BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041783
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
          Length = 511

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 3   RLWKWYQNCLAVHPVKTQVVSSGLIWGFGDVAA 35
           R+W   +  +AV P +T   +   +WGFG VAA
Sbjct: 141 RVWALTRRAVAVVPGETPQDAGAQLWGFGRVAA 173


>pdb|3GWS|X Chain X, Crystal Structure Of T3-Bound Thyroid Hormone Receptor
          Length = 259

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 86  VGHFWYEGLDRFIRNRFLMQPNSPRFVATKVAIDGGLFGPLDLLVF 131
           V HFW + L +    R +   ++ RF+  KV     LF PL L VF
Sbjct: 213 VTHFWPKLLMKVTDLRMIGAXHASRFLHMKVECPTELFPPLFLEVF 258


>pdb|3IMY|A Chain A, Structure Of Tr-Beta Bound To Selective Thyromimetic Gc-1
          Length = 261

 Score = 28.5 bits (62), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 86  VGHFWYEGLDRFIRNRFLMQPNSPRFVATKVAIDGGLFGPLDLLVF 131
           V HFW + L +    R +   ++ RF+  KV     LF PL L VF
Sbjct: 214 VTHFWPKLLMKVTDLRMIGAXHASRFLHMKVECPTELFPPLFLEVF 259


>pdb|3JZC|A Chain A, Crystal Structure Of Tr-Beta Bound To The Selective
           Thyromimetic Triac
          Length = 263

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 86  VGHFWYEGLDRFIRNRFLMQPNSPRFVATKVAIDGGLFGPLDLLVF 131
           V HFW + L +    R +   ++ RF+  KV     LF PL L VF
Sbjct: 216 VTHFWPKLLMKVTDLRMIGAXHASRFLHMKVECPTELFPPLFLEVF 261


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.468 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,279,252
Number of Sequences: 62578
Number of extensions: 292327
Number of successful extensions: 685
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 4
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)