Query 041783
Match_columns 225
No_of_seqs 148 out of 1106
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 18:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041783.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041783hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 30.0 13 0.00096 22.2 1.9 27 29-77 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 19.2 37 0.0027 19.6 2.4 30 66-95 7-42 (52)
3 d2v9va1 a.4.5.35 (A:377-437) C 10.5 66 0.0048 18.2 1.8 11 32-42 5-15 (61)
4 d1h2vc1 a.118.1.14 (C:29-290) 9.0 3.4E+02 0.025 19.9 6.3 69 110-178 37-114 (262)
5 d3ct6a1 c.54.1.2 (A:1-123) PTS 7.3 1.4E+02 0.01 19.8 2.8 33 121-153 87-119 (123)
6 d1ppjg_ f.23.13.1 (G:) Ubiquin 6.4 2E+02 0.014 17.5 2.9 29 107-135 32-60 (75)
7 d2g7la2 a.121.1.1 (A:87-230) P 6.1 1.5E+02 0.011 19.4 2.4 23 2-24 8-30 (144)
8 d1jqra_ d.218.1.2 (A:) DNA pol 5.8 72 0.0053 22.6 0.6 16 167-182 159-174 (174)
9 d1r2za1 a.156.1.2 (A:135-228) 5.3 90 0.0065 19.7 0.7 16 112-127 24-39 (94)
10 d1tdza1 a.156.1.2 (A:132-219) 5.3 85 0.0062 19.6 0.6 17 112-128 24-40 (88)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=30.01 E-value=13 Score=22.19 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHhHHHHHhhhhhhhhhhcccCCCCCcccCCCCCCCccchHHHHHHHHH
Q 041783 29 GFGDVAAQSITHLTAQNRLHNQNEKSTEDTGNGNNELKLNWNRVAKTSF 77 (225)
Q Consensus 29 ~~gD~iaQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~R~~r~~~ 77 (225)
.+-|++||.-.... ..++..|++++.+
T Consensus 22 ~ledilaqfeis~~----------------------~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP----------------------SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH----------------------HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc----------------------hHhHHHHHHHHHH
Confidence 35788888766543 2578888888865
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=19.18 E-value=37 Score=19.56 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHhccccchhhHHHH------HHHHH
Q 041783 66 KLNWNRVAKTSFFGFAFVGPVGHFW------YEGLD 95 (225)
Q Consensus 66 ~~D~~R~~r~~~~G~~~~gP~~h~w------y~~Ld 95 (225)
-+|++|++.-.....+..+-+.|+- |++||
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWle 42 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 4799998765555544556666654 55555
No 3
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=10.52 E-value=66 Score=18.23 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=8.8
Q ss_pred HHHHHhhhhhh
Q 041783 32 DVAAQSITHLT 42 (225)
Q Consensus 32 D~iaQ~~~~~~ 42 (225)
.++||.+.+.+
T Consensus 5 kilaqiiqehr 15 (61)
T d2v9va1 5 KILAQIIQEHR 15 (61)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHHH
Confidence 47899998875
No 4
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.03 E-value=3.4e+02 Score=19.93 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcCCCh---hhHHHHHHHhhHHHHHhc-c-----ccchhhhhhheeeecC
Q 041783 110 RFVATKVAIDGGLFGPLDLLVFFSYMGFAAGKSF---PQVKEDVKRDFLPALILE-G-----GLWPLLQVANFRFVPV 178 (225)
Q Consensus 110 ~~v~~Kv~~Dq~i~~P~~~~~F~~~~~~l~G~s~---~~~~~~lk~~~~~~l~~~-~-----~~Wp~~q~inF~~VP~ 178 (225)
+..+.+.+++.....|..+..|=+..++++-+.. +++.+++.+.+-..+..+ | .+--+++++|+..++.
T Consensus 37 ~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 37 KSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 5667778888888888888887777788776653 255566666666666543 1 1224555666665544
No 5
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=7.33 E-value=1.4e+02 Score=19.79 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHHhhcCCChhhHHHHHHHh
Q 041783 121 GLFGPLDLLVFFSYMGFAAGKSFPQVKEDVKRD 153 (225)
Q Consensus 121 ~i~~P~~~~~F~~~~~~l~G~s~~~~~~~lk~~ 153 (225)
++-+|+.-..+-+......|.+++++.+++++-
T Consensus 87 ii~~p~tegal~Aa~~a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 87 IFNVPLIEGAYTASALLEAGATFEAIKEQLEKM 119 (123)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCCHHHHHHHHGGG
T ss_pred EEcCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 356778888888888888999999999998653
No 6
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.40 E-value=2e+02 Score=17.51 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 041783 107 NSPRFVATKVAIDGGLFGPLDLLVFFSYM 135 (225)
Q Consensus 107 ~~~~~v~~Kv~~Dq~i~~P~~~~~F~~~~ 135 (225)
+...++++++--+-+..+|-++..|+++.
T Consensus 32 ~gi~N~~RR~~~~~l~v~PPfi~~Y~iy~ 60 (75)
T d1ppjg_ 32 KGIPNVLRRTRACILRVAPPFVAFYLVYT 60 (75)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHhHHhceEEcCHHHHHHHHHH
Confidence 44567777777655667777777776664
No 7
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.07 E-value=1.5e+02 Score=19.42 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhhCchHHHHHHH
Q 041783 2 LRLWKWYQNCLAVHPVKTQVVSS 24 (225)
Q Consensus 2 ~rl~~~Y~~~l~~~Pl~t~~~ts 24 (225)
+.+...|.+.+.+||-+...+.+
T Consensus 8 r~~a~~~r~~l~~HP~~~~l~~~ 30 (144)
T d2g7la2 8 RAVLTSYTLVLFAHPQLARSALV 30 (144)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHhc
Confidence 46778899999999988776654
No 8
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}
Probab=5.84 E-value=72 Score=22.61 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=12.8
Q ss_pred hhhhhheeeecCCcch
Q 041783 167 LLQVANFRFVPVPYQL 182 (225)
Q Consensus 167 ~~q~inF~~VP~~~Rv 182 (225)
..+.++.-||||+.|+
T Consensus 159 If~~LGl~yipPe~R~ 174 (174)
T d1jqra_ 159 LIKELGFTYRIPKKRL 174 (174)
T ss_dssp HHHHHTCCCCCGGGCC
T ss_pred HHHHcCCCCCChHhcC
Confidence 4667788899999885
No 9
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.30 E-value=90 Score=19.73 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhhhHH
Q 041783 112 VATKVAIDGGLFGPLD 127 (225)
Q Consensus 112 v~~Kv~~Dq~i~~P~~ 127 (225)
.++.+++||.+++-+.
T Consensus 24 ~ik~~LlDQ~~~aGiG 39 (94)
T d1r2za1 24 SVKALLLDQTVVAGFG 39 (94)
T ss_dssp BHHHHHHCTTTSSSCC
T ss_pred cHHHHHHhccccCCcc
Confidence 4788999999999884
No 10
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=5.27 E-value=85 Score=19.59 Aligned_cols=17 Identities=12% Similarity=0.045 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhhHHH
Q 041783 112 VATKVAIDGGLFGPLDL 128 (225)
Q Consensus 112 v~~Kv~~Dq~i~~P~~~ 128 (225)
.++.+++||-+++-+.+
T Consensus 24 ~ik~~LldQ~~iaGIGN 40 (88)
T d1tdza1 24 KIKPYLLEQTLVAGLGN 40 (88)
T ss_dssp BHHHHHHTSSSSSCCCH
T ss_pred cHHHHHHhccccCCcCh
Confidence 47889999999988854
Done!