L~~i~~~~~~~~~---~~~--~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW---NAI--STDSGLQNLPVAPGS 389 (394)
T ss_dssp TTCTTCCEEEESSCHHHH---HTC--BCCCCC---------
T ss_pred hCCCCCCEEEECCceeeh---hhh--hccCCCCEEEeCCCC
Confidence 667777777666654331 111 335556666555444
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=9e-08 Score=104.03 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=55.6
Q ss_pred hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW 518 (821)
Q Consensus 439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 518 (821)
..|.++.+|+.++|..+ ++.. ...+|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++.... ..
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I------~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~ 373 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQI------LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NA 373 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEE------CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HT
T ss_pred eeecCCCCcCEEEeCCc-ccEe------hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hh
Confidence 46778889999988754 3322 2236788999999999755 555556789999999999999876432 45
Q ss_pred hCCCCCCCEEEccCCcC
Q 041782 519 LGTLPELKVLMLQFNRF 535 (821)
Q Consensus 519 l~~l~~L~~L~L~~N~l 535 (821)
+..+.+|+.+.+..+.+
T Consensus 374 ~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 374 ISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CBCCCCC----------
T ss_pred hhccCCCCEEEeCCCCE
Confidence 66778888888876654
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.77 E-value=1.6e-10 Score=116.36 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=51.1
Q ss_pred cCCCCCCEEEccCCcCCC--CcchhhhcCCCCCEEEccCCcCCCCCccccCCCC--CCCEEEccCccCCCCCCc------
Q 041782 199 MNLTQLTYINFDLNQLTG--PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT--QLTALDLSCNQFQGPVPS------ 268 (821)
Q Consensus 199 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~------ 268 (821)
.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++. ..+..++ +|++|+|++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777776 3456666777777777777777754 2333333 777777777777655442
Q ss_pred -cccCCCCcCeec
Q 041782 269 -SISELKRLEYLD 280 (821)
Q Consensus 269 -~l~~l~~L~~L~ 280 (821)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 234555555554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=9.5e-09 Score=109.23 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=44.9
Q ss_pred cccEEEcccccccCccccccc---cCCCCCEEeCCCcccCcc----hhhhhcCccCCCeEeCCCCcccccCCCCccc-cC
Q 041782 636 FLTGIILSNNKLIGKIPTSIS---ELKGLNCLNLSGNNLLGH----IPSSLGNLTVLESLDLSNNNLSGEIPRQLAE-LT 707 (821)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~---~L~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~ 707 (821)
.|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. +
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al- 331 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL- 331 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence 356666666655543332222 356677777777776653 3333455677777777777766443333332 1
Q ss_pred CccEEEcccCc
Q 041782 708 SLAVFDVSDNN 718 (821)
Q Consensus 708 ~L~~L~ls~N~ 718 (821)
...+++++++
T Consensus 332 -g~~~~~~~~~ 341 (362)
T 2ra8_A 332 -PMKIDVSDSQ 341 (362)
T ss_dssp -CSEEECCSBC
T ss_pred -CCEEEecCCc
Confidence 2456676665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=3.3e-09 Score=112.78 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=38.3
Q ss_pred hhhCCCCCcEEEcCCCcCcccCCcccc--C-cccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCc
Q 041782 440 WLCNLNSLRVLDLSHNFLSGVLPQCLS--N-SKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP 516 (821)
Q Consensus 440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 516 (821)
....+++|+.|.+..+.....--.++. . ...+..+++|+.|++++|.-. .++. +. +++|++|+|..|.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence 345567777777755432110000000 0 012233455666666555211 1221 22 4555666655555543322
Q ss_pred hhhC--CCCCCCEEEcc
Q 041782 517 SWLG--TLPELKVLMLQ 531 (821)
Q Consensus 517 ~~l~--~l~~L~~L~L~ 531 (821)
..+. .+|+|+.|+|+
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 2222 45555555553
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.63 E-value=2.9e-06 Score=91.52 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=62.8
Q ss_pred hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW 518 (821)
Q Consensus 439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 518 (821)
..+.++.+|+.+.+..+ +... + ..+|.++++|+.+.+.++.++..-..+|.+|.+|+.++|..+ ++.+...+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i-~-----~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 328 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTV-P-----YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA 328 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEE-C-----TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred cccceeehhcccccccc-ceec-c-----ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence 34666777888877543 3322 1 235677888888888888777666678888888888888754 66666778
Q ss_pred hCCCCCCCEEEccCC
Q 041782 519 LGTLPELKVLMLQFN 533 (821)
Q Consensus 519 l~~l~~L~~L~L~~N 533 (821)
|.++++|+.+.+..+
T Consensus 329 F~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 329 FKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCCCCCCTT
T ss_pred hhCCCCCCEEEECCc
Confidence 888888888888654
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=9.4e-06 Score=87.51 Aligned_cols=122 Identities=15% Similarity=0.154 Sum_probs=81.0
Q ss_pred hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW 518 (821)
Q Consensus 439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 518 (821)
..+.++..|+.+.+..+ ++.. ...+|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+....
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I------~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSI------GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEE------CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred ccccCCccceEEEcCCC-ccEe------Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhh
Confidence 45667778888887654 3322 1234667788888888654 44344567888888888888888888777788
Q ss_pred hCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhcc
Q 041782 519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW 573 (821)
Q Consensus 519 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l 573 (821)
|.++.+|+.+.|..+ ++..-...+ ..+++|+.+.+..+ ++ .|....|.++
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF--~~C~~L~~i~ip~~-v~-~I~~~aF~~c 355 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAF--KNCKALSTISYPKS-IT-LIESGAFEGS 355 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTT--TTCTTCCCCCCCTT-CC-EECTTTTTTS
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHh--hCCCCCCEEEECCc-cC-EEchhHhhCC
Confidence 888888888888654 432222333 56788888877654 33 4555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=6.7e-08 Score=92.55 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=30.5
Q ss_pred ccCCCCCCEEEccCCcCCCC----cchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEc--cCccCC
Q 041782 198 LMNLTQLTYINFDLNQLTGP----IPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDL--SCNQFQ 263 (821)
Q Consensus 198 l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--s~n~l~ 263 (821)
+...++|++|+|++|.+... +...+...++|++|+|++|.++.. +...+...++|++|+| ++|.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 34445555555555555431 223333444555555555555432 2233444445555555 444444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=8.5e-08 Score=91.84 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=81.0
Q ss_pred CccccCCCCCCEEEccCC-cCCCC----cchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCccCCCC
Q 041782 195 PSWLMNLTQLTYINFDLN-QLTGP----IPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCNQFQGP 265 (821)
Q Consensus 195 p~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~ 265 (821)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667888888888888 77642 345566678899999999988743 234455667888888888888753
Q ss_pred ----CCccccCCCCcCeecc--ccCCceeec--ccccccCCCCCCCeEECCCcccc
Q 041782 266 ----VPSSISELKRLEYLDL--HSNNLSGNV--YIEELLPKLKSLIVLFLSANNLS 313 (821)
Q Consensus 266 ----~p~~l~~l~~L~~L~L--~~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~ 313 (821)
+...+...+.|++|++ ++|.+.... .....+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445666677888888 777776321 11233555677777777777664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=3.2e-07 Score=92.20 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=63.8
Q ss_pred EEccccccc---CccccccccCCCCCEEeCCCcccCc--chhhhhcCccCCCeEeCCCCcccccCCCCccccC--CccEE
Q 041782 640 IILSNNKLI---GKIPTSISELKGLNCLNLSGNNLLG--HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT--SLAVF 712 (821)
Q Consensus 640 L~Ls~N~l~---~~~p~~l~~L~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 712 (821)
++++.|... +.++....++++|++|+|++|++++ .+|..++.+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777433 2223333568899999999999997 5667788899999999999999875 3455555 89999
Q ss_pred EcccCcccccCCC
Q 041782 713 DVSDNNLTGQIPQ 725 (821)
Q Consensus 713 ~ls~N~l~g~iP~ 725 (821)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987763
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=2.6e-06 Score=79.21 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=34.6
Q ss_pred CCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCc-CCCCCccccCCC----CCCCEEEccCcc-CCCCCCccccCCCCc
Q 041782 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ-LRGYLPSQIGSL----TQLTALDLSCNQ-FQGPVPSSISELKRL 276 (821)
Q Consensus 203 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 276 (821)
.|++||+++|.++...-..+..+++|++|+|++|. +++.--..++.+ ++|++|+|++|. +++..-..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555554444333334444555555555542 333222223332 234555554442 333222233444444
Q ss_pred CeeccccC
Q 041782 277 EYLDLHSN 284 (821)
Q Consensus 277 ~~L~L~~n 284 (821)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=4.1e-06 Score=77.87 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=70.0
Q ss_pred cccEEEcccccccCccccccccCCCCCEEeCCCcc-cCcchhhhhcCc----cCCCeEeCCCCc-ccccCCCCccccCCc
Q 041782 636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNN-LLGHIPSSLGNL----TVLESLDLSNNN-LSGEIPRQLAELTSL 709 (821)
Q Consensus 636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~~ip~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 709 (821)
.|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 48999999999987766778899999999999995 887666667765 479999999985 876555567889999
Q ss_pred cEEEcccCc
Q 041782 710 AVFDVSDNN 718 (821)
Q Consensus 710 ~~L~ls~N~ 718 (821)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00026 Score=67.08 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=31.3
Q ss_pred cccCCCCCCEEEccCCcCCCC----cchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCc
Q 041782 197 WLMNLTQLTYINFDLNQLTGP----IPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCN 260 (821)
Q Consensus 197 ~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n 260 (821)
.+..-+.|++|+|++|.+... +.+.+..-+.|++|+|++|.|... +.+++..-+.|++|+|++|
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344445556666666655432 223333445566666666655532 1223334445555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.72 E-value=0.00036 Score=66.07 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=65.0
Q ss_pred ccCCCCCCEEEccCC-cCCC----CcchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCccCCCCC--
Q 041782 198 LMNLTQLTYINFDLN-QLTG----PIPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCNQFQGPV-- 266 (821)
Q Consensus 198 l~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~-- 266 (821)
+.+-+.|++|+|++| .|.. .+.+.+..-+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445667777787775 6643 2344556667788888888887743 2333445677888888888776432
Q ss_pred --CccccCCCCcCeeccccCC---ceee--cccccccCCCCCCCeEECCCcc
Q 041782 267 --PSSISELKRLEYLDLHSNN---LSGN--VYIEELLPKLKSLIVLFLSANN 311 (821)
Q Consensus 267 --p~~l~~l~~L~~L~L~~n~---l~~~--~~~~~~l~~l~~L~~L~L~~n~ 311 (821)
-+.+..-+.|++|+|++|. +... ....+.+..-+.|+.|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1233444557777776542 2211 1111234445566666665544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0016 Score=57.47 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=22.2
Q ss_pred CCCeEeCCCCcccccCCCCccccCCccEEEcccCcccc
Q 041782 684 VLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG 721 (821)
Q Consensus 684 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 721 (821)
+|++|+|++|+|+...+..|..+++|++|+|++|++.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 45555666666555555555666666666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.59 E-value=0.0029 Score=55.88 Aligned_cols=58 Identities=28% Similarity=0.307 Sum_probs=48.1
Q ss_pred cEEEccccccc-CccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccc
Q 041782 638 TGIILSNNKLI-GKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG 697 (821)
Q Consensus 638 ~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 697 (821)
..++.+++.++ ..+|..+. .+|++|+|++|+|+...++.|..+++|++|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 46888999886 46776543 479999999999998777889999999999999998863
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.43 E-value=36 Score=27.61 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=20.3
Q ss_pred hhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccC
Q 041782 493 RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQF 532 (821)
Q Consensus 493 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 532 (821)
.+|.+|.+|+.+.|-.+ ++.+....|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44555555555555442 3344444555566666655544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.70 E-value=61 Score=26.20 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=14.1
Q ss_pred hhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEc
Q 041782 221 WLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL 257 (821)
Q Consensus 221 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 257 (821)
.|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 3444444444444332 22222334444444444444
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=27.43 E-value=21 Score=19.09 Aligned_cols=11 Identities=36% Similarity=1.126 Sum_probs=7.9
Q ss_pred CCCCcccccee
Q 041782 71 DRDCCSWDGVK 81 (821)
Q Consensus 71 ~~~~c~w~gv~ 81 (821)
....|+|+|..
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 34579999864
Done!