BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041785
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 30/154 (19%)
Query: 23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
S++ L +AA +G+ + KD+ + + + T LH A+ + +EI
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHY---------AAKEGHKEI 52
Query: 83 LEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
+++ + VNAK G TPLH AAK H +IV++LI +
Sbjct: 53 VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA------------------ 94
Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ +++ T LH A G+ E+VK+L + D
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 21/100 (21%)
Query: 74 ASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEP 130
A+ + +EI+++ + VNAK G TPLH AAK H +IV++LI +
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG---------- 126
Query: 131 ESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE 170
+ +++ T L A HGN E+VK+L ++
Sbjct: 127 --------ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 18/78 (23%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
KG+TPLHLAA Y H +IV VL+ +HG + + +N+ +T LH A
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLL------KHGAD------------VNAHDNDGSTPLHLA 87
Query: 156 VSHGNVEVVKILTREDPD 173
G++E+V++L + D
Sbjct: 88 ALFGHLEIVEVLLKHGAD 105
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
S++ L +AA +G+ + KD+ + + + T LH +A+ +E+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLH---------HAAENGHKEV 52
Query: 83 LEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE---- 135
+++ + VNAK G TPLH AA+ H ++V++LI + D + + +
Sbjct: 53 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE 112
Query: 136 -AFRQMIRMV----------NNEKNTALHEAVSHGNVEVVKILTRE 170
+++++++ +++ T L A HGN EVVK+L ++
Sbjct: 113 NGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 19/107 (17%)
Query: 67 ICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHG 126
+ + EN + V++++E A + ++ G TPLH AA+ H ++V++LI +
Sbjct: 8 LIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA----- 61
Query: 127 DEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ +++ T LH A +G+ EVVK+L + D
Sbjct: 62 -------------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 21/103 (20%)
Query: 74 ASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEP 130
A+ K EI+E+ VNA GDTPLHLAA Y H +IV VL+ ++G +
Sbjct: 54 AAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLL------KNGADVN 107
Query: 131 ESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ F T LH A G++E+V++L + D
Sbjct: 108 ATDTYGF------------TPLHLAADAGHLEIVEVLLKYGAD 138
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 88 ALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQL----AQHGDEEPESGIEAFRQM--- 140
AL+ +A+G T LHLAAK H+++V+ L+ Q+ G P ++ +
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 141 ---------IRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
I + +NE+N LH A G V++ +IL D
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 79 VEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIER 119
+ EIL L VN GD+PLH+AA+ + +D V + + R
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPES---------GIEAFRQMIRM------ 143
+PLH AA+ H DI +L++ E+ + +EA + +I+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 144 VNNEKNTALHEAVSHGNVEVVKIL 167
+ E +T LH A G+ EVV+ L
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYL 96
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
+A G TPLHLAA Y H +IV VL+ +HG + + ++ +T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLL------KHGAD------------VNAIDIXGSTPLH 85
Query: 154 EAVSHGNVEVVKILTREDPD 173
A G++E+V++L + D
Sbjct: 86 LAALIGHLEIVEVLLKHGAD 105
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 83 LEICPALL---LQVNA---KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LEI LL VNA G TPLHLAA H +IV VL+ +HG +
Sbjct: 60 LEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLL------KHGAD-------- 105
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ V+ +T LH A G++E+V++L + D
Sbjct: 106 ----VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 30/154 (19%)
Query: 23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
S++ L +AA +G+ + KD+ + + + T LH+ A+ +E+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHL---------AAENGHKEV 52
Query: 83 LEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
+++ + NAK G TPLHLAA+ H ++V++L+ + +P +
Sbjct: 53 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA-------DPNA------- 98
Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+++ T LH A +G+ EVVK+L + D
Sbjct: 99 ----KDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 24/93 (25%)
Query: 84 EICPALLLQV---NAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
E+ LL Q NAK G TPLHLAA+ H ++V++L+ + +P +
Sbjct: 84 EVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA-------DPNTSDSDG 136
Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE 170
R T L A HGN EVVK+L ++
Sbjct: 137 R-----------TPLDLAREHGNEEVVKLLEKQ 158
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
+A G TPLHLAA Y H +IV VL+ +HG + + ++ +T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLL------KHGAD------------VNAIDIMGSTPLH 85
Query: 154 EAVSHGNVEVVKILTREDPD 173
A G++E+V++L + D
Sbjct: 86 LAALIGHLEIVEVLLKHGAD 105
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 83 LEICPALL---LQVNA---KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LEI LL VNA G TPLHLAA H +IV VL+ +HG +
Sbjct: 60 LEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLL------KHGAD-------- 105
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ V+ +T LH A G++E+V++L + D
Sbjct: 106 ----VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 68 CQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD 127
C E E V+E+L P+LLLQ + G PLH + + +I L+ + + D
Sbjct: 10 CMENEFFK---VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66
Query: 128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
+SG T H A S GN+EVVK L
Sbjct: 67 YPDDSGW---------------TPFHIACSVGNLEVVKSL 91
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 68 CQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD 127
C E E V+E+L P+LLLQ + G PLH + + +I L+ + + D
Sbjct: 10 CMENEFFK---VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66
Query: 128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
+SG T H A S GN+EVVK L
Sbjct: 67 YPDDSGW---------------TPFHIACSVGNLEVVKSL 91
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 38/146 (26%)
Query: 29 LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
L AA +G +E K + +E+ V+ K+ T LH+ N + V+ +LE
Sbjct: 6 LHLAARNGHLEVVKLL----LEAGADVNAKDKNGRTPLHL-----AARNGHLEVVKLLLE 56
Query: 85 ICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMI 141
VNAK G TPLHLAA+ H ++V++L+ E+G + +
Sbjct: 57 AGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLL-------------EAGAD-----V 94
Query: 142 RMVNNEKNTALHEAVSHGNVEVVKIL 167
+ T LH A +G++EVVK+L
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 24/97 (24%)
Query: 83 LEICPALL---LQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LE+ LL VNAK G TPLHLAA+ H ++V++L+E +G +
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-------------AGAD- 60
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ + T LH A +G++EVVK+L D
Sbjct: 61 ----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAA+ H ++V++L+ E+G + + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-------------EAGAD-----VNAKDKNGRTPLHLAA 43
Query: 157 SHGNVEVVKILTREDPD 173
+G++EVVK+L D
Sbjct: 44 RNGHLEVVKLLLEAGAD 60
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 29 LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
L AA +G +E K + +E+ V+ K+ T LH+ N + V+ +LE
Sbjct: 39 LHLAARNGHLEVVKLL----LEAGADVNAKDKNGRTPLHL-----AARNGHLEVVKLLLE 89
Query: 85 ICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIE 118
VNAK G TPLHLAA+ H ++V++L+E
Sbjct: 90 AGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAAK H +IV VL++ + + +N T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLK------------------YGADVNAWDNYGATPLHLAA 88
Query: 157 SHGNVEVVKILTREDPD 173
+G++E+V++L + D
Sbjct: 89 DNGHLEIVEVLLKHGAD 105
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 81 EILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
EI+E+ VNA G TPLHLAA H +IV VL+ +HG + E F
Sbjct: 61 EIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLL------KHGADVNAKDYEGF 114
Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
T LH A G++E+V++L + D
Sbjct: 115 ------------TPLHLAAYDGHLEIVEVLLKYGAD 138
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 18/100 (18%)
Query: 68 CQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGD 127
C E E V+E+L P+LLLQ + G PLH + + +I L+ + + D
Sbjct: 10 CMENEFFK---VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66
Query: 128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
+SG T H A S GN+EVVK L
Sbjct: 67 YPDDSGW---------------TPFHIACSVGNLEVVKSL 91
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 97 GDTPLHLAAKYSHFDIVRVL------------IERAQLAQHGDEEPESGIEAFRQMIRMV 144
G +PLHLAA+Y HF VL ++R L E + +E + V
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 145 NNE---KNTALHEAVSHGNVEVVKILTREDPD 173
N + K TALH A H + EVV++L + D
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 83 LEICPALL---LQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LEI LL VNAK G TPLHLAA+ H +IV VL+ ++G + S
Sbjct: 60 LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL------KNGADVNASDSHG 113
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
F T LH A G++E+V++L + D
Sbjct: 114 F------------TPLHLAAKRGHLEIVEVLLKNGAD 138
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 93 VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
VNA+ G TPLHLAA + H +IV VL++ D G+
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD---SLGV--------------- 81
Query: 150 TALHEAVSHGNVEVVKILTREDPDYPYS 177
T LH A G++E+V++L + D S
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNAS 109
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 21/84 (25%)
Query: 93 VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
VNA+ GDTPLHLAA+ H +IV VL++ + ++ +
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNG------------------ADVNALDFSGS 81
Query: 150 TALHEAVSHGNVEVVKILTREDPD 173
T LH A G++E+V++L + D
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGAD 105
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 81 EILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIE 118
EI+E+ VNA G TPLHLAA H +IV VL++
Sbjct: 94 EIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
KG TPLH+AAKY + +L+ER D P + T LH A
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLER-------DAHPNA-----------AGKNGLTPLHVA 186
Query: 156 VSHGNVEVVKILT-REDPDYPYSANNY 181
V H N+++VK+L R + + N Y
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGY 213
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ---------------M 140
+G TPLHLAA+ H ++V +L+ + G++ + + Q M
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Query: 141 IRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ T LH A +GN+++VK L + D
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 93 VNAK---GDTPLHLAAKYSHFDIVRVLIERA 120
VNAK G +PLH AA+ H DIV +L++
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIE 118
N K +TPLH+AA+ H ++ + L++
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQ 68
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 20/70 (28%)
Query: 99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEK-NTALHEAVS 157
TPLH+A+ H IV+ L++R P V+N K T LH A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRG-------ASPN------------VSNVKVETPLHMAAR 56
Query: 158 HGNVEVVKIL 167
G+ EV K L
Sbjct: 57 AGHTEVAKYL 66
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 30/154 (19%)
Query: 23 SQMDPNLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEI 82
S++ L +AA +G+ + KD+ + + + T LH A+ +EI
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHY---------AAENGHKEI 52
Query: 83 LEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
+++ + NAK G TPLH AA+ H +IV++L+ + +P +
Sbjct: 53 VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA-------DPNA------- 98
Query: 140 MIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+++ T LH A +G+ E+VK+L + D
Sbjct: 99 ----KDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 80 EEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
+EI+++ + NAK G TPLH AA+ H +IV++L+ + +P +
Sbjct: 83 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA-------DPNT---- 131
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE 170
+++ T L A HGN E+VK+L ++
Sbjct: 132 -------SDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 83 LEICPALL---LQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LEI LL VNA G TPLHLAA + H +IV VL++ D ++GI
Sbjct: 60 LEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD---DNGI-- 114
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
T LH A + G++E+V++L + D
Sbjct: 115 -------------TPLHLAANRGHLEIVEVLLKYGAD 138
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAA + H +IV VL++ + + A+ + +T LH A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNG-----------ADVNAYDTL-------GSTPLHLAA 88
Query: 157 SHGNVEVVKILTREDPD 173
G++E+V++L + D
Sbjct: 89 HFGHLEIVEVLLKNGAD 105
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 22/105 (20%)
Query: 64 INIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLA 123
++ C+E +A V E+L + A + +N DTPLHLAA + H DIV+ L++
Sbjct: 43 LHWACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ----- 93
Query: 124 QHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT 168
++ I VN N LH A G +V + L
Sbjct: 94 -------------YKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 90 LLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
L Q + G +PLH A + +V +LI R I ++N +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGA------------------RINVMNRGDD 73
Query: 150 TALHEAVSHGNVEVVKILTREDPD 173
T LH A SHG+ ++V+ L + D
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKAD 97
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 24/91 (26%)
Query: 83 LEICPALL---LQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LE+ LL VNAK G TPLHLAA+ H ++V++L+E +G +
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-------------AGAD- 60
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
+ + T LH A +G++EVVK+L
Sbjct: 61 ----VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAA+ H ++V++L+ E+G + + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-------------EAGAD-----VNAKDKNGRTPLHLAA 43
Query: 157 SHGNVEVVKILTREDPD 173
+G++EVVK+L D
Sbjct: 44 RNGHLEVVKLLLEAGAD 60
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 29 LFKAAADGSVEPFKDMAREVIESSLTVHTKN----TILHINIICQETENASTKFVEEILE 84
L AA +G +E K + +E+ V+ K+ T LH+ N + V+ +LE
Sbjct: 6 LHLAARNGHLEVVKLL----LEAGADVNAKDKNGRTPLHL-----AARNGHLEVVKLLLE 56
Query: 85 ICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIE 118
VNAK G TPLHLAA+ H ++V++L+E
Sbjct: 57 AGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 81 EILEICPALLLQVNA---KGDTPLHLAAKYSHFDIVRVLIERA 120
EI+E+ VNA G TPLHLAAKY H +IV VL++
Sbjct: 94 EIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGD---------EEPESGIEAFRQMIR----- 142
G TPLHLAA H +IV VL++ D +E +++
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 143 -MVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+N+ +T LH A +G++E+V++L + D
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 111 DIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTRE 170
D+ + L+E A+ Q D+E + A + +N+ T LH A S+G++E+V++L +
Sbjct: 13 DLGKKLLEAARAGQ--DDEVRI-LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 171 DPDYPYS 177
D S
Sbjct: 70 GADVNAS 76
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 81 EILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
EI+E+ VNA G TPLHLAA H +IV VL++ +
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK------------------Y 102
Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ ++ + T LH A G++E+V++L + D
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 22/105 (20%)
Query: 64 INIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLA 123
++ C+E +A V E+L + A + +N DTPLHLAA + H DIV+ L++
Sbjct: 38 LHWACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ----- 88
Query: 124 QHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILT 168
++ I VN N LH A G +V + L
Sbjct: 89 -------------YKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 90 LLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
L Q + G +PLH A + +V +LI R I ++N +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGA------------------RINVMNRGDD 68
Query: 150 TALHEAVSHGNVEVVKILTREDPD 173
T LH A SHG+ ++V+ L + D
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKAD 92
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 93 VNAKGDTPLHLAAKYSHFDIVRVLIERAQ----LAQHG------------DEEPESGIEA 136
++ +G + +HLAA++ H IV LI + Q + Q+G +P +
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 137 FRQMIRMVNN-EKNTALHEAVSHGNVEVVKIL 167
F + + + KNTALH AV GN V+ +L
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 81 EILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
EI+E+ V+A G TPLHLAA + H +IV VL++
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG----------------- 103
Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ ++++ T LH A G +E+V++L + D
Sbjct: 104 -ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIE------RAQLAQH---------GDEEPESGIEAFR 138
NA PLHLA + HF +V+ L++ + L+ + G E + +
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 139 QMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
I NN+ NTALHEAV +V VV++L
Sbjct: 176 ASINASNNKGNTALHEAVIEKHVFVVELL 204
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 29 LFKAAADGSVEPFK---DMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEI 85
L +A ADG +E + + E +E + + + +CQ + A ++ L
Sbjct: 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPA---QKRLAK 71
Query: 86 CPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIR 142
PA L VN G +PLH+AA + D++ +L+ +HG +G
Sbjct: 72 VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLL------KHG---ANAGAR------- 115
Query: 143 MVNNEKNTALHEAVSHGNVEVVKIL 167
N ++ LH A G+ +VVK L
Sbjct: 116 --NADQAVPLHLACQQGHFQVVKCL 138
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAAK H +IV VL+ +HG + S I T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL------KHGADVNASDIWG------------RTPLHLAA 88
Query: 157 SHGNVEVVKILTREDPD 173
+ G++E+V++L D
Sbjct: 89 TVGHLEIVEVLLEYGAD 105
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 31/160 (19%)
Query: 18 GEIKQSQMDPNLFKAAADGSVEPFKDMAR-EVIESSLTVHTKNTILHINIICQETENAST 76
G + S+ D L +AA G VE K + + + ++T LH
Sbjct: 1 GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF-----AAGYNRV 55
Query: 77 KFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESG 133
VE +L+ V+AK G PLH A Y H+++ +L+ +HG
Sbjct: 56 SVVEYLLQHGA----DVHAKDKGGLVPLHNACSYGHYEVAELLV------KHG------- 98
Query: 134 IEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
++ + + K T LHEA + G E+ K+L + D
Sbjct: 99 -----AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 21/84 (25%)
Query: 93 VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
VNAK G TPLHLAA+ H +IV VL+ ++G + + + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-----VNAKDKDGY 69
Query: 150 TALHEAVSHGNVEVVKILTREDPD 173
T LH A G++E+V++L + D
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD 93
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 21/84 (25%)
Query: 93 VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
VNAK G TPLHLAA+ H +IV VL+ ++G + + + +
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-----VNAKDKDGY 81
Query: 150 TALHEAVSHGNVEVVKILTREDPD 173
T LH A G++E+V++L + D
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGAD 105
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 21/84 (25%)
Query: 93 VNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN 149
VNAK G TPLHLAA+ H +IV VL+ ++G + + + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL-------------KAGAD-----VNAKDKDGY 69
Query: 150 TALHEAVSHGNVEVVKILTREDPD 173
T LH A G++E+V++L + D
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD 93
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 93 VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
V+ G TPLHLAA H +IV VL+ +HG + + + F T L
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLL------KHGADVDAADVYGF------------TPL 84
Query: 153 HEAVSHGNVEVVKILTREDPD 173
H A G++E+V++L + D
Sbjct: 85 HLAAMTGHLEIVEVLLKYGAD 105
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAA H +IV VL++ + + AF +T LH A
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYG-----------ADVNAFDMT-------GSTPLHLAA 121
Query: 157 SHGNVEVVKILTREDPD 173
G++E+V++L + D
Sbjct: 122 DEGHLEIVEVLLKYGAD 138
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 81 EILEICPALLLQVNA---KGDTPLHLAAKYSHFDIVRVLIE 118
EI+E+ VNA G TPLHLAA H +IV VL++
Sbjct: 94 EIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 30/118 (25%)
Query: 59 NTILHINIICQETENASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRV 115
NT LH +N + V+++L VNA+ G+TPLHLAAK H +IV++
Sbjct: 10 NTPLH-----NAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 116 LIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
L LA+ D + + + NT H A +G+ E+VK+L + D
Sbjct: 61 L-----LAKGAD-------------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G+TPLH AAK H + V+ L+ + + + + NT LH A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKG------------------ADVNARSKDGNTPLHLAA 50
Query: 157 SHGNVEVVKILTREDPD 173
+G+ E+VK+L + D
Sbjct: 51 KNGHAEIVKLLLAKGAD 67
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAAK H +IV VL+ +HG + + ++ T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL------KHGAD------------VNASDSWGRTPLHLAA 88
Query: 157 SHGNVEVVKILTREDPD 173
+ G++E+V++L D
Sbjct: 89 TVGHLEIVEVLLEYGAD 105
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 83 LEICPALLLQ------VNAKGDTPLHLAAKYSHFDIVRVLIERA 120
LEI LL ++A G+TPLHL A Y H +IV VL++
Sbjct: 60 LEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAA H +IV VL++ + I+A + T LH
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGA--------DVNAIDAIGE----------TPLHLVA 88
Query: 157 SHGNVEVVKILTREDPD 173
+G++E+V++L + D
Sbjct: 89 MYGHLEIVEVLLKHGAD 105
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 24/97 (24%)
Query: 83 LEICPALL---LQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LEI LL VNA G TPLHLAA H +IV VL+ +HG +
Sbjct: 52 LEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLL------KHGAD-------- 97
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+ + T LH A G +E+V++L + D
Sbjct: 98 ----VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKN---TALH 153
G TPLHLAA+ H +IV VL+ ++G + VN E N T LH
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLL------KYGAD---------------VNAEDNFGITPLH 85
Query: 154 EAVSHGNVEVVKILTREDPD 173
A G++E+V++L + D
Sbjct: 86 LAAIRGHLEIVEVLLKHGAD 105
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAA + H +IV VL++ D + + T LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGA-----DVNADDSLGV-------------TPLHLAA 88
Query: 157 SHGNVEVVKILTREDPDYPYSANN 180
G++EVV++L + D + +N
Sbjct: 89 DRGHLEVVEVLLKNGADVNANDHN 112
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 83 LEICPALL---LQVNAK---GDTPLHLAAKYSHFDIVRVLIERA 120
LE+ LL VNA G TPLHLAA H +IV VL++
Sbjct: 93 LEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 18/78 (23%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
+G TPLHLAA H +IV VL+ +HG + + + + T LH A
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLL------KHGAD------------VNARDTDGWTPLHLA 87
Query: 156 VSHGNVEVVKILTREDPD 173
+G++E+V++L + D
Sbjct: 88 ADNGHLEIVEVLLKYGAD 105
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 81 EILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERA 120
EI+E+ VNA+ G TPLHLAA H +IV VL++
Sbjct: 94 EIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 21/101 (20%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIERA---------------QLAQHGDEEPESGIEAFR 138
++ G+T LH + +++F +V+ L++ L + + IE
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 139 QMIRMVN-NEK-----NTALHEAVSHGNVEVVKILTREDPD 173
Q+ R+ N N K TAL AVSHG V+VVK L + D
Sbjct: 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD 208
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 80 EEI-LEICPALL---LQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPE---S 132
EEI +E+ P L+ L + D P L + VL E +LA D PE
Sbjct: 28 EEIRMELSPDLISACLALEKYLDNPNALTERELKVAYTTVLQEWLRLACRSDAHPELVRR 87
Query: 133 GIEAFRQM--------IRMVNNEKNTALHEAVSHGNVEVVKIL 167
+ FR M + + ++ NTALH +VSH N VV+ L
Sbjct: 88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQL 130
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAAK H +IV VL+ +HG + I T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL------KHGADVNARDIWG------------RTPLHLAA 88
Query: 157 SHGNVEVVKILTREDPD 173
+ G++E+V++L D
Sbjct: 89 TVGHLEIVEVLLEYGAD 105
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 20 IKQSQMDPNLFKAAADGSVEPFKDMAR-EVIESSLTVHTKNTILHINIICQETENASTKF 78
+ S+ D L +AA G VE K + + + ++T LH
Sbjct: 7 LGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF-----AAGYNRVSV 61
Query: 79 VEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIE 135
VE +L+ V+AK G PLH A Y H+++ +L+ +HG
Sbjct: 62 VEYLLQHGA----DVHAKDKGGLVPLHNACSYGHYEVAELLV------KHG--------- 102
Query: 136 AFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
++ + + K T LHEA + G E+ K+L + D
Sbjct: 103 ---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G PLH A Y H+++ +L+ +HG ++ + + K T LHEA
Sbjct: 77 GLVPLHNACSYGHYEVAELLV------KHG------------AVVNVADLWKFTPLHEAA 118
Query: 157 SHGNVEVVKILTREDPD 173
+ G E+ K+L + D
Sbjct: 119 AKGKYEICKLLLQHGAD 135
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 24/97 (24%)
Query: 83 LEICPALL---LQVNA---KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LEI LL VNA G TPL LAA + H +IV VL++ D E
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG------ 113
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
+T LH A G++E+V++L + D
Sbjct: 114 ------------HTPLHLAAMFGHLEIVEVLLKNGAD 138
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 24/97 (24%)
Query: 83 LEICPALLLQ------VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEA 136
LEI LL V+ G TPLHLAA H +IV VL++ D +GI
Sbjct: 48 LEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD---ATGI-- 102
Query: 137 FRQMIRMVNNEKNTALHEAVSHGNVEVVKILTREDPD 173
T L+ A G++E+V++L + D
Sbjct: 103 -------------TPLYLAAYWGHLEIVEVLLKHGAD 126
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 24/115 (20%)
Query: 53 LTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDI 112
T H T+LHI I + + VE +L+ ++ +A G TPLH A + H +
Sbjct: 5 FTNHRGETLLHIASIKGDIPS-----VEYLLQNGSDPNVKDHA-GWTPLHEACNHGHLKV 58
Query: 113 VRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
V +L++ + ++ + ++ LH+A +G+V++VK+L
Sbjct: 59 VELLLQH------------------KALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 77 KFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLI 117
K VE +L+ AL+ + D+PLH AAK H DIV++L+
Sbjct: 57 KVVELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 24/90 (26%)
Query: 84 EICPALLLQ------VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
EI ALL++ VN G TPLH AA + +I +L+E G P++
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-------GGANPDA----- 134
Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
++ TA+H A + GN+++V IL
Sbjct: 135 ------KDHYDATAMHRAAAKGNLKMVHIL 158
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 24/90 (26%)
Query: 84 EICPALLLQ------VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
EI ALL++ VN G TPLH AA + +I +L+E G P++
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-------GGANPDA----- 134
Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
++ TA+H A + GN+++V IL
Sbjct: 135 ------KDHYDATAMHRAAAKGNLKMVHIL 158
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIE 118
G TPLHLAA+ H ++V++L+E
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE 60
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIE 118
G TPLHLAA+ H ++V++L+E
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE 78
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 18/77 (23%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G TPLHLAA H +IV VL++ + N T LH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNG------------------ADVNATGNTGRTPLHLAA 88
Query: 157 SHGNVEVVKILTREDPD 173
++E+V++L + D
Sbjct: 89 WADHLEIVEVLLKHGAD 105
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 18/76 (23%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
+ + TPLHLAA Y+ IV++L+ QHG + + + LH
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLL------QHGAD------------VHAKDKGGLVPLH 96
Query: 154 EAVSHGNVEVVKILTR 169
A S+G+ EV ++L +
Sbjct: 97 NACSYGHYEVTELLLK 112
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 18/75 (24%)
Query: 99 TPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSH 158
TPLH+AA+ +H D++ V L +HG + + +++ TALH A
Sbjct: 249 TPLHVAAERAHNDVMEV------LHKHGAK------------MNALDSLGQTALHRAALA 290
Query: 159 GNVEVVKILTREDPD 173
G+++ ++L D
Sbjct: 291 GHLQTCRLLLSYGSD 305
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 93 VNAK---GDTPLHLAAKYSHFDIVRVLIE 118
VNAK G TPLHLAA+ H +IV VL++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 76 TKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERA 120
TK V+EIL+ + +V+ +G+TPL++A + +I + LI+R
Sbjct: 18 TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 70 ETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEE 129
E E + + + + +L Q + G+T LHLAA+YS D + L+E + A
Sbjct: 31 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN----- 85
Query: 130 PESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKILTR 169
+ +N T LH AVS V +IL R
Sbjct: 86 -------------IQDNMGRTPLHAAVSADAQGVFQILIR 112
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 92 QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
Q A G+T LH+AA Y + + VL+E A PE E + E TA
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAA---------PELVFEPMTSELY----EGQTA 78
Query: 152 LHEAVSHGNVEVVKIL 167
LH AV + NV +V+ L
Sbjct: 79 LHIAVINQNVNLVRAL 94
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 18/78 (23%)
Query: 92 QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
Q + G+T LHLAA+YS D + L+E + A + +N T
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADAN------------------IQDNMGRTP 93
Query: 152 LHEAVSHGNVEVVKILTR 169
LH AVS V +IL R
Sbjct: 94 LHAAVSADAQGVFQILIR 111
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 24/90 (26%)
Query: 84 EICPALL---LQVNA---KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
EI ALL QVNA G TPLH AA + +I +L+E G P++
Sbjct: 87 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE-------GGANPDA----- 134
Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
++ + TA+H A + GN++++ IL
Sbjct: 135 ------KDHYEATAMHRAAAKGNLKMIHIL 158
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
EE + I A + + + + TALH A S G+ E+V+ L
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 59
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 24/90 (26%)
Query: 84 EICPALL---LQVNA---KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
EI ALL QVNA G TPLH AA + +I +L+E G P++
Sbjct: 88 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE-------GGANPDA----- 135
Query: 138 RQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
++ + TA+H A + GN++++ IL
Sbjct: 136 ------KDHYEATAMHRAAAKGNLKMIHIL 159
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 128 EEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVVKIL 167
EE + I A + + + + TALH A S G+ E+V+ L
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 60
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 18/78 (23%)
Query: 92 QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
Q + G+T LHLAA+YS D + L+E ++ I+ +N T
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLE---------ASADANIQ---------DNMGRTP 61
Query: 152 LHEAVSHGNVEVVKILTR 169
LH AVS V +IL R
Sbjct: 62 LHAAVSADAQGVFQILIR 79
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 18/78 (23%)
Query: 92 QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
Q + G+T LHLAA+YS D + L+E + A + +N T
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASADAX------------------IQDNMGRTP 58
Query: 152 LHEAVSHGNVEVVKILTR 169
LH AVS V +IL R
Sbjct: 59 LHAAVSADAQGVFQILLR 76
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
+G+TPLHLA + V VL + +++ N +T LH A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPH------------LHSILKATNYNGHTCLHLA 121
Query: 156 VSHGNVEVVKILTREDPD 173
HG + +V++L D
Sbjct: 122 SIHGYLGIVELLVSLGAD 139
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEA 155
+G+TPLHLA + V VL + +++ N +T LH A
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPH------------LHSILKATNYNGHTCLHLA 124
Query: 156 VSHGNVEVVKILTREDPD 173
HG + +V++L D
Sbjct: 125 SIHGYLGIVELLVSLGAD 142
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 18/78 (23%)
Query: 92 QVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTA 151
Q + G T LHLAA YS D + L+E + A + +N T
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADAN------------------IQDNMGRTP 93
Query: 152 LHEAVSHGNVEVVKILTR 169
LH AVS V +IL R
Sbjct: 94 LHAAVSADAQGVFQILIR 111
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 83 LEICPALLLQ------VNAKGDTPLHLAAKYSHFDIVRVLIERA 120
LEI LL V+A G TPLHLAA H +I VL++
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 59 NTILHINIICQETENASTKFVEEILE--------ICPALLLQ--VNAKGDTPLHLAAKYS 108
NT+LH ++ + ++ V + + +CP + L+ N +G TPL LAAK
Sbjct: 186 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 245
Query: 109 HFDIVRVLIER 119
+I R +++R
Sbjct: 246 KIEIFRHILQR 256
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 65 NIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLI 117
+++ + +N V+++LE + Q G TPLH A + S DIV +L+
Sbjct: 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 79
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 57 TKNTILHINIICQETENASTKFVEEILEICPALLLQVNAK---GDTPLHLAAKYSHFDIV 113
+ T LH+ A+ K E+L++ VN K G TPLH AA + +
Sbjct: 198 SGGTALHV---------AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248
Query: 114 RVLIE 118
R+L+E
Sbjct: 249 RILVE 253
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 59 NTILHINIICQETENASTKFV----EEIL----EICPALLLQ--VNAKGDTPLHLAAKYS 108
NT+LH + + +TKFV EIL ++ P L L+ N KG TPL LAA
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 109 HFDIVRVLIER 119
++ +++R
Sbjct: 245 KIGVLAYILQR 255
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 59 NTILHINIICQETENASTKFVEEILE--------ICPALLLQ--VNAKGDTPLHLAAKYS 108
NT+LH ++ + ++ V + + +CP + L+ N +G TPL LAAK
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232
Query: 109 HFDIVRVLIER 119
+I R +++R
Sbjct: 233 KIEIFRHILQR 243
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 90 LLQVNAKGDTPLHLAAKYSHFDIVRVLIERA 120
L Q N GDT LH AA + DIV++L+ +
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 145 NNEKNTALHEAVSHGNVEVVKILTR 169
N+E TALH AV G+ E+VK L +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ 91
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 66 IICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLI 117
++ + +N V+++LE + Q G TPLH A + S DIV +L+
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 145 NNEKNTALHEAVSHGNVEVVKILTR 169
N+E TALH AV G+ E+VK L +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ 91
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 89 LLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN 146
L + V+ G+TPLH ++ ++V+ L++ +GD ES + ++ VNN
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES---CLVKAVKSVNN 177
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 59 NTILHINIICQETENASTKFVEEILEI----CPALLLQVNAK------GDTPLHLAAKYS 108
NT+LH + + +TKFV ++ ++ C L N + G +PL +AAK
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236
Query: 109 HFDIVRVLIER 119
I + +I R
Sbjct: 237 KIGIFQHIIRR 247
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIE 118
+G+ PLHLAAK H +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIE 118
+G+ PLHLAAK H +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIE 118
+G+ PLHLAAK H +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 18/73 (24%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
G+ +H AA+ D ++ L+E F+ + + +NE N LH A
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLE------------------FQADVNIEDNEGNLPLHLAA 111
Query: 157 SHGNVEVVKILTR 169
G++ VV+ L +
Sbjct: 112 KEGHLRVVEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIE 118
+G+ PLHLAAK H +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIE 118
N +G+TPL +A+KY +IV+ L+E
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 59 NTILHINIICQETENASTKFVEEILEI----CPALLLQ------VNAKGDTPLHLAAKYS 108
NT+LH + + +TKFV ++ ++ C L +N G +PL +AAK
Sbjct: 175 NTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTG 234
Query: 109 HFDIVRVLIER 119
I + +I R
Sbjct: 235 KIGIFQHIIRR 245
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 96 KGDTPLHLAAKYSHFDIVRVLIE 118
+G+ PLHLAAK H +V L++
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 43 DMAREVIESSL--TVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTP 100
D R +IE+ + T+ + +++ C+ + K++ + E+ G P
Sbjct: 34 DEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV------HSLWHGQKP 87
Query: 101 LHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN--------EKNTAL 152
+HLA + D+V L+E A+ + G + PES + + R VN + TAL
Sbjct: 88 IHLAVXANKTDLVVALVEGAK--ERG-QXPESLLNECDE--REVNEIGSHVKHCKGQTAL 142
Query: 153 HEAVSHG--NVEVVKILTR 169
H V G +E +KIL +
Sbjct: 143 HWCVGLGPEYLEXIKILVQ 161
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 18/72 (25%)
Query: 100 PLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHG 159
PLH AA IV++L+ SG++ +++ NTAL+ AV G
Sbjct: 65 PLHQAATLEDTKIVKILLF-------------SGLDD-----SQFDDKGNTALYYAVDSG 106
Query: 160 NVEVVKILTRED 171
N + VK+ +++
Sbjct: 107 NXQTVKLFVKKN 118
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 97 GDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAV 156
GDTPLH+A + V L+ L Q G E + + NN + T LH AV
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVN---LFQQGGRE-----------LDIYNNLRQTPLHLAV 54
Query: 157 SHGNVEVVKIL 167
VV++L
Sbjct: 55 ITTLPSVVRLL 65
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
+A G +P+H AA+ D ++VL+E HG + + +++ + +H
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVE------HGAD------------VNALDSTGSLPIH 114
Query: 154 EAVSHGNVEVVKILTRE 170
A+ G+ VV L E
Sbjct: 115 LAIREGHSSVVSFLAPE 131
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
Query: 94 NAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALH 153
+A G +P+H AA+ D ++VL+E HG + + +++ + +H
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVE------HGAD------------VNALDSTGSLPIH 112
Query: 154 EAVSHGNVEVVKILTRE 170
A+ G+ VV L E
Sbjct: 113 LAIREGHSSVVSFLAPE 129
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 95 AKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
A G+T LH AA Y+ D +++L++ L +E E+ ++ R+
Sbjct: 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 26/144 (18%)
Query: 28 NLFKAAADGSVEPFKDMA-REVIESSLTVHTKNTILHINIICQETENASTKFVEEILEIC 86
L AAA G V+ + + RE++ T L + + ST E+L+
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF------GSTAIALELLKQG 58
Query: 87 PALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN 146
+ +Q + G +P+H AA+ D ++VL+E HG + + + +
Sbjct: 59 ASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVE------HGAD------------VNVPDG 99
Query: 147 EKNTALHEAVSHGNVEVVKILTRE 170
+H AV G+ VV L E
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAAE 123
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 26/144 (18%)
Query: 28 NLFKAAADGSVEPFKDMA-REVIESSLTVHTKNTILHINIICQETENASTKFVEEILEIC 86
L AAA G V+ + + RE++ T L + + ST E+L+
Sbjct: 11 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF------GSTAIALELLKQG 64
Query: 87 PALLLQVNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNN 146
+ +Q + G +P+H AA+ D ++VL+E HG + + + +
Sbjct: 65 ASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVE------HGAD------------VNVPDG 105
Query: 147 EKNTALHEAVSHGNVEVVKILTRE 170
+H AV G+ VV L E
Sbjct: 106 TGALPIHLAVQEGHTAVVSFLAAE 129
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 74 ASTKFVEE-ILEICPALLLQVNAKGDTPLHLAAKYSHFDIVRVLI-ERA-QL--AQHGDE 128
AS FV ++E ++L A+G A + DIV L ERA QL A+H +
Sbjct: 30 ASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGGCEYVDIVEELARERAKQLFGAEHANV 89
Query: 129 EPESGIEAFRQMIRMVNNEKNTALHEAVSHGN 160
+P SG +A + V +T L +SHG
Sbjct: 90 QPHSGAQANMAVYFTVLEHGDTVLGMNLSHGG 121
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 95 AKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQ 139
A G+T LH AA Y+ D +++L++ L +E E+ ++ R+
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 16/63 (25%)
Query: 28 NLFKAAADGSVEPFKDMAREVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICP 87
NL AADG+ E ++ +T TK +IC+E+ N S K +ILE P
Sbjct: 182 NLSNRAADGTAE---------LQVLVTDGTK-------VICKESRNVSLKQGADILEQLP 225
Query: 88 ALL 90
L+
Sbjct: 226 LLI 228
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 59 NTILH--INIICQETENAS--TKFVEEILE----ICPALLLQ--VNAKGDTPLHLAAKYS 108
NT+LH + I EN + T + +L+ +CP + L+ N + TPL LAAK
Sbjct: 178 NTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEG 237
Query: 109 HFDIVRVLIER 119
+I R +++R
Sbjct: 238 KIEIFRHILQR 248
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 93 VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
V GDT LHLA + H + L+ G A + + + N+ TAL
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLL---------------GFSAGHEYLDLQNDLGQTAL 49
Query: 153 HEAVSHGNVEVVKIL 167
H A G V+ L
Sbjct: 50 HLAAILGEASTVEKL 64
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 93 VNAKGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTAL 152
V GDT LHLA + H + L+ G A + + + N+ TAL
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLL---------------GFSAGHEYLDLQNDLGQTAL 49
Query: 153 HEAVSHGNVEVVKIL 167
H A G V+ L
Sbjct: 50 HLAAILGEASTVEKL 64
>pdb|1UX1|A Chain A, Bacillus Subtilis Cytidine Deaminase With A Cys53his And
An Arg56gln Substitution
pdb|1UX1|B Chain B, Bacillus Subtilis Cytidine Deaminase With A Cys53his And
An Arg56gln Substitution
pdb|1UX1|C Chain C, Bacillus Subtilis Cytidine Deaminase With A Cys53his And
An Arg56gln Substitution
pdb|1UX1|D Chain D, Bacillus Subtilis Cytidine Deaminase With A Cys53his And
An Arg56gln Substitution
Length = 136
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 105 AKYSHFDIVRVLIERAQLAQHGDEEPESGIEAFRQMIRMVNNEKNTALHEAVSHGNVEVV 164
A YS F + L+ + D + G M N+ + TAL +AVS G+ E
Sbjct: 19 APYSKFQVGAALLTK-------DGKVYRGCNIENAAYSMCNHAEQTALFKAVSEGDTEFQ 71
Query: 165 KILTREDPDYPYS 177
+ D P S
Sbjct: 72 MLAVAADTPGPVS 84
>pdb|1K1X|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1X|B Chain B, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1Y|A Chain A, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
pdb|1K1Y|B Chain B, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
Length = 659
Score = 26.6 bits (57), Expect = 7.8, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 47 EVIESSLTVHTKNTILHINIICQETENASTKFVEEILEICPALLLQVNAKGDTPLHLAA- 105
E I +H + + + +E N S + EILE P + + V+ G +
Sbjct: 2 ERINFIFGIHNHQPLGNFGWVFEEAYNRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEEN 61
Query: 106 KYSHFDIVRVLIERAQL 122
K + D++R LI+R QL
Sbjct: 62 KPDYLDLLRSLIKRGQL 78
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 98 DTPLHLAAKYSHFDIVRVLIERAQLAQHGDEE-PESGIEAFRQM 140
D+P+ + +Y FD +++ R + DEE P G +AF +M
Sbjct: 260 DSPMAINCEYGSFDNEHLVLPRTKYDVIIDEESPRPGQQAFEKM 303
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 86 CPALLLQVNA--------KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
C LL + A G T LH+AA Y ++V L+E + DE + +E
Sbjct: 92 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Query: 138 RQMIR 142
R++++
Sbjct: 152 REILK 156
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 86 CPALLLQVNA--------KGDTPLHLAAKYSHFDIVRVLIERAQLAQHGDEEPESGIEAF 137
C LL + A G T LH+AA Y ++V L+E + DE + +E
Sbjct: 91 CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Query: 138 RQMIR 142
R++++
Sbjct: 151 REILK 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,009,481
Number of Sequences: 62578
Number of extensions: 178820
Number of successful extensions: 769
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 261
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)