Query 041783
Match_columns 225
No_of_seqs 148 out of 1106
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bei_A Prothrombin; serine pro 32.8 14 0.00048 22.1 0.8 16 200-215 26-41 (44)
2 1etr_L Epsilon-thrombin; serin 24.3 22 0.00075 21.8 0.6 16 200-215 31-46 (49)
3 3b9f_L Prothrombin; michaelis 23.5 25 0.00087 21.5 0.8 16 200-215 31-46 (49)
4 2vqc_A Hypothetical 13.2 kDa p 19.2 55 0.0019 22.8 1.9 28 29-78 31-58 (118)
5 1p58_D Envelope protein M; fla 15.8 1.7E+02 0.0057 19.5 3.6 33 6-39 30-62 (75)
6 2kp7_A Crossover junction endo 13.6 66 0.0022 22.0 1.2 32 10-41 45-77 (87)
7 3gxe_F Collagen alpha-1(I) cha 13.2 68 0.0023 16.4 0.8 7 219-225 10-16 (23)
8 2ksd_A Aerobic respiration con 11.4 32 0.0011 25.1 -1.1 68 6-94 9-76 (115)
9 1z2z_A Probable tRNA pseudouri 9.7 74 0.0025 28.3 0.4 30 173-202 258-288 (446)
10 1szw_A TRNA pseudouridine synt 8.9 1.2E+02 0.004 26.6 1.4 30 173-202 205-235 (379)
No 1
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=32.81 E-value=14 Score=22.11 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.4
Q ss_pred hhCCCcccchhhhccc
Q 041783 200 EQQEDAPWKQWIKSFL 215 (225)
Q Consensus 200 ~~~~~~~~~~~~~~~~ 215 (225)
.+.++..|+|++.||.
T Consensus 26 ~~~~D~~E~ELl~SY~ 41 (44)
T 3bei_A 26 KSLEDKTERELLESYI 41 (44)
T ss_dssp GTCCCSSHHHHHHHCC
T ss_pred hccccccHHHHHHHHh
Confidence 4567899999999986
No 2
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=24.32 E-value=22 Score=21.80 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=12.9
Q ss_pred hhCCCcccchhhhccc
Q 041783 200 EQQEDAPWKQWIKSFL 215 (225)
Q Consensus 200 ~~~~~~~~~~~~~~~~ 215 (225)
.+.++..|||++.||.
T Consensus 31 ~~~~D~~E~ELleSY~ 46 (49)
T 1etr_L 31 KQVQDQTEKELFESYI 46 (49)
T ss_dssp GTCCCTTHHHHHHHHT
T ss_pred hccccccHHHHHHHHh
Confidence 4566889999999986
No 3
>3b9f_L Prothrombin; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 1tb6_L* 2b5t_A* 1jou_A* 3gis_A 1jmo_L*
Probab=23.49 E-value=25 Score=21.51 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=12.9
Q ss_pred hhCCCcccchhhhccc
Q 041783 200 EQQEDAPWKQWIKSFL 215 (225)
Q Consensus 200 ~~~~~~~~~~~~~~~~ 215 (225)
.+.++..|+|++.||.
T Consensus 31 ~~~~D~~E~ELleSY~ 46 (49)
T 3b9f_L 31 KSLEDKTERELLESYI 46 (49)
T ss_dssp GTCCCSSHHHHHHHTC
T ss_pred hccccccHHHHHHHHh
Confidence 4556889999999986
No 4
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=19.21 E-value=55 Score=22.81 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=20.1
Q ss_pred HHhHHHHHhhhhhhhhhhcccCCCCCcccCCCCCCCccchHHHHHHHHHh
Q 041783 29 GFGDVAAQSITHLTAQNRLHNQNEKSTEDTGNGNNELKLNWNRVAKTSFF 78 (225)
Q Consensus 29 ~~gD~iaQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~R~~r~~~~ 78 (225)
.+-|++||.-.... ..++..|++++.+-
T Consensus 31 sledilaqfeis~~----------------------sayniqr~l~~ice 58 (118)
T 2vqc_A 31 TLEDILAQFEISVP----------------------SAYNIQRALKAICE 58 (118)
T ss_dssp CHHHHHHHHCCCHH----------------------HHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc----------------------hHhHHHHHHHHHHh
Confidence 45788888766543 25888899988763
No 5
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=15.80 E-value=1.7e+02 Score=19.46 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHhhCchHHHHHHHHHHHHHhHHHHHhhh
Q 041783 6 KWYQNCLAVHPVKTQVVSSGLIWGFGDVAAQSIT 39 (225)
Q Consensus 6 ~~Y~~~l~~~Pl~t~~~ts~~l~~~gD~iaQ~~~ 39 (225)
.+-+++.-|+|..+-++. .+.+.+|+...|++.
T Consensus 30 ~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrvi 62 (75)
T 1p58_D 30 QRIETWILRHPGFTIMAA-ILAYTIGTTHFQRVL 62 (75)
T ss_pred HHHHHHHHHChHHHHHHH-HHHHHHcCChHHHHH
Confidence 455677889999988888 888899999999875
No 6
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=13.65 E-value=66 Score=21.97 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=24.4
Q ss_pred HHHhhCch-HHHHHHHHHHHHHhHHHHHhhhhh
Q 041783 10 NCLAVHPV-KTQVVSSGLIWGFGDVAAQSITHL 41 (225)
Q Consensus 10 ~~l~~~Pl-~t~~~ts~~l~~~gD~iaQ~~~~~ 41 (225)
+.|+++|+ ++..-.+-.|-++|+-||+.+++.
T Consensus 45 ~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 45 RSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp HHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHH
Confidence 45678987 344555667889999999999875
No 7
>3gxe_F Collagen alpha-1(I) chain; protein-peptide complex, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3gxe_E*
Probab=13.23 E-value=68 Score=16.40 Aligned_cols=7 Identities=71% Similarity=1.298 Sum_probs=3.7
Q ss_pred CCCCCCC
Q 041783 219 GKKGHDG 225 (225)
Q Consensus 219 ~~~~~~~ 225 (225)
|.|||.|
T Consensus 10 G~KG~rG 16 (23)
T 3gxe_F 10 GMKGHRG 16 (26)
T ss_pred CCCCCcC
Confidence 5555543
No 8
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=11.40 E-value=32 Score=25.06 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=43.5
Q ss_pred HHHHHHHhhCchHHHHHHHHHHHHHhHHHHHhhhhhhhhhhcccCCCCCcccCCCCCCCccchHHHHHHHHHhccccchh
Q 041783 6 KWYQNCLAVHPVKTQVVSSGLIWGFGDVAAQSITHLTAQNRLHNQNEKSTEDTGNGNNELKLNWNRVAKTSFFGFAFVGP 85 (225)
Q Consensus 6 ~~Y~~~l~~~Pl~t~~~ts~~l~~~gD~iaQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~R~~r~~~~G~~~~gP 85 (225)
..|-++..|--.+.-++.++++..+-+++.|.+...--. .++++.=..|..+||. +.+|
T Consensus 9 q~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~--------------------G~v~~~Di~rsI~Fgl-i~aP 67 (115)
T 2ksd_A 9 QYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLH--------------------GQVESIDVIRSIFFGL-LITP 67 (115)
T ss_dssp ------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSC--------------------CCSSSSSCCSTTTHHH-HHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhc--------------------ccchHHHHHHHHHHHH-HHHH
Confidence 456666666666666777788888889999998876531 1233444445667787 6899
Q ss_pred hHHHHHHHH
Q 041783 86 VGHFWYEGL 94 (225)
Q Consensus 86 ~~h~wy~~L 94 (225)
+.-+.+..+
T Consensus 68 ~viYFls~v 76 (115)
T 2ksd_A 68 WAVYFLSVV 76 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888765
No 9
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=9.65 E-value=74 Score=28.33 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=26.2
Q ss_pred eeeecCCcchhhhhHH-HHHHHHHHHHhhhC
Q 041783 173 FRFVPVPYQLLYVNIF-CLLDSCFLSWIEQQ 202 (225)
Q Consensus 173 F~~VP~~~Rvlf~n~v-~~~Wn~yLS~~~~~ 202 (225)
+.-+|...|.+|++.. |.+||-.+|-.-..
T Consensus 258 ~~~ipr~lr~myv~AyQS~lfN~~lS~Ri~~ 288 (446)
T 1z2z_A 258 FRVLPQNLYRMFVHGYQSYIYNIILCRRIEA 288 (446)
T ss_dssp GTTSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999986 99999999988764
No 10
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=8.95 E-value=1.2e+02 Score=26.57 Aligned_cols=30 Identities=3% Similarity=-0.123 Sum_probs=22.4
Q ss_pred eeeecCCcchhhhhHH-HHHHHHHHHHhhhC
Q 041783 173 FRFVPVPYQLLYVNIF-CLLDSCFLSWIEQQ 202 (225)
Q Consensus 173 F~~VP~~~Rvlf~n~v-~~~Wn~yLS~~~~~ 202 (225)
+..+|...|.+|++.. |.+||-.||-.-..
T Consensus 205 ~~~ipr~lr~~yv~AyQS~lfN~~lS~Ri~~ 235 (379)
T 1szw_A 205 TPVRDRNKRSFWLSAARSALFNQIVAERLKK 235 (379)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6679999999999986 99999999988754
Done!