BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041786
(260 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
Length = 422
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 167/360 (46%), Positives = 205/360 (56%), Gaps = 104/360 (28%)
Query: 5 AAAKTSKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISEL------------------ 46
+ +++ YF+ +++I NI+R ++Y ERTLN+LNL + SEL
Sbjct: 1 STTTNNRDAYFSLIHNITNIIRKEVYPERTLNKLNLPITSELVFRVLRACSNSPSESLRF 60
Query: 47 -----------------------------SMWKTIELMK---PDSLSVFPQTLSLIIEEF 74
SMWK I +K D SV T+ IIEE+
Sbjct: 61 FNWARSYYSPTTIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVCSIIEEY 120
Query: 75 GKHGLIDNAVEVFNKCT-AFNCQQCVLLYNSL--HVCFV-----------RMIRKGFVPD 120
GKHGLID AVEVFNKC+ + NCQ V +YNSL +C V RMIRKG VPD
Sbjct: 121 GKHGLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRMIRKGIVPD 180
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVN 164
KRT+ +LVN WCSSGK+REA+ FL+E+S KGFNPPVR SAK MV
Sbjct: 181 KRTYGVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVR 240
Query: 165 KMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEF 211
+M+K+G VPD+ TFNS++E IC +GE LG C D+N+ KI IPAVSK
Sbjct: 241 RMMKEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHSVCKLGFCPDINSYKILIPAVSKVG 300
Query: 212 MIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
IDEAFRLL NL+EDGHK FPSL GQFDDAFCFFSEM++K HPPNRPVY
Sbjct: 301 RIDEAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKVKGHPPNRPVYT 360
>gi|449449535|ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Cucumis sativus]
gi|449518358|ref|XP_004166209.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Cucumis sativus]
Length = 455
Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 200/361 (55%), Gaps = 105/361 (29%)
Query: 5 AAAKTSKEDYFAAVNHIANIVRHDIYAERTLNRLNLT-LISEL----------------- 46
+ SK+DYFAA++HI++IVR D Y ERTLN+L ++ L SEL
Sbjct: 32 GSTAPSKDDYFAAIHHISHIVRRDFYMERTLNKLRISNLNSELVFRVLRACSNSGTESFR 91
Query: 47 ---------------------------------SMWKTIELMKPDSLSVFPQTLSLIIEE 73
+MWK + MK +L + P+T+S II+E
Sbjct: 92 FFNWACSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMKTQNLKISPETISFIIQE 151
Query: 74 FGKHGLIDNAVEVFNKCT-AFNCQQCVLLYNSL-------------HVCFVRMIRKGFVP 119
+GK GL+DNAV +FN+C+ + +C Q V +YN+L + RMIRKG P
Sbjct: 152 YGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTP 211
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMV 163
DK+T+ LV WCS+GKM+EAQEFL+E+S KGFNPP+R SAK MV
Sbjct: 212 DKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMV 271
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKE 210
KM K+GSVPD+ TFNSLI+ IC SGE LGLC D+NT KI IPA SK
Sbjct: 272 RKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKV 331
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
IDEAFRLL +EDGH FPSL GQFDDAFCFF +M+ K HPPNRPVY
Sbjct: 332 GRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAFCFFGDMKHKGHPPNRPVY 391
Query: 260 A 260
Sbjct: 392 T 392
>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 451
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 195/358 (54%), Gaps = 102/358 (28%)
Query: 5 AAAKTSKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISEL------------------ 46
+ +K+ YFA ++HI NIVR D Y ERTLN+LN + SEL
Sbjct: 31 TSTNNTKDAYFALIHHITNIVRRDFYPERTLNKLNAPVTSELVFRVLRACSRSPTESLRF 90
Query: 47 -----------------------------SMWKTIELMKPDS--LSVFPQTLSLIIEEFG 75
SMWK I MK + S+ +T+ IIEE+G
Sbjct: 91 FNWSRAYYTPTSIEYEELIKILAKSKRYSSMWKLITQMKDQNPQFSISSETVRSIIEEYG 150
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKR 122
+ GLID AVEVFN+C + NC+Q V +YNSL + R+IRKG P+K
Sbjct: 151 RSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKT 210
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNKM 166
T+++LVN WCS+GK +EAQ FL+E+S KGFNPPVR SAK+MV KM
Sbjct: 211 TYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKM 270
Query: 167 IKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMI 213
K+G VPD+ TFN LIE IC SGE LG C D+N+ KI IPAVSK I
Sbjct: 271 SKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDINSYKILIPAVSKVGKI 330
Query: 214 DEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
DEAF+LL N +EDGHK FP L GQFDDAFCFF EM++K HPPNRPVY
Sbjct: 331 DEAFKLLNNSIEDGHKPFPGLYAPIIKGMCRRGQFDDAFCFFGEMKVKGHPPNRPVYT 388
>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g18390, mitochondrial; Flags: Precursor
gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 459
Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 192/353 (54%), Gaps = 103/353 (29%)
Query: 10 SKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISEL----------------------- 46
+K DYFAA+NH+ NIVR +I+ ER+LN L L + SE
Sbjct: 43 TKGDYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFRVLRATSRSSNDSLRFFNWAR 102
Query: 47 --------------------------SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
SMWK ++ MK SL + +TL IIE++GK+G +
Sbjct: 103 SNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHV 162
Query: 81 DNAVEVFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTI 126
D AVE+FN CQQ V +YNSL + RMIRKG PDKRT+ I
Sbjct: 163 DQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAI 222
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNKMIKQG 170
LVN WCS+GKM+EAQEFL E+S +GFNPP R SAK+MV+KM K G
Sbjct: 223 LVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGG 282
Query: 171 SVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAF 217
VPD++TFN LIE I KSGE LGLC D++T K IPAVSK IDEAF
Sbjct: 283 FVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAF 342
Query: 218 RLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
RLL N VEDGHK FPSL G FDDAF FFS+M++K HPPNRPVY
Sbjct: 343 RLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVY 395
>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 459
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 192/353 (54%), Gaps = 103/353 (29%)
Query: 10 SKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISEL----------------------- 46
+K DYFAA+NH+ NIVR +I+ ER+LN L L + SE
Sbjct: 43 TKGDYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFRVLRATSRSANDSLRFFNWAR 102
Query: 47 --------------------------SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
SMWK ++ MK SL + +TL IIE++GK+G +
Sbjct: 103 SNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHV 162
Query: 81 DNAVEVFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTI 126
D AVE+FN CQQ V +YN+L + RMIRKG PDKRT+ I
Sbjct: 163 DQAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAI 222
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNKMIKQG 170
LVN WCS+GKM+EAQEFL E+S KGFNPP R SAK++V+KM K G
Sbjct: 223 LVNGWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGG 282
Query: 171 SVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAF 217
VPD+ TFN+LIE I KSGE LGLC D++T K IPAVSK IDEAF
Sbjct: 283 FVPDILTFNTLIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAF 342
Query: 218 RLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
RLL N VEDGHK FPSL G FDDAF FFS+M++K HPPNRPVY
Sbjct: 343 RLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVY 395
>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial [Vitis vinifera]
gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
Length = 454
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 196/354 (55%), Gaps = 107/354 (30%)
Query: 9 TSKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISEL---------------------- 46
+ K+DYFA V+HI+ IVR D Y ERTLN+L +++ S+L
Sbjct: 41 SKKDDYFAVVHHISAIVRRDFYLERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWA 100
Query: 47 ---------------------------SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGL 79
MWK M+ ++ P +S IIEEFGKHGL
Sbjct: 101 RSHLSYQPTTLEYEELLKTLARTKQFQPMWKIAHQMQ----TLSPTVVSSIIEEFGKHGL 156
Query: 80 IDNAVEVFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHT 125
+D AVEVFNK +A NC Q + +YNSL + RMIRKG P+K+T++
Sbjct: 157 VDQAVEVFNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYS 216
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNKMIKQ 169
+LVN WC++GKM+EAQ+FL+E+S KGFNPPVR +AK+MV KM K+
Sbjct: 217 VLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKE 276
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ET NS++E ICK+GE LG+ +V T KI IPA KE IDEA
Sbjct: 277 GCAPDVETLNSMLEAICKAGEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEA 336
Query: 217 FRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
FR+L +EDGH+ FPSL GQFDDAFCFFS+M++K HPPNRPVY
Sbjct: 337 FRILHRSIEDGHRPFPSLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVY 390
>gi|356510681|ref|XP_003524064.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Glycine max]
Length = 450
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 196/360 (54%), Gaps = 103/360 (28%)
Query: 3 TVAAAKTSKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISEL---------------- 46
T+ A +S+++YFA ++H++NIVR D Y ERTLN+L +T+ EL
Sbjct: 27 TLTTASSSRDEYFAVIHHVSNIVRRDFYLERTLNKLRITVTPELVFRVLRACSNNPTESL 86
Query: 47 ---------------------------------SMWKTI-ELMKPDSLSVFPQTLSLIIE 72
SMW I ++ LS+ P ++ +IE
Sbjct: 87 RFFNWARTHPSYSPTSLEFEQIVTTLARANTYQSMWALIRQVTLHHRLSLSPSAVASVIE 146
Query: 73 EFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSL----------HVCFV---RMIRKGFV 118
+G + +D +V+VFNK NC Q + LYN+L H + RM+RKG
Sbjct: 147 AYGDNRHVDQSVQVFNKSPLLLNCPQTLPLYNALLRSLCHNKLFHGAYALVRRMLRKGLR 206
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQM 162
PDK T+ +LVNAWCS+GK+REA+ FL+E+S+KGFNPPVR SAK M
Sbjct: 207 PDKTTYAVLVNAWCSNGKLREAKLFLEEMSEKGFNPPVRGRDLLVEGLLNAGYVESAKGM 266
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSG------------ELGLCADVNTNKISIPAVSKE 210
V MIKQGSVPD+ TFN+++ET+ K LG+ DVNT KI +PAVSK
Sbjct: 267 VRNMIKQGSVPDVGTFNAVVETVSKEDVQFCVGLYHEVCALGMAPDVNTYKILVPAVSKS 326
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
M+DEAFRLL N +EDGHK FPSL GQFDDAFCFF +M+ K HPPNRP+Y
Sbjct: 327 GMVDEAFRLLNNFIEDGHKPFPSLYAPVIKALCRRGQFDDAFCFFGDMKAKAHPPNRPLY 386
>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
Length = 465
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 175/356 (49%), Gaps = 105/356 (29%)
Query: 9 TSKEDYFAAVNHIANIVRHDIYAERTLNR----------LNLTLISELS----------- 47
TSK+ YFAAV+H++ +VR D Y ERTLNR L L +I +
Sbjct: 46 TSKDAYFAAVHHLSTVVRRDFYLERTLNRLRLPSPFPPDLALRVIRAAAPAEPLHAARFL 105
Query: 48 -------------------------------MWKTIELMKPDSLSVFPQTLSLIIEEFGK 76
+W M+ L + P T S +I +G+
Sbjct: 106 AWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQ 165
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRT 123
L D AVEVFN+ F C Q +YN+L + RM RKG PD+ T
Sbjct: 166 SRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMARKGVAPDRAT 225
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMI 167
+ LV+AWC++GK+REAQ FL +++++GF+PPVR AK +M
Sbjct: 226 FSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMT 285
Query: 168 KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
K+G +PD+ TFNSL E +C SG++ GLC D++T K+ IPAV+K ID
Sbjct: 286 KEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRID 345
Query: 215 EAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
EAFRL +EDGH+ FPSL G+F DAF FF +M+ K HPPNRPVY
Sbjct: 346 EAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVY 401
>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
Length = 461
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 175/356 (49%), Gaps = 105/356 (29%)
Query: 9 TSKEDYFAAVNHIANIVRHDIYAERTLNR----------LNLTLISELS----------- 47
TSK+ YFAAV+H++ +VR D Y ERTLNR L L +I +
Sbjct: 42 TSKDAYFAAVHHLSTVVRRDFYLERTLNRLRLPSPFPPDLALRVIRAAAPAEPLHAARFL 101
Query: 48 -------------------------------MWKTIELMKPDSLSVFPQTLSLIIEEFGK 76
+W M+ L + P T S +I +G+
Sbjct: 102 AWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQ 161
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRT 123
L D AVEVFN+ F C Q +YN+L + RM RKG PD+ T
Sbjct: 162 SRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMARKGVAPDRAT 221
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMI 167
+ LV+AWC++GK+REAQ FL +++++GF+PPVR AK +M
Sbjct: 222 FSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMT 281
Query: 168 KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
K+G +PD+ TFNSL E +C SG++ GLC D++T K+ IPAV+K ID
Sbjct: 282 KEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRID 341
Query: 215 EAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
EAFRL +EDGH+ FPSL G+F DAF FF +M+ K HPPNRPVY
Sbjct: 342 EAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVY 397
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 172/356 (48%), Gaps = 105/356 (29%)
Query: 9 TSKEDYFAAVNHIANIVRHDIYAERTLNR----------LNLTLISELS----------- 47
TSK+ YFAAVNH++ IVR D Y ERTLNR L L +I +
Sbjct: 40 TSKDAYFAAVNHLSTIVRRDFYLERTLNRLRLPSPFPPDLALRVIRAAAPSEPLHAARFL 99
Query: 48 -------------------------------MWKTIELMKPDSLSVFPQTLSLIIEEFGK 76
+W M+ L + P T S +I +G
Sbjct: 100 AWIRAKPNFSPSADHFDALLLPLARARLFTHLWTQASDMRALGLPLSPATFSAVISSYGH 159
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRT 123
L + AVEVFN+ F C Q +YN+L + RM RKG PD+ T
Sbjct: 160 SRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANGNFAGAYKLLRRMARKGVAPDRAT 219
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMI 167
+ LV+AWC+SGK+REAQ FL +++ +GF PPVR AK ++
Sbjct: 220 FSTLVDAWCASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGLVRAGRLEEAKAFALRIT 279
Query: 168 KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
K+G +PD+ TFNSL + +C +G++ G+C D++T K+ +PAV+K I+
Sbjct: 280 KEGVLPDVATFNSLAQALCDAGDVEFAVGLLADASSRGMCPDISTYKVMLPAVAKAGRIE 339
Query: 215 EAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
EAFRL +EDGH+ FPSL G+F DAF FF +M+ K HPPNRPVY
Sbjct: 340 EAFRLFYAAIEDGHRPFPSLYAAIVKALCKAGRFADAFAFFGDMKSKGHPPNRPVY 395
>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Brachypodium distachyon]
Length = 464
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 172/355 (48%), Gaps = 105/355 (29%)
Query: 10 SKEDYFAAVNHIANIVRHDIYAERTLNR----------LNLTLISELS------------ 47
SK+ YFAAV+H++ IVR D Y ERTLNR L L +I +
Sbjct: 46 SKDAYFAAVHHLSTIVRRDFYLERTLNRLRLPSPFPPDLALRVIKAAAPAEPLHAARFLA 105
Query: 48 ------------------------------MWKTIELMKPDSLSVFPQTLSLIIEEFGKH 77
+W M+ L + P T S +I +G
Sbjct: 106 WLRAKPNFSPSAEHFDALLLPLARARLFTHLWTQASDMRALGLPLSPATFSAVISSYGHS 165
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTH 124
L + AVEVFN+ F C Q +YN+L + RM RKG PD+ T
Sbjct: 166 RLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSNGNFAGAYKLLRRMARKGVAPDRATF 225
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI----------------K 168
+ LV+AWC+SGK+REAQ FL +++ +GF PPVR +V+ ++ K
Sbjct: 226 STLVDAWCASGKLREAQAFLDDMASRGFRPPVRGRDLLVDGLVRAGRLEEAKAFAVRFTK 285
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G +PD+ TFNSL + +C +G++ GLC D++T K+ +PAV+K I+E
Sbjct: 286 EGVLPDVATFNSLAQALCDAGDVKFAVGLLADASSRGLCPDISTYKVMLPAVAKAGQIEE 345
Query: 216 AFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
AFRL VEDGH+ FPSL G+F DAF FF +M+ K HPPNRPVY
Sbjct: 346 AFRLFYAAVEDGHRPFPSLYAAIVKALCKAGRFGDAFAFFGDMKSKGHPPNRPVY 400
>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
Length = 456
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/356 (35%), Positives = 171/356 (48%), Gaps = 105/356 (29%)
Query: 9 TSKEDYFAAVNHIANIVRHDIYAERTLN--RLNLTLISELSM------------------ 48
TSK+ YFAAV+H++ IVR D Y ERTLN RL ++L++
Sbjct: 37 TSKDAYFAAVHHLSTIVRRDFYLERTLNRLRLPSPFPTDLALRVIRAAAPAAPLHATRFL 96
Query: 49 --------------------------------WKTIELMKPDSLSVFPQTLSLIIEEFGK 76
W M+ L + P T S +I +G
Sbjct: 97 SWLRAKPSFAASAEHFDALLLPLARARLFPHLWSLASDMRGLGLPLSPTTFSAVISSYGH 156
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRT 123
L D AVEVFN+ F C Q +YN+L + RM RKG PD+ T
Sbjct: 157 SRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGAYKLLRRMARKGVAPDRAT 216
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMI 167
+ LV++WC++GK++EAQ FL +++ +G PPVR AK +M
Sbjct: 217 FSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDGLVRAGHLEQAKAFALRMT 276
Query: 168 KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
K+G +PD+ TFNSL E +C +G++ GLC D++T K+ +PAV+K I+
Sbjct: 277 KEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIE 336
Query: 215 EAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
EAFRL VEDGH+ FPSL G+F DAF FF +M+ K HPPNRPVY
Sbjct: 337 EAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKTKGHPPNRPVY 392
>gi|147857907|emb|CAN80394.1| hypothetical protein VITISV_001596 [Vitis vinifera]
Length = 356
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 160/319 (50%), Gaps = 106/319 (33%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLISEL---------------------------- 46
FA V+HI+ IVR D Y ERTLN+L +++ S+L
Sbjct: 4 FAVVHHISAIVRRDFYLERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHXSY 63
Query: 47 ---------------------SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVE 85
MWK M+ ++ P +S IIEEFGKHGL+D AVE
Sbjct: 64 QPTTLEYEELLKTLARTKQFQPMWKIAHQMQ----TLSPTVVSSIIEEFGKHGLVDQAVE 119
Query: 86 VFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAW 131
VFNK +A NC Q + +YNSL + RMIRKG P+K+T+++LVN W
Sbjct: 120 VFNKAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGW 179
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
C++GKM+EAQ+FL+E+S KGFNPPVR +V+ ++ G LE ++
Sbjct: 180 CAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGY---LEAAKEML--------- 227
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDA 240
+K + FR+L +EDGH+ FPSL GQFDDA
Sbjct: 228 ----------------AKRVELMRPFRILHRSIEDGHRPFPSLYAPIIKALCRNGQFDDA 271
Query: 241 FCFFSEMQIKTHPPNRPVY 259
FCFFS+M++K HPPNRPVY
Sbjct: 272 FCFFSDMKVKGHPPNRPVY 290
>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
gi|223943533|gb|ACN25850.1| unknown [Zea mays]
Length = 322
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 140/258 (54%), Gaps = 53/258 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
M+ L + P T S +I +G L D AVEVFN+ F C Q +YN+L
Sbjct: 1 MRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGN 60
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
+ RM RKG PD+ T + LV++WC++GK++EAQ FL +++ +G PPVR
Sbjct: 61 FTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDL 120
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
AK +M K+G +PD+ TFNSL E +C +G++ G
Sbjct: 121 LVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRG 180
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAF 241
LC D++T K+ +PAV+K I+EAFRL VEDGH+ FPSL G+F DAF
Sbjct: 181 LCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAF 240
Query: 242 CFFSEMQIKTHPPNRPVY 259
FF +M+ K HPPNRPVY
Sbjct: 241 AFFGDMKTKGHPPNRPVY 258
>gi|356528050|ref|XP_003532618.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g18390, mitochondrial-like [Glycine max]
Length = 304
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 116/178 (65%), Gaps = 33/178 (18%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
LH + + RKG PDK T+ +L+NAWCS+GK+REA+ FL+E+S+K +MV
Sbjct: 73 LHGTYALVRRKGLCPDKTTYALLINAWCSNGKLREAKLFLREMSEK----------EMVR 122
Query: 165 KMIKQGSVPDLETFNSLIETICKSG------------ELGLCADVNTNKISIPAVSKEFM 212
MIKQGSVPD+ TFN+++ET+ K LG+ DVNT KI +P VSK+ M
Sbjct: 123 SMIKQGSVPDVGTFNAVVETVSKENVQFCVDLYHEVCALGMAPDVNTYKILVPTVSKDGM 182
Query: 213 IDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
IDEAFRLL N V+DGHK FPSL GQFDDAFCFF +M+ K HPPNRP+Y
Sbjct: 183 IDEAFRLLNNFVDDGHKPFPSLYAPVIKALCSRGQFDDAFCFFGDMKAKAHPPNRPLY 240
>gi|242082131|ref|XP_002445834.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
gi|241942184|gb|EES15329.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
Length = 426
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 152/336 (45%), Gaps = 97/336 (28%)
Query: 9 TSKEDYFAAVNHIANIVRHDIYAERTLN--RLNLTLISELSM------------------ 48
TSK+ YFAAV+H++ IVR D Y ERTLN RL +L++
Sbjct: 39 TSKDAYFAAVHHLSTIVRRDFYLERTLNRLRLPSPFPPDLALRVIRAAAPAAPLHATRFL 98
Query: 49 --------------------------------WKTIELMKPDSLSVFPQTLSLIIEEFGK 76
W M+ L + P T S +I +G
Sbjct: 99 AWLRAKPSFTASAEHFDALLLPLARARLFPHLWSLASDMRGLGLPLSPTTFSAVISSYGH 158
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRT 123
L D AVEVFN+ F C Q +YN+L + RM RKG PD+ T
Sbjct: 159 SRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGAYKLLRRMARKGVAPDRAT 218
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMI 167
+ LV++WC++GK+ EAQ FL +++ +GF PPVR AK +M
Sbjct: 219 FSTLVDSWCAAGKLNEAQAFLDDMASRGFRPPVRGRDLLVDGLVRAGHLEEAKAFALRMT 278
Query: 168 KQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
K+G +PD+ TFNSL E +C +G+ + L AD ++ + P +S + + LC
Sbjct: 279 KEGILPDVATFNSLAEALCNAGDVDFAVALLADASSRGL-CPDISHTSLYAAIIKALCK- 336
Query: 224 VEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G+F DAF FF +M++K HPPNRPVY
Sbjct: 337 ----------AGRFADAFAFFGDMKMKGHPPNRPVY 362
>gi|13899129|gb|AAK48986.1|AF370559_1 Unknown protein [Arabidopsis thaliana]
gi|27311979|gb|AAO00955.1| Unknown protein [Arabidopsis thaliana]
Length = 186
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 79/122 (64%), Gaps = 24/122 (19%)
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVS 208
MV+KM K G VPD++TFN LIE I KSGE LGLC D++T K IPAVS
Sbjct: 1 MVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVS 60
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRP 257
K IDEAFRLL N VEDGHK FPSL G FDDAF FFS+M++K HPPNRP
Sbjct: 61 KIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRP 120
Query: 258 VY 259
VY
Sbjct: 121 VY 122
>gi|115477391|ref|NP_001062291.1| Os08g0525500 [Oryza sativa Japonica Group]
gi|42761404|dbj|BAD11569.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624260|dbj|BAF24205.1| Os08g0525500 [Oryza sativa Japonica Group]
Length = 182
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 72/118 (61%), Gaps = 24/118 (20%)
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
M K+G +PD+ TFNSL E +C SG++ GLC D++T K+ IPAV+K
Sbjct: 1 MTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGR 60
Query: 213 IDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
IDEAFRL +EDGH+ FPSL G+F DAF FF +M+ K HPPNRPVY
Sbjct: 61 IDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVY 118
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 44/217 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
I+ ++G+ G + AV VF + ++C+ V YN++ H ++RM G
Sbjct: 82 IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--FNPPVR--------------SAK 160
PD THTI + ++C +G+ A L + +G FN A
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAY 201
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ ++M+KQG PD+ TFN LI +CK G + G+C ++ T I I +
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFF 244
++ IDEA RLL ++V +G L P + ++ C F
Sbjct: 262 CRKGAIDEAARLLESIVSEG--LTPDVISYNTLICGF 296
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 29/142 (20%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KGF+PD+ T++ L+N C+ G M A E +KGF V
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQ 409
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A Q++ M++ G PD+ T+N ++ +CK G L G D+ T I
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLID 469
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
K+ +D+A +L ++ G
Sbjct: 470 GYCKQRNMDKAIEILDTMLSHG 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 46/218 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKG 116
+++ K GL+ A+++ C + YN + +M I KG
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------ 164
+PD T L++ +C M +A E L + G P V + ++N
Sbjct: 457 CIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVV 516
Query: 165 ----KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
M+++G P++ T+N LIE+ CK ++ GL D+ T I +
Sbjct: 517 DTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGL 576
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
+D+A+ L +E +K S F+ +AFC
Sbjct: 577 CSNGELDKAYELFVT-IEKEYKFSYSTAIFNIMINAFC 613
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T ++ I+ + G ID A + + V+ YN+L F + M
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G P++ T+ ++N +C +G M+ A + L++ KGF P + ++N + G +
Sbjct: 313 VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDM 372
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
N + ++ E G + + +SK+ ++ +A +L+ +++E G
Sbjct: 373 ------NRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 32/139 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T + +I+ + K +D A+E+ + + V+ YN+L +C R M
Sbjct: 463 TFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAM 522
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG P+ T+ IL+ ++C K+ EA E +E+ +G
Sbjct: 523 LEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL-------------------T 563
Query: 173 PDLETFNSLIETICKSGEL 191
PD+ T +LI +C +GEL
Sbjct: 564 PDIVTLCTLICGLCSNGEL 582
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
N F + KGF + LV G + +A + ++++ + G +P +
Sbjct: 373 NRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLV 432
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A ++N I +G +PD+ TFN+LI+ CK
Sbjct: 433 VNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 44/217 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
I+ ++G+ G + AV VF + ++C+ V YN++ H ++RM G
Sbjct: 82 IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--FNPPVR--------------SAK 160
PD THTI + ++C +G+ A L + +G FN A
Sbjct: 142 IYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAY 201
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ ++M+KQG PD+ TFN LI +CK G + G+C ++ T I I +
Sbjct: 202 HLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGL 261
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFF 244
++ IDEA RLL ++V +G L P + ++ C F
Sbjct: 262 CRKGAIDEAARLLESIVSEG--LTPDVISYNTLICGF 296
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 29/142 (20%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KGF+PD+ T++ L+N C+ G M A E +KGF V
Sbjct: 350 KGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQ 409
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A Q++ M++ G PD+ T+N ++ +CK G L G D+ T I
Sbjct: 410 ALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLID 469
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
K+ +D+A +L ++ G
Sbjct: 470 GYCKQRNMDKAIEILDTMLSHG 491
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 46/218 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKG 116
+++ K GL+ A+++ C + YN + +M I KG
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------ 164
+PD T L++ +C M +A E L + G P V + ++N
Sbjct: 457 CIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVV 516
Query: 165 ----KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
M+++G P++ T+N LIE+ CK ++ GL D+ T I +
Sbjct: 517 DTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGL 576
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
+D+A+ L +E +K S F+ +AFC
Sbjct: 577 CSNGELDKAYELFVT-IEKEYKFSYSTAIFNIMINAFC 613
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T ++ I+ + G ID A + + V+ YN+L F + M
Sbjct: 253 TFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G P++ T+ ++N +C +G M+ A + L++ KGF P + ++N + G +
Sbjct: 313 VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDM 372
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
N + ++ E G + + +SK+ ++ +A +L+ +++E G
Sbjct: 373 ------NRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 32/139 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T + +I+ + K +D A+E+ + + V+ YN+L +C R M
Sbjct: 463 TFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAM 522
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG P+ T+ IL+ ++C K+ EA E +E+ +G
Sbjct: 523 LEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL-------------------T 563
Query: 173 PDLETFNSLIETICKSGEL 191
PD+ T +LI +C +GEL
Sbjct: 564 PDIVTLCTLICGLCSNGEL 582
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
N F + KGF + LV G + +A + ++++ + G +P +
Sbjct: 373 NRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLV 432
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A ++N I +G +PD+ TFN+LI+ CK
Sbjct: 433 VNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 44/214 (20%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV+VF + +NC+ VL YN++ H F+RM G
Sbjct: 83 MKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGI 142
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG---------------FNPPVR-SAKQ 161
VPD T TI + ++C + + A L + +G + R A +
Sbjct: 143 VPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYE 202
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
+ N M++ G PD+ TFN L+ T+CK GE+ G+C+++ T I I +
Sbjct: 203 LFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLC 262
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
++ M+ A +L +++ +G L P + ++ C
Sbjct: 263 RKGMLSGAMSMLDSVIREG--LTPDVVTYNTLIC 294
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IR 114
+++I+ + GLI A+++ N+ + C + YN + +M I
Sbjct: 395 NMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIA 454
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---------- 164
KG+VPD T L++ +C KM + L ++ G P V + ++N
Sbjct: 455 KGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNED 514
Query: 165 ------KMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
M+++G VP+ T+N L E++CK+G++ D+
Sbjct: 515 LMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDL 553
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 45/215 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-------------LHVCFVRM 112
T + +I+ + K ++ +++ NK + V+ YNS L F M
Sbjct: 463 TFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETM 522
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ KG VP+K T+ IL + C +GK+ EA + + E+ +KG P +
Sbjct: 523 VEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDL 582
Query: 157 RSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGEL------------GLCA-DVNTNKI 202
+ A Q+ +M +Q V T+N +I + +L G CA D T ++
Sbjct: 583 KGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRV 642
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
I D ++ L ++E G PSL F
Sbjct: 643 MIDGFCITGNTDSGYKFLLEMIEKG--FIPSLTTF 675
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 96/237 (40%), Gaps = 49/237 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV--------------R 111
T ++ I+ + G++ A+ + + V+ YN+L +C + +
Sbjct: 253 TFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTL-ICGLCKNSNVVEAEKYLHK 311
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
++ G PD T+ L++ +C G ++ A++ LQ KGF P
Sbjct: 312 LVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDE 371
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
+ A + N + +G P + +N LI+ +C+ G E G +D+ T +
Sbjct: 372 IDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNL 431
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQIKTHPPNR 256
I + K + +A L+ + + G+ P + F+ D +C +M+ N+
Sbjct: 432 VINGLCKMGCVSDANNLMNDAIAKGY--VPDVFTFNTLIDGYCKQLKMETTIQILNK 486
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCT-AFNCQQCVLLYN----------SLHV 107
+ P T+S II F +G + A ++F + + YN LH+
Sbjct: 561 GITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHM 620
Query: 108 ---CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
F+ M G PD T+ ++++ +C +G +FL E+ +KGF P + + +++N
Sbjct: 621 GEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVIN 680
Query: 165 KMIKQGSV 172
+ Q V
Sbjct: 681 CLCVQHRV 688
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 51/213 (23%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+ WK +E +K ++ + P T S++I + K G+ + AVE F K F C+ V YNS L
Sbjct: 114 TYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSIL 173
Query: 106 HV------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
HV + +M++ + P++ T IL+N C +GK +A + E++ KG
Sbjct: 174 HVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIP 233
Query: 154 P----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P +++N M G PD T N+L++ CK G+
Sbjct: 234 PNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQ------- 286
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
IDEAF LL ++G+ L
Sbjct: 287 ---------------IDEAFALLQLFEKEGYVL 304
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 73/245 (29%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG--------- 116
+++I F + G++D A+ + N T YN+L C V ++ K
Sbjct: 345 TILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISK 404
Query: 117 --FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
P T+TIL+ C +G + E A+Q+ N+M G P
Sbjct: 405 NDCFPTSCTYTILICGMCRNGLLDE-------------------ARQIFNQMENLGCSPS 445
Query: 175 LETFNSLIETICKSGEL--------------------------GLCADVNTNKISIPAVS 208
+ TFN+LI+ +CK+GEL D + + + +
Sbjct: 446 IMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLC 505
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPN 255
+ +I +A++LL L + G + P + + + AF F E+Q+K H P+
Sbjct: 506 ESGLILKAYKLLMQLADSG--VVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPD 563
Query: 256 RPVYA 260
Y
Sbjct: 564 SVTYG 568
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
+++ G VPD T+ +L+N +C + + A + +EL KG +P
Sbjct: 517 LMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHR 576
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A +++++M+K G P + L+ C+ G+L +
Sbjct: 577 VDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSV 617
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 51/213 (23%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+ WK +E +K ++ + P T S++I + K G+ + AVE F K F C+ V YNS L
Sbjct: 114 TYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSIL 173
Query: 106 HV------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
HV + +M++ + P++ T IL+N C +GK +A + E++ KG
Sbjct: 174 HVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIP 233
Query: 154 P----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P +++N M G PD T N+L++ CK G+
Sbjct: 234 PNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQ------- 286
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
IDEAF LL ++G+ L
Sbjct: 287 ---------------IDEAFALLQLFEKEGYVL 304
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 38/140 (27%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
+++I F + G++D A+ + N M ++G PD + L
Sbjct: 345 TILIRGFCEVGMVDYALNMLND----------------------MTQRGLSPDTYCYNAL 382
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGS 171
+ +C G + +A+ E+S P + A+Q+ N+M G
Sbjct: 383 IKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGC 442
Query: 172 VPDLETFNSLIETICKSGEL 191
P + TFN+LI+ +CK+GEL
Sbjct: 443 SPSIMTFNALIDGLCKAGEL 462
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 49/157 (31%)
Query: 63 FPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120
FP T +++I ++GL+D A ++FN+ C ++ +N+
Sbjct: 408 FPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNA---------------- 451
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------------------ 156
L++ C +G++ EA+ ++ + G NP +
Sbjct: 452 ------LIDGLCKAGELEEARHLFYKM-EIGKNPSLFLRLSQGADRVMDTANGFHRVDRE 504
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A +++++M+K G P + L+ C+ G+L +
Sbjct: 505 EDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSV 541
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 49/245 (20%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV 110
E++K S S T + +++ F K G++ A+EV + N V+ Y L +C V
Sbjct: 226 EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV 285
Query: 111 -----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------- 150
++R+G++PD +T LV+ C SG++ EA + ++E+S +
Sbjct: 286 GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSI 345
Query: 151 GFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
PP + A +++ ++ +G VPD+ T+N+LI+ +CK+ +
Sbjct: 346 NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREA 405
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
D+ S+ + + LC +G+ DDA+ EM K H P
Sbjct: 406 CDLADEMASLGCFPNDVTLGSVVFGLCR-----------VGRVDDAWSLVVEMSRKRHAP 454
Query: 255 NRPVY 259
N VY
Sbjct: 455 NVVVY 459
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
++ +G+VPD T+ L++ C + ++REA + E++ G P
Sbjct: 377 LVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGR 436
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A +V +M ++ P++ + SLI+ +CKS +
Sbjct: 437 VDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 472
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 40/168 (23%)
Query: 50 KTIELMKP-DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+ +E ++ D SV P + I F HGL + N Q V L+ ++
Sbjct: 80 RALEFLRALDEFSVAPD---VYIFNFLIHGLFKDG----------NPDQAVKLFENMESS 126
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------- 152
V PD T+ +++ C SG + +A+E L+E+ +G
Sbjct: 127 RVN-------PDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAG 179
Query: 153 ---NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+ V A ++++ M G PD+ T+NS+I +C +G + A++
Sbjct: 180 ICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEI 227
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
++ G P+ T IL+ C +G+ A EFL+ L + P V +++ + K G+
Sbjct: 53 LLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGN 112
Query: 172 V----------------PDLETFNSLIETICKSGEL 191
PD+ T+N++I +CKSG L
Sbjct: 113 PDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNL 148
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 35/126 (27%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G PD T+ +++A C +G++ EA E L+ +S PDL
Sbjct: 200 GPAPDVITYNSIIHALCVAGRVVEAAEILKTMS----------------------CSPDL 237
Query: 176 ETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
TFN+L++ CK+G L + DV T I + + + + AF LL
Sbjct: 238 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 297
Query: 223 LVEDGH 228
+V G+
Sbjct: 298 IVRQGY 303
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 109/262 (41%), Gaps = 57/262 (21%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G + A VF+ T + + V+ +N+L ++R
Sbjct: 128 LECGYPASLYFF----NIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIR 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--- 155
M G PD T+++L+N C K+ EA E E+ D+G P
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVT 243
Query: 156 -------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V SA ++ +M+ QG PDL T+N+LI +CK G+L
Sbjct: 244 FTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMS 303
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFD 238
GL D T I KE ++ AF ++++ +L + +L G+ D
Sbjct: 304 MNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRAD 363
Query: 239 DAFCFFSEMQIKTHPPNRPVYA 260
DA F EM P+ Y
Sbjct: 364 DAEKMFREMLSVGLKPDNGTYT 385
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G++D+A+E++ + + ++ YN+L + M
Sbjct: 243 TFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-------LSDKGFNPPVRS------- 158
G PDK T+T L++ C G + A EF + L + + V
Sbjct: 303 SMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRA 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A++M +M+ G PD T+ +I CK G DV T A
Sbjct: 363 DDAEKMFREMLSVGLKPDNGTYTMIINEFCKKG------DVRT----------------A 400
Query: 217 FRLLCNLVEDGH 228
RLL + DGH
Sbjct: 401 SRLLKEMQRDGH 412
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM +KPD + T + +I+ K G ++ A E + + + +
Sbjct: 298 LIDEMSM----NGLKPDKI-----TYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVA 348
Query: 102 YNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L +C F M+ G PD T+T+++N +C G +R A L+E+
Sbjct: 349 YTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQ 408
Query: 149 DKGFNPPV 156
G P V
Sbjct: 409 RDGHVPCV 416
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 43/241 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ----------- 97
W I+LMK + + T S+++ + + GL AV FN+ + C+
Sbjct: 163 WHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISS 222
Query: 98 -CVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C S F ++ F PD +T LV+ WC +G + +A+E ++ + G P V
Sbjct: 223 LCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNV 282
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG----------- 189
+ A + ++MI G P+ TFNSL+ K+G
Sbjct: 283 YTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQ 342
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
LG AD + I + K+ +DEA ++L +V+ G + P+ F+ F +E+
Sbjct: 343 MKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKG--VAPNASTFNSIFGCIAEL 400
Query: 248 Q 248
Sbjct: 401 H 401
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + V+ +N+L ++R
Sbjct: 128 LECGYPTSLYFF----NILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIR 183
Query: 112 M--IRKGFV-----------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
+ + KGF PD T+T+L+N C KM EA E E+ DKG P
Sbjct: 184 LGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M++QG PDL T+N+LI +C+ G+L
Sbjct: 244 FTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMS 303
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE ++ AF L ++E+ +L
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRL 344
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I+ K G +D A+E++ + ++ YN+L +C V M
Sbjct: 243 TFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E + L D + +
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRA 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P+ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDV 397
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G ++ A E+ + + + +
Sbjct: 298 LIVEMSM----KGLKPDKI-----TYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVA 348
Query: 102 YNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L +C M+ G P+ T+T+++N +C G ++ A + L+E+
Sbjct: 349 YTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQ 408
Query: 149 DKGFNPPV 156
G P V
Sbjct: 409 RDGHVPCV 416
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 95/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ +N+L ++R
Sbjct: 128 LECGYPASLYFF----NILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIR 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM EA + E+ DKG P
Sbjct: 184 LGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V SA + +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 244 FTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMR 303
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF L +V++ +L
Sbjct: 304 MKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRL 344
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 37/165 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL----LYNSLHVCFVR---------- 111
T + +I+ K+G +D+A+E + + + QC L YN+L +
Sbjct: 243 TFTTLIDGHCKNGKVDSAMETYKQMLS----QCFLPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 112 ---MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS--- 158
M KG PDK T+T L++ C G + A E + L D + +
Sbjct: 299 LDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQ 358
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A++M+ +M+ G PD T+ +I CK ++ A +
Sbjct: 359 EGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKL 403
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G + A VF+ T ++ + V+ +N+L ++R
Sbjct: 128 LECGYPPSLYFF----NILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIR 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM EA E L E+ D G P
Sbjct: 184 LGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ QG +PDL T+N+LI +C+ G+LG D+
Sbjct: 244 FTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDL 298
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 37/159 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + ++ YN+L R M
Sbjct: 243 TFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR--------------- 157
I KG PDK T+T L++ C G + E EL + +R
Sbjct: 303 IMKGLKPDKITYTTLIDGSCKEGDL----EITFELRKRMIRENIRLDEVTYTALISGLCR 358
Query: 158 -----SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ ++ CK+G++
Sbjct: 359 EGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDV 397
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMIR+ D+ T+T L++ C G+ +A++ L+E+ G P + ++N+ K G
Sbjct: 336 RMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTG 395
Query: 171 SVPDLETFNSLIETICKSG 189
D++T + L+ + ++G
Sbjct: 396 ---DVKTASKLLREMQRNG 411
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 131 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 186
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M+ G +PD T+++L+N C KM +A E E+ KG
Sbjct: 187 LGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 246
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
N V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 247 FTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 306
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 307 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 347
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 246 TFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 305
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 306 SMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRS 365
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 366 VDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDV 400
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D A E + N + +
Sbjct: 301 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 351
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T+++N +C G + + + L+E+
Sbjct: 352 YAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 411
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 412 RNGHAPSVVTYNVLMN 427
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 45/214 (21%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
+ +G+ G I AV+VF + FNC+ V YN++ H ++RM KG
Sbjct: 83 MRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGI 142
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
VPD T TI + ++C + + A+ L + +G + A +
Sbjct: 143 VPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHE 202
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
+ +M+ G PD+ FN LI T+C+ G + G+ ++ T I I
Sbjct: 203 LFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFC 262
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
+ M++EA RLL + G L P + ++ C
Sbjct: 263 QRAMLNEAIRLLDGV---GRGLTPDVITYNTLIC 293
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 45/215 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I+ + K +DNA+E+ ++ V+ YNS+ +C F M
Sbjct: 462 TFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLM 521
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG VP+ T+ IL ++C + K+ EA ++E+ +KG P V + ++ G +
Sbjct: 522 MEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDL 581
Query: 173 PD-----------------LETFNSLIETIC-------------KSGELGLCADVNTNKI 202
+ T+N +I K E G D T ++
Sbjct: 582 DGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRV 641
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
I K I+ + L +E G L PSL F
Sbjct: 642 MIDGFCKTGNINSGYSFLLVKIEKG--LIPSLTTF 674
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 24/177 (13%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV--------------R 111
T+++ I+ F + +++ A+ + + V+ YN+L +C + +
Sbjct: 253 TVNIFIQGFCQRAMLNEAIRLLDG-VGRGLTPDVITYNTL-ICGLCKNFKVVEAEHYLRK 310
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +G+ PD T+ +++ +C G M+ A + L++ + KGF P + ++N + + G
Sbjct: 311 MVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGD 370
Query: 172 VPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ + FN +E K L LC + + +S++ +I +A +L+ + E+G
Sbjct: 371 IDRAINVFNEAMEKGLKP-NLVLCNTL------VKGLSQQGLILQALKLMNEMSENG 420
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+++ + GLI A+++ N+ + C + YN + +C + I KG
Sbjct: 396 LVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKG 455
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----------- 165
+PD T L++ +C K+ A E + + + G +P V + ++N
Sbjct: 456 HLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVM 515
Query: 166 -----MIKQGSVPDLETFNSLIETICKS 188
M+++G VP++ T+N L E+ CK+
Sbjct: 516 GTFKLMMEKGCVPNIITYNILTESFCKA 543
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 32/163 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT-AFNCQQCVLLYNSLHVCFV 110
IE M+ L+ +++ F +G +D A ++F + + + YN + F
Sbjct: 553 IEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFA 612
Query: 111 -------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-- 155
+M GF PD T+ ++++ +C +G + FL +KG P
Sbjct: 613 GKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLT 672
Query: 156 --------------VRSAKQMVNKMIKQGSVPDLETFNSLIET 184
V A +++ M+ +G VP E N++ E
Sbjct: 673 TFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVP--EVVNTIFEA 713
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +I + G ID A+ VFN+ + KG P+
Sbjct: 357 TYCSLINGLCQDGDIDRAINVFNEA----------------------MEKGLKPNLVLCN 394
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM----------------IKQ 169
LV G + +A + + E+S+ G +P + + ++N + I +
Sbjct: 395 TLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAK 454
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G +PD+ TFN+LI+ CK +L
Sbjct: 455 GHLPDVFTFNTLIDGYCKKLKL 476
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 116 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 171
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M+ G PD T+++L+N C KM +A E E+ KG
Sbjct: 172 LGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 231
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
N V A ++ +M+ Q +PDL T+N+LI +CK+G+L
Sbjct: 232 FTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMS 291
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF+ ++++ +L
Sbjct: 292 MKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRL 332
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 78/192 (40%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ RM+ + +PD T+
Sbjct: 231 TFTTLIDGHCKNGRVDLAMEIYK----------------------RMLSQSLLPDLITYN 268
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP------------ 173
L+ C +G +++A + + E+S KG P + +++ K+G +
Sbjct: 269 TLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQE 328
Query: 174 ----DLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G+ +GL D+ T + I K+ + +
Sbjct: 329 NIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKG 388
Query: 217 FRLLCNLVEDGH 228
+LL + +GH
Sbjct: 389 SKLLKEMQRNGH 400
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D A + + N + +
Sbjct: 286 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVA 336
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T+++N +C G + + + L+E+
Sbjct: 337 YTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQ 396
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 397 RNGHAPSVVTYNVLMN 412
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMV 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K G +D A+E++ + + + ++ YN+L + M
Sbjct: 249 TFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEM 308
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
+ KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 309 VMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 368
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 369 VDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDV 403
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+ M + +KPD + T + +I+ K G +D A E + N + +
Sbjct: 304 LIDEMVM----KGLKPDKI-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T+++N +C G + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RNGHVPSVVTYNVLMN 430
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI++ D +T L++ C G+ +A++ L+E+ G P + ++N+ K+G
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKG 401
Query: 171 SV----------------PDLETFNSLI 182
V P + T+N L+
Sbjct: 402 DVWKGSRLLKEMQRNGHVPSVVTYNVLM 429
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 116/269 (43%), Gaps = 65/269 (24%)
Query: 34 TLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N + L+ +++ ++L + + S P T +++ K G I++A ++F++
Sbjct: 848 TYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEM 907
Query: 91 TAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ C+ +YN L VC F M+ +G PD +++T+L+ A C++G++
Sbjct: 908 LDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRL 967
Query: 138 REAQEFLQELSDKGFNPPV-----------RSAK-----QMVNKMIKQGSVPDLETFNSL 181
++ + ++L++ G P + RS + + N M K G P+L T+NSL
Sbjct: 968 NDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSL 1027
Query: 182 IETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------L 230
I + K G+ EA ++ L+++G K
Sbjct: 1028 ILYLGKEGKAA----------------------EAGKMYEELLKNGWKPNVFTYNALIGG 1065
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G D+AF + +M + PPN Y
Sbjct: 1066 YSVSGSTDNAFASYGQMIVGGCPPNSSTY 1094
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 44/223 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +LI++ GK I++ ++V + + + YN++ V+ +
Sbjct: 813 TYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKL 872
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------PVRSAK-- 160
+ +GF P T+ L++ GK+ +A++ E+ D G P R A
Sbjct: 873 MSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNT 932
Query: 161 ----QMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
++ M+ QG PD++++ LI +C +G ELGL D+ T +
Sbjct: 933 EKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLL 992
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
I + + ++EA L ++ + G + P+L ++ + +
Sbjct: 993 IHGLGRSGRLEEAVSLFNDMEKSG--IAPNLYTYNSLILYLGK 1033
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 46/222 (20%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
L K ELMK S + P ++ ++ K G + A VF++ + + Y
Sbjct: 443 LKAIKRYELMK--SKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYT 500
Query: 104 SLHVC-------------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+ C F MI VPD L++ +G+ EA + EL +
Sbjct: 501 MMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEM 560
Query: 151 GFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL--- 191
+P + ++ + ++G V P+L T+N++++ +CK+GE+
Sbjct: 561 NLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYA 620
Query: 192 ----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
G D+++ ++ + KE + EAFR+ C +
Sbjct: 621 LGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQM 662
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
S + +W MK D + + +++ + G +D A +VF++ + YN
Sbjct: 339 SVIEIWNA---MKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYN 395
Query: 104 SLHVCFVRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
SL F++ R G P+ T+ + +N + SG+ +A + + + K
Sbjct: 396 SLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSK 455
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
G P V + ++ + K G + + +++I G+C D T + I SK
Sbjct: 456 GIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSI------GVCPDNITYTMMIKCCSKA 509
Query: 211 FMIDEAFRLLCNLVE 225
DEA ++ ++E
Sbjct: 510 SNADEAMKVFSEMIE 524
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+T+ ++ E HG+ N V + C Q + + +M +G PD T+
Sbjct: 233 ETVVWLLREMEDHGVKPN-VYSYTICIRVLGQAG--RFEEAYKILQKMEDEGCKPDVVTN 289
Query: 125 TILVNAWCSSGKMREAQEFLQEL--SDK--------------GFNPPVRSAKQMVNKMIK 168
T+L+ C +G++ +A++ ++ SD+ G N RS ++ N M
Sbjct: 290 TVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKA 349
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADV 197
G ++ + ++++ +C+ G + +DV
Sbjct: 350 DGYNDNVVAYTAVVDALCQVGRVDEASDV 378
>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hermannioides]
Length = 417
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 120 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 175
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M+ G PD T+++L+N C KM +A E E+ KG
Sbjct: 176 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 235
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
N V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 236 FTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 295
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 296 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 336
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ RM+ + +PD T+
Sbjct: 235 TFTTLIDGRCKNGRVDLAMEIYK----------------------RMLSQSLLPDLITYN 272
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP------------ 173
L+ C G +++A + + E+S KG P + +++ K+G +
Sbjct: 273 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 332
Query: 174 ----DLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G + L D T + I K+ + +
Sbjct: 333 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKG 392
Query: 217 FRLLCNLVEDGH 228
+LL + DGH
Sbjct: 393 SKLLKEMQRDGH 404
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D A E + N + +
Sbjct: 290 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 340
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ PD T+T+++N +C G + + + L+E+
Sbjct: 341 YTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 400
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 401 RDGHAPSVVTYNVLMN 416
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 111/276 (40%), Gaps = 61/276 (22%)
Query: 43 ISELSMWKTIELM--KPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
+ S WK M + SL++ P T SL+I+ F K G + A V T +
Sbjct: 276 LCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPN 335
Query: 99 VLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
V+ YNSL F MI +G PD +++IL+N +C ++ EA++
Sbjct: 336 VITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFN 395
Query: 146 ELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
E+ +G P +R A+++ M G +PDL T++ L+E CK G
Sbjct: 396 EMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQG 455
Query: 190 ELG-------------LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-- 234
LG L ++ I I ++ K ++ A +L L H L P +
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFV--HGLQPDVQI 513
Query: 235 -----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G D+A F +M+ PPN Y
Sbjct: 514 YTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSY 549
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 43/191 (22%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR--------------KGFVPDKRTHT 125
ID+A+ FN C++ +N L VRM + G P+ T
Sbjct: 71 IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQ 169
IL+N +C + L ++ G P + + ++N M+ +
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190
Query: 170 GSVPDLETFNSLIETIC-------------KSGELGLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ T+ ++I +C K GE+G DV T I ++ K+ +++EA
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA 250
Query: 217 FRLLCNLVEDG 227
+ + G
Sbjct: 251 LDIFSYMKAKG 261
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 32/170 (18%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+S+ K +EL LS TL+++I F +D V K Q ++ + +L
Sbjct: 111 ISLSKQMELA---GLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTL 167
Query: 106 --HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+C F M+ +G PD T+T ++N C G+ A ++++ + G
Sbjct: 168 INGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGC 227
Query: 153 NPPVRSAKQMVNKMIK----------------QGSVPDLETFNSLIETIC 186
P V + +++ + K +G P + ++ SLI+ +C
Sbjct: 228 QPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLC 277
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 46/208 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 130 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 185
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 186 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 245
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 246 FTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 305
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAF 217
GL D T I KE +D AF
Sbjct: 306 MKGLKPDKITYTTLIDGCCKEGDLDTAF 333
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ RM+ + +PD T+
Sbjct: 245 TFTTLIDGHCKNGRVDLAMEIYK----------------------RMLSQSLLPDLITYN 282
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQ 169
L+ C G +++A + E+S KG P + +++ +MI++
Sbjct: 283 TLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQE 342
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL + T + I K+ + +
Sbjct: 343 NIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKG 402
Query: 217 FRLLCNLVEDGH 228
+LL + DGH
Sbjct: 403 SKLLKEMQRDGH 414
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 47/157 (29%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G +D TAF ++
Sbjct: 300 LIDEMSM----KGLKPDKI-----TYTTLIDGCCKEGDLD---------TAFEHRK---- 337
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
RMI++ D +T L++ C G+ +A++ L+E+ G P R+
Sbjct: 338 ---------RMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTM 388
Query: 162 MVNKMIKQGSV----------------PDLETFNSLI 182
++N+ K+G V P + T+N L+
Sbjct: 389 IINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 425
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 101/240 (42%), Gaps = 49/240 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W+ I+LMK ++ + +T S++I + + GL AV FN+ +NC+ + ++ L
Sbjct: 162 WQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISI 221
Query: 109 FVRM------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
R ++ F PD +T LV WC +G + EA+ E+ G P V
Sbjct: 222 LCRKRRATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNV 281
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG----------- 189
+ A + +M+ G P+ TFN+L+ K+G
Sbjct: 282 YTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQ 341
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSLGQFDD 239
+G D T I + K+ +DEA ++L ++V+ G + LF S+ + D
Sbjct: 342 MKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRD 401
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 57/232 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRM 112
T +++I+ + G I A +VF + C+ + +N+L HV + +M
Sbjct: 283 TYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQM 342
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G PD T+ L+ + C G + EA + L N M+K+G
Sbjct: 343 KRMGCPPDTVTYNFLIESHCKDGNLDEALKVL-------------------NSMVKKGCS 383
Query: 173 PDLETFNSLIETICK----SGELGLCADVNTNKISIPAVSKEFMI---------DEAFRL 219
P+ TFN L +I K +G L A + K V+ ++ D +L
Sbjct: 384 PNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKL 443
Query: 220 LCNLVEDGHK-----------LFPSLGQFDDAFCFFSEM-QIKTHPPNRPVY 259
+ ED + ++ +G +++A+ FF EM + K P+ PVY
Sbjct: 444 KKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVY 495
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVI 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRL 350
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ K+G +D A+E++ + + + ++ YN+L H M KG
Sbjct: 253 LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKG 312
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS--AK 160
PDK T+T L++ C G + A E +++ + G RS A+
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAE 372
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+M+ +M+ G PD T+ +I CK G++
Sbjct: 373 KMLREMLNVGLKPDARTYTMIINEFCKKGDV 403
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G +D A E + N + +
Sbjct: 304 LIDEMSM----KGLKPDKI-----TYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
micromera]
Length = 431
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPXSLYFF----NILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +B AF ++E+ +L
Sbjct: 310 MKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRL 350
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLLPDLITYN 286
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP------------ 173
L+ C G +++A + + E+S KG P + +++ K+G++
Sbjct: 287 XLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEE 346
Query: 174 ----DLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL D T + I K+ + +
Sbjct: 347 NIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKG 406
Query: 217 FRLLCNLVEDGH 228
+LL + DGH
Sbjct: 407 SKLLKEMQRDGH 418
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G +B A E + N + +
Sbjct: 304 LIXEMSM----KGLKPDKI-----TYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVA 354
Query: 102 YNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L +C M+ G PD T+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
alba]
Length = 413
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 116 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 171
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 172 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 231
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 232 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMS 291
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 292 MKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL 332
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 231 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEM 290
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 291 SMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRP 350
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 351 VDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDV 385
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D A E + N + +
Sbjct: 286 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVA 336
Query: 102 YNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y ++ +C M+ G PD T+T+++N +C G + + + L+E+
Sbjct: 337 YTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 396
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 397 RNGHVPSVXTYNVLMN 412
>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
inaguensis]
Length = 431
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 46/209 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M+ G PD T+++L+N C KM +A E E+ KG
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 249
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
N V A ++ M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFR 218
GL D T I KE +D AF+
Sbjct: 310 MKGLKPDKFTYTTLIDGCCKEGDLDTAFK 338
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I K+G +D A+E++ + + ++ YN+L H M
Sbjct: 249 TFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEM 308
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREA----QEFLQ---ELSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A + +Q L D + +
Sbjct: 309 SMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRS 368
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD+ T+ +I CK G++
Sbjct: 369 VDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDV 403
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 47/157 (29%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D TAF ++
Sbjct: 304 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLD---------TAFKHRK---- 341
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
RMI+ D +T L++ C G+ +A++ L+E+ G P + +
Sbjct: 342 ---------RMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTM 392
Query: 162 MVNKMIKQGSV----------------PDLETFNSLI 182
++N+ K+G V P + T+N L+
Sbjct: 393 IINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLM 429
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ +E P SL F +++++ F K G + A VF+ T + + V+ +N+L +
Sbjct: 126 EVLECGYPASLYFF----NILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGY 181
Query: 110 VRM--IRKGF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---- 152
+++ + +GF PD T++IL+N C GK+ EA E E+ D G
Sbjct: 182 IKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNG 241
Query: 153 ------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
N V A ++ +M+ QG PDL T+N+LI +CK GEL D+
Sbjct: 242 VTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDL 298
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I K+ +D A+E++ + + ++ YN+L H M
Sbjct: 243 TFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEF----LQE---LSDKGFNPPVR-------- 157
I G PDK ++T L++ C G + A E +QE L D + +
Sbjct: 303 IMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRA 362
Query: 158 -SAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A++M+ +M+ G PD T+ +I CK
Sbjct: 363 SDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+KPD +S + +I+ K G ++ A+E+ NK + + + Y +L C R
Sbjct: 307 LKPDKISY-----TTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGR 361
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
M+ G PD T+T+++N +C + A + L+E+ G P V
Sbjct: 362 ASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGV 416
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 40/239 (16%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K +E+MK T + +++ GK G +D AV + + C+ V+ Y+SL F
Sbjct: 549 KLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASF 608
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M+RKG V D T+++++N C S + +A + + ++G P +
Sbjct: 609 YKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLL 668
Query: 157 RSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ K +++ ++K + L+ FN L E+ L D I + + K +DE
Sbjct: 669 GNYKTLLSSLVKDEKIDFALQIFNELQES-------SLVPDTFVYNIMVNGLVKSNRVDE 721
Query: 216 AFRLLCNLVED--GHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
A C LV+ + P L G+ ++AF F++M + H P+ Y
Sbjct: 722 A----CKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAY 776
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRM 112
T + +++ GK G ++ A +F K T + V+ Y SL + F M
Sbjct: 740 TYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAM 799
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+K VPD T++ L+++ G++ EA F + KG P V +++ K+G V
Sbjct: 800 AKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMV 859
Query: 173 ----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
P++ T+N+L+ + K+G L G D+ T I
Sbjct: 860 DRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNIL 919
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSLGQFD---DAFCFFSEMQIKTH 252
I V K M+DEA + E G L SLG+ D +A F M+ + +
Sbjct: 920 IDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGY 979
Query: 253 PPNRPVY 259
P+ Y
Sbjct: 980 NPSVVTY 986
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 55/246 (22%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN--- 103
+MWK + + L+ ++ FG + A+E+FN+ +F C +YN
Sbjct: 207 AMWK-------EGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVL 259
Query: 104 ----------SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
S + F ++ + PD +T I V+++ SG++ A E +QE+ G +
Sbjct: 260 ELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGID 319
Query: 154 PPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCADV 197
P V + +++ ++K G++ P++ T+ +L+ + K+G L +V
Sbjct: 320 PGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEV 379
Query: 198 ----NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHP 253
N S A++ +ID G+ D A F EM+ +
Sbjct: 380 FVEMKENNCSPDAIAYNTLIDG---------------LGKAGEADMACGLFKEMKDRGLV 424
Query: 254 PNRPVY 259
PN Y
Sbjct: 425 PNLRTY 430
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 32/139 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRM 112
T + ++ K G ++ A EVF + NC + YN+L C F M
Sbjct: 359 TYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEM 418
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+G VP+ RT+ I+++ +G+ EA + +L + QG+V
Sbjct: 419 KDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKE-------------------QGAV 459
Query: 173 PDLETFNSLIETICKSGEL 191
PD+ T+N+LI+ + K G++
Sbjct: 460 PDVFTYNTLIDVLGKGGQM 478
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 48/153 (31%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------------------- 105
S +I+ FGK G++D A+E+F + C ++ YN+L
Sbjct: 847 SSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEK 906
Query: 106 --------------------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMRE 139
F RM KG VPD T T L+ + K+ E
Sbjct: 907 VGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLE 966
Query: 140 AQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
A E + ++G+NP V + +++ + + G V
Sbjct: 967 ACELFDSMEEEGYNPSVVTYNVLIDILGRAGKV 999
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ +E P SL F +++++ F K G + A VF+ T + + V+ +N+L +
Sbjct: 126 EVLECGYPASLYFF----NILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGY 181
Query: 110 VRM--IRKGF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---- 152
+++ + +GF PD T++IL+N C GK+ EA E E+ D G
Sbjct: 182 IKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNG 241
Query: 153 ------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
N V A ++ +M+ QG PDL T+N+LI +CK GEL D+
Sbjct: 242 VTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDL 298
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I K+ +D A+E++ + + ++ YN+L H M
Sbjct: 243 TFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEF----LQE---LSDKGFNPPVR-------- 157
I G PDK ++T L++ C G + A E +QE L D + +
Sbjct: 303 IMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRA 362
Query: 158 -SAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A++M+ +M+ G PD T+ +I CK
Sbjct: 363 GDAEKMLREMLSVGLKPDNGTYTMIINEFCK 393
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+KPD +S + +I+ K G ++ A+E+ NK + + + Y +L C R
Sbjct: 307 LKPDKISY-----TTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGR 361
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
M+ G PD T+T+++N +C + A + L+E+ G P V
Sbjct: 362 AGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGV 416
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 47/209 (22%)
Query: 55 MKPDSLSVFPQTLSLI-IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------- 105
+ PDSL Q L + I+ + + G + AV+ F + F C YN++
Sbjct: 65 LAPDSL----QPLYVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAA 120
Query: 106 -----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----- 155
H +VRM+ G PD RTHT+ + ++C +G+ A L+ LS++G +
Sbjct: 121 YHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYC 180
Query: 156 --VRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------- 191
VR A+ + ++M+ + PD+ TFN+++ +C+ G++
Sbjct: 181 TVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKR 240
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
G+ A+ T I I + ++ ++EA L+
Sbjct: 241 GMSANKFTCNIWIRGLCEDGRLEEAVALV 269
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 57/238 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I G I+ A+E+FN+ A + + +++YNSL R M+ +G
Sbjct: 356 LINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEG 415
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
PD T+ I++N C G + +A + + KG+ P V SA
Sbjct: 416 CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSAL 475
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
Q+V +M G PD+ T+NS++ +CK+G+ G + T I I
Sbjct: 476 QLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENF 535
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTH 252
K ++EA ++ + +DG L P G D A+ F ++ K +
Sbjct: 536 CKINQLEEASGVIVRMCQDG--LVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGY 591
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 48/222 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++ I + G ++ AV + + A+ V+ YN+L +C RM
Sbjct: 248 TCNIWIRGLCEDGRLEEAVALVERMGAYVAPD-VVTYNTLMRGLCKDSKVQEAAQYLGRM 306
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G +PD T+ +++ +C SG ++EA E L++ KGF P + ++N + +G +
Sbjct: 307 MNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDI 366
Query: 173 ----------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
PDL +NSL++ +C+ G E G D+ T I
Sbjct: 367 ERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNII 426
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
I + K I +A ++ + + G+ P + F+ D +C
Sbjct: 427 INGLCKMGNISDAAVVMNDAIVKGY--LPDVFTFNTLIDGYC 466
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 28/191 (14%)
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
V FN CQ+ ++ + +++++G +K T I + C G++ EA
Sbjct: 211 VATFNNVLHALCQKGDVMESG--ALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268
Query: 144 LQELSD-------------KGF--NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
++ + +G + V+ A Q + +M+ QG +PD T+N++I+ CKS
Sbjct: 269 VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKS 328
Query: 189 GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
G L ++ AV K F+ D C+L+ + G + A F+E Q
Sbjct: 329 GMLQ-----EATELLKDAVFKGFVPDRV--TYCSLING----LCAEGDIERALELFNEAQ 377
Query: 249 IKTHPPNRPVY 259
K P+ VY
Sbjct: 378 AKDLKPDLVVY 388
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + ++ K G E F + C+ + YN L + C VRM
Sbjct: 492 TYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRM 551
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ G VPD + L++ +C +G + A Q+L +KG++ +
Sbjct: 552 CQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNM 611
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A+++ +MI +G PDL T+ L++ +CK+ +
Sbjct: 612 QMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANV 646
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 46/226 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK-------CTAFNCQQCVLLYNS----- 104
PD++S + +I F ++G +D A +F K TA + Y+S
Sbjct: 558 PDAVS-----FNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQ 612
Query: 105 -LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
F MI KG+ PD T+ ILV+ C + + A L E+ KGF P + + +M+
Sbjct: 613 MAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRML 672
Query: 164 NK----------------MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAV 207
N M++ G VP E ++++ T K ++ KI + +
Sbjct: 673 NLLAMNHRVSEAVAIIHIMVRMGVVP--EVVDTILSTDKK--------EIAAPKILVEEL 722
Query: 208 SKEFMID-EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
K+ I A+ +L V D +KL + D + F S+ +++
Sbjct: 723 MKKGHISYRAYEVLHEGVRD-NKLTRKARKADASIMFVSQHHKRSY 767
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 41/189 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI KG VP+ T TIL+ C + ++ EAQ+ L+++ G +P V + ++N + KQG
Sbjct: 210 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQ 269
Query: 172 V----------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
V P++ T N LI+ +CK+ E G D+ T
Sbjct: 270 VDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 329
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKL------------FPSLGQFDDAFCFFSEMQIK 250
I + K F +DEAF+L + E G + +LG+ DA FS + K
Sbjct: 330 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 389
Query: 251 THPPNRPVY 259
P+ Y
Sbjct: 390 GFSPDLATY 398
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 80/213 (37%), Gaps = 48/213 (22%)
Query: 63 FP---QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----- 114
FP TLS ++ + + A+++F+ A C L+YN + R +
Sbjct: 426 FPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKAL 485
Query: 115 -----------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
+ F P LV + C G+ +A++ L ++S++GF V S
Sbjct: 486 AVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLL 545
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLC 194
A Q+ M+ G P++ T N +I +C + + LG C
Sbjct: 546 SGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCC 605
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
D+ T I K D A +LL + E G
Sbjct: 606 PDIETCNTLIGGYCKSGRADLARKLLEEMTEAG 638
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 59/188 (31%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----------FVRMI 113
T ++I F G +D A+++ + + + +++ +L +C R +
Sbjct: 11 TYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 70
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
K PD T+T LV+A C +GK EAQ L+E MI +G P
Sbjct: 71 AKDCAPDVMTYTALVHALCKAGKFDEAQGMLRE-------------------MIARGCAP 111
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
D TF++LI+ +CK G S+E +AFR+L ++++ G
Sbjct: 112 DTVTFSTLIDGLCKFG------------------SEE----QAFRVLEDVIQRG------ 143
Query: 234 LGQFDDAF 241
+G D AF
Sbjct: 144 MGNSDAAF 151
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 41/161 (25%)
Query: 102 YNSLHVC---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
YNS+ + +I KGF P +++N +C + + S
Sbjct: 162 YNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLD-------------------S 202
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKEFMID 214
A +++ MI++G VP++ TF LI +CK+ +G L + T S V+ +I+
Sbjct: 203 AYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVIN 262
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
LC GQ DDA+ F M+ + PPN
Sbjct: 263 G----LCK-----------QGQVDDAYELFQLMERRNCPPN 288
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F ++ KGF PD T+T L+ +C + + E E ++E++ KGF P V +
Sbjct: 383 FSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFE 442
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A Q+ + M +G D +N ++E + ++
Sbjct: 443 GNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 478
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 33/137 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF-----V 118
T +++I+ K I+ A +++++ C ++ YNSL +C + + F +
Sbjct: 291 THNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTI 350
Query: 119 PDKR-------THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
P+ T++ L + + + G+M +A L DKGF+
Sbjct: 351 PESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFS------------------ 392
Query: 172 VPDLETFNSLIETICKS 188
PDL T+ SLI CK+
Sbjct: 393 -PDLATYTSLILEYCKT 408
>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 418
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 128 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 184 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 303
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 304 VKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL 344
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS 158
KG PDK T+T L++ C G + A E + + + G RS
Sbjct: 303 SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 397
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+S ++ +KPD + T + +I+ K G +D+A E + N + +
Sbjct: 298 LIDEMS----VKGLKPDKI-----TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVA 348
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 349 YTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 408
Query: 149 DKGFNPPV 156
G P V
Sbjct: 409 RDGHVPSV 416
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 106/262 (40%), Gaps = 57/262 (21%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VFN T + + V+ +N+L ++R
Sbjct: 117 LECGYPASLYFF----NILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 172
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E E+ DKG P
Sbjct: 173 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 232
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 233 FTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 292
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFD 238
GL D T I KE ++ AF ++++ +L + +L G++
Sbjct: 293 MKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYL 352
Query: 239 DAFCFFSEMQIKTHPPNRPVYA 260
DA EM P+ Y
Sbjct: 353 DAEKVLREMLSAGLKPDTGTYT 374
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K G +D A+E++ + + + ++ YN+L H M
Sbjct: 232 TFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM 291
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 292 SMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRY 351
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++++ +M+ G PD T+ +I CK G++
Sbjct: 352 LDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDV 386
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
RMI++ D +T L++ C G+ +A++ L+E+ G P
Sbjct: 325 RMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKG 384
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLI 182
V + +++ +M + G VP + T+N L+
Sbjct: 385 DVWTGSKLLKEMQRDGHVPSVVTYNVLM 412
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G ++ A E + N + +
Sbjct: 287 LIDEMSM----KGLKPDKI-----TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVA 337
Query: 102 YNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L +C M+ G PD T+T+++N +C G + + L+E+
Sbjct: 338 YTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 398 RDGHVPSVVTYNVLMN 413
>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
cujabensis]
Length = 409
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 46/208 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 130 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 185
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM A E E+ KG P
Sbjct: 186 LGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVT 245
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 246 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 305
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAF 217
GL D T I KE +D AF
Sbjct: 306 XKGLKPDKFTYTTLIDGCCKEGDLDTAF 333
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 245 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 304
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREA----QEFLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A + +QE L D + +
Sbjct: 305 SXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRS 364
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 365 VDAEKMLREMLSVGLXPDAGTYTMIINEFCKKGDV 399
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 VKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL 350
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L + + +
Sbjct: 309 SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRS 368
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 369 VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+S ++ +KPD + T + +I+ K G +D+A E + N + +
Sbjct: 304 LIDEMS----VKGLKPDKI-----TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI++ D+ +T L++ C G+ +A++ L+E+ G P R+ ++N+ K+G
Sbjct: 342 RMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 401
Query: 171 SV----------------PDLETFNSLI 182
V P + T+N L+
Sbjct: 402 DVWKGXKLLKEMQRDGHVPSVVTYNVLM 429
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 VKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL 350
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L + + +
Sbjct: 309 SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRS 368
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 369 VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+S ++ +KPD + T + +I+ K G +D+A E + N + +
Sbjct: 304 LIDEMS----VKGLKPDKI-----TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----- 165
RMI++ D+ +T L++ C G+ +A++ L+E+ G P R+ ++N+
Sbjct: 342 RMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 401
Query: 166 -----------MIKQGSVPDLETFNSLI 182
M + G VP + T+N L+
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 51/211 (24%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
WK ++ +K ++ + + S++IE + + G+ + AVE F F+C+ + +N +
Sbjct: 113 WKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHF 172
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
VR M++ PD T+ IL++ C + K ++A E++D+G P
Sbjct: 173 LVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPN 232
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199
+ A+++ +KM G DL T+N L+ CKSG L
Sbjct: 233 QIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYL-------- 284
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
D+AF LL L +DGH L
Sbjct: 285 --------------DDAFTLLQLLTKDGHIL 301
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 103/296 (34%), Gaps = 101/296 (34%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCT---------AFNCQQCVLL----YNSLHVCFVRM 112
T ++++ F K G +D+A + T + C L Y H+ + +M
Sbjct: 270 TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKM 329
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------- 155
+R+ PD +TI++ G++ EA L E++++G P
Sbjct: 330 LRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYL 389
Query: 156 ----------------------------------VRSAKQMVNKMIKQGSVPDLETFNSL 181
+ A+ + +M K G +P + TFNSL
Sbjct: 390 DEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSL 449
Query: 182 IETICKSGEL--------------------------GLCADVNTNKISIPAVSKEFMIDE 215
I +CK+ L D+ + ++ + + + MI +
Sbjct: 450 INGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILK 509
Query: 216 AFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
A++LL LV+ G F G + AF F EMQ+K H P+ Y
Sbjct: 510 AYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYG 565
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
++++ G +PD RT+ IL+N +C G + A + +E+ KG P
Sbjct: 514 LMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYR 573
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A ++ +M+K+G VP+ T+ +++ C+ + L V
Sbjct: 574 AGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 44/172 (25%)
Query: 63 FP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HV 107
FP T S++I K+GLI+ A +F + C V+ +NSL +
Sbjct: 405 FPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARL 464
Query: 108 CFVRM--IRK-----------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
F +M +RK V D + +++ C SG + +A + L +L D G P
Sbjct: 465 LFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLP 524
Query: 155 PVRSAKQMVNKMIK----------------QGSVPDLETFNSLIETICKSGE 190
+R+ ++N K +G +PD T+ +LI+ + ++G
Sbjct: 525 DIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGR 576
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A+ VF+ T + + V+ +N+L ++R
Sbjct: 132 LECGYPASLYFF----NILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIR 187
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E E+ DKG P
Sbjct: 188 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 247
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 248 FTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 302
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 57/195 (29%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+EV+ + M+ + PD T+
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEVYKQ----------------------MLSQSLSPDLITYN 284
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-------- 177
L+ C G +++AQ+ + E+ KG P S +++ K+G DLET
Sbjct: 285 TLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEG---DLETAFEHRKRM 341
Query: 178 -----------FNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMI 213
+ +LI +C+ G +GL D T + I K+ +
Sbjct: 342 IQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDV 401
Query: 214 DEAFRLLCNLVEDGH 228
+LL + DGH
Sbjct: 402 WTGSKLLKEMQRDGH 416
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
RMI++ D +T L++ C G+ +A++ L+E+ G P
Sbjct: 340 RMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKG 399
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLI 182
V + +++ +M + G VP + T+N L+
Sbjct: 400 DVWTGSKLLKEMQRDGHVPSVVTYNVLM 427
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 51/211 (24%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
WK ++ +K ++ + + S++IE + + G+ + AVE F+ F+C+ + +N +
Sbjct: 113 WKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHF 172
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
VR M++ PD T+ IL++ C + K ++A E++D+G P
Sbjct: 173 LVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPN 232
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199
+ A+++ +KM G DL T+N L+ CKSG L
Sbjct: 233 QIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYL-------- 284
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
D+AF LL L +DGH L
Sbjct: 285 --------------DDAFTLLQLLTKDGHIL 301
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 103/296 (34%), Gaps = 101/296 (34%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCT---------AFNCQQCVLL----YNSLHVCFVRM 112
T ++++ F K G +D+A + T + C L Y H+ + +M
Sbjct: 270 TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKM 329
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------- 155
+R+ PD +TI++ G++ EA L E++++G P
Sbjct: 330 LRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYL 389
Query: 156 ----------------------------------VRSAKQMVNKMIKQGSVPDLETFNSL 181
+ A+ + +M K G +P + TFNSL
Sbjct: 390 DEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSL 449
Query: 182 IETICKSGEL--------------------------GLCADVNTNKISIPAVSKEFMIDE 215
I +CK+ L D+ + ++ + + + MI +
Sbjct: 450 INGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILK 509
Query: 216 AFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
A++LL LV+ G F G + AF F EMQ+K H P+ Y
Sbjct: 510 AYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYG 565
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
++++ G +PD RT+ IL+N +C G + A + +E+ KG P
Sbjct: 514 LMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYR 573
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A ++ +M+K+G VP+ T+ +++ C+ + L V
Sbjct: 574 AGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 44/172 (25%)
Query: 63 FP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HV 107
FP T S++I K+GLI+ A +F + C V+ +NSL +
Sbjct: 405 FPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARL 464
Query: 108 CFVRM--IRK-----------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
F +M +RK V D + +++ C SG + +A + L +L D G P
Sbjct: 465 LFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLP 524
Query: 155 PVRSAKQMVNKMIK----------------QGSVPDLETFNSLIETICKSGE 190
+R+ ++N K +G +PD T+ +LI+ + ++G
Sbjct: 525 DIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGR 576
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 128 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 184 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 303
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 304 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 344
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 303 SMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD+ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDV 397
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D A E + N + +
Sbjct: 298 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 348
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T+++N +C G + + + L+E+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQ 408
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 409 RNGHAPSVVTYNVLMN 424
>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
micrantha]
Length = 431
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLLPDLITYN 286
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP------------ 173
L+ C G +++A + + E+S KG P + +++ K+G +
Sbjct: 287 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 346
Query: 174 ----DLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL D T + I K+ + +
Sbjct: 347 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKG 406
Query: 217 FRLLCNLVEDGH 228
+LL + DGH
Sbjct: 407 SKLLKEMHRDGH 418
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D A E + N + +
Sbjct: 304 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMH 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHAPSVVTYNVLMN 430
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 115/286 (40%), Gaps = 65/286 (22%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIE 72
D AA AN+V ++ + E RL+L ++E+ + LM+ + ++ T +L+I
Sbjct: 253 DEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEI-----LTLMEKEGVACNVVTYTLLIH 307
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRMIRKGFVP 119
F G I+ A +F + + V +Y S+ C F M KG +P
Sbjct: 308 GFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIP 367
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKG--FNPPVRSAKQMVNKMIKQGSVPDLET 177
T+ L++ C +G+M AQ + E+ KG NP +
Sbjct: 368 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVI--------------------- 406
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
FN+LI+ C+SG + GL +DV + K DEA LL ++V
Sbjct: 407 FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMV 466
Query: 225 EDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E G ++ G F +A F EM+ K + PN Y
Sbjct: 467 ERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITY 512
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 42/215 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M+ + + P + +I+ + + G++D A+ + + V YNS+ +
Sbjct: 395 MQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNR 454
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M+ +G P+ + T L++ +C G EA+ +E+ +KG P +
Sbjct: 455 KDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNV 514
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ A ++ +++ +G +PD+ T SLI C G++ G
Sbjct: 515 LIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRG 574
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
L +V T I +SK+ +EAF+L + E G
Sbjct: 575 LVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETG 609
>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
origanoides]
Length = 431
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ N+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V AK++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 MKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRL 350
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A E++ + + + ++ YN+L H M
Sbjct: 249 TFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM 308
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSD-------KGFNPPVRS 158
KG PDK T+T L+B C G + A E +QE L D G RS
Sbjct: 309 SMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRS 368
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ PD T+ +I CK G++
Sbjct: 369 VDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDV 403
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI ++SM + +KPD + T + +I+ K G +D+A E + N + ++
Sbjct: 304 LIDDMSM----KGLKPDKI-----TYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVV 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ PD T+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHAPSVVTYNVLMN 430
>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
diamantinensis]
Length = 284
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 87/208 (41%), Gaps = 46/208 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L + R
Sbjct: 79 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXR 134
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD ++++L+N C KM +A E E+ KG P
Sbjct: 135 LGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVT 194
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 195 FTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMG 254
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAF 217
GL D T I KE +D AF
Sbjct: 255 MKGLKPDKITYTTLIDGCCKEGNLDTAF 282
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 115/286 (40%), Gaps = 65/286 (22%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIE 72
D AA AN+V ++ + E RL+L ++E+ + LM+ + ++ T +L+I
Sbjct: 249 DEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEI-----LTLMEKEGVACNVVTYTLLIH 303
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRMIRKGFVP 119
F G I+ A +F + + V +Y S+ C F M KG +P
Sbjct: 304 GFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIP 363
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKG--FNPPVRSAKQMVNKMIKQGSVPDLET 177
T+ L++ C +G+M AQ + E+ KG NP +
Sbjct: 364 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVI--------------------- 402
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
FN+LI+ C+SG + GL +DV + K DEA LL ++V
Sbjct: 403 FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMV 462
Query: 225 EDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E G ++ G F +A F EM+ K + PN Y
Sbjct: 463 ERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITY 508
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 42/215 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M+ + + P + +I+ + + G++D A+ + + V YNS+ +
Sbjct: 391 MQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNR 450
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M+ +G P+ + T L++ +C G EA+ +E+ +KG P +
Sbjct: 451 KDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNV 510
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ A ++ +++ +G +PD+ T SLI C G++ G
Sbjct: 511 LIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRG 570
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
L +V T I +SK+ +EAF+L + E G
Sbjct: 571 LVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETG 605
>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
duartei]
Length = 412
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 115 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 171 XGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 230
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 231 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 290
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 291 VKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRL 331
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L+N C G + A E +QE L + + +
Sbjct: 290 SVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRS 349
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 350 VDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDV 384
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+S ++ +KPD + T + +I K G +D+A E + N + +
Sbjct: 285 LIDEMS----VKGLKPDKI-----TYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVA 335
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + L+E+
Sbjct: 336 YTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQ 395
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 396 RDGHVPSVVTYNVLMN 411
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----- 165
RMI++ D+ +T L++ C G+ +A++ L+E+ G P R+ ++N+
Sbjct: 323 RMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXG 382
Query: 166 -----------MIKQGSVPDLETFNSLI 182
M + G VP + T+N L+
Sbjct: 383 DVWXGSKLLKEMQRDGHVPSVVTYNVLM 410
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 29/148 (19%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV---C--FV 110
P T +I+ K G +D+A E+F+ + C+ +YN L HV C F
Sbjct: 895 PCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFK 954
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
RM+++G PD +++TILV+ C +G++ +A + ++L G +P + + M+N
Sbjct: 955 RMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQ 1014
Query: 165 ----------KMIKQGSVPDLETFNSLI 182
+M +G VPDL T+NSLI
Sbjct: 1015 RTEEALSLFHEMQNRGIVPDLYTYNSLI 1042
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M GFV + ++ L++ SG +EA E + + +G P +++ + M+ G
Sbjct: 184 KMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSAL---MVASG 240
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--- 227
+++T L+E + +GL ++ T I I + ++ IDEA+R++ + +DG
Sbjct: 241 KRRNIKTVMGLLEEM---ESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGP 297
Query: 228 -----HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
L +L + DDA C F++M+ +H P++ Y
Sbjct: 298 DVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTY 337
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 31/178 (17%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
+S+ + P T ++ I G+ G ID A + + C V+ Y L +C
Sbjct: 256 ESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKL 315
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
F +M PDK T+ L++ + G + + ++ E+ G+ P V + +
Sbjct: 316 DDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTIL 375
Query: 163 VNK----------------MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISI 204
VN M KQG +P+L T+N+LI + ++ L D+ +N S+
Sbjct: 376 VNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESL 433
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR- 114
+SL V P T L+I+ GK G A+E F K A ++ N+ M R
Sbjct: 431 ESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRL 490
Query: 115 ------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
G PD T+ +++ + G++ EA + L E+S P V +
Sbjct: 491 GEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSL 550
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
++ + K G V + + C+ E+ L V T I + + KE I +A +L +
Sbjct: 551 IDTLYKAGRVEE------AWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFES 604
Query: 223 LVEDGHKLFPSLGQFD---DAFCFFSEMQI 249
+ +GH P+ F+ D C E+ +
Sbjct: 605 M--NGHGCSPNTITFNTLLDCLCKNDEVDL 632
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/266 (19%), Positives = 98/266 (36%), Gaps = 57/266 (21%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W E MK + T + +I+ GK G I+ +++++ C+ + YN +
Sbjct: 810 WNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISN 869
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
V+ ++ F P T L++ SG++ +A E + G P
Sbjct: 870 LVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPN 929
Query: 156 ----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------- 191
V +A + +M+K+G PDL+++ L++ +C +G +
Sbjct: 930 SAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFE 989
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------ 234
GL D+ + I + + +EA L + G + P L
Sbjct: 990 KLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRG--IVPDLYTYNSLILNLGI 1047
Query: 235 -GQFDDAFCFFSEMQIKTHPPNRPVY 259
G ++A + E+Q PN Y
Sbjct: 1048 VGMIEEAGKIYEELQFIGLKPNVFTY 1073
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 46/206 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+ PDS+ T +++++ + K G +D A+++ ++ + C+ V++ NSL
Sbjct: 505 LAPDSV-----TYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGR 559
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
F RM P T+ IL+ G++++A + + ++ G +P
Sbjct: 560 VEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNT 619
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG------------L 193
V A +M KM PD+ TFN++I K ++ L
Sbjct: 620 LLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLL 679
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRL 219
D T +P V K I++AFR+
Sbjct: 680 RPDHVTLCTLLPGVIKSGQIEDAFRI 705
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 57/223 (25%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
LID +EV N A+N F M G PD T+ L++A SGK+
Sbjct: 796 LIDGFLEVHNVEVAWNL-------------FEEMKSAGCAPDTFTYNSLIDAHGKSGKIN 842
Query: 139 EAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLI 182
E + E+ +G P + +++ ++K + P TF LI
Sbjct: 843 ELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLI 902
Query: 183 ETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+ + KSG L G + I + K +D A +V++G +
Sbjct: 903 DGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIR 962
Query: 230 LFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
P L G+ DDA +F +++ P+ Y
Sbjct: 963 --PDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAY 1003
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 41/189 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI KG VP+ T TIL+ C + ++ EAQ+ L+++ G +P V + ++N + KQG
Sbjct: 258 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQ 317
Query: 172 V----------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
V P++ T N LI+ +CK+ E G D+ T
Sbjct: 318 VDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 377
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKL------------FPSLGQFDDAFCFFSEMQIK 250
I + K F +DEAF+L + E G + +LG+ DA FS + K
Sbjct: 378 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 437
Query: 251 THPPNRPVY 259
P+ Y
Sbjct: 438 GFSPDLATY 446
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 48/213 (22%)
Query: 63 FP---QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----- 114
FP TLS ++ + + A+++F+ A C L+YN + R +
Sbjct: 474 FPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKAL 533
Query: 115 -----------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
+ F P LV + C GK +A++ L ++S++GF V S
Sbjct: 534 AVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLL 593
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLC 194
A Q+ M+ G P++ T N +I +C + + LG C
Sbjct: 594 SGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCC 653
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
D+ T I K D A +LL + E G
Sbjct: 654 PDIETCNTLIGGYCKSGRADLARKLLEEMTEAG 686
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 31/136 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----------FVRMI 113
T ++I F G +D A+++ + + + +++ +L +C R +
Sbjct: 59 TYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 118
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
K PD T+T LV+A C +GK EAQ L+E M+ QG P
Sbjct: 119 AKDCAPDVMTYTALVHALCKAGKFDEAQGMLRE-------------------MVAQGCAP 159
Query: 174 DLETFNSLIETICKSG 189
D TF++LI+ +CK G
Sbjct: 160 DTVTFSTLIDGLCKFG 175
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 34/152 (22%)
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----- 172
+P+K T+ IL+ + S+G + A + L+E+ GF ++ + G V
Sbjct: 54 MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALE 113
Query: 173 ----------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
PD+ T+ +L+ +CK+G+ G D T I + K
Sbjct: 114 HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCK 173
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAF 241
++AFR+L ++++ G +G D AF
Sbjct: 174 FGSEEQAFRVLEDVIQRG------MGNSDAAF 199
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 30/144 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
+I KGF P +++N +C + + SA +++ MI++G
Sbjct: 223 VIAKGFTPTVLMFNLVINGFCKAKDLD-------------------SAYKLLEVMIEKGC 263
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
VP++ TF LI +CK+ +G + + LC
Sbjct: 264 VPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCK--------- 314
Query: 232 PSLGQFDDAFCFFSEMQIKTHPPN 255
GQ DDA+ F M+ + PPN
Sbjct: 315 --QGQVDDAYELFQLMERRNCPPN 336
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F ++ KGF PD T+T L+ +C + + E E ++E++ KGF P V +
Sbjct: 431 FSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFE 490
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A Q+ + M +G D +N ++E + ++
Sbjct: 491 GNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 526
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 33/137 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF-----V 118
T +++I+ K I+ A +++++ C ++ YNSL +C + + F +
Sbjct: 339 THNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTI 398
Query: 119 PDKR-------THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
P+ T++ L + + + G+M +A L DKGF+
Sbjct: 399 PESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFS------------------ 440
Query: 172 VPDLETFNSLIETICKS 188
PDL T+ SLI CK+
Sbjct: 441 -PDLATYTSLILEYCKT 456
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 43/230 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
++E+ HG+ +AV VF + C + L + F M ++G D+ THT L+N
Sbjct: 344 VLEDMTMHGVALDAV-VFTTVISGFCSKGDLA--AARRLFEEMQKRGLAADRVTHTALIN 400
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------P 173
C +G+++EA LQE+ DKG + V + +++ K+G++ P
Sbjct: 401 GLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAP 460
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++ T+ +L + +CK G++ GL +V T I + K +++A R++
Sbjct: 461 NVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIM 520
Query: 221 CNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ GH+ L +L G+FD A EM K P+ Y
Sbjct: 521 TEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATY 570
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 53/236 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + + + K G + A E+ ++ + V YNSL +C M
Sbjct: 464 TYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEM 523
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
G D T+T L++ C SG+ A LQE+ DKG P V
Sbjct: 524 EAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRV 583
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV-------------NTNKIS 203
K+++ M+++ P++ T+NSL++ C + ++ NT I
Sbjct: 584 EGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNIL 643
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-----------LGQFDDAFCFFSEMQ 248
I K + EA ++E G +L S +F +A FF +M+
Sbjct: 644 IKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMR 699
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 50/247 (20%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-CQQCVLLYNSLHVCFVRMIRKGF 117
LS P++ + ++ +D A+ +F + N C +LL L ++ + F
Sbjct: 223 GLSPSPESCNAVLSRLP----LDEAIALFRELPDKNVCSHNILLKALLSAGRLKDACQHF 278
Query: 118 -----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
PD T+ +V+ +C G++ A + L E++ KG V
Sbjct: 279 DEMSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQV 338
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A +++ M G D F ++I C G+L GL AD T+
Sbjct: 339 SDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTAL 398
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTH 252
I + + + EA R+L +V+ G + + G +AF +EM +
Sbjct: 399 INGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRV 458
Query: 253 PPNRPVY 259
PN Y
Sbjct: 459 APNVVTY 465
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 55/231 (23%)
Query: 85 EVFNKCTAF--NCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVN 129
E+ N + + NC+ V+ YN + +C F M +G +P ++ L++
Sbjct: 199 EMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIH 258
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
+C +GK E++ L E+ D+G P V AK+++ MI+ G VP
Sbjct: 259 GFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 318
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
DL T+NSLIE C G+L G DV + + I SK ++EA +L
Sbjct: 319 DLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLY 378
Query: 221 CNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
++ G + + SL G+ DDA FS M+ N Y
Sbjct: 379 NEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 429
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 21/174 (12%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
Y+ + + +M G D+ T IL+N C+ ++RE + +G++P
Sbjct: 85 YSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNT 144
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
+ A ++ +M K G PD+ T+ +LI+ +C +G + + ++ ++
Sbjct: 145 LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLN-- 202
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+S+ + + + N++ DG +G+ D+A F EM+ + P+ Y
Sbjct: 203 DISRYEINCKPNVITYNIIVDG---LCKVGREDEAKQLFEEMKTQGMIPSIISY 253
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQG 170
L++ C +GK+ A E ++LS++G P V A ++ KM G
Sbjct: 466 LIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG 525
Query: 171 SVPDLETFNSLIETICKSGEL 191
PD+ T+N+L+ +S +L
Sbjct: 526 CTPDIITYNTLMRGFYESNKL 546
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ +F K G I A VFN T + + V+ +N+L ++R
Sbjct: 128 LECGYPASLYFF----NILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E E+ DKG P
Sbjct: 184 LGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +C+ G+L D+
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDL 298
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L R M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D G+ +
Sbjct: 303 SMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRY 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++++ +M+ G PD T+ +I CK G++
Sbjct: 363 LDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDV 397
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 45/195 (23%)
Query: 109 FVR-MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN--- 164
F+R M KG P+ T +++N C G+++E E L E+S KG+ P + +VN
Sbjct: 40 FLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYC 99
Query: 165 -------------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVN 198
+M++ G P++ T+ SLI ++CK+G L GLC +
Sbjct: 100 KEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNER 159
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFS 245
T I +++ ++DEA+R+L + G PS LG+ ++A
Sbjct: 160 TYTTIINGFAQQGLLDEAYRVLNEMTRSG--FIPSIVTYNALINGHCVLGRMEEAIGLLQ 217
Query: 246 EMQIKTHPPNRPVYA 260
+M K P+ Y+
Sbjct: 218 DMVGKGVLPDVVSYS 232
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+T + II F + GL+D A V N+ M R GF+P T+
Sbjct: 159 RTYTTIINGFAQQGLLDEAYRVLNE----------------------MTRSGFIPSIVTY 196
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIK 168
L+N C G+M EA LQ++ KG P V S A QM +MI
Sbjct: 197 NALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIG 256
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ +PD T++SLI+ +C+ L D+ ++I EF C
Sbjct: 257 KSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYC------- 309
Query: 229 KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G + A EM K P+ Y
Sbjct: 310 ----KEGDLNKALHLHDEMIQKGFLPDAVTY 336
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 55/239 (23%)
Query: 68 SLIIEEFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
S ++ E + G + + V V C N Q ++L+ M+R G P+ T
Sbjct: 73 SEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLH-------AEMVRNGLSPNVVT 125
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMI 167
+T L+N+ C +G + A EF ++ +G P R+ A +++N+M
Sbjct: 126 YTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMT 185
Query: 168 KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
+ G +P + T+N+LI C G + G+ DV + I ++ +D
Sbjct: 186 RSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELD 245
Query: 215 EAFRLLCNLVEDGHKLFP------SLGQ-------FDDAFCFFSEMQIKTHPPNRPVYA 260
AF++ ++ G + P SL Q +A F EM PP+ Y
Sbjct: 246 RAFQMKVEMI--GKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYT 302
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 62/167 (37%), Gaps = 47/167 (28%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ PD+ T+T L+NA+C G + +A E+ KGF P + ++N + K
Sbjct: 286 FQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNK 345
Query: 169 QG----------------SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
Q S+P T+N+LIE C N S A+ K F
Sbjct: 346 QARSKEARRLLLKLFYDDSIPSAVTYNTLIENCC-----------NIEFKSAVALVKGFC 394
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G D+A F M K H PN +Y
Sbjct: 395 MK--------------------GLMDEADQVFESMINKNHKPNEAIY 421
>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
lycioides]
Length = 397
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VFN T + + V+ +N+L ++R
Sbjct: 117 LECGYPASLYFF----NILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 172
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E E+ DKG P
Sbjct: 173 LGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVT 232
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDL 287
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEM 291
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 292 SMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERY 351
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++++ +M+ G PD T+ +I CK G++
Sbjct: 352 LDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDV 386
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 46/208 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--- 155
M G PD T+++L+N C KM +A + E+ +KG P
Sbjct: 190 LGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVT 249
Query: 156 -------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAF 217
GL D T I KE +D AF
Sbjct: 310 MXGLKPDKITYTTLIDGCCKEGDLDTAF 337
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 249 TFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEM 308
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
G PDK T+T L++ C G + A E +QE L D + +
Sbjct: 309 SMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRS 368
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 369 VDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDV 403
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM +KPD + T + +I+ K G +D A E N + +
Sbjct: 304 LIDEMSMXG----LKPDKI-----TYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFN---KCTAF-NCQQCVLLYNSL---------HVCFV 110
P +I++ + + GL NA+ VF+ KC + + C L N+L H +
Sbjct: 156 PTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQ 215
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+MIR G VPD +I+VNA+C GK+ EA F++++ + G P + + ++N +
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYV--- 272
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
S+ D+E +++ + E G+ +V T + I K+ +DEA ++L + E+ L
Sbjct: 273 SLGDVEAAKGVLKFM---SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA-AL 328
Query: 231 FP---SLGQFDDAFC 242
P + G D +C
Sbjct: 329 VPDERAYGVLIDGYC 343
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAK 160
+P+ + I + C +GK+ +A+ F LS KGF P V A
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
++ ++M+++G VP++ T+N+LI +CKS + GL +V T I
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 829
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
K +D AF+L ++E+G
Sbjct: 830 CKIGNMDAAFKLKDKMIEEG 849
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M+R+G VP+ T+ L+N C S + AQ +L KG P V
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGN 834
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+A ++ +KMI++G P + T+++LI +CK G++
Sbjct: 835 MDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDI 870
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 29/142 (20%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
KGFVPD T+ L++ + ++G + EA E+ +G P V
Sbjct: 743 KGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDR 802
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIP 205
A+++ +K+ ++G P++ T+N+LI+ CK G E G+ V T I
Sbjct: 803 AQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALIN 862
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
+ K I+ + +LL +++ G
Sbjct: 863 GLCKHGDIERSMKLLNQMIKAG 884
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
++ +GF + T +++ C GKM EA+E ++ D G +P + + +++ K +
Sbjct: 498 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 557
Query: 172 V----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V P +E +NSLI + KS L GL ++ T
Sbjct: 558 VGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGA 617
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I KE M+D+AF + E+G
Sbjct: 618 LIDGWCKEGMLDKAFSSYFEMTENG 642
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 17/155 (10%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
VPD+R + +L++ +C +GK+ +A L E+ G + ++N K+G + + E
Sbjct: 328 LVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAE 387
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------H 228
I + + L D + + +E EAF L ++++G +
Sbjct: 388 G------VITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYN 441
Query: 229 KLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
L L G FDDA + M + P+ Y+
Sbjct: 442 TLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYS 476
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 72 EEFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
+E + GL+ N V + C + N + L++ LH +KG P+ T+ L
Sbjct: 773 DEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLH-------QKGLFPNVVTYNTL 825
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++ +C G M A + ++ ++G +P V + ++N + K G D+E L+ + K
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHG---DIERSMKLLNQMIK 882
Query: 188 SG 189
+G
Sbjct: 883 AG 884
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 32/138 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+ ++I+ + + G ID+AV + ++ + + + NSL R
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ PD ++ L++ +C G EA FN + +KM+++G
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEA-----------FN--------LCDKMLQEGI 433
Query: 172 VPDLETFNSLIETICKSG 189
P + T+N+L++ +C+ G
Sbjct: 434 EPTVLTYNTLLKGLCRVG 451
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M G PD T+ L++ +C + + +A + + + +P + +++ + K
Sbjct: 530 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFK 589
Query: 169 ----------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+G P++ T+ +LI+ CK G L GL A++
Sbjct: 590 SRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIII 649
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
+ + + IDEA L+ +V+ H FP
Sbjct: 650 CSTMVSGLYRLGRIDEANLLMQKMVD--HGFFP 680
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G P+ T+ L++ WC G + +A E+++ G + + MV+ + + G + +
Sbjct: 606 RGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDE 665
Query: 175 LETFNSLIETICKSG-----ELGLCADVNTNKISIPAVSKEFMIDEA---FRLLCNLVED 226
N L++ + G E L +D+ I A S +DE+ F L N+V +
Sbjct: 666 A---NLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADS----LDESCKTFLLPNNIVYN 718
Query: 227 -GHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ DDA FFS + +K P+ Y
Sbjct: 719 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY 752
>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 418
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 128 LECGYPASLYFF----NILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E +E+ KG P
Sbjct: 184 LGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G L
Sbjct: 244 FTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMS 303
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 304 MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 344
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+EV+ + + + ++ YN+L H M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 303 SMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 363 VDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDV 397
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
L+ E+SM + +KPD + T + +I+ K G +D A E + N + +
Sbjct: 298 LMDEMSM----KGLKPDKI-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 348
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T+++N +C G + + + L+E+
Sbjct: 349 YTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 408
Query: 149 DKGFNPPV 156
G P V
Sbjct: 409 RDGHAPSV 416
>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 521
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 41/216 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+I+ + + G++D+A+++ + + YN+L RM G VP+ T+T L++
Sbjct: 312 MIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRM---GVVPNYVTYTTLIS 368
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVP 173
C G M EA+ +E+++KG P V R A++ +M K+G VP
Sbjct: 369 IHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVP 428
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
D+ T+ SL+ C +G++ G +V I ++KE + AF+L
Sbjct: 429 DVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLY 488
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
++++ G L P DD+ +S + H NR
Sbjct: 489 DDMLKAG--LIP-----DDS--LYSALVGSLHTDNR 515
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 105/284 (36%), Gaps = 72/284 (25%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
+ + +E+M+ + + T +++++ I +FN+ A N V LY ++
Sbjct: 185 VQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVIN 244
Query: 108 CFVRM-------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--- 151
+ R + G P++RT+ +L+ +C G+M A+ L ++ +G
Sbjct: 245 AYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGL 304
Query: 152 ----FNPPVRS--AKQMVNKMIK--------------------------QGSVPDLETFN 179
FN + K MV+ +K G VP+ T+
Sbjct: 305 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYT 364
Query: 180 SLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+LI CK G++ G V T + I +K+ I EA R + +
Sbjct: 365 TLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKK 424
Query: 227 GH----KLFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G + SL G+ D A F EM+ + PN Y
Sbjct: 425 GFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAY 468
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 35/203 (17%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
SV P S++++ K G +D+A + + L YNSL C+VR
Sbjct: 128 SVSPFAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 187
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------- 156
M +G T+TILV++ ++ + + + E+ V
Sbjct: 188 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYC 247
Query: 157 -----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAV 207
R A +++++ + G P+ T+ LI+ CK G++ L AD+ + + +
Sbjct: 248 RAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQI 307
Query: 208 SKEFMIDEAFRLLCNLVEDGHKL 230
MID R +V+D K+
Sbjct: 308 IFNTMIDGYCRK--GMVDDALKI 328
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 45/267 (16%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDN 82
N + H+I + NL +L ELM D S P T +I+ K G +
Sbjct: 865 NAITHNIIISALVKSNNLNKALDLYY----ELMSGD-FSPTPCTYGPLIDGLLKAGRSEQ 919
Query: 83 AVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILVN 129
A+++F + + C ++YN L C F +M+++G PD +++TILV
Sbjct: 920 AMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVE 979
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQGSVP 173
C +G++ EA ++ +EL G +P S ++N +M +G P
Sbjct: 980 CLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISP 1039
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
DL T+N+LI + +G++ + + + F + R GH L
Sbjct: 1040 DLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIR--------GHSLS-- 1089
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G D AF F +M + PN +A
Sbjct: 1090 -GNKDQAFSVFKKMMVVGCSPNTETFA 1115
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 51/207 (24%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E MK L T ++ I G+ ID+A +F +
Sbjct: 258 LEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKE---------------------- 295
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M +G PD T+T+L++A C++GK+ +A+E ++ +P
Sbjct: 296 MDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGD 355
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+ + K+ N+M G PD+ T+ LIE +CKSG++ G+ +++T
Sbjct: 356 LETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNT 415
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK 229
I + K +DEA LL N+ G K
Sbjct: 416 MICGLLKARRLDEALELLENMESLGVK 442
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 36/217 (16%)
Query: 34 TLNRLNLTLISELSMWKTIELMKP-DSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFN-- 88
T N + L+ + + +EL++ +SL V P S L I+ +GK G A++ F
Sbjct: 412 TYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETM 471
Query: 89 -------KCTAFNCQQCVL-----------LYNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
A N L ++N LH C G PD T+ +L+
Sbjct: 472 KKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKC-------GLSPDSVTYNMLMKC 524
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ +G++ +A + L E+ KG P V ++N + K G V ++ + +
Sbjct: 525 YSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRV------DAAWKMFGRLKN 578
Query: 191 LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
L L V T I + + KE I +A L ++ E G
Sbjct: 579 LKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESG 615
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 35/172 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+ RMI +G P +T++ L+ A G R+ L+E+ G P + +
Sbjct: 223 YKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGR 282
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVS 208
A + +M +G PD+ T+ LI+ +C +G+L L + + S V+
Sbjct: 283 ARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVT 342
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
++D+ F +G + F++EM++ + P+ Y
Sbjct: 343 YITLMDK---------------FGKVGDLETVKRFWNEMEVDGYAPDVVTYT 379
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 40/197 (20%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------PV 156
N L+ + M +G P+ TH I+++A S + +A + EL F+P P+
Sbjct: 848 NKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPL 907
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GL 193
A ++ +M+ G P+ +N LI KSGE+ G+
Sbjct: 908 IDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGI 967
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSLGQ---FDDAFC 242
D+ + I + + IDEA + L G + + LG+ D+A
Sbjct: 968 RPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALS 1027
Query: 243 FFSEMQIKTHPPNRPVY 259
FSEM+ + P+ Y
Sbjct: 1028 LFSEMKNRGISPDLYTY 1044
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 53/236 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------FVRMIRK- 115
T +I+ KHG +D A E+ ++ Q V +YNS+ +C ++++++
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
G PD T+T +++A+C G + +A + LQE+ D+G P V
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+++ M+++G VPD T+N+L++ C + G+ D NT I
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNIL 649
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQ 248
I K + EA+ L ++E G+ K F +F +A F EM+
Sbjct: 650 IKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMR 705
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 34/172 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F MI +G PD+ T+T L++ +C +G+M A E+ G P +
Sbjct: 421 FHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCK 480
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+A +++++M K+G ++ +NS++ ICK+G + G+ D T
Sbjct: 481 HGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT 540
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
I A + ID+A +LL +++ G L P++ F+ + FC ++
Sbjct: 541 YTTVIDAYCRLGDIDKAHKLLQEMLDRG--LQPTVVTFNVLMNGFCMLGMLE 590
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M+ K PD T+T L+ + GK+ E Q E+ +G P +
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445
Query: 159 AKQMV------NKMIKQGSVPDLETFNSLIETICKSGEL 191
A +MV N+M++ G P++ T+ +LI+ +CK GEL
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGEL 484
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
G++ +A+ +N +C + + N+ + RM +G PD T+ IL+ C + +
Sbjct: 603 GIVPDAI-TYNTLMKQHCIRNSM--NTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNL 659
Query: 138 REAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSL 181
+EA +E+ +KG+ P V S A+++ +M G V D E +N
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFF 719
Query: 182 IETICKSGE----LGLCAD 196
++ + G+ L LC +
Sbjct: 720 VDMCYEEGDVEITLNLCDE 738
>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
viburnoides]
Length = 431
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C K +A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVX 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 XKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRL 350
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMI 113
+ +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS- 158
KG PDK T+T L++ C G + A E + + + G RS
Sbjct: 310 XKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSV 369
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 370 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
+ +M+ + PD T+ L+ C G +++A + E+S KG P + +++
Sbjct: 270 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCK 329
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNT 199
+MI++ D + +LI +C G +GL D T
Sbjct: 330 EGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDART 389
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I K+ + + +LL + DGH
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGH 418
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+S + +KPD + T + +I+ K G +D A E + N + +
Sbjct: 304 LIDEMSX----KGLKPDKI-----TYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVX 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI++ D +T L++ C G+ +A++ L+E+ G P R+ ++N+ K+G
Sbjct: 342 RMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 401
Query: 171 SV----------------PDLETFNSLI 182
V P + T+N L+
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 64/257 (24%)
Query: 46 LSMWKTIELMKPD--SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
S W+ M + SL++ P T SL+I F K G + A V T + V+
Sbjct: 310 FSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVT 369
Query: 102 YNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y+SL F MI KG PD ++ IL+N +C + ++ EA
Sbjct: 370 YSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEA-------- 421
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCA 195
KQ+ N+MI QG PD+ ++N+LI+ +C+ G L G
Sbjct: 422 -----------KQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP 470
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC---------- 242
D+ T I + K+ + +AFRL + L P++ ++ DA C
Sbjct: 471 DLCTYSILLDGFCKQGYLAKAFRLFRAM--QSTYLKPNMVMYNILIDAMCKSRNLKEARK 528
Query: 243 FFSEMQIKTHPPNRPVY 259
FSE+ ++ PN +Y
Sbjct: 529 LFSELFVQGLQPNVQIY 545
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 36/172 (20%)
Query: 46 LSMWKTIEL--MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
+S+ K +EL + PD+ TL ++I F + +D V K Q ++ +N
Sbjct: 142 ISLSKQMELAGLSPDTY-----TLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFN 196
Query: 104 SL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+L +C F M+ +G+ PD T+T ++N C G+ A +++ +
Sbjct: 197 TLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEA 256
Query: 151 GFNPPVRSAKQMVNKMIK----------------QGSVPDLETFNSLIETIC 186
G P V + +++ + K +G P++ T+NSLI+ +C
Sbjct: 257 GCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLC 308
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 56/201 (27%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
KPD S +++I + K I A ++FN+ ++ YN+L
Sbjct: 399 KPDVFSY-----NILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRL 453
Query: 106 ---HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------- 155
H F M+ G +PD T++IL++ +C G + +A + + P
Sbjct: 454 REAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNIL 513
Query: 156 ---------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPA 206
++ A+++ +++ QG P+++ + ++I +CK G
Sbjct: 514 IDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEG----------------- 556
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
++DEA N+ EDG
Sbjct: 557 -----LLDEALEAFRNMEEDG 572
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S++++ F K G + A +F + + +++YN
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN---------------------- 511
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIET 184
IL++A C S ++EA++ EL +G P V+ ++N + K+G + + LE F ++ E
Sbjct: 512 ILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEED 571
Query: 185 ICKSGEL 191
C E
Sbjct: 572 GCPPNEF 578
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 65/183 (35%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR--------------KGFVPDKRT-H 124
ID+A+ FN + C++ +N L V+M G PD T H
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161
Query: 125 TI----------------------------------LVNAWCSSGKMREAQEFLQELSDK 150
+ L+N C GK +A E ++ +
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221
Query: 151 GFNPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGELGLC 194
G+ P V + ++N KM + G PD+ T++++I+++CK +
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 281
Query: 195 ADV 197
D+
Sbjct: 282 LDI 284
>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
barbata]
Length = 429
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MI 113
++++ F K G I A VF+ + + V+ YN+L ++R M+
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVR 157
G PD T+++L+N C KM +A E E+ KG P V
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A ++ +M+ Q +PDL T+N+LI +CK G+L GL D T I
Sbjct: 263 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLI 322
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKL 230
KE +D AF ++++ +L
Sbjct: 323 DGCCKEGDLDAAFEHRKRMIQENIRL 348
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 306
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG DK T+T L++ C G + A E +QE L D + +
Sbjct: 307 SMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 366
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 367 VDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDV 401
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFN---KCTAF-NCQQCVLLYNSL---------HVCFV 110
P +I++ + + GL NA+ VF+ KC + + C L N+L H +
Sbjct: 122 PTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQ 181
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+MIR G VPD +I+VNA+C GK+ EA F++++ + G P + + ++N +
Sbjct: 182 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYV--- 238
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
S+ D+E +++ + E G+ +V T + I K+ +DEA ++L + E+ L
Sbjct: 239 SLGDVEAAKGVLKFM---SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA-AL 294
Query: 231 FP---SLGQFDDAFC 242
P + G D +C
Sbjct: 295 VPDERAYGVLIDGYC 309
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAK 160
+P+ + I + C +GK+ +A+ F LS KGF P V A
Sbjct: 676 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 735
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
++ ++M+++G VP++ T+N+LI +CKS + GL +V T I
Sbjct: 736 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 795
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
K +D AF+L ++E+G
Sbjct: 796 CKIGNMDAAFKLKDKMIEEG 815
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
++ +GF + T +++ C GKM EA+E ++ D G +P + + +++ K +
Sbjct: 464 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 523
Query: 172 V----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V P +E +NSLI + KS L GL ++ T
Sbjct: 524 VGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGA 583
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I KE M+D+AF + E+G
Sbjct: 584 LIDGWCKEGMLDKAFSSYFEMTENG 608
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 29/129 (22%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
KGFVPD T+ L++ + ++G + EA E+ +G P V
Sbjct: 709 KGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDR 768
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF- 217
A+++ +K+ ++G P++ T+N+LI+ CK G + + K+ MI+E
Sbjct: 769 AQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL-----------KDKMIEEGIS 817
Query: 218 -RLLCNLVE 225
+ CNL+E
Sbjct: 818 PSIQCNLLE 826
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 17/155 (10%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
VPD+R + +L++ +C +GK+ +A L E+ G + ++N K+G + + E
Sbjct: 294 LVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAE 353
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------H 228
I + + L D + + +E EAF L ++++G +
Sbjct: 354 G------VITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYN 407
Query: 229 KLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
L L G FDDA + M + P+ Y+
Sbjct: 408 TLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYS 442
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 32/138 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+ ++I+ + + G ID+AV + ++ + + + NSL R
Sbjct: 299 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 358
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ PD ++ L++ +C G EA FN + +KM+++G
Sbjct: 359 MVDWNLKPDSYSYNTLLDGYCREGHTSEA-----------FN--------LCDKMLQEGI 399
Query: 172 VPDLETFNSLIETICKSG 189
P + T+N+L++ +C+ G
Sbjct: 400 EPTVLTYNTLLKGLCRVG 417
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M G PD T+ L++ +C + + +A + + + +P + +++ + K
Sbjct: 496 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFK 555
Query: 169 ----------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+G P++ T+ +LI+ CK G L GL A++
Sbjct: 556 SRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIII 615
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
+ + + IDEA L+ +V+ H FP
Sbjct: 616 CSTMVSGLYRLGRIDEANLLMQKMVD--HGFFP 646
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G P+ T+ L++ WC G + +A E+++ G + + MV+ + + G + +
Sbjct: 572 RGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDE 631
Query: 175 LETFNSLIETICKSG-----ELGLCADVNTNKISIPAVSKEFMIDEA---FRLLCNLVED 226
N L++ + G E L +D+ I A S +DE+ F L N+V +
Sbjct: 632 A---NLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADS----LDESCKTFLLPNNIVYN 684
Query: 227 -GHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ DDA FFS + +K P+ Y
Sbjct: 685 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY 718
>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
rugosa]
Length = 414
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 117 LECGYPASLYFF----NILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 172
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C K +A E E+ KG P
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVX 232
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 292
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 293 XKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRL 333
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+ +M+ + PD T+ L+ C G +++A + E+S KG P
Sbjct: 253 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCK 312
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNT 199
+ SA + +MI++ D + +LI +C G +GL D T
Sbjct: 313 EGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDART 372
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I K+ + + +LL + DGH
Sbjct: 373 YTMIINEFCKKGDVWKGSKLLKEMQRDGH 401
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+S + +KPD + T + +I+ K G +D+A E + N + +
Sbjct: 287 LIDEMSX----KGLKPDKI-----TYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVX 337
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 338 YTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 397
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 398 RDGHVPSVVTYNVLMN 413
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI++ D+ +T L++ C G+ +A++ L+E+ G P R+ ++N+ K+G
Sbjct: 325 RMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 384
Query: 171 SV----------------PDLETFNSLI 182
V P + T+N L+
Sbjct: 385 DVWKGSKLLKEMQRDGHVPSVVTYNVLM 412
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFN---KCTAF-NCQQCVLLYNSL---------HVCFV 110
P +I++ + + GL NA+ VF+ KC + + C L N+L H +
Sbjct: 156 PTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQ 215
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+MIR G VPD +I+VNA+C GK+ EA F++++ + G P + + ++N + G
Sbjct: 216 QMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLG 275
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
D+E +++ + E G+ +V T + I K+ +DEA ++L + E+ L
Sbjct: 276 ---DVEAAKGVLKFM---SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA-AL 328
Query: 231 FP---SLGQFDDAFC 242
P + G D +C
Sbjct: 329 VPDERAYGVLIDGYC 343
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M+R+G VP+ T+ L+N C S + AQ +L KG P V
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGN 834
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+A ++ +KMI++G P + T+++LI +CK G++
Sbjct: 835 MDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDI 870
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAK 160
+P+ + I + C +GK+ +A+ F LS KGF P V A
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
++ ++M+++G VP++ T+N+LI +CKS + GL +V T I
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGY 829
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
K +D AF+L ++E+G
Sbjct: 830 CKIGNMDAAFKLKDKMIEEG 849
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 29/142 (20%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
KGFVPD T+ L++ + ++G + EA E+ +G P V
Sbjct: 743 KGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDR 802
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIP 205
A+++ +K+ ++G P++ T+N+LI+ CK G E G+ V T I
Sbjct: 803 AQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALIN 862
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
+ K I+ + +LL +++ G
Sbjct: 863 GLCKHGDIERSMKLLNQMIKAG 884
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
++ +GF + T +++ C GKM EA+E ++ D G +P + + +++ K +
Sbjct: 498 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 557
Query: 172 V----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V P +E +NSLI + KS L GL ++ T
Sbjct: 558 VGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGA 617
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I KE M+D+AF + E+G
Sbjct: 618 LIDGWCKEGMLDKAFSSYFEMTENG 642
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 54/248 (21%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MI 113
+S+++ F K G +D A K + ++ Y+SL +V M
Sbjct: 229 VSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMS 288
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------V 156
KG + T+T+L+ +C KM EA++ L+ + ++ P +
Sbjct: 289 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 348
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS------------- 203
A +++++M++ G +L NSLI CK GE+ V T +
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTH 252
+ +E EAF L ++++G + L L G FDDA + M
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGV 468
Query: 253 PPNRPVYA 260
P+ Y+
Sbjct: 469 APDEVGYS 476
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 72 EEFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
+E + GL+ N V + C + N + L++ LH +KG P+ T+ L
Sbjct: 773 DEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLH-------QKGLFPNVVTYNTL 825
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETIC 186
++ +C G M A + ++ ++G +P V + ++N + K G + ++ N +I+
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885
Query: 187 KSGELGLCADV-------NTNKISIPAVSKEFM 212
S + C V N N++S P K+ M
Sbjct: 886 DSKLIEYCTLVQGGFKTSNYNEMSKPEALKQNM 918
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M G PD T+ L++ +C + + +A + + + +P + +++ + K
Sbjct: 530 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFK 589
Query: 169 ----------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+G P++ T+ +LI+ CK G L GL A++
Sbjct: 590 SRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIII 649
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
+ + + IDEA L+ +V+ H FP
Sbjct: 650 CSTMVSGLYRLGRIDEANLLMQKMVD--HGFFP 680
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G P+ T+ L++ WC G + +A E+++ G + + MV+ + + G + +
Sbjct: 606 RGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDE 665
Query: 175 LETFNSLIETICKSG-----ELGLCADVNTNKISIPAVSKEFMIDEA---FRLLCNLVED 226
N L++ + G E L +D+ I A S +DE+ F L N+V +
Sbjct: 666 A---NLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADS----LDESCKTFLLPNNIVYN 718
Query: 227 -GHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ DDA FFS + +K P+ Y
Sbjct: 719 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY 752
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + + YN+L ++R
Sbjct: 109 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIR 164
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 165 LGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVT 224
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 225 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMS 284
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE ++ AF L+++ +L
Sbjct: 285 RKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRL 325
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 224 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM 283
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSD-------KGFNPPVRS 158
RKG PDK T+T L++ C G + A E +QE L D G RS
Sbjct: 284 SRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRS 343
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 344 VDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDV 378
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+KPD + T + +I+ K G++ +A E + N + ++Y +L
Sbjct: 288 LKPDKI-----TYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGR 342
Query: 106 HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
V +M+R+ G PD T+T+++N +C G + + + L+E+ G P V +
Sbjct: 343 SVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 402
Query: 162 MVN 164
++N
Sbjct: 403 LMN 405
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 59/241 (24%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E M ++ T S +++ K +D AV + C V+ YNS+ F R
Sbjct: 97 VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
M+ +G PD T+T L+ +C S + E L E++ +GF P + +
Sbjct: 157 ARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT 216
Query: 159 AKQMVNKMIKQGSV-------------PDLETFNSLIETICKSGELGLCADVNTNKISIP 205
+++ + K G + P T+NSLI C++G++
Sbjct: 217 YSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDM-------------- 262
Query: 206 AVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPP 254
DEA RLL +V+D F +G+ DDA+ F +M P
Sbjct: 263 --------DEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSP 314
Query: 255 N 255
+
Sbjct: 315 D 315
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 46/228 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T + +I + + G +D A+ + K C V+ Y +L F +M R
Sbjct: 248 TYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQM 307
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
PD T T LV+ C G+M +A E L+E++ +G P V
Sbjct: 308 VANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQV 367
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFM 212
R A+++V +G VP+ T+N L+ C++G L +N+ P +
Sbjct: 368 RKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYA 427
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
I +L L DG DDA F+ EM + + P +A
Sbjct: 428 I-----ILDALCRDGRT--------DDAVQFYEEMIQRGYVPAAATFA 462
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 77/207 (37%), Gaps = 66/207 (31%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
++ + M + LS T + +++ G +++A+E+ + T C + YN +
Sbjct: 301 YELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 360
Query: 107 VCFVRMIRK-----------GFVPDKRTHTILV--------------------------- 128
C +RK GFVP+ T+ ILV
Sbjct: 361 YCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP 420
Query: 129 ----------NAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQM 162
+A C G+ +A +F +E+ +G+ P + A ++
Sbjct: 421 TSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHEL 480
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSG 189
+ +MIK G P T ++++ C++G
Sbjct: 481 LEEMIKYGHTPGPGTCDAVVSAYCRAG 507
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 29/146 (19%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
R + PD T+T LV+ + ++R+A + LQE+ P
Sbjct: 29 RQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGD 88
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNTNK 201
V A+++V +M+ +G + T+++L++ +CK E G V T
Sbjct: 89 RVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYN 148
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG 227
I + +DEA + +V +G
Sbjct: 149 SIITGFCRARRVDEAHGFMEQMVAEG 174
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD TH++L+N C KM +A E E+ B G P
Sbjct: 182 IKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q +PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDL 298
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 109/257 (42%), Gaps = 58/257 (22%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
KPD + T +++I K G +D A+ N ++ CQ V+ +N + +C
Sbjct: 279 KPDVV-----TYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRW 333
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPP 155
MIRKG P T IL+N C G + A + L+++ G +NP
Sbjct: 334 MDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPL 393
Query: 156 VRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV--------- 197
+ + A + ++ M+ +G PD+ T+N+L+ +CK G++ + ++
Sbjct: 394 LHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGC 453
Query: 198 ----NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFC 242
T I +SK D+A +LL + G K + +L G+ D+A
Sbjct: 454 SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIA 513
Query: 243 FFSEMQIKTHPPNRPVY 259
FF +++ PN Y
Sbjct: 514 FFHDLEEMGVKPNAITY 530
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 31/171 (18%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
D +SV P T + I+ G + A+EV ++ C V+ Y L C
Sbjct: 204 DRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGV 263
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
M KG PD T+ +L+N C G++ EA FL + G P V
Sbjct: 264 GQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNII 323
Query: 157 -RS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
RS A++ + +MI++G P + TFN LI +C+ G +G DV
Sbjct: 324 LRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDV 374
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 41/183 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +G +PD T L+ C +GK +A ++ L D G P V + +++ K G
Sbjct: 136 MVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGE 195
Query: 172 V-------------PDLETFNSLIETICKSGELGLC-------------ADVNTNKISIP 205
+ PD+ T+N+++ T+C SG+L DV T I I
Sbjct: 196 IGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIE 255
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTH 252
A KE + +A +LL + + G K P + G+ D+A F + M
Sbjct: 256 ATCKESGVGQAMKLLDEMRDKGCK--PDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGC 313
Query: 253 PPN 255
PN
Sbjct: 314 QPN 316
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 37/175 (21%)
Query: 49 WKTIELMK--PDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
WK +M+ DS +V P T +++I + K G I +A+++ ++ + V+ YN+
Sbjct: 162 WKATRVMEILEDSGAV-PDVITYNVLISGYCKTGEIGSALQLLDR---MSVSPDVVTYNT 217
Query: 105 L--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
+ +C R +++ PD T+TIL+ A C + +A + L E+ DKG
Sbjct: 218 ILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKG 277
Query: 152 FNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGE 190
P V + ++N + K+G + P++ T N ++ ++C +G
Sbjct: 278 CKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGR 332
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S +P T + ++ K G +D AVE+ N+ + C ++ YN++ +
Sbjct: 415 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTD 474
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M KG PD T++ LV GK+ EA F +L + G P + ++
Sbjct: 475 DAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIM 534
Query: 164 NKMIK-QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+ K + +V ++ ++ CK E + I I ++ E + EA LL
Sbjct: 535 LGLCKARQTVRAIDFLAYMVARGCKPTE-------TSYMILIEGLAYEGLAKEALELLNE 587
Query: 223 LVEDG 227
L G
Sbjct: 588 LCSRG 592
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 61/270 (22%)
Query: 49 WKTIE--LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
WK L + SL++ P T +++++ K G + A VF T + V+ Y+S
Sbjct: 286 WKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSS 345
Query: 105 LHV-------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L F MI KG PD ++ IL+ +C + ++ EA++ E+ +G
Sbjct: 346 LMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG 405
Query: 152 FNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG--- 192
P +R A+ + M G++PDL T++ L++ CK G LG
Sbjct: 406 LTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAF 465
Query: 193 ----------LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------- 234
L D+ I I A+ K + +A +L L G L P++
Sbjct: 466 RLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQG--LLPNVQIYTTIIN 523
Query: 235 -----GQFDDAFCFFSEMQIKTHPPNRPVY 259
G D+A F M+ PP+ Y
Sbjct: 524 NLCKEGLLDEALEAFRNMEGDGCPPDEFSY 553
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 45/160 (28%)
Query: 46 LSMWKTIEL--MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
+S+ K +EL + PD TLS++I+ F +D A VF+K
Sbjct: 115 ISLSKQMELAGLSPDIY-----TLSILIDCFSHLQRVDLAFSVFSK-------------- 155
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
MI+ G PD T L+N C GK +A EF + G P V + ++
Sbjct: 156 --------MIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTII 207
Query: 164 N----------------KMIKQGSVPDLETFNSLIETICK 187
N KM + G P++ T+N LI+++CK
Sbjct: 208 NGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCK 247
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + II K G A +F K CQ V+ YN L +C F M
Sbjct: 202 TYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYM 261
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
K PD T+ L+ C+ + +EA L E++ P + + +V+ + K+G V
Sbjct: 262 KAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKV 321
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+ + + +T+ E+G+ DV T + S I EA +L ++ G K
Sbjct: 322 SEAQ---GVFKTMT---EMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCK 372
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F +++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M G PD T+++L+N C KM A E E+ KG
Sbjct: 190 LGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVT 249
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
N V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 57/195 (29%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLLPDLITYN 286
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-------- 177
L+ C G + +A + + E+S KG P + +++ K+G DL+T
Sbjct: 287 TLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEG---DLDTAFEHRKRM 343
Query: 178 -----------FNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMI 213
+ +LI +C+ G +GL D T + I V K+ +
Sbjct: 344 IQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDV 403
Query: 214 DEAFRLLCNLVEDGH 228
+ +LL + DGH
Sbjct: 404 GKGSKLLKEMQXDGH 418
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G +D A E + N + +
Sbjct: 304 LIDEMSM----KGLKPDKI-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T+++N C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 XDGHAPSVVTYNVLMN 430
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 44/216 (20%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FV 110
P+T +I+ K G ++ A+ +F + + + C+ ++N L C F
Sbjct: 893 PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFK 952
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
RM+ +G PD +++TILV+ C +G++ EA + EL G +P
Sbjct: 953 RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQ 1012
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A + N+M +G VPDL T+NSL+ + +G + GL DV T
Sbjct: 1013 RMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYN 1072
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
I S + A+ + N++ DG P++G +
Sbjct: 1073 ALIRGYSLSENPEHAYTVYKNMMVDGCN--PNIGTY 1106
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 62/230 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++ I G+ G ID A E+F RM +G PD T+T
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFR----------------------RMDDEGCGPDLVTYT 301
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
+L++A C++G++ A+E ++ G P + + K+ ++M
Sbjct: 302 VLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEAD 361
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G +PD+ TF L++ +CK+ + G+ +++T I + + I++A
Sbjct: 362 GYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDA 421
Query: 217 FRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPN 255
+LL + G + F G+ A F +M+ K PN
Sbjct: 422 LKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPN 471
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W + MK + T ++++ GK G I E++ + + C+ + YN +
Sbjct: 808 WDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISS 867
Query: 109 -------------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
F ++ F P RT+ L++ G++ EA +E+SD G P
Sbjct: 868 LAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+A Q+ +M+ +G PDL+++ L++ +C +G +
Sbjct: 928 CAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRV 979
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 92/246 (37%), Gaps = 68/246 (27%)
Query: 58 DSLSVFPQTLSLI--IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
+S+ V P + I I+ FGK G AVE F K A K
Sbjct: 429 ESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKA----------------------K 466
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G VP+ + + G++REA+ L + G P V A
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEA 526
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
++++MI+ G PD+ NSLI+++ K+G ++ L V T +
Sbjct: 527 VNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEMQIKTHP 253
+ KE + +A L +++ K P+ F+ D FC FS+M +
Sbjct: 587 LGKEGRVQKAIELFESMIX--KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK 644
Query: 254 PNRPVY 259
P+ Y
Sbjct: 645 PDVLTY 650
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M + GFV + ++ L++ SG EA E + + +G P +++ + M+ G
Sbjct: 182 KMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSAL---MVALG 238
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--- 227
D E L++ + +LGL +V T I I + + IDEA+ + + ++G
Sbjct: 239 KKRDSEMVMVLLKEM---EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGP 295
Query: 228 -----HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
L +L GQ ++A F +M+ H P++ +Y
Sbjct: 296 DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIY 335
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 66/225 (29%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+ PDS+ T +++++ + K G +D AV + ++ MIR
Sbjct: 503 LAPDSV-----TYNMMMKCYSKVGQVDEAVNLLSE----------------------MIR 535
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-- 172
G PD L+++ +G++ EA + + D +P V + +++ + K+G V
Sbjct: 536 NGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQK 595
Query: 173 --------------PDLETFNSLIETICKSGELGLC-------------ADVNTNKISIP 205
P+ +FN+L++ CK+ E+ L DV T I
Sbjct: 596 AIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIY 655
Query: 206 AVSKEFMIDEAFRLLCNLVEDGH-------KLFPSL---GQFDDA 240
+ KE ++ AF L + H L P L GQ DA
Sbjct: 656 GLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDA 700
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 44/209 (21%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKR 122
+ G A+EV+ + + + + Y++L V + M G P+
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKM 166
T TI + +GK+ EA E + + D+G P + +AK++ KM
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323
Query: 167 IKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMI 213
G PD + +L++ G+L G DV T I + + K
Sbjct: 324 KANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDF 383
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
DEAF + + G + P+L ++ C
Sbjct: 384 DEAFATFDVMRKQG--ILPNLHTYNTLIC 410
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 47/214 (21%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W+ + MK LS T + ++ GK G + A+E+F C + +N+L C
Sbjct: 562 WQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDC 621
Query: 109 F---------VRMIRKGFV----PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F ++M K V PD T+ ++ K+ A F +L
Sbjct: 622 FCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL-------- 673
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
K+ PD T +L+ + K G++G + ISI +++FM
Sbjct: 674 ------------KKSMHPDHVTICTLLPGLVKCGQIG-------DAISI---ARDFMYQV 711
Query: 216 AFRLLCNLVED--GHKLFPSLGQFDDAFCFFSEM 247
FR+ + ED G L + + D A F E+
Sbjct: 712 RFRVNRSFWEDLMGGTLVEA--EMDKAIIFAEEL 743
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 48/227 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ S +I F + G +D+A E + F ++Y + F R M
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEM 360
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G +PD T+ L+N C ++ +A+E L E+ ++G P + + +++ + G++
Sbjct: 361 VAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNI 420
Query: 173 ----------------PDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKEFM 212
PD+ T+N+LI+ +C+ G+LG L D+++ +I V+ +
Sbjct: 421 EKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSIL 480
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
ID C GQ D+AF F EM K PN Y
Sbjct: 481 IDSH----C-----------EKGQVDNAFAFLDEMVNKGIVPNIMTY 512
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 103/283 (36%), Gaps = 94/283 (33%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIR 114
+++I F + GL+ A+ V ++ AF C V+ YN+L +C R M
Sbjct: 338 TMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKE 397
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS--- 171
+G PD T T L++ +C G + +A +F +SD+ P + + +++ M +QG
Sbjct: 398 RGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGK 457
Query: 172 ------------------------------------------------VPDLETFNSLIE 183
VP++ T+NS+I+
Sbjct: 458 ANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIK 517
Query: 184 TICKSGELG-------------LCADVNTNKISIPAVSKEFMIDEAFRLL---------- 220
C+SG + + D+ T I KE + EAF LL
Sbjct: 518 GYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQP 577
Query: 221 ----CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
N++ G F G +A + +M + P+R Y
Sbjct: 578 DAVTYNMIISG---FSVHGNMQEADWVYKKMGARGIEPDRYTY 617
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 43/135 (31%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116
S +FP T S++I+ + G +DNA ++ M+ KG
Sbjct: 467 SREIFPNHVTYSILIDSHCEKGQVDNAFAFLDE----------------------MVNKG 504
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
VP+ T+ ++ +C SG + + Q+FL P +R K M PDL
Sbjct: 505 IVPNIMTYNSIIKGYCRSGNVSKGQQFL---------PKMRHDKVM----------PDLI 545
Query: 177 TFNSLIETICKSGEL 191
T+N+LI K G++
Sbjct: 546 TYNTLIHGYVKEGKM 560
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 100 LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
L + + M ++ PD TH ++V+A +G + A + + KG P + +
Sbjct: 173 LQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTY 232
Query: 160 KQMVNKMIKQGS----------------VPDLETFNSLIETICKSGEL 191
++ +++ G PD+ +FN LI C++GEL
Sbjct: 233 NSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGEL 280
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +++ ++G D A EVF A V +N L F R M
Sbjct: 231 TYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEM 290
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ PD + + L+ + G+M A E+L+E+ + G P +
Sbjct: 291 RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLM 350
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ ++M+ G +PD+ T+N+L+ +CK L
Sbjct: 351 LEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 44/216 (20%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FV 110
P+T +I+ K G ++ A+ +F + + + C+ ++N L C F
Sbjct: 893 PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFK 952
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
RM+ +G PD +++TILV+ C +G++ EA + EL G +P
Sbjct: 953 RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQ 1012
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A + N+M +G VPDL T+NSL+ + +G + GL DV T
Sbjct: 1013 RMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYN 1072
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
I S + A+ + N++ DG P++G +
Sbjct: 1073 ALIRGYSLSENPEHAYTVYKNMMVDGCN--PNIGTY 1106
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 62/230 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++ I G+ G ID A E+F RM +G PD T+T
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFR----------------------RMDDEGCGPDLVTYT 301
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
+L++A C++G++ A+E ++ G P + + K+ ++M
Sbjct: 302 VLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEAD 361
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G +PD+ TF L++ +CK+ + G+ +++T I + + I++A
Sbjct: 362 GYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDA 421
Query: 217 FRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPN 255
+LL + G + F G+ A F +M+ K PN
Sbjct: 422 LKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPN 471
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W + MK + T ++++ GK G I E++ + + C+ + YN +
Sbjct: 808 WDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISS 867
Query: 109 -------------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
F ++ F P RT+ L++ G++ EA +E+SD G P
Sbjct: 868 LAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+A Q+ +M+ +G PDL+++ L++ +C +G +
Sbjct: 928 CAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRV 979
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 94/246 (38%), Gaps = 68/246 (27%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
+S+ V P T ++ I+ FGK G AVE F K A K
Sbjct: 429 ESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKA----------------------K 466
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G VP+ + + G++REA+ L + G P V A
Sbjct: 467 GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEA 526
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
++++MI+ G PD+ NSLI+++ K+G ++ L V T +
Sbjct: 527 VNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEMQIKTHP 253
+ KE + +A L +++E K P+ F+ D FC FS+M +
Sbjct: 587 LGKEGRVQKAIELFESMIE--KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK 644
Query: 254 PNRPVY 259
P+ Y
Sbjct: 645 PDVLTY 650
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M + GFV + ++ L++ SG EA E + + +G P +++ + M+ G
Sbjct: 182 KMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSAL---MVALG 238
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--- 227
D E L++ + +LGL +V T I I + + IDEA+ + + ++G
Sbjct: 239 KKRDSEMVMVLLKEM---EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGP 295
Query: 228 -----HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
L +L GQ ++A F +M+ H P++ +Y
Sbjct: 296 DLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIY 335
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 66/225 (29%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+ PDS+ T +++++ + K G +D AV + ++ MIR
Sbjct: 503 LAPDSV-----TYNMMMKCYSKVGQVDEAVNLLSE----------------------MIR 535
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-- 172
G PD L+++ +G++ EA + + D +P V + +++ + K+G V
Sbjct: 536 NGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQK 595
Query: 173 --------------PDLETFNSLIETICKSGELGLC-------------ADVNTNKISIP 205
P+ +FN+L++ CK+ E+ L DV T I
Sbjct: 596 AIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIY 655
Query: 206 AVSKEFMIDEAFRLLCNLVEDGH-------KLFPSL---GQFDDA 240
+ KE ++ AF L + H L P L GQ DA
Sbjct: 656 GLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKCGQIGDA 700
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 44/209 (21%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKR 122
+ G A+EV+ + + + + Y++L V + M G P+
Sbjct: 204 QSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVY 263
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKM 166
T TI + +GK+ EA E + + D+G P + +AK++ KM
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323
Query: 167 IKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMI 213
G PD + +L++ G+L G DV T I + + K
Sbjct: 324 KANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDF 383
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
DEAF + + G + P+L ++ C
Sbjct: 384 DEAFATFDVMRKQG--ILPNLHTYNTLIC 410
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 47/214 (21%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W+ + MK LS T + ++ GK G + A+E+F C + +N+L C
Sbjct: 562 WQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDC 621
Query: 109 F---------VRMIRKGFV----PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F ++M K V PD T+ ++ K+ A F +L
Sbjct: 622 FCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL-------- 673
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
K+ PD T +L+ + K G++G + ISI +++FM
Sbjct: 674 ------------KKSMHPDHVTICTLLPGLVKCGQIG-------DAISI---ARDFMYQV 711
Query: 216 AFRLLCNLVED--GHKLFPSLGQFDDAFCFFSEM 247
FR+ + ED G L + + D A F E+
Sbjct: 712 RFRVNRSFWEDLMGGTLVEA--EMDKAIIFAEEL 743
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A + LYN MI +G PDK T+ L++ C G++REAQ+ + +
Sbjct: 40 CKATRIDKAKQLYNE-------MILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHK 92
Query: 150 KGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL-- 191
G P + + +++ + KQG + PDL +N L++ +CKSG L
Sbjct: 93 NGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKD 152
Query: 192 -----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
GL +V I + KE ++DEA N+ EDG
Sbjct: 153 ARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDG 199
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 47/178 (26%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F MI KG+ PD + IL+N +C + + + AKQ+ N+MI
Sbjct: 17 FDVMITKGYKPDVFCYNILINGYCKATR-------------------IDKAKQLYNEMIL 57
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
QG PD T+N+LI +C+ G L G D+ I + + K+ + +
Sbjct: 58 QGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGK 117
Query: 216 AFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
AFRL + K P L G DA FSE+ +K PN +Y
Sbjct: 118 AFRLFRAMQSSSLK--PDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYT 173
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M PD + ILV+A C SG +++A+E EL KG P V+ ++N + K
Sbjct: 122 FRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCK 181
Query: 169 QGSVPD-LETFNSLIETICKSGEL 191
+G + + LE F ++ E C E
Sbjct: 182 EGLLDEALEAFRNMEEDGCPPDEF 205
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ +N+L +++
Sbjct: 128 LECGYPASLYFF----NILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIK 183
Query: 112 M--IRKGF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M + +GF PD T+++L+N C KM EA E E+ +KG P
Sbjct: 184 MGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
+ A ++ +++ QG PDL T+N+LI CK G+L
Sbjct: 244 FTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMS 303
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE ++ AF ++E+ +L
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRL 344
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEF 74
+ A + NI+ H E + RL + ++ W +KP +S + ++ +
Sbjct: 132 YPASLYFFNILMHRFCKEGEI-RLAQLVFDAITKWG----LKPSVVS-----FNTLMNGY 181
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDK 121
K G++D + N A Q V Y+ L H F M+ KG VP+
Sbjct: 182 IKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNG 241
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T T L++ C +GK+ A E +++ +G +P ++ + ++++
Sbjct: 242 VTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDE 301
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL 191
M +G PD T+ +LI+ CK G+L
Sbjct: 302 MSMKGLKPDKITYTTLIDGSCKEGDL 327
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 35/164 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + ++ YN+L F + M
Sbjct: 243 TFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS 158
KG PDK T+T L++ C G + A E+ +++ ++ G RS
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
A++M+ +M+ G PD T+ ++ CK+G DVNT
Sbjct: 363 VDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNG------DVNTG 400
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G ++ A E K N + ++
Sbjct: 298 LIDEMSM----KGLKPDKI-----TYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVV 348
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+TI++N +C +G + + L+E+
Sbjct: 349 YTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQ 408
Query: 149 DKGFNPPV 156
G P V
Sbjct: 409 RDGHVPSV 416
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 92/239 (38%), Gaps = 34/239 (14%)
Query: 48 MWKTI-ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWK I E+++ V P LS +I G +I A+ +F + A CQ YNS+
Sbjct: 142 MWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMI 201
Query: 106 ------------HVCFVRMIRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M +G PD T++ L++A+C G+ A L E+ + G
Sbjct: 202 IMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGM 261
Query: 153 NPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
P + +++ K +V L F + C+ DV T I + K
Sbjct: 262 QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRP-------DVFTYTELIRGLGKAG 314
Query: 212 MIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
IDEA+ + +G K G+ DD F EM + PN Y
Sbjct: 315 RIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTY 373
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 51/219 (23%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
KPD++ ++ +I GK G +D+ +++F + +C V+ YN++
Sbjct: 332 KPDTV-----VMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSR 386
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F RM G P T++IL++ +C + ++ +A L+E+ +KGF PP +A
Sbjct: 387 VSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF-PPCPAA-- 443
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
+ SLI+ + K+ L ++ KE + R+
Sbjct: 444 ----------------YCSLIDALGKAKRYDLACELFQE-------LKENCGSSSARVYA 480
Query: 222 NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
++ K G+ DDA F EM PN VYA
Sbjct: 481 VMI----KHLGKAGRLDDAINLFDEMSKLGCTPN--VYA 513
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 29/162 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+K + S + +++I+ GK G +D+A+ +F++ + C V YN+L R
Sbjct: 467 LKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACM 526
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
M G +PD ++ I++N +G A E L + + P S
Sbjct: 527 LDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNT 586
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +++ +M G DL T++S++E I K
Sbjct: 587 VLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGK 628
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 31/176 (17%)
Query: 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
+SE+ W E MK +S P T S++I+ F K I+ A+ + + C Y
Sbjct: 387 VSEVFSW--FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAY 444
Query: 103 NSLHVCFVRMIRKGFV-------------PDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
SL + R R + +++ +G++ +A E+S
Sbjct: 445 CSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSK 504
Query: 150 KGFNPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSG 189
G P V + +++ KM + G +PD+ ++N ++ + K+G
Sbjct: 505 LGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTG 560
>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
citrodora]
Length = 380
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F +++++ F K G I A V N T + + V+ +N+L ++R
Sbjct: 126 LECGYPASLYFF----NILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIR 181
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E E+ DKG P
Sbjct: 182 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVT 241
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK GEL D+
Sbjct: 242 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDL 296
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G + A VF+ T + + V+ +N+L ++R
Sbjct: 128 LECGYPASLYFF----NILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIR 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM EA E E+ D G P
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +++ QG PDL T+N+LI +CK G+L D+
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDL 298
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S++I K +D A E+FN+ M+ G VP+ T T
Sbjct: 208 TYSVLINGLCKESKMDEANELFNE----------------------MLDNGLVPNGVTFT 245
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L++ C +G++ A E ++L +GF+P ++ A+ ++++M +
Sbjct: 246 TLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMK 305
Query: 170 GSVPDLETFNSLIETICKSGEL 191
PD T+ +LI+ CK G+L
Sbjct: 306 ELKPDKITYTTLIDGSCKEGDL 327
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
K PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 SMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ M+ G PD T+ +I CK G++
Sbjct: 363 VDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDV 397
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G ++ A E + N + +
Sbjct: 298 LIDEMSMKE----LKPDKI-----TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVA 348
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R G PD T+T+++N +C G ++ + L+E+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMX 408
Query: 149 DKGFNPPV 156
G P V
Sbjct: 409 RDGHVPCV 416
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 33/169 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 115 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A E E+ KG P
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 230
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 231 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDL 279
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS 158
K PDK T+T L++ C G + A E + + + G RS
Sbjct: 290 SMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRS 349
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 350 VDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDV 384
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G +D+A E + N + +
Sbjct: 285 LIDEMSM----KELKPDKI-----TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVA 335
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 336 YTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQ 395
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 396 RDGHVPSVVTYNVLMN 411
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 57/250 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T +++I F G +D A+ F++ C V+ YN+L C +R M
Sbjct: 207 TYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSM 266
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
KG P+ ++ +++N C G+M+E L E++ +G +N ++
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNF 326
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A M +M++ G P + T+ SLI ++CK+G + GLC + T
Sbjct: 327 HQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTL 386
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
+ S++ ++EA+R+L ++++G PS+ G+ DA +M+ K
Sbjct: 387 VDGFSQKGYMNEAYRVLKEMIDNGFS--PSVVTYNALINGHCIAGKMVDAIAVLEDMKEK 444
Query: 251 THPPNRPVYA 260
P+ Y+
Sbjct: 445 GLTPDVVSYS 454
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 57/242 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120
+ +S ++ E K G + V + C N Q ++++ M+R G P
Sbjct: 292 KEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMH-------AEMLRHGLSPS 344
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVN 164
T+T L+++ C +G M A EFL ++ +G P R+ A +++
Sbjct: 345 VITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLK 404
Query: 165 KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEF 211
+MI G P + T+N+LI C +G++ GL DV + + + +
Sbjct: 405 EMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSY 464
Query: 212 MIDEAFRLLCNLVEDGHK----LFPSLGQFDDAFC----------FFSEMQIKTHPPNRP 257
+DEA R+ +V G K + SL Q FC F EM PP+
Sbjct: 465 DVDEALRVKRKMVAKGIKPDTITYSSLIQ---GFCEQRRTKEACDLFDEMLRVGLPPDEF 521
Query: 258 VY 259
Y
Sbjct: 522 TY 523
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 40/209 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E MK L+ + S ++ F + +D A+ V K A + + Y+SL
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCE 497
Query: 106 -----HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
C F M+R G PD+ T+T L+NA+C G +++A + E+ +KG P V
Sbjct: 498 QRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVT 557
Query: 157 --------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
R AK+++ K+ + SVP T+++LIE C+++ +
Sbjct: 558 YSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIEN---------CSNIEFKSV 608
Query: 203 S--IPAVSKEFMIDEAFRLLCNLVEDGHK 229
I + M+ EA ++ +++E HK
Sbjct: 609 VSLIKGFCMKGMMTEADQVFESMLEKNHK 637
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 111/285 (38%), Gaps = 64/285 (22%)
Query: 31 AERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
A +TL+ + +L+ S+ +T +L S SVF L+++ + + LID A+ + +
Sbjct: 107 AAKTLDDEDASLVFR-SLQETYDLCNSTS-SVF----DLVVKSYSRLCLIDKALSIVHLS 160
Query: 91 TAFNCQQCVLLYNSLHVCFVR--------------MIRKGFVPDKRTHTILVNAWCSSGK 136
A VL YN++ +R M++ P+ T+ IL+ +C +G
Sbjct: 161 QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGN 220
Query: 137 MREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQGSVPDLETFNS 180
+ A F + KG P V + +++ M +G P+L ++N
Sbjct: 221 LDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNV 280
Query: 181 LIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+I +C+ G + G D T I KE +A + ++
Sbjct: 281 VINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-- 338
Query: 228 HKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
H L PS+ G + A F +M+++ PN Y
Sbjct: 339 HGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTY 383
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ K PD + ++++ C G +R+A +E+ GF + +V + K
Sbjct: 628 FESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHK 687
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+G V +L NS+I + +S EL ++ K+ + +E +D +L + +DG
Sbjct: 688 EGKVNEL---NSVIANVLRSCEL---SEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 50/230 (21%)
Query: 47 SMW----KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
S+W + +E P SL F ++++ F K G + A VF++ T + + V+ +
Sbjct: 119 SVWGFYKEILECGYPASLYFF----NILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSF 174
Query: 103 NSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
N+L ++R M G PD T+++L+N C KM +A E E+
Sbjct: 175 NTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIG 234
Query: 150 KGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-- 191
G P + A + +M++QG PDL T+N+LI +CK G+L
Sbjct: 235 NGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQ 294
Query: 192 -----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE ++ AF+ ++++ +L
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRL 344
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 32/188 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+ +E +GL+ N V F +C+ + + + M+R+GF PD T+ L+
Sbjct: 228 LFDEMIGNGLVPNGV-TFTTLIDGHCKTGSI--DLAMEAYKEMLRQGFSPDLITYNTLIY 284
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
C G +++AQ+ + E+S KG P + +A + +MIK+
Sbjct: 285 GLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRL 344
Query: 174 DLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
D + +LI +C+ G+ +GL D T + I K+ + +LL
Sbjct: 345 DDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLL 404
Query: 221 CNLVEDGH 228
+ DGH
Sbjct: 405 KEMQRDGH 412
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G ++ A + + N + +
Sbjct: 298 LIDEMSM----KGLKPDKI-----TYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVA 348
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L R M+ G PD T+T+++N +C G ++ + L+E+
Sbjct: 349 YTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQ 408
Query: 149 DKGFNPPV 156
G P V
Sbjct: 409 RDGHVPCV 416
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 32/170 (18%)
Query: 55 MKPDSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
++ SL V P T+ S +I+ K G ID A VF+ A V+ YN+L
Sbjct: 349 LRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKA 408
Query: 106 ------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--- 156
H M+ KG PD T+++LV+A+C + ++ EA E L ++ +G P V
Sbjct: 409 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 468
Query: 157 -----------RSAK--QMVNKM-IKQGSVPDLETFNSLIETICKSGELG 192
RS + QM + M +K G VPD T+ +LI+ + ++G G
Sbjct: 469 NSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAG 518
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 43/180 (23%)
Query: 34 TLNRLNLTLISELSMWKTIELMKP---DSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFN 88
T N L + M + ELM+ SL V P T+ S +I+ K G D A VF+
Sbjct: 819 TYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFD 878
Query: 89 KCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
MI G+VP+ T+ +L+N C + KM A ++ +
Sbjct: 879 D----------------------MIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMV 916
Query: 149 DKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
DKG P V + A ++++ M +G P++ TFNS+I+ +CKS + G
Sbjct: 917 DKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSG 976
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ RM+ VPDK T IL+ C +G +A +E+ K P V + +++ + K
Sbjct: 555 YNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 614
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL-------------GLCADVNT 199
G V P++ T+N+L+ +CKSG + G D T
Sbjct: 615 AGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSIT 674
Query: 200 NKISIPAVSKEFMIDEAFRLLC--------------NLVEDGHKLFPSLGQFDDAFCFFS 245
+ A+ + D+A +L+ N++ DG L+ S GQ + A
Sbjct: 675 YGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDG--LWKS-GQTEQAITVLE 731
Query: 246 EMQIKTHPPNRPVY 259
EM K H P+ Y
Sbjct: 732 EMVGKGHHPDVVTY 745
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 26/150 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S++++ F K +D A+E+ + + C V+ +NS+ +C F M
Sbjct: 432 TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDM 491
Query: 113 -IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK---GFN---------PPVRSA 159
++ G VPDK T+ L++ +G+ +A+ L + D FN V A
Sbjct: 492 ALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRA 551
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG 189
Q+ N+M++ VPD TFN LI CK+G
Sbjct: 552 LQVYNRMLELELVPDKVTFNILIAGACKAG 581
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 101/263 (38%), Gaps = 62/263 (23%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK- 115
+L V P T + ++ K G I+ A + + + C + Y SL R R
Sbjct: 630 NLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 689
Query: 116 ------------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
G+ PD T+ ILV+ SG+ +A L+E+ KG +P V + ++
Sbjct: 690 DALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLI 749
Query: 164 NKMIKQGS-------------------VPDLETFNSLIETICKSGELGLC---------- 194
+ + K G VP++ T++ LI +CK G +
Sbjct: 750 DSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRK 809
Query: 195 -ADVNTNKIS----IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQ 236
DV N I+ + + K+ M+ EA L+ +L + ++ P GQ
Sbjct: 810 SCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQ 869
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
D+A F +M + PN Y
Sbjct: 870 TDEACNVFDDMIAGGYVPNVVTY 892
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 44/192 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M R G P T+ ++N C S ++ E +EL ++G +P V + +++ + K G
Sbjct: 207 MARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGD 266
Query: 172 ----------------VPDLETFNSLIETICKSGELGLC-----------ADVNTNKIS- 203
VP++ T++ LI +CK G + DV N I+
Sbjct: 267 LEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 326
Query: 204 ---IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEM 247
+ + K+ M EA L+ +L + ++ P GQ D+A F +M
Sbjct: 327 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDM 386
Query: 248 QIKTHPPNRPVY 259
+ PN Y
Sbjct: 387 IAGGYVPNVITY 398
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 23/147 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S++++ F K +D A+E+ + + C V+ +NS+ +C F M
Sbjct: 926 TYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDM 985
Query: 113 -IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK---GFNPPVRSAKQM------ 162
++ G PDK T+ L++ +G +A+ L + D FN + ++
Sbjct: 986 TLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRA 1045
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSG 189
+++M++ VPD TFN LI CK+G
Sbjct: 1046 LHRMLELELVPDKVTFNILIAGACKAG 1072
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 19/81 (23%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ VPDK T IL+ C +G +A +E M+ +
Sbjct: 1048 RMLELELVPDKVTFNILIAGACKAGNFEQASALFEE-------------------MVAKN 1088
Query: 171 SVPDLETFNSLIETICKSGEL 191
PD+ TF +LI+ +CK+G++
Sbjct: 1089 LQPDVMTFGALIDGLCKAGQV 1109
>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 418
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E +E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 34/189 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
+ EE +GL+ N V F +C+ V L + + +M+ + PD T+ L+
Sbjct: 228 LFEEMLDNGLVPNGV-TFTTLIDGHCKNGRVXLAMEI---YKQMLSQSLSPDLITYNTLI 283
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSV 172
C G +++AQ+ + E+S KG P + +A +MIK+
Sbjct: 284 YGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIR 343
Query: 173 PDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRL 219
D + +LI +C+ G +GL ++ T + I K+ + +L
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKL 403
Query: 220 LCNLVEDGH 228
L + DG+
Sbjct: 404 LKEMQRDGY 412
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C K+ +A E E+ KG P
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I K+ +D AF ++++ +L
Sbjct: 310 MKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRL 350
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 309 SMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQS 368
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 369 VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G +D A E + N + ++
Sbjct: 304 LIDEMSM----KGLKPDKI-----TYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVV 354
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L R M+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 107/263 (40%), Gaps = 53/263 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K ++ MK T +++I F G +D A+ V ++ NC+ V+ Y L
Sbjct: 167 KVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEAT 226
Query: 110 V-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----- 151
+ M+ +G PD+ T+ ++VN C G + A EFL +S G
Sbjct: 227 ITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGV 286
Query: 152 --FNPPVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSG----------- 189
+N +R +++++ M+ +G P+ T+++LI +C+ G
Sbjct: 287 STYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKV 346
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH--------KLFPSL---GQ 236
E L D + I A+ +E +D A L +++ GH + SL G
Sbjct: 347 MKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGN 406
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
D+A F ++ PPN Y
Sbjct: 407 ADEALNIFEKLGEVGCPPNAGSY 429
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 40/191 (20%)
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------- 158
+ ++ K PD + +++ +C + ++ A + L + +GF P V +
Sbjct: 135 MEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGR 194
Query: 159 -----AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTN 200
A +++++++K P + T+ LIE G + GL D T
Sbjct: 195 GRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTY 254
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQI 249
+ + + KE M+D AF L + ++G + L L G+++ S+M +
Sbjct: 255 NVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLV 314
Query: 250 KTHPPNRPVYA 260
K PN Y+
Sbjct: 315 KGCEPNPITYS 325
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 28/144 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------FNPPVRS------- 158
M+ +G+ PD T L+ + + K+ +A + ++ L G +N +
Sbjct: 103 MVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRV 162
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN-------------TNKIS 203
A +++++M K+G PD+ T+N LI C G L L V T I
Sbjct: 163 DHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTIL 222
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I A + IDEA +LL ++ G
Sbjct: 223 IEATITQGGIDEAMKLLDEMLSRG 246
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MI G +PD ++ ++ + C +G EA ++L + G P S
Sbjct: 382 MISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGD 441
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A M+ +M+ G PD T+NSLI +C+ G
Sbjct: 442 KIRALGMILEMLSNGIDPDEITYNSLISCLCRDG 475
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 45/174 (25%)
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGS 171
+N C S K E+ FLQ + ++G+ P V A Q++ + K G
Sbjct: 84 LNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHGK 143
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
PD+ +N++I CK+ + G DV T I I +D A R
Sbjct: 144 -PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALR 202
Query: 219 LLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
++ L++D K P++ G D+A EM + P+R Y
Sbjct: 203 VMDQLLKDNCK--PTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTY 254
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 32/159 (20%)
Query: 63 FPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----------- 109
P LS I+ K+G D A+ +F K C YN+L
Sbjct: 388 LPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALG 447
Query: 110 --VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL-SDKGFNPPVRS-------- 158
+ M+ G PD+ T+ L++ C G + +A E L ++ + P V S
Sbjct: 448 MILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGL 507
Query: 159 --------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A +++ M+ +G +P+ T+ LI+ I +G
Sbjct: 508 CKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAG 546
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 57/266 (21%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHV 107
W+ ++ +K S+ +++I+ + K +I+ AVE F F+C+ V YN+ LHV
Sbjct: 111 WQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHV 170
Query: 108 ------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
+ RM++ +P+ T +IL++ C SGK + A + E++ + P
Sbjct: 171 MVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPN 230
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCA 195
A ++ M G +PD T+N+L+ CK G LGL
Sbjct: 231 KITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLK 290
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG---------HKLFPSL------------ 234
++ + +ID FR ED H + P +
Sbjct: 291 YFEKDRYVLDKQGYSCLIDGLFR--ARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSK 348
Query: 235 -GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+F DA +EM + P+ Y
Sbjct: 349 AGKFKDALRLLNEMTERGLVPDTHCY 374
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 66/275 (24%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
++ + D + Q S +I+ + ++A + K T N + V+LY + +
Sbjct: 289 LKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSK 348
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-FNPP-- 155
M +G VPD + L+ +C G + EA+ E+S F+
Sbjct: 349 AGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACT 408
Query: 156 -------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG------------E 190
V A+Q+ N+M K G P + TFN+LI+ CK+G E
Sbjct: 409 YTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKME 468
Query: 191 LGL--------------CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK------- 229
+G D + + + + +I +A+ +L L + G
Sbjct: 469 IGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYN 528
Query: 230 ----LFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
F G + AF F E+Q+K P+ Y
Sbjct: 529 ILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYG 563
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
+++ GF P+ T+ IL++ +C +G + A + +EL KG +P + ++N
Sbjct: 512 LMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLS 571
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI-SIPAVSKEF 211
+++K G P E + S + C+ ++ L + + SIP E
Sbjct: 572 ANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEV 631
Query: 212 M--IDEAF 217
+ ++E F
Sbjct: 632 LKSVEENF 639
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 59/215 (27%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E+ K D S T +++I + GL+ +A ++FN+ C V+ +N+L
Sbjct: 395 LEISKNDCFSS-ACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCK 453
Query: 106 -------HVCFVRM-----------IRKGF--VPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+ F +M + +G V D + +V C SG + +A L
Sbjct: 454 AGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILM 513
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+L+D GF P++ T+N LI CK+G + G
Sbjct: 514 QLTDSGF-------------------APNIITYNILIHGFCKAGNINGAFKLFKELQLKG 554
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
L D T I + ++AF +L ++++G
Sbjct: 555 LSPDSVTYGTLINGLLSANREEDAFTVLDQILKNG 589
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 121/290 (41%), Gaps = 65/290 (22%)
Query: 32 ERTLNRLNLTLISELSMWKTIELMKP--DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVF 87
ERT N + L K E++K D SV P T S +I F K G +D A E+
Sbjct: 41 ERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEIL 100
Query: 88 NK-CTAFNCQQCVLLYNSLHVCFVR---------MIR----KGFVPDKRTHTILVNAWCS 133
+ T V+ Y S+ R M+R KG PDK T + L+ WC+
Sbjct: 101 REMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCN 160
Query: 134 SGKMREAQEFLQE-LSDKGFNPPVRSAKQMVNKMIKQGS----------------VPDLE 176
+ K+ EA + +E L+ + P V + +++ K G+ VP++
Sbjct: 161 ARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV 220
Query: 177 TFNSLIETICKSGELGLCADV---NTNKISIPAV-----------------SKEFMIDEA 216
T++SL+ +CK+G+L D+ T+K +P V + ++DE
Sbjct: 221 TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEM 280
Query: 217 FRLLC-------NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C N + DG + LG+ ++A F EM K+ P+R Y
Sbjct: 281 TATCCPPDTVSYNALLDG---YCRLGRIEEAKQLFKEMATKSCLPDRITY 327
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 50/217 (23%)
Query: 77 HGL-----IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR-------------KGFV 118
HGL +D A + ++ TA C + YN+L + R+ R K +
Sbjct: 262 HGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCL 321
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQEL-SDKGFNPPVRS----------------AKQ 161
PD+ T+T LV +C++ ++ EA+ L+ + + G +P V + A +
Sbjct: 322 PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 381
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS-------------IPAVS 208
+ +MI + P+ T++SLI+ +CK+G + +V N ++ I A+
Sbjct: 382 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALC 441
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFS 245
+ +DEA++LL + H L P + + FS
Sbjct: 442 RLGDMDEAWKLLVAMA--AHGLEPGMVTYTTLLEGFS 476
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 34/165 (20%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
KPD + T + +I+ F K G ++ A+++ C V+ Y+SL +C
Sbjct: 181 KPDVV-----TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDL 235
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------- 155
F RM KG VP+ T+T L++ C++ K+ A+ + E++ P
Sbjct: 236 DQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNAL 295
Query: 156 ---------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ AKQ+ +M + +PD T+ L+ C + L
Sbjct: 296 LDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRL 340
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-KGFNPPVRSAKQMVNKM 166
CF +M R+ P++RT+ ++VN C + +A E L+E+ D K P + + ++N
Sbjct: 29 CFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGF 87
Query: 167 IKQGSV-----------------PDLETFNSLIETICKSGEL 191
KQG + PD+ T+ S+++ +C+ G++
Sbjct: 88 CKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKM 129
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
W I+LMK + + T S ++ + + GL AV FN+ + C ++ ++ +
Sbjct: 198 WHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISS 257
Query: 107 VC----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+C F ++ F PD +T LV+ WC +G + +A+E ++ G P V
Sbjct: 258 LCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNV 317
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG----------- 189
+ A + ++MI G P+ TFNSL+ K+G
Sbjct: 318 YTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQ 377
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
LG AD + I + ++ ++EA ++L +V+ G
Sbjct: 378 MKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKG 417
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 34/181 (18%)
Query: 47 SMWKTI-ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
S +K I E P SL F +++++ F K G I A VF+ T + + V+ +N+L
Sbjct: 122 SFYKEILECRYPASLYFF----NILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTL 177
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+++ M G PD T+++L+N C KM EA + E+ D+G
Sbjct: 178 MNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGL 237
Query: 153 NP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
P + A ++ +M+ QG PD T+N+LI +CK G+L D
Sbjct: 238 VPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKD 297
Query: 197 V 197
+
Sbjct: 298 L 298
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 16/102 (15%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------- 154
H F M+ +G VP+ T T L++ C +GK+ A E +++ +GF+P
Sbjct: 226 HKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYG 285
Query: 155 -----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ AK + ++M +G PD T+ +LI+ CK G+L
Sbjct: 286 LCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDL 327
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + YN+L + M
Sbjct: 243 TFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ ++ CK+G++
Sbjct: 363 VDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDV 397
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------FVRMIRK- 115
T +I+ KHG +D A E+ ++ Q V +YNS+ +C ++++++
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
G PD T+T +++A+C G + +A + LQE+ D+G P V
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+++ M+++G VPD T+N+L++ C + G+ D NT I
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNIL 649
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGH 228
I K + EA+ L ++E G+
Sbjct: 650 IKGHCKARNLKEAWFLYKEMIEKGY 674
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 34/172 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F MI +G PD+ T+T L++ +C +G+M A E+ G P +
Sbjct: 421 FHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCK 480
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+A +++++M K+G ++ +NS++ ICK+G + G+ D T
Sbjct: 481 HGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAIT 540
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
I A + ID+A +LL +++ G L P++ F+ + FC ++
Sbjct: 541 YTTVIDAYCRLGDIDKAHKLLQEMLDRG--LQPTVVTFNVLMNGFCMLGMLE 590
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M+ K PD T+T L+ + GK+ E Q E+ +G P +
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445
Query: 159 AKQMV------NKMIKQGSVPDLETFNSLIETICKSGEL 191
A +MV N+M++ G P++ T+ +LI+ +CK GEL
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGEL 484
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
G++ +A+ +N +C + + N+ + RM +G PD T+ IL+ C + +
Sbjct: 603 GIVPDAI-TYNTLMKQHCIRNSM--NTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNL 659
Query: 138 REAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSL 181
+EA +E+ +KG+ P V S A+++ +M G V D E +N
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFF 719
Query: 182 IETICKSGE----LGLCAD 196
++ + G+ L LC +
Sbjct: 720 VDMCYEEGDVEITLNLCDE 738
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 117 LECGYPASLYFF----NILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIR 172
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C K+ +A E E+ KG P
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVT 232
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMS 292
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I K+ +D AF ++++ +L
Sbjct: 293 MKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRL 333
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 291
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 292 SMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXS 351
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 352 VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 386
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G +D A E + N + ++
Sbjct: 287 LIDEMSM----KGLKPDKI-----TYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVV 337
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L R M+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 338 YTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 397
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 398 RDGHVPSVVTYNVLMN 413
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E M ++ T ++I++ + G +D A E+F+K C + YN+L
Sbjct: 33 VEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCK 92
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
+ M KG+ PD T+ +++ C GK+ EA++F + +G++P V +
Sbjct: 93 DENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVA 152
Query: 159 AKQMVNKMIKQGSV------------------PDLETFNSLIETICK 187
+++ + K+G V PDL T+N+LI+ C+
Sbjct: 153 YNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCR 199
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 19/160 (11%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M KGF PD T++ +++ C +GK+ EA E ++E+++KG NP V + +V+++ + G
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 172 VPDL-ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK- 229
V + E F+ +IE C + + A +N + K+ I+ A++LL + G++
Sbjct: 61 VDEADELFHKMIERGCSANTVAYNALIN-------GLCKDENIERAYKLLEEMASKGYEP 113
Query: 230 ----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+G+ +A FF M + + P+ Y
Sbjct: 114 DNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAY 153
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 49/241 (20%)
Query: 49 WKTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
W + M V P T + +I+ F + D A+++F A + YNS+
Sbjct: 170 WGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSIL 229
Query: 107 VCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ R M+ G P+ T++I+++ C G M E +E+++K F+
Sbjct: 230 LGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFS 289
Query: 154 P----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG------EL 191
P V A +++ +M K G+VPD+ T+N L++ +CK+ EL
Sbjct: 290 PDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHEL 349
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAF 241
G D+ + + + + K + +A L ++E KL P + F+ D
Sbjct: 350 FSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIE--RKLVPDVVTFNILMDGL 407
Query: 242 C 242
C
Sbjct: 408 C 408
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 29/156 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY----------NSLH---VCFVRM 112
T +++++ K L+D A E+F+ C ++ Y N +H V F RM
Sbjct: 329 TYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM 388
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
I + VPD T IL++ C +GK+ EA++ L +S+ P
Sbjct: 389 IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRT 448
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
A ++ M+++G+V D+ N ++ +C+ G+L
Sbjct: 449 DEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLA 484
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S+++ + G + +E++ + T VLL N++ H M
Sbjct: 259 TYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEM 318
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ G VPD T+ IL++ C + + +A E + D G P + S
Sbjct: 319 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 378
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA---DVNTNKISIP-------- 205
A+ + ++MI++ VPD+ TFN L++ +CK+G+L DV + +P
Sbjct: 379 HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTL 438
Query: 206 --AVSKEFMIDEAFRLLCNLVEDG 227
+ ++ DEA RL +VE G
Sbjct: 439 MHGLCRDKRTDEAVRLFQYMVEKG 462
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL--SDKGFNPPVRSAKQMVNKM 166
F M+ KG V D H I++ C GK+ +A F + + SD F+P V + +VN +
Sbjct: 455 FQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNAL 514
Query: 167 IKQGSV----------------PDLETFNSLIETICKSG 189
I+ G V PD +N+L+ + K G
Sbjct: 515 IEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQG 553
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M+ G PD T+++L+N C KM A E+ KG
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVT 249
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
N V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 MKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 75/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLLPDLITYN 286
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP------------ 173
L+ C G +++A + + E+S KG P + +++ K+G +
Sbjct: 287 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 346
Query: 174 ----DLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL D T + + K+ + +
Sbjct: 347 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKG 406
Query: 217 FRLLCNLVEDGH 228
+LL + DGH
Sbjct: 407 SKLLKEMQRDGH 418
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D A E + N + +
Sbjct: 304 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T++VN +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHAPSVVTYNVLMN 430
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIR 114
S+II+ K G +DNA +FN+ + ++ YN+L F MI+
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
+ P+ T ++L++++ GK+REA + L+E+ +G P +
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A QMV+ MI +G PD+ TFN LI CK+ +
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 34/226 (15%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+ P T++ +I+ F K ++ A+++ + + C ++ +N L C
Sbjct: 363 GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDG 422
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
F M +G + + T+ LV +C SGK+ A++ QE+ + P + S K +++
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482
Query: 166 MIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ G + LE F + ++ EL D+ I I + +D+A+ L C+L
Sbjct: 483 LCDNGELEKALEIFGKIEKS---KMEL----DIGIYMIIIHGMCNASKVDDAWDLFCSLP 535
Query: 225 EDGHKL--------FPSLGQFDD---AFCFFSEMQIKTHPPNRPVY 259
G KL L + D A F +M + H P+ Y
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTY 581
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 38/153 (24%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ G P T LVN C +GK V A ++++M++ G
Sbjct: 183 RMVEMGHKPTLITLNTLVNGLCLNGK-------------------VSDAVVLIDRMVETG 223
Query: 171 SVPDLETFNSLIETICKSGELGLCADV----NTNKISIPAVSKEFMIDEAFRLLCNLVED 226
P+ T+ ++ +CKSG+ L ++ I + AV +ID L +D
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID-------GLCKD 276
Query: 227 GHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G D+AF F+EM+IK + Y
Sbjct: 277 --------GSLDNAFNLFNEMEIKGFKADIITY 301
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK--- 168
M+++G P+ T+ L++ +C ++ EA + + + KG +P + + ++N K
Sbjct: 359 MMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANR 418
Query: 169 -------------QGSVPDLETFNSLIETICKSGEL 191
+G + + T+N+L++ C+SG+L
Sbjct: 419 IDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKL 454
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
+ F +M +G PD+ T+ IL+ A A E ++E+ GF V + K ++N M
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN-M 622
Query: 167 IKQGSV 172
+ G +
Sbjct: 623 LSSGEL 628
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I F + G I A+++ N C + YN L +C F M
Sbjct: 524 TFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM 583
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
IRKG P T IL+N +C++GK+ A EF++++ +GF+P + + ++N + K+G +
Sbjct: 584 IRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRI 643
Query: 173 ----------------PDLETFNSLIETICKSG 189
PD T+N+LI +C+ G
Sbjct: 644 QEALNLFEKLQAEGIQPDSITYNTLICWLCREG 676
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 102/245 (41%), Gaps = 53/245 (21%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
S+ QTL I+ K +D A+++ + C V +N++ F R
Sbjct: 245 SMIYQTL---IDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAK 301
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD----------KGF--NPP 155
MI KGF P+ T+ L++ C + ++ EAQ L ++ GF N
Sbjct: 302 LVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGR 361
Query: 156 VRSAKQMV-NKMIKQGSVPDLETFNSLIETICKSGELGLCAD-------------VNTNK 201
+ A V +KMI G VPD+ TF++L+ +CK G G + +NT
Sbjct: 362 LNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYT 421
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIK 250
I I K+ ++EA +L ++ G L + +L G+ +A F EM K
Sbjct: 422 ILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSK 481
Query: 251 THPPN 255
P+
Sbjct: 482 GCKPD 486
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S ++ K GL +A+E+ N A C+ P+ T+T
Sbjct: 384 TFSTLVNGLCKKGLFGSALELVNDMDAKGCK----------------------PNLNTYT 421
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFN----------------PPVRSAKQMVNKMIKQ 169
IL++ +C G++ EA L+E+ KGF+ + A M +M +
Sbjct: 422 ILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSK 481
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ TFNSLI +C+ E+ G+ A+ T I A + I EA
Sbjct: 482 GCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEA 541
Query: 217 FRLLCNLVEDG 227
+L+ +++ G
Sbjct: 542 LKLVNDMLFRG 552
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 101 LYNSLHVCFVR-MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
++N+L F+R MI +GF PD T+ L+N C G+++EA ++L +G P +
Sbjct: 608 VHNALE--FMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITY 665
Query: 160 KQMVNKMIKQGSVPD 174
++ + ++G+ D
Sbjct: 666 NTLICWLCREGAFDD 680
>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 418
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
V A ++ +M+ Q PDL T+N+LI +CK G+L D+ T+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL-TD 300
Query: 201 KISIPAV 207
++S+ +
Sbjct: 301 EMSMKGL 307
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
Length = 504
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 105/267 (39%), Gaps = 53/267 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+MW+ E M L V +T L+I GK GL VE F K + FN + +N+ L
Sbjct: 197 AMWRLFEEMMDKGLPVSSRTFHLLICASGKAGLRRRLVEGFIKSSTFNYRPFRNAFNAIL 256
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H +MI +G+ PD T+ +++ A GK+ + L E+ G
Sbjct: 257 HTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVMRAKYMLGKLDQFHRLLDEMGRDGLT 316
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-- 195
P + + A ++N M G VP++ F +LI+ + ++G L C
Sbjct: 317 PDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGLGRAGNLEACKYF 376
Query: 196 -----------DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPS 233
DV + I + +EA R +++ G + +
Sbjct: 377 FDEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPNVYTYNSMIRGLCT 436
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+G+FD AF +M PN VY+
Sbjct: 437 VGEFDKAFAMLKDMDSHGCTPNFSVYS 463
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
V A ++ +M+ Q PDL T+N+LI +CK G+L D+ T+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL-TD 300
Query: 201 KISIPAV 207
++S+ +
Sbjct: 301 EMSMKGL 307
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 33/161 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + II K G+ D A++ +A C V+ YN L F+ M
Sbjct: 238 TYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDM 297
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ G P+ TH+IL++++C G++REA L+ + +KG P S
Sbjct: 298 VLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRL 357
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A + + KM+ G +PD+ +N+++ T+CK G CAD+
Sbjct: 358 DLAIEYLEKMVSDGCLPDIVNYNTILATLCKFG----CADL 394
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
+S + F RM +GF PD T+ I++ + CS GK+ A E + EL G P V
Sbjct: 148 DSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTIL 207
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A ++ ++++ +G PDL T+N++I ICK G
Sbjct: 208 IEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEG 250
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY-------------NSLHVCFVRM 112
T +++I G ++ A EV ++ C+ V+ Y N F +
Sbjct: 168 TYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDEL 227
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ +G PD T+ ++ C G A +F++ LS +G NP V S
Sbjct: 228 VSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRW 287
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
++++ M+ G P++ T + LI + C+ G E GL D +
Sbjct: 288 EDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPL 347
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I A KE +D A L +V DG
Sbjct: 348 ISAFCKEGRLDLAIEYLEKMVSDG 371
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 51/206 (24%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV 110
+E+MK L+ + +I F K G +D A+E K
Sbjct: 328 VLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK--------------------- 366
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
M+ G +PD + ++ C G A + ++L + G P VR+
Sbjct: 367 -MVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCG 425
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSG----ELGLCADVNTNKISIPAVS-- 208
A +M+++MI++G PD T+NSLI +C+ G +GL D+ + +S
Sbjct: 426 NKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFN 485
Query: 209 -------KEFMIDEAFRLLCNLVEDG 227
K + E LL +VE G
Sbjct: 486 IVLLGMCKAHRVFEGIELLITMVEKG 511
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 30/155 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQ---EFLQELSD----------KGFNPP--V 156
++ KGF PD T L+ + +S +++A E L+ D GF+ +
Sbjct: 88 VVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQI 147
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN-------------TNKIS 203
SA Q+ ++M +G PD+ T+N +I ++C G+L L +V T I
Sbjct: 148 DSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTIL 207
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
I A E I+EA L LV G L P L ++
Sbjct: 208 IEATILEGRINEALELFDELVSRG--LRPDLYTYN 240
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 43/174 (24%)
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------RSAKQM--VNKMIKQGS 171
L+N C +GK E+ FL+ + KGF P V R+ K+ V ++++
Sbjct: 68 LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
PD+ ++N++I K+ ++ G DV T I I ++ ++ AF
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187
Query: 219 LLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
++ L++DG K PS+ G+ ++A F E+ + P+ Y
Sbjct: 188 VMDELLKDGCK--PSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTY 239
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I + VF+ + + V+ +N+L ++R
Sbjct: 128 LECGYPASLYFF----NILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIR 183
Query: 112 M--IRKGF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
+ KGF PD T+++L+N C KM EA E E+ DKG P
Sbjct: 184 QGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 244 FTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMS 303
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I K+ ++ AF ++E+ +L
Sbjct: 304 MKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRL 344
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS 158
KG PDK T+T L++ C G + A E+ + + ++ G RS
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDV 397
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI+E+SM + +KPD + T + +I+ K G ++ A E + N + +
Sbjct: 298 LINEMSM----KGLKPDKI-----TYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVA 348
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T+++N +C G + + L+E+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQ 408
Query: 149 DKGFNPPV 156
G P V
Sbjct: 409 RDGHVPSV 416
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 86/208 (41%), Gaps = 46/208 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 115 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M+ G PD T+++L+N C KM A E+ KG
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVT 230
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
N V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 231 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMS 290
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAF 217
GL D T I KE +D AF
Sbjct: 291 MKGLKPDKFTYTTLIDGCCKEGDLDTAF 318
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 75/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLLPDLITYN 267
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP------------ 173
L+ C G +++A + + E+S KG P + +++ K+G +
Sbjct: 268 TLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE 327
Query: 174 ----DLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL D T + + K+ + +
Sbjct: 328 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKG 387
Query: 217 FRLLCNLVEDGH 228
+LL + DGH
Sbjct: 388 SKLLKEMQRDGH 399
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T + +I+ K G +D A E + N + +
Sbjct: 285 LIDEMSM----KGLKPDKF-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 335
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD T+T++VN +C G + + + L+E+
Sbjct: 336 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQ 395
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 396 RDGHAPSVVTYNVLMN 411
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 105/289 (36%), Gaps = 90/289 (31%)
Query: 60 LSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------- 111
L VF T S +++ FGK G A+EVF C ++YN L C +
Sbjct: 333 LDVF--TYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEAL 390
Query: 112 -----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
M RKG +PD RT+ I+++ S G+ +A F + + +P V + ++N +
Sbjct: 391 ELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGL 450
Query: 167 IK----------------QGSVPDLETFNSLIETICKSGEL------------------- 191
K +PDL TF +LI+T+ K+G +
Sbjct: 451 KKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNS 510
Query: 192 --------GLCADVNTNK---------------------ISIPAVSKEFMIDEAFRLLCN 222
G C +K I + S+ A LL
Sbjct: 511 YIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQE 570
Query: 223 LVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+V +GH L SL GQ +DA+ F EM K P+ Y+
Sbjct: 571 MVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYS 619
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 58/228 (25%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+EL + D ++ + II+ F + G + A ++F
Sbjct: 254 MELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFES---------------------- 291
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--------------FNPPVR 157
+ K VPD T+ +L+ A C S ++ EA QE G F R
Sbjct: 292 TMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGR 350
Query: 158 SAK--QMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
+AK ++ M K G +PD +N LI + K G+ L L D+N I +
Sbjct: 351 AAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNI 410
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ID + S G+++ A+ FF M+ + H P+ Y
Sbjct: 411 VID---------------VLSSCGRYEKAYSFFGMMKRRKHSPDVVTY 443
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 29/145 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--MIRKGF------ 117
T +I+ K G +++A+E + +YN+L F R + KG+
Sbjct: 477 TFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDM 536
Query: 118 -----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
PD T+TILV + G A E LQE+ +G P V
Sbjct: 537 IECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQV 596
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSL 181
A + +MI +G PD++T+++L
Sbjct: 597 EDAYTLFKEMIAKGFNPDMQTYSAL 621
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I F + G +D E+F +C + Y L + F R M+R+G
Sbjct: 516 LISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREG 575
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
P T+ +L+ + +G++ +A +E+ KGFNP +++ + N
Sbjct: 576 HTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPN 623
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 108/263 (41%), Gaps = 53/263 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ I+LMK ++ + +T ++++ + K GL AV FN+ + C+ + ++ +
Sbjct: 166 WQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISS 225
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
F ++ F PD +T LV+ WC +G + EA+ E+ G P V
Sbjct: 226 LSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNV 285
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG----------- 189
+ A + ++MI G P+ TFN+L+ K+G
Sbjct: 286 YTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQ 345
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-----------LGQ 236
LG D T I + ++ ++EA ++L N V+ G L S LG
Sbjct: 346 MKRLGCPPDAITYNFLIESHCRDDNLEEAVKIL-NSVKKGCNLNASSFNPIFGCISKLGD 404
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+ A F++M+ PN Y
Sbjct: 405 VNSAHRMFAKMKDLKCRPNTVTY 427
>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
filifolia]
Length = 431
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N C KM +A + E+ K P
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 MKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLLPDLITYN 286
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP------------ 173
L+ C G +++A + + E+S KG P + +++ K+G +
Sbjct: 287 TLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQE 346
Query: 174 ----DLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL D T + I K+ + +
Sbjct: 347 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 406
Query: 217 FRLLCNLVEDGH 228
+LL + DGH
Sbjct: 407 SKLLKEMQRDGH 418
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + ++PD + T + +I+ K G +D A E + N + +
Sbjct: 304 LIDEMSM----KGLQPDKI-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI++ D +T L++ C G+ +A++ L+E+ G P R+ ++N+ K+G
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKG 401
Query: 171 SV----------------PDLETFNSLI 182
V P + T+N L+
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 418
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLEYGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ + G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
V A ++ +M+ Q PDL T+N+LI +CK G+L D+ T+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL-TD 300
Query: 201 KISIPAV 207
++S+ +
Sbjct: 301 EMSMKGL 307
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQ 169
L+ C G +++AQ+ E+S KG P + +A + +MIK+
Sbjct: 281 TLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKE 340
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL ++ T + I K+ +
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 217 FRLLCNLVEDGH 228
+LL + DG+
Sbjct: 401 SKLLKEMQRDGY 412
>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Glycine max]
Length = 510
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 58/253 (22%)
Query: 49 WKTI-ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ------CVLL 101
W+ I E+ + L+ P T +I GL AV F+ AF+ + CVLL
Sbjct: 121 WQLIVEMDQRHHLTPTPSTFLTLIRRLICAGLTRQAVRAFHDIDAFSETKTTPQDFCVLL 180
Query: 102 YNSLHVCFVRMI-------RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
VR+ + F P + +T+L+ WC G+++ AQ FL E+ DKG P
Sbjct: 181 DTLCKYGHVRLAVEVFNKNKHTFPPTVKMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEP 240
Query: 155 --------------------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+R+A+++ ++M + G PD+ +F+ L+ ++
Sbjct: 241 NVVTYNVLLNGVCRKVSLHPEERFERTIRNAEEVFDQMRESGIEPDVTSFSILLHVYSRA 300
Query: 189 -------------GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLG 235
E G+C +V I ++ +++A RLL +V DG + P
Sbjct: 301 HKPQLVLDKLSLMKEKGICPNVVMYTSVIKCLASCGWLEDAERLLGEMVRDG--VSPCAA 358
Query: 236 QFDDAFCFFSEMQ 248
++ CFF E +
Sbjct: 359 TYN---CFFKEFR 368
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 33/238 (13%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MWKTI+ M + + P LS I++ GK +++ A+ +F + C+ YNS+
Sbjct: 143 MWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMIL 202
Query: 106 -----------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H + M +G +PD T++ L+ A+ G+ A E+ + G +
Sbjct: 203 MLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLH 262
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFM 212
P + ++ K G V E L++ + + G CA V T I V K
Sbjct: 263 PTAKIYTTILGIYFKLGRV---EKALGLVQEMKEKG----CALTVYTYTELIKGVGKAGK 315
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++EA+ + N++++G K L G+ DA F EM+ PN Y
Sbjct: 316 VEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTY 373
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+ +++I+ GK G + AV++FN+ C V YN+L VR
Sbjct: 477 RVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRT 536
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M G PD +H I++N + +G + A E + + P V S
Sbjct: 537 MEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGM 596
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++ +M +G DL T++S++E + K E
Sbjct: 597 FEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVRMIRK 115
+I GK G + +A+++F + + C V+ YN++ + + +M
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G VP T++IL++ +C + ++ +A L+E+ +KGF P + ++N + G
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINAL---GKAKRY 457
Query: 176 ETFNSLIETI 185
E N L + +
Sbjct: 458 EAANELFQEL 467
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 44/211 (20%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPD 120
+G+ G I AV+ F + FNC V YN++ H ++RM K D
Sbjct: 165 YGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESD 224
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKG-FNPPVR---------------SAKQMVN 164
T+TI + ++C +G+ A L+ + G F+ V A+++ +
Sbjct: 225 VYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFD 284
Query: 165 KMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEF 211
+M++ PD+ TFN L+ +CK G + G+C ++ T I I + KE
Sbjct: 285 EMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEG 344
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
+D A RLL + +G L P + ++ C
Sbjct: 345 SLDRAVRLLGCVSREG--LRPDVVTYNTVIC 373
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 43/205 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T +LII K G + +A + C + YN+L + R ++
Sbjct: 507 TYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRM 566
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+G PD T+ L+N C + K E E + +++KG P V
Sbjct: 567 WSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKV 626
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCA------DVN----TNKI 202
A ++ +M +G PD+ +F +LI CK G+L GL DV+ T I
Sbjct: 627 NEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNI 686
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I A S++ + A RL + ++G
Sbjct: 687 IISAFSEQLNMKMALRLFSEMKKNG 711
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 42/193 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKG 116
+I+ + GLI A+++ N+ C+ + YN + +M I KG
Sbjct: 476 LIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG 535
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------ 164
+PD T+ LV+ +C K+ A E + + +G P V + ++N
Sbjct: 536 CIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVM 595
Query: 165 ----KMIKQGSVPDLETFNSLIETICKS----------GEL---GLCADVNTNKISIPAV 207
M ++G P++ T+N++IE++C S GE+ GL DV + I
Sbjct: 596 EIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGF 655
Query: 208 SKEFMIDEAFRLL 220
K +D A+ L
Sbjct: 656 CKVGDLDGAYGLF 668
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 47/222 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++ I+ K G +D AV + + + V+ YN++ C +M
Sbjct: 332 TFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKM 391
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS- 171
+ GF P+ T+ +++ +C G + +A L++ KGF P + +VN + G
Sbjct: 392 VNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDP 451
Query: 172 ---------------VPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
P + +N+LI+ +C+ G E G D+ T +
Sbjct: 452 DQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLI 511
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
I + K + +A L+ + + G P + ++ D +C
Sbjct: 512 INGLCKMGCLSDANHLIGDAITKG--CIPDIFTYNTLVDGYC 551
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F M + G PD T+ +L++ +C +G + + +FL E +KGF P
Sbjct: 704 FSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCV 763
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIET 184
V+ A +++ M+++ VPD T N++ E
Sbjct: 764 EHKVQEAVGIIHLMVQKDIVPD--TVNTIFEA 793
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 33/238 (13%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MWKTI+ M + + P LS I++ GK +++ A+ +F + C+ YNS+
Sbjct: 143 MWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMIL 202
Query: 106 -----------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H + M +G +PD T++ L+ A+ G+ A E+ + G +
Sbjct: 203 MLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLH 262
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFM 212
P + ++ K G V E L++ + + G CA V T I V K
Sbjct: 263 PTAKIYTTILGIYFKLGRV---EKALGLVQEMKEKG----CALTVYTYTELIKGVGKAGK 315
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++EA+ + N++++G K L G+ DA F EM+ PN Y
Sbjct: 316 VEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTY 373
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+ +++I+ GK G + AV++FN+ C V YN+L VR
Sbjct: 477 RVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRT 536
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M G PD +H I++N + +G + A E + + P V S
Sbjct: 537 MEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGM 596
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++ +M +G DL T++S++E + K E
Sbjct: 597 FEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVRMIRK 115
+I GK G + +A+++F + + C V+ YN++ + + +M
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G VP T++IL++ +C + ++ +A L+E+ +KGF P + ++N + G
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINAL---GKAKRY 457
Query: 176 ETFNSLIETI 185
E N L + +
Sbjct: 458 EAANELFQEL 467
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L+ C G +++AQ+ + E+S KG P + +A + KMIK+
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKE 340
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL ++ T + I K+ +
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 217 FRLLCNLVEDGH 228
+LL + DG+
Sbjct: 401 SKLLKEMQRDGY 412
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G ++ A E K N + +
Sbjct: 298 LIDEMSM----KGLKPDKI-----TYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVA 348
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G P+ T+T+++N +C G + + L+E+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408
Query: 149 DKGFNPPV 156
G+ P V
Sbjct: 409 RDGYMPSV 416
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L+ C G +++AQ+ + E+S KG P + +A + +MIK+
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE 340
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL ++ T + I K+ +
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 217 FRLLCNLVEDGH 228
+LL + DG+
Sbjct: 401 SKLLKEMQRDGY 412
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 27/167 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F RM++ G P+ T++ L+N CS G++ EA + L+E+ KG P V +
Sbjct: 260 FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCD 319
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A +++ KM K+G VP+++TF +LI + + G+ + + ++ V
Sbjct: 320 AGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVT 379
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ LC VE G+F+ AF F M P+ Y
Sbjct: 380 YNALINQLC--VE---------GRFETAFTIFKWMLSHGSLPSTQTY 415
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 40/191 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
+ +M+ G VP T+ L+N C G+ A + + G P ++ +++
Sbjct: 365 YHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCL 424
Query: 164 -----------NKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+KM+K GS P++ T+N+LI CK G L GL D T
Sbjct: 425 MGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWT 484
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG----HKLFPS-------LGQFDDAFCFFSEMQ 248
I S+ ++ A L ++E G H + + L + DDA F +M
Sbjct: 485 YTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMV 544
Query: 249 IKTHPPNRPVY 259
+ P+ Y
Sbjct: 545 ESGNLPSSQTY 555
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 32/157 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+ +E+MK + L T + +I F + G +++A +F + Y ++
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
F +M+ G +P +T+ ++++ + + + EA+ F
Sbjct: 528 FNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENF------------- 574
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
KM+KQG +P++ T+ S I+ +C++G GL
Sbjct: 575 ------CGKMVKQGLLPNVITYTSFIDGLCRNGRTGL 605
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 87/223 (39%), Gaps = 36/223 (16%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
QT + II+ F G I A+ +F+K V+ YN+L + +
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEI 472
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G PD T+T L++ + GK+ A + + G +P + +++
Sbjct: 473 MKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532
Query: 172 VPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
V D L F ++E SG L T + I SK I EA +V+ G L
Sbjct: 533 VDDALALFWKMVE----SGNL---PSSQTYNVMISGFSKTNSISEAENFCGKMVKQG--L 583
Query: 231 FPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
P++ G+ AF F EM+ + + PN Y+
Sbjct: 584 LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYS 626
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 29/209 (13%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
M D L T + +I + G + A +F + YN + CF
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGD 427
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+M++ G P+ T+ L+ +C G + A L+ + G P + +
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTE 487
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM----IDEAF 217
+++ + G LE SL + + G ++ N ++ A+ + +D+A
Sbjct: 488 LISGFSRGGK---LEHATSLFYGMMEHG-------ISPNHVTYTAIIDGYFNLAKVDDAL 537
Query: 218 RLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
L +VE G+ PS ++ FS+
Sbjct: 538 ALFWKMVESGN--LPSSQTYNVMISGFSK 564
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 35/155 (22%)
Query: 108 CFV----RMIR-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------------ 150
CFV R++R + F P +++ + + G+++ +FL E++ K
Sbjct: 113 CFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTT 172
Query: 151 -----GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
G V A+ M KM+ G P L TFN++I +CK G + + ++
Sbjct: 173 LLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYD 232
Query: 206 AVSKEFM-------------IDEAFRLLCNLVEDG 227
A F +D AF + +V+DG
Sbjct: 233 AYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDG 267
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+++M+ G P T ++N C G+++EA+ + + P +
Sbjct: 190 YIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCR 249
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A M ++M+K G P+ T+++LI +C G L
Sbjct: 250 NHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
+YN L R+ G P+ T+T LV C G+ EA + + + KG P
Sbjct: 643 MYNLL----ARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP-----S 693
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ + + + G +L+ S + LG ++ K I A+ KE I+EA
Sbjct: 694 EEIYRALLIGECKNLKV-ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEA 748
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L+ C G +++AQ+ + E+S KG P + +A + +MIK+
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE 340
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL ++ T + I K+ +
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 217 FRLLCNLVEDGH 228
+LL + DG+
Sbjct: 401 SKLLKEMQRDGY 412
>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
salviifolia]
Length = 431
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + + YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M+ G PD T+++L+N KM +A E E+ KG P
Sbjct: 190 LGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVT 249
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 RKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL 350
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLLPDLITYN 286
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L+ C G +++A + + ++S KG P + SA + +MI++
Sbjct: 287 TLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQE 346
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL D T + I K+ + +
Sbjct: 347 NIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKG 406
Query: 217 FRLLCNLVEDGH 228
+LL + DGH
Sbjct: 407 SKLLKEMQRDGH 418
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+KPD + T + +I+ K G +D+A E + N + ++Y +L
Sbjct: 313 LKPDKI-----TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGR 367
Query: 106 HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
V +M+R+ G PD T+T+++N +C G + + + L+E+ G P V +
Sbjct: 368 SVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 427
Query: 162 MVN 164
++N
Sbjct: 428 LMN 430
>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia seriphioides]
Length = 414
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 117 LECGYPASLYFF----NILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIR 172
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--- 155
M G PD T+++L+N C KM EA E E+ G P
Sbjct: 173 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVT 232
Query: 156 -------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDL T+N+LI +CK G+L
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMS 292
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
G D T I KE +D AF ++++ +L
Sbjct: 293 LKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 333
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 57/195 (29%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLLPDLITYN 269
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-------- 177
L+ C G +++A + E+S KG P + +++ K+G DL+T
Sbjct: 270 TLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEG---DLDTAFEHRKRM 326
Query: 178 -----------FNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMI 213
+ +LI +C+ G +G D T + I K+ +
Sbjct: 327 IQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDV 386
Query: 214 DEAFRLLCNLVEDGH 228
+LL + DGH
Sbjct: 387 WTGSKLLKEMQRDGH 401
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI++ D +T L++ C G+ +A++ L+E+ G P R+ ++N+ K+G
Sbjct: 325 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKG 384
Query: 171 SV----------------PDLETFNSLI 182
V P + T+N L+
Sbjct: 385 DVWTGSKLLKEMQRDGHVPSVVTYNVLM 412
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+S+ + KPD + T + +I+ K G +D A E + N + +
Sbjct: 287 LIXEMSL----KGXKPDKI-----TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 337
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + L+E+
Sbjct: 338 YTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQ 397
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 398 RDGHVPSVVTYNVLMN 413
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 27/167 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F RM++ G P+ T++ L+N CS G++ EA + L+E+ KG P V +
Sbjct: 260 FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCD 319
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A +++ KM K+G VP+++TF +LI + + G+ + + ++ V
Sbjct: 320 AGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVT 379
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ LC VE G+F+ AF F M P+ Y
Sbjct: 380 YNALINQLC--VE---------GRFETAFTIFKWMLSHGSLPSTQTY 415
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 40/191 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
+ +M+ G VP T+ L+N C G+ A + + G P ++ +++
Sbjct: 365 YHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCL 424
Query: 164 -----------NKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+KM+K GS P++ T+N+LI CK G L GL D T
Sbjct: 425 MGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWT 484
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG----HKLFPS-------LGQFDDAFCFFSEMQ 248
I S+ ++ A L ++E G H + + L + DDA F +M
Sbjct: 485 YTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMV 544
Query: 249 IKTHPPNRPVY 259
+ P+ Y
Sbjct: 545 ESGNLPSSQTY 555
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 32/157 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+ +E+MK + L T + +I F + G +++A +F + Y ++
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
F +M+ G +P +T+ ++++ + + + EA+ F
Sbjct: 528 FNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENF------------- 574
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
KM+KQG +P++ T+ S I+ +C++G GL
Sbjct: 575 ------CGKMVKQGLLPNVITYTSFIDGLCRNGRTGL 605
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 87/223 (39%), Gaps = 36/223 (16%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
QT + II+ F G I A+ +F+K V+ YN+L + +
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEI 472
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G PD T+T L++ + GK+ A + + G +P + +++
Sbjct: 473 MKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532
Query: 172 VPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
V D L F ++E SG L T + I SK I EA +V+ G L
Sbjct: 533 VDDALALFWKMVE----SGNL---PSSQTYNVMISGFSKTNSISEAENFCGKMVKQG--L 583
Query: 231 FPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
P++ G+ AF F EM+ + + PN Y+
Sbjct: 584 LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYS 626
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 79/209 (37%), Gaps = 29/209 (13%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
M D L T + +I + G + A +F + YN + CF
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGD 427
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+M++ G P+ T+ L+ +C G + A L+ + G P + +
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTE 487
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM----IDEAF 217
+++ + G LE SL + + G ++ N ++ A+ + +D+A
Sbjct: 488 LISGFSRGGK---LEHATSLFYGMMEHG-------ISPNHVTYTAIIDGYFNLAKVDDAL 537
Query: 218 RLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
L +VE G+ PS ++ FS+
Sbjct: 538 ALFWKMVESGN--LPSSQTYNVMISGFSK 564
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 35/155 (22%)
Query: 108 CFV----RMIR-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------------ 150
CFV R++R + F P +++ + + G+++ +FL E++ K
Sbjct: 113 CFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTT 172
Query: 151 -----GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
G V A+ M KM+ G P L TFN++I +CK G + + ++
Sbjct: 173 LLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYD 232
Query: 206 AVSKEFM-------------IDEAFRLLCNLVEDG 227
A F +D AF + +V+DG
Sbjct: 233 AYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDG 267
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+++M+ G P T ++N C G+++EA+ + + P +
Sbjct: 190 YIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCR 249
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A M ++M+K G P+ T+++LI +C G L
Sbjct: 250 NHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
+YN L R+ G P+ T+T LV C G+ EA + + + KG P
Sbjct: 643 MYNLL----ARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP-----S 693
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ + + + G +L+ S + LG ++ K I A+ KE I+EA
Sbjct: 694 EEIYRALLIGECKNLKV-ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEA 748
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 46/216 (21%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
P SL F ++++ F K G I A VFN T + + V+ +N+L ++R
Sbjct: 133 PASLYFF----NILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLD 188
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------- 154
M G PD T+++L+N C KM +A E+ DKG P
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLI 248
Query: 155 -------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
V A ++ +M+ Q PDL T+N+LI +CK G+L GL
Sbjct: 249 AGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 308
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
D T I KE ++ AF ++++ +L
Sbjct: 309 PDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRL 344
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 38/191 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+ +E GL+ N V F A +C+ + + + +M+ + PD T+ L+
Sbjct: 228 LFDEMLDKGLVPNGV-TFTTLIAGHCKNRRV--DLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET------------ 177
C G +++A + + E+S KG P + +++ K+G DLET
Sbjct: 285 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEG---DLETAFEHRKRMIQEN 341
Query: 178 -------FNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAF 217
+ +LI +C+ G +GL D T + I K+ +
Sbjct: 342 IRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGS 401
Query: 218 RLLCNLVEDGH 228
+LL + DGH
Sbjct: 402 KLLKEMQRDGH 412
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L+ C G +++AQ+ + E+S KG P + +A + +MIK+
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE 340
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL ++ T + I K+ +
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 217 FRLLCNLVEDG 227
+LL + DG
Sbjct: 401 SKLLKEMQRDG 411
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 59/251 (23%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN------------- 103
PD+L+ P I+E K ID+A+ + + +YN
Sbjct: 112 PDALTYGP-----IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVE 166
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
+ F +M+++ P+ T+ L+N C + ++ A E +E++ KG+ P
Sbjct: 167 EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 226
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
+ +AK + +KM++ VP++ T+ +LI+ + KSG++ G+
Sbjct: 227 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 286
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSLGQFD---DAFCF 243
+V T I K +DEA +LL +V G + L SL + D DAF
Sbjct: 287 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 346
Query: 244 FSEM-QIKTHP 253
F M Q + HP
Sbjct: 347 FRGMAQRRCHP 357
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 27/167 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F +M+R VP+ T+T L++ SGK++ A E L + KG P V +
Sbjct: 242 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCK 301
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A +++ +M+ QG P + T+N L+ ++C++ +L +
Sbjct: 302 VRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVT 361
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ R LC+ HK Q D A ++EM K PP+ Y
Sbjct: 362 YNTLLRALCH-----HK------QLDGAHRLYAEMIAKGCPPDAITY 397
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
K +E M ++ T ++++ + +++A ++F C V+ YN+L
Sbjct: 310 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 369
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
H + MI KG PD T+ L +GK+ EAQE ++++ NP
Sbjct: 370 CHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNPFG 429
Query: 157 RSAK 160
RS++
Sbjct: 430 RSSQ 433
>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hederifolia]
Length = 431
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 134 LECGYPASLYFF----NILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M+ G PD T+++L+N C KM +A E E+ KG
Sbjct: 190 LGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 249
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
N V A ++ +M+ Q +PDL T+N+LI + K G+L
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMS 309
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 310 MKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 37/159 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL----LYNSL-------------HVC 108
T + +I+ K+G +D A+E++ + + QC+L YN+L H
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLS----QCLLPDLITYNTLIYGLXKKGDLKQAHDL 304
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS--- 158
M KG PDK T+ L++ C G + A E +QE L D + +
Sbjct: 305 IDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQ 364
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 365 EGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDV 403
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD T +I+ K G +D A E + N + +
Sbjct: 304 LIDEMSM----KGLKPDKF-----TYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E+
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQ 414
Query: 149 DKGFNPPVRSAKQMVN 164
G P V + ++N
Sbjct: 415 RDGHVPSVVTYNVLMN 430
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI++ D +T L++ C G+ +A++ L+E+ G P R+ ++N+ K+G
Sbjct: 342 RMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKG 401
Query: 171 SV----------------PDLETFNSLI 182
V P + T+N L+
Sbjct: 402 DVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 57/195 (29%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-------- 177
L+ C G +++AQ+ + E+S KG P + +++ K+G DLET
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEG---DLETAFEYRKIM 337
Query: 178 -----------FNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMI 213
+ +LI +C+ G +GL ++ T + I K+ +
Sbjct: 338 IKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDV 397
Query: 214 DEAFRLLCNLVEDGH 228
+L+ + DG+
Sbjct: 398 WTGSKLMKEMQRDGY 412
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 33/183 (18%)
Query: 43 ISELSMWKTIE--LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
+ + S WK L + SL++ P T +++++ F K G + A+ V T +
Sbjct: 278 LCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPN 337
Query: 99 VLLYNSLHV-------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
V+ Y+SL F MI KG P+ ++ IL+N +C + ++ EA +
Sbjct: 338 VVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFN 397
Query: 146 ELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
E+ +G P +R A+ + M G++PDL T++ L++ CK G
Sbjct: 398 EMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQG 457
Query: 190 ELG 192
LG
Sbjct: 458 YLG 460
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
+ +++I + K ID A+++FN+ MI +G P+ ++
Sbjct: 375 SYNILINGYCKAKRIDEAMQLFNE----------------------MIHQGLTPNNVSYN 412
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------- 172
L++ +C GK+REAQ+ + + G P + + +++ KQG +
Sbjct: 413 TLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQST 472
Query: 173 ---PDLETFNSLIETICKSG----------EL---GLCADVNTNKISIPAVSKEFMIDEA 216
P+L + L+ +CKSG EL GL V I + KE ++DEA
Sbjct: 473 YLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEA 532
Query: 217 FRLLCNLVEDG 227
N+ DG
Sbjct: 533 LEAFRNMEADG 543
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 45/224 (20%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+S+ K +EL+ LS TLS+ + F + +D V K Q ++ + +L
Sbjct: 113 ISLSKQMELV---GLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTL 169
Query: 106 --HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+C F M+ KG PD T+ ++N C G+ A L+++ + G
Sbjct: 170 INGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGC 229
Query: 153 NPPVRSAKQMVNKMIK----------------QGSVPDLETFNSLIETICKSGE------ 190
P + + +++ + + +G PD+ T+ SLI+ +CK
Sbjct: 230 QPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASA 289
Query: 191 -------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
L + D+ T + + KE + EA +L + E G
Sbjct: 290 LLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMG 333
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 42/215 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
M L + P SL+I K G VF + C+ V +Y +L
Sbjct: 310 MDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGN 369
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--------- 152
+ F RM ++G PD+ T+ ++VN+ C SG++ EA E+++ S KG
Sbjct: 370 MGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSS 429
Query: 153 -------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ V A+++ +M+K+G PD +N+LI+ + K G++ G
Sbjct: 430 LIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDG 489
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T I I + +E +EA L +++ G
Sbjct: 490 CDQTVYTYTILITGLFREHRNEEALTLWDLMIDKG 524
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ K G ID A+ + + C Q V Y L R MI KG
Sbjct: 465 LIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKG 524
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
P L C SGK+ A + L E++ G P + M+N + K G + +
Sbjct: 525 ITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVIPET-AFDDMINILCKAGRIKE 581
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 39/186 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E ++V S +I+ GK G +D A + F
Sbjct: 412 MEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERI----------------------FYE 449
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M++KG PD + L++A GK+ EA + + G + V +
Sbjct: 450 MVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHR 509
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A + + MI +G P F +L +C SG++ + ++++ V E D+
Sbjct: 510 NEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKI-LDEMAPMGVIPETAFDD 568
Query: 216 AFRLLC 221
+LC
Sbjct: 569 MINILC 574
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 59/251 (23%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN------------- 103
PD+L+ P I+E K ID+A+ + + +YN
Sbjct: 7 PDALTYGP-----IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVE 61
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
+ F +M+++ P+ T+ L+N C + ++ A E +E++ KG+ P
Sbjct: 62 EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 121
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
+ +AK + +KM++ VP++ T+ +LI+ + KSG++ G+
Sbjct: 122 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 181
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSLGQFD---DAFCF 243
+V T I K +DEA +LL +V G + L SL + D DAF
Sbjct: 182 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 241
Query: 244 FSEM-QIKTHP 253
F M Q + HP
Sbjct: 242 FRGMAQRRCHP 252
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 27/167 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F +M+R VP+ T+T L++ SGK++ A E L + KG P V +
Sbjct: 137 FDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCK 196
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A +++ +M+ QG P + T+N L+ ++C++ +L +
Sbjct: 197 VRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVT 256
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ R LC+ HK Q D A ++EM K PP+ Y
Sbjct: 257 YNTLLRALCH-----HK------QLDGAHRLYAEMIAKGCPPDAITY 292
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
K +E M ++ T ++++ + +++A ++F C V+ YN+L
Sbjct: 205 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 264
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
H + MI KG PD T+ L +GK+ EAQE ++++ NP
Sbjct: 265 CHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNPFG 324
Query: 157 RSAK 160
RS++
Sbjct: 325 RSSQ 328
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 100/240 (41%), Gaps = 54/240 (22%)
Query: 70 IIEEFGKHGLIDNAVEVF-NKCTAFNCQQCVLLYNSLHVCFVR-------------MIRK 115
+I F HG +D+A V + T++ V YNSL + + M K
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G P+ ++TILV+ +C GK+ EA L E+S G P + A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
++ +M ++G PD+ TFNSLI +C+ E+ G+ A+ T I A
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTHPPN 255
+ I EA +L+ +V G L + SL G+ D A F +M H P+
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 56/244 (22%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
+ + M D L + +I F K I AVE+F + C+ V +NSL
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503
Query: 106 --------HVCFV--RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
H ++ MI +G V + T+ L+NA+ G+++E
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE---------------- 547
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
A+++VN+M+ QGS D T+NSLI+ +C++GE+ G + I
Sbjct: 548 ---ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNI 604
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKT 251
I + + M++EA +V G F SL G+ +D F ++Q +
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 252 HPPN 255
PP+
Sbjct: 665 IPPD 668
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I F + G I A ++ N+ + YNSL +C F +M
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+R G P + IL+N C SG + EA EF +E+ +G P + + ++N + + G +
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650
Query: 173 ----------------PDLETFNSLIETICKSG 189
PD TFN+L+ +CK G
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGG 683
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD----------KGFNPPVR--S 158
RM+ +GF PD T+ L+N C G++ A++ + GF R
Sbjct: 312 RMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDD 371
Query: 159 AKQMVNKMIKQ-GSVPDLETFNSLIETICKSGELGLCADV---NTNKISIPAVSKEFMID 214
AK +++ M+ G VPD+ T+NSLI K G +GL +V NK P V
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSY---- 427
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
++ DG F LG+ D+A+ +EM PN
Sbjct: 428 -------TILVDG---FCKLGKIDEAYNVLNEMSADGLKPN 458
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 33 RTLNRLNLTLISELSMWKT---IELMKPDSLSVFP-QTLSLIIEEFGKHGLIDNAVEVFN 88
+T++RL + + E ++K I +M+ + FP QT L++E + N
Sbjct: 128 KTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLE-------MRNVYSCEP 180
Query: 89 KCTAFNCQQCVLLYNSLHVC----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
++N +L+ + H F M+ + P T +++ A+C+ ++ A L
Sbjct: 181 TFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLL 240
Query: 145 QELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++++ G P V A Q++ +M G VPD ETFN +I +CK
Sbjct: 241 RDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK 299
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 31/152 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M + G VP+ + L+++ ++ EA + L+E+ G P
Sbjct: 243 MTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 302
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ A +MVN+M+ +G PD T+ L+ +CK G + D+ +I P +
Sbjct: 303 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL-FYRIPKPEI-------- 353
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
++ N + G F + G+ DDA S+M
Sbjct: 354 ---VIFNTLIHG---FVTHGRLDDAKAVLSDM 379
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 32/187 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+++E + GL D +V VF C+ +L+ F M+ +G+ P+ T T L+
Sbjct: 242 LVDEMIRRGL-DVSVYVFTVLIDGLCKNGMLV--EAREMFDEMVNRGYEPNIVTCTALMG 298
Query: 130 AWCSSGKMREAQEFLQELSDKGFN----------------PPVRSAKQMVNKMIKQGSVP 173
+C G + A+E + + GF VR A ++ ++M ++G VP
Sbjct: 299 GYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVP 358
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++ T+NSLI+ +CK+GE+ GL D+ T I + + K +D+A L
Sbjct: 359 NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLF 418
Query: 221 CNLVEDG 227
LVE G
Sbjct: 419 NQLVESG 425
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 57/250 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T ++ I + K G + +AV VF++ ++ YNSL C + M
Sbjct: 327 TYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTM 386
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
R G PD T IL++ C S ++ +A +L + G P V S
Sbjct: 387 HRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRM 446
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A ++ M + VP + T++ LI+ +C+SG + G D T I
Sbjct: 447 GEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSIL 506
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
+ A+ K+ +DEA L +++ G L P + + D+A F EM +K
Sbjct: 507 LDALWKKQHLDEAVFLFNQMIKRG--LEPDVMCYTIMIDGYCKSERIDEAINLFREMHMK 564
Query: 251 THPPNRPVYA 260
P+ Y
Sbjct: 565 NLVPDIVTYT 574
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 27/115 (23%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116
PD++ T S++++ K +D AV +FN+ MI++G
Sbjct: 498 PDTI-----TYSILLDALWKKQHLDEAVFLFNQ----------------------MIKRG 530
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
PD +TI+++ +C S ++ EA +E+ K P + + + N + K GS
Sbjct: 531 LEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGS 585
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 51/189 (26%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
S++I+ ++G +D E +N+ M+ G P++ T+ L
Sbjct: 189 SIVIDCLCRNGFVDEGFEFYNE----------------------MMGNGVCPNEFTYGSL 226
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNKMIKQGS 171
+ C GK E + E+ +G + V A++M ++M+ +G
Sbjct: 227 IRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGY 286
Query: 172 VPDLETFNSLIETICKS-------------GELGLCADVNTNKISIPAVSKEFMIDEAFR 218
P++ T +L+ C GE G DV T + I K + +A R
Sbjct: 287 EPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVR 346
Query: 219 LLCNLVEDG 227
+ + +G
Sbjct: 347 VFDEMCREG 355
>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
herrerae]
Length = 395
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ +N+L ++R
Sbjct: 115 LECGYPASLYFF----NILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIR 170
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
M G PD T+++L+N C KM +A E E+ DKG
Sbjct: 171 LGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 230
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
N V A ++ +M+ Q PDL T+N+L +CK G+L D+
Sbjct: 231 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDL 285
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ B G P
Sbjct: 182 IKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNX 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q +PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 298
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS 158
KG PDK T+T L++ C G + A E+ + + + G RS
Sbjct: 303 SMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDV 397
>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 418
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS 158
KG PDK T+T L++ C G + A E+ + + + G RS
Sbjct: 303 SMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
Length = 1080
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 32/189 (16%)
Query: 34 TLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N + L+ + + I+L + S P T +++ K G I++A +FN+
Sbjct: 827 TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 886
Query: 91 TAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ C+ +YN L VC F M+ +G PD +++TI+++ C +G++
Sbjct: 887 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 946
Query: 138 REAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSL 181
+ + ++L + G P + A + N+M K+G VP+L T+NSL
Sbjct: 947 NDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSL 1006
Query: 182 IETICKSGE 190
I + K+G+
Sbjct: 1007 ILHLGKAGK 1015
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 46/215 (21%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFG--KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-- 108
ELMK S + P ++ FG K G + A VF++ A + Y + C
Sbjct: 429 ELMK--SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS 486
Query: 109 -----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
F MI VPD L++ +G+ EA +L + P
Sbjct: 487 KASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDG 546
Query: 158 SAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL---------- 191
+ ++ + ++G V P+L T+N++++ +CK+G +
Sbjct: 547 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 606
Query: 192 ---GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
G D+++ I + KE +EAF + C +
Sbjct: 607 TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 641
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M RKG+ T+ +++ S ++ +A + L +GF+P + +++ ++K G
Sbjct: 816 MHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGR 875
Query: 172 VPDLET-FNSLIETICKSG----------------------------ELGLCADVNTNKI 202
+ D E FN ++E CK+ + G+ D+ + I
Sbjct: 876 IEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTI 935
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSLGQ---FDDAFCFFSEMQIKT 251
I + K +++ L+E G + L LG+ ++A F+EMQ K
Sbjct: 936 IIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKG 995
Query: 252 HPPNRPVY 259
PN Y
Sbjct: 996 IVPNLYTY 1003
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 38/132 (28%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +L+I+ GK ++ AV +FN+ M +KG VP+ T+
Sbjct: 967 TYNLLIDGLGKSKRLEEAVSLFNE----------------------MQKKGIVPNLYTYN 1004
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQ 169
L+ +GK EA + +EL KG+ P V SA +MI
Sbjct: 1005 SLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG 1064
Query: 170 GSVPDLETFNSL 181
G +P+ T+ L
Sbjct: 1065 GCLPNSSTYMQL 1076
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 35/241 (14%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
S + +W MK D + + +I+ + G + A+E+F++ YN
Sbjct: 318 SVMEIWNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 374
Query: 104 SLHVCFVRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
SL F++ R G P+ TH + +N + SG+ +A + + + K
Sbjct: 375 SLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 434
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLE-TFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
G P V + ++ + K G + + F+ L +G+ D T + I SK
Sbjct: 435 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL-------KAMGVSPDTITYTMMIKCCSK 487
Query: 210 EFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPV 258
DEA ++ +++E+ + L +L G+ D+A+ F +++ P
Sbjct: 488 ASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGT 547
Query: 259 Y 259
Y
Sbjct: 548 Y 548
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 71/167 (42%), Gaps = 29/167 (17%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY----------- 102
+M D + +T S+++ FGK ++ + + + A + V Y
Sbjct: 185 VMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAK 244
Query: 103 --NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL--SDK-------- 150
+ + +M +G PD THT+L+ C +G++ +A++ ++ SD+
Sbjct: 245 RFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 304
Query: 151 ------GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
G N +S ++ N M G ++ + ++I+ +C+ G +
Sbjct: 305 TLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRV 351
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 105/289 (36%), Gaps = 90/289 (31%)
Query: 60 LSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------- 111
L VF T S +++ GK G A+EVF+ C ++YN L C +
Sbjct: 115 LDVF--TYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEAL 172
Query: 112 -----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
M RKG +PD RT+ I+++ S G+ +A F + + +P V + ++N +
Sbjct: 173 ELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGL 232
Query: 167 IK----------------QGSVPDLETFNSLIETICKSGEL------------------- 191
K +PDL TF +LI+T+ K+G +
Sbjct: 233 KKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNS 292
Query: 192 --------GLC---------------------ADVNTNKISIPAVSKEFMIDEAFRLLCN 222
G C D T I + S+ A LL
Sbjct: 293 YIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQE 352
Query: 223 LVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+V +GH L SL GQ +DA+ F EM K P+ Y+
Sbjct: 353 MVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYS 401
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 35/171 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M+ G D L++ C G +R+A+ L ++ F V
Sbjct: 70 FQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGK 129
Query: 157 --RSAK--QMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVS 208
R+AK ++ + M K G +PD +N LI + K G+ L L D+N I +
Sbjct: 130 AGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRT 189
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ID + S G+++ A+ FF M+ + H P+ Y
Sbjct: 190 YNIVID---------------VLSSCGRYEKAYSFFGMMKRRKHSPDVVTY 225
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 29/145 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--MIRKGF------ 117
T +I+ K G +++A+E + +YN+L F R + KG+
Sbjct: 259 TFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDM 318
Query: 118 -----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
PD T+TILV + G A E LQE+ +G P V
Sbjct: 319 IECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQV 378
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSL 181
A + +MI +G PD++T+++L
Sbjct: 379 EDAYTLFKEMIAKGFNPDMQTYSAL 403
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I F + G +D E+F +C + Y L + F R M+R+G
Sbjct: 298 LISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREG 357
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
P T+ +L+ + +G++ +A +E+ KGFNP +++ + N
Sbjct: 358 HTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPN 405
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 43/214 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-------------LHVCFVRMIRKG 116
+I + + GL + AVE+F + F C V +YN +++ + M R G
Sbjct: 117 VISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDG 176
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
F P+ T+ +L+ A C + K+ A++ L E+S+KG P S +++ M + G V
Sbjct: 177 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGR 236
Query: 173 -------PDLETFNSLIETICK----SGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
P + +N+LI +CK G L ++ IS +S +I+ +LC
Sbjct: 237 ELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLIN----VLC 292
Query: 222 NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
N GQ + AF F ++M + PN
Sbjct: 293 N-----------SGQIELAFSFLTQMLKRGCHPN 315
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-------- 163
M+ KG P+ +++ L+N C+SG++ A FL ++ +G +P + + +V
Sbjct: 272 MVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGT 331
Query: 164 --------NKMIKQ-GSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
N+MI+ G P++ +N+L++ C G + +S+ + +E
Sbjct: 332 TFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNI-------VKAVSVFSHMEEIGCS 384
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
R +L+ F G D A +++M PN VY
Sbjct: 385 PNIRTYGSLING----FAKRGSLDGAVYIWNKMLTSGCCPNVVVY 425
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
L T L +W ++++ L + +++ F HG I AV VF+ C
Sbjct: 328 LRGTTFDALDLWN--QMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSP 385
Query: 98 CVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
+ Y SL F + M+ G P+ +T +V A C K +EA+ +
Sbjct: 386 NIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI 445
Query: 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ +S K+ P + TFN+ I+ +C +G L
Sbjct: 446 EIMS-------------------KENCAPSVPTFNAFIKGLCDAGRL 473
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 49 WKTIE-LMKPDSLSVFPQ---TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
W+ E LM S +P T +++I + GL++ A+EV ++ + C L YN
Sbjct: 277 WEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNP 336
Query: 105 LHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
+ F + M+ +G PD ++ L+ A C G++ A E L +L DKG
Sbjct: 337 ILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG 396
Query: 152 FNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
P + S +++ + K G + LE N ++ GL D+ T + +E
Sbjct: 397 CTPVLISYNTVIDGLTKAGKTKEALELLNEMVTK-------GLQPDIITYSTISSGLCRE 449
Query: 211 FMIDEAFRLLCNLVEDG 227
I+EA R C + + G
Sbjct: 450 DRIEEAIRAFCKVQDMG 466
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 85/200 (42%), Gaps = 34/200 (17%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+ ++V + I E T R K ++ M+ + T ++++ + G +
Sbjct: 188 VPDVVTYTILLEATCKRSGYK-----QAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRV 242
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTIL 127
D+A+E + C+ + YN + +C M +KG+ P+ T +L
Sbjct: 243 DDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNML 302
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNP------PVRSA----KQM------VNKMIKQGS 171
++ C G + A E L ++ G P P+ A K+M V M+ +G
Sbjct: 303 ISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGC 362
Query: 172 VPDLETFNSLIETICKSGEL 191
PD+ ++N+L+ +C+ GE+
Sbjct: 363 YPDIVSYNTLLTALCRGGEV 382
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 32/145 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R+G VPD T+TIL+ A C ++A + L E+ KG P + + +VN + ++G
Sbjct: 182 MLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGR 241
Query: 172 VPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
V D +E SL C+ N +S V K E
Sbjct: 242 VDDAIEFLKSLPSHGCEP-----------NTVSYNIVLKGLCTAE--------------- 275
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPN 255
+++DA +EM K +PPN
Sbjct: 276 -----RWEDAEKLMAEMSQKGYPPN 295
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 23/124 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVC---- 108
++PD + T S I + I+ A+ F K + +LYN+ L +C
Sbjct: 432 LQPDII-----TYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRE 486
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F+ MI G +P++ T+TIL+ G ++EA+E L EL +G +K
Sbjct: 487 THNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGV-----VSKG 541
Query: 162 MVNK 165
++NK
Sbjct: 542 LINK 545
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 33/200 (16%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ELM S +P +S ++ + G +D AVE+ ++ C ++ YN++
Sbjct: 354 VELMV--SRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGL 411
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
+ M+ KG PD T++ + + C ++ EA ++ D G P
Sbjct: 412 TKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNT 471
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
+A + MI G +P+ T+ LIE + G + ++
Sbjct: 472 VLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGE 531
Query: 201 KISIPAVSKEFMIDEAFRLL 220
S VSK + A RLL
Sbjct: 532 LCSRGVVSKGLINKAAIRLL 551
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 103/251 (41%), Gaps = 60/251 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG------- 116
+ +++I + G +D A E+FN+ F C V+ YN+L C V + +G
Sbjct: 239 SFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKEL 298
Query: 117 -----FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
PD T+T +++ +C GKM +A + G P
Sbjct: 299 LSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGD 358
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKIS-------- 203
+ SA+ M +M+ G PD+ TF SLI+ C++G+ L L ++N +S
Sbjct: 359 MVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAI 418
Query: 204 -IPAVSKEFMIDEAFRLLCNL--------------VEDGHKLFPSLGQFDDAFCFFSEMQ 248
A+ KE + EA L +L V DG F G D+A +EM+
Sbjct: 419 LTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDG---FCKAGNVDEANVILAEME 475
Query: 249 IKTHPPNRPVY 259
K P++ Y
Sbjct: 476 EKRCKPDKITY 486
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 29/167 (17%)
Query: 107 VCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
VCF R P D + IL+ C GK+ +A E E+ G +P V + ++N
Sbjct: 222 VCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLING 281
Query: 166 MIKQGSV-----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
+ V PD+ T+ S+I CK G++ + + N IS
Sbjct: 282 FCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKP 341
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
F F +L N F +G A + EM + PP+
Sbjct: 342 NAF----TFNILIN-------GFGKVGDMVSAENMYEEMLLLGCPPD 377
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 19/84 (22%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+V M K PDK T+TIL+ C G++ E A + N+
Sbjct: 468 NVILAEMEEKRCKPDKITYTILIIGHCMKGRLSE-------------------AISIFNR 508
Query: 166 MIKQGSVPDLETFNSLIETICKSG 189
M+ G PD T SLI + K+G
Sbjct: 509 MLGTGCAPDSITMTSLISCLLKAG 532
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C K+ +A E E+ D G P
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNS 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
V A ++ +M+ Q PDL T+N+LI +CK+G+L D+ N
Sbjct: 242 VSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDL-IN 300
Query: 201 KISIPAV 207
++S+ +
Sbjct: 301 EMSMKGL 307
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+ +M+ + PD T+ L+ C +G +++AQ+ + E+S KG P
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCK 323
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNT 199
+ +A + +MIK+ D + +LI +C+ G +GL ++ T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I K+ + +L+ + DG+
Sbjct: 384 YTMIINEFCKKGDVWTGSKLMKEMQRDGY 412
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 46/228 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T + +I + + G +D A+ + K NC V+ Y +L F +M R
Sbjct: 289 TYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQM 348
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
PD T T LV+ C G+M +A E L+E++ +G P V
Sbjct: 349 VANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQV 408
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFM 212
R A+++V +G VP+ T+N L+ C++G L +N+ P +
Sbjct: 409 RKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYA 468
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
I +L L D G+ DDA F+ EM + + P +A
Sbjct: 469 I-----ILDALCRD--------GRTDDAVQFYEEMIQRGYVPAAATFA 503
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 68/221 (30%)
Query: 57 PD--SLSVFPQTLSL---------IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
PD +L+V Q+L L ++EE G+ NA+ ++ C+ C L ++
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAI-TYSALVDGLCK-CERLDEAV 239
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+ + R+GF PD T++ +++ C +G++R+A + +E+S
Sbjct: 240 ALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS----------------- 282
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
P T+NSLI C++G++ DEA RLL +V+
Sbjct: 283 -----CAPTAITYNSLIGGYCRAGDM----------------------DEAIRLLGKMVD 315
Query: 226 DG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
D F +G+ DDA+ F +M P+
Sbjct: 316 DNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD 356
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 77/207 (37%), Gaps = 66/207 (31%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
++ + M + LS T + +++ G +++A+E+ + T C + YN +
Sbjct: 342 YELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 401
Query: 107 VCFVRMIRK-----------GFVPDKRTHTILV--------------------------- 128
C +RK GFVP+ T+ ILV
Sbjct: 402 YCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP 461
Query: 129 ----------NAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQM 162
+A C G+ +A +F +E+ +G+ P + A ++
Sbjct: 462 TSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHEL 521
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSG 189
+ +MIK G P T ++++ C++G
Sbjct: 522 LEEMIKYGHTPGPGTCDAVVSAYCRAG 548
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 43/221 (19%)
Query: 24 IVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNA 83
+V ++A L L L+ E+ + LS P L+ I+ E A
Sbjct: 15 VVLRGLHASAKLRHLGPLLLDEI---------RDRGLSPDPVELNTILAELCDARDTTTA 65
Query: 84 VEVFNKCTAFNCQQCVLLYNSLH-VCFVRMI-----------RKGFVPDKRTHTILVNAW 131
+ +F+K YN +H +C R++ +G P H +++
Sbjct: 66 MALFDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGL 125
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
C +G++R A ++++D +PP D T+ L+ + K+G L
Sbjct: 126 CRAGRLRHALGVYRQMNDA--HPP------------------DFLTYTKLVHGLSKAGRL 165
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLC--NLVEDGHKL 230
V +S V + + LC + V+D +L
Sbjct: 166 RDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 206
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 33/178 (18%)
Query: 47 SMWKTIELMKPDSLS--VFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
S+WK + + LS + P T S+ ++ F K G++ A + N + V+ Y
Sbjct: 363 SLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTY 422
Query: 103 NSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
NSL F M+ KG PD ++ IL+ +C S ++ EA++ E+S
Sbjct: 423 NSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSH 482
Query: 150 KGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
KG P +AK++ KM G PDL T+++L+ CK G L
Sbjct: 483 KGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHL 540
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 60/215 (27%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
L E+ W MKPD + T S++++ K G++ A+ VF K
Sbjct: 301 LFKEMLEWN----MKPDVV-----TFSILVDALCKEGVVLEALSVFGK------------ 339
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
MI+ PD T++ L++ C S +E+ L E+ + P V +
Sbjct: 340 ----------MIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSI 389
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
A+ ++N MI++G P++ T+NSL++ C ++ G
Sbjct: 390 WVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKG 449
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
DV + I I K IDEA +L + G
Sbjct: 450 CAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKG 484
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 112/268 (41%), Gaps = 63/268 (23%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIEL-MKPDSLSVFPQTLSLII 71
DY + + + H + L ++ T + + M K +EL +P+ +S S+II
Sbjct: 198 DYIMSRGYQPTVYTHTMIVN-GLCKIGKTSAAIVWMKKMVELDCEPEVVS-----YSIII 251
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAW 131
+ K+ L++ AV++F + V+ YNSL +
Sbjct: 252 DSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSL----------------------IYGM 289
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDL 175
C+SG+ ++A +E+ + P V + +V+ + K+G V PD+
Sbjct: 290 CNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDI 349
Query: 176 ETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
T++SLI +CKS + DV T I + K+ M+ EA ++
Sbjct: 350 VTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINL 409
Query: 223 LVEDGHKLFPSLGQFD---DAFCFFSEM 247
++E G L P++ ++ D +C S+M
Sbjct: 410 MIERG--LRPNVVTYNSLMDGYCLHSQM 435
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 27/153 (17%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++ + GF P T L+N C G++ EA E L + +G+ P V + +VN + K G
Sbjct: 164 KIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIG 223
Query: 171 SV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
P++ +++ +I+++CK+ + D+ + SI +
Sbjct: 224 KTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYN 283
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+CN GQ+ A F EM
Sbjct: 284 SLIYGMCN-----------SGQWKQASILFKEM 305
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 51/229 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ + + G++D+A+++ + + YN+L R MI G
Sbjct: 358 MIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMG 417
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
VP+ T+T L++ C G M EA+ +E+++KG P V R A+
Sbjct: 418 VVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAE 477
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ +M K+G VPD+ T+ SL+ C +G++ G +V I +
Sbjct: 478 RFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 537
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
+KE + AF+L ++++ G L P DD+ +S + H NR
Sbjct: 538 AKEGRSEAAFQLYDDMLKAG--LIP-----DDS--LYSALVGSLHTDNR 577
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 108/300 (36%), Gaps = 88/300 (29%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
+ + +E+M+ + + T +++++ I +FN+ A N V LY ++
Sbjct: 231 VQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVIN 290
Query: 108 CFVRM-------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--- 151
+ R + G P++RT+ +L+N +C G+M A+ L ++ +G
Sbjct: 291 AYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGL 350
Query: 152 ----FNPPVRS--------------------------------------------AKQMV 163
FN + AK ++
Sbjct: 351 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 410
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKE 210
+ MI+ G VP+ T+ +LI CK G++ G V T + I +K+
Sbjct: 411 HIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKK 470
Query: 211 FMIDEAFRLLCNLVEDGH----KLFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
I EA R + + G + SL G+ D A F EM+ + PN Y
Sbjct: 471 GSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAY 530
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDN 82
V DIY TL L ++ L KT+ L + V P T + +I K G +
Sbjct: 383 VELDIYTYNTLA-CGLCRVNRLDEAKTL-LHIMIEMGVVPNYVTYTTLISIHCKDGDMVE 440
Query: 83 AVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVN 129
A +F + V+ YN + + + M +KGFVPD T+ LV+
Sbjct: 441 ARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVH 500
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVP 173
C +GK+ A + +E+ +G P V +A Q+ + M+K G +P
Sbjct: 501 GHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIP 560
Query: 174 DLETFNSLIETI 185
D +++L+ ++
Sbjct: 561 DDSLYSALVGSL 572
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 99/287 (34%), Gaps = 88/287 (30%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
SV P S++++ K G +D+A + + L YNSL C+VR
Sbjct: 174 SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 233
Query: 112 ----MIRKGFVPDKRTHTILV-----------------------------------NAWC 132
M +G T+TILV NA+C
Sbjct: 234 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYC 293
Query: 133 SSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE---------------- 176
+G MR A + L E G P R+ ++N K G + E
Sbjct: 294 RAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQI 353
Query: 177 TFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
FN++I+ C+ G ++G+ D+ T + + +DEA LL +
Sbjct: 354 IFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIM 413
Query: 224 VEDG----HKLFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+E G + + +L G +A F EM K P+ Y
Sbjct: 414 IEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTY 460
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ +++++ F K G ID A + N+ +A + + +N L F + M
Sbjct: 420 SYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM 479
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
RKG PD T L++ C +++ A L+++ +G +
Sbjct: 480 PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEI 539
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+ A+++VN+M+ QGS+ D T+NSLI+ +C++GE+ GL + I
Sbjct: 540 KEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNIL 599
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTH 252
I + + M++EA +V G F SL G+ +D F ++Q +
Sbjct: 600 INGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI 659
Query: 253 PPNRPVY 259
PP+ Y
Sbjct: 660 PPDTVTY 666
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 101/245 (41%), Gaps = 57/245 (23%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF-NKCTAFNCQQCVLLYNSLHVCFVR---- 111
P SV TL I F HG +D+A V + T++ V YNSL + +
Sbjct: 343 PKPTSVIFNTL---IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLV 399
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------- 154
M KG P+ ++TILV+ +C GK+ EA L E+S G P
Sbjct: 400 GLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCL 459
Query: 155 --------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GL 193
+ A ++ +M ++G PD+ TFNSLI +C+ E+ G+
Sbjct: 460 ISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 519
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFDDAFC 242
A+ T I A + I EA +L+ +V G L + SL G+ D A
Sbjct: 520 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARS 579
Query: 243 FFSEM 247
F +M
Sbjct: 580 LFEKM 584
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 79/188 (42%), Gaps = 45/188 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I F + G I A ++ N+ + YNSL +C F +M
Sbjct: 525 TYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+R G VP + IL+N C SG + EA EF +E M+ +GS
Sbjct: 585 LRDGLVPSSISCNILINGLCRSGMVEEAVEFQKE-------------------MVLRGST 625
Query: 173 PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD+ TFNSLI +C++G + G+ D T + + K + +A L
Sbjct: 626 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLL 685
Query: 220 LCNLVEDG 227
L +EDG
Sbjct: 686 LDEGIEDG 693
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 31/179 (17%)
Query: 33 RTLNRLNLTLISELSMWKT---IELMKPDSLSVFP-QTLSLIIEEFGKHGLIDNAVEVFN 88
+T++RL + + E ++K I +M+ + FP QT L++E + N
Sbjct: 122 KTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLE-------MRNVYSCEP 174
Query: 89 KCTAFNCQQCVLLYNSLHVC----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
++N +L+ + H F M+ + P T +++ A C+ ++ A L
Sbjct: 175 TFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVL 234
Query: 145 QELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++++ G P V A Q++ +M G VPD ETFN +I +CK
Sbjct: 235 RDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK 293
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 34/189 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
+ +E +GL+ N V F +C+ V+L + + +M+ + PD T+ L+
Sbjct: 228 LFDEMLDNGLVPNGV-TFTTLIDGHCKNGRVVLAMEI---YKQMLSQSLSPDLITYNTLI 283
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSV 172
C G +++AQ+ + E+S KG P + +A + +MIK+
Sbjct: 284 YGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIR 343
Query: 173 PDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRL 219
D + +LI +C+ G +GL ++ T + I K+ + +L
Sbjct: 344 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKL 403
Query: 220 LCNLVEDGH 228
L + DG+
Sbjct: 404 LKEMQRDGY 412
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G ++ A+E + N + +
Sbjct: 298 LIDEMSM----KGLKPDKI-----TYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVA 348
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y +L V +M+R+ G P+ T+T+++N +C G + + L+E+
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408
Query: 149 DKGFNPPV 156
G+ P V
Sbjct: 409 RDGYVPSV 416
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 34 TLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N + L+ + + I+L + + S P T +++ K G + +A +FN+
Sbjct: 845 TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEM 904
Query: 91 TAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ C+ +YN L +VC F +M+ +G PD +++T+L++ C++G++
Sbjct: 905 LEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRL 964
Query: 138 REAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSL 181
+ + ++L + G P + A + N+M K+G VP+L T+NSL
Sbjct: 965 NDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSL 1024
Query: 182 IETICKSGE 190
I + K+G+
Sbjct: 1025 ILHLGKAGK 1033
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 46/226 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +LI++ GK I+ + V + + + YN++ V+ +
Sbjct: 810 TYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNL 869
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ +GF P T+ L++ +GKM +A+ E+ + G P
Sbjct: 870 MSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNT 929
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ Q+ KM++QG PD++++ LI+T+C +G L + +S E ++
Sbjct: 930 ENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRL-------NDGLSYFRQLLELGLEPD 982
Query: 217 FRLLCNLVEDGHKLFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVY 259
++ NL+ DG LG+ ++A C F+EM+ K PN Y
Sbjct: 983 L-IIYNLLIDG------LGKSERIEEAVCLFNEMKKKGIVPNLYTY 1021
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 40/213 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
MK +S + + +I F K + D A+E+FN ++ C
Sbjct: 379 MKEKGISPEQYSYNSLISGFLKADMFDRALELFNH---------------MNAC------ 417
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
G P+ TH + +N + SG+ +A + + + KG P V +A +++ + + G +
Sbjct: 418 -GPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGM 476
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------- 227
+ + ++G+ D T + I SK DEA ++VE G
Sbjct: 477 AK------RVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLA 530
Query: 228 -HKLFPSL---GQFDDAFCFFSEM-QIKTHPPN 255
+ L +L G+ ++A+ F ++ ++K P N
Sbjct: 531 LNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTN 563
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ G VPD L++ GK EA + +L + P + +++ + +
Sbjct: 516 FSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGR 575
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL-------------GLCADVNT 199
+G V P+L T+N++++ + K+GE+ G D+++
Sbjct: 576 EGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSS 635
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
+ + KE +EAFR+ C +
Sbjct: 636 YNTVMYGLIKEERFEEAFRMFCQM 659
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 29/166 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY------------ 102
M D +S +T S+++ FGK +D + + N+ A + V Y
Sbjct: 204 MVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAAR 263
Query: 103 -NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL--SDK--------- 150
+ + +M G PD THT+++ C +G++ +A++ ++ SD+
Sbjct: 264 FDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYIT 323
Query: 151 -----GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
G + +S ++ N M+ G ++ ++ ++++ +C+ G L
Sbjct: 324 LLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRL 369
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 46/194 (23%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE---FLQELSDKGFNPPVRS------- 158
+ M+ G P RT+++L+ S GK R+ L E+ +G P V S
Sbjct: 201 YKAMVEDGISPSVRTYSVLM---VSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRV 257
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV----NTNKISIP 205
A Q++ KM G PD+ T +I+ +C +G L DV +
Sbjct: 258 LGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPD 317
Query: 206 AVSKEFMIDE---------AFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
V+ ++D+ + +V DG+ +G+ D+A F
Sbjct: 318 RVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFD 377
Query: 246 EMQIKTHPPNRPVY 259
EM+ K P + Y
Sbjct: 378 EMKEKGISPEQYSY 391
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------HVC-FVR 111
++ +++I+ G +++ + F + + +++YN L VC F
Sbjct: 949 KSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNE 1008
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +KG VP+ T+ L+ +GK EA + +EL KG+ P V + ++ GS
Sbjct: 1009 MKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGS 1068
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 64/256 (25%)
Query: 43 ISELSMWKTIELMKPD--SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
+ S W+ M + SL++ P T SL+I F K G + A V T +
Sbjct: 90 LCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPN 149
Query: 99 VLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
V+ Y+SL F MI KG PD ++ IL+N +C + ++ EA
Sbjct: 150 VVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEA----- 204
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
KQ+ N+MI QG PD+ ++N+LI+ +C+ G L G
Sbjct: 205 --------------KQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG 250
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC------- 242
D+ T I + K+ + +AFRL + L P++ ++ DA C
Sbjct: 251 NLPDLCTYSILLDGFCKQGYLAKAFRLFRAM--QSTYLKPNMVMYNILIDAMCKSRNLKE 308
Query: 243 ---FFSEMQIKTHPPN 255
FSE+ ++ PN
Sbjct: 309 ARKLFSELFVQGLQPN 324
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK--- 168
M+ +G+ PD T+T ++N C G+ A +++ + G P V + +++ + K
Sbjct: 1 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60
Query: 169 -------------QGSVPDLETFNSLIETIC 186
+G P++ T+NSLI+ +C
Sbjct: 61 VNEALDIFSYMKAKGISPNIFTYNSLIQGLC 91
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 90/251 (35%), Gaps = 57/251 (22%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
T + II K G A +F K CQ V+ Y+++ +C F
Sbjct: 11 HTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSY 70
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M KG P+ T+ L+ C+ + REA L E+ P + + ++N K+G+
Sbjct: 71 MKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGN 130
Query: 172 V----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V P++ T++SL+ E+ G DV + I
Sbjct: 131 VFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNI 190
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFP-------------SLGQFDDAFCFFSEMQI 249
I K I EA +L ++ G L P LG+ +A F M
Sbjct: 191 LINGYCKAKRIGEAKQLFNEMIHQG--LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLT 248
Query: 250 KTHPPNRPVYA 260
+ P+ Y+
Sbjct: 249 NGNLPDLCTYS 259
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 108/263 (41%), Gaps = 53/263 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ I+LMK ++ + +T ++++ + K GL AV FN+ + C+ + ++ +
Sbjct: 1198 WQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISS 1257
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
F ++ F PD +T LV+ WC +G + EA+ E+ G P V
Sbjct: 1258 LSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNV 1317
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG----------- 189
+ A + ++MI G P+ TFN+L+ K+G
Sbjct: 1318 YTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQ 1377
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-----------LGQ 236
LG D T I + ++ ++EA ++L N V+ G L S LG
Sbjct: 1378 MKRLGCPPDAITYNFLIESHCRDDNLEEAVKIL-NSVKKGCNLNASSFNPIFGCISKLGD 1436
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+ A F++M+ PN Y
Sbjct: 1437 VNSAHRMFAKMKDLKCRPNTVTY 1459
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 32/189 (16%)
Query: 34 TLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N + L+ + + I+L + S P T +++ K G I++A +FN+
Sbjct: 906 TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 965
Query: 91 TAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ C+ +YN L VC F M+ +G PD +++TI+++ C +G++
Sbjct: 966 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 1025
Query: 138 REAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSL 181
+ + ++L + G P + A + N+M K+G VP+L T+NSL
Sbjct: 1026 NDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSL 1085
Query: 182 IETICKSGE 190
I + K+G+
Sbjct: 1086 ILHLGKAGK 1094
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 46/215 (21%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFG--KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-- 108
ELMK S + P ++ FG K G + A VF++ A + Y + C
Sbjct: 508 ELMK--SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS 565
Query: 109 -----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
F MI VPD L++ +G+ EA + +L + P
Sbjct: 566 KASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDG 625
Query: 158 SAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL---------- 191
+ ++ + ++G V P+L T+N++++ +CK+G +
Sbjct: 626 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 685
Query: 192 ---GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
G D+++ I + KE +EAF + C +
Sbjct: 686 TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 720
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M RKG+ T+ +++ S ++ +A + L +GF+P + +++ ++K G
Sbjct: 895 MHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGR 954
Query: 172 VPDLET-FNSLIETICKSG----------------------------ELGLCADVNTNKI 202
+ D E FN ++E CK+ + G+ D+ + I
Sbjct: 955 IEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTI 1014
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSLGQ---FDDAFCFFSEMQIKT 251
I + K +++ L+E G + L LG+ ++A F+EMQ K
Sbjct: 1015 IIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKG 1074
Query: 252 HPPNRPVY 259
PN Y
Sbjct: 1075 IVPNLYTY 1082
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 35/241 (14%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
S + +W MK D + + +I+ + G + A+E+F++ YN
Sbjct: 397 SVMEIWNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 453
Query: 104 SLHVCFVRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
SL F++ R G P+ TH + +N + SG+ +A + + + K
Sbjct: 454 SLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 513
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLE-TFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
G P V + ++ + K G + + F+ L +G+ D T + I SK
Sbjct: 514 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL-------KAMGVSPDTITYTMMIKCCSK 566
Query: 210 EFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPV 258
DEA ++ +++E+ + L +L G+ D+A+ F +++ P
Sbjct: 567 ASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGT 626
Query: 259 Y 259
Y
Sbjct: 627 Y 627
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 49/187 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +L+I+ GK ++ AV +FN+ M +KG VP+ T+
Sbjct: 1046 TYNLLIDGLGKSKRLEEAVSLFNE----------------------MQKKGIVPNLYTYN 1083
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQ 169
L+ +GK EA + +EL KG+ P V SA +MI
Sbjct: 1084 SLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG 1143
Query: 170 GSVPDLET--FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI--DEAFRLLCNLVE 225
G +P+ T + L++T K D ++ +I + ++ E M+ A++ + E
Sbjct: 1144 GCLPNSSTCHIHELMKTFLK-------GDSDSYEIIVTFINAEGMLAYSRAWKFCISSRE 1196
Query: 226 DGHKLFP 232
D + P
Sbjct: 1197 DNGCVHP 1203
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 22/105 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQE---FLQELSDKGFNPPVRS---------- 158
M+ G VP RT+++L+ A+ GK R+ + L+E+ G P V S
Sbjct: 265 MMVDGVVPSVRTYSVLMVAF---GKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQ 321
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A +++ +M +G PD+ T LI+ +C +G + DV
Sbjct: 322 ARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDV 366
>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 418
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E+ DKG P
Sbjct: 182 IKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
I KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 IMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDV 397
>gi|357140802|ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Brachypodium distachyon]
Length = 501
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 53/267 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+MW+ +E M + LS+ +T L+I G+ GL VE F K ++FN + +N+ L
Sbjct: 194 AMWRLLEEMTENGLSISARTFHLLICTCGQAGLRRRLVERFIKSSSFNYRPFRNSFNAIL 253
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H +M+ +G PD T+ I++ A GK+ + L E+ G
Sbjct: 254 HTLLTIEQYSLIEWVHQKMLMEGHSPDVLTYNIVMRAKYMLGKLDQFHRLLDEMGKNGLT 313
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-- 195
P + + A ++N M G VP + F +LI+ + ++G L C
Sbjct: 314 PDLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCVPSVLHFTNLIDGLSRAGNLEACKYF 373
Query: 196 -----------DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPS 233
DV + I ++EA +L +++ G +
Sbjct: 374 FDEMMKKGCEPDVVCYTVMITGYVAAAELEEAQKLFDDMLVRGKLPNVYTYNTMIRGLCI 433
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+G+FD A +M ++ PN VY+
Sbjct: 434 VGEFDKACSMLKDMDLRGCTPNFSVYS 460
>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
Length = 543
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 30/215 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ + + G++DNA++V + V YN+L R MI KG
Sbjct: 313 MIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKG 372
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P+ T+T L++ C G M EA+ +E++ KG P V + M++ IK+GS+ + E
Sbjct: 373 VPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAE 432
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK------- 229
F +E + GL DV T + +D A +L + G +
Sbjct: 433 RFRKEME------KKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYT 486
Query: 230 -LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
L L G+ ++AF + +M P+ +Y+
Sbjct: 487 ALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYS 521
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 42/201 (20%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
SV P S++++ F K G +D+A + ++ + L YNSL C+VR
Sbjct: 129 SVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQE 188
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------ 155
M G T+TILV++ ++G + + + + E+ K
Sbjct: 189 LLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYC 248
Query: 156 ----VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKIS---- 203
VR A ++ ++ + G P+ T+ LI CK G++ L AD+ +
Sbjct: 249 RAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQI 308
Query: 204 -----IPAVSKEFMIDEAFRL 219
I ++ M+D A ++
Sbjct: 309 IFNTMIDGYCRQGMVDNALKV 329
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/298 (19%), Positives = 104/298 (34%), Gaps = 92/298 (30%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E+M+ + T +++++ G I V ++ A N V LY ++ + R
Sbjct: 190 LEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCR 249
Query: 112 M-------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------- 151
+ G P++RT+ +L+N +C G+M A+ L ++ +G
Sbjct: 250 AGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQII 309
Query: 152 FNPPVRS--------------------------------------------AKQMVNKMI 167
FN + AK +++ MI
Sbjct: 310 FNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMI 369
Query: 168 KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
++G P+ T+ +LI CK G++ G V T + + K+ I
Sbjct: 370 EKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIR 429
Query: 215 EAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
EA R + + G L P + G+ D A F EM+ + PN Y
Sbjct: 430 EAERFRKEMEKKG--LVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAY 485
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 31/188 (16%)
Query: 28 DIYAERTLNRLNLTLISELSMWKTI-ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEV 86
D+Y TL L ++ ++ KT+ +M + T + +I K G + A +
Sbjct: 341 DVYTYNTLA-CGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRL 399
Query: 87 FNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCS 133
F + V+ YN + +++ M +KG VPD T+ LV+ C
Sbjct: 400 FREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCV 459
Query: 134 SGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLET 177
+GK+ A + +E+ +G P V A Q+ + M+K G PD
Sbjct: 460 NGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSL 519
Query: 178 FNSLIETI 185
+++L+ ++
Sbjct: 520 YSALVGSL 527
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 87/227 (38%), Gaps = 34/227 (14%)
Query: 48 MWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWK I+ M + + V P LS ++ G ++ A+ +F + CQ YNS+
Sbjct: 142 MWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMI 201
Query: 106 ------------HVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M +G PD T++ L++A+C G+ A + L E+ D G
Sbjct: 202 IMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGM 261
Query: 153 NPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
P + +V K V L F + C+ DV T I + K
Sbjct: 262 QPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCR-------PDVFTYTELIRGLGKAG 314
Query: 212 MIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEM 247
IDEA+ + +G + G+ DDA F EM
Sbjct: 315 RIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEM 361
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 50/216 (23%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
+PD++ ++ +I GK G +D+A+++F + C V+ YN++
Sbjct: 332 RPDTI-----VMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSR 386
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F RM G P T++IL++ +C + +M +A L+E+ +KGF PP +A
Sbjct: 387 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYC 445
Query: 162 MVNKMIKQGSVPDL--ETFNSL---------------IETICKSG-------------EL 191
+ + + DL E F L I+ + K+G +L
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKL 505
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G DV + +++ M+DEA + + E G
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 541
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 45/215 (20%)
Query: 61 SVFPQTL---SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------ 111
S +P +L ++++ F K I A VF+ T + + V+ YN+L ++R
Sbjct: 118 SGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 177
Query: 112 -------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------- 154
M G PD T+++L+N C KM +A E E+ KG P
Sbjct: 178 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID 237
Query: 155 ------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCA 195
V A ++ +M+ Q +PDL T+N+LI +CK G+L GL
Sbjct: 238 GHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 297
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
D T I KE +D AF ++++ +L
Sbjct: 298 DKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRL 332
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + + ++ YN+L H M
Sbjct: 231 TFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 290
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 291 SMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 350
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 351 VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 385
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
LI E+SM + +KPD + T + +I+ K G +D A E + N + +
Sbjct: 286 LIDEMSM----KGLKPDKI-----TYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 336
Query: 102 YNSL---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
Y +L V +M+R+ G PD RT+T+++N +C G + + + L+E
Sbjct: 337 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 394
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 64/247 (25%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
K +E M +L+ T +++I+ K G +D AV + +K C + YNSL +
Sbjct: 67 KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGL 125
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C M+ G +PD T+T L+ +C S K +A ++L +GF P V
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185
Query: 157 ----------------RSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGELGLCADVNT 199
+ A + +MIK GS +P+ T+NSLI C+ G++
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM-------- 237
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQ 248
DEA LL + E G F L + DDA+ ++M
Sbjct: 238 --------------DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMT 283
Query: 249 IKTHPPN 255
K P+
Sbjct: 284 RKGLTPD 290
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M+ KGF PD T+T +++A C ++ EA++FL+E++++ P V + +++ + K G
Sbjct: 36 KMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGG 95
Query: 171 S---------------VPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
VP T+NSLI +CK+ G D+ T
Sbjct: 96 RVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK 229
I K D+A R+ LV G +
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFR 182
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 41/175 (23%)
Query: 58 DSLSVFPQ-----------TLSLIIEEFGKHGLIDNAVEVFNK-CTAFNCQQCVLLYNSL 105
D+L VF Q T S +I+ K G + A+++F + + +C + YNSL
Sbjct: 168 DALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSL 227
Query: 106 HVCFVRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
F RM + G PD T+T L+N +C ++ +A + L +++ KG
Sbjct: 228 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287
Query: 153 NPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
P V A ++ +M ++ P + T+N++++ C++ +L
Sbjct: 288 TPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQL 342
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 42/210 (20%)
Query: 59 SLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S S P T++ +I F + G +D A+ + + V+ Y +L F +
Sbjct: 214 SGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLD 273
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M RKG PD T T L++ C ++ +A L E+ K +P V + ++
Sbjct: 274 DAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTIL 333
Query: 164 NKMIKQGSV--------------PDLETFNSLIETICK----SGELGLCADVNTNKIS-- 203
+ + + P++ +FN +I +CK S + L + + +
Sbjct: 334 DGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393
Query: 204 -------IPAVSKEFMIDEAFRLLCNLVED 226
I + +E +DEA R+ ++E+
Sbjct: 394 VVMYTTVIDGLCREKKVDEACRVYRKMLEE 423
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T+T L+ C ++ +A FL ++ KGF+P V + A++ + +M
Sbjct: 13 TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72
Query: 167 IKQGSVPDLETFNSLIETICKSGEL 191
+ P++ T+ LI+ +CK G +
Sbjct: 73 ANRNLTPNVVTYTVLIDGLCKGGRV 97
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 106/260 (40%), Gaps = 64/260 (24%)
Query: 43 ISELSMWKTIE--LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
+ S WK L + SL++ P T +++++ F K G + A V T +
Sbjct: 160 LCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPD 219
Query: 99 VLLYNSLHV-------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
V+ YNSL F MI KG PD +++IL+N +C + ++ EA
Sbjct: 220 VVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEA----- 274
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
KQ+ N+MI QGS P+ ++N+LI +C+ G L G
Sbjct: 275 --------------KQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNG 320
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDD 239
++ T I + K+ + +AFRL + L P+L G D
Sbjct: 321 NLPNLYTYAILLDGFCKQGYLGKAFRLFRAM--QSTYLKPNLVMYNILVNAMCKSGNLKD 378
Query: 240 AFCFFSEMQIKTHPPNRPVY 259
A FSE+ + PN +Y
Sbjct: 379 ARELFSELFVIGLQPNVQIY 398
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 92/228 (40%), Gaps = 68/228 (29%)
Query: 41 TLISELSMW-------KTIELM-----KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN 88
+L+ SMW K ++M KPD S S++I + K ID A ++FN
Sbjct: 225 SLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSY-----SILINGYCKAKRIDEAKQLFN 279
Query: 89 KCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
+ MI +G P+ ++ L++ C G++REAQ+ + +
Sbjct: 280 E----------------------MIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMH 317
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL- 191
G P + + +++ KQG + P+L +N L+ +CKSG L
Sbjct: 318 TNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLK 377
Query: 192 ------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
GL +V I + KE ++DEA N+ +DG
Sbjct: 378 DARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDG 425
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I GK G AVE+F+ A CQ Y ++ +C F +M
Sbjct: 47 TFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKM 106
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
G + T++ L+++ C ++ EA + + K +P +
Sbjct: 107 EEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRW 166
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
+ A ++N+M +P++ TFN L++T CK G E+G+ DV T
Sbjct: 167 KEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSL 226
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTH 252
+ S + EA +L ++ G K + + D+A F+EM +
Sbjct: 227 MYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGS 286
Query: 253 PPNRPVY 259
PN Y
Sbjct: 287 TPNNVSY 293
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 90/249 (36%), Gaps = 55/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + II K G A +F K CQ V+ Y++L +C F M
Sbjct: 82 TYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYM 141
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
K P T+T L+ C+ + +EA L E++ P V + +V+ K+G V
Sbjct: 142 KAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKV 201
Query: 173 ----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
PD+ T+NSL+ E+ G DV + I
Sbjct: 202 LAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSIL 261
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKT 251
I K IDEA +L ++ G H L LG+ +A F M
Sbjct: 262 INGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGL-CQLGRLREAQDLFKNMHTNG 320
Query: 252 HPPNRPVYA 260
+ PN YA
Sbjct: 321 NLPNLYTYA 329
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ F K G + A +F + + +++YN
Sbjct: 327 TYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYN---------------------- 364
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIET 184
ILVNA C SG +++A+E EL G P V+ ++N + K+G + + LE F ++ +
Sbjct: 365 ILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDD 424
Query: 185 ICKSGEL 191
C E
Sbjct: 425 GCPPDEF 431
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 64/247 (25%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
K +E M +L+ T +++I+ K G +D AV + +K C + YNSL +
Sbjct: 67 KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGL 125
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C M+ G +PD T+T L+ +C S K +A ++L +GF P V
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185
Query: 157 ----------------RSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGELGLCADVNT 199
+ A + +MIK GS +P+ T+NSLI C+ G++
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM-------- 237
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQ 248
DEA LL + E G F L + DDA+ ++M
Sbjct: 238 --------------DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMT 283
Query: 249 IKTHPPN 255
K P+
Sbjct: 284 RKGLTPD 290
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M+ KGF PD T+T +++A C ++ EA++FL+E++++ P V + +++ + K G
Sbjct: 36 KMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGG 95
Query: 171 S---------------VPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
VP T+NSLI +CK+ G D+ T
Sbjct: 96 RVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK 229
I K D+A R+ LV G +
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFR 182
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 41/175 (23%)
Query: 58 DSLSVFPQ-----------TLSLIIEEFGKHGLIDNAVEVFNK-CTAFNCQQCVLLYNSL 105
D+L VF Q T S +I+ K G + A+++F + + +C + YNSL
Sbjct: 168 DALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSL 227
Query: 106 HVCFVRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
F RM + G PD T+T L+N +C ++ +A + L +++ KG
Sbjct: 228 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287
Query: 153 NPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
P V A ++ +M ++ P + T+N++++ C++ +L
Sbjct: 288 TPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQL 342
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 42/210 (20%)
Query: 59 SLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S S P T++ +I F + G +D A+ + + V+ Y +L F +
Sbjct: 214 SGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLD 273
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M RKG PD T T L++ C ++ +A L E+ K +P V + ++
Sbjct: 274 DAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTIL 333
Query: 164 NKMIKQGSV--------------PDLETFNSLIETICK----SGELGLCADVNTNKIS-- 203
+ + + P++ +FN +I +CK S + L + + +
Sbjct: 334 DGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393
Query: 204 -------IPAVSKEFMIDEAFRLLCNLVED 226
I + +E +DEA R+ ++E+
Sbjct: 394 VVMYTTVIDGLCREKKVDEACRVYRKMLEE 423
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T+T L+ C ++ +A FL ++ KGF+P V + A++ + +M
Sbjct: 13 TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72
Query: 167 IKQGSVPDLETFNSLIETICKSGEL 191
+ P++ T+ LI+ +CK G +
Sbjct: 73 ANRNLTPNVVTYTVLIDGLCKGGRV 97
>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 596
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 97/237 (40%), Gaps = 30/237 (12%)
Query: 47 SMWKTIELMKPD-SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W +E M+ D S+ + + ++I F L++ A+EV ++ + C+ ++ L
Sbjct: 158 AVWALLEEMRKDNSVLITSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCL 217
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+R F P R T L+ WC GK+ EA+ L ++ + GF
Sbjct: 218 LDALCKNGSVKQAASLFEDMRVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFE 277
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
P + +++ G + D F+ L E + K E + N+ I I A + +
Sbjct: 278 PDIVVFNNLLSAYSMAGKMTD--AFDLLKEMVRKGCE----PNANSYTIMIQAFCSQEKM 331
Query: 214 DEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
DEA R+ + G + F G+ + + M+ K H PN+ Y
Sbjct: 332 DEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTY 388
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
FV M R G D T+T L++ +C GK+ + L + KG P + +++
Sbjct: 338 FVEMERTGCEADVVTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEK 397
Query: 164 -----------NKMIKQGSVPDLETFNSLIETICKSGEL 191
M G VPDL +N +I CK GE+
Sbjct: 398 KEELEECLELIESMRMVGCVPDLSIYNVVIRLACKLGEV 436
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 47/241 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+ELM+ LS +T + +I+ + K + A+ V NK V+ YNSL
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
+ M +G VPD+ T+T ++++ C S ++ EA + L KG NP
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVM 534
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
V A M+ KM+ + +P+ TFN+LI +C G+L + +
Sbjct: 535 YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMV 594
Query: 203 SI---PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
I P VS + + L+ L++D G FD A+ F +M P+ Y
Sbjct: 595 KIGLQPTVSTDTI------LIHRLLKD--------GDFDHAYSRFQQMLSSGTKPDAHTY 640
Query: 260 A 260
Sbjct: 641 T 641
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 52/221 (23%)
Query: 77 HGL-----IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK-------------GFV 118
HGL ID A+++F K C V Y L RK G
Sbjct: 296 HGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK 355
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
P+ T+T+L+++ CS K +A+E L ++ +KG P V + ++N K+G +
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415
Query: 173 ----------PDLETFNSLIETICKSG---ELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
P+ T+N LI+ CKS +G+ + K+ V+ +ID R
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR- 474
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G FD A+ S M + P++ Y
Sbjct: 475 --------------SGNFDSAYRLLSLMNDRGLVPDQWTYT 501
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M+ G PD T+T + +C G++ +A++ M+ KM +
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED-------------------MMAKMRE 665
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADV 197
G PDL T++SLI+ G+ DV
Sbjct: 666 NGVSPDLFTYSSLIKGYGDLGQTNFAFDV 694
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 46/223 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 130 ESLECGYPASLYFF----NILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGY 185
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM + E E+ D G P
Sbjct: 186 IKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNG 245
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 246 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDE 305
Query: 192 ----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE ++ AF ++++ +L
Sbjct: 306 MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRL 348
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 57/195 (29%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLVTYN 284
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-------- 177
L+ C G +++AQ+ + E+S KG P + +++ K+G DLET
Sbjct: 285 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEG---DLETAFEYRXRM 341
Query: 178 -----------FNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMI 213
+ +LI +C+ G +GL ++ T + I K+ +
Sbjct: 342 IKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 401
Query: 214 DEAFRLLCNLVEDGH 228
+L+ + DG+
Sbjct: 402 WTGSKLMKEMQRDGY 416
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI++ D +T L++ C G+ +A++ L+E+ G P + + ++N+ K+G
Sbjct: 340 RMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKG 399
Query: 171 SV----------------PDLETFNSLI 182
V P + T+N L+
Sbjct: 400 DVWTGSKLMKEMQRDGYVPSVVTYNVLM 427
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 32/189 (16%)
Query: 34 TLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N + L+ + + I+L + S P T +++ K G I++A +FN+
Sbjct: 952 TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 1011
Query: 91 TAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ C+ +YN L VC F M+ +G PD +++TI+++ C +G++
Sbjct: 1012 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 1071
Query: 138 REAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSL 181
+ + ++L + G P + A + N+M K+G VP+L T+NSL
Sbjct: 1072 NDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSL 1131
Query: 182 IETICKSGE 190
I + K+G+
Sbjct: 1132 ILHLGKAGK 1140
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 46/215 (21%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFG--KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-- 108
ELMK S + P ++ FG K G + A VF++ A + Y + C
Sbjct: 554 ELMK--SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCS 611
Query: 109 -----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
F MI VPD L++ +G+ EA +L + P
Sbjct: 612 KASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDG 671
Query: 158 SAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL---------- 191
+ ++ + ++G V P+L T+N++++ +CK+G +
Sbjct: 672 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 731
Query: 192 ---GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
G D+++ I + KE +EAF + C +
Sbjct: 732 TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 766
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 53/234 (22%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHT 125
LID A +F + C YN L + M RKG+ T+
Sbjct: 895 LIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYN 954
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-FNSLIET 184
+++ S ++ +A + L +GF+P + +++ ++K G + D E FN ++E
Sbjct: 955 TIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEY 1014
Query: 185 ICKSG----------------------------ELGLCADVNTNKISIPAVSKEFMIDEA 216
CK+ + G+ D+ + I I + K +++
Sbjct: 1015 GCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDG 1074
Query: 217 FRLLCNLVEDGHK--------LFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVY 259
L+E G + L LG+ ++A F+EMQ K PN Y
Sbjct: 1075 LTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTY 1128
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 96/253 (37%), Gaps = 59/253 (23%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
S + +W MK D + + +I+ + G + A+E+F++ YN
Sbjct: 443 SVMEIWNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 499
Query: 104 SLHVCFVRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
SL F++ R G P+ TH + +N + SG+ +A + + + K
Sbjct: 500 SLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 559
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-------------DV 197
G VPD+ N+++ + KSG LG+ D
Sbjct: 560 GI-------------------VPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDT 600
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSE 246
T + I SK DEA ++ +++E+ + L +L G+ D+A+ F +
Sbjct: 601 ITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQ 660
Query: 247 MQIKTHPPNRPVY 259
++ P Y
Sbjct: 661 LKEMNLEPTDGTY 673
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY---------- 102
+M D + +T S+++ FGK ++ + + + A + V Y
Sbjct: 309 RVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQA 368
Query: 103 ---NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL--SDK------- 150
+ + +M +G PD THT+L+ C +G++ +A++ ++ SD+
Sbjct: 369 KRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTY 428
Query: 151 -------GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS 203
G N +S ++ N M G ++ + ++I+ +C+ G + ++
Sbjct: 429 ITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEM------ 482
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ ++ ++ E + N + G F +F DA F M I PN
Sbjct: 483 FDEMKQKGIVPEQYSY--NSLISG---FLKADRFGDALELFKHMDIHGPKPN 529
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +L+I+ GK ++ AV +FN+ M +KG VP+ T+
Sbjct: 1092 TYNLLIDGLGKSKRLEEAVSLFNE----------------------MQKKGIVPNLYTYN 1129
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
L+ +GK EA + +EL KG+ P V + ++ GS
Sbjct: 1130 SLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGS 1175
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 63/253 (24%)
Query: 48 MWKTI-ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWK I E+++ + + P LS +++ GK +++ A+ VF + + C+ YNS+
Sbjct: 114 MWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMI 173
Query: 106 ------------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M +G PD T+++LV+A+ G+ A E+ G
Sbjct: 174 LMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGL 233
Query: 153 NPPVR---------------SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+P + A +V +M +G P + T+ LI+ + KSG
Sbjct: 234 HPTAKIYTTLLAIYFKSGDEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGR------- 286
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSE 246
+++A+ + N+++DG K +F G+ +DA F +
Sbjct: 287 ---------------VEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQ 331
Query: 247 MQIKTHPPNRPVY 259
M+ PN Y
Sbjct: 332 MRSLKCAPNVVTY 344
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 49/204 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVRMIRK 115
+I FGK G +++A+++F++ + C V+ YN++ F +M
Sbjct: 312 LINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKAN 371
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G P T++IL++ +C + ++ +A L+E+ +KGF P + ++N + G
Sbjct: 372 GVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINAL---GKAKRY 428
Query: 176 ETFNSL-------------------IETICKSG-------------ELGLCADVNTNKIS 203
E N L I+ + K G ++G DV
Sbjct: 429 EAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNAL 488
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
+ + + MI+EAF L + E+G
Sbjct: 489 MSGLVRAGMIEEAFSALRTMEENG 512
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--MIRKGF-------- 117
+++I+ GK G AV++FN+ C V YN+L VR MI + F
Sbjct: 451 AVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEE 510
Query: 118 ---VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
PD +H I++N +G+ +A E ++ D P S
Sbjct: 511 NGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEE 570
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++ +M +G D T++S++E + K E
Sbjct: 571 AAKLMREMGSRGFEYDHITYSSILEAVGKVDE 602
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 46/222 (20%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV 110
++E P SL F ++++ F K G I A VF+ T + + + +N+L ++
Sbjct: 127 SLECGYPASLYFF----NILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYI 182
Query: 111 R-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--- 154
R M G PD T+++L+N C KM A E E+ D G P
Sbjct: 183 RLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGV 242
Query: 155 -------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL---------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 192 ---GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE ++ AF ++++ +L
Sbjct: 303 SMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 57/195 (29%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-------- 177
L+ C G +++AQ+ + E+S KG P + +++ K+G DLET
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEG---DLETAFEYRKRM 337
Query: 178 -----------FNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMI 213
+ +LI +C+ G +GL ++ T + I K+ +
Sbjct: 338 IKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
Query: 214 DEAFRLLCNLVEDGH 228
+L+ + DG+
Sbjct: 398 WTGSKLMKEMQRDGY 412
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++++ F K G + A V + V+ YNSL F M
Sbjct: 179 TFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTM 238
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------RSAK- 160
+ G PD ++++IL+N +C M EA E L+E+ K P V +S K
Sbjct: 239 AQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKI 298
Query: 161 ----QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
++V++M +G P++ T++S+++ +CK+ ++ G+ ++ T I
Sbjct: 299 SYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTIL 358
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTH 252
I + + +++A ++ +L+ GH L F G FD+A S+M+
Sbjct: 359 IKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGC 418
Query: 253 PPNRPVY 259
PN Y
Sbjct: 419 IPNAKTY 425
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 27/168 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK--M 166
F +MI + PD T TILV+ +C G+++EA+ L + +G P V + +++ +
Sbjct: 165 FNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFL 224
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+KQ + FN++ +LG+ D+ + I I K M+DEA L L E
Sbjct: 225 VKQVNKAK-SIFNTM-------AQLGVSPDIQSYSILINGFCKIKMMDEAMEL---LKEM 273
Query: 227 GHK-LFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
HK + P++ G+ A EM + PPN Y+
Sbjct: 274 HHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYS 321
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+M +G P+ T+TIL+ C SGK+ +A++ ++L KG N V +
Sbjct: 340 LTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCD 399
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++KM G +P+ +T+ +I ++ K E
Sbjct: 400 KGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDE 437
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++++ G+ P+ T L+ C +GK+ + + +L D A + NKMI
Sbjct: 120 LTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKD---------AVDLFNKMIL 170
Query: 169 QGSVPDLETFNSLIETICKSGEL 191
+ PD+ TF L++ CK G +
Sbjct: 171 ENINPDVYTFTILVDGFCKEGRV 193
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 42/210 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK-------- 115
T + + + K G +D A E+ ++ Q + YNSL +C IR+
Sbjct: 187 TYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEM 246
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
G PD T T L++A+C +G+M +A E L+E+ D+G P V
Sbjct: 247 EVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGML 306
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------GLCA-----DVNTNKIS 203
++++ M+++G +P+ T+NSL++ C + G+CA D NT I
Sbjct: 307 EDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNIL 366
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
I K + EA+ L + E G L S
Sbjct: 367 IKGHCKARNMKEAWFLHKEMAEKGFNLTAS 396
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 31/218 (14%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKC------------TAFNCQ--QCVLLYNS 104
+ P T+ + +I+ F K G I A ++F++ TA C +C + +
Sbjct: 75 GIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEA 134
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
V F +M +G PD+ T+T L++ +C SG+M +A ++ G P V + + +
Sbjct: 135 DKV-FNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALAD 193
Query: 165 KMIKQGSVPDLETFNSLIETICKSG-ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
+ K G V +T N L+ +C G +L +C T + + K I +A +L+ +
Sbjct: 194 GLCKLGQV---DTANELLHEMCGKGLQLNIC----TYNSLVNGLCKSGNIRQAVKLMEEM 246
Query: 224 VEDGHKLFPSLGQFD---DAFCFFSEMQIKTHPPNRPV 258
G ++P F DA+C EM +K H R +
Sbjct: 247 EVAG--MYPDTITFTTLMDAYCKTGEM-VKAHELLREM 281
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 16/93 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
+G PD +++ ++N +C G++++ + +QE+ KG P V
Sbjct: 4 RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++++ +MI QG VPD + +LI+ CK G +
Sbjct: 64 AERVLREMINQGIVPDTVVYTTLIDGFCKLGNI 96
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 44/178 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M KG P+ T+ ++ C SGK+ +A+ L+E+ ++G P
Sbjct: 36 MQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGN 95
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+++A ++ ++M KQ VPD + ++I +C+ G++ G+ D T
Sbjct: 96 IQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTT 155
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEM 247
I K +++AF L +V+ G L P+ LGQ D A EM
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMVQSG--LTPNVVTYTALADGLCKLGQVDTANELLHEM 211
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +G +PD T+ IL+ C + M+EA +E+++KGFN S
Sbjct: 351 MCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKK 410
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+++ +M ++G D E +N ++ G +
Sbjct: 411 ISEARELFEEMRREGMAADAEIYNLFVDISYGEGNM 446
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDN 82
N + H + + R L+ S L ++K +E VF T S I++ K G +D+
Sbjct: 188 NNIMHGLCSGRKLD-------SALQLFKEMEESGSCPPDVF--TYSTIVDSLVKSGKVDD 238
Query: 83 AVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVN 129
A + + C V+ Y+SL +C RM R G P+ T+ +++
Sbjct: 239 ACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIID 298
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVP 173
C G++ EA L+E+ D G P V A +V M+++G VP
Sbjct: 299 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVP 358
Query: 174 DLETFNSLIETICKSGEL 191
+L T+NSL++ CK E+
Sbjct: 359 NLFTYNSLLDMFCKKDEV 376
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 63/235 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++ F + G +D AVE+ K M +G+ P+ T+
Sbjct: 151 TYGTLVDGFCRVGDLDGAVELVRK----------------------MTERGYRPNAITYN 188
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP------------VRSAK-----QMVNKMIK 168
+++ CS K+ A + +E+ + G PP V+S K ++V M+
Sbjct: 189 NIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVS 248
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G P++ T++SL+ +CK+G+L G ++ T I K IDE
Sbjct: 249 KGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDE 308
Query: 216 AFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
A+ LL +V+ G + F G+ +DA M K + PN Y
Sbjct: 309 AYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTY 363
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 60/247 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVCFV--RMIRKG 116
++ F K ++NA+ + + C V+ Y ++ C V +MI++G
Sbjct: 85 VLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG 144
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAK 160
P+ T+ LV+ +C G + A E +++++++G+ P + SA
Sbjct: 145 CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSAL 204
Query: 161 QMVNKMIKQGSV-PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
Q+ +M + GS PD+ T++++++++ KSG++ G +V T +
Sbjct: 205 QLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHG 264
Query: 207 VSKEFMIDEAFRLL-------C-------NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
+ K +DEA LL C N + DGH LG+ D+A+ EM
Sbjct: 265 LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH---CKLGRIDEAYHLLEEMVDGGC 321
Query: 253 PPNRPVY 259
PN Y
Sbjct: 322 QPNVVTY 328
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + II+ K G ID A + + CQ V+ Y L F + M
Sbjct: 292 TYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 351
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--------- 163
+ KG+VP+ T+ L++ +C ++ A + L + KG P V S ++
Sbjct: 352 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 411
Query: 164 -------NKMIKQGSVPDLETFNSLIETICKS 188
+M+ VPD+ TFN++I+ +CK+
Sbjct: 412 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKT 443
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M++ GF P T+ L++ +C +G + +A E LQ L KG P V
Sbjct: 562 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 621
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
R A +++ M++ G VPD T+N+L++ C +
Sbjct: 622 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDA 654
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 97/249 (38%), Gaps = 56/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T + II+ K +D A E+FN C ++ YNSL +C R M
Sbjct: 432 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 491
Query: 113 IRK-GFVPDKRTHTILVNAWCSSGKMREAQE-FLQELSDKGFNPP--------------- 155
RK G PD T+ +++ C S ++ A + FLQ LSD G P
Sbjct: 492 TRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD-GLAPDDVTYSIVISSLCKWR 550
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A ++ M+K G P T+ +LI+ CK+G L G DV T
Sbjct: 551 FMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFS 610
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIK 250
I I +SK + +A LL ++ G K F + +DA F M+
Sbjct: 611 IFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQC 670
Query: 251 THPPNRPVY 259
P+ Y
Sbjct: 671 GCEPDNATY 679
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++++ F K G ++A+ + + YNSL F + M
Sbjct: 327 TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM 386
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
I+KG VP+ ++ ++ C + K+ E L+++ P + + +++ M K
Sbjct: 387 IQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRV 446
Query: 169 ------------QGSVPDLETFNSLIETICKSGEL--------------GLCADVNTNKI 202
G P+L T+NSL+ +CKS G D+ T
Sbjct: 447 DIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNT 506
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I + K +D A++L ++ DG
Sbjct: 507 VIDGLCKSKRVDRAYKLFLQMLSDG 531
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 57/197 (28%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A C VL + R + K PD T+ ++N S ++ +A L+E+ D
Sbjct: 21 CDAGQCSDAVLHF--------REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVD 72
Query: 150 KGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
GF P V S A ++ +M+ +G PD+ ++ ++I +CK +
Sbjct: 73 NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQ--- 129
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFC 242
+DEA R++ +++ G + F +G D A
Sbjct: 130 -------------------VDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVE 170
Query: 243 FFSEMQIKTHPPNRPVY 259
+M + + PN Y
Sbjct: 171 LVRKMTERGYRPNAITY 187
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 24/166 (14%)
Query: 42 LISELSMWK-------TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94
+IS L W+ +ELM + T +I+ F K G +D A+E+ +
Sbjct: 542 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 601
Query: 95 CQQCVLLYNSLHVCFVR--------------MIRKGFVPDKRTHTILVNAWCSSGKMREA 140
V+ + S+ + ++ M+R G VPD T+ L+ +C + + +A
Sbjct: 602 SYPDVVTF-SIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDA 660
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL--ETFNSLIET 184
+ + + G P + +V ++ + S DL E S+++T
Sbjct: 661 VDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDT 706
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 41/201 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRM 112
+KPD+ T +++I F K+ ++D F + T+F+C V+ YN+L +C
Sbjct: 222 VKPDTY-----TYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGK 276
Query: 113 IR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
I+ K PD T+T L+ +C ++ EA + L+E++ +G P + +
Sbjct: 277 IKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTY 336
Query: 160 KQMVNKMIKQ-----------------GSVPDLETFNSLIETICKSGELGLCADV--NTN 200
++ + + GS+PD TFN+LI + C +G L V N
Sbjct: 337 NTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMK 396
Query: 201 KISIPAVSKEFMIDEAFRLLC 221
K+ + A S + + R LC
Sbjct: 397 KLEVSADSASYSV--LIRTLC 415
>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 418
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 34/239 (14%)
Query: 48 MWKTI-ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWK I E+++ V P LS +I G +I A+ +F + A CQ YNS+
Sbjct: 142 MWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMI 201
Query: 106 ------------HVCFVRMIRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M +G PD T++ L++A+C G+ A L E+ + G
Sbjct: 202 IMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGM 261
Query: 153 NPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
P + +++ K +V L F + C+ DV T I + K
Sbjct: 262 QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRP-------DVFTYTELIRGLGKAG 314
Query: 212 MIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
IDEA+ + + K G+ DD F EM + PN Y
Sbjct: 315 RIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTY 373
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 51/219 (23%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
KPD++ ++ +I GK G +D+ +++F + +C V+ YN++
Sbjct: 332 KPDTV-----VMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSR 386
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F RM G P T++IL++ +C + ++ +A L+E+ +KGF PP +A
Sbjct: 387 VSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGF-PPCPAA-- 443
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
+ SLI+ + K+ L ++ KE + R+
Sbjct: 444 ----------------YCSLIDALGKAKRYDLACELFQE-------LKENCGSSSARVYA 480
Query: 222 NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
++ K G+ DDA F EM PN VYA
Sbjct: 481 VMI----KHLGKAGRLDDAINLFDEMSKLGCTPN--VYA 513
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 29/162 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+K + S + +++I+ GK G +D+A+ +F++ + C V YN+L R
Sbjct: 467 LKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACM 526
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
M G +PD ++ I++N +G A E L + + P S
Sbjct: 527 LDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNT 586
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +++ +M G DL T++S++E I K
Sbjct: 587 VLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGK 628
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 31/176 (17%)
Query: 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
+SE+ W E MK +S P T S++I+ F K I+ A+ + + C Y
Sbjct: 387 VSEVFSW--FERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAY 444
Query: 103 NSLHVCFVRMIRKGFV-------------PDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
SL + R R + +++ +G++ +A E+S
Sbjct: 445 CSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSK 504
Query: 150 KGFNPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSG 189
G P V + +++ KM + G +PD+ ++N ++ + K+G
Sbjct: 505 LGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTG 560
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 90/228 (39%), Gaps = 34/228 (14%)
Query: 48 MWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWK I+ M + + V P LS II G +I AV +F + A CQ YNS+
Sbjct: 138 MWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMI 197
Query: 106 ------------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M +G PD T++ L++A+C G+ A L E+ D G
Sbjct: 198 IMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGM 257
Query: 153 NPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
P + ++ + K +V L F + C+ DV T I + K
Sbjct: 258 QPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRP-------DVFTYTELIRGLGKAG 310
Query: 212 MIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQ 248
+DEA+ + +G + G+ DDA F EM+
Sbjct: 311 RLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEME 358
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 98/252 (38%), Gaps = 83/252 (32%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
+PD++ ++ +I GK G +D+A+++F + C V+ YN++
Sbjct: 328 RPDTV-----LMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSR 382
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
F RM G P T++IL++ +C + + +A L+E+ +KGF P
Sbjct: 383 VSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCS 442
Query: 155 ---PVRSAKQ-----------------------------------------MVNKMIKQG 170
+ AK+ + ++M + G
Sbjct: 443 LIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLG 502
Query: 171 SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
P++ +N+L+ + ++G L G D+N+ I + A++K D A
Sbjct: 503 CTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAM 562
Query: 218 RLLCNLVEDGHK 229
+LCN+ + K
Sbjct: 563 GMLCNMKQSAIK 574
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
+K + S + +++I+ GK G +D+AV++F++ C V YN+L
Sbjct: 463 LKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGM 522
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
RM G +PD ++ I++NA +G A L + P S
Sbjct: 523 LDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNT 582
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +++ +M G DL T++S++E I K
Sbjct: 583 VLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGK 624
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 31/157 (19%)
Query: 63 FPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------- 112
FP T+ S +I F K G D+A+ + N+ Q +Y L ++
Sbjct: 223 FPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALG 282
Query: 113 ----IRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
+R + PD T+T L+ +G++ EA F E+ +G P M+N +
Sbjct: 283 LFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLG 342
Query: 168 KQGS----------------VPDLETFNSLIETICKS 188
K G +P + T+N++I+ + +S
Sbjct: 343 KAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFES 379
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 53/248 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+ + K + ++ + + C+ + YN+L V+ M
Sbjct: 308 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM 367
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+R+ P T ++++ +C G++ A E Q ++D+G P + +
Sbjct: 368 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRI 427
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A+Q++ +M + G PD+ T+NS++ +CK+ ++ G DV T
Sbjct: 428 DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTL 487
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTH 252
I + K +D+A +LL + +G F Q D + FFSEM K
Sbjct: 488 IDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGC 547
Query: 253 PPNRPVYA 260
P Y+
Sbjct: 548 VPTVITYS 555
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 40/189 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M R G PD +TIL++ +C + ++ ++ F E+ DKG P
Sbjct: 507 MERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR 566
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
VR ++ M+++G PD + S+I+ +CKS + G V T +
Sbjct: 567 VRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNV 626
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKT 251
+ + K +DEA LL + DG + +F + D AF F M+ +
Sbjct: 627 LVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRG 686
Query: 252 HPPNRPVYA 260
P +Y+
Sbjct: 687 CSPTPFMYS 695
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+++E K G++ + V+N C + +H R +++ P T+TILV+
Sbjct: 189 LLDEMEKRGIVPHNA-VYNTIIKGLCDNGRVDSALVHY---RDMQRNCAPSVITYTILVD 244
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKS 188
A C S ++ +A L+++ + G P V + ++N K G++ + + FN ++E C
Sbjct: 245 ALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCS- 303
Query: 189 GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQF 237
DV T I I K+ + +LL +V+ G + L SL G++
Sbjct: 304 ------PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKY 357
Query: 238 DDAF 241
DAF
Sbjct: 358 IDAF 361
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 73/242 (30%)
Query: 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA--------FNCQQCVLLYNSLHVCFVRMI 113
+ P + ++++ +D AV+ F+ CT F C N L FVR
Sbjct: 97 LVPSVVGRVLQQLDD---LDKAVKFFDWCTGQPGYKHSKFTC-------NCLLSAFVRKK 146
Query: 114 ------------RKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
R G PD T++ L+N +C +A++F Q A
Sbjct: 147 KAQEAYDLFKNHRCGLCSPDSITYSTLINGFC------KARDFQQ-------------AY 187
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGL-----------CA-DVNTNKISIPAVS 208
+++++M K+G VP +N++I+ +C +G + CA V T I + A+
Sbjct: 188 RLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALC 247
Query: 209 KEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRP 257
K I +A +L +++E G F LG D+A F++M + P+
Sbjct: 248 KSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVF 307
Query: 258 VY 259
Y
Sbjct: 308 TY 309
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 57/239 (23%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
S I+EE K + + V FN C N Q ++L+ M++ G P+
Sbjct: 293 SEILEEMSKRRYVPDRV-TFNTLINGYCNVGNFHQALVLH-------AEMVKNGLSPNVV 344
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T+T L+N+ C +G + A EFL ++ D+G +P R+ A Q++ +M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404
Query: 167 IKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMI 213
++ G P + T+N+LI C G E G DV + I + +
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDD---AFC----------FFSEMQIKTHPPNRPVY 259
++AF+L +V G + P + + C F EM PP+ Y
Sbjct: 465 EKAFQLKVEMVAKG--ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTY 521
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 42/215 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HVC 108
++ M+ L +T + +I+ F + G + A ++ + ++ YN+L H
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425
Query: 109 FVRM----------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
RM I +GF+PD +++ +++ +C + ++ +A + E+ KG +P V +
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485
Query: 159 AKQMVNKMIKQ----------------GSVPDLETFNSLIETICKSGEL----------- 191
++ + KQ G PD T+ SLI C G+L
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI 545
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
G D+ T + I +K+ EA RLL L+
Sbjct: 546 QKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 44/174 (25%)
Query: 107 VC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------- 156
VC F M+ G PD+ T+T L+NA+C G + +A E+ KGF+P +
Sbjct: 502 VCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLIN 561
Query: 157 --------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
+ AK+++ K++ + SVP+ T+N+LI+ C + E S A+
Sbjct: 562 GFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDN-CNNLEFK----------SALALM 610
Query: 209 KEF----MIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEM 247
K F +++EA R+L ++++ G+KL +G + A+ + EM
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM 664
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 42/190 (22%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
CTA N + + F M R G +P+ T+ +++A+C K+ EA + L+ ++
Sbjct: 214 CTAGNLEMGLFF-------FGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMAL 266
Query: 150 KGFNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSGE--- 190
KG NP + S ++N + ++G VPD TFN+LI C G
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQ 326
Query: 191 -LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
L L A++ N +S V+ +I+ +C G + A F +M+
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINS----MC-----------KAGNLNRAMEFLDQMRD 371
Query: 250 KTHPPNRPVY 259
+ PN Y
Sbjct: 372 RGLHPNGRTY 381
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 41/221 (18%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------------MIR 114
L+++ + LI+ A+ + N ++ VL YN++ +R M+
Sbjct: 137 LVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVE 196
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK------ 168
G P+ T+ IL+ +C++G + F E+ G P V + +++ K
Sbjct: 197 SGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGE 256
Query: 169 ----------QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
+G P+L ++N +I +C+ G++ +++ + +SK + + R
Sbjct: 257 AFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI------LEEMSKRRYVPD--R 308
Query: 219 LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ N + +G + ++G F A +EM PN Y
Sbjct: 309 VTFNTLING---YCNVGNFHQALVLHAEMVKNGLSPNVVTY 346
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 87/227 (38%), Gaps = 34/227 (14%)
Query: 48 MWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
MWK I+ M + + V P LS ++ G ++ A+ +F + CQ YNS+
Sbjct: 142 MWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMI 201
Query: 107 VCFVRMIRKGFV--------------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+ + + G V PD T++ L++A+C G+ A + L E+ + G
Sbjct: 202 IMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGM 261
Query: 153 NPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
P + ++ K V L F + C+ DV T I + K
Sbjct: 262 QPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCR-------PDVFTYTELIRGLGKAG 314
Query: 212 MIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEM 247
IDEA+ + +G + G+ DDA F EM
Sbjct: 315 RIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEM 361
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 50/216 (23%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC------- 108
+PD++ ++ +I GK G +D+A+++F + C V+ YN++
Sbjct: 332 RPDTV-----VMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSR 386
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F RM G P T++IL++ +C + +M +A L+E+ +KGF PP +A
Sbjct: 387 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYC 445
Query: 162 MVNKMIKQGSVPDL--ETFNSL---------------IETICKSG-------------EL 191
+ + + DL E F L I+ + K+G +L
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 505
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G DV + +++ M+DEA + + E G
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 541
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
+K + S + +++I+ GK G +D+A+ +F++ C V YN+L
Sbjct: 467 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 526
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
RM G +PD ++ I++N +G A E L + P V S
Sbjct: 527 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 586
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +++ +M G DL T++S++E I K
Sbjct: 587 VLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGK 628
>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 418
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E+ DKG P
Sbjct: 182 IKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 39/206 (18%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEF 74
+ A + NI+ H E + RL ++ ++ W ++P +S + ++ +
Sbjct: 132 YPASLYFFNILMHSFVKEGEI-RLAQSVFDAITKWS----LRPSVVS-----FNTLMNGY 181
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDK 121
K G +D + N Q V Y+ L +V F M+ KG VP+
Sbjct: 182 IKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T T L++ C +G++ A E +++ + +P ++ A+ ++++
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL 191
MI +G PD T+ +LI+ CK G+L
Sbjct: 302 MIMKGLXPDKITYTTLIDGNCKEGDL 327
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
I KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 IMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDV 397
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 62/272 (22%)
Query: 28 DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF 87
D Y RTL T + + M + LM D + + +++I + K+ +D A+
Sbjct: 259 DAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAM--- 315
Query: 88 NKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
F+ M +KGF P+ T+T +++ C +G++ +A ++
Sbjct: 316 -------------------TAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQM 356
Query: 148 SDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE- 190
+G +P + + +++ +MI +G P+ N++++++CK G
Sbjct: 357 VSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRV 416
Query: 191 ------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL 234
+G+ DV + I I + +DE+ +LL +V G + + +L
Sbjct: 417 LEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSAL 476
Query: 235 -------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ DDA + EM K PN Y
Sbjct: 477 LNGYCKNGRVDDALALYREMFSKDVKPNAITY 508
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 50/261 (19%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT----------AFNC 95
+S++ T+ + + L+ T ++I F GL+D A+E ++ + +NC
Sbjct: 76 VSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNC 135
Query: 96 QQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142
VL YN + + F M+ +GF P+ T+ +++ C + M +A+
Sbjct: 136 PPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEA 195
Query: 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG------------- 189
LQ++ DKG + A +++ KM G PD+ T++ LI+ CK G
Sbjct: 196 VLQQMFDKG---QLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMV 252
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFD 238
G D T + + + + + + LL +++DG L + D
Sbjct: 253 RRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLD 312
Query: 239 DAFCFFSEMQIKTHPPNRPVY 259
A F EM+ K PN Y
Sbjct: 313 KAMTAFIEMRQKGFSPNVVTY 333
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 40/195 (20%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
H F ++I G PD ++TIL++ +C GKM E+ + L + G P + ++N
Sbjct: 420 HDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNG 479
Query: 166 MIKQGSV----------------PDLETFNSLIETICKSGEL-------------GLCAD 196
K G V P+ T+N ++ + +G + G+
Sbjct: 480 YCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLG 539
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFS 245
+NT I + + + +DEA R+ L +L +G+ DA FS
Sbjct: 540 INTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFS 599
Query: 246 EMQIKTHPPNRPVYA 260
+ P+ +Y
Sbjct: 600 AILPSGLVPDAIIYG 614
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 99/247 (40%), Gaps = 48/247 (19%)
Query: 51 TIELMKPDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS---- 104
+ +M D + P LS ++I K G +D A +F++ ++ YNS
Sbjct: 124 AVHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDG 183
Query: 105 -------------LHVCF--------VRMIRK----GFVPDKRTHTILVNAWCSSGKMRE 139
L F VR+++K G PD T+++L++ +C G+ E
Sbjct: 184 LCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTE 243
Query: 140 AQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199
A+ + +G NP + + +++ +G++ D+ +L+ + G+ + +
Sbjct: 244 ARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMI------QDGIPLEDHV 297
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQ 248
I I A +K +D+A + + G + G+ +DA FS+M
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357
Query: 249 IKTHPPN 255
+ P+
Sbjct: 358 SEGLSPD 364
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 24/186 (12%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN-SLHVCF---- 109
++PD++ T S ++ + K+G +D+A+ ++ + + + + + YN LH F
Sbjct: 466 LRPDNV-----TYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGR 520
Query: 110 --------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
++++ G T+ I++ C + + EA Q L K F VR+
Sbjct: 521 VVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNI 580
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
M+ ++K G + D + SL I S GL D + I + +E +++E+ L
Sbjct: 581 MIVGLLKVGRIGDAK---SLFSAILPS---GLVPDAIIYGLMIQSHIEEGLLEESDELFL 634
Query: 222 NLVEDG 227
++ ++G
Sbjct: 635 SMEKNG 640
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 57/239 (23%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
S I+EE K + + V FN C N Q ++L+ M++ G P+
Sbjct: 293 SEILEEMSKRRYVPDRV-TFNTLINGYCNVGNFHQALVLH-------AEMVKNGLSPNVV 344
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T+T L+N+ C +G + A EFL ++ D+G +P R+ A Q++ +M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404
Query: 167 IKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMI 213
++ G P + T+N+LI C G E G DV + I + +
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
++AF+L +V G + P + + C F EM PP+ Y
Sbjct: 465 EKAFQLKVEMVAKG--ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTY 521
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 42/215 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HVC 108
++ M+ L +T + +I+ F + G + A ++ + ++ YN+L H
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425
Query: 109 FVRM----------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
RM I +GF+PD +++ +++ +C + ++ +A + E+ KG +P V +
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485
Query: 159 AKQMVNKMIKQ----------------GSVPDLETFNSLIETICKSGEL----------- 191
++ + KQ G PD T+ SLI C G+L
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI 545
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
G D+ T + I +K+ EA RLL L+
Sbjct: 546 QKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 44/174 (25%)
Query: 107 VC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------- 156
VC F M+ G PD+ T+T L+NA+C G + +A E+ KGF+P +
Sbjct: 502 VCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLIN 561
Query: 157 --------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
+ AK+++ K++ + SVP+ T+N+LI+ C + E S A+
Sbjct: 562 GFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDN-CNNLEFK----------SALALM 610
Query: 209 KEF----MIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEM 247
K F +++EA R+L ++++ G+KL +G + A+ + EM
Sbjct: 611 KGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM 664
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 42/190 (22%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
CTA N + + F M R G +P+ T+ +++A+C K+ EA + L+ ++
Sbjct: 214 CTAGNLEMGLXF-------FGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMAL 266
Query: 150 KGFNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSGE--- 190
KG NP + S ++N + ++G VPD TFN+LI C G
Sbjct: 267 KGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQ 326
Query: 191 -LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
L L A++ N +S V+ +I+ +C G + A F +M+
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINS----MC-----------KAGNLNRAMEFLDQMRD 371
Query: 250 KTHPPNRPVY 259
+ PN Y
Sbjct: 372 RGLHPNGRTY 381
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 41/221 (18%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------------MIR 114
L+++ + LI+ A+ + N ++ VL YN++ +R M+
Sbjct: 137 LVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVE 196
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK------ 168
G P+ T+ IL+ +C++G + F E+ G P V + +++ K
Sbjct: 197 SGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGE 256
Query: 169 ----------QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
+G P+L ++N +I +C+ G++ +++ + +SK + + R
Sbjct: 257 AFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI------LEEMSKRRYVPD--R 308
Query: 219 LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ N + +G + ++G F A +EM PN Y
Sbjct: 309 VTFNTLING---YCNVGNFHQALVLHAEMVKNGLSPNVVTY 346
>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rehmannii]
Length = 420
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 123 LECGYPASLYFF----NILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIR 178
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C M +A E E+ KG P
Sbjct: 179 LGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVT 238
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q +PDJ T+N+L+ +CK G+L
Sbjct: 239 FTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMX 298
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE +D AF ++++ +L
Sbjct: 299 XKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL 339
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K+G +D A+E++ + + ++ YN+L H M
Sbjct: 238 TFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEM 297
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E +QE L D + +
Sbjct: 298 XXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 357
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 358 XDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDV 392
>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 67/253 (26%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN------ 103
+T+ LM D +S T+ L + +D+AVE+ + ++ +C + YN
Sbjct: 149 QTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNL 208
Query: 104 ------SLHVCFVRMIRKGF--VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
SL F+ +R F P+ T+TIL++ C++ +REA + L ++GF P
Sbjct: 209 CKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPD 268
Query: 156 V----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199
A ++ N+M ++G PDL T+N+LI + KSG
Sbjct: 269 CFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGR--------- 319
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP------SL-------GQFDDAFCFFSE 246
+ EA +LL + E GH FP SL G+ A E
Sbjct: 320 -------------VSEAKKLLRVMAEKGH--FPDEVTYTSLMNGMCRKGETLAALALLEE 364
Query: 247 MQIKTHPPNRPVY 259
M++K PN Y
Sbjct: 365 MEMKGCSPNTCTY 377
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
+H M+ G PDK T + V + C++ ++ +A E ++ELS K +P + S +V
Sbjct: 147 IHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVK 206
Query: 165 KMIKQGSV-----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAV 207
+ K ++ P+L T+ LI+ +C NT +
Sbjct: 207 NLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTILIDNVC-----------NTKNLREATR 255
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + +E F+ C L K + L + +A ++ M+ K P+ Y
Sbjct: 256 LVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITY 307
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 60/252 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF------ 117
T +++I + G +D A EVF +F C V+ YN+L +C +++G
Sbjct: 180 TFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEI 239
Query: 118 ------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
PD T+T +++ +C SGKM+EA +E+ G P V + +++ K G+
Sbjct: 240 QSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGN 299
Query: 172 VPDLE----------------TFNSLIETICKSGEL-------------GLCADVNTNKI 202
+ + E TF SLI+ C++G++ + V T +
Sbjct: 300 IAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAV 359
Query: 203 SIPAVSKEFMIDEAFRLLC--------------NLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
I A+ KE ++EA L N V DG F G D+ EM+
Sbjct: 360 LINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDG---FCKAGNVDEGNVILKEME 416
Query: 249 IKTHPPNRPVYA 260
K P++ +
Sbjct: 417 EKRCDPDKVTFT 428
>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 35/231 (15%)
Query: 28 DIYAERTLNRLNLTLISELSMWKTIE--LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNA 83
D ER N L + + S WK L + SL++ P T +++++ F K G + A
Sbjct: 179 DETVERGYNSL-IHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEA 237
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRMIRKGFVPDKRTHTILVNA 130
V T + + V+ YNSL F MI KG P+ ++ IL+N
Sbjct: 238 QGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILING 297
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPV--------------RSAKQMVNKMIKQGSVPDLE 176
+C + + EA++ E+ +G P + R A+++ M G++PDL
Sbjct: 298 YCKAEMIDEAKQLFNEMIHQGLTPNIVSYNTHGFCQLGKLREAQELNENMHTNGNLPDLC 357
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
T++ L++ CK G + A +++ + + + ++DEA + EDG
Sbjct: 358 TYSILLDGFCKQGN-HIAARKLFSELFVQGLQR--LLDEALETFRKMEEDG 405
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------RSA 159
++I+ G PD T L+N C GK +A E E ++G+N + + A
Sbjct: 143 LAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDETVERGYNSLIHGLCNCSQWKEA 202
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++N+M +PD+ TFN L++T CK G++
Sbjct: 203 SAILNEMTSLNIMPDIVTFNVLVDTFCKEGKV 234
>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 418
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ +N+L +++
Sbjct: 128 LECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIK 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E+ DKG P
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 39/206 (18%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEF 74
+ A + NI+ H E + RL ++ ++ W ++P +S + ++ +
Sbjct: 132 YPASLYFFNILMHSFVKEGEI-RLAQSVFDAITKWG----LRPSVVS-----FNTLMNGY 181
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDK 121
K G ++ + N A Q V Y+ L +V F M+ KG VP+
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T T L++ C +G++ A E +++ + +P ++ A+ ++++
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL 191
MI +G PD T+ +LI+ CK G+L
Sbjct: 302 MIMKGLKPDKFTYTTLIDGNCKEGDL 327
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
I KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 IMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T + + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E+ D G P
Sbjct: 182 IKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q +PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 77/192 (40%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + +PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQ----------------------MLSQSLLPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L+ C G +++AQ+ + E+S KG P + +A + +MIK+
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE 340
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL ++ T + I K+ +
Sbjct: 341 NIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 217 FRLLCNLVEDGH 228
+LL + DG+
Sbjct: 401 SKLLKEMQRDGY 412
>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 418
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ +N+L +++
Sbjct: 128 LECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIK 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E+ DKG P
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 39/206 (18%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEF 74
+ A + NI+ H E + RL ++ ++ W ++P +S + ++ +
Sbjct: 132 YPASLYFFNILMHSFVKEGEI-RLAQSVFDAITKWG----LRPSVVS-----FNTLMNGY 181
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDK 121
K G ++ + N A Q V Y+ L +V F M+ KG VP+
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T T L++ C +G++ A E +++ + +P ++ A+ ++++
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL 191
MI +G PD T+ +LI+ CK G+L
Sbjct: 302 MIMKGLKPDKFTYTTLIDGNCKEGDL 327
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
I KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 IMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 418
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ +N+L +++
Sbjct: 128 LECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIK 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E+ DKG P
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 39/206 (18%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEF 74
+ A + NI+ H E + RL ++ ++ W ++P +S + ++ +
Sbjct: 132 YPASLYFFNILMHSFVKEGEI-RLAQSVFDAITKWG----LRPSVVS-----FNTLMNGY 181
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDK 121
K G ++ + N A Q V Y+ L +V F M+ KG VP+
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T T L++ C +G++ A E +++ + +P ++ A+ ++++
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL 191
MI +G PD T+ +LI+ CK G+L
Sbjct: 302 MIMKGLKPDKITYTTLIDGNCKEGDL 327
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
I KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 IMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 57/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
+ +++I F G +D A +F + Q V+ Y ++ +C F +M
Sbjct: 205 SYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQM 264
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
I KG PD T+ L++ + S GK +E L+E+S G P
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
R A+ + + MI++G P++ + LI G L GL D + I
Sbjct: 325 REARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIK 250
A +K+ MIDEA + + + G L P LG+ DDA F++M +
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQG--LSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNE 442
Query: 251 THPPNRPVY 259
PN V+
Sbjct: 443 GVAPNIFVF 451
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 62/253 (24%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
M + LM + LS ++I + K +ID A+ +FNK
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNK------------------ 403
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------- 156
M ++G PD + L++A C G++ +A ++ ++G P +
Sbjct: 404 ----MKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLC 459
Query: 157 -----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVN 198
AK+ +M+ QG PD+ FN+++ +C G+ +G V
Sbjct: 460 TVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVI 519
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEM 247
+ I IDEA + L ++ G K + G+ DDA+ F EM
Sbjct: 520 SYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREM 579
Query: 248 QIKTHPPNRPVYA 260
P Y+
Sbjct: 580 LRNGITPGVVTYS 592
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 56/192 (29%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ G PD+ T+ L++ +C +G++ +A +E+ G P V +
Sbjct: 544 MLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRR 603
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------GLCA-----DVNTNKI 202
AK++ MI G ++ +N ++ + K+ + LC+ ++ T I
Sbjct: 604 FSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNI 663
Query: 203 SIPAVSKEFMIDEAFRLLC-------------------NLVEDGHKLFPSLGQFDDAFCF 243
I A+ K ++A L NL+E+G+ L +FDD
Sbjct: 664 MIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGY-----LEEFDD---L 715
Query: 244 FSEMQIKTHPPN 255
FS M+ PN
Sbjct: 716 FSAMEKSGTTPN 727
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 107/274 (39%), Gaps = 42/274 (15%)
Query: 17 AVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQ--TLSLIIEEF 74
A NH+ V R R + T SEL + +++ ++ V P T S++I F
Sbjct: 51 AFNHLLTAV------SRVSGRRSSTTESELVVSLFNRMIRECTIKVTPDPCTYSILIGCF 104
Query: 75 GKHGLIDNAVEVFNKC--TAFNCQQCVL------------LYNSLHVCFVRMIRKGFVPD 120
+ G +++ F + + V+ L ++ + RM G PD
Sbjct: 105 CRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPD 164
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSD---KGFNPPVRSAKQMVNKMIKQGSVPDLET 177
++ L+ +C+ + EA E L ++D + P V S ++N +G V +
Sbjct: 165 VVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVD--KA 222
Query: 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-------- 229
+N +E + + G+ +V T I + K ++D A + +++ G K
Sbjct: 223 YNLFLEMM----DRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNC 278
Query: 230 ---LFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ S+G++ + EM P+ Y
Sbjct: 279 LIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYG 312
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK------- 115
+T +++I G + AVE+ + F C ++ YN+L C ++K
Sbjct: 207 KTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDD 266
Query: 116 -----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
G PD T+T +++ +C +GKM+EA L ++ G P
Sbjct: 267 VKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ +A+++ KMI G PD+ TF SLI+ C+ G++ G+ + T
Sbjct: 327 EMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYS 386
Query: 202 ISIPAVSKEFMIDEAFRLLCNL--------------VEDGHKLFPSLGQFDDAFCFFSEM 247
I I A+ KE + +A LL L V DG F G+ ++A EM
Sbjct: 387 ILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDG---FCKAGKVNEAIVIVEEM 443
Query: 248 QIKTHPPNRPVY 259
+ K P++ +
Sbjct: 444 EKKKCKPDKITF 455
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 31/163 (19%)
Query: 60 LSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK 115
L ++P T +++++ + K G + A E+ K +F C V+ + SL C V + +
Sbjct: 306 LGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQ 365
Query: 116 GF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP--- 154
GF P+ T++IL+NA C ++ +A+E L +L+ K +NP
Sbjct: 366 GFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVID 425
Query: 155 ------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A +V +M K+ PD TF LI C G +
Sbjct: 426 GFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468
>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
Length = 374
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 51/229 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ + + G++D+A+++ + + YN+L R MI G
Sbjct: 149 MIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMG 208
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
VP+ T+T L++ C G M EA+ +E+++KG P V R A+
Sbjct: 209 VVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAE 268
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ +M K+G VPD+ T+ SL+ C +G++ G +V I +
Sbjct: 269 RFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 328
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
+KE + AF+L ++++ G L P DD+ +S + H NR
Sbjct: 329 AKEGRSEAAFQLYDDMLKAG--LIP-----DDS--LYSALVGSLHTDNR 368
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 104/311 (33%), Gaps = 112/311 (36%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------- 112
SV P S++++ K G +D+A + + L YNSL C+VR
Sbjct: 11 SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 70
Query: 113 -----------------------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
+ G P++RT+ +L+N +C G+M A+
Sbjct: 71 ILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEML 130
Query: 144 LQELSDKG-------FNPPVRS-------------------------------------- 158
L ++ +G FN +
Sbjct: 131 LADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCR 190
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
AK +++ MI+ G VP+ T+ +LI CK G++ G V T
Sbjct: 191 VNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVT 250
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH----KLFPSL-------GQFDDAFCFFSEMQ 248
+ I +K+ I EA R + + G + SL G+ D A F EM+
Sbjct: 251 YNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMK 310
Query: 249 IKTHPPNRPVY 259
+ PN Y
Sbjct: 311 QRGTEPNVVAY 321
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDN 82
V DIY TL L ++ L KT+ L + V P T + +I K G +
Sbjct: 174 VELDIYTYNTLA-CGLCRVNRLDEAKTL-LHIMIEMGVVPNYVTYTTLISIHCKDGDMVE 231
Query: 83 AVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVN 129
A +F + V+ YN + + + M +KGFVPD T+ LV+
Sbjct: 232 ARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVH 291
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVP 173
C +GK+ A + +E+ +G P V +A Q+ + M+K G +P
Sbjct: 292 GHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIP 351
Query: 174 DLETFNSLIETI 185
D +++L+ ++
Sbjct: 352 DDSLYSALVGSL 363
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 42/188 (22%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
+ +G+ G + AV+VF + +NC+ + YN++ H ++RM +G
Sbjct: 83 MRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGI 142
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--FNPPVR--------------SAKQ 161
PD T TI + ++C + + A L + +G N V A +
Sbjct: 143 APDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYE 202
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
+ NKM++ G P + TFN L+ +CK G L G+C ++ T I I +
Sbjct: 203 LFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLC 262
Query: 209 KEFMIDEA 216
++ +++ A
Sbjct: 263 RKGVLEGA 270
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 21/116 (18%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KGFVPD+ T+ L+ C G + A +E KG P V
Sbjct: 322 KGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLK 381
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A Q++N M K+G PD+ T+N +I +CK G C + N + A++K ++ D
Sbjct: 382 ALQLMNDMSKEGMSPDIWTYNLVINGLCKMG----CVS-DANNLLNAAIAKGYLPD 432
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 47/212 (22%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKR 122
+ G ID+A+ +F + + ++LYN+L + M ++G PD
Sbjct: 340 QDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIW 399
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKM 166
T+ +++N C G + +A L KG+ P + +A +++ M
Sbjct: 400 TYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSM 459
Query: 167 IKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMI 213
G PD+ T+NS++ +CK+ E G ++ T I I ++ K +
Sbjct: 460 WSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKV 519
Query: 214 DEAFRLLCNLVEDGHKLFP---SLGQFDDAFC 242
EA LL + G L P S G FC
Sbjct: 520 TEALDLLEEIRNRG--LIPDPVSFGTVISGFC 549
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 46/189 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I+ + K +DNA+ + + + V+ YNS+ +C F +
Sbjct: 435 TFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMI 494
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG +P+ T+ IL+ + C + K+ EA + L+E+ ++G +
Sbjct: 495 MEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGL-------------------I 535
Query: 173 PDLETFNSLIETICKSGELG--------------LCADVNTNKISIPAVSKEFMIDEAFR 218
PD +F ++I C +G+L +C V T I I A S++ +D A +
Sbjct: 536 PDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQK 595
Query: 219 LLCNLVEDG 227
L + + G
Sbjct: 596 LFHEMGDKG 604
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 43/219 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKG 116
+I+ + GL+ A+++ N + + YN + +M I KG
Sbjct: 369 LIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKG 428
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------ 164
++PD T L++ +C KM A L + G P V + ++N
Sbjct: 429 YLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVM 488
Query: 165 ---KMI-KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
KMI ++G +P++ T+N LIE++CK+ ++ GL D + I
Sbjct: 489 ETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGF 548
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
+DEA++L + E +++ ++ ++ FSE
Sbjct: 549 CNNGDLDEAYQLFRRM-EQQYRICHTVATYNIMINAFSE 586
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 38/172 (22%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------- 154
N LH +M+ KG PD T+ ++ + GK+++A L++ KGF P
Sbjct: 279 NYLH----KMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSL 334
Query: 155 --------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GL 193
+ A + + + +G P + +N+LI+ + + G + G+
Sbjct: 335 IIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGM 394
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
D+ T + I + K + +A LL + G+ P + F+ D +C
Sbjct: 395 SPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGY--LPDIFTFNTLIDGYC 444
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 38/176 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE-------------------FLQELSD 149
F +M+R G P T L++ C G ++E ++ F+Q L
Sbjct: 204 FNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCR 263
Query: 150 KGF----NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
KG N V A+ ++KM+ +G PD T+N++I K G++ + ++I
Sbjct: 264 KGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQ-----DASRILKD 318
Query: 206 AVSKEFMIDE--AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
A K F+ DE L+ + +D G D A F E K P+ +Y
Sbjct: 319 AKFKGFVPDEFTYCSLIIGVCQD--------GDIDHALALFEEALGKGLKPSIVLY 366
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+ NI+ ++I E +T +L +E ++ L P + +I F +G +
Sbjct: 500 LPNIITYNILIESLCKARKVTEALDL-----LEEIRNRGLIPDPVSFGTVISGFCNNGDL 554
Query: 81 DNAVEVFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTI 126
D A ++F + + V YN + F M KG PD T+ +
Sbjct: 555 DEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRV 614
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++ +C G + +FL + + GF P + + +++N + Q V
Sbjct: 615 MIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRV 660
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 64/230 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + ++ F K G +D A+++F+ +++GFVPD T+
Sbjct: 47 TYNTLLHGFCKVGELDEALKIFDGA----------------------VKRGFVPDVVTYN 84
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------- 172
L+N +C + K+ EAQ LQ + + P V + +VN + K G V
Sbjct: 85 ALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFS 144
Query: 173 PDLETFNSLIETICKS-----------GEL---GLCADVNTNKISIPAVSKEFMIDEAFR 218
P++ T+++LI +C+ G + G +V T I I + KE ++EAF
Sbjct: 145 PNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFE 204
Query: 219 LLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPN 255
L LV+ H L P G+ +DA +M K P+
Sbjct: 205 LFSGLVK--HGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD 252
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 30/181 (16%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSG 135
KHG N + +N + C + + + RMI+ G+ PD T+ L++ +C G
Sbjct: 3 KHGFWPNRI-TYNALLSGLCNGGRM--SDAQALYERMIKAGYSPDVVTYNTLLHGFCKVG 59
Query: 136 KMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFN 179
++ EA + +GF P V + A++++ +M+ + VPD+ T+N
Sbjct: 60 ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYN 119
Query: 180 SLIETICKSGEL----------GLCADVNTNKISIPAVSKEFM-IDEAFRLLCNLVEDGH 228
SL+ +CK+G + G +V T I + +E + EA +L ++++ G+
Sbjct: 120 SLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGY 179
Query: 229 K 229
+
Sbjct: 180 E 180
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 43/194 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +++ G PD T+T+ ++ C +G++ +A L+++ +KG P V S ++N + K
Sbjct: 206 FSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCK 265
Query: 169 Q----------------GSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ G P+ +FN+LI C++G+ G+ V T
Sbjct: 266 EKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVT 325
Query: 200 NKISIPAVSK---EFMIDEAFRLLCNLVEDGH--------KLFPSL---GQFDDAFCFFS 245
I + + K E I EA L ++E G L L G+ DDA
Sbjct: 326 YNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLG 385
Query: 246 EMQIKTHPPNRPVY 259
M+ K PN Y
Sbjct: 386 AMEAKGCIPNVYTY 399
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M + GF P++ T+ L++ C+ G+M +AQ + + G++P V +
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
A ++ + +K+G VPD+ T+N+LI CK+ +L L DV T
Sbjct: 61 LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIK 250
+ + K +DEA R+L +V+ G L L +A F + +
Sbjct: 121 LVNGLCKNGRVDEA-RML--IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQ 177
Query: 251 THPPNRPVY 259
+ P P Y
Sbjct: 178 GYEPEVPTY 186
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 95 CQQC-VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS---GKMREAQEFLQELSDK 150
C QC + F M+++G P T+ ILV+ C + G+++EA + +K
Sbjct: 296 CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK 355
Query: 151 GFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETIC 186
G P V + A++++ M +G +P++ T+NSLI +C
Sbjct: 356 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLC 407
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F MI KG VPD T++ L++ +GK+ +A+ L + KG P V + +++
Sbjct: 349 FDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCG 408
Query: 165 ------------KMIKQGSVPDLETFNSLI 182
M+++G VPD T+ ++I
Sbjct: 409 LEKVDEALELFVAMVEKGCVPDTITYGTII 438
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S +I+ GK G +D+A + A C V YNSL +C FV M
Sbjct: 363 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAM 422
Query: 113 IRKGFVPDKRTHTILVNA 130
+ KG VPD T+ +++A
Sbjct: 423 VEKGCVPDTITYGTIISA 440
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 53/248 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+ + K + ++ + + C+ + YN+L V+ M
Sbjct: 174 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM 233
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+R+ P T ++++ +C G++ A E Q ++D+G P + +
Sbjct: 234 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRI 293
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A+Q++ +M + G PD+ T+NS++ +CK+ ++ G DV T
Sbjct: 294 DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTL 353
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTH 252
I + K +D+A +LL + +G F Q D + FFSEM K
Sbjct: 354 IDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGC 413
Query: 253 PPNRPVYA 260
P Y+
Sbjct: 414 VPTVITYS 421
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 42/194 (21%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
SLI+E+ + G N V +N C N + V+L+N +M+ PD
Sbjct: 122 SLILEDMIEAGCAPNVV-TYNTLINGFCKLGNMDEAVVLFN-------QMLENSCSPDVF 173
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---------- 172
T+ IL++ +C + ++ + LQE+ G P + +++ ++K G
Sbjct: 174 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM 233
Query: 173 ------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMI 213
P TFN +I+ CK G+L G D+ T I I + I
Sbjct: 234 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRI 293
Query: 214 DEAFRLLCNLVEDG 227
D+A +LL + E G
Sbjct: 294 DDARQLLERMTEAG 307
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
R +++ P T+TILV+A C S ++ +A L+++ + G P V + ++N K G
Sbjct: 92 RDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLG 151
Query: 171 SVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-- 227
++ + + FN ++E C DV T I I K+ + +LL +V+ G
Sbjct: 152 NMDEAVVLFNQMLENSCS-------PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 204
Query: 228 ------HKLFPSL---GQFDDAF 241
+ L SL G++ DAF
Sbjct: 205 PNFITYNTLMDSLVKSGKYIDAF 227
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M R G PD +TIL++ +C + ++ ++ F E+ DKG P V + +++K+ K
Sbjct: 373 MERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR 432
Query: 172 VPD 174
V D
Sbjct: 433 VRD 435
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 42/164 (25%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
PD T++ L+N +C +A++F Q A +++++M K+G VP +
Sbjct: 31 PDSITYSTLINGFC------KARDFQQ-------------AYRLLDEMEKRGIVPHNAVY 71
Query: 179 NSLIETICKSGELGL-----------CA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
N++I+ +C +G + CA V T I + A+ K I +A +L +++E
Sbjct: 72 NTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEA 131
Query: 227 GH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G F LG D+A F++M + P+ Y
Sbjct: 132 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTY 175
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 44/211 (20%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------- 105
+FP T + +I K + A+E+F N V++Y++L
Sbjct: 530 GIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKA 589
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------- 154
+ + RM++ G PD +TIL+N C +M EA +++++ G P
Sbjct: 590 LMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAG 649
Query: 155 -----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCAD 196
+R A + N+M+++G +P + T+ SL++ CK + G+ D
Sbjct: 650 FCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPD 709
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + I A + +D+A +L + E+G
Sbjct: 710 VVTYNVLIAAHRRRGNLDKALEMLNEMKENG 740
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 96/253 (37%), Gaps = 62/253 (24%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
S K +E M ++L+ P ++ F K GL NA+E FN
Sbjct: 448 SAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNM----------------- 490
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK- 165
M+ G +P T ++++A C G++ EA + E+ +G P + + ++N+
Sbjct: 491 -----MLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRL 545
Query: 166 ---------------MIKQGSVPDLETFNSLIETICKSG-------------ELGLCADV 197
M+K+ +P + +++LI+ K ++G+ D+
Sbjct: 546 CKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDM 605
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSE 246
I I + + EA+ L + E+G F +G A+ F+E
Sbjct: 606 VAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNE 665
Query: 247 MQIKTHPPNRPVY 259
M + H P Y
Sbjct: 666 MLQRGHLPTVVTY 678
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 23/203 (11%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH--V 107
K +E MK +S T S++I F K G ++ + + + N + ++ Y+SL +
Sbjct: 346 KVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGL 405
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C F + G+ D+ ++IL+ +C G + A + ++E+ P
Sbjct: 406 CKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDP 465
Query: 157 RSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ + +V+ K G V LE FN ++E G+ + T + I A +E ++E
Sbjct: 466 SNFESLVHGFCKMGLWVNALEFFNMMLEG-------GILPSIATCNVIIDAHCREGRVEE 518
Query: 216 AFRLLCNLVEDGHKLFPSLGQFD 238
A L+ + G +FP+L ++
Sbjct: 519 ALNLMNEMQTQG--IFPNLFTYN 539
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 48/200 (24%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV---------- 118
L+I+ F + +++NAV+VF + + N L C R+ F+
Sbjct: 184 LLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKST 243
Query: 119 ---PDKRTHTILVNAWCSSG------KMREAQEFLQELSDKGFNPPV------------- 156
P+ T+TI++N +C R+A E L+E+ G +P V
Sbjct: 244 GPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRV 303
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTN 200
SA V +I + ++ +N++I +CK GEL G+ DV T
Sbjct: 304 GYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTY 363
Query: 201 KISIPAVSKEFMIDEAFRLL 220
I I K+ +++ L+
Sbjct: 364 SILIHGFCKQGDVEKGLYLI 383
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------- 155
+S H M+R PD LV+ +C G A EF + + G P
Sbjct: 447 DSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVI 506
Query: 156 ---------VRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
V A ++N+M QG P+L T+N++I +CK
Sbjct: 507 IDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCK 547
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M+++G +P T+T LV+ +C ++ A + E+ KG P V +
Sbjct: 663 FNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRR 722
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +M+N+M + G +PD T+ ++E + K+ +L
Sbjct: 723 RGNLDKALEMLNEMKENGVLPDHMTY-MMLEWLLKAKKL 760
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 31/155 (20%)
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
+ +++ C G++ EA + L+E+ G +P V + +++ KQG V
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMK 387
Query: 173 -----PDLETFNSLIETICKS-------------GELGLCADVNTNKISIPAVSKEFMID 214
P L +++SL +CK G G D I I + +D
Sbjct: 388 YSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLD 447
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
A +L+ +V + L P F+ F +M +
Sbjct: 448 SAHKLMEEMVRNN--LAPDPSNFESLVHGFCKMGL 480
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 34/228 (14%)
Query: 48 MWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWK I+ M + + V P LS ++ G ++ A+ +F + CQ YNS+
Sbjct: 109 MWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMI 168
Query: 106 ------------HVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M +G PD T++ L++A+C G+ A + L E+ + G
Sbjct: 169 IMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGM 228
Query: 153 NPPVRSAKQMVNKMIK-QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
P + ++ K + L F + C+ DV T I + K
Sbjct: 229 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRP-------DVFTYTELIRGLGKAG 281
Query: 212 MIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQ 248
IDEA+ C + +G + G+ DDA F EM+
Sbjct: 282 RIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEME 329
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 50/216 (23%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
+PD+ VF ++ +I GK G +D+A+++F + C V+ YN++
Sbjct: 299 RPDT--VF---MNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSR 353
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F RM G P T++IL++ +C + +M +A L+E+ +KGF PP +A
Sbjct: 354 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYC 412
Query: 162 MVNKMIKQGSVPDL--ETFNSL---------------IETICKSG-------------EL 191
+ + + DL E F L I+ + K+G +L
Sbjct: 413 SLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL 472
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G DV + +++ M+DEA + + E G
Sbjct: 473 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 508
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
+K + S + +++I+ GK G +D+A+ +F++ C V YN+L
Sbjct: 434 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 493
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
RM G +PD ++ I++N +G A E L + P V S
Sbjct: 494 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 553
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +++ +M G DL T++S++E I K
Sbjct: 554 VLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 595
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 97/254 (38%), Gaps = 56/254 (22%)
Query: 63 FPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------- 112
FP T+ S +I F K G D+A+++ N+ Q +Y L F +
Sbjct: 194 FPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALS 253
Query: 113 ----IRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
+R + PD T+T L+ +G++ EA F E+ +G P M+N +
Sbjct: 254 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLG 313
Query: 168 KQGS----------------VPDLETFNSLIETICKS--------------GELGLCADV 197
K G +P + T+N++I+ + +S E G+
Sbjct: 314 KAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 373
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH--------KLFPSLGQ---FDDAFCFFSE 246
T I I K +++A LL + E G L +LG+ +D A F E
Sbjct: 374 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 433
Query: 247 MQIKTHPPNRPVYA 260
++ + VYA
Sbjct: 434 LKENCGSSSARVYA 447
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W I+LMK ++ + T S+++ + + GL AV FN+ + C ++ ++++
Sbjct: 168 WYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISI 227
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
F ++ F PD +T LV+ WC +G + EA+ +E+ G +P V
Sbjct: 228 LCKKRRAVEAQSFFDNLKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNV 287
Query: 157 RSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSG----------- 189
+ +++ + + G + P+ TFN+LI ++G
Sbjct: 288 YTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQ 347
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
L AD+ T I K+ + EA ++L ++ ++
Sbjct: 348 MKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAKN 386
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 63/246 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNK----------------CTAFNCQQCVLLYNSLHVCF 109
+ + +IE F + G ID AVE+F + C A ++ +L+
Sbjct: 83 SYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLR------ 136
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
RM G+ P R + +V+ C K +EA+E LQE+ +KG P V + ++N K+
Sbjct: 137 -RMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKE 195
Query: 170 GSV----------------PDLETFNSLIETICKSGEL-------------GLCADVNTN 200
G + P++ T+N+L++ C G++ G+ D T
Sbjct: 196 GRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTY 255
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQI 249
+ I + I+ AFRLL + DG + L +L G+ D A F ++
Sbjct: 256 NLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLET 315
Query: 250 KTHPPN 255
+ PN
Sbjct: 316 RGIKPN 321
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 29/167 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+ +ELMK T + +++ F G + A+ + NK + YN L
Sbjct: 203 RVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQ 262
Query: 106 ----HV-CFVRMIR----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
H+ R++R G + D+ T+ L+NA C G+ +A L +G P
Sbjct: 263 CIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNA 322
Query: 157 RSAKQMVN----------------KMIKQGSVPDLETFNSLIETICK 187
+ ++N KM+ G PD T++S IE +CK
Sbjct: 323 VTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 369
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 29/157 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T + +I + K G + +A+ V C+ V YN+L F +M
Sbjct: 184 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM 243
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD T+ +L+ C G + A L+ + G + ++N + K G
Sbjct: 244 RVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 303
Query: 173 ----------------PDLETFNSLIETICKSGELGL 193
P+ TFNSLI +CKSG++ +
Sbjct: 304 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDI 340
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R G+ PD T L+ +C + ++ A++ ++ +GF V S ++ + G
Sbjct: 37 MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGR 96
Query: 172 V------------PDLETFNSLIETICKSG 189
+ PD+ + +L++ +CK+G
Sbjct: 97 IDEAVELFGEMDQPDMHMYAALVKGLCKAG 126
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 25/155 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G PD T+T + A+C G++ EA+ L E+S K G
Sbjct: 418 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMS-------------------KNGV 458
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC--NLVEDGHK 229
D +N+L++ G+ + S+ +V +F R L LVED
Sbjct: 459 TVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLP 518
Query: 230 LFPS----LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
L P+ + D F F M+ PN Y+
Sbjct: 519 LTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 553
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 22/146 (15%)
Query: 47 SMWKTIEL---------MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
+WK IEL MK + T S I+E F + G + A + + +
Sbjct: 523 GVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISL 582
Query: 98 CVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
+Y +L CF + MI+ GF+P ++ L++ G+ +A+E
Sbjct: 583 NEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIF 642
Query: 145 QELSDKGFNPPVRSAKQMVNKMIKQG 170
K ++P K +++ +IK+G
Sbjct: 643 MNSRWKDYSPDEIVWKVIIDGLIKKG 668
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 89/241 (36%), Gaps = 40/241 (16%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
M ++LM + LS ++ + K G+ID A+++FNK V+ Y +L
Sbjct: 358 MHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALID 417
Query: 106 -----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
V F +MI +G P+ LV C+ K A+E + E+ D+G P
Sbjct: 418 ALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICP 477
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN 198
V +++++ M G PD ++ LI C +G V
Sbjct: 478 NAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVF 537
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
+SI E + C S + DDA+C F EM K P
Sbjct: 538 DGMVSIGLSPTEVTYNTLLHGYC-----------SASRIDDAYCLFREMLRKGVTPGVVT 586
Query: 259 Y 259
Y
Sbjct: 587 Y 587
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 44/201 (21%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----- 155
L++ F +MI GF P+ T+ L++ + S GK +E + L+E+S +G P
Sbjct: 249 LFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYG 308
Query: 156 -----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------- 191
R A+ + MI++G P + T+ LI G L
Sbjct: 309 SLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVEN 368
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFD 238
GL D + I A +K MID+A + + + H L P+ LG+ D
Sbjct: 369 GLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQ--HGLSPNVVNYGALIDALCKLGRVD 426
Query: 239 DAFCFFSEMQIKTHPPNRPVY 259
DA F++M + PN V+
Sbjct: 427 DAEVKFNQMINEGVTPNIVVF 447
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 40/192 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F+ MI +G PD T+T +++ C + A+ Q++ D GF P
Sbjct: 222 FLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLS 281
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ QM+ +M +G PD T+ SL+ +CK+G G+ V+T
Sbjct: 282 IGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVST 341
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG----HKLF-------PSLGQFDDAFCFFSEMQ 248
I I + + + E L +VE+G H +F G D A F++M+
Sbjct: 342 YGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR 401
Query: 249 IKTHPPNRPVYA 260
PN Y
Sbjct: 402 QHGLSPNVVNYG 413
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD---KGFNPPVRSAK 160
++ V RM G +PD ++TIL+ C+ + EA E L ++D + P V S
Sbjct: 144 AMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYS 203
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++N +G V + +N +E I + G+ DV T I + K + D A +
Sbjct: 204 IVINGFFTEGQVD--KPYNLFLEMI----DRGIPPDVVTYTTVIDGLCKAQLFDRAEGVF 257
Query: 221 CNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
++++G K + S+G++ + EM + P+ Y
Sbjct: 258 QQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYG 308
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 43/219 (19%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC 108
K + M LS T + ++ + ID+A +F + V+ YN+ LH
Sbjct: 535 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 594
Query: 109 F------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
F + MI G D T+ I++N C S + EA + Q L KG +
Sbjct: 595 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNI 654
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ M+ ++K G D + L A + N + +P V ++ E
Sbjct: 655 ITFTIMIGALLKGGRKED---------------AMDLFAAIPANGL-VPNVVTYRLVAE- 697
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
NL+E+G SL +FD FS M+ PN
Sbjct: 698 -----NLIEEG-----SLEEFDS---LFSAMEKNGTAPN 723
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 40/209 (19%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------VRMIRKGFVPDKRTHTI 126
ID A EV+N + V+ YN++ F ++M + G +P+ T+ +
Sbjct: 171 IDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNV 230
Query: 127 LVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQG 170
LVN SG++ +A+E +QE+ G ++P +R A ++ +M+ +G
Sbjct: 231 LVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRG 290
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+VP L T+N+++ +CK G + + K+ V+K M D + N + G
Sbjct: 291 AVPTLVTYNTIMYGLCKWGRVS-----DARKLLDVMVNKNLMPD---LVSYNTLIYG--- 339
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ LG +AF F+E++ + P+ Y
Sbjct: 340 YTRLGNIGEAFLLFAELRFRGLVPSVVTY 368
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 35/168 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M+ +GF PD T+ + ++ G ++EA E ++++ G P
Sbjct: 461 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGH 520
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA----DVNTNKISIPAVSKEF 211
+R A+ + +M+ +G P + T+ LI + G L L +++ + ++
Sbjct: 521 LRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 580
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+I+ LC + + D A+ FF+EMQ K PN+ Y
Sbjct: 581 LING----LC-----------KVRKMDQAYKFFTEMQAKGISPNKYTY 613
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 46/191 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------- 154
MI+ G PD T TILV +C G + A+E E+ ++G P
Sbjct: 391 MIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGD 450
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
P + A M +M+ +G PDL T+N I+ + K G L GL D T
Sbjct: 451 PSK-AFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYT 509
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQ 248
I A + +A + ++ G +FPS+ G+ A F EM
Sbjct: 510 SIIHAHLMAGHLRKARAVFLEMLSKG--IFPSVVTYTVLIHSYAVRGRLKLAILHFFEMH 567
Query: 249 IKTHPPNRPVY 259
K PN Y
Sbjct: 568 EKGVHPNVITY 578
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 40/237 (16%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
I+ M L V T +I + + G +D A + + + ++ YN++ +
Sbjct: 248 IQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCK 307
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
M+ K +PD ++ L+ + G + EA EL +G P V +
Sbjct: 308 WGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVT 367
Query: 159 ----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
A ++ ++MIK G PD+ TF L+ CK G L + ++ +
Sbjct: 368 YNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEML 427
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + + F + +V + LG AF EM + PP+ Y
Sbjct: 428 N------RGLQPDRFAYITRIVGE-----LKLGDPSKAFGMQEEMLARGFPPDLITY 473
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR--- 111
S +FP T +++I + G + A+ F + V+ YN+L +C VR
Sbjct: 533 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMD 592
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
M KG P+K T+TIL+N C+ G +EA +++ D+ P
Sbjct: 593 QAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQP 643
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F+ M+ KG P T+T+L++++ G+++ A E+ +KG +P V + ++N + K
Sbjct: 528 FLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCK 587
Query: 169 ----------------QGSVPDLETFNSLIETICKSG 189
+G P+ T+ LI C G
Sbjct: 588 VRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLG 624
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 45/225 (20%)
Query: 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
N+ + E W + M V T +LII+ F + G ++ V F K
Sbjct: 236 NMGRVLEAERW--LNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPN 293
Query: 99 VLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREA-QEFL 144
V+ + +L +C M+R+G+ P+ THT L++ C G +A + FL
Sbjct: 294 VINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFL 353
Query: 145 QELSDKGFNPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKS 188
+ + G+ P V + M+N +M +QG VP+ T+ +LI+ CK
Sbjct: 354 KLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKV 413
Query: 189 GEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
G G ++ T I + K+ +DEA+RLL
Sbjct: 414 GNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLL 458
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN---SL 105
++ ++LM + S T + II+ K G +D A + NK + Q + Y S+
Sbjct: 420 YELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSV 479
Query: 106 H----------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
H V F +M++ GF PD ++T L++ +C +M+E++ +E G P
Sbjct: 480 HCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPT 539
Query: 156 VRSAKQMV----------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
++ M+ +M G PD T+ +LI +CK +L
Sbjct: 540 KKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +GF+ D T T++++A+C G + + ++ + G P V + ++N + KQGS
Sbjct: 250 MVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGS 309
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE-DGHKL 230
+ + F L E + + G +V T+ I + K+ ++AFRL LV DG+K
Sbjct: 310 IK--QAFELLEEMVRR----GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYK- 362
Query: 231 FPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
P++ + + +C S MQ + PN Y
Sbjct: 363 -PNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTY 403
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 91 TAFNCQQCVLLYNSLHV-CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
T+ C C SL V F RM G PD T+ L++ C K+ +A+ + D
Sbjct: 544 TSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMD 603
Query: 150 KGFNPPVRSAKQMVNKMIKQG------SVPD-------LETFNSLIETICKSGELGLCA 195
KG +P + + + K+ +V D + T N+L+ +C G+L + A
Sbjct: 604 KGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAA 662
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 35/171 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F RM++ G P+ T++ L+N CS G++ EA + L+E+ DKG P V +
Sbjct: 260 FDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCD 319
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVS 208
A +++ KM K+G P+++T+ +LI + + G+ +G+ + + + AV+
Sbjct: 320 AGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVT 379
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+I++ + VE G+F+ A F M PN Y
Sbjct: 380 YSALINQLY------VE---------GRFETALTIFEWMLSHDSLPNTETY 415
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 32/157 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+ +E+MK + L + T + +I F + G +++A +FN+ V+ YN++
Sbjct: 468 RLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGY 527
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
F +M+ G VP T+ ++++ + + ++ EA+ F
Sbjct: 528 LTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENF------------- 574
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
KM+KQG +P++ T+ S I+ +CK+G L
Sbjct: 575 ------CGKMVKQGLLPNVITYTSFIDGLCKNGRTSL 605
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 30/219 (13%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY----NSLHV---------CFVR 111
QT + +I + G + A+ V++K A + Y N L+V F
Sbjct: 343 QTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEW 402
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +P+ T+ +++ +CS G +++A ++ G +P V + +++ KQG
Sbjct: 403 MLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGY 462
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-- 229
+ N+ + + GL D T I S+ ++ AF L +VE G
Sbjct: 463 M------NNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPN 516
Query: 230 ---------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ ++ + DDA F +M + P+ Y
Sbjct: 517 VVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTY 555
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
R++ G P+ T+T LV C G+ EA + ++ + KG P
Sbjct: 643 RLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNL 702
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
V SA ++ + M+ G P L + +LI +CK+
Sbjct: 703 EVESALKIFDSMVTTGFQPCLSDYKALICALCKA 736
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
++ M+ G P+ T ++ C+ GK++EA+ + + G P +
Sbjct: 190 YIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCK 249
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +M ++M+K G P+ T+++LI +C G L
Sbjct: 250 NGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRL 288
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 35/155 (22%)
Query: 108 CFV----RMIR-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS---DKGFNPPVRS- 158
CFV R++R + FVP +++ + + G+++ + L E++ D G+ S
Sbjct: 113 CFVSMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFST 172
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ + +M+ G P+L TFN++I+ +C G++ G
Sbjct: 173 LLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYG 232
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
C D T I K +D AF + +V+DG
Sbjct: 233 ACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDG 267
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 55/221 (24%)
Query: 41 TLISELSM----WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ 96
TLI+ LS + + +M+ + + QT + II F K G ID A +
Sbjct: 129 TLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQ---- 184
Query: 97 QCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------ 150
R G PD T++IL+N C S +R+A E LQE+ +
Sbjct: 185 -----------------RAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCAS 227
Query: 151 --GFNPPVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------- 191
FN V A+++++ M++ G PD+ T++++I+ +C+ G++
Sbjct: 228 VVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLE 287
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G DV T + + + K + EA RL+ ++EDG
Sbjct: 288 KMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 46/215 (21%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
KPD + T + +I K G +D A +V ++ ++ YN+L R
Sbjct: 86 KPDVV-----TFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRS 140
Query: 116 G----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------- 155
G PD +T+ +++ +C SG++ A FL+E+ + P
Sbjct: 141 GEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200
Query: 156 -------VRSAKQMVNKMI-KQGSVPDLETFNSLIETICKSGEL-------------GLC 194
+R A +++ +MI ++ + FN+L++ CK+ +L G
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCA 260
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
DV T I + + +D+ F LL +V G K
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCK 295
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G P + V+A C SGK+ EA E ++ + D P V + A
Sbjct: 49 GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+Q++++M + G +L T+N+LI + +G G V + P
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTY--------- 159
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
N + G F G+ D A+ F EM+
Sbjct: 160 --NAIIHG---FCKSGEIDRAYGFLEEMK 183
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+++ + K +D A E+ + C V+ Y+++ +C +M+ +G
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
PD T+T+LV C +GKM EA ++V +M++ G P+
Sbjct: 294 CKPDVVTYTVLVTGLCKAGKMVEAC-------------------RLVKRMLEDGCTPNAV 334
Query: 177 TFNSLIETICKSGELGLCADVNTN 200
T++ + + +CK +L + D+ T+
Sbjct: 335 TYSLVFDGLCKIDKLDMANDLLTS 358
>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 418
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G D T+++L+N C + KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+ +M+ + PD T+ L+ C G +++AQ+ + E+S KG P
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNT 199
+ +A + +MIK+ D + +LI +C+ G +GL ++ T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I ++ + +LL + DG+
Sbjct: 384 YTMIINEFCEKGDVWTGLKLLKEMQRDGY 412
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 49/239 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HVCFVRMIRK-G 116
+ + +IE F + G ID A+E+F + T + L L +C ++ +++ G
Sbjct: 201 SYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELG 260
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
+ P R + LV+ WC K EA++ L E+ D G P V + +VN ++G +
Sbjct: 261 WRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAV 320
Query: 173 ------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAV 207
P++ T+N++++ C +G E G+ DV T + I
Sbjct: 321 RVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQ 380
Query: 208 SKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPN 255
+ I AFRLL + +G + L +L G+ D+A F ++ + PN
Sbjct: 381 CIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPN 439
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 40/238 (16%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S ++ + LM+ + L+ T +++I+ K G +D A +F+ + + +N++
Sbjct: 388 SAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVI 447
Query: 106 -HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+C MI G+ PD T++ + C + +E F+ E+ K
Sbjct: 448 NGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVK 507
Query: 154 PPVRSAKQMVNK----------------MIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P + ++N+ M+ QG PD+ T+ + + C G L +V
Sbjct: 508 PSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENV 567
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
T + K I +A + N + DGH S+GQ D A M PN
Sbjct: 568 VTE------MKKCRTIVDA--MAYNTLIDGHT---SIGQTDRAVTILKHMTGVASMPN 614
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 29/152 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV-CFVRMIR-- 114
T + I++ F G + A+ + ++ + V+ YN L H+ R++R
Sbjct: 337 TYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLM 396
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G D+ T+ +L++A C +GK+ EA L +G P + ++N
Sbjct: 397 EGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKF 456
Query: 165 --------KMIKQGSVPDLETFNSLIETICKS 188
MI G PD T++ IE +CK+
Sbjct: 457 DVACTFLENMISAGYAPDTYTYSPFIENLCKT 488
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 29/195 (14%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T ++++ + + G + AV VF C+ V YN++ F +M
Sbjct: 302 TCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQM 361
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD T+ +L+ C G + A L+ + G + +++ + K G V
Sbjct: 362 RECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKV 421
Query: 173 ----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
P+ TFN++I +CK+G+ + N IS +
Sbjct: 422 DEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPF 481
Query: 217 FRLLCNLVEDGHKLF 231
LC LF
Sbjct: 482 IENLCKTKGSQEGLF 496
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R G+ PD T L+ +C + ++ A + ++ +GF+ S ++ + G
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGR 214
Query: 172 V------------PDLETFNSLIETICKS--GELGLC 194
+ PD+ T +L++ +C + GE GLC
Sbjct: 215 IDEALELFREMTQPDMYTHAALVKGLCDAGRGEEGLC 251
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 47 SMWKTIEL---------MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
S+WKTIEL MK +S+ +T I+E F + +D + + N
Sbjct: 640 SVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPL 699
Query: 98 CVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
+YN+L CF + MI GF+P+ + L++ + G+ A+E
Sbjct: 700 NEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIF 759
Query: 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI-CKSGE 190
+ K +N K +++ I++G S++E + CK +
Sbjct: 760 RSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSD 806
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 33/198 (16%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDN 82
N++ H++ + + L S L ++K +E VF T S I++ K G +D+
Sbjct: 911 NVILHNVVIKGLCSARKLD--SALELFKEMEESGSCPPDVF--TYSTIVDSLVKSGKVDD 966
Query: 83 AVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVN 129
A + + C V+ Y+SL +C RM R G P+ T+ +++
Sbjct: 967 ACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIID 1026
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVP 173
C G++ EA L+E+ D G P V A +V M+++G VP
Sbjct: 1027 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVP 1086
Query: 174 DLETFNSLIETICKSGEL 191
+L T+NSL++ CK E+
Sbjct: 1087 NLFTYNSLLDMFCKKDEV 1104
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 106/284 (37%), Gaps = 92/284 (32%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++ F + G +D AVE+ K T + + YN++ F R M
Sbjct: 337 TYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMM 396
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR--------------- 157
I+ G PD ++ +++ +C +GK+REA + L+++ +G P V
Sbjct: 397 IQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAI 456
Query: 158 ------------------------------------SAKQMVNKMIKQGSVPDLETFNSL 181
A+ ++ M+K PD+ T+NS+
Sbjct: 457 DSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSV 516
Query: 182 IETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
++ +CKS + G+ DV T I I + K+ +D AF++L + E
Sbjct: 517 VDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKE--A 574
Query: 229 KLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
K P + G D AF F EM PN Y
Sbjct: 575 KCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTY 618
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 41/189 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------VRSA 159
M R G + H +++ CS+ K+ A E +E+ + G PP V+S
Sbjct: 903 MPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSG 962
Query: 160 K-----QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
K ++V M+ +G P++ T++SL+ +CK+G+L G ++ T
Sbjct: 963 KVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYN 1022
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIK 250
I K IDEA+ LL +V+ G + F G+ +DA M K
Sbjct: 1023 TIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK 1082
Query: 251 THPPNRPVY 259
+ PN Y
Sbjct: 1083 GYVPNLFTY 1091
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + II+ K G ID A + + CQ V+ Y L F + M
Sbjct: 1020 TYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 1079
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--------- 163
+ KG+VP+ T+ L++ +C ++ A + L + KG P V S ++
Sbjct: 1080 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 1139
Query: 164 -------NKMIKQGSVPDLETFNSLIETICKS 188
+M+ VPD+ TFN++I+ +CK+
Sbjct: 1140 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKT 1171
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 42/193 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVCFV--RMIRKG 116
++ F K ++NA+ + + C V+ Y ++ C V +MI++G
Sbjct: 271 VLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG 330
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAK 160
P+ T+ LV+ +C G + A E +++++++G+ P + A
Sbjct: 331 CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAH 390
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
Q++ MI+ G PD ++++I CK+G+L G DV I A+
Sbjct: 391 QVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDAL 450
Query: 208 SKEFMIDEAFRLL 220
K ID A LL
Sbjct: 451 CKAAAIDSAQELL 463
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M++ GF P T+ L++ +C +G + +A E LQ L KG P V
Sbjct: 1290 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 1349
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
R A +++ M++ G VPD T+N+L++ C +
Sbjct: 1350 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDA 1382
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S +K +E MK T S +I K G +D A +VF + C ++ YN+L
Sbjct: 563 SAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI 622
Query: 106 -HVCFVR-----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+C + M ++ PD T+T L+N C++ ++ EA L+E+ DK
Sbjct: 623 DGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDK--- 679
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
G +PD T+ +L+ + K+ L L
Sbjct: 680 ----------------GCLPDRMTYGTLLRALQKTNNLEL 703
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 45/206 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T + II+ K +D A E+FN C ++ YNSL +C R M
Sbjct: 1160 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 1219
Query: 113 IRK-GFVPDKRTHTILVNAWCSSGKMREAQE-FLQELSDKGFNPP--------------- 155
RK G PD T+ +++ C S ++ A + FLQ LSD G P
Sbjct: 1220 TRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD-GLAPDDVTYSIVISSLCKWR 1278
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A ++ M+K G P T+ +LI+ CK+G L G DV T
Sbjct: 1279 FMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFS 1338
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I +SK + +A LL ++ G
Sbjct: 1339 IFIDWLSKRGRLRQAGELLETMLRAG 1364
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++++ F K G ++A+ + + YNSL F + M
Sbjct: 1055 TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM 1114
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
I+KG VP+ ++ ++ C + K+ E L+++ P + + +++ M K
Sbjct: 1115 IQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRV 1174
Query: 169 ------------QGSVPDLETFNSLIETICKSGEL--------------GLCADVNTNKI 202
G P+L T+NSL+ +CKS G D+ T
Sbjct: 1175 DIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNT 1234
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I + K +D A++L ++ DG
Sbjct: 1235 VIDGLCKSKRVDRAYKLFLQMLSDG 1259
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F++M+ G PD T++I++++ C M EA L+ + GF+P
Sbjct: 1252 FLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCK 1311
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+ A +++ ++ +GS PD+ TF+ I+ + K G L ++ + V
Sbjct: 1312 TGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVT 1371
Query: 213 IDEAFRLLCN--LVEDGHKLFPSLGQ 236
+ + C+ L ED LF + Q
Sbjct: 1372 YNTLLKGFCDASLTEDAVDLFEVMRQ 1397
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 89/241 (36%), Gaps = 77/241 (31%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNK--------------------CTAFNCQQCVLLYNSL 105
T S +I F + G I A E+F++ C A C VL +
Sbjct: 163 TYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF--- 219
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------- 158
R + K PD T+ ++N S ++ +A L+E+ D GF P V S
Sbjct: 220 -----REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHG 274
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
A ++ +M+ +G PD+ ++ ++I +CK +
Sbjct: 275 FCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQ------------------- 315
Query: 210 EFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
+DEA R++ +++ G + F +G D A +M + + PN
Sbjct: 316 ---VDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAIT 372
Query: 259 Y 259
Y
Sbjct: 373 Y 373
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 41/181 (22%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F RM G +PD T++I+++++C + A + L+ + + P V + +
Sbjct: 527 NDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSAL 586
Query: 163 VNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPA 206
+N + K G+V P+L T+N+LI+ +CK NK+ A
Sbjct: 587 INGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCK-----------INKVEQAA 635
Query: 207 VSKEFMIDEA-------FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E M ++ + L N + + +L ++A+ EM+ K P+R Y
Sbjct: 636 EMLEIMRKQSCTPDSITYTCLINGLCNASRL-------EEAWRVLREMKDKGCLPDRMTY 688
Query: 260 A 260
Sbjct: 689 G 689
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 42 LISELSMWK-------TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94
+IS L W+ +ELM + T +I+ F K G +D A+E+ +
Sbjct: 1270 VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 1329
Query: 95 CQQCVLLYNSLHVCFVR--------------MIRKGFVPDKRTHTILVNAWCSSGKMREA 140
V+ + S+ + ++ M+R G VPD T+ L+ +C + +A
Sbjct: 1330 SYPDVVTF-SIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDA 1388
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL--ETFNSLIET 184
+ + + G P + +V ++ + S DL E S+++T
Sbjct: 1389 VDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDT 1434
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 18/169 (10%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
Y+ H F I + D T++ L++ + +GK+ A E E++ KG K
Sbjct: 142 YSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKS 201
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++ + G D + C D T I +SK +D+A RLL
Sbjct: 202 ILRGLCDAGQCSDAVLHFREMSKTCPP-------DSVTYNTMINGLSKSDRLDDAIRLLE 254
Query: 222 NLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+V++G F + ++A +M + PP+ Y
Sbjct: 255 EMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSY 303
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 33/175 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ +N+L +++
Sbjct: 128 LECGYPASLYFF----NILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIK 183
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C KM +A E+ DKG P
Sbjct: 184 LGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVT 243
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q PDL T+N+LI +CK G+L D+
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 39/206 (18%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEF 74
+ A + NI+ H E + RL ++ ++ W ++P +S + ++ +
Sbjct: 132 YPASLYFFNILMHGFVKEGEI-RLAQSVFDAITKWG----LRPSVVS-----FNTLMNGY 181
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDK 121
K G ++ + N A Q V Y+ L +V F M+ KG VP+
Sbjct: 182 IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNG 241
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T T L++ C +G++ A E +++ + +P ++ A+ ++++
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL 191
MI +G PD T+ +LI+ CK G+L
Sbjct: 302 MIMKGLKPDKITYTTLIDGNCKEGDL 327
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
I KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 IMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
Length = 540
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 30/155 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------H------VCFVRM 112
+ + +I G ID A E+F + ++ QCV+ Y ++ H CF RM
Sbjct: 75 SYTTLIMGLADSGRIDVACELFEEMSSSG-SQCVVAYTAIINALFKAHRPDQAIACFERM 133
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ + PD RT T+++ C +GK+ A E QE++ KG+ P +
Sbjct: 134 VARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMM 193
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++++ +++ +G P T+ S I +CK+G +
Sbjct: 194 DEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRV 228
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 30/149 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------P 155
F M+R+G VPD RT+ ++V+ +C GKM+ A + ++ + G
Sbjct: 302 FEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLG 361
Query: 156 VRSAKQMVN---KMIKQGSVPDLETFNSLIETICKSGEL--------------GLCADVN 198
V A++ +N M+++ P + T+N L+ +CK G+ G+ +
Sbjct: 362 VNRAREAINVYSTMLRKMVKPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIV 421
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ + I + K DEA + +V++G
Sbjct: 422 SYRTLIHGLGKAGRADEAIDVFTEMVDNG 450
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 61/188 (32%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T +++I K G ++ A EVF + + +++Y SL
Sbjct: 143 RTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQE 202
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD---------------------- 149
++ +G P + T+T ++ C +G++ EA + ++E+
Sbjct: 203 IVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKMCAAEVLHCIFGGYVLEGKIEE 262
Query: 150 ----------KGFNPPVR----------------SAKQMVNKMIKQGSVPDLETFNSLIE 183
KG VR A++M M++QG VPD T+ ++
Sbjct: 263 ALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMIVS 322
Query: 184 TICKSGEL 191
CK G++
Sbjct: 323 HFCKQGKM 330
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------R 111
+T +I+ F K G + A +V A + +YNSL F+
Sbjct: 315 RTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGVNRAREAINVYST 374
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK-GFNPPVRSAKQMVNKMIKQG 170
M+RK P T+ IL+ C G+ +A+ L+E+ ++ G P + S + +++ + K G
Sbjct: 375 MLRKMVKPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAG 434
Query: 171 SVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+ ++ F +++ G+ D + I A++ +DEA +LL ++
Sbjct: 435 RADEAIDVFTEMVDN-------GVVPDCPSCTSLIQALAMADRMDEATQLLRDM------ 481
Query: 230 LFPSLGQFDDAFCF 243
P +G DA +
Sbjct: 482 --PRMGITPDALAY 493
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
R G VP ++ L++ +G+ EA + E+ D G P S
Sbjct: 413 RDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMD 472
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A Q++ M + G PD +N+L++ +C ++G DV
Sbjct: 473 EATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGPAWDV 512
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN--------------- 164
D ++T L+ SG++ A E +E+S G + V + ++N
Sbjct: 72 DVVSYTTLIMGLADSGRIDVACELFEEMSSSG-SQCVVAYTAIINALFKAHRPDQAIACF 130
Query: 165 -KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKE 210
+M+ + PDL TF +I +CK+G+L G D+ + +SK
Sbjct: 131 ERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKA 190
Query: 211 FMIDEAFRLLCNLVEDGHK 229
M+DEA +LL +V G K
Sbjct: 191 SMMDEARKLLQEIVSRGMK 209
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 55/221 (24%)
Query: 41 TLISELSM----WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ 96
TLI+ LS + + +M+ + + QT + II F K G ID A +
Sbjct: 129 TLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQ---- 184
Query: 97 QCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------ 150
R G PD T++IL+N C S +R+A E LQE+ +
Sbjct: 185 -----------------RAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCAS 227
Query: 151 --GFNPPVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------- 191
FN V A+++++ M++ G PD+ T++++I+ +C+ G++
Sbjct: 228 VVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLE 287
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G DV T + + + K + EA RL+ ++EDG
Sbjct: 288 KMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 46/215 (21%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
KPD + T + +I K G +D A +V ++ ++ YN+L R
Sbjct: 86 KPDVV-----TFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRS 140
Query: 116 G----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------- 155
G PD +T+ +++ +C SG++ A FL+E+ + P
Sbjct: 141 GEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200
Query: 156 -------VRSAKQMVNKMI-KQGSVPDLETFNSLIETICKSGEL-------------GLC 194
+R A +++ +MI ++ + FN+L++ CK+ +L G
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCA 260
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
DV T I + + +D+ F LL +V G K
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCK 295
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 30/149 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G P + V+A C SGK+ EA E ++ + D P V + A
Sbjct: 49 GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+Q++++M + G +L T+N+LI + +G G V + P
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTY--------- 159
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
N + G F G+ D A+ F EM+
Sbjct: 160 --NAIIHG---FCKSGEIDRAYGFLEEMK 183
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+++ + K +D A E+ + C V+ Y+++ +C +M+ +G
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
PD T+T+LV C +GKM EA ++V +M++ G P+
Sbjct: 294 CKPDVVTYTVLVTGLCKAGKMVEAC-------------------RLVKRMLEDGCTPNAV 334
Query: 177 TFNSLIETICKSGELGLCADVNTN 200
T++ + + +CK +L + D+ T+
Sbjct: 335 TYSLVFDGLCKIDKLDMANDLLTS 358
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 22/187 (11%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
KPD +S + ++ G G +D A +VF++ + C + YN+L
Sbjct: 282 KPDVVSY-----TTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNV 336
Query: 106 ---HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
F MIRKG++P+ T+T+L+ C +GK+ A + L ++ +G P V++ +
Sbjct: 337 EDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVL 396
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM-IDEAFRLLC 221
+ + ++G D+E L ET+ K E D IS V K + A R++
Sbjct: 397 IGYLFEEG---DIEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVV 453
Query: 222 NLVEDGH 228
+V+ G+
Sbjct: 454 EMVDRGY 460
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN-----PPVRS------- 158
+M+ G P K T+ I++ + SG+++ A +F ++ +G N P V S
Sbjct: 235 QMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHG 294
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCAD 196
A+++ ++M ++G P + T+N+LI+ CK G + G +
Sbjct: 295 LGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPN 354
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + I + ID A +LL + +G
Sbjct: 355 VVTYTVLIRGLCHAGKIDRAMKLLDKMKREG 385
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HVCFVR 111
M+ L +T + +I+ F + GL++ A + N+ T V+ YN+ H R
Sbjct: 380 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 439
Query: 112 M----------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M + KG PD +++ +++ +C G++ A + QE+ +KG +P +
Sbjct: 440 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 499
Query: 162 MV----------------NKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
++ +M+ G PD T+ +LI C G+L G
Sbjct: 500 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 559
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
D T + I ++K+ EA RLL L+
Sbjct: 560 FLPDAVTYSVLINGLNKQARTREAKRLLFKLI 591
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 35/172 (20%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
CF M R G +P+ T+ L++A+C G++ EA L+ +S KG P + S ++N +
Sbjct: 236 CFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLC 295
Query: 168 KQGSV----------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAV 207
++GS+ PD T+N+L+ CK G L + A++ N +S V
Sbjct: 296 REGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVV 355
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ +I+ +C + A FF +M+I+ PN Y
Sbjct: 356 TYTALINS----MCKAR-----------NLNRAMEFFDQMRIRGLRPNERTY 392
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 49/208 (23%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR- 111
+ PD +S S II F + G +D A ++ + + Y+SL +C +R
Sbjct: 455 LAPDVVSY-----STIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRR 509
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
M+ G PD+ T+T L+NA+C G + +A E+ KGF P
Sbjct: 510 LTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSV 569
Query: 156 ----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
R AK+++ K+I + SVP T+++LIE C+++ S+
Sbjct: 570 LINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIEN---------CSNIEFK--SVV 618
Query: 206 AVSKEF----MIDEAFRLLCNLVEDGHK 229
A+ K F ++ EA R+ ++VE HK
Sbjct: 619 ALIKGFCMKGLMHEADRVFESMVERNHK 646
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 32/187 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
I+EE G G + V +N C++ ++ V M+R G P T+T L+N
Sbjct: 306 ILEEMGYKGFTPDEV-TYNTLLNGYCKEGN--FHQALVIHAEMVRNGVSPSVVTYTALIN 362
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
+ C + + A EF ++ +G P R+ A +++N+M + G P
Sbjct: 363 SMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 422
Query: 174 DLETFNSLIETIC-------------KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ T+N+ I C + E GL DV + I ++ +D AF++
Sbjct: 423 SVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 482
Query: 221 CNLVEDG 227
+VE G
Sbjct: 483 QEMVEKG 489
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 45/225 (20%)
Query: 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
N+ + E W + M V T +LII+ F + G ++ V F K
Sbjct: 236 NMGRVLEAEKW--LNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPN 293
Query: 99 VLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREA-QEFL 144
V+ + +L +C M+R+G+ P+ THT L++ C G +A + FL
Sbjct: 294 VINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFL 353
Query: 145 QELSDKGFNPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKS 188
+ + G+ P V + M+N +M +QG VP+ T+ +LI+ CK
Sbjct: 354 KLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKV 413
Query: 189 GEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
G G ++ T I + K+ +DEA+RLL
Sbjct: 414 GNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLL 458
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN---SL 105
++ ++LM + S T + II+ K G +D A + NK + Q + Y S+
Sbjct: 420 YELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSV 479
Query: 106 H----------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
H V F +M++ GF PD ++T L++ +C +M+E++ +E G P
Sbjct: 480 HCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPT 539
Query: 156 VRSAKQMV----------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
++ M+ +M G PD T+ +LI +CK +L
Sbjct: 540 KKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 22/162 (13%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +GF+ D T T++++A+C G + + ++ + G P V + ++N + KQGS
Sbjct: 250 MVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGS 309
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE-DGHKL 230
+ + F L E + + G +V T+ I + K+ ++AFRL LV DG+K
Sbjct: 310 IK--QAFELLEEMVRR----GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYK- 362
Query: 231 FPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
P++ + + +C S MQ + PN Y
Sbjct: 363 -PNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTY 403
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 91 TAFNCQQCVLLYNSLHV-CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
T+ C C SL V F RM G PD T+ L++ C K+ +A+ + D
Sbjct: 544 TSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMD 603
Query: 150 KGFNPPVRSAKQMVNKMIKQG------SVPD-------LETFNSLIETICKSGELGLCA 195
KG +P + + + K+ +V D + T N+L+ +C G+L + A
Sbjct: 604 KGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAA 662
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 42/215 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
M + L + P SL+I K G VF K C+ V +Y +L
Sbjct: 263 MDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGN 322
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ---------------E 146
+ F RM ++G PD T+ ++VN C SG++ EA E+L+
Sbjct: 323 MGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSS 382
Query: 147 LSDK-GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
L D G V A+++ +M+K+G PD +N+LI+ + K G+ G
Sbjct: 383 LIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEG 442
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T I I + +E +EA ++ +++ G
Sbjct: 443 CDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKG 477
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 39/186 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E + + ++V S +I+ GK G + A ++F +
Sbjct: 365 LEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEE---------------------- 402
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
M++KG PD + L++A GK EA F + + D+G + V + M+N
Sbjct: 403 MVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHK 462
Query: 166 ----------MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
MI +G P F +L +C SG++ + ++++ V E ++
Sbjct: 463 NEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKL-LDELAPMGVIPETAFED 521
Query: 216 AFRLLC 221
+LC
Sbjct: 522 MLNVLC 527
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ K G D A+ F + C Q V Y + R MI KG
Sbjct: 418 LIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKG 477
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
P L C SGK+ A + L EL+ G P + + M+N + K G + +
Sbjct: 478 ITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPET-AFEDMLNVLCKAGRIKE 534
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 68/244 (27%)
Query: 61 SVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118
+V P T++ ++++ K G+I A QCV F MI KG
Sbjct: 182 NVMPDTVTFNILVDGLSKEGMILEA-------------QCV---------FETMIEKGVE 219
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
P+ T+ L++ +CS +M EAQ+ + KG P VRS AK +
Sbjct: 220 PNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGL 279
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSK 209
+ +M + PD T+++L++ C+ G GL D+ T I + + K
Sbjct: 280 LAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCK 339
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNR 256
+ +DEAF LL + E K+ P++ G+ + A FS + +K P+
Sbjct: 340 QGHLDEAFELLKAMQES--KIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDV 397
Query: 257 PVYA 260
Y
Sbjct: 398 VTYT 401
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M++ G+ PD T++ ++N C G A + L+++ +KG P V
Sbjct: 70 FDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCK 129
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNT 199
A + +++M+ +G P++ T++S++ C G E + D T
Sbjct: 130 DKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVT 189
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEM 247
I + +SKE MI EA + ++E G + P++ ++ D +C S+M
Sbjct: 190 FNILVDGLSKEGMILEAQCVFETMIEKGVE--PNVNTYNALMDGYCSQSQM 238
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 44/191 (23%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K +E M+ L T S++++ K G +D A E+
Sbjct: 313 KLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKA-------------------- 352
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK- 168
M P+ +TIL+ C+ GK+ A+E L KG P V + M++ ++K
Sbjct: 353 --MQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKG 410
Query: 169 ---------------QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
G +P+ T+N +I+ ++G+ N ++ V + F
Sbjct: 411 GLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTS-----NAGRLIEEMVGRGFSA 465
Query: 214 DEA-FRLLCNL 223
D + F++L +L
Sbjct: 466 DSSTFQMLSDL 476
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 44/184 (23%)
Query: 119 PDKRTHTILVNAWCSSGK--MREAQEFLQELSDKGFNP----------------PVRSAK 160
PD T TIL+N +C S A L + G P + A
Sbjct: 8 PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAV 207
++ ++M+K G PD+ T++++I +CK G E G +V I ++
Sbjct: 68 KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127
Query: 208 SKEFMIDEAFRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
K+ +I EA L +V G H F +LG+ ++A F +M + P+
Sbjct: 128 CKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG-FCNLGRSNEATSLFKQMVERNVMPD 186
Query: 256 RPVY 259
+
Sbjct: 187 TVTF 190
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 34/205 (16%)
Query: 73 EFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
E +HGL + + + + C A N + + + + V +G P++RT+T LV
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV-------RGLCPNERTYTTLV 387
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+ + G M EA L+E++D GF+P V + ++N G + D I +
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED------AIAVLEDM 441
Query: 189 GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSLGQFDDAFC-- 242
E GL DV + + + + +DEA R+ +VE G K + SL Q FC
Sbjct: 442 KEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ---GFCEQ 498
Query: 243 --------FFSEMQIKTHPPNRPVY 259
+ EM PP+ Y
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTY 523
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E MK LS + S ++ F + +D A+ V + + + Y+SL
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 106 -----HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
C + M+R G PD+ T+T L+NA+C G + +A + E+ +KG P V
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557
Query: 157 --------------RSAKQMVNKMIKQGSVPDLETFNSLIE 183
R AK+++ K+ + SVP T+++LIE
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 79/229 (34%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F +M KG +P+ T+ L++ +C K+ + + L+ ++ KG P + S ++N
Sbjct: 228 FDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCR 287
Query: 165 -----------------------------------------------KMIKQGSVPDLET 177
+M++ G P + T
Sbjct: 288 EGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVIT 347
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ SLI ++CK+G + GLC + T + S++ ++EA+R+L +
Sbjct: 348 YTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMN 407
Query: 225 EDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
++G PS+ G+ +DA +M+ K P+ Y+
Sbjct: 408 DNGFS--PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ K PD + I+++ C +G +R+A +E+ GF + +V + K
Sbjct: 628 FESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHK 687
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+G V +L NS+I + +S EL ++ K+ + +E +D +L + +DG
Sbjct: 688 EGKVNEL---NSVIVHVLRSCEL---SEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 40/180 (22%)
Query: 22 ANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLID 81
A I+ D+ A +TL+ +L+ + S+ +T +L S SVF L+++ + + LID
Sbjct: 99 AQILAEDV-AAKTLDDEYASLVFK-SLQETYDLCYSTS-SVF----DLVVKSYSRLSLID 151
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------------MIRKGFVPDKRTHTIL 127
A+ + + A VL YN++ +R M+ P+ T+ IL
Sbjct: 152 KALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNIL 211
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ +C +G + A + +KM +G +P++ T+N+LI+ CK
Sbjct: 212 IRGFCFAGN-------------------IDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 543
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 96/240 (40%), Gaps = 77/240 (32%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVR 111
QT ++I F K G+I A +F+ + V+ YNS+ H F
Sbjct: 237 QTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDL 296
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MIRKG +P+ T+ L++ WC + M +A FL E+ + G +P V +
Sbjct: 297 MIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGK 356
Query: 159 ---AKQMVNKMIKQGSVPDLET-----------------------------------FNS 180
AK++ M K G +PDL+T ++
Sbjct: 357 PVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSI 416
Query: 181 LIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
++ +C SG+L G+ DV T I I + KE ++D+A LL + E+G
Sbjct: 417 ILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENG 476
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIR 114
S +++ K G++ A+++F++ T Q + YN L +C M+R
Sbjct: 170 SAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMR 229
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RS 158
KG +PD +T ++ + +G + A+ + G V +
Sbjct: 230 KGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKD 289
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A ++ + MI++G +P++ T+NSLI C++
Sbjct: 290 AMEVFDLMIRKGCLPNIVTYNSLIHGWCET 319
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
D ++I++N CSSGK+ +A E LS KG V + M+N + K+G + D E
Sbjct: 410 DIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAE--- 466
Query: 180 SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ + K E G D T + + + + + I ++ + L
Sbjct: 467 ---DLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYL 504
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG- 170
M + G P T T +VN C G + +A F+ L D G+ + ++N + K G
Sbjct: 87 MFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGH 146
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
S L + E C DV + + K+ M+ EA L + G
Sbjct: 147 SSAALSYLKKMEEQNCN-------LDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKG 196
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M KG P+ T+ L++ C+ + +EA L + KG P V++ + + +K
Sbjct: 189 FSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLK 248
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPA 206
G + ++ S + G +G+ +V T I A
Sbjct: 249 TGMISRAKSIFSFM------GHMGIEHNVVTYNSIIGA 280
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F+ M KG PD T++ ++N +CSSGK EAQ LQE+ + +P V
Sbjct: 175 FIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVK 234
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
SA+ ++ +MI G P++ T N+L++ +C SG+L
Sbjct: 235 EGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKL 273
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 49/159 (30%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV--- 172
G PD +T+ IL++ + GK EA+E +E+ +G P + M+N + KQ +
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357
Query: 173 -------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
P++ TFN+LI CK+G M+D+ L
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAG----------------------MVDDGLEL 395
Query: 220 LCNLVEDG-----------HKLFPSLGQFDDAFCFFSEM 247
C + G + F +G + + F EM
Sbjct: 396 FCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ M +G VPD T++ ++N C ++ EA + + K F+P + + ++ K
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G V D +E C+ G G+ A+ T I K I+ + + ++ G
Sbjct: 386 AGMVDD------GLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG 438
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 56/149 (37%), Gaps = 33/149 (22%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS------- 171
PD ++ +++ G+ +AQ E+ DKG P + + M+N G
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209
Query: 172 ---------VPDLETFNSLIETICKSGELGLCADVNTNKIS---IPAVSKEFMIDEAFRL 219
PD+ TF+ LI + K G+L D+ IS P V +
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNV-----------V 258
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
CN + DG G+ DA F MQ
Sbjct: 259 TCNTLLDG---LCDSGKLKDALEMFKAMQ 284
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 73/203 (35%), Gaps = 57/203 (28%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M+ + PD T + L+NA G + AQ+ LQE+ G P V + +++ + G
Sbjct: 212 EMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSG 271
Query: 171 SV---------------------------PDLETFNSLIETICKSGEL------------ 191
+ PD++T+N LI + G+
Sbjct: 272 KLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 331
Query: 192 -GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF-PSL-------------GQ 236
G+ D T I + K+ +DEA ++ ++ G K F P++ G
Sbjct: 332 RGIVPDTVTYSSMINGLCKQSRLDEATQMFDSM---GSKSFSPNIVTFNTLITGYCKAGM 388
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
DD F EM + N Y
Sbjct: 389 VDDGLELFCEMGRRGIVANAITY 411
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F+ M KG PD T++ ++N +CSSGK EAQ LQE+ + +P V
Sbjct: 175 FIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVK 234
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
SA+ ++ +MI G P++ T N+L++ +C SG+L
Sbjct: 235 EGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKL 273
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 49/159 (30%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV--- 172
G PD +T+ IL++ + GK EA+E +E+ +G P + M+N + KQ +
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357
Query: 173 -------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
P++ TFN+LI CK+G M+D+ L
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAG----------------------MVDDGLEL 395
Query: 220 LCNLVEDG-----------HKLFPSLGQFDDAFCFFSEM 247
C + G + F +G + + F EM
Sbjct: 396 FCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ M +G VPD T++ ++N C ++ EA + + K F+P + + ++ K
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G V D +E C+ G G+ A+ T I K I+ + + ++ G
Sbjct: 386 AGMVDD------GLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG 438
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 33/149 (22%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
PD ++ +++ G+ +AQ E+ DKG P + + A+++
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS---IPAVSKEFMIDEAFRL 219
+ +M+ + PD+ TF+ LI + K G+L D+ IS P V +
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNV-----------V 258
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
CN + DG G+ DA F MQ
Sbjct: 259 TCNTLLDG---LCDSGKLKDALEMFKAMQ 284
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 73/203 (35%), Gaps = 57/203 (28%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M+ + PD T + L+NA G + AQ+ LQE+ G P V + +++ + G
Sbjct: 212 EMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSG 271
Query: 171 SV---------------------------PDLETFNSLIETICKSGEL------------ 191
+ PD++T+N LI + G+
Sbjct: 272 KLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 331
Query: 192 -GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF-PSL-------------GQ 236
G+ D T I + K+ +DEA ++ ++ G K F P++ G
Sbjct: 332 RGIVPDTVTYSSMINGLCKQSRLDEATQMFDSM---GSKSFSPNIVTFNTLITGYCKAGM 388
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
DD F EM + N Y
Sbjct: 389 VDDGLELFCEMGRRGIVANAITY 411
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 62/272 (22%)
Query: 28 DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF 87
DI RTL + T + + M ++LM + + +++I + K +D A+ VF
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399
Query: 88 NKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
+K V+ Y ++ + F +MI +G P+ +T L++ C+
Sbjct: 400 SKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTC 459
Query: 135 GKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQGSVPDLETF 178
K +A+E + E+ D+G FN + S ++++ + M++ G PD+ T+
Sbjct: 460 DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 519
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--------- 229
N+LI+ C +G++ DEA +LL ++V G K
Sbjct: 520 NTLIDGCCLAGKM----------------------DEATKLLASMVSVGVKPDIVTYGTL 557
Query: 230 --LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + + DDA F EM PN Y
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNIITY 589
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 66/236 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S II K +D A+EV N M++ G +PD T+
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNT----------------------MVKNGVMPDCMTYN 275
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------RS--AKQMVNKMIKQ 169
+++ +CSSG+ +EA L+++ G P V RS A+++ + M K+
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ T+ +L++ G L G+ D + I I A +K+ +D+A
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395
Query: 217 FRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + + H L P++ G DDA +F +M + PN VY
Sbjct: 396 MLVFSKMRQ--HGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVY 449
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 35/147 (23%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G PD T+ L++ C +GKM EA + L + G P + + ++N
Sbjct: 504 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 563
Query: 165 ------------KMIKQGSVPDLETFNSLIE----------------TICKSGELGLCAD 196
+M+ G P++ T+N +++ +I KSG +
Sbjct: 564 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ---LE 620
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNL 223
++T I + + K + DEA R+ NL
Sbjct: 621 LSTYNIILHGLCKNNLTDEALRMFQNL 647
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G PD ++ ++N + G +A E+ D+G P V + A
Sbjct: 196 GSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKA 255
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+++N M+K G +PD T+NS++ C SG+
Sbjct: 256 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 286
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-F 178
+ RT I++ A G+M EA++ S G P VR+ M +I+QGS+ +L+ F
Sbjct: 655 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLF 714
Query: 179 NSLIETICKS 188
S+ E C +
Sbjct: 715 LSMEENGCSA 724
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T ++I+ K+ L D A+ +F + Q +N + ++ R
Sbjct: 623 TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAH 682
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G VPD RT++++ G + E + + + G + R +V K++++G +
Sbjct: 683 SANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDI 742
Query: 173 PDLETFNSLIE 183
T+ +I+
Sbjct: 743 TRAGTYLFMID 753
>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Cucumis sativus]
Length = 476
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 97/246 (39%), Gaps = 48/246 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+MW+ ++ M V +T ++I G+ GL VE F K FN + YN+ L
Sbjct: 169 AMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAIL 228
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H + +M+ PD T+ +L+ + C GK+ + L E++ KGF+
Sbjct: 229 HGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDEMARKGFS 288
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-- 195
P + A ++N M + G P++ F +LI + ++G L C
Sbjct: 289 PDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYF 348
Query: 196 -DVNTNKISIP-AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHP 253
D N IP V MI F GQ + A FF EM +K
Sbjct: 349 FDELGNNGCIPDVVCYTVMITS---------------FTEAGQHEKARAFFDEMIMKGQL 393
Query: 254 PNRPVY 259
PN Y
Sbjct: 394 PNVFTY 399
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F MI KG +P+ T+ ++ +C GK +EA L E+ +G P +V+ +
Sbjct: 384 FDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRN 443
Query: 169 QGSVPDLETFNSLIETICKSGE 190
G + + + +I+ + ++G+
Sbjct: 444 AGKLGEA---HKVIKQMVENGQ 462
>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Cucumis sativus]
Length = 476
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 97/246 (39%), Gaps = 48/246 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+MW+ ++ M V +T ++I G+ GL VE F K FN + YN+ L
Sbjct: 169 AMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAIL 228
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H + +M+ PD T+ +L+ + C GK+ + L E++ KGF+
Sbjct: 229 HGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDEMARKGFS 288
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-- 195
P + A ++N M + G P++ F +LI + ++G L C
Sbjct: 289 PDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYF 348
Query: 196 -DVNTNKISIP-AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHP 253
D N IP V MI F GQ + A FF EM +K
Sbjct: 349 FDELGNNGCIPDVVCYTVMITS---------------FTEAGQHEKARAFFDEMIMKGQL 393
Query: 254 PNRPVY 259
PN Y
Sbjct: 394 PNVFTY 399
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F MI KG +P+ T+ ++ +C GK +EA L E+ +G P +V+ +
Sbjct: 384 FDEMIMKGQLPNVFTYNSMIRGFCMVGKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRN 443
Query: 169 QGSVPD 174
G + +
Sbjct: 444 AGKLGE 449
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W I+LMK + + +T S+++ + + GL A+ FN+ +NC+ + ++ L
Sbjct: 167 WHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISI 226
Query: 109 FVRMIRKG------------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
R R F PD +T LV WC +G + EA+ E+ G P V
Sbjct: 227 LCRKRRASEAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNV 286
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A + +M+ G P+ T+NSL+ K+G
Sbjct: 287 YTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAG 335
>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
Length = 536
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 60/252 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM------------ 112
+T +++I G + A+E+ + F C+ ++ YN+L F +
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD 266
Query: 113 IRKGFV--PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
++ G V PD T+T +++ +C +GKMREA L ++ G P
Sbjct: 267 VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ +A+++ KMI G PD+ TF SLI+ C+ G++ G+ + T
Sbjct: 327 EMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYS 386
Query: 202 ISIPAVSKEFMIDEAFRLLCNL--------------VEDGHKLFPSLGQFDDAFCFFSEM 247
I I A+ E + +A LL L V DG F G+ ++A EM
Sbjct: 387 ILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDG---FCKAGKVNEANVIVEEM 443
Query: 248 QIKTHPPNRPVY 259
+ K P++ +
Sbjct: 444 EKKKCKPDKITF 455
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 31/163 (19%)
Query: 60 LSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK 115
L ++P T +++++ + K G + A E+ K +F C V+ + SL C V + +
Sbjct: 306 LGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQ 365
Query: 116 GF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP--- 154
GF P+ T++IL+NA C+ ++ +A+E L +L+ K +NP
Sbjct: 366 GFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425
Query: 155 ------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A +V +M K+ PD TF LI C G +
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468
>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 536
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 60/252 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM------------ 112
+T +++I G + A+E+ + F C+ ++ YN+L F +
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD 266
Query: 113 IRKGFV--PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
++ G V PD T+T +++ +C +GKMREA L ++ G P
Sbjct: 267 VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ +A+++ KMI G PD+ TF SLI+ C+ G++ G+ + T
Sbjct: 327 EMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYS 386
Query: 202 ISIPAVSKEFMIDEAFRLLCNL--------------VEDGHKLFPSLGQFDDAFCFFSEM 247
I I A+ E + +A LL L V DG F G+ ++A EM
Sbjct: 387 ILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDG---FCKAGKVNEANVIVEEM 443
Query: 248 QIKTHPPNRPVY 259
+ K P++ +
Sbjct: 444 EKKKCKPDKITF 455
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 31/163 (19%)
Query: 60 LSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK 115
L ++P T +++++ + K G + A E+ K +F C V+ + SL C V + +
Sbjct: 306 LGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQ 365
Query: 116 GF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP--- 154
GF P+ T++IL+NA C+ ++ +A+E L +L+ K +NP
Sbjct: 366 GFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425
Query: 155 ------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A +V +M K+ PD TF LI C G +
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468
>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 43/214 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-------------LHVCFVRMIRKG 116
+I + + GL + AVE+F + F C V +YN +++ + M R G
Sbjct: 116 VISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDG 175
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
F P+ T+ +L+ A C + K+ A++ L E+S+KG P S +++ M + G V
Sbjct: 176 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGR 235
Query: 173 -------PDLETFNSLIETICK----SGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
P + +N+LI +CK G + L +++ IS +S +I+E
Sbjct: 236 QLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINE------ 289
Query: 222 NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ GQ + AF ++M + PN
Sbjct: 290 ---------LSNSGQIELAFSLLAQMLKRGCHPN 314
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 34/164 (20%)
Query: 41 TLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL 100
T L MW ++++ L + +++ F HG ID AV VF C +
Sbjct: 330 TTFDALDMWN--QMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIR 387
Query: 101 LYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
Y SL F + M+ G P+ +T +V A C K +EA+ ++ +
Sbjct: 388 TYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIM 447
Query: 148 SDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
S K+ P + TFN+ I+ +C +G L
Sbjct: 448 S-------------------KENCAPSVPTFNAFIKGLCDAGRL 472
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 30/152 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFVR------------M 112
+ S +I E G I+ A + + C + +SL CFVR M
Sbjct: 282 SYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQM 341
Query: 113 IRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-------- 163
IR G P+ + LV +CS G + +A + + G +P +R+ ++
Sbjct: 342 IRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGS 401
Query: 164 --------NKMIKQGSVPDLETFNSLIETICK 187
NKM+ G P++ + S++E +C+
Sbjct: 402 LEGAVYIWNKMLTSGCCPNVVVYTSMVEALCR 433
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 28/165 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ KG P+ +++ L+N +SG++ A L ++ +G +P + +
Sbjct: 271 MVEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGT 330
Query: 159 ---AKQMVNKMIKQ-GSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A M N+MI+ G P++ +N+L++ C G + +S+ +E
Sbjct: 331 TFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNI-------DKAVSVFLHMEEIGCS 383
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
R +L+ F G + A +++M PN VY
Sbjct: 384 PNIRTYGSLING----FTKRGSLEGAVYIWNKMLTSGCCPNVVVY 424
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 89/241 (36%), Gaps = 40/241 (16%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
M ++LM + LS ++ + K G+ID A+++FNK V+ Y +L
Sbjct: 293 MHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALID 352
Query: 106 -----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
V F +MI +G P+ LV C+ K A+E + E+ D+G P
Sbjct: 353 ALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICP 412
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN 198
V +++++ M G PD ++ LI C +G V
Sbjct: 413 NAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVF 472
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
+SI E + C S + DDA+C F EM K P
Sbjct: 473 DGMVSIGLSPTEVTYNTLLHGYC-----------SASRIDDAYCLFREMLRKGVTPGVVT 521
Query: 259 Y 259
Y
Sbjct: 522 Y 522
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 44/182 (24%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
L++ F +MI G P+ T+ L++ + S GK +E + L+++S +G P
Sbjct: 222 LFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKP------ 275
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL----------GLCADVNTNKISIPAVSKE 210
D T+ SL+ +C E+ GL D + I A +K
Sbjct: 276 -------------DCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKC 322
Query: 211 FMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPNRP 257
MID+A + + + H L P+ LG+ DDA F++M + PN
Sbjct: 323 GMIDKAMDIFNKMRQ--HGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIV 380
Query: 258 VY 259
V+
Sbjct: 381 VF 382
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 43/219 (19%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC 108
K + M LS T + ++ + ID+A +F + V+ YN+ LH
Sbjct: 470 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 529
Query: 109 F------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
F + MI G D T+ I++N C S + EA + Q L KG +
Sbjct: 530 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNI 589
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ M+ ++K G K + L A + N + +P V ++ E
Sbjct: 590 ITFTIMIGALLKGGR---------------KEDAMDLFAAIPANGL-VPNVVTYRLVAE- 632
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
NL+E+G SL +FD FS M+ PN
Sbjct: 633 -----NLIEEG-----SLEEFDS---LFSAMEKNGTAPN 658
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 57/239 (23%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
++ MK + +S +I + + GL + A+++F + F CQ V +YN L
Sbjct: 102 LQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLS 161
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
+ M R G P+ T+ IL+ A C + ++ A + L E+S+KG P V S
Sbjct: 162 ENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVS 221
Query: 159 AKQMVNKMIKQGSV-----------PDLETFNSLIETICKSGELGLCADVNTNKISIPAV 207
+++ M K G V P++ +N+LI C
Sbjct: 222 YTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFC--------------------- 260
Query: 208 SKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+E+ + E F LL +VE G +G + A +++M ++ PN
Sbjct: 261 -REYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPN 318
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T S +I G ++ A+ V+ K C V + SL + RM
Sbjct: 286 TYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRM 345
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+GF P+ + L++ CS GKM EA ++ G +P V +
Sbjct: 346 AEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDL 405
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A ++ NKM+ G +P++ + S++ +C+S
Sbjct: 406 VGASEIWNKMMTNGCIPNVVVYTSMVNVLCRS 437
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 85/227 (37%), Gaps = 56/227 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I HG + AV V +K C V Y +L F + M+ G
Sbjct: 360 LIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNG 419
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
+P+ +T +VN C S +A ++++S N P P+
Sbjct: 420 CIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTD--NCP-----------------PNTV 460
Query: 177 TFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
TFN+ I+ +C SG + G ++ T + + KE I EA L+ +
Sbjct: 461 TFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEM 520
Query: 224 VEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E G +L F ++G+F++A +M + P+ Y
Sbjct: 521 EEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITY 567
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 30/168 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W IE M D+ T + I+ G ++ A+ +F + + C + YN +
Sbjct: 444 WSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDG 503
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
++ M KG + T+ + +C+ GK EA + L ++ G P
Sbjct: 504 LLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPD 563
Query: 155 ---------------PVRSAKQMVNKMIKQGS-VPDLETFNSLIETIC 186
V++A Q+++K+ G VP++ + SL+ IC
Sbjct: 564 AITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGIC 611
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
+M+ G PD T+ L A+C GK++ A + L +LS G P
Sbjct: 554 KMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQ 613
Query: 156 --VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS-GELG 192
V A ++KM+ +G + T+N+L+ + S G LG
Sbjct: 614 IGVEEAVLYLDKMLNEGICLNAATWNALVRGLFNSLGHLG 653
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 39/173 (22%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
+PD +S + +I K G ++ A E+ + Q V +YN+L F R
Sbjct: 216 EPDVVS-----YTTVISSMSKLGKVEEAREL-----SIRFQPNVSVYNALINGFCREYKV 265
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---- 158
M+ KG P+ T++ ++++ G + A ++ +G +P V +
Sbjct: 266 KEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSL 325
Query: 159 ------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199
A + N+M ++G P++ +N+LI +C G++G V++
Sbjct: 326 MKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSS 378
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
+S +++ K G I +A ++ NK F + +YN+L +C F M
Sbjct: 322 AVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNM 381
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
KG P+ T++IL++++C GK+ A FL ++++ G V
Sbjct: 382 GHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKL 441
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
R+AK + ++MI G P++ + SLI CK GEL
Sbjct: 442 RAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL 476
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 62/263 (23%)
Query: 47 SMWKTIELMKPDSL-------SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
SM K +L + +SL +FP T S++I+ F K G +D A+ K T +
Sbjct: 364 SMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKA 423
Query: 98 CVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
V Y+SL F MI G P+ +T L++ +C G++ A
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLY 483
Query: 145 QELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
E++ KG +P + A ++ +M++ +P+ T+N LIE CK
Sbjct: 484 HEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKE 543
Query: 189 G-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL----F 231
G E GL D T + I + + EA + +L + KL F
Sbjct: 544 GNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCF 603
Query: 232 PSL-------GQFDDAFCFFSEM 247
+L G+ DDA EM
Sbjct: 604 SALLHGYCKEGRLDDALDACREM 626
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
+GF+ + T+ IL+ +C G+++EA E L + D G +P ++
Sbjct: 768 EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKE 827
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ M+ +G PD +N LI C +GEL
Sbjct: 828 AIKLWESMLNRGVNPDTVAYNFLIYGCCVTGEL 860
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 38/147 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I F K G I A EV V MI G PD +++
Sbjct: 776 TYNILIRGFCKLGRIQEAAEVL----------------------VNMIDSGISPDCISYS 813
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
++ +C G ++EA + + + ++G NP + A ++ + M+++
Sbjct: 814 TIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRR 873
Query: 170 GSVPDLETFNSLIETICKSGELGLCAD 196
G P+ T+NSLI C + AD
Sbjct: 874 GVKPNRATYNSLIHGTCLMSSVSSTAD 900
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 106/276 (38%), Gaps = 56/276 (20%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+++ +R D+Y + R L + + I M+ + T ++ I K+ +
Sbjct: 207 VSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRV 266
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKGFVPDKRTHTIL 127
AVE+ N + + V Y +L +C V MI GFVP + + L
Sbjct: 267 WEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNL 326
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
V+ L KG + SA +VNK+ K G P L +N+LI ++CK
Sbjct: 327 VDG----------------LRKKG---NIGSAFDLVNKVKKFGVAPSLFVYNALINSMCK 367
Query: 188 SGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--LFP 232
G+L GL + T I I + K +D A L + E G K ++P
Sbjct: 368 DGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYP 427
Query: 233 ---------SLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LG+ A F EM PN +Y
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +G +P+ T+T L+N C G M +A+ +E+ P + ++ + +G+
Sbjct: 696 MVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGN 755
Query: 172 VPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ ++ + L+E G A+ T I I K I EA +L N+++ G
Sbjct: 756 IEKAIQLHDVLLE--------GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSG 804
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 32/181 (17%)
Query: 34 TLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N + L+ + + I+L + + S P T +++ K G + +A +FN+
Sbjct: 838 TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEM 897
Query: 91 TAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ C+ +YN L +VC F +M+ +G PD +++TIL++ C++G++
Sbjct: 898 LEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRL 957
Query: 138 REAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSL 181
+ + ++L + G P + A + N+M K+G +P+L T+NSL
Sbjct: 958 NDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSL 1017
Query: 182 I 182
I
Sbjct: 1018 I 1018
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 29/165 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF----NCQQCVLLYN------- 103
MK +S + + +I F K + D A+E+FN A N VL N
Sbjct: 372 MKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQ 431
Query: 104 SLHVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
SL + M KG VPD ++ + SG++ A+ EL G +P +
Sbjct: 432 SLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTM 491
Query: 162 MV----------------NKMIKQGSVPDLETFNSLIETICKSGE 190
M+ + M++ G VPD+ NSLI+T+ K G+
Sbjct: 492 MIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGK 536
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+ G VPD L++ GK EA + +L + P
Sbjct: 509 FSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGR 568
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
V+ Q++ +M + P+L T+N++++ + K+GE+ G D+++
Sbjct: 569 EGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSS 628
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
+ + KE ++EAFR+ C +
Sbjct: 629 YNTVMYGLIKEERLEEAFRMFCQM 652
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 57/228 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ + +++ + G +D A+ VF++ YNSL F++ M
Sbjct: 348 SYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHM 407
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G P+ TH + +N + SG+ +A + + + KG V
Sbjct: 408 NACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGI-------------------V 448
Query: 173 PDLETFNSLIETICKSGELGLCA-------------DVNTNKISIPAVSKEFMIDEAFRL 219
PD+ N+++ ++ SG LG+ D T + I SK DEA
Sbjct: 449 PDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNF 508
Query: 220 LCNLVEDG--------HKLFPSL---GQFDDAFCFFSEM-QIKTHPPN 255
++VE G + L +L G+ ++A+ F ++ ++K P N
Sbjct: 509 FSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTN 556
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN----------- 103
M D +S +T S+++ FGK +D + + N+ A + V Y
Sbjct: 197 MVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAAR 256
Query: 104 ---SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL--SDK-------- 150
+ H+ +M G PD THT+++ C +G++ +A+ ++ SD+
Sbjct: 257 FDEAYHI-LGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYI 315
Query: 151 ------GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
G + +S ++ N M+ G ++ ++ ++++ +C+ G +
Sbjct: 316 TLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRV 362
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 32/206 (15%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYN--------SLHV-----CFVRMIRKGFVPDKRTHT 125
LID A ++F + C YN S+ V M RKG+ T+
Sbjct: 781 LIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYN 840
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-FNSLIET 184
+++ S ++ +A + L +GF+P + +++ ++K G + D E FN ++E
Sbjct: 841 TIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEY 900
Query: 185 ICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL-- 234
C+ +N ++I+ + +L +VE G L +L
Sbjct: 901 GCEPNCTIYNILLNGHRIAGNT-------ENVCQLFEKMVEQGINPDIKSYTILIDTLCT 953
Query: 235 -GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ +D C+F ++ P+ VY
Sbjct: 954 AGRLNDGLCYFRQLHELGLEPDLIVY 979
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 44/247 (17%)
Query: 46 LSMWKTIE--LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
S WK L + SL++ P T +++++ K G + A V T + V+
Sbjct: 286 FSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVT 345
Query: 102 YNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y+SL F MI KG PD ++ IL+N +C ++ EA++ E+
Sbjct: 346 YSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMI 405
Query: 149 DKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
+G P +R A+ + M G++P+L T++ L++ CK G G
Sbjct: 406 HQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFG 465
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
+ S + M + +C G DA FSE+ +K
Sbjct: 466 KAFRLFRAMQSTYSKPNLVMYNILIDAMC-----------KSGNLRDARKLFSELFVKGL 514
Query: 253 PPNRPVY 259
PN +Y
Sbjct: 515 QPNAQIY 521
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 45/224 (20%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+S+ K +EL LS TLS++I F +D A V K Q ++ + +L
Sbjct: 118 ISLTKQMELA---GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTL 174
Query: 106 --HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+C F M+ +G PD T+T ++N C G+ A L+++ + G
Sbjct: 175 INWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGC 234
Query: 153 NPPVRSAKQMVNK----------------MIKQGSVPDLETFNSLIETICKSGE------ 190
P V + +++ M +G PD+ T+NSLI+ +C +
Sbjct: 235 QPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASA 294
Query: 191 -------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
L + D+ T + + + KE + EA +L + E G
Sbjct: 295 LLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMG 338
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S++++ F K G A +F + + +++YN
Sbjct: 450 TYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYN---------------------- 487
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIET 184
IL++A C SG +R+A++ EL KG P + ++N + K+G + + LE F ++ E
Sbjct: 488 ILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEED 547
Query: 185 ICKSGEL 191
C E+
Sbjct: 548 GCPPDEI 554
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 86/231 (37%), Gaps = 56/231 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRM 112
T + II K G A + K CQ V+ Y+++ H F M
Sbjct: 205 TYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM 264
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG PD T+ L+ C+ + +EA L E+ RS M
Sbjct: 265 KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEM---------RSLNIM---------- 305
Query: 173 PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD+ TFN L++TICK G E+G+ DV T + S + EA +L
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365
Query: 220 LCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ G K + + + D+A F+EM + PN Y
Sbjct: 366 FDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSY 416
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 55/263 (20%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++M D P +S +I F K G +D A +++ V+ YNS+
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAAL 244
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M++ G +P+ RT+ +V+ +CSSG+ +EA FL+++ G P V
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCAD 196
+ A++M + M K+G P++ T+ +L++ G L GL
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 197 VNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
+ N I I A +K+ +D+A + + + G + G+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+DA +F +M + P VY
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVY 447
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 103/254 (40%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + K G +D A+ VF+K
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK---------------- 399
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------VRS 158
M ++G PD T+ ++ C SG++ +A + +++ D+ +P + S
Sbjct: 400 ------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
AK+++ +M+ +G D FNS+I++ CK G +G+ +
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPN 513
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
+ T I +DEA +LL ++V G K + + + +DA F
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 574 EMESSGVSPDIITY 587
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 23/172 (13%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + RM + G +P+ ++ IL+ C + +EA E LQ + D G + P V S
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 161 QMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++N K+G + T++ +++ G+ +V T I A+ K +D+A +
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDR-------GILPNVVTYNSIIAALCKAQAMDKAMEV 256
Query: 220 LCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L ++V++G H + S GQ +A F +M P+ Y
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHG-YCSSGQPKEAIGFLKKMHSDGVEPDVVTY 307
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G P+ T++ L++ +C +GKM EA + L + G P + ++N
Sbjct: 502 FDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + DEA R+ NL
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNL 645
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 30/167 (17%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
+LM S T +I+ K G + A ++F + + C+ +YN L
Sbjct: 882 DLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKA 941
Query: 106 ----HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
C F RM+++G PD +T+++LV+ C G++ E + +EL + G NP V
Sbjct: 942 GEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCY 1001
Query: 160 KQMVNKMIK-----------------QGSVPDLETFNSLIETICKSG 189
++N + K +G PDL T+NSLI + +G
Sbjct: 1002 NLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAG 1048
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 103/246 (41%), Gaps = 57/246 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN--------------SLHVCFVR 111
T + +++ +GK G ID E++ + +A C+ + +N +L + +
Sbjct: 824 TYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDL 883
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M + F P T+ L++ SG++ EA++ + +SD G P
Sbjct: 884 MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGE 943
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
+A + +M+K+G PDL+T++ L++ +C G E GL DV +
Sbjct: 944 ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNL 1003
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQI 249
I + K ++EA +L N ++ + P L G ++A ++E+Q
Sbjct: 1004 IINGLGKFHRLEEAL-VLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1062
Query: 250 KTHPPN 255
PN
Sbjct: 1063 AGLEPN 1068
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 42/158 (26%)
Query: 54 LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
L + ++L + P T ++ I G+ G I+ A E+ R
Sbjct: 248 LKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILK----------------------R 285
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------------- 157
M +G PD T+T+L++A C++ K+ A+E ++ G + P R
Sbjct: 286 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMK-TGRHKPDRVTYITLLDRFSDNR 344
Query: 158 ---SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
S Q ++M K G VPD+ TF L++ +CK+G G
Sbjct: 345 DLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFG 382
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 48/210 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----------- 105
PDS+ T +++++ + K G ID A+++ ++ C+ V++ NSL
Sbjct: 503 PDSV-----TYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVD 557
Query: 106 --HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
F+RM P T+ L+ +GK++EA E +
Sbjct: 558 EAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE------------------ 599
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
M+++G P+ TFN+L + +CK+ E+ L + + + V F + ++ L
Sbjct: 600 -GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT---IIFGL 655
Query: 224 VEDGHKLFPSLGQFDDAFCFFSEMQIKTHP 253
V++ GQ +A CFF +M+ +P
Sbjct: 656 VKN--------GQVKEAMCFFHQMKKLVYP 677
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 53/188 (28%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
WK MK L T + ++ GK+G I A+E+F
Sbjct: 560 WKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG------------------- 600
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
M++KG P+ T L + C N V A +M+ KM+
Sbjct: 601 ---MVQKGCPPNTITFNTLFDCLCK-------------------NDEVTLALKMLFKMMD 638
Query: 169 QGSVPDLETFNSLIETICKSGEL--GLC----------ADVNTNKISIPAVSKEFMIDEA 216
G VPD+ T+N++I + K+G++ +C D T +P V K +I++A
Sbjct: 639 MGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKAGLIEDA 698
Query: 217 FRLLCNLV 224
++++ N +
Sbjct: 699 YKIIANFL 706
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 110 VRMIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+R +R+ GFV + ++ L++ S EA E + + GF P +++ + M+
Sbjct: 178 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSL---MVG 234
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G D+E+ L++ + LGL +V T I I + + I+EA+ +L + ++G
Sbjct: 235 LGKRRDIESVMGLLKEM---ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGC 291
Query: 229 KLFPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
P + + DA C F++M+ H P+R Y
Sbjct: 292 G--PDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTY 333
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
+S++ + M + G VPD T TILV+A C +G EA L + D+G P + + +
Sbjct: 347 DSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTL 406
Query: 163 VNKMIKQGSVPD-LETFNSL 181
+ +++ + D LE F+++
Sbjct: 407 ICGLLRVHRLDDALEIFDNM 426
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F+++ G +PD T+ L++A+ SGK+ E E +E+S P + +++ ++K
Sbjct: 810 FLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVK 869
Query: 169 QGSVPD-LETFNSLIE------TICKSGEL--GLCADVNTNKISIPAVSKEFMIDEAFRL 219
G+V D L+ + L+ T C G L GL + ++ E M D R
Sbjct: 870 AGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS---KSGRLYEAKQLFEGMSDYGCRP 926
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
C + F G+ D A F M + P+ Y+
Sbjct: 927 NCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYS 967
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 71/189 (37%), Gaps = 44/189 (23%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M G P T+ + ++ + SG A E +++ KG P +
Sbjct: 423 FDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAK 482
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------GLCA-DVNT 199
R AKQ+ + G VPD T+N +++ K GE+ C DV
Sbjct: 483 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIV 542
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSE 246
I + K +DEA+++ + E KL P++ G+ +A F
Sbjct: 543 VNSLINTLYKADRVDEAWKMFMRMKE--MKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG 600
Query: 247 MQIKTHPPN 255
M K PPN
Sbjct: 601 MVQKGCPPN 609
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
++ H + M KG PD T+ +++ +CSSG+ EAQ LQE+ ++ NP V +
Sbjct: 265 HSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSA 324
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
A+++ ++M+ +G +P+ T+NS+I+ CK L G
Sbjct: 325 LINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKG 384
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
DV T I ID+ LL + E G
Sbjct: 385 CSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETG 419
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 29/141 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV--- 172
G PD +T+ IL++ + GK EA+E +E+ +G P + M+N + KQ +
Sbjct: 500 GVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEA 559
Query: 173 -------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
PD+ TFN+L+ CK+G + G+ AD T I
Sbjct: 560 TQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHG 619
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
K I+ A + ++ G
Sbjct: 620 FRKVGNINGALDIFQEMISSG 640
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 87/219 (39%), Gaps = 42/219 (19%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
+FP T + +I+ F G A + + V+ Y++L +V+
Sbjct: 279 GIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEA 338
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------- 156
M+ +G +P+ T+ +++ +C ++ A+ ++ KG +P V
Sbjct: 339 EELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDG 398
Query: 157 -------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
+++++M + G V D T+N+LI C G+L D++ IS V
Sbjct: 399 YCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCP 457
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
+ + CN + DG G+ DA F MQ
Sbjct: 458 DIVT-------CNTLLDG---LCDNGKLKDALEMFKAMQ 486
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 93/241 (38%), Gaps = 56/241 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S +++ K G +++AV V + C + YN+L F + M
Sbjct: 580 TYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREM 639
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ GF P T+T L + C SG+ EA E L ++ +G P + +V+ + K G V
Sbjct: 640 LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRV 699
Query: 173 -----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
P + +++LI+ +CK+G + G DV T I
Sbjct: 700 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSI 759
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKT 251
I + ID L C + E G K + G+F A+ EM KT
Sbjct: 760 LINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEM--KT 817
Query: 252 H 252
H
Sbjct: 818 H 818
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T LII+ K G I+ A V ++ M+ +GFVPD HT
Sbjct: 108 TFGLIIKGLCKEGEIEAAFRVVDE----------------------MVDRGFVPDVEIHT 145
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG--------------- 170
+L++A C G++ EA F Q++ GF P + MV+ + K G
Sbjct: 146 VLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAES 205
Query: 171 -SVPDLETFNSLIETICKSGEL 191
S P + TF ++ + K+G L
Sbjct: 206 FSSPTVFTFTIAVDGLSKAGNL 227
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 59/250 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I K G + +A F K F + V+ Y+++ R M
Sbjct: 3 TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+G P+ T+ LVNA G+ +EA L+ ++ G P +
Sbjct: 63 AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKIS 203
+A ++V++M+ +G VPD+E L+ +C+ G +G D T
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182
Query: 204 IPAVSKEFMIDEAFRLLCNLVE--------------DGHKLFPSLGQFDDAFCFFSEMQI 249
+ + K ++ A +L L E DG G A+ FF M
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDG---LSKAGNLTGAYEFFDSMPQ 239
Query: 250 KTHPPNRPVY 259
PN Y
Sbjct: 240 TGVSPNTVTY 249
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMIR G +PD T +IL+N C +G++ E ++++G + + M+N +G
Sbjct: 744 RMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKG 803
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
F++ + + G+ + T+ I I A+ IDEA ++ ED
Sbjct: 804 E------FSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED 853
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 99/273 (36%), Gaps = 83/273 (30%)
Query: 49 WKTIELMK-PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
++ +ELM+ + S T S +I+ G ++ A EV+ + A
Sbjct: 365 YRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAV-------------- 410
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------ 155
+G P++ T+ L+ C +G R ++ +++ ++ +
Sbjct: 411 -------EGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDF 463
Query: 156 -------------------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG- 189
VR A ++ MI+ G PD+ TFNS+++ +CK
Sbjct: 464 LMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQR 523
Query: 190 ------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL------- 230
E G +V T I +SK +DEA +LL +VE G +
Sbjct: 524 ILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYST 583
Query: 231 ----FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+G+ +DA +M+ P+ Y
Sbjct: 584 VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTY 616
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 25/159 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F +++ GF PD T+ +V+ +G++ A LQ L++ +P V
Sbjct: 164 FQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSK 223
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVS 208
A + + M + G P+ T+++LI+ +CK+G+ LGL D N+ S
Sbjct: 224 AGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSS 283
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+ +A RL E+ +L ++ + CF S M
Sbjct: 284 LLHGLCQAHRL-----EEAIQLLKAMPCVPNVVCFNSLM 317
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 33/193 (17%)
Query: 26 RHDIYAERTLNRLNLTLISELSM-WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAV 84
+ DIYA + L E S + +E MK ++ T ++I+ + ID AV
Sbjct: 786 KADIYAYNAMIN-AYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAV 844
Query: 85 EVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAW 131
F+ +C+ + YN+L V M+ G PD + +++
Sbjct: 845 SYFHSIPE-DCRD-EISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGL 902
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRS----------AKQM------VNKMIKQGSVPDL 175
+G A + LQE+ +G +P +R+ AKQ+ +M+++ PD
Sbjct: 903 FKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDA 962
Query: 176 ETFNSLIETICKS 188
++SLI+ CK+
Sbjct: 963 IVYSSLIDAFCKA 975
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 29/167 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E M LS T + +++ K I +A VF + C+ V+ Y++L
Sbjct: 496 LEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSK 555
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--- 155
+M+ G + T++ +V+ G+M +A L+++ D G P
Sbjct: 556 MAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVT 615
Query: 156 -------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+R A ++ +M++ G P + T+ +L +C+SG
Sbjct: 616 YNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSG 662
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+RK PD ++ L++A+C + K+ +A + L+ G P + MV+ + K
Sbjct: 950 FEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSLCK 1006
Query: 169 -QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
+G+ LE + C+ G ++ A E +DEA +L+ +L
Sbjct: 1007 NRGTDKALEVIREMKSKNCEPG-------IHIWTSLATAYVAEGRVDEAVKLVNDL 1055
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 86/227 (37%), Gaps = 34/227 (14%)
Query: 48 MWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWK I+ M + + V P LS II G +I AV +F + CQ YNS+
Sbjct: 138 MWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMI 197
Query: 106 ------------HVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M +G PD T++ L++A+C G+ A L E+ D G
Sbjct: 198 IMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGM 257
Query: 153 NPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
P + ++ K +V L F + C+ DV T I + K
Sbjct: 258 QPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRP-------DVFTYTELIRGLGKAG 310
Query: 212 MIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEM 247
DEA+ + +G + G+ DDA F EM
Sbjct: 311 RFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEM 357
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
+PD++ ++ +I GK G +D+AV++F + C V+ YN++
Sbjct: 328 RPDTV-----VINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSR 382
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
F RM G P T++IL++ +C + + +A L+E+ +KGF P
Sbjct: 383 ISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPP 435
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 29/162 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
+K + S + +++I+ GK G +D+AV +F++ C V YN+L
Sbjct: 463 LKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGM 522
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
RM G +PD ++ I++N +G A E L + P S
Sbjct: 523 LDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNT 582
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +++ +M G DL T++S++E I K
Sbjct: 583 VLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGK 624
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 64/247 (25%)
Query: 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
ISE+S W E MK +S P T S++I+ F K + A+ + +
Sbjct: 383 ISEISSW--FERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE------------- 427
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----- 157
M KGF P + L++A + + A E QEL + + R
Sbjct: 428 ---------MDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVM 478
Query: 158 -----------SAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGL 193
A + ++M K G P++ +N+L+ + ++G E G
Sbjct: 479 IKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGC 538
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFC 242
D+N+ I + ++K A +L N+ + K G F++A
Sbjct: 539 IPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAK 598
Query: 243 FFSEMQI 249
EM +
Sbjct: 599 LMKEMNV 605
>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 418
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 46/223 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------- 191
V A ++ +M+ Q PDL T+N+LI +CK G+L
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDE 301
Query: 192 ----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE ++ AF+ ++++ +L
Sbjct: 302 MSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRL 344
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+E++ + M+ + PD T+
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQ----------------------MLSQSLSPDLITYN 280
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L+ C G +++AQ+ + E+S KG P + +A + +MIK+
Sbjct: 281 TLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKE 340
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
D + +LI +C+ G +GL ++ T + I K+ +
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400
Query: 217 FRLLCNLVEDGH 228
+LL + DG+
Sbjct: 401 SKLLKEMQRDGY 412
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 29/154 (18%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMI 113
+S +++ K G I +A ++ NK F + +YN+L +C F M
Sbjct: 323 VSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMG 382
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------R 157
KG P+ T++IL++++C GK+ A FL ++++ G V R
Sbjct: 383 HKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLR 442
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+AK + ++MI G P++ + SLI CK GEL
Sbjct: 443 AAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL 476
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 107/284 (37%), Gaps = 70/284 (24%)
Query: 47 SMWKTIELMKPDSL-------SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
SM K +L + +SL +FP T S++I+ F K G +D A+ K T +
Sbjct: 364 SMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKA 423
Query: 98 CVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
V Y+SL F MI G P+ +T L++ +C G++ A
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLY 483
Query: 145 QELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
E++ KG +P + A ++ +M++ +P+ T+N LIE CK
Sbjct: 484 HEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKE 543
Query: 189 G-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL----- 230
G E GL D T + I + + EA + +L + KL
Sbjct: 544 GNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEG 603
Query: 231 -FPS-------------LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
P+ +G D A EM PN+ YA
Sbjct: 604 CLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYA 647
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
++ +GF+ + T+ IL+ +C G+++EA E L + D G +P
Sbjct: 668 VLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGD 727
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++ A ++ M+ +G PD +N LI C +GEL
Sbjct: 728 LKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGEL 763
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 38/154 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I F K G I A EV V MI G PD +++
Sbjct: 679 TYNILIRGFCKLGRIQEAAEVL----------------------VNMIDSGISPDCISYS 716
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
++ +C G ++EA + + + ++G NP + A ++ + M+++
Sbjct: 717 TIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRR 776
Query: 170 GSVPDLETFNSLIETICKSGELGLCADVNTNKIS 203
G P+ T+NSLI C + AD + K++
Sbjct: 777 GVKPNRATYNSLIHGTCLMSSVSSTADYFSCKLN 810
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 106/276 (38%), Gaps = 56/276 (20%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+++ +R D+Y + R L + + I M+ + T ++ I K+ +
Sbjct: 207 VSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRV 266
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKGFVPDKRTHTIL 127
AVE+ N + + V Y +L +C V MI GFVP + + L
Sbjct: 267 WEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNL 326
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
V+ L KG + SA +VNK+ K G P L +N+LI ++CK
Sbjct: 327 VDG----------------LRKKG---NIGSAFDLVNKVKKFGVAPSLFVYNALINSMCK 367
Query: 188 SGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--LFP 232
G+L GL + T I I + K +D A L + E G K ++P
Sbjct: 368 DGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYP 427
Query: 233 ---------SLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LG+ A F EM PN +Y
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 39/186 (20%)
Query: 95 CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C++ L ++++ ++I+ G+ PD T + L+N C G++ EA E + + + G P
Sbjct: 120 CRKLSLAFSAMG----KIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV- 197
V A ++++M++ G P+ T+ +++ +CKSG+ L ++
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235
Query: 198 ---NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
KI + AV +ID L +D G D+AF F+EM+IK
Sbjct: 236 RKMEERKIKLDAVKYSIIID-------GLCKD--------GSLDNAFNLFNEMEIKGFKA 280
Query: 255 NRPVYA 260
+ +Y
Sbjct: 281 DIIIYT 286
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMIR 114
S+II+ K G +DNA +FN+ + +++Y +L C+ MI+
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
+ PD + L++ + GK+REA+E +E+ +G +P +
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A M++ M+ +G P++ TFN LI CK+
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKA 400
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 43/208 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+T +++I + K LID+ +E+F K M +G V D T+
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRK----------------------MSLRGVVADTVTY 425
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD--LETFNSLI 182
L+ +C GK+ A+E QE+ + P + S K +++ + G P+ LE F
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE-PEKALEIF---- 480
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL 234
E I KS + D+ I I + +D+A+ L C+L G K + L
Sbjct: 481 EKIEKS---KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537
Query: 235 ---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G +A F +M+ H PN Y
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTY 565
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I F G D+ ++ V+ +++L CFV+ MI++G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------ 164
PD T+T L++ +C ++ +A L + KG P +R+ ++N
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407
Query: 165 ----KMIKQGSVPDLETFNSLIETICKSGEL 191
KM +G V D T+N+LI+ C+ G+L
Sbjct: 408 ELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN---PPVRSAKQMVNK 165
F +M G P+ T+ IL+ A G ++ + ++E+ GF+ +R A + +
Sbjct: 550 FRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLAR 609
Query: 166 MIKQGSVPDLETFNSLIETIC 186
M+K G PD+ TF +L+ C
Sbjct: 610 MLKAGHEPDVFTFTTLLRPFC 630
>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
Length = 556
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 42/192 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+++++ G PD T+T L+ +C +G+ E ++ + E+ +K NP V +
Sbjct: 247 YLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCR 306
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNT 199
A+ M N M+K+G PD+ TFN+LI C G E G+ DV +
Sbjct: 307 KGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWS 366
Query: 200 NKISIPAVSKEFMIDEAFRLL----C-NLVEDGHKLFPSL-------GQFDDAFCFFSEM 247
I I K IDEA L C N+V D L+ SL G+ A+ FS +
Sbjct: 367 YTILIIGYCKCKRIDEAVSLFNEMRCKNMVLD-IVLYSSLIDGLCKSGRISYAWELFSTI 425
Query: 248 QIKTHPPNRPVY 259
PPN Y
Sbjct: 426 NNDGPPPNVITY 437
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I+ F + G + A +FN Q ++ +N+L F +
Sbjct: 296 TFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTV 355
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+G +PD ++TIL+ +C ++ EA E+ K + +++ + K G +
Sbjct: 356 FERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRI 415
Query: 173 ----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
P++ T+N LI+ CK ++ GL V T I
Sbjct: 416 SYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNIL 475
Query: 204 IPAVSKEFMIDEAFRLLC-----NLVEDG---HKLFPSL---GQFDDAFCFFSEMQIKTH 252
I K I EA LL NL D + LF L G+ DA+ F M +
Sbjct: 476 INGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGP 535
Query: 253 PPNRPVY 259
P + Y
Sbjct: 536 PVDVATY 542
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 29/154 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIR 114
S +I+ K G I A E+F+ V+ YN L F + M
Sbjct: 403 SSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCG 462
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP- 173
KG P T+ IL+N +C S ++REA L + K P + + + + K G +
Sbjct: 463 KGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISD 522
Query: 174 ---------------DLETFNSLIETICKSGELG 192
D+ T+N L++ CK+ ++
Sbjct: 523 AWELFKVMHVGGPPVDVATYNVLLDAFCKAQDVA 556
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 21/107 (19%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------S 158
+G + D+ + L+N C G+ +A + LQE+ + P +
Sbjct: 183 QGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCK 242
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-----LCADVNTN 200
A+ + K++ G PD+ T+ SLI C++G+ G +C VN N
Sbjct: 243 ARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKN 289
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 43/193 (22%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKGFVPDKRTHTI 126
ID+AV +FN V+ +N++ V+M + KG P T +I
Sbjct: 65 IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
+N +C G+M GF A ++ ++K+G P+ T ++++ +C
Sbjct: 125 WINCYCHLGEM-------------GF------AFSVLGIVLKRGYQPNNITLTTVMKGLC 165
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
+GE+ D + N + + E LC +G+ DAF E
Sbjct: 166 INGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLC-----------KIGRSIDAFQLLQE 214
Query: 247 MQIKTHPPNRPVY 259
M+ + PN +Y
Sbjct: 215 MEGQVVKPNIVIY 227
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 39/186 (20%)
Query: 95 CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C++ L ++++ ++I+ G+ PD T + L+N C G++ EA E + + + G P
Sbjct: 120 CRKLSLAFSAMG----KIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV- 197
V A ++++M++ G P+ T+ +++ +CKSG+ L ++
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235
Query: 198 ---NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
KI + AV +ID L +D G D+AF F+EM+IK
Sbjct: 236 RKMEERKIKLDAVKYSIIID-------GLCKD--------GSLDNAFNLFNEMEIKGFKA 280
Query: 255 NRPVYA 260
+ +Y
Sbjct: 281 DIIIYT 286
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMIR 114
S+II+ K G +DNA +FN+ + +++Y +L C+ MI+
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
+ PD + L++ + GK+REA+E +E+ +G +P +
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A M++ M+ +G P++ TFN LI CK+
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKA 400
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 43/208 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+T +++I + K LID+ +E+F K M +G V D T+
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRK----------------------MSLRGVVADTVTY 425
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD--LETFNSLI 182
L+ +C GK+ A+E QE+ + P + S K +++ + G P+ LE F
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE-PEKALEIF---- 480
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL 234
E I KS + D+ I I + +D+A+ L C+L G K + L
Sbjct: 481 EKIEKS---KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537
Query: 235 ---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G +A F +M+ H PN Y
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTY 565
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic; AltName: Full=Protein PROTON GRADIENT
REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 34/198 (17%)
Query: 22 ANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLID 81
AN + H+I + N+ L ++ +LM S T +I+ K G +
Sbjct: 853 ANTITHNIVISGLVKAGNVD--DALDLY--YDLMSDRDFSPTACTYGPLIDGLSKSGRLY 908
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILV 128
A ++F + C+ +YN L C F RM+++G PD +T+++LV
Sbjct: 909 EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLV 968
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK-----------------QGS 171
+ C G++ E + +EL + G NP V ++N + K +G
Sbjct: 969 DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028
Query: 172 VPDLETFNSLIETICKSG 189
PDL T+NSLI + +G
Sbjct: 1029 TPDLYTYNSLILNLGIAG 1046
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 57/246 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN--------------SLHVCFVR 111
T + +++ +GK G ID E++ + + C+ + +N +L + +
Sbjct: 822 TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDL 881
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M + F P T+ L++ SG++ EA++ + + D G P
Sbjct: 882 MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
+A + +M+K+G PDL+T++ L++ +C G E GL DV +
Sbjct: 942 ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNL 1001
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQI 249
I + K ++EA +L N ++ + P L G ++A ++E+Q
Sbjct: 1002 IINGLGKSHRLEEAL-VLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060
Query: 250 KTHPPN 255
PN
Sbjct: 1061 AGLEPN 1066
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 66/245 (26%)
Query: 54 LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
L + ++L + P T ++ I G+ G I+ A E+ R
Sbjct: 246 LKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILK----------------------R 283
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------------- 157
M +G PD T+T+L++A C++ K+ A+E +++ G + P R
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK-TGRHKPDRVTYITLLDRFSDNR 342
Query: 158 ---SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
S KQ ++M K G VPD+ TF L++ +CK+G G+ +++T
Sbjct: 343 DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYN 402
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIK 250
I + + +D+A L N+ G K + G A F +M+ K
Sbjct: 403 TLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK 462
Query: 251 THPPN 255
PN
Sbjct: 463 GIAPN 467
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 48/210 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----------- 105
PDS+ T +++++ + K G ID A+++ ++ C+ V++ NSL
Sbjct: 501 PDSV-----TYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVD 555
Query: 106 --HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
F+RM P T+ L+ +GK++EA E +
Sbjct: 556 EAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE------------------ 597
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
M+++G P+ TFN+L + +CK+ E+ L + + + V F + ++ L
Sbjct: 598 -GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT---IIFGL 653
Query: 224 VEDGHKLFPSLGQFDDAFCFFSEMQIKTHP 253
V++ GQ +A CFF +M+ +P
Sbjct: 654 VKN--------GQVKEAMCFFHQMKKLVYP 675
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 53/188 (28%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
WK MK L T + ++ GK+G I A+E+F
Sbjct: 558 WKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG------------------- 598
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
M++KG P+ T L + C N V A +M+ KM+
Sbjct: 599 ---MVQKGCPPNTITFNTLFDCLCK-------------------NDEVTLALKMLFKMMD 636
Query: 169 QGSVPDLETFNSLIETICKSGEL--GLC----------ADVNTNKISIPAVSKEFMIDEA 216
G VPD+ T+N++I + K+G++ +C D T +P V K +I++A
Sbjct: 637 MGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDA 696
Query: 217 FRLLCNLV 224
++++ N +
Sbjct: 697 YKIITNFL 704
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 64/180 (35%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------------- 157
M + G VPD T TILV+A C +G EA + L + D+G P +
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHR 413
Query: 158 -------------------------------------SAKQMVNKMIKQGSVPDLETFNS 180
SA + KM +G P++ N+
Sbjct: 414 LDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA 473
Query: 181 LIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ ++ K+G ++GL D T + + SK IDEA +LL ++E+G
Sbjct: 474 SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG 533
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 53/201 (26%)
Query: 58 DSLSVFPQTLSLI--IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
+SL V P + I I+ +GK G +A+E F K M K
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK----------------------MKTK 462
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G P+ + + +G+ REA++ L D G P + A
Sbjct: 463 GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
+++++M++ G PD+ NSLI T+ K+ E+ L V T +
Sbjct: 523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAG 582
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
+ K I EA L +V+ G
Sbjct: 583 LGKNGKIQEAIELFEGMVQKG 603
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 110 VRMIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+R +R+ GFV + ++ L++ S EA E + + +GF P +++ + M+
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSL---MVG 232
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G D+++ L++ + LGL +V T I I + + I+EA+ +L + ++G
Sbjct: 233 LGKRRDIDSVMGLLKEM---ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGC 289
Query: 229 KLFPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
P + + DA C F +M+ H P+R Y
Sbjct: 290 G--PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F+++ G +PD T+ L++A+ SGK+ E E +E+S + +++ ++K
Sbjct: 808 FLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVK 867
Query: 169 QGSVPD-LETFNSLIE------TICKSGEL--GLCADVNTNKISIPAVSKEFMIDEAFRL 219
G+V D L+ + L+ T C G L GL + ++ E M+D R
Sbjct: 868 AGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS---KSGRLYEAKQLFEGMLDYGCRP 924
Query: 220 LC---NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
C N++ +G F G+ D A F M + P+ Y+
Sbjct: 925 NCAIYNILING---FGKAGEADAACALFKRMVKEGVRPDLKTYS 965
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 97/238 (40%), Gaps = 33/238 (13%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
++W I M+ + P+T +++ E + G D AV++F C Q + +N++
Sbjct: 107 TVWSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTIL 166
Query: 107 --VC----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C R +R F D T+ ++VN WC + +A E L+E+ D+G NP
Sbjct: 167 DVLCKSKRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINP 226
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ + M+ + G + F +E ++ E+ DV T + I
Sbjct: 227 NLTTYNTMLQGFFRAGQIRQAWEF--FLEMKKRNCEI----DVVTYTTVVHGFGVAGEIK 280
Query: 215 EAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPNRPVY 259
+ ++ +G + PS+ + ++A F EM K + PN Y
Sbjct: 281 RTRNVFDEMIREG--VLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTY 336
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ MK + + T + ++ FG G I VF++ V YN+
Sbjct: 248 WEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQV 307
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
V F M+RKG+ P+ T+ +L+ +GK +E +Q + ++G P
Sbjct: 308 LCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPN 367
Query: 156 VRSAKQMVN----------------KMIKQGSVPDLETFNSLI 182
++ M+ KM +P+L+T+N LI
Sbjct: 368 FQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILI 410
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HVCFVR 111
M+ L +T + +I+ F + GL++ A + N+ T V+ YN+ H R
Sbjct: 176 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 235
Query: 112 M----------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M + KG PD +++ +++ +C G++ A + QE+ +KG +P +
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 295
Query: 162 MV----------------NKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
++ +M+ G PD T+ +LI C G+L G
Sbjct: 296 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 355
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
D T + I ++K+ EA RLL L+
Sbjct: 356 FLPDAVTYSVLINGLNKQARTREAKRLLFKLI 387
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 35/172 (20%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
CF M R G +P+ T+ L++A+C G++ EA L+ +S KG P + S ++N +
Sbjct: 32 CFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLC 91
Query: 168 KQGSV----------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAV 207
++GS+ PD T+N+L+ CK G L + A++ N +S V
Sbjct: 92 REGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVV 151
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ +I+ +C + A FF +M+I+ PN Y
Sbjct: 152 TYTALINS----MCKAR-----------NLNRAMEFFDQMRIRGLRPNERTY 188
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 101/237 (42%), Gaps = 60/237 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR- 111
+ PD +S S II F + G +D A ++ + + Y+SL +C +R
Sbjct: 251 LAPDVVS-----YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRR 305
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M+ G PD+ T+T L+NA+C G + +A E+ KGF P
Sbjct: 306 LTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSV 365
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
R AK+++ K+I + SVP T+++LIE C+++ S+
Sbjct: 366 LINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIEN---------CSNIEFK--SVV 414
Query: 206 AVSKEF----MIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEM 247
A+ K F ++ EA R+ ++VE HK ++ G AF + EM
Sbjct: 415 ALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 471
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 32/187 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
I+EE G G + V +N C++ ++ V M+R G P T+T L+N
Sbjct: 102 ILEEMGYKGFTPDEV-TYNTLLNGYCKEGN--FHQALVIHAEMVRNGVSPSVVTYTALIN 158
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
+ C + + A EF ++ +G P R+ A +++N+M + G P
Sbjct: 159 SMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 218
Query: 174 DLETFNSLIETIC-------------KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ T+N+ I C + E GL DV + I ++ +D AF++
Sbjct: 219 SVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 278
Query: 221 CNLVEDG 227
+VE G
Sbjct: 279 QEMVEKG 285
>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 721
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 42/207 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S++I+ F + G +DNA+ +K T + + V YNSL F M
Sbjct: 229 TYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEM 288
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
I KG P T+T L++ +C+ G+ +A + E++ KG +P +
Sbjct: 289 IDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMM 348
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A ++ +M ++ +P T+N +IE C+SG + G D T +
Sbjct: 349 AEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPL 408
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL 230
I + + EA + +L +D HKL
Sbjct: 409 ISGLCSVGRVSEAKEFVDDLHKDHHKL 435
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 93/244 (38%), Gaps = 53/244 (21%)
Query: 67 LSLIIEEFGKHGL-----IDNAVEVFNKCTAFNCQQCVLLY----NSLHVCFVRMIRKGF 117
LS+++ HGL I A+E+ N + V+ Y N + F M KG
Sbjct: 164 LSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGL 223
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQ 161
+ T++IL++++C G+M A FL +++ V +AK
Sbjct: 224 CANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKY 283
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
++MI +G P + T+ SLI C GE G+ + T I +
Sbjct: 284 YFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLC 343
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPN 255
+ M+ EA RL + E K+ PS G +AF EM K P+
Sbjct: 344 RANMMAEAIRLFGEMKE--RKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPD 401
Query: 256 RPVY 259
Y
Sbjct: 402 TYTY 405
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD--------------KGFNPPVR 157
M+ KGFVPD T+ L++ CS G++ EA+EF+ +L G+ R
Sbjct: 393 MVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGR 452
Query: 158 --SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
A M+++G DL + LI+ + + GL +++ + + AV
Sbjct: 453 FKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTN 512
Query: 212 MID---------EAFRLLCNLVEDG 227
MID EAF L +V++G
Sbjct: 513 MIDRHSKAGNLKEAFGLWDIMVDEG 537
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 29/141 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M + +P + T+ +++ C SG + EA L E+ KGF P + + +++ +
Sbjct: 355 FGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCS 414
Query: 169 QGSVPDLETF----------------NSLIETICKSG-------------ELGLCADVNT 199
G V + + F ++L+ CK G E G+ D+
Sbjct: 415 VGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVC 474
Query: 200 NKISIPAVSKEFMIDEAFRLL 220
I I ++E F LL
Sbjct: 475 YAILIDGTAREHDTRALFGLL 495
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KGF+ ++ IL+ +C GK+ EA + L ++D P ++
Sbjct: 605 KGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQE 664
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ + M+ +G PD ++ L+ C +GEL
Sbjct: 665 AIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGEL 697
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 71 IEEFGK--HGLIDNAVE---------VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP 119
IEE K HG+ DN + ++ +C N Q+ + L+++ M+ KG P
Sbjct: 627 IEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHT-------MLDKGLKP 679
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
D ++ LV+ C +G++ +A E E+ +G
Sbjct: 680 DTLAYSFLVHGCCIAGELEKAFELRDEMIRRG 711
>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 418
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++E P SL F ++++ F K G I A VF+ T ++ + V+ +N+L +
Sbjct: 126 ESLECGYPASLYFF----NILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGY 181
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
++ M G PD T+++L+N C KM +A E E+ D G P
Sbjct: 182 IKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNG 241
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A ++ +M+ Q DL T+N+LI +CK G+L D+
Sbjct: 242 VTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDL 298
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNPPVRS------- 158
KG PDK T+T L++ C G + A E+ + L D + +
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G P++ T+ +I CK G++
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 45/218 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFN----KCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120
Q L L+ E GK GL N V C A N + V +++ + V +G P+
Sbjct: 330 QGLVLLSEMVGK-GLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRV-------RGLRPN 381
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVN 164
+RT+T L++ +C G M EA + L E+ GF+P V+ A ++
Sbjct: 382 ERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILR 441
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC--- 221
M+++G PD+ +++++I C+ ELG + + + + LC
Sbjct: 442 GMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQ 501
Query: 222 NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LVE AF F EM + PP+ Y
Sbjct: 502 KLVE--------------AFDLFREMMRRGLPPDEVTY 525
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 31/141 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F M+R+G PD+ T+T L+NA+C G++ +A E+ +GF P
Sbjct: 510 FREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNK 569
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF- 211
+ AK+++ K+ + SVPD T+N+LIE C + E S+ + K F
Sbjct: 570 KARTKVAKRLLLKLFYEESVPDDVTYNTLIEN-CSNNEFK----------SVEGLVKGFC 618
Query: 212 ---MIDEAFRLLCNLVEDGHK 229
+++EA R+ +++ HK
Sbjct: 619 MKGLMNEADRVFKTMLQRNHK 639
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 43/156 (27%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M KG VPD+ T+ LVN +C G + + L E+ KG +P V + ++N M K G+
Sbjct: 303 MRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGN 362
Query: 172 V----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ P+ T+ +LI+ C+ G +++E
Sbjct: 363 LSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKG----------------------LMNE 400
Query: 216 AFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
A+++L ++ G PS+ ++ +CF +Q
Sbjct: 401 AYKVLSEMIVSGFS--PSVVTYNALVHGYCFLGRVQ 434
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 66/187 (35%), Gaps = 58/187 (31%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ KG +PD T++ L+ C K+ EA + +E M+++G
Sbjct: 478 MVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFRE-------------------MMRRGL 518
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
PD T+ SLI C GEL G D T + I ++K+ A R
Sbjct: 519 PPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKR 578
Query: 219 LLCNL--------------------------VEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
LL L VE K F G ++A F M + H
Sbjct: 579 LLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNH 638
Query: 253 PPNRPVY 259
PN +Y
Sbjct: 639 KPNAAIY 645
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
Y+ F M+R G P+ T+ +++ S G + + F++
Sbjct: 188 YDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMR---------------- 231
Query: 162 MVNKMIKQGSVPDLETFNSLIETICK 187
KM K+G P++ T+N+LI+ CK
Sbjct: 232 ---KMEKEGISPNVVTYNTLIDASCK 254
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 29/148 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV---CFVR----------MIRKG 116
II+ F K GL++NA+ +F + + + YNSL C R M+ +
Sbjct: 180 IIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRD 239
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
VP+ T T L+NA+ GK EA++F +E+ + +P V + AK
Sbjct: 240 IVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAK 299
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKS 188
Q+++ M+ +G PD+ T+N+LI CK+
Sbjct: 300 QILDLMVTKGCFPDVVTYNTLINGFCKT 327
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 54/270 (20%)
Query: 7 AKTSKEDYFAAVNHIANI--VRHDIYAERT----LNRLNLTLISELSMWKTIEL-MKPDS 59
AK+ D ++ H I + HD+Y L R + +I+ + K ++ +PD
Sbjct: 80 AKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDV 139
Query: 60 LSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------H 106
+ T+S +I F + + AV++ +K C+ V++YN++
Sbjct: 140 V-----TVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNAL 194
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
V F RM R G D T+ LV C SG+ +A ++++ + P V + ++N
Sbjct: 195 VLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAF 254
Query: 167 IKQGSV----------------PDLETFNSLIETICKSGEL-------------GLCADV 197
+++G PD+ T+NS+I +C G++ G DV
Sbjct: 255 VREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDV 314
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
T I K +DE +L+ + + G
Sbjct: 315 VTYNTLINGFCKTKRVDEGTKLVREMSQRG 344
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 37/186 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
MIR+ PD T+ +++ C G++ EA++ L + KG P V + ++N
Sbjct: 270 MIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKR 329
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSG----------ELGLCADVNTNKISIP 205
+M ++G V D TFN++I+ ++G +G ++ T I +
Sbjct: 330 VDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTYSILLY 389
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPP 254
+ + +++A L ++ + +L +G +DA+ F + K P
Sbjct: 390 GLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEP 449
Query: 255 NRPVYA 260
+ Y
Sbjct: 450 DVVTYT 455
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 29/157 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRM 112
T + +I K G + AV VFNK F+ Y SL + F RM
Sbjct: 199 TFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRM 258
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
++ G P+ T++ L+N C+ G++ EA + L+E+++KG P V +
Sbjct: 259 VKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRV 318
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A +V M K+G P ++T+ ++I + ++G++ L
Sbjct: 319 DDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMEL 355
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV------ 118
QT + II+ I+ A+ VFNK V+ YN+L V +++G++
Sbjct: 408 QTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTL---IVENLKRGYLNNATRF 464
Query: 119 ----------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
PD+RT+ L++ +C GK+ A F E+ G +P + M++ K
Sbjct: 465 LYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCK 524
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G + + SL E + E G A + T I +SK EA + + E G
Sbjct: 525 EGKI---DVALSLFE---RMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQG- 577
Query: 229 KLFPSLGQFDD-------------AFCFFSEMQIKTHPPNRPVYA 260
L P+ + AF F EM+ K PN Y
Sbjct: 578 -LQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYT 621
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 82/224 (36%), Gaps = 40/224 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T ++ I G +D+A+ + C V Y ++ R M
Sbjct: 304 TYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKM 363
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--------- 163
+++G VP+ T+ L+N C+ G+ A + + G ++ Q++
Sbjct: 364 LKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDI 423
Query: 164 -------NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
NKM+K G P + T+N+LI K G L N + KE +
Sbjct: 424 EKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYL-------NNATRFLYMMKESNCEPD 476
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
R C L+ F G+ D A FF EM PN+ Y
Sbjct: 477 ERTYCELISG----FCKGGKLDSATSFFYEMLKCGISPNQWTYT 516
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 38/220 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVR 111
T + +I+ + K G ID A+ +F + C + YN++ C +
Sbjct: 514 TYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFC-AK 572
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +G P+ T+T L+N C + A + E+ K P + ++ + ++G
Sbjct: 573 MTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK 632
Query: 172 V------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
V P ++T+++L+ +C+ G + + N KE + + +
Sbjct: 633 VDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENM-------KEKGLSPSMEI 685
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C+L+ K + D A F+ M +K P+ +Y
Sbjct: 686 YCSLLVAHCKSL----KVDCALEIFNLMAVKGFQPHLFIY 721
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 37/157 (23%)
Query: 108 CFVRMIR-----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS--DKG--------F 152
CFV M+ K P +++ A + +++ +FL +S D G F
Sbjct: 106 CFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSF 165
Query: 153 NP---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------E 190
N V SA+ + ++ G P L TFN++I +CK G +
Sbjct: 166 NTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQ 225
Query: 191 LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
LC D T I + +D+AF + +V+DG
Sbjct: 226 FDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDG 262
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 24/149 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREA-----QEFLQELSDKGF----------- 152
+ ++ G P T ++N C GK++EA + F +L F
Sbjct: 185 YAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCR 244
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---NTNKISIPAVSK 209
N + A ++ ++M+K G P+ T+++LI +C G +G D+ T K P V
Sbjct: 245 NRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTV-- 302
Query: 210 EFMIDEAFRLLCNL--VEDGHKLFPSLGQ 236
+ LC++ V+D L S+G+
Sbjct: 303 -YTYTVPISSLCDIGRVDDAINLVRSMGK 330
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------R 157
M++ G +PD T+ +++ +CSSG+ +EA L+++ G P V R
Sbjct: 235 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR 294
Query: 158 S--AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
S A+++ + M K+G PD+ T+ +L++ CK G +G+ D+ T
Sbjct: 295 STEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNT 354
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKT 251
I +DEA +LL ++V G K + + + DDA F EM
Sbjct: 355 LIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG 414
Query: 252 HPPNRPVY 259
PN Y
Sbjct: 415 VSPNIITY 422
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 48/218 (22%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----- 105
T++ M+ D + T S ++ K+G A ++F+ T + + Y +L
Sbjct: 266 TLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHC 325
Query: 106 --------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
F M+R G PD T+ L++ C +GKM EA + L + G P +
Sbjct: 326 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 385
Query: 158 SAKQMVN----------------KMIKQGSVPDLETFNSLIE----------------TI 185
+ ++N +M+ G P++ T+N +++ +I
Sbjct: 386 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 445
Query: 186 CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
KSG +++T I + + K + DEA R+ NL
Sbjct: 446 TKSGTQ---LELSTYNIILHGLCKNNLTDEALRMFQNL 480
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 27/115 (23%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--GFNPP----- 155
+++ + RM G +PD ++ L+ C + +EA E L ++D G +PP
Sbjct: 145 DAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 204
Query: 156 --------------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A +++N M+K G +PD T+NS++ C SG+
Sbjct: 205 NTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 259
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-F 178
+ RT I++ A G+M EA++ S G P VR+ M +I+QGS+ +L+ F
Sbjct: 488 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLF 547
Query: 179 NSLIETICKS 188
S+ E C +
Sbjct: 548 LSMEENGCSA 557
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T ++I+ K+ L D A+ +F + Q +N + ++ R
Sbjct: 456 TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAH 515
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G VPD RT++++ G + E + + + G + R +V K++++G +
Sbjct: 516 SANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDI 575
Query: 173 PDLETFNSLIE 183
T+ +I+
Sbjct: 576 TRAGTYLFMID 586
>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------H 106
+ S P T +++ K G I++A +F++ C+ +YN L
Sbjct: 168 EGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEK 227
Query: 107 VC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------- 155
VC F M+ +G PD +++T++++ C+ G++ + + ++L+D G P
Sbjct: 228 VCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIH 287
Query: 156 -------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A + N M K+G P+L T+NSLI + K+G+
Sbjct: 288 GLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGK 329
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 57/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T LI++ GK I++ +++ + + + YN++ V+ +
Sbjct: 106 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 165
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------PVRSAK-- 160
+ +GF P T+ L++ G + +A+ E+ + G P R A
Sbjct: 166 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDT 225
Query: 161 ----QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
++ M++QG PD++++ +I+T+C G L GL D+ T +
Sbjct: 226 EKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLL 285
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
I + K ++EA L ++ + G + P+L G+ +A + E+ K
Sbjct: 286 IHGLGKSGRLEEALSLYNDMEKKG--IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAK 343
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 344 GWKPNVFTY 352
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----------------F 152
F M KG PDK T+ L++ C SG++ A E + E+ D G
Sbjct: 371 FNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCK 430
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
N V A +V K+ QG PD+ TFN LI +CK G L G + T
Sbjct: 431 NHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWT 490
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I + + KE + DEA LL + ++G
Sbjct: 491 YNIMVNGLCKEGLFDEAEALLSKMDDNG 518
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 49/206 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
II+ KH L+ +A E+++ +MI K PD T + L+
Sbjct: 214 IIDSLCKHKLVIDAYELYS----------------------QMIAKKISPDVVTFSALIY 251
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVP 173
+C G++ EA +E+ K NP ++ AK M+ M+K+G +P
Sbjct: 252 GFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMP 311
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
++ T++SL++ C L VN K + +S+ A C ++ F
Sbjct: 312 NVVTYSSLMDGYC------LVNQVNKAKHVLNTISQMGAAPNAHS-YCTMING----FCK 360
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ D+A F++MQ K P++ Y
Sbjct: 361 IKMVDEALSLFNDMQFKGIAPDKVTY 386
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 107 VCFVRMIR-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN- 164
+ V+ I+ +G PD T IL+ C G+++ AQ+ Q+L KG++ + MVN
Sbjct: 438 IALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNG 497
Query: 165 ---------------KMIKQGSVPDLETFNSLIETICKSGE 190
KM G +PD T+ +LI+ + E
Sbjct: 498 LCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDE 538
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++++ G+ PD T L+ C +GK++EA F + GF+ S ++N + K G
Sbjct: 128 KILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIG 187
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
ET +L G+L V N I I ++ K ++ +A+ L ++ K+
Sbjct: 188 -----ETRTALQMLRKIDGKLVKINVVMYNTI-IDSLCKHKLVIDAYELYSQMI--AKKI 239
Query: 231 FPS-------------LGQFDDAFCFFSEMQIKTHPPN 255
P +GQ ++AF F EM +K P+
Sbjct: 240 SPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPD 277
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 62/272 (22%)
Query: 28 DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF 87
DI RTL + T + + M ++LM + + +++I + K +D A+ VF
Sbjct: 340 DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399
Query: 88 NKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
+K V+ Y ++ + F +MI +G P+ +T L++ C+
Sbjct: 400 SKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTC 459
Query: 135 GKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQGSVPDLETF 178
K +A+E + E+ D+G FN + S ++++ + M++ G PD+ T+
Sbjct: 460 DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITY 519
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--------- 229
N+LI+ C +G++ DEA +LL ++V G K
Sbjct: 520 NTLIDGCCLAGKM----------------------DEATKLLASMVSVGVKPDIVTYGTL 557
Query: 230 --LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + + DDA F EM PN Y
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNIITY 589
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 66/236 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S II K +D A+EV N M++ G +PD T+
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNT----------------------MVKNGVMPDCMTYN 275
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------RS--AKQMVNKMIKQ 169
+++ +CSSG+ +EA L+++ G P V RS A+++ + M K+
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ T+ +L++ G L G+ D + I I A +K+ +D+A
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395
Query: 217 FRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + + H L P++ G DDA +F +M + PN VY
Sbjct: 396 MLVFSKMRQ--HGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVY 449
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 35/147 (23%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G PD T+ L++ C +GKM EA + L + G P + + ++N
Sbjct: 504 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 563
Query: 165 ------------KMIKQGSVPDLETFNSLIE----------------TICKSGELGLCAD 196
+M+ G P++ T+N +++ +I KSG +
Sbjct: 564 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ---LE 620
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNL 223
++T I + + K + DEA R+ NL
Sbjct: 621 LSTYNIILHGLCKNNLTDEALRMFQNL 647
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G PD ++ ++N + G +A E+ D+G P V + A
Sbjct: 196 GSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKA 255
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+++N M+K G +PD T+NS++ C SG+
Sbjct: 256 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 286
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET-F 178
+ RT I++ A G+M EA++ S G P VR+ M +I+QGS+ +L+ F
Sbjct: 655 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLF 714
Query: 179 NSLIETICKS 188
S+ E C +
Sbjct: 715 LSMEENGCSA 724
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T ++I+ K+ L D A+ +F + Q +N + ++ R
Sbjct: 623 TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAH 682
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G VPD RT++++ G + E + + + G + R +V K++++G +
Sbjct: 683 SANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDI 742
Query: 173 PDLETFNSLIE 183
T+ +I+
Sbjct: 743 TRAGTYLFMID 753
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 42/224 (18%)
Query: 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ ++ + P+ +++ F ++ AVEV ++ + C+ ++ L
Sbjct: 159 AVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCL 218
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+R F P+ R T L+ WC GK+ EA+ L ++ + GF
Sbjct: 219 LDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFE 278
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------ 191
P + R A ++ +M K P+ +F LI++ CK+ ++
Sbjct: 279 PDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRI 338
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G ADV T I K D+A+ +L ++++ GH
Sbjct: 339 FTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGH 382
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
+ +++I+ F K +D A+ +F + C+ V+ T+T
Sbjct: 318 SFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVV----------------------TYT 355
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQ 169
L++ +C G +A E L ++ KG +P + +++ +M K
Sbjct: 356 TLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKI 415
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G VPDL +N++I +CK G+L
Sbjct: 416 GCVPDLNIYNTMIRLVCKLGDL 437
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 58/254 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+ PD+ + P II G + A+ + + CQ V+ Y L VC
Sbjct: 141 VAPDAYTYTP-----IIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
M KG P+ T+ +++N C G++ +A+EFL LS GF P S
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+++ +M+++ +P+ TF+ L+ C+ G + G
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAF 241
A+ I I + K+ +D+AF+ L N+ G K +++DA
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375
Query: 242 CFFSEMQIKTHPPN 255
EM K PPN
Sbjct: 376 ELLKEMVRKNCPPN 389
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 40/190 (21%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV----------PDKRTHT 125
+ GLI+ A + + + C+ ++ YN+L F R P+ T+T
Sbjct: 402 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYT 461
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
L+ C++ ++ A E L E+ K P V + A ++V +M++
Sbjct: 462 TLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH 521
Query: 170 GSVPDLETFNSLIETI---CKSGEL----------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+L T+N+L++ I C S E G+ D+ T I +S+E ++EA
Sbjct: 522 GCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 581
Query: 217 FRLLCNLVED 226
++ ++V+D
Sbjct: 582 IKMF-HIVQD 590
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 84/217 (38%), Gaps = 39/217 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ +E M + +++I K G +D+A + N ++ C + Y ++
Sbjct: 306 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
R M+RK P++ T + C G + +A ++++S+ G +
Sbjct: 366 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 425
Query: 157 RSAKQMVNKMIKQGSV-------------PDLETFNSLIETICKSGELGLCAD------- 196
+ +VN QG V P+ T+ +L+ +C + L A+
Sbjct: 426 VTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQ 485
Query: 197 ------VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + + ++ ++DEA L+ ++E G
Sbjct: 486 KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 38/140 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++ F + G+++ A++V + + C L N
Sbjct: 287 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN---------------------- 324
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
I++N C G++ +A +FL + G +P S AK+++ +M+++
Sbjct: 325 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384
Query: 170 GSVPDLETFNSLIETICKSG 189
P+ TFN+ I +C+ G
Sbjct: 385 NCPPNEVTFNTFICILCQKG 404
>gi|125532572|gb|EAY79137.1| hypothetical protein OsI_34244 [Oryza sativa Indica Group]
Length = 508
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 54/249 (21%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+MW+ +E M L V +T L++ G+ GL VE F K + FN + +N+ L
Sbjct: 201 AMWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRLVERFIKSSNFNYRPFRNSFNAIL 260
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H +MI +G PD T+ +++ A GK+ + + L E+ G
Sbjct: 261 HTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLGKLNQFHKLLDEMGKNGLA 320
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P + + A ++N M G VP + F +LI+ + ++G L C
Sbjct: 321 PDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEAC--- 377
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCN-------LVEDGHKLFPSLGQFDDAFCFFSEMQIK 250
++ DE + C ++ G + + G+FD+A FF +M ++
Sbjct: 378 ------------KYFFDEMVKKGCQPDVVCYTVMITG---YVAAGEFDEAQKFFDDMLLR 422
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 423 GQLPNVYTY 431
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 32/155 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY------- 102
K ++ M + L+ T +L++ GK A+ + N + C VL +
Sbjct: 309 KLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGL 368
Query: 103 ---NSLHVC---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+L C F M++KG PD +T+++ + ++G+ EAQ+F +
Sbjct: 369 SRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDD---------- 418
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
M+ +G +P++ T+NS+I +C GE
Sbjct: 419 ---------MLLRGQLPNVYTYNSMICGLCIVGEF 444
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 58/254 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+ PD+ + P II G + A+ + + CQ V+ Y L VC
Sbjct: 141 VAPDAYTYTP-----IIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
M KG P+ T+ +++N C G++ +A+EFL LS GF P S
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+++ +M+++ +P+ TF+ L+ C+ G + G
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAF 241
A+ I I + K+ +D+AF+ L N+ G K +++DA
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375
Query: 242 CFFSEMQIKTHPPN 255
EM K PPN
Sbjct: 376 ELLKEMVRKNCPPN 389
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 40/190 (21%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV----------PDKRTHT 125
+ GLI+ A + + + C+ ++ YN+L F R P+ T+T
Sbjct: 402 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYT 461
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
L+ C++ ++ A E L E+ K P V + A ++V +M++
Sbjct: 462 TLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH 521
Query: 170 GSVPDLETFNSLIETI---CKSGEL----------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+L T+N+L++ I C S E G+ D+ T I +S+E ++EA
Sbjct: 522 GCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 581
Query: 217 FRLLCNLVED 226
++ ++V+D
Sbjct: 582 IKMF-HIVQD 590
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 84/217 (38%), Gaps = 39/217 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ +E M + +++I K G +D+A + N ++ C + Y ++
Sbjct: 306 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
R M+RK P++ T + C G + +A ++++S+ G +
Sbjct: 366 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 425
Query: 157 RSAKQMVNKMIKQGSV-------------PDLETFNSLIETICKSGELGLCAD------- 196
+ +VN QG V P+ T+ +L+ +C + L A+
Sbjct: 426 VTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQ 485
Query: 197 ------VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + + ++ ++DEA L+ ++E G
Sbjct: 486 KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 38/140 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++ F + G+++ A++V + + C L N
Sbjct: 287 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN---------------------- 324
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
I++N C G++ +A +FL + G +P S AK+++ +M+++
Sbjct: 325 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384
Query: 170 GSVPDLETFNSLIETICKSG 189
P+ TFN+ I +C+ G
Sbjct: 385 NCPPNEVTFNTFICILCQKG 404
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 29/142 (20%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KGFVPD+ T+ L+N C+ G + A E E KG P +
Sbjct: 322 KGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 381
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A Q++N+M ++G PD++T+N +I +CK G + G DV T I
Sbjct: 382 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 441
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
K +D A +L+ + E G
Sbjct: 442 GYCKRLKLDSALQLVERMWEYG 463
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 38/188 (20%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
I + + G + +AV+ F + F C YN++ H +VRM+ G
Sbjct: 60 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------------FNPPVRSAKQMVNK 165
PD THTI + ++C + + A L+ L +G + A+Q+ ++
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 179
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
M+ P+L FN ++ +CK G++ G+ ++ T I I + +
Sbjct: 180 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 239
Query: 213 IDEAFRLL 220
+ EA RL+
Sbjct: 240 LPEAVRLV 247
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 50/239 (20%)
Query: 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
IS+ ++ +MK VF T + +I+ + K +D+A+++ + + + Y
Sbjct: 414 ISDATVVMNDAIMKGYLPDVF--TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITY 471
Query: 103 NSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
NS+ +C F MI KG P+ T+ IL+ +C S KM EA + + ++S
Sbjct: 472 NSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 531
Query: 150 KGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-- 191
+G +P S A + K+ ++G +TFN+LI SG+L
Sbjct: 532 EGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF--SGKLNM 589
Query: 192 -------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
G AD T ++ I K +D A+ L +++ G PS+ F
Sbjct: 590 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG--FIPSMSTF 646
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 29/151 (19%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFV 110
P T +++IE F + ++ A +V K + + +N+L ++ F
Sbjct: 503 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 562
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
++ KG+ T L+ A+ M A++ E+ KG + + +++
Sbjct: 563 KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTA 622
Query: 165 ----------KMIKQGSVPDLETFNSLIETI 185
+MIK+G +P + TF +I ++
Sbjct: 623 NVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 653
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------H 106
+ S P T +++ K G I++A +F++ C+ +YN L
Sbjct: 865 EGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEK 924
Query: 107 VC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------- 155
VC F M+ +G PD +++T++++ C+ G++ + + ++L+D G P
Sbjct: 925 VCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIH 984
Query: 156 -------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A + N M K+G P+L T+NSLI + K+G+
Sbjct: 985 GLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGK 1026
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 46/222 (20%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
L K ELMK S + P ++ ++ K G + A VF++ A + Y
Sbjct: 433 LKALKRYELMK--SKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYT 490
Query: 104 SLHVC-------------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+ C F MI PD L++ +G+ EA + EL +
Sbjct: 491 MMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM 550
Query: 151 GFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--- 191
P V+ Q++ M P++ T+N++++ +CK+GE+
Sbjct: 551 NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYA 610
Query: 192 ----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
G D+++ + + KE +DEAF + C +
Sbjct: 611 LDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQM 652
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 36/222 (16%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNK-------------CTAFNCQQCVLLYNSLHVCFVR 111
++ + ++E HG + + +VF+ CT F S V
Sbjct: 102 ESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPV 161
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G V + T+ L+ SG REA + + ++ G P VR+ + M+ G
Sbjct: 162 MKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVL---MLAFGK 218
Query: 172 VPDLETFNSLIETICKSGEL---GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
D ET L+ GE+ G+ +V + I I + + ++EA+R+L + E+G
Sbjct: 219 RRDAETVVGLL------GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGC 272
Query: 229 K-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K + G+ DA F +M+ P+R Y
Sbjct: 273 KPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTY 314
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 44/223 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T LI++ GK I++ +++ + + + YN++ V+ +
Sbjct: 803 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +GF P T+ L++ G + +A+ E+ + G P
Sbjct: 863 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDT 922
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
++ M++QG PD++++ +I+T+C G L GL D+ T +
Sbjct: 923 EKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLL 982
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
I + K ++EA L ++ + G + P+L ++ + +
Sbjct: 983 IHGLGKSGRLEEALSLYNDMEKKG--IAPNLYTYNSLILYLGK 1023
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR-------------KGFVPDKRTH 124
G +D A++VF++ YNSL F++ R G P+ TH
Sbjct: 360 GRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTH 419
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE-TFNSLIE 183
+ +N SG+ +A + + + KG P V + ++ + K G + + F+ L
Sbjct: 420 VLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHEL-- 477
Query: 184 TICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+G+ D T + I SK DEA ++ ++E+
Sbjct: 478 -----KAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIEN 515
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 42/224 (18%)
Query: 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ ++ + P+ +++ F ++ AVEV ++ + C+ ++ L
Sbjct: 182 AVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCL 241
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+R F P+ R T L+ WC GK+ EA+ L ++ + GF
Sbjct: 242 LDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFE 301
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------ 191
P + R A ++ +M K P+ +F LI++ CK+ ++
Sbjct: 302 PDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRI 361
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G ADV T I K D+A+ +L ++++ GH
Sbjct: 362 FTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGH 405
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
+ +++I+ F K +D A+ +F + C+ V+ T+T
Sbjct: 341 SFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVV----------------------TYT 378
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQ 169
L++ +C G +A E L ++ KG +P + +++ +M K
Sbjct: 379 TLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKI 438
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G VPDL +N++I +CK G+L
Sbjct: 439 GCVPDLNIYNTMIRLVCKLGDL 460
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 34/228 (14%)
Query: 48 MWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWK I+ M + + V P LS ++ G ++ A+ +F + CQ YNS+
Sbjct: 1132 MWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMI 1191
Query: 106 ------------HVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M +G PD T++ L++A+C G+ A + L E+ + G
Sbjct: 1192 IMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGM 1251
Query: 153 NPPVRSAKQMVNKMIK-QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
P + ++ K + L F + C+ DV T I + K
Sbjct: 1252 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCR-------PDVFTYTELIRGLGKAG 1304
Query: 212 MIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQ 248
IDEA+ C + +G + G+ DDA F EM+
Sbjct: 1305 RIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEME 1352
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 45/202 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVRMIRK 115
+I GK G +D+A+++F + C V+ YN++ F RM
Sbjct: 1331 MINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKES 1390
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G P T++IL++ +C + +M +A L+E+ +KGF PP +A + + + DL
Sbjct: 1391 GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF-PPCPAAYCSLIDALGKAKRYDL 1449
Query: 176 --ETFNSL---------------IETICKSG-------------ELGLCADVNTNKISIP 205
E F L I+ + K+G +LG DV +
Sbjct: 1450 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMS 1509
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
+++ M+DEA + + E G
Sbjct: 1510 GLARTGMLDEALSTMRRMQEHG 1531
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 29/152 (19%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------R 111
+ +++I+ GK G +D+A+ +F++ C V YN+L R
Sbjct: 1467 RVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRR 1526
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M G +PD ++ I++N +G A E L + P V S
Sbjct: 1527 MQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGM 1586
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +++ +M G DL T++S++E I K
Sbjct: 1587 FEEASKLMKEMNTLGFEYDLITYSSILEAIGK 1618
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 85/225 (37%), Gaps = 51/225 (22%)
Query: 63 FPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
FP T+ S +I F K G D+A+++ N+ Q +Y L F +
Sbjct: 1217 FPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALS 1276
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
M + PD T+T L+ +G++ EA F E+ +G P M+N +
Sbjct: 1277 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLG 1336
Query: 168 KQGS----------------VPDLETFNSLIETICKS--------------GELGLCADV 197
K G +P + T+N++I+ + +S E G+
Sbjct: 1337 KAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 1396
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
T I I K +++A LL + E G P+ A+C
Sbjct: 1397 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPA------AYC 1435
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 48/227 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ S +I F + G +D+A + ++Y + F R M
Sbjct: 299 SFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEM 358
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ G +PD T+ L+N C ++ +A++ L E+ ++G P +
Sbjct: 359 VGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNF 418
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKEFM 212
+A Q+ + +++Q PD+ T+NSLI+ +C+ G+L L D++ +I ++ +
Sbjct: 419 ENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSIL 478
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
ID C GQ +DAF F EM K + PN Y
Sbjct: 479 IDSH----C-----------EKGQVEDAFGFLDEMVKKGNLPNIRTY 510
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG--------- 116
T + +I + + G +NA+++F+ + V+ YNSL M RKG
Sbjct: 404 TFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSL---IDGMCRKGDLAKANELW 460
Query: 117 -------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
+P+ T++IL+++ C G++ +A FL E M+K+
Sbjct: 461 DDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDE-------------------MVKK 501
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G++P++ T+NS+I+ C+SG +
Sbjct: 502 GNLPNIRTYNSIIKGYCRSGNV 523
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M++KG +P+ RT+ ++ +C SG +++ Q+FLQ KM +
Sbjct: 498 MVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQ-------------------KMRQDNV 538
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
PDL TFN+LI K E + N I + KE + +A + N++ +G F
Sbjct: 539 FPDLITFNTLIHGYIK--EENMHGAFNVFNI----MEKEMVRPDA--VTYNMIING---F 587
Query: 232 PSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G DA F M P+R Y
Sbjct: 588 SEQGNMQDAGRVFKGMGDSGIEPDRYTY 615
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 51/232 (21%)
Query: 47 SMWKTIELMKPDSL-------SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
S KT+E D++ VFP T +++I+ + G +D A+ + + +
Sbjct: 166 SYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKP 225
Query: 98 CVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
++ YNS+ +C F M + PD R+ IL+ +C G+++EA +F
Sbjct: 226 GIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFY 285
Query: 145 QELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+E+ + P V S A + +M G VPD + +I C++
Sbjct: 286 KEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRA 345
Query: 189 GEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G + G DV T + + K+ + +A +LL + E G
Sbjct: 346 GSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERG 397
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 58/254 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+ PD+ + P II G + A+ + + CQ V+ Y L VC
Sbjct: 172 VAPDAYTYTP-----IIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 226
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
M KG P+ T+ +++N C G++ +A+EFL LS GF P S
Sbjct: 227 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 286
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+++ +M+++ +P+ TF+ L+ C+ G + G
Sbjct: 287 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 346
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAF 241
A+ I I + K+ +D+AF+ L N+ G K +++DA
Sbjct: 347 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 406
Query: 242 CFFSEMQIKTHPPN 255
EM K PPN
Sbjct: 407 ELLKEMVRKNCPPN 420
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 40/190 (21%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV----------PDKRTHT 125
+ GLI+ A + + + C+ ++ YN+L F R P+ T+T
Sbjct: 433 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYT 492
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
L+ C++ ++ A E L E+ K P V + A ++V +M++
Sbjct: 493 TLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEH 552
Query: 170 GSVPDLETFNSLIETI---CKSGEL----------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+L T+N+L++ I C S E G+ D+ T I +S+E ++EA
Sbjct: 553 GCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 612
Query: 217 FRLLCNLVED 226
++ ++V+D
Sbjct: 613 IKMF-HIVQD 621
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 84/217 (38%), Gaps = 39/217 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ +E M + +++I K G +D+A + N ++ C + Y ++
Sbjct: 337 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 396
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
R M+RK P++ T + C G + +A ++++S+ G +
Sbjct: 397 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 456
Query: 157 RSAKQMVNKMIKQGSV-------------PDLETFNSLIETICKSGELGLCAD------- 196
+ +VN QG V P+ T+ +L+ +C + L A+
Sbjct: 457 VTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQ 516
Query: 197 ------VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + + ++ ++DEA L+ ++E G
Sbjct: 517 KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 553
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 38/140 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++ F + G+++ A++V + + C L N
Sbjct: 318 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCN---------------------- 355
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
I++N C G++ +A +FL + G +P S AK+++ +M+++
Sbjct: 356 IVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 415
Query: 170 GSVPDLETFNSLIETICKSG 189
P+ TFN+ I +C+ G
Sbjct: 416 NCPPNEVTFNTFICILCQKG 435
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 111/268 (41%), Gaps = 57/268 (21%)
Query: 45 ELSMWKTIEL----MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL 100
++ M++ I+L MK LSV Q + II+ K G A + + + C+ ++
Sbjct: 290 KMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLV 349
Query: 101 LYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
YN+L H C + IR+G P+K T+T LV+ +C G+ +A ++L E+
Sbjct: 350 TYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEM 409
Query: 148 SDKGFN----------------PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
S G V +A + ++M+ +G +PD +N L+ + K G+L
Sbjct: 410 STSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKL 469
Query: 192 GLCADVNTNKISIPAVSKEFM-------------IDEAFRLLCNLVEDGH---------- 228
+ + T + F+ +DEA +L ++E G
Sbjct: 470 SMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVM 529
Query: 229 -KLFPSLGQFDDAFCFFSEMQIKTHPPN 255
K F G D+A +M+ H P+
Sbjct: 530 IKGFSKSGMMDNAILCIDKMRRAHHVPD 557
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 29/163 (17%)
Query: 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------ 105
D + V T S++++ G I++ +++ C ++ YN+L
Sbjct: 202 DDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVES 261
Query: 106 -HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR------- 157
+ F ++ KGF+P +T LVN +C G L E+ D+G + V+
Sbjct: 262 AYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIID 321
Query: 158 ---------SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
AK + +M + PDL T+N+LI C GE+
Sbjct: 322 ARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEV 364
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 34/173 (19%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-----CQQCVLLYNSL 105
T+E MK + LS ++ + GL+D A+EV++ + C L N L
Sbjct: 120 TLEEMKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVKLHNSLPSTYACNSLLNLL 179
Query: 106 ---------HVCFVRMIRK----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + MI + D T +I+V C G++ + + ++ KG
Sbjct: 180 VKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGC 239
Query: 153 NP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
P V SA ++ K+ +G +P L+TF SL+ CK G
Sbjct: 240 VPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMG 292
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 32/138 (23%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIR 114
+++I+ F K G++DNA+ +K + + ++++ +V+ M++
Sbjct: 527 NVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVK 586
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+ P+ T+T L+N +C G+ + A++ + G P V
Sbjct: 587 QNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVV----------------- 629
Query: 175 LETFNSLIETICKSGELG 192
T++ LI + CK +LG
Sbjct: 630 --TYSILIGSFCKEAKLG 645
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------H 106
+ S P T +++ K G I++A +F++ C+ +YN L
Sbjct: 865 EGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEK 924
Query: 107 VC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------- 155
VC F M+ +G PD +++T++++ C+ G++ + + ++L+D G P
Sbjct: 925 VCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIH 984
Query: 156 -------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A + N M K+G P+L T+NSLI + K+G+
Sbjct: 985 GLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGK 1026
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 46/222 (20%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
L K ELMK S + P ++ ++ K G + A VF++ A + Y
Sbjct: 433 LKALKRYELMK--SKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYT 490
Query: 104 SLHVC-------------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+ C F MI PD L++ +G+ EA + EL +
Sbjct: 491 MMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEM 550
Query: 151 GFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--- 191
P V+ Q++ M P++ T+N++++ +CK+GE+
Sbjct: 551 NLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYA 610
Query: 192 ----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
G D+++ + + KE +DEAF + C +
Sbjct: 611 LDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQM 652
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 88/222 (39%), Gaps = 36/222 (16%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNK-------------CTAFNCQQCVLLYNSLHVCFVR 111
++ + ++E HG + + +VF+ CT F S V
Sbjct: 102 ESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPV 161
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G V + T+ L+ SG REA + + ++ G P VR+ + M+ G
Sbjct: 162 MKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVL---MLAFGK 218
Query: 172 VPDLETFNSLIETICKSGEL---GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
D ET L+ GE+ G+ +V + I I + + ++EA+R+L + E+G
Sbjct: 219 RRDAETVVGLL------GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGC 272
Query: 229 K-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K + G+ DA F +M+ P+R Y
Sbjct: 273 KPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTY 314
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 44/223 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T LI++ GK I++ +++ + + + YN++ V+ +
Sbjct: 803 TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +GF P T+ L++ G + +A+ E+ + G P
Sbjct: 863 MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDT 922
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
++ M++QG PD++++ +I+T+C G L GL D+ T +
Sbjct: 923 EKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLL 982
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
I + K ++EA L ++ + G + P+L ++ + +
Sbjct: 983 IHGLGKSGRLEEALSLYNDMEKKG--IAPNLYTYNSLILYLGK 1023
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR-------------KGFVPDKRTH 124
G +D A++VF++ YNSL F++ R G P+ TH
Sbjct: 360 GRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTH 419
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE-TFNSLIE 183
+ +N SG+ +A + + + KG P V + ++ + K G + + F+ L
Sbjct: 420 VLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHEL-- 477
Query: 184 TICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+G+ D T + I SK DEA ++ ++E+
Sbjct: 478 -----KAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIEN 515
>gi|110289270|gb|ABG66143.1| expressed protein [Oryza sativa Japonica Group]
gi|125575153|gb|EAZ16437.1| hypothetical protein OsJ_31906 [Oryza sativa Japonica Group]
Length = 829
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 32/178 (17%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVC---------FVRMIRKGFVPDKRT 123
+ + ++ +A+ V +K ++ N Q V Y+SL H F M G P + +
Sbjct: 179 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMTDVALELFEEMESCGVSPSEYS 238
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKG-FNPP----------------VRSAKQMVNKM 166
H+I++N C K+ EA FLQE +G F P V+SAK + M
Sbjct: 239 HSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSAKSFLCLM 298
Query: 167 IKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+K G VPD TF++LI +CK G L L V + + V+ +I+ +RLL
Sbjct: 299 LKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLIN-GYRLL 355
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
M++ G VPD+ T + L++ C G M EA + + ++ +G + + ++N
Sbjct: 298 MLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGL 357
Query: 166 ----------MIKQGSVPDLETFNSLIETICKSGEL 191
M QG PDL T+ LI C+SG++
Sbjct: 358 TKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDV 393
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S+I++ K D A+ V + + YN+L F M
Sbjct: 625 TYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIM 684
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN---------PPVRSAKQM- 162
+ +G VP T+ +L+N C GK+ +A+ L+ L + G + AK M
Sbjct: 685 LCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMP 744
Query: 163 ------VNKMIKQGSVPDLETFNSLIETICK 187
V K++ G +E F++ I +CK
Sbjct: 745 INAVLLVGKLLDAGFEASIEDFSAAINRLCK 775
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 53/238 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+KPD +S S +I F + G +D+A+ + F ++Y + F R
Sbjct: 292 IKPDLVS-----FSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGL 346
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
M+ G +PD T+ L+N C ++ +A+ L E+ ++G P
Sbjct: 347 MSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT 406
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNK 201
+ A Q+ + M+ Q PD+ T+N+LI+ +C+ G+L L D+++ +
Sbjct: 407 LIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE 466
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
I V+ +ID C GQ +DAF F EM K PN Y
Sbjct: 467 IFPNHVTYSILIDSH----C-----------EKGQVEDAFGFLDEMINKGILPNIMTY 509
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 60/233 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I + G +D A+++F+ + ++ YN+L R M
Sbjct: 403 TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 462
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ P+ T++IL+++ C G++ +A FL E MI +G +
Sbjct: 463 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDE-------------------MINKGIL 503
Query: 173 PDLETFNSLIETICKSGELG-------------LCADVNTNKISIPAVSKEFMIDEAFRL 219
P++ T+NS+I+ C+SG + + D+ T I KE + +AF+L
Sbjct: 504 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 563
Query: 220 LCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
L N++E K+ P + G +A F +M K P+R Y
Sbjct: 564 L-NMMEK-EKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 614
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 50/200 (25%)
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
+ V N C A L ++ + M ++ PD TH ++V+A +G
Sbjct: 161 IMVHNYCKA-------LEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGD------- 206
Query: 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------E 190
+A +V+ M+ +G P + T+NS+++ +C+SG +
Sbjct: 207 ------------AEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDD 254
Query: 191 LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDD 239
G+ DV + I I + I+EA ++ + G K LF G+ D
Sbjct: 255 FGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDH 314
Query: 240 AFCFFSEMQIKTHPPNRPVY 259
A + EM+ P+ +Y
Sbjct: 315 AMAYLREMRCFGLVPDGVIY 334
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +++ + G+ D A EVF + F G PD R+ T
Sbjct: 228 TYNSVLKGLCRSGMWDKAWEVFKEMDDF----------------------GVAPDVRSFT 265
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS-------------- 171
IL+ +C G++ EA + +E+ +G P + S ++ ++G
Sbjct: 266 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCF 325
Query: 172 --VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
VPD + +I C++G + G DV T + + KE + +A
Sbjct: 326 GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 385
Query: 217 FRLLCNLVEDG 227
LL + E G
Sbjct: 386 EGLLNEMRERG 396
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 34 TLNRLNLTLISELSM---WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N L I E M +K + +M+ + + T +++I F HG + A +F K
Sbjct: 543 TYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK- 601
Query: 91 TAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
M KG PD+ T+ ++N ++G +EA + E+ +
Sbjct: 602 ---------------------MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 640
Query: 151 GFNP 154
GF P
Sbjct: 641 GFAP 644
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 58/253 (22%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
+PD++ T +IE G+HG +D A +++ + N ++Y SL
Sbjct: 476 RPDAV-----TYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRK 530
Query: 106 ---HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
H + M+R G PD ++ +G++ + + QE+ + GF P RS +
Sbjct: 531 EDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTIL 590
Query: 163 VNKMIK----------------QGSVPDLETFNSLIETICKSGEL-------------GL 193
++ ++K QG V D +N++I+ CKSG++ G
Sbjct: 591 IHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH 650
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFC 242
V T I ++K +DEA+ L G +L F +G+ D+A+
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710
Query: 243 FFSEMQIKTHPPN 255
E+ K PN
Sbjct: 711 IMEELMQKGLTPN 723
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 19/166 (11%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRMIR 114
S +I+ FGK G ID A + + V +N L VCF M
Sbjct: 693 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKD 752
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
P+ T++IL++ C K +A F QE+ +GF P V + M++ + K G++ +
Sbjct: 753 LKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE 812
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+T L E K E G AD I +S +A+RL
Sbjct: 813 ADT---LFE---KFKEKGGVADSAIYNAIIEGLSNANRASDAYRLF 852
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 34/197 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM------------IRKGF 117
+I +G G ++A + + C V+ YN + C R ++K
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA 405
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----- 172
+P+ T+ I+++ C +GK+ A + D G P V + MV+++ K +
Sbjct: 406 IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACS 465
Query: 173 -----------PDLETFNSLIETICKSGELGLCADVNTNKI---SIP-AVSKEFMIDEAF 217
PD T+ SLIE + + G + + + IP AV +I F
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525
Query: 218 RLLCNLVEDGHKLFPSL 234
+ C EDGHK++ +
Sbjct: 526 K--CGRKEDGHKIYNEM 540
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 107/264 (40%), Gaps = 60/264 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC- 108
++ MK +SL ++ I+ FGK G +D A + F++ A + Y S+ +C
Sbjct: 258 LDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCK 317
Query: 109 ----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
F M + VP + ++ + +GK +A L+ KG P V S
Sbjct: 318 ADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVS 377
Query: 159 AKQMVNKMIKQG---------------SVPDLETFNSLIETICKSGEL------------ 191
+++ + ++G ++P+L T+N +I+ +CK+G+L
Sbjct: 378 YNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKD 437
Query: 192 -GLCADVNTNKISIPAVSKEFMIDEAFRLL---------------CNLVEDGHKLFPSLG 235
GL +V T I + + K +D+A + C+L+E G
Sbjct: 438 AGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG----LGRHG 493
Query: 236 QFDDAFCFFSEMQIKTHPPNRPVY 259
+ D+A+ + +M PN VY
Sbjct: 494 RVDEAYKLYEQMLDANQIPNAVVY 517
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 17/158 (10%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+N L M GF P T +V ++ S K+REA F+Q + F P +
Sbjct: 146 FNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTN 205
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++ G++ + ++ + ELG +V+ I ++E +D A LL
Sbjct: 206 LI------GALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLD 259
Query: 222 NLVEDGHK-----------LFPSLGQFDDAFCFFSEMQ 248
+ + + F G+ D A+ FF EM+
Sbjct: 260 EMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMK 297
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 21/176 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVR 111
T +++I+ GK G ID A+ +F + N ++ Y SL +C +
Sbjct: 305 TFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC-KK 363
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +G PD ++TIL++A C G++ A++F Q L KG++ VR+ M+N + K G
Sbjct: 364 MKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGL 423
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
D+ S +E G+ G D T K I A+ ++ D+A + L ++ G
Sbjct: 424 FGDVMDLKSKME-----GK-GCMPDAITFKTIICALFEKDENDKAEKFLREMIARG 473
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 35/171 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ MI KG P+ T+ L+ +C G ++EA L E+ K NP V + +++ + K
Sbjct: 256 YSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGK 315
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVS 208
+G + P++ T+ SLI+ +CK+ L LC + I S
Sbjct: 316 EGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYS 375
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++D LC G+ ++A FF + +K + N Y
Sbjct: 376 YTILLDA----LC-----------KGGRLENAKQFFQHLLVKGYHLNVRTY 411
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 42/193 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F ++++G+ PD T L+ C G+++ A F ++ +GF S ++N + K
Sbjct: 151 FANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCK 210
Query: 169 QGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
G PD+ + ++I +CK+ +G D+ + I + +S
Sbjct: 211 AGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMI-VKGISPNVF 269
Query: 213 --------------IDEAFRLLCNL--------VEDGHKLFPSLGQ---FDDAFCFFSEM 247
+ EAF LL + V + L +LG+ D+A F EM
Sbjct: 270 TYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEM 329
Query: 248 QIKTHPPNRPVYA 260
+ K PN Y
Sbjct: 330 KHKNMFPNIVTYT 342
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 58/253 (22%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
+PD++ T +IE G+HG +D A +++ + N ++Y SL
Sbjct: 476 RPDAV-----TYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRK 530
Query: 106 ---HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
H + M+R G PD ++ +G++ + + QE+ + GF P RS +
Sbjct: 531 EDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTIL 590
Query: 163 VNKMIK----------------QGSVPDLETFNSLIETICKSGEL-------------GL 193
++ ++K QG V D +N++I+ CKSG++ G
Sbjct: 591 IHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH 650
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFC 242
V T I ++K +DEA+ L G +L F +G+ D+A+
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710
Query: 243 FFSEMQIKTHPPN 255
E+ K PN
Sbjct: 711 IMEELMQKGLTPN 723
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 97/252 (38%), Gaps = 65/252 (25%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
WK MK + L + T + +I K ++ AVE+F C YN++
Sbjct: 290 WKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG 349
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+ R RKG +P ++ +++ G++ EA + +E+
Sbjct: 350 YGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-------- 401
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
K+ ++P+L T+N +I+ +CK+G+L GL +V T I
Sbjct: 402 ------------KKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNI 449
Query: 203 SIPAVSKEFMIDEAFRLL---------------CNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+ + K +D+A + C+L+E G+ D+A+ + +M
Sbjct: 450 MVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEG----LGRHGRVDEAYKLYEQM 505
Query: 248 QIKTHPPNRPVY 259
PN VY
Sbjct: 506 LDANQIPNAVVY 517
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 19/166 (11%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRMIR 114
S +I+ FGK G ID A + + V +N L VCF M
Sbjct: 693 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKD 752
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
P+ T++IL++ C K +A F QE+ +GF P V + M++ + K G++ +
Sbjct: 753 LKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVE 812
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+T L E K E G AD I +S +A+RL
Sbjct: 813 ADT---LFE---KFKEKGGVADSAIYNAIIEGLSNANRASDAYRLF 852
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 34/197 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM------------IRKGF 117
+I +G G ++A + + C V+ YN + C R ++K
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA 405
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----- 172
+P+ T+ I+++ C +GK+ A + D G P V + MV+++ K +
Sbjct: 406 IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACS 465
Query: 173 -----------PDLETFNSLIETICKSGELGLCADVNTNKI---SIP-AVSKEFMIDEAF 217
PD T+ SLIE + + G + + + IP AV +I F
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525
Query: 218 RLLCNLVEDGHKLFPSL 234
+ C EDGHK++ +
Sbjct: 526 K--CGRKEDGHKIYNEM 540
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 57/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
+ + +I F G +D A +F + Q V+ Y ++ +C F +M
Sbjct: 205 SYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQM 264
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
I KG PD T+ L++ + S GK +E L+E+S G P
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC 324
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
R A+ + MI++G P++ + LI G L GL D + I
Sbjct: 325 REARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIK 250
A +K+ MIDEA + + + G L P LG+ DDA F++M +
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQG--LSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNE 442
Query: 251 THPPNRPVY 259
PN V+
Sbjct: 443 GVAPNIFVF 451
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 93/253 (36%), Gaps = 62/253 (24%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
M + LM + LS ++I + K +ID A+ +FNK
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNK------------------ 403
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------- 156
M ++G PD L++A C G++ +A ++ ++G P +
Sbjct: 404 ----MKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLC 459
Query: 157 -----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVN 198
AK+ +M+ QG PD+ FN+++ +C G+ +G DV
Sbjct: 460 TVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVI 519
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEM 247
+ I IDEA + L ++ G K + G+ DDA+ F EM
Sbjct: 520 SYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREM 579
Query: 248 QIKTHPPNRPVYA 260
P Y+
Sbjct: 580 LRNGITPGVVTYS 592
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 56/192 (29%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ G PD+ T+ L++ +C +G++ +A +E+ G P V +
Sbjct: 544 MLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRR 603
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------GLCA-----DVNTNKI 202
AK++ MI G ++ +N ++ + K+ + LC+ ++ T I
Sbjct: 604 FSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNI 663
Query: 203 SIPAVSKEFMIDEAFRLLC-------------------NLVEDGHKLFPSLGQFDDAFCF 243
I A+ K ++A L NL+E+G+ L +FDD
Sbjct: 664 MIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGY-----LEEFDD---L 715
Query: 244 FSEMQIKTHPPN 255
FS M+ PN
Sbjct: 716 FSAMEKSGTTPN 727
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 107/274 (39%), Gaps = 42/274 (15%)
Query: 17 AVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQ--TLSLIIEEF 74
A NH+ V R R + T SEL + +++ ++ V P T S++I F
Sbjct: 51 AFNHLLTAV------SRVSGRRSSTTESELVVSLFNRMIRECTIKVTPDLCTYSILIGCF 104
Query: 75 GKHGLIDNAVEVFNKC--TAFNCQQCVL------------LYNSLHVCFVRMIRKGFVPD 120
+ G +++ F + + V+ L ++ + RM G PD
Sbjct: 105 CRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPD 164
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSD---KGFNPPVRSAKQMVNKMIKQGSVPDLET 177
++ L+ +C+ + EA E L ++D + P V S ++N +G V +
Sbjct: 165 VVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVD--KA 222
Query: 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-------- 229
+N +E + + G+ +V T I + K ++D A + +++ G K
Sbjct: 223 YNLFLEMM----DRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNC 278
Query: 230 ---LFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ S+G++ + EM P+ Y
Sbjct: 279 LIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYG 312
>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
salt-inducible-like protein from Arabidopsis thaliana
BAC gb|AL021637 [Arabidopsis thaliana]
gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 780
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 54/265 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W+T+E +K +SV ++I + K G+ + AVE F + F+C+ V YN +
Sbjct: 112 WQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRV 171
Query: 109 FVR--------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+R M++ P+ T IL++ G+ +AQ+ +++ +G +P
Sbjct: 172 MMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------- 191
A+++ +M G+ PD N+L++ CK G +
Sbjct: 232 NRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELL 291
Query: 192 ------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL------- 234
G + I + + +AF L N+++ K L+ L
Sbjct: 292 RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKA 351
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ +DA S M K P+ Y
Sbjct: 352 GKIEDALKLLSSMPSKGISPDTYCY 376
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 37/150 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRM 112
+KPD + +++I+ K G I++A+++ + + YN++ +C +
Sbjct: 334 IKPDII-----LYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGL 388
Query: 113 IRKG-----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ +G PD THTIL+ + C +G +REA+E E+
Sbjct: 389 LEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIE------------- 435
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL 191
K G P + TFN+LI+ +CKSGEL
Sbjct: 436 ------KSGCSPSVATFNALIDGLCKSGEL 459
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 71/255 (27%)
Query: 24 IVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLS-----------LIIE 72
+VR ER +L +IS L +EL K VF LS +I
Sbjct: 177 LVREGRKNER--GKLASAMISTLGRLGKVELAK----GVFETALSEGYGNTVFAFSALIS 230
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC-------------FVRMIRKGFV 118
+GK G D A++VF + ++ YN+ + C F M+R G
Sbjct: 231 AYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQ 290
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
PD+ T+ L+ A CS G + EA A+ + N+MI +G D+ T+
Sbjct: 291 PDRITYNSLL-AVCSRGGLWEA------------------ARNLFNEMIDRGIDQDVFTY 331
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV-----EDGHKLFPS 233
N+L++ +CK G++ L ++ + +P ++L N+V DG +
Sbjct: 332 NTLLDAVCKGGQMDLAYEI---MLEMPGK----------KILPNVVTYSTMADG---YAK 375
Query: 234 LGQFDDAFCFFSEMQ 248
G+ +DA ++EM+
Sbjct: 376 AGRLEDALNLYNEMK 390
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 29/144 (20%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPD 120
+ K G ++A++V + + ++ V+ YN+L F M + P+
Sbjct: 408 YAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPN 467
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVN 164
T++ L++ + EA E +E G N V SA +++
Sbjct: 468 LLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLD 527
Query: 165 KMIKQGSVPDLETFNSLIETICKS 188
+M K+G P++ T+NS+I+ +S
Sbjct: 528 EMTKEGIRPNVVTYNSIIDAFGRS 551
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T S + + + K G +++A+ ++N+ + YN+L + ++ R
Sbjct: 365 TYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEM 424
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G D T+ L++ + GK E +E+ P + + +++ + +GS+
Sbjct: 425 GSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLID-VYSKGSL 483
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ +E + + GL ADV I A+ K ++D A LL + ++G
Sbjct: 484 -----YEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEG 533
>gi|10140738|gb|AAG13570.1|AC037425_1 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 811
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 32/178 (17%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVC---------FVRMIRKGFVPDKRT 123
+ + ++ +A+ V +K ++ N Q V Y+SL H F M G P + +
Sbjct: 161 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMTDVALELFEEMESCGVSPSEYS 220
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKG-FNPP----------------VRSAKQMVNKM 166
H+I++N C K+ EA FLQE +G F P V+SAK + M
Sbjct: 221 HSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSAKSFLCLM 280
Query: 167 IKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+K G VPD TF++LI +CK G L L V + + V+ +I+ +RLL
Sbjct: 281 LKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLIN-GYRLL 337
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
M++ G VPD+ T + L++ C G M EA + + ++ +G + + ++N
Sbjct: 280 MLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGL 339
Query: 166 ----------MIKQGSVPDLETFNSLIETICKSGEL 191
M QG PDL T+ LI C+SG++
Sbjct: 340 TKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDV 375
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S+I++ K D A+ V + + YN+L F M
Sbjct: 607 TYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIM 666
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN---------PPVRSAKQM- 162
+ +G VP T+ +L+N C GK+ +A+ L+ L + G + AK M
Sbjct: 667 LCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMP 726
Query: 163 ------VNKMIKQGSVPDLETFNSLIETICK 187
V K++ G +E F++ I +CK
Sbjct: 727 INAVLLVGKLLDAGFEASIEDFSAAINRLCK 757
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 14 YFAAVNHIANIVRHDIYAERTL-NRLNLTLISELSMWKTI-ELMKPDSLSVFPQTLSLII 71
+F+A+ + +N +H R + RL E+ M + I + MK D ++ II
Sbjct: 60 FFSAIAN-SNAFQHTASTYRVMIERLGRE--CEMDMVQYILQQMKMDGINCCEDLFICII 116
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFV 118
+ + G + A+++F + F C+ V +YN L + + M + G +
Sbjct: 117 NGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLI 176
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
P+ T+ IL+ A C + ++ A + E+S+KG P + MV+ + K G +
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Query: 173 -----PDLETFNSLIETICKSGEL 191
P + +N+LI+ +CK G +
Sbjct: 237 AGRFKPSVPVYNALIDGMCKEGRI 260
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-- 158
LY +L + + MI+ G P+ + L++ CS+G + EA + ++ G P V +
Sbjct: 330 LYEALDL-WKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYS 388
Query: 159 --------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------- 191
A + N+MI G P++ T+ +++ +CK+
Sbjct: 389 ILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLE 448
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFD 238
G + T I + ++ A +LL + GH P+ + +++
Sbjct: 449 GCTPNTMTFNTFIKGLCGNGRVEWAMKLLERM--QGHGCLPNITTYNELLDALFRMNKYE 506
Query: 239 DAFCFFSEMQIKTHPPNRPVY 259
+AF F E++ + PN Y
Sbjct: 507 EAFGLFQEIEARNLQPNLVTY 527
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +++ K+ + D A + K T C + +N+ +C RM
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERM 480
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
G +P+ T+ L++A K EA QE+ + P + +
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A Q+ K + +G+ PD T+N++I CK G++ + A +
Sbjct: 541 GEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQL 581
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKGFVPDKRTHTIL 127
+ A +F + A N Q ++ YN++ F R + +G PD T+ +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565
Query: 128 VNAWCSSGKMREAQEFLQELSD-KGFNPP----------------VRSAKQMVNKMIKQG 170
++A+C GK++ A + ++ +S K ++P + A ++K I QG
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQG 625
Query: 171 SVPDLETFNSLIETICKS-GELG 192
P+ T+N+L+ S G +G
Sbjct: 626 ICPNFATWNALVRCFFDSLGHMG 648
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 71/255 (27%)
Query: 24 IVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLS-----------LIIE 72
+VR ER +L +IS L +EL K VF LS +I
Sbjct: 177 LVREGRKNER--GKLASAMISTLGRLGKVELAK----GVFETALSEGYGNTVFAFSALIS 230
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC-------------FVRMIRKGFV 118
+GK G D A++VF + ++ YN+ + C F M+R G
Sbjct: 231 AYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQ 290
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
PD+ T+ L+ A CS G + EA A+ + N+MI +G D+ T+
Sbjct: 291 PDRITYNSLL-AVCSRGGLWEA------------------ARNLFNEMIDRGIDQDVFTY 331
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV-----EDGHKLFPS 233
N+L++ +CK G++ L ++ + +P ++L N+V DG +
Sbjct: 332 NTLLDAVCKGGQMDLAYEI---MLEMPGK----------KILPNVVTYSTMADG---YAK 375
Query: 234 LGQFDDAFCFFSEMQ 248
G+ +DA ++EM+
Sbjct: 376 AGRLEDALNLYNEMK 390
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 29/144 (20%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPD 120
+ K G ++A++V + + ++ V+ YN+L F M + P+
Sbjct: 408 YAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPN 467
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVN 164
T++ L++ + EA E +E G N V SA +++
Sbjct: 468 LLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLD 527
Query: 165 KMIKQGSVPDLETFNSLIETICKS 188
+M K+G P++ T+NS+I+ +S
Sbjct: 528 EMTKEGIRPNVVTYNSIIDAFGRS 551
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T S + + + K G +++A+ ++N+ + YN+L + ++ R
Sbjct: 365 TYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEM 424
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G D T+ L++ + GK E +E+ P + + +++ + +GS+
Sbjct: 425 GSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLID-VYSKGSL 483
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ +E + + GL ADV I A+ K ++D A LL + ++G
Sbjct: 484 -----YEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEG 533
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 49/239 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------HVCFVRMIRKG 116
+ + +IE + G ID AVE+F + + L L + RM G
Sbjct: 225 SYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELG 284
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
+ P R + +V+ C K +EA+E LQE+ +KG P V + ++N K+G +
Sbjct: 285 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDAL 344
Query: 173 ------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
P++ T+N+L++ C G++ G+ D T + I
Sbjct: 345 RVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQ 404
Query: 208 SKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPN 255
+ I+ AFRLL + DG + L +L G+ D A F ++ + PN
Sbjct: 405 CIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPN 463
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+ +ELMK T + +++ F G + A+ + NK A + YN L
Sbjct: 345 RVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQ 404
Query: 106 ----HV-CFVRMIR----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
H+ R++R G + D+ T+ L+NA C G+ +A L +G P
Sbjct: 405 CIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNA 464
Query: 157 RSAKQMVN----------------KMIKQGSVPDLETFNSLIETICK 187
+ ++N KM+ G PD T++S IE +CK
Sbjct: 465 VTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 511
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T + +I + K G + +A+ V C+ V YN+L F +M
Sbjct: 326 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKM 385
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD T+ +L+ C G + A L+ + G + ++N + K G
Sbjct: 386 RACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 445
Query: 173 ----------------PDLETFNSLIETICKSGE 190
P+ TFNSLI +CKSG+
Sbjct: 446 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGK 479
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R G+ PD T L+ +C + ++ A++ ++ +GF V S ++ + + G
Sbjct: 179 MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 238
Query: 172 V------------PDLETFNSLIETICKS--GELGL 193
+ PD+ + +L++ +C + GE GL
Sbjct: 239 IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGL 274
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 25/165 (15%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
Y + + M+ G PD T+T + A+C G++ EA+ L E+S
Sbjct: 550 YGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMS------------- 596
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
K G D +N+L++ G+ + S+ +V +F R L
Sbjct: 597 ------KNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLV 650
Query: 222 --NLVEDGHKLFPS----LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
LVED L P+ + D F F M+ PN Y+
Sbjct: 651 RMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 695
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 22/150 (14%)
Query: 43 ISELSMWKTIEL---------MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93
++ +WK IEL MK + T S I+E F + G + A + +
Sbjct: 661 LTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKED 720
Query: 94 NCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREA 140
+ +Y +L CF + MI+ GF+P ++ L++ G+ +A
Sbjct: 721 SISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKA 780
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+E K ++P K +++ +IK+G
Sbjct: 781 KEIFMNSRWKDYSPDEIVWKVIIDGLIKKG 810
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 14 YFAAVNHIANIVRHDIYAERTL-NRLNLTLISELSMWKTI-ELMKPDSLSVFPQTLSLII 71
+F+A+ + +N +H R + RL E+ M + I + MK D ++ II
Sbjct: 60 FFSAIAN-SNAFQHTASTYRVMIERLGRE--CEMDMVQYILQQMKMDGINCCEDLFICII 116
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFV 118
+ + G + A+++F + F C+ V +YN L + + M + G +
Sbjct: 117 NGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLI 176
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
P+ T+ IL+ A C + ++ A + E+S+KG P + MV+ + K G +
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Query: 173 -----PDLETFNSLIETICKSGEL 191
P + +N+LI+ +CK G +
Sbjct: 237 AGRFKPSVPVYNALIDGMCKEGRI 260
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-- 158
LY +L + + MI+ G P+ + L++ CS+G + EA + ++ G P V +
Sbjct: 330 LYEALDL-WKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYS 388
Query: 159 --------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------- 191
A + N+MI G P++ T+ +++ +CK+
Sbjct: 389 ILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLE 448
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFD 238
G + T I + ++ A +LL + GH P+ + +++
Sbjct: 449 GCTPNTITFNTFIKGLCGNGRVEWAMKLLERM--QGHGCLPNITTYNELLDALFRMNKYE 506
Query: 239 DAFCFFSEMQIKTHPPNRPVY 259
+AF F E++ + PN Y
Sbjct: 507 EAFGLFQEIEARNLQPNLVTY 527
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKGFVPDKRTHTIL 127
+ A +F + A N Q ++ YN++ F R + +G PD T+ +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565
Query: 128 VNAWCSSGKMREAQEFLQELSD-KGFNPP----------------VRSAKQMVNKMIKQG 170
++A+C GK++ A + ++ +S K ++P + A ++K I QG
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQG 625
Query: 171 SVPDLETFNSLIETICKS-GELG 192
P+ T+N+L+ S G +G
Sbjct: 626 ICPNFATWNALVRCFFDSLGHMG 648
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +++ K+ + D A + K T C + +N+ +C RM
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERM 480
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
G +P+ T+ L++A K EA QE+ + P + +
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A Q+ K + +G+ PD T+N++I CK G++ + A +
Sbjct: 541 GEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQL 581
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 49/239 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------HVCFVRMIRKG 116
+ + +IE + G ID AVE+F + + L L + RM G
Sbjct: 47 SYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELG 106
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
+ P R + +V+ C K +EA+E LQE+ +KG P V + ++N K+G +
Sbjct: 107 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDAL 166
Query: 173 ------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
P++ T+N+L++ C G++ G+ D T + I
Sbjct: 167 RVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQ 226
Query: 208 SKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPN 255
+ I+ AFRLL + DG + L +L G+ D A F ++ + PN
Sbjct: 227 CIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPN 285
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+ +ELMK T + +++ F G + A+ + NK A + YN L
Sbjct: 167 RVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQ 226
Query: 106 ----HV-CFVRMIR----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
H+ R++R G + D+ T+ L+NA C G+ +A L +G P
Sbjct: 227 CIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNA 286
Query: 157 RSAKQMVN----------------KMIKQGSVPDLETFNSLIETICK 187
+ ++N KM+ G PD T++S IE +CK
Sbjct: 287 VTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCK 333
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T + +I + K G + +A+ V C+ V YN+L F +M
Sbjct: 148 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKM 207
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD T+ +L+ C G + A L+ + G + ++N + K G
Sbjct: 208 RACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 267
Query: 173 ----------------PDLETFNSLIETICKSGE 190
P+ TFNSLI +CKSG+
Sbjct: 268 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGK 301
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R G+ PD T L+ +C + ++ A++ ++ +GF V S ++ + + G
Sbjct: 1 MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60
Query: 172 V------------PDLETFNSLIETICKS--GELGL 193
+ PD+ + +L++ +C + GE GL
Sbjct: 61 IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGL 96
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 25/165 (15%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
Y + + M+ G PD T+T + A+C G++ EA+ L E+S
Sbjct: 372 YGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMS------------- 418
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
K G D +N+L++ G+ + S+ +V +F R L
Sbjct: 419 ------KNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLV 472
Query: 222 --NLVEDGHKLFPS----LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
LVED L P+ + D F F M+ PN Y+
Sbjct: 473 RMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYS 517
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 22/146 (15%)
Query: 47 SMWKTIEL---------MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
+WK IEL MK + T S I+E F + G + A + + +
Sbjct: 487 GVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISL 546
Query: 98 CVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
+Y +L CF + MI+ GF+P ++ L++ G+ +A+E
Sbjct: 547 NEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIF 606
Query: 145 QELSDKGFNPPVRSAKQMVNKMIKQG 170
K ++P K +++ +IK+G
Sbjct: 607 MNSRWKDYSPDEIVWKVIIDGLIKKG 632
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 102/258 (39%), Gaps = 62/258 (24%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR--- 111
PD++ TL+++++ K G++ A VF T + + YN+L C R
Sbjct: 296 PDTV-----TLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMN 350
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------- 156
MIR+G P ++ IL+N +C S +M EA+ L E+ K NP
Sbjct: 351 EAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLM 410
Query: 157 ---------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKIS 203
+ A + +M G +P+L T++ L++ CK G L L + K+
Sbjct: 411 QGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLE 470
Query: 204 IPAVSKEFMIDEAF---------RLLCNLVEDGHKLFPSL-------------GQFDDAF 241
V +I+ F L L DG + P++ G D+A+
Sbjct: 471 PNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIR--PTIRTYTVMIKGLLKEGLSDEAY 528
Query: 242 CFFSEMQIKTHPPNRPVY 259
F +M+ PN Y
Sbjct: 529 DLFRKMEDDGFLPNSCSY 546
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 103/256 (40%), Gaps = 64/256 (25%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT---------AFNCQQ---CVL-LY 102
KPD + T + II+ K L+++A+E ++ +NC C+L
Sbjct: 225 KPDVV-----TYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQL 279
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---- 158
N F M+ + +PD T TILV+ C G + EA+ + +++KG P + +
Sbjct: 280 NEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNAL 339
Query: 159 ------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKI 202
AK++ MI+QG P + ++N LI CKS + L A++ +
Sbjct: 340 MDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKAL 399
Query: 203 SIPAVSKEFMIDE------------------AFRLLCNLVE-----DGHKLFPSLGQFDD 239
+ V+ ++ ++ LL NLV DG F G D+
Sbjct: 400 NPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDG---FCKHGHLDE 456
Query: 240 AFCFFSEMQIKTHPPN 255
A MQ K PN
Sbjct: 457 ALKLLKSMQEKKLEPN 472
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 39/239 (16%)
Query: 36 NRLNLTLISELSMWKTIELMKPD-SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94
N N+++ L+ + + M P S++ F + L F K V + N+ F
Sbjct: 63 NSTNISIDDALASFYRMVRMNPRPSVAEFGKFLG----SFAKKKQYSTVVSLCNQMDLFG 118
Query: 95 CQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
V N L C R M + G P T L+N C+ GK++EA
Sbjct: 119 VTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAV 178
Query: 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGELGLCADVNTN 200
E E+ +G P V S ++N + K G+ ++ F + + CK DV T
Sbjct: 179 ELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCK-------PDVVTY 231
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEM 247
I ++ K+ ++++A L +++ G H F LGQ ++A F EM
Sbjct: 232 NTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHG-FCILGQLNEATRLFKEM 289
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 60 LSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------- 108
L + P T + +I G I AVE+FN+ + V+ YN++ +C
Sbjct: 152 LGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSM 211
Query: 109 ----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------- 156
F +M + G PD T+ ++++ C + +A EFL E+ D+G P V
Sbjct: 212 AVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVH 271
Query: 157 --------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG---ELGLCADVNTNKISIP 205
A ++ +M+ + +PD T L++ +CK G E L + T K P
Sbjct: 272 GFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEP 331
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLF 231
+S + + + L L+ + K+F
Sbjct: 332 NISTYNALMDGY-CLQRLMNEAKKVF 356
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 88/219 (40%), Gaps = 62/219 (28%)
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWC 132
+ G+ G++ +AV +N C V + + +M+R+ PD T IL++A C
Sbjct: 220 QIGERGILLDAV-TYNSLIDGCCS--VGRWQEVTQLLTKMVRENVDPDDYTFNILIDALC 276
Query: 133 SSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLE 176
G++ EAQ L +S +G P V A+++ N+M+K+G PD+
Sbjct: 277 KEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVL 336
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA---FRLLCNLVEDGHKLFPS 233
+N LI+ CK+ M+DEA F+ LCN L P+
Sbjct: 337 NYNVLIDGYCKTK----------------------MVDEAMVLFKELCN-----KNLVPT 369
Query: 234 LGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
+ ++ D C EM PP+ Y
Sbjct: 370 IASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTY 408
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I+ K G I A V + + ++ YN+L F RM
Sbjct: 267 TFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRM 326
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++G PD + +L++ +C + + EA +EL +K P + S +++ + G +
Sbjct: 327 VKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI 386
Query: 173 ----------------PDLETFNSLIETICKSGEL 191
PD+ T+N LI+ +CK G +
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRI 421
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I+ K G I A+ V + ++ YN++ C F RM
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
++ G PD + +L+N +C + + EA +E+ K P + S +++ + G +
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
P ++ L++ +C SG+ DV T I + A K D+A L +VE
Sbjct: 527 PHVQ---ELLDEMCDSGQ---SPDVITYNILLDAFCKTQPFDKAISLFRQIVE 573
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 34/195 (17%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDN 82
+IV ++ E +R N+ EL ++PD L+ +++I+ + K ++D
Sbjct: 299 DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNY-----NVLIDGYCKTKMVDE 353
Query: 83 AVEVFNKCTAFNCQQCVLLYNSL-----------HV--CFVRMIRKGFVPDKRTHTILVN 129
A+ +F + N + YNSL HV M PD T+ IL++
Sbjct: 354 AMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILID 413
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
A C G++ EA L + KG P V AK + N+M+K G P
Sbjct: 414 ALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEP 473
Query: 174 DLETFNSLIETICKS 188
D+ +N LI CK+
Sbjct: 474 DILNYNVLINGYCKT 488
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 24/119 (20%)
Query: 100 LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
+++ +L C ++ +G++ D+ T+ L+N +G+++ A LQE
Sbjct: 140 MIFKALDFC-QNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQE------------- 185
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG----ELGLCADVNTNKISIPAVSKEFMID 214
M K P+L +++LI+ +CK G LGLC+ + I + AV+ +ID
Sbjct: 186 ------MEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN--- 164
CF RM+R P L+ A G A +L KG +P + + ++N
Sbjct: 42 CFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYF 101
Query: 165 -------------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
++K G P+L TFN++I C +G + D N +++ +
Sbjct: 102 HQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN-----LLAQGY 156
Query: 212 MIDE-AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ D+ + L N + GQ A EM+ + PN +Y+
Sbjct: 157 LFDQFTYGTLINGLSKN-------GQIKAALHLLQEMEKSSVQPNLVMYS 199
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
+ R I +G PD T+ +V+ C K++ A++ L+ L G +P V++ ++N +
Sbjct: 565 ISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINAL 624
Query: 167 IKQGS 171
K GS
Sbjct: 625 CKDGS 629
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 53/238 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+KPD +S S +I F + G +D+A+ + F ++Y + F R
Sbjct: 231 IKPDLVS-----FSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGL 285
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
M+ G +PD T+ L+N C ++ +A+ L E+ ++G P
Sbjct: 286 MSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT 345
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNK 201
+ A Q+ + M+ Q PD+ T+N+LI+ +C+ G+L L D+++ +
Sbjct: 346 LIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE 405
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
I V+ +ID C GQ +DAF F EM K PN Y
Sbjct: 406 IFPNHVTYSILIDSH----C-----------EKGQVEDAFGFLDEMINKGILPNIMTY 448
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 60/233 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I + G +D A+++F+ + ++ YN+L R M
Sbjct: 342 TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 401
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ P+ T++IL+++ C G++ +A FL E MI +G +
Sbjct: 402 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDE-------------------MINKGIL 442
Query: 173 PDLETFNSLIETICKSGELG-------------LCADVNTNKISIPAVSKEFMIDEAFRL 219
P++ T+NS+I+ C+SG + + D+ T I KE + +AF+L
Sbjct: 443 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 502
Query: 220 LCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
L N++E K+ P + G +A F +M K P+R Y
Sbjct: 503 L-NMMEK-EKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 553
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 50/200 (25%)
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
+ V N C A L ++ + M ++ PD TH ++V+A +G
Sbjct: 100 IMVHNYCKA-------LEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGD------- 145
Query: 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------E 190
+A +V+ M+ +G P + T+NS+++ +C+SG +
Sbjct: 146 ------------AEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDD 193
Query: 191 LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDD 239
G+ DV + I I + I+EA ++ + G K LF G+ D
Sbjct: 194 FGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDH 253
Query: 240 AFCFFSEMQIKTHPPNRPVY 259
A + EM+ P+ +Y
Sbjct: 254 AMAYLREMRCFGLVPDGVIY 273
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +++ + G+ D A EVF + F G PD R+ T
Sbjct: 167 TYNSVLKGLCRSGMWDKAWEVFKEMDDF----------------------GVAPDVRSFT 204
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS-------------- 171
IL+ +C G++ EA + +E+ +G P + S ++ ++G
Sbjct: 205 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCF 264
Query: 172 --VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
VPD + +I C++G + G DV T + + KE + +A
Sbjct: 265 GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 324
Query: 217 FRLLCNLVEDG 227
LL + E G
Sbjct: 325 EGLLNEMRERG 335
>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
Length = 798
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 62/223 (27%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTH 124
G++ A+ ++N+ A C YN L +C F M+++G P+ +TH
Sbjct: 188 GVVPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTH 247
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIET 184
TIL+++ C++G+++EA+ L + DK G PD T+N+ +
Sbjct: 248 TILLSSMCNAGQLKEAENLLNSMEDK-------------------GCPPDEVTYNAFLSG 288
Query: 185 ICKSGELG-----LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF-------- 231
+CK+G + L A T + +ID F L E+G + +
Sbjct: 289 LCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLF--LAGRYEEGFQCYMEVLEQAD 346
Query: 232 --PSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
P + G+ DDAF FF EM+ K P+ Y
Sbjct: 347 FSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCY 389
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 108 CFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
C++ ++ + F PD +TI++ +G++ +A F E+ +K F P ++ +
Sbjct: 337 CYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKAL 396
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
G DL+ SL+ + ++ + D NT+ I I + K+ ++DEA ++ +VE
Sbjct: 397 CDSG---DLDGARSLMSEMAQN---NVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEV 450
Query: 227 G 227
G
Sbjct: 451 G 451
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 90/235 (38%), Gaps = 64/235 (27%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
M +++ + T +++I K L+D A++VF+ C V+ YN L
Sbjct: 412 MAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHR 471
Query: 106 ----HVCFVRM-------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
+ F +M + V D + LV++ C SG++ +A + L+ +
Sbjct: 472 LEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIM 531
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK----SGELGLCADVNTNKISI 204
D G VPD+ T+N+L+ +CK G L L ++ S+
Sbjct: 532 DSGV-------------------VPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSL 572
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ +ID R H+ ++DA F ++ P+ +Y
Sbjct: 573 DEITYGTLIDSLLR--------AHR-------YNDAMTLFQDILHIGGTPSLSIY 612
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 44/224 (19%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN--------- 103
ELM +S T +++++ FGK +ID A +K F + +Y
Sbjct: 445 ELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKV 504
Query: 104 --SLHV--CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
S HV F MI++G+VPD ++I+++++ + K+ EA ++ D+G P V +
Sbjct: 505 NKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTY 564
Query: 160 KQMVN----------------KMIKQGSVPDLETFNSLIETICKS-------------GE 190
++N MI +G PD + SLI CK G+
Sbjct: 565 TSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGK 624
Query: 191 LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
LGL AD I SK +D A L+ + G L PS+
Sbjct: 625 LGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKG--LTPSV 666
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/291 (19%), Positives = 97/291 (33%), Gaps = 101/291 (34%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
S W ++++ + +I+ F + G + A+EVF+
Sbjct: 264 SAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDA----------------- 306
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--- 163
M + G VPD +++ILV+ C G + + L E++ G P + S ++
Sbjct: 307 -----MKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGL 361
Query: 164 ------------------------------------------------NKMIKQGSVPDL 175
N M+ VPD
Sbjct: 362 CRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDA 421
Query: 176 ETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+ SLI C+ L G+ +V T I + KE MIDEAF L
Sbjct: 422 YNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHK 481
Query: 223 LVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPNRPVYA 260
+ + G + P+L + D + F++M + + P+ VY+
Sbjct: 482 VRQFG--IVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYS 530
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 38/232 (16%)
Query: 27 HDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEV 86
+D+ E N + TL+S S+ L + + + + + E+ KH I ++ +
Sbjct: 336 YDLLVEMARNGIAPTLVSYSSLLHG--LCRAGKVELAFELFRRLEEQGFKHDHIVYSIIL 393
Query: 87 FNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
C N + L+N M+ FVPD +T L+ A+C + +A +
Sbjct: 394 NGCCQHLNIEVVCDLWND-------MVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFEL 446
Query: 147 LSDKGFNPPVRSAKQMVN-----KMIKQ-----------GSVPDLETFNSLIETICKSG- 189
+ D G +P V + +V+ +MI + G VP+L + +I +CK
Sbjct: 447 MLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNK 506
Query: 190 ------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+ G D I I + K + EAFRL ++++G K
Sbjct: 507 SDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTK 558
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 31/148 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------- 154
M KG P+ T+ + + ++ A FLQ L +G NP
Sbjct: 237 MEMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRG-NPCNTYCFNAVIQGFCREG 295
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKE 210
V+ A ++ + M K G VPD +++ L++ +CK G++ L ++ N I+ VS
Sbjct: 296 QVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYS 355
Query: 211 FM---------IDEAFRLLCNLVEDGHK 229
+ ++ AF L L E G K
Sbjct: 356 SLLHGLCRAGKVELAFELFRRLEEQGFK 383
>gi|297610666|ref|NP_001064867.2| Os10g0479200 [Oryza sativa Japonica Group]
gi|255679497|dbj|BAF26781.2| Os10g0479200 [Oryza sativa Japonica Group]
Length = 818
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 32/178 (17%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVC---------FVRMIRKGFVPDKRT 123
+ + ++ +A+ V +K ++ N Q V Y+SL H F M G P + +
Sbjct: 161 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGLRMTDVALELFEEMESCGVSPSEYS 220
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKG-FNPP----------------VRSAKQMVNKM 166
H+I++N C K+ EA FLQE +G F P V+SAK + M
Sbjct: 221 HSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSAKSFLCLM 280
Query: 167 IKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+K G VPD TF++LI +CK G L L V + + V+ +I+ +RLL
Sbjct: 281 LKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLIN-GYRLL 337
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
M++ G VPD+ T + L++ C G M EA + + ++ +G + + ++N
Sbjct: 280 MLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGL 339
Query: 166 ----------MIKQGSVPDLETFNSLIETICKSGEL 191
M QG PDL T+ LI C+SG++
Sbjct: 340 TKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDV 375
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S+I++ K D A+ V + + YN+L F M
Sbjct: 607 TYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIM 666
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN---------PPVRSAKQM- 162
+ +G VP T+ +L+N C GK+ +A+ L+ L + G + AK M
Sbjct: 667 LCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMP 726
Query: 163 ------VNKMIKQGSVPDLETFNSLIETICK 187
V K++ G +E F++ I +CK
Sbjct: 727 INAVLLVGKLLDAGFEASIEDFSAAINRLCK 757
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 75/271 (27%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV 110
E++K S S T + +++ F K G++ A+EV + N V+ Y L +C V
Sbjct: 260 EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV 319
Query: 111 -----------RMIRKGFVPDKRTHTILVNA----------------------------- 130
++R+G++PD +T LV+
Sbjct: 320 GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMY 379
Query: 131 ------WCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIK 168
+C +G + +A+E L E+ PP + A +++ ++
Sbjct: 380 SSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 439
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G VPD+ T+N+LI+ +CK+ + D+ S + + LC
Sbjct: 440 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCR------ 493
Query: 229 KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+G+ DDA+ EM K H PN VY
Sbjct: 494 -----VGRVDDAWSLVVEMSRKRHAPNVVVY 519
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 50 KTIELMKP-DSLSVFPQT--LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
+ +E ++ D SV P +++I K G D AV++F + + ++ YN++
Sbjct: 80 RALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVI 139
Query: 106 -HVC-----------FVRMIRKGF--VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
+C MIRKG PD T+ L+NA+ + ++REA F +++ G
Sbjct: 140 SGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAG 199
Query: 152 FNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSGELGLCA 195
NP V + +V+ + K G VPD+ T+NS+I +C +G++ A
Sbjct: 200 INPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAA 259
Query: 196 DV 197
++
Sbjct: 260 EI 261
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
++ +G+VPD T+ L++ C + ++REA + E++ +G P
Sbjct: 437 LVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGR 496
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A +V +M ++ P++ + SLI+ +CKS +
Sbjct: 497 VDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 532
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 46/159 (28%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G VPD T+ +++A C +GK+ EA E L+ +S PDL
Sbjct: 234 GPVPDVITYNSIIHALCVAGKVVEAAEILKTMS----------------------CSPDL 271
Query: 176 ETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
TFN+L++ CK+G L + DV T I + + + + AF LL
Sbjct: 272 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 331
Query: 223 LVEDGH--------KLFPSL---GQFDDAFCFFSEMQIK 250
+V G+ L L G+ ++A EM ++
Sbjct: 332 IVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVR 370
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
++ G P+ T IL+ C +G+ A EFL+ L + P V +++ + K G+
Sbjct: 53 LLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGN 112
Query: 172 ----------------VPDLETFNSLIETICKSGEL 191
P++ T+N++I +CKSG L
Sbjct: 113 PDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNL 148
>gi|302772380|ref|XP_002969608.1| hypothetical protein SELMODRAFT_91676 [Selaginella moellendorffii]
gi|300163084|gb|EFJ29696.1| hypothetical protein SELMODRAFT_91676 [Selaginella moellendorffii]
Length = 408
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 86 VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
V +K C Q V L F MI G PD+ + +++N+ C GK+ EA ++ +
Sbjct: 57 VMHKLVKAGCFQVVPL------IFKNMIWAGNKPDRFAYNVVINSLCKLGKVDEALKYTR 110
Query: 146 ELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
E+S+KG+ P V ++ ++ +M+ P++ TFN L++T CK+G
Sbjct: 111 EMSEKGYPPDVYTYNFVMEGIGNTTNLEASAKVFEEMVANKCQPNIVTFNVLLDTFCKAG 170
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
+ AD+ +S E AFR+L + F G+ D A ++
Sbjct: 171 KTAQAADLVRKMVSYGCSPGE----RAFRILMD-------AFGRSGEVDAAHTLVRDLMK 219
Query: 250 KTHPPN 255
PN
Sbjct: 220 MNFYPN 225
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 91/248 (36%), Gaps = 63/248 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + ++E G ++ + +VF + A CQ ++ +N L F + M
Sbjct: 123 TYNFVMEGIGNTTNLEASAKVFEEMVANKCQPNIVTFNVLLDTFCKAGKTAQAADLVRKM 182
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS- 171
+ G P +R IL++A+ SG++ A +++L F P + ++ ++ K G
Sbjct: 183 VSYGCSPGERAFRILMDAFGRSGEVDAAHTLVRDLMKMNFYPNSLTLNVIMTRLNKVGKP 242
Query: 172 ----------------VPDLETFNSLIETICKSG--------------ELGLCADVNTNK 201
V DL T+N +I+ + K G E L D T
Sbjct: 243 EVALELYYDLKAAGGFVHDLITYNIIIDLLGKVGKVDEAWKAFEELKLEQRLVPDHYTYN 302
Query: 202 ISIPAVSKEFMIDEAFRLL---------------CNLVEDGHKLFPSLGQFDDAFCFFSE 246
+ ++K + F L+ CNLVE F G D A E
Sbjct: 303 TIVVRMAKVGRLQACFELIKEMEGRNVSLDRSSYCNLVE----AFGRAGHIDQACSMLRE 358
Query: 247 MQIKTHPP 254
M+ H P
Sbjct: 359 MKASGHSP 366
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 24/206 (11%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
++FP TL+++I+ K G + NA+E+F K + V+ YN+L F +
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
M+ K +P +++ILVNA CS G + EA E+ K P V M+
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ G+ D E+F +E + G + C NT I +E + +AF L+ + E
Sbjct: 595 YCRSGNASDGESF---LEKMISEGFVPDCISYNT---LIYGFVREENMSKAFGLVKKMEE 648
Query: 226 DGHKLFPSLGQFDD---AFCFFSEMQ 248
+ L P + ++ FC ++M+
Sbjct: 649 EQGGLVPDVFTYNSILHGFCRQNQMK 674
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 27/162 (16%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
KG PD T+ L++A+ S G M EA E + + KGF+P V +
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYER 323
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
AK++ +M++ G PD T+ SL+ CK G++ V T K+ S++ + D
Sbjct: 324 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDV-----VETEKVFSDMRSRDVVPD---- 374
Query: 219 LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
L+C LF G D A +F+ ++ P+ +Y
Sbjct: 375 LVC--FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------R 157
R G + T I+VNA C GKM + FL ++ +KG P +
Sbjct: 228 RSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLME 287
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFMI 213
A +++N M +G P + T+N++I +CK G+ + A++ + +S + + ++
Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 347
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQIKTHPPN 255
EA + ++VE K+F + D D CF S M + T N
Sbjct: 348 MEACK-KGDVVET-EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGN 390
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 49/235 (20%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
V+P T + +I + GL++ A E+ N V YN++ +C
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA 324
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-- 163
F M+R G PD T+ L+ C G + E ++ ++ + P + M+
Sbjct: 325 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSL 384
Query: 164 --------------NKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
N + + G +PD + LI+ C+ G + G D
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP---SLGQFDDAFCFFSEMQ 248
V T + + K M+ EA +L + E LFP +L D C +Q
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTE--RALFPDSYTLTILIDGHCKLGNLQ 497
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LH-VC-----------FVRMIR 114
+++I+ + + G+I A+ + N+ C V+ YN+ LH +C F M
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 473
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNP--PVRS 158
+ PD T TIL++ C G ++ A E Q++ +K GF + +
Sbjct: 474 RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDT 533
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
AK++ M+ + +P +++ L+ +C G L
Sbjct: 534 AKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 21/167 (12%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
H F + KGF L+ + G + A QE+S G V + MVN
Sbjct: 185 HEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNA 244
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ K G + + TF S ++ E G+ D+ T I A S + +++EAF L+ +
Sbjct: 245 LCKDGKMEKVGTFLSQVQ------EKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM-- 296
Query: 226 DGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G P + G+++ A F+EM P+ Y
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 102 YNSLHVCFVR---------MIRK------GFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
YN+L FVR +++K G VPD T+ +++ +C +M+EA+ L++
Sbjct: 623 YNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRK 682
Query: 147 LSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+ ++G NP + M+N + Q ++ +
Sbjct: 683 MIERGVNPDRSTYTCMINGFVSQDNLTE 710
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P + S+++ G + A V+++ + N + V++ NS+ + R
Sbjct: 550 PISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLE 609
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--GFNPPV------------ 156
MI +GFVPD ++ L+ + M +A ++++ ++ G P V
Sbjct: 610 KMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCR 669
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLI 182
+ A+ ++ KMI++G PD T+ +I
Sbjct: 670 QNQMKEAEVVLRKMIERGVNPDRSTYTCMI 699
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
V +MI +G PD+ T+T ++N + S + EA E+ +GF+P
Sbjct: 677 EVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725
>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 439
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 32/232 (13%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH- 106
MW I MK + + +T +I+ ++ + ++ AV FN ++ + +N L
Sbjct: 75 MWDLINAMKRKRM-LNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFS 133
Query: 107 -VCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C + +RK FVPD +T+TIL+ W + + +A+E +E+ D G +P
Sbjct: 134 ALCKSKNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPD 193
Query: 156 VRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ + MV+ + K G V + L+ + TICK ++T I E I+
Sbjct: 194 IVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGI-------ENRIE 246
Query: 215 EAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPN 255
+A + ++G K F + +F + + +EM K PN
Sbjct: 247 DAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPN 298
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------------CFVRM 112
T ++++ K G +D A+++ + C+ +Y+ L H F+ M
Sbjct: 196 TYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGM 255
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G D + L+ A+C K + L E+ KG P R+ ++N +I +G
Sbjct: 256 EKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGET 315
Query: 173 ---------------PDLETFNSLIETICKSGELGLCADV 197
PD +T+ +I+ C+ EL + V
Sbjct: 316 DEAFRVFRRMIKVCEPDADTYTMMIKMFCERNELEMALKV 355
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M+P+S +TL++I+ G D A VF + C+ Y + F
Sbjct: 295 MQPNS-----RTLNIILNNLIARGETDEAFRVFRRMIKV-CEPDADTYTMMIKMFCERNE 348
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M +K FVP T ++L+N C G + A L+++ +KG P + +
Sbjct: 349 LEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGR 408
Query: 162 MVNKMIKQGSVPDLETFNSLIETICK 187
+ + +IK+G LE I + K
Sbjct: 409 LRHLLIKEGREDVLEFLQQKINVLIK 434
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 61/318 (19%)
Query: 2 TTVAAAKTSKEDYFAAVNHIANIVRHDI------YAERTLNRLNLTLISELSMWKTIELM 55
TT+ A D AA H+++++R + Y L L + + LM
Sbjct: 78 TTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHAC--RLFLLM 135
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
+ P T + +++ G++ A+ VF C +Y+ + +C
Sbjct: 136 PQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRA 195
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
+ KGFVP+ + L++ +CS+G + A + + + KG P VR+ Q+
Sbjct: 196 GEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQL 255
Query: 163 V----------------NKMIKQGSVPDLETFNSLIETICKSGEL-------------GL 193
+ ++MI+ G P++ T+ +LI+ C G L GL
Sbjct: 256 ICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGL 315
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFC 242
+ T + I A+ K I+EA + L +LV+ G K ++ S+ G+FD A
Sbjct: 316 APNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHN 375
Query: 243 FFSEMQIKTHPPNRPVYA 260
++ + P+ +Y+
Sbjct: 376 LMQKIITEGFVPDAHMYS 393
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 42/200 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ + G ++ A+++F + C V Y L V + RMI G
Sbjct: 220 LIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAG 279
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAK 160
P+ T+T L+ CS G + A L + G P + A+
Sbjct: 280 LAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQ 339
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
Q + ++++G + + S+I+ +CKSG+ G D + I +
Sbjct: 340 QFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGL 399
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
+E + EA LL +++E G
Sbjct: 400 CRENKLLEAISLLNDMIESG 419
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 42/223 (18%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
++ + M+ L+ T ++I+ KHG I+ A + + ++Y S+
Sbjct: 304 FRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDA 363
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
H ++I +GFVPD ++ L++ C K+ EA L ++ + G
Sbjct: 364 LCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQAN 423
Query: 156 V----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------- 191
S K + ++M G PD+ T+ I + C+ G +
Sbjct: 424 AVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMI 483
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
G+ ++ T I + ++ +AF L N++++G K
Sbjct: 484 QMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCK 526
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 27/173 (15%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV------- 163
RM G PD T+T+ + ++C G+M +A+ + ++ D G P + + ++
Sbjct: 449 RMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLG 508
Query: 164 ---------NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK----E 210
MI G P+ E++ L+ + K D+ + IS+ + E
Sbjct: 509 LVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSY---HDLVADSISLWKIVDMKVLE 565
Query: 211 FMIDEAFRLLCNLVEDGHKLF----PSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+++E +L C+ + F + + ++A F MQ P+ VY
Sbjct: 566 ELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVY 618
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM----- 166
++ KG VPD T+ I+++A+C G + A +F ++ + F P V + ++N +
Sbjct: 546 LMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGK 605
Query: 167 -----------IKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+++G D+ T+N+LI+T+CK G++ GL D T +
Sbjct: 606 LDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNV 665
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
+ A+S+ +EA +L L E G
Sbjct: 666 VLSALSEAGRTEEAQNMLHKLAESG 690
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 42/222 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+ +E M+ + T +++I+ K G ++ A+ NK V+ YN+L
Sbjct: 366 RLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAH 425
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M+R+G D T ++ C + EAQ LQ +GF P
Sbjct: 426 CKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDE 485
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------- 191
S A ++ ++MI++ P + T+N+LI+ + + G L
Sbjct: 486 VSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNE 545
Query: 192 ----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
GL D T I I A KE ++ AF+ +VE+ K
Sbjct: 546 LMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFK 587
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 49/175 (28%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
MI K P T+ L+ G+++EA + L EL +KG P
Sbjct: 511 MIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGD 570
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ +A Q NKM++ PD+ T N+L+ +C +G+L D+
Sbjct: 571 LENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKL----------------------DK 608
Query: 216 AFRLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
A +L + VE G K+ + +L G D A FF++M+ + P+ Y
Sbjct: 609 ALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTY 663
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 38/120 (31%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSA 159
G PD T+ L+NA C G + EA+ L + G P ++ A
Sbjct: 234 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQA 293
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++V M G PDL T+N L +C++G+ +DEAFRL
Sbjct: 294 TKVVEAMTANGFEPDLWTYNVLAAGLCQAGK----------------------VDEAFRL 331
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 77/206 (37%), Gaps = 52/206 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
MK D ++ T + ++ + + G I A +V TA
Sbjct: 265 MKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTA---------------------- 302
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------VR 157
GF PD T+ +L C +GK+ EA E+ G P
Sbjct: 303 NGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSS 362
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A +++ +M ++G L T N +I+ +CK GEL GL DV T I
Sbjct: 363 DALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLI 422
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKL 230
A K I +A+ L+ +V G KL
Sbjct: 423 HAHCKAGNIAKAYTLMDEMVRRGLKL 448
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 33/205 (16%)
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAW 131
+E + G + V +N A C +C ++L + M KG TH I++
Sbjct: 333 DEMERLGTLLPDVVTYNTL-ADACFKCRCSSDALRL-LEEMREKGVKATLVTHNIVIKGL 390
Query: 132 CSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDL 175
C G++ A L +++D G P V A ++++M+++G D
Sbjct: 391 CKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDT 450
Query: 176 ETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
T N+++ +CK + G D + + A KE+ + A RL
Sbjct: 451 FTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDE 510
Query: 223 LVEDGHKLFPSLGQFDDAFCFFSEM 247
++E KL PS+ ++ S M
Sbjct: 511 MIE--KKLTPSISTYNTLIKGLSRM 533
>gi|356575965|ref|XP_003556106.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like isoform 1 [Glycine max]
gi|356575967|ref|XP_003556107.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like isoform 2 [Glycine max]
Length = 480
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 57/268 (21%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
++W+ ++ M L +T +++I G+ GL N VE F K FN + YN+ L
Sbjct: 174 ALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKNLVERFIKSKTFNFRPFKHSYNAIL 233
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H V +M+ GF D T+ I++ A GK+ + L E+ GF+
Sbjct: 234 HGLLVLNQYKLIEWVYQQMLLDGFPSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFS 293
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-- 195
P + A ++N M + G P + F +LI+ + ++G L C
Sbjct: 294 PDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYF 353
Query: 196 -----------DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------- 234
DV + I I++A + +++ + P++
Sbjct: 354 FDEMIKNECRPDVVAYTVMITGYVVAGEIEKALEMYQDMIS--REQVPNVFTYNSIIRGL 411
Query: 235 ---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+FD+A EM+ K PN VY
Sbjct: 412 CMAGKFDEACSMLKEMETKGCSPNSVVY 439
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
TL+ ++ +G+ ++ A E+ N + YNSL + R +
Sbjct: 616 TLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREV 675
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ KG PD+ ++ ++ A+C +G+M+EA E+ D P V +
Sbjct: 676 LEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMF 735
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +V MIKQG PD T+NS+++ CK
Sbjct: 736 AEAIDVVRYMIKQGCKPDQNTYNSIVDWYCK 766
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 17/112 (15%)
Query: 95 CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C++ L ++H+ F +M +GF PDK T+ L++ + S + +EA + LQE+ GF+P
Sbjct: 274 CRRGSLYEEAVHL-FQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSP 332
Query: 155 P----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A + +M+ +G PD+ T+ +L+ K+G+
Sbjct: 333 TSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGK 384
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 18/89 (20%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-----------------PVRSAKQM 162
D +T L+NA+ SSG+ R+A ++ G NP P + +
Sbjct: 192 DVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTAL 251
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL 191
V M +G PDL T+N+LI + C+ G L
Sbjct: 252 VEAMRSRGVAPDLYTYNTLI-SCCRRGSL 279
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 32/137 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ G G ++VF+ NC ++ +N+L F + M
Sbjct: 406 TFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEM 465
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R GFV ++ T L++A+ G +A + M++ G V
Sbjct: 466 KRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKS-------------------MLEAGVV 506
Query: 173 PDLETFNSLIETICKSG 189
PDL T+N+++ + + G
Sbjct: 507 PDLSTYNAVLAALARGG 523
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 32/176 (18%)
Query: 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM----- 112
D + + + +I + G +AV +FNK C ++ YN + + +M
Sbjct: 187 DGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWS 246
Query: 113 --------IR-KGFVPDKRTHTILVNAWCSSGKM-REAQEFLQELSDKGFNPPV------ 156
+R +G PD T+ L++ C G + EA Q++ +GF P
Sbjct: 247 NVTALVEAMRSRGVAPDLYTYNTLISC-CRRGSLYEEAVHLFQQMKLEGFTPDKVTYNAL 305
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
+ A +++ +M G P T+NSLI K G L D+ T +
Sbjct: 306 LDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMV 361
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 49/229 (21%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E PD + T + +++ FGK A++V + A + YNSL + +
Sbjct: 292 LEGFTPDKV-----TYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAK 346
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
M+ KG PD T+T L++ + +GK A + E+ G P + +
Sbjct: 347 GGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICT 406
Query: 159 AKQMVNKMIKQGSV----------------PDLETFNSLIETICKSG------------- 189
++ +G PD+ T+N+L+ ++G
Sbjct: 407 FNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMK 466
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
G A+ +T I A S+ D+A + +++E G + P L ++
Sbjct: 467 RAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAG--VVPDLSTYN 513
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/151 (18%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------- 156
F+ + R+G PD T +++ + + +A E L + + F P +
Sbjct: 601 AFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYS 660
Query: 157 -----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVN 198
+ +++++ +++++G PD ++N++I C++G + L DV
Sbjct: 661 RSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVV 720
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
T I + + M EA ++ +++ G K
Sbjct: 721 TYNTFIATYAADSMFAEAIDVVRYMIKQGCK 751
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 18/108 (16%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----- 109
MKPD +S + +I + ++G + A +F++ V+ YN+ +
Sbjct: 680 MKPDRIS-----YNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSM 734
Query: 110 -------VR-MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
VR MI++G PD+ T+ +V+ +C + EA F++ LS+
Sbjct: 735 FAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSN 782
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 29/142 (20%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KGFVPD+ T+ L+N C+ G + A E E KG P +
Sbjct: 319 KGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 378
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A Q++N+M ++G PD++T+N +I +CK G + G DV T I
Sbjct: 379 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 438
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
K +D A +L+ + E G
Sbjct: 439 GYCKRLKLDSALQLVERMWEYG 460
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 38/188 (20%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
I + + G + +AV+ F + F C YN++ H +VRM+ G
Sbjct: 57 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------------FNPPVRSAKQMVNK 165
PD THTI + ++C + + A L+ L +G + A+Q+ ++
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 176
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
M+ P+L FN ++ +CK G++ G+ ++ T I I + +
Sbjct: 177 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 236
Query: 213 IDEAFRLL 220
+ EA RL+
Sbjct: 237 LPEAVRLV 244
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 50/239 (20%)
Query: 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
IS+ ++ +MK VF T + +I+ + K +D+A+++ + + + Y
Sbjct: 411 ISDATVVMNDAIMKGYLPDVF--TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITY 468
Query: 103 NSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
NS+ +C F MI KG P+ T+ IL+ +C S KM EA + + ++S
Sbjct: 469 NSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 528
Query: 150 KGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-- 191
+G +P S A + K+ ++G +TFN+LI SG+L
Sbjct: 529 EGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF--SGKLNM 586
Query: 192 -------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
G AD T ++ I K +D A+ L +++ G PS+ F
Sbjct: 587 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG--FIPSMSTF 643
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 29/151 (19%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFV 110
P T +++IE F + ++ A +V K + + +N+L ++ F
Sbjct: 500 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 559
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
++ KG+ T L+ A+ M A++ E+ KG + + +++
Sbjct: 560 KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTA 619
Query: 165 ----------KMIKQGSVPDLETFNSLIETI 185
+MIK+G +P + TF +I ++
Sbjct: 620 NVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 650
>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 42/224 (18%)
Query: 47 SMWKTIELMKPD-SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W +E M+ D S+ + + +++ F +++ A+EV ++ + C+ ++ L
Sbjct: 133 AVWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDEMPKYGCEPDEYVFGCL 192
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+R F P + T L+ WC GK+ EA+ L ++ + GF
Sbjct: 193 LDALCKNGSVKEAASLFEDMRVRFSPSLKHFTCLLYGWCKEGKLLEAKHVLVQMREAGFE 252
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------ 191
P + A ++ ++ ++G P+ ++ LI+ +C ++
Sbjct: 253 PDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRV 312
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G ADV T + K MID+ +++L ++++ GH
Sbjct: 313 FVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGH 356
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
FV M R G D T+T LV+ +C + + + LQ + KG P
Sbjct: 313 FVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLAHEK 372
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
+ K+++ +M K G +PDL +N +I CK GE+ D N++ + +S
Sbjct: 373 KEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDA-WNEMEVSGLS 427
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 40/219 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
II+ F K G I+ A V+ + + Y SL F + M RKG
Sbjct: 395 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 454
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAK 160
D + + L++ +C M+ A E L EL G +P V A
Sbjct: 455 LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI 514
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ KM+ +G DL+T+ SLI+ + KSG L +D++T +S + + L
Sbjct: 515 DLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGL 574
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
CN GQF++A +M K P+ +Y
Sbjct: 575 CN-----------KGQFENARKILEDMNGKNMIPSVLIY 602
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 60/269 (22%)
Query: 49 WKTIELMKPDSL-----SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
W+ M D+L +VF T + ++ K G ++ A ++++ A V+ YN
Sbjct: 231 WQNAFTMFNDALESGLANVF--TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYN 288
Query: 104 SLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD- 149
++ + R M+ GF P+ T TIL++ + G + A + D
Sbjct: 289 NIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDA 348
Query: 150 -------------KGFNPPVRS--AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
KG RS + + NK + QG VP +N++I+ K G + L
Sbjct: 349 NILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLA 408
Query: 195 ADVN-------------TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-FPSLGQFDDA 240
++V T I K ID A +LL ++ G K+ + G D
Sbjct: 409 SNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDG 468
Query: 241 FC----------FFSEMQIKTHPPNRPVY 259
FC +E++ PNR +Y
Sbjct: 469 FCKRRDMKSAHELLNELRGAGLSPNRFIY 497
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 20/100 (20%)
Query: 100 LLYNS-LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
LLY S +H M+ KG +PD R HT+L+N C+ G+ A++ L++++ K P V
Sbjct: 545 LLYASDIHT---EMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLI 601
Query: 157 --------------RSAKQMVNKMIKQGSVPDLETFNSLI 182
+ A ++ ++M+ +G VPD T++ L+
Sbjct: 602 YNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILV 641
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C N + ++L N + G VP+K T+++L++ C +G + +A EF E+
Sbjct: 156 CMQGNLRSALVLVNEIS-------ESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKT 208
Query: 150 KGFNPPVRSAKQMVNKMIK---------------QGSVPDLETFNSLIETICKSGEL 191
KG V S ++ +K + + ++ TFN+L+ +CK G++
Sbjct: 209 KGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKM 265
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 40/219 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
II+ F K G I+ A V+ + + Y SL F + M RKG
Sbjct: 513 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 572
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAK 160
D + + L++ +C M+ A E L EL G +P V A
Sbjct: 573 LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI 632
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ KM+ +G DL+T+ SLI+ + KSG L +D++T +S + + L
Sbjct: 633 DLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGL 692
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
CN GQF++A +M K P+ +Y
Sbjct: 693 CN-----------KGQFENARKILEDMNGKNMIPSVLIY 720
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 60/269 (22%)
Query: 49 WKTIELMKPDSL-----SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
W+ M D+L +VF T + ++ K G ++ A ++++ A V+ YN
Sbjct: 349 WQNAFTMFNDALESGLANVF--TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYN 406
Query: 104 SLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD- 149
++ + R M+ GF P+ T TIL++ + G + A + D
Sbjct: 407 NIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDA 466
Query: 150 -------------KGFNPPVRS--AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
KG RS + + NK + QG VP +N++I+ K G + L
Sbjct: 467 NILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLA 526
Query: 195 ADVN-------------TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-FPSLGQFDDA 240
++V T I K ID A +LL ++ G K+ + G D
Sbjct: 527 SNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDG 586
Query: 241 FC----------FFSEMQIKTHPPNRPVY 259
FC +E++ PNR +Y
Sbjct: 587 FCKRRDMKSAHELLNELRGAGLSPNRFIY 615
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 20/100 (20%)
Query: 100 LLYNS-LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
LLY S +H M+ KG +PD R HT+L+N C+ G+ A++ L++++ K P V
Sbjct: 663 LLYASDIHT---EMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLI 719
Query: 157 --------------RSAKQMVNKMIKQGSVPDLETFNSLI 182
+ A ++ ++M+ +G VPD T++ L+
Sbjct: 720 YNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILV 759
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C N + ++L N + G VP+K T+++L++ C +G + +A EF E+
Sbjct: 274 CMQGNLRSALVLVNEIS-------ESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKT 326
Query: 150 KGFNPPVRSAKQMVNKMIK---------------QGSVPDLETFNSLIETICKSGEL 191
KG V S ++ +K + + ++ TFN+L+ +CK G++
Sbjct: 327 KGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKM 383
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 29/142 (20%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KGFVPD+ T+ L+N C+ G + A E E KG P +
Sbjct: 320 KGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 379
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A Q++N+M ++G PD++T+N +I +CK G + G DV T I
Sbjct: 380 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 439
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
K +D A +L+ + E G
Sbjct: 440 GYCKRLKLDSALQLVERMWEYG 461
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 38/188 (20%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
I + + G + +AV+ F + F C YN++ H +VRM+ G
Sbjct: 58 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------------FNPPVRSAKQMVNK 165
PD THTI + ++C + + A L+ L +G + A+Q+ ++
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 177
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
M+ P+L FN ++ +CK G++ G+ ++ T I I + +
Sbjct: 178 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 237
Query: 213 IDEAFRLL 220
+ EA RL+
Sbjct: 238 LPEAVRLV 245
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 50/239 (20%)
Query: 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
IS+ ++ +MK VF T + +I+ + K +D+A+++ + + + Y
Sbjct: 412 ISDATVVMNDAIMKGYLPDVF--TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITY 469
Query: 103 NSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
NS+ +C F MI KG P+ T+ IL+ +C S KM EA + + ++S
Sbjct: 470 NSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 529
Query: 150 KGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-- 191
+G +P S A + K+ ++G +TFN+LI SG+L
Sbjct: 530 EGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF--SGKLNM 587
Query: 192 -------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
G AD T ++ I K +D A+ L +++ G PS+ F
Sbjct: 588 HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG--FIPSMSTF 644
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 29/151 (19%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFV 110
P T +++IE F + ++ A +V K + + +N+L ++ F
Sbjct: 501 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 560
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
++ KG+ T L+ A+ M A++ E+ KG + + +++
Sbjct: 561 KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTA 620
Query: 165 ----------KMIKQGSVPDLETFNSLIETI 185
+MIK+G +P + TF +I ++
Sbjct: 621 NVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 651
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 101/250 (40%), Gaps = 52/250 (20%)
Query: 47 SMWKTIELMKPDSLSVFPQ----TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
++WK + D + PQ T S II F + G I + + F+C+ Y
Sbjct: 249 NVWKLFK----DVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAY 304
Query: 103 N-SLHVCFVR------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
N ++ C +R MI +G P T ++NA+C G + EA++ L +
Sbjct: 305 NIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKE 364
Query: 150 KGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--- 190
GF+P + A + +M K+G PD TFN L+ K G
Sbjct: 365 MGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREED 424
Query: 191 ----------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDA 240
LGL D + IS+ + +DEA L +++E G L PS+ F+
Sbjct: 425 GDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKG--LSPSIIAFNSV 482
Query: 241 FCFFSEMQIK 250
+S+ ++
Sbjct: 483 IAAYSQAGLE 492
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 64/242 (26%)
Query: 17 AVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTL--SLIIEEF 74
+VN++A V D + +R ++ S+W +E +FP + S I+
Sbjct: 543 SVNNMAFTVLLDKFFKRG------DVVGAQSLWGEME-----RRGIFPDVVAFSAFIDGL 591
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
K GL++ A VF + M+RKG +P+ + L+ +C
Sbjct: 592 SKQGLVEEAYNVF----------------------LEMLRKGLIPNNFAYNSLICGFCKC 629
Query: 135 GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETF 178
GK+ EA + + + +G P + + ++ + KQG + PD+ T+
Sbjct: 630 GKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITY 689
Query: 179 NSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
N+LI CK+ ++ G D+ T I I ++ A +L LV
Sbjct: 690 NTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVS 749
Query: 226 DG 227
G
Sbjct: 750 AG 751
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 28/152 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T ++II K G + +A+ VF ++ YN+L + RM
Sbjct: 653 TTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRM 712
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G PD T+ I ++ +CSS +M A L EL G P + M+N
Sbjct: 713 YASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVCSDILD 772
Query: 165 -------KMIKQGSVPDLETFNSLIETICKSG 189
+++K VP++ T N L+ K G
Sbjct: 773 RAMILTARLLKMAFVPNVVTANLLLSQFYKQG 804
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G P T + L+ +G+++EA E + ++ +KG + + +++K K+G
Sbjct: 502 MVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGD 561
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
V ++ +E G+ DV I +SK+ +++EA+ + ++ G L
Sbjct: 562 VVGAQSLWGEME------RRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKG--LI 613
Query: 232 PSLGQFDDAFCFF 244
P+ ++ C F
Sbjct: 614 PNNFAYNSLICGF 626
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G +PD+ I V+ C +G++ EA EFL ++ +KG +P + + N +I S L
Sbjct: 436 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIA----FNSVIAAYSQAGL 491
Query: 176 ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
E + E GL +T + +S + EA L+ ++E G
Sbjct: 492 E--DKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKG 541
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 53/243 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +I+ GK G +D+A ++ + + V++Y SL H + M
Sbjct: 342 TFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEM 401
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
+R G PD ++ +G+ + + +E+ +GF P RS +++ ++K
Sbjct: 402 MRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFA 461
Query: 169 ------------QGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKIS 203
QG V D +N++I+ CKSG+ +G V T
Sbjct: 462 RETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSV 521
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTH 252
+ ++K +DEA+ L +G +L F +G+ D+A+ EM K
Sbjct: 522 VDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGL 581
Query: 253 PPN 255
PN
Sbjct: 582 TPN 584
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 112/318 (35%), Gaps = 104/318 (32%)
Query: 41 TLISELS-------MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93
TLI LS M M+ V L+ +I F + G +D A+ + ++ +
Sbjct: 66 TLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSN 125
Query: 94 NCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWC-------- 132
++LYN CF + M G VPD T+T ++ C
Sbjct: 126 TFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEA 185
Query: 133 ---------------------------SSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
S+GK EA L+ KG P V + ++
Sbjct: 186 VEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTC 245
Query: 166 MIKQG---------------SVPDLETFNSLIETICKSG-------------ELGLCADV 197
+ K+G ++P+L T+N +I +CK+G E GL +V
Sbjct: 246 LGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNV 305
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVE---------DGHKLFPSL-------GQFDDAF 241
T I I + K +DEA C++ E DG F SL G+ DDA+
Sbjct: 306 RTINIMIDRLCKAQKLDEA----CSIFEGMDYKVCSPDGAT-FCSLIDGLGKQGRVDDAY 360
Query: 242 CFFSEMQIKTHPPNRPVY 259
+ M PN VY
Sbjct: 361 RIYERMLDADQIPNVVVY 378
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-- 106
+ E K + + + S +I+ FGK G +D A V + V +N L
Sbjct: 535 YMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDG 594
Query: 107 -----------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
VCF M P++ T+ IL+N C K +A F QE+ +G P
Sbjct: 595 LVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPN 654
Query: 156 VRSAKQMVNKMIKQGSV----------------PDLETFNSLIETI 185
+ M++ + K G+V PD ++N++IE +
Sbjct: 655 TITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGL 700
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL++ A+EV + + C L YN L F + M
Sbjct: 308 TFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELM 367
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD ++ L+ A C +G++ A E L +L DKG +P + S +++ + K G
Sbjct: 368 VSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKT 427
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
E L E K GL D+ T + +E I+EA R C + + G
Sbjct: 428 K--EALELLDEMTSK----GLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMG 476
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 27/140 (19%)
Query: 70 IIEEFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
++E+ + G + + V + C +Q + L + +H KG PD T+
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMH-------DKGCAPDIVTYN 240
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
+++N C G++ +A EFL+ L G P S A++++ +M +
Sbjct: 241 VVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHK 300
Query: 170 GSVPDLETFNSLIETICKSG 189
G P++ TFN LI +C+ G
Sbjct: 301 GCPPNVVTFNMLISFLCRRG 320
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN-SLHVCFV------------RM 112
T ++++ + G +++A+E ++ C+ + YN L F M
Sbjct: 238 TYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEM 297
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP---------PV 156
KG P+ T +L++ C G + A E L+++ G +NP +
Sbjct: 298 AHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKI 357
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A + V M+ +G PD+ ++N+L+ +C++GE+
Sbjct: 358 HKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEV 392
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 24/125 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVC-----------FVRM 112
T S I + I+ AV F K + LYN+ L +C F M
Sbjct: 448 TYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYM 507
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-KMIKQGS 171
I G +P++ T+TILV G ++EA+E +L +G +VN K++K+GS
Sbjct: 508 ISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRG----------VVNKKLMKKGS 557
Query: 172 VPDLE 176
+ L+
Sbjct: 558 IKMLD 562
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 49/228 (21%)
Query: 76 KHGLIDNAVEVFNKCTAFN------CQQCVLLYNSL----HVCFVRMIRKGFVPDKRTHT 125
+ G +D+A+ + + N C L L R + PD +
Sbjct: 79 RRGELDDALRLVDSLAGLNPPSPAAVGPCAALIKKLCASGRTADARRVLAASGPDVMVYN 138
Query: 126 ILVNAWCSSGKMREAQEFLQELSDK----GFNPPVRS---------AKQMVNKMIKQGSV 172
+V +C +G++ A+ + ++ + +N +R A ++ M ++G +
Sbjct: 139 AMVAGYCGAGQLDAARRLVADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCL 198
Query: 173 PDLETFNSLIETICK-SG------------ELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD+ T+ L+E CK SG + G D+ T + + + +E +++A
Sbjct: 199 PDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEF 258
Query: 220 LCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
L NL G LF + +++DA EM K PPN
Sbjct: 259 LKNLPSYGCEPNTVSYNIVLKGLF-TAERWEDAEKLMEEMAHKGCPPN 305
>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia salsoloides]
Length = 410
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 46/221 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ +N+L ++R
Sbjct: 120 LECGYPASLYFF----NILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIR 175
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M G PD T+++L+N C K+ A E E+ DKG P
Sbjct: 176 LGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVT 235
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
V A ++ +M+ Q DL T+N+LI +CK G+L
Sbjct: 236 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMR 295
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
GL D T I KE ++ AF ++++ +L
Sbjct: 296 MKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRL 336
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A+E++ + + + ++ YN+L + M
Sbjct: 235 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEM 294
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQE----FLQE---LSD-------KGFNPPVRS 158
KG PDK T+T L++ C G + A E +QE L D G RS
Sbjct: 295 RMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRS 354
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M+ G PD T+ +I CK G++
Sbjct: 355 VDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDV 389
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 63/234 (26%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------R 111
+ L L G+H AVE F++ F+C+ +YN++ V R
Sbjct: 148 RALVLAHSSAGRH---QEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNR 204
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G +P+ T+ +L++ C G +A +M ++M+++G
Sbjct: 205 MVSSGCLPNSTTYIVLMDGLCKRGMAVDAL-------------------KMFDEMLERGI 245
Query: 172 VPDLETFNSLIETICKSGELG-----LCA--------DVNTNKISIPAVSKEFMIDEAFR 218
VPD++ + L+ ++C G + LC+ D T + + + K +DEAF
Sbjct: 246 VPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFH 305
Query: 219 LLCNLVEDG-------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L++DG LF + G+FD+ +++EM K+ P+ +Y
Sbjct: 306 RF-ELLQDGGFTLGLIGYSCLIDGLFQA-GRFDEGLSYYTEMLGKSISPDITLY 357
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 28/192 (14%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR--- 122
T +++I K GLID A++VF++ C V+ YN+L + R G + + R
Sbjct: 426 THNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNAL---IDGLYRAGMLEEARMLF 482
Query: 123 -------THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
++ + + ++R+ + + + + V A +++ +I+ G VPD+
Sbjct: 483 HKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDV 542
Query: 176 ETFNSLIETICKS----GELGLCADVNTNKISIPAVSKEFMIDEAFR---------LLCN 222
T+N+LI +CK+ G L L ++ IS ++ +ID +R L N
Sbjct: 543 VTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQN 602
Query: 223 LVEDGHKLFPSL 234
++ G FPSL
Sbjct: 603 ILRSGG--FPSL 612
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ M+ K PD +TIL+ + +G+ ++A L E+ DKGF P ++ +
Sbjct: 342 YTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFD 401
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG- 227
G++ + SL+ + ++ + D T+ I I + K+ +ID+A ++ + E G
Sbjct: 402 VGNI---DRAQSLMSEMLQN---NVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGC 455
Query: 228 -------HKLFPSL---GQFDDAFCFFSEMQIKTHP 253
+ L L G ++A F +M++ +P
Sbjct: 456 HPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGNNP 491
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
+I G VPD T+ L+N C + + A +EL KG +P
Sbjct: 533 IIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHR 592
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A + +++ G P L +N+++ ++C+ +L
Sbjct: 593 ENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKL 628
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN----- 103
W I+LMK ++ + +T +++I + + GL AV FN+ + C + ++
Sbjct: 171 WHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISN 230
Query: 104 -------SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
S F ++ F PD +T LV WC +G++ EA++ +E+ G P V
Sbjct: 231 LSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNV 290
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A + M+ G P+ TFN+L+ K+G
Sbjct: 291 YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAG 339
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 46/214 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRM 112
T S++I+ + G I A +VF C + +N+L HV + +M
Sbjct: 292 TYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQM 351
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNP---------PV 156
+ G PD T+ L+ A C + A + L E++ FN V
Sbjct: 352 KKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDV 411
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT---NKISIPAVSKEFMI 213
A +M +KM++ P+ T+N L+ S + + +K P V+
Sbjct: 412 NGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVN----- 466
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+RLL +F +G +++A+ F EM
Sbjct: 467 --TYRLLVT-------MFCGMGHWNNAYKLFKEM 491
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL++ A+E+ ++ + C L YN + F + M
Sbjct: 294 TFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 353
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G PD ++ L+ A C G++ A E L +L DKG P + S +++ + K G
Sbjct: 354 VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 413
Query: 173 PD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ LE N ++ GL D+ T + +E I+EA + C + + G
Sbjct: 414 EEALELLNEMVTK-------GLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMG 462
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 34/164 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
M+PD+ T + +I G DNA+ V + C V+ Y L C
Sbjct: 148 MEPDTY-----TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSG 202
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
M KG PD T+ ++VN C G++ +A EFL+ L G P S
Sbjct: 203 YKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNI 262
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A++++ +M ++G P++ TFN LI +C+ G
Sbjct: 263 VLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRG 306
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 33/200 (16%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ELM S +P +S ++ + G +D AVE+ ++ C ++ YN++
Sbjct: 350 VELMV--SSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGL 407
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
+ M+ KG PD T++ + + C G++ EA + ++ D G P
Sbjct: 408 TKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNT 467
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
SA + M+ G +P+ T+ LIE + G + ++
Sbjct: 468 VLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAE 527
Query: 201 KISIPAVSKEFMIDEAFRLL 220
S VSK + A RLL
Sbjct: 528 LCSRGVVSKTLVNKGAIRLL 547
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 64/236 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++++ + G +D+A+E ++ C+ P+ ++
Sbjct: 224 TYNVVVNGICQEGRVDDAMEFLKSLPSYGCE----------------------PNTVSYN 261
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------VRSAKQMVNKMIK 168
I++ C++ + +A++ + E+S KG PP V A ++++++ K
Sbjct: 262 IVLKGLCTAERWEDAEKLMAEMSRKG-RPPNVVTFNMLISFLCRRGLVEPAMEILDQIPK 320
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G P+ ++N ++ CK ++ G D+ + + A+ + +D
Sbjct: 321 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDA 380
Query: 216 AFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
A LL L + G + + L G+ ++A +EM K P+ Y+
Sbjct: 381 AVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYS 436
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 31/171 (18%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
D +SV P T + I+ G + A+EV ++ +C V+ Y L R
Sbjct: 196 DRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
M +G PD T+ +LVN C G++ EA +FL ++ G P V
Sbjct: 256 GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315
Query: 157 -RS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
RS A++++ M+++G P + TFN LI +C+ G LG D+
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T +++I + GL+ A+++ K CQ L YN L F RM
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD T+ ++ A C GK+ +A E L +LS KG +P + + +++ + K G
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465
Query: 173 ----------------PDLETFNSLIETICKSGEL 191
PD T++SL+ + + G++
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 36/203 (17%)
Query: 21 IANIVRH----DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGK 76
+ N+V H DI TL R L K +E+++ T +++I + K
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRT 123
G I+NA+ V ++ + V+ YN++ +C RM+++ PD T
Sbjct: 185 AGEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
+TIL+ A C + A + L E+ D+G P V + +VN + K+G +
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301
Query: 173 -----PDLETFNSLIETICKSGE 190
P++ T N ++ ++C +G
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGR 324
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 62/235 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++++ K G +D A++ N + CQ P+ TH
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ----------------------PNVITHN 313
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQ 169
I++ + CS+G+ +A++ L ++ KGF+P V + ++N KM +
Sbjct: 314 IILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQH 373
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+ ++N L+ CK ++ G D+ T + A+ K+ +++A
Sbjct: 374 GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDA 433
Query: 217 FRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+L L G + + L G+ A EM+ K P+ Y+
Sbjct: 434 VEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVCFVR- 111
+KPD++ T S ++ + G +D A++ F++ + + +NS L +C R
Sbjct: 480 LKPDTI-----TYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQ 534
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
MI +G P++ ++TIL+ G +EA E L EL +KG SA+Q
Sbjct: 535 TDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK-SSAEQ 593
Query: 162 MVNKM 166
+ KM
Sbjct: 594 VAGKM 598
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 48/212 (22%)
Query: 45 ELSMWKTIE-LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
E M + IE L + S +P T + ++ K G +++AVE+ N+ ++ C ++
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT 451
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
YN++ + M K PD T++ LV GK+ EA +F E
Sbjct: 452 YNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV----------- 197
+ G P+ TFNS++ +CKS + D
Sbjct: 512 -------------------RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKP 552
Query: 198 --NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I I ++ E M EA LL L G
Sbjct: 553 NETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G VPD T L+ +C GK R+A + L+ L G+
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG-------------------SGA 168
Query: 172 VPDLETFNSLIETICKSGEL 191
VPD+ T+N +I CK+GE+
Sbjct: 169 VPDVITYNVMISGYCKAGEI 188
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 44/202 (21%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RMIR 114
S II+ K L++ A +++++ A V+ YN+L F MI
Sbjct: 154 SAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMIL 213
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---------- 164
K PD T +IL++A C GK A++ + G NP V S M+N
Sbjct: 214 KNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDE 271
Query: 165 ------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
+M+ + VPD T+NSLI+ +CKSG + G ADV T +
Sbjct: 272 AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLD 331
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
A+ K +D+A L + E G
Sbjct: 332 ALCKNQNLDKATALFMKMKERG 353
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
M PD++ T + +I+ K G I +A+ + N+ V+ Y SL +C
Sbjct: 284 MVPDTV-----TYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 338
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F++M +G P T+T L++ C G+++ AQE Q L KG V +
Sbjct: 339 LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTV 398
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
M++ + K+G F+ + K + G + T +I I ++ ++ D+A +LL
Sbjct: 399 MISGLCKEG------MFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLH 452
Query: 222 NLVEDG 227
++ G
Sbjct: 453 EMIAKG 458
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 44/187 (23%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M KG + T +IL+N +C G+M + L ++ G+ P + ++ + +G
Sbjct: 35 QMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKG 94
Query: 171 SVPDL----------------ETFNSLIETICKSGE-------LGLCADVNTN------K 201
V L ++ +L+ +CK+GE L + D +T
Sbjct: 95 EVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYS 154
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQ 248
I + K+ +++EA+ L + D ++FP++ GQ AF EM
Sbjct: 155 AIIDGLCKDKLVNEAYDLYSEM--DAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMI 212
Query: 249 IKTHPPN 255
+K P+
Sbjct: 213 LKNINPD 219
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 31/171 (18%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
D +SV P T + I+ G + A+EV ++ +C V+ Y L R
Sbjct: 196 DRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
M +G PD T+ +LVN C G++ EA +FL ++ G P V
Sbjct: 256 GQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315
Query: 157 -RS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
RS A++++ M+++G P + TFN LI +C+ G LG D+
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T +++I + GL+ A+++ K CQ L YN L F RM
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD T+ ++ A C GK+ +A E L +LS KG +P + + +++ + K G
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465
Query: 173 ----------------PDLETFNSLIETICKSGEL 191
PD T++SL+ + + G++
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 32/154 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I + K G I+NA+ V ++ + V+ YN++ +C RM
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++ PD T+TIL+ A C + +A + L E+ D+G P V + +VN + K+G +
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290
Query: 173 ----------------PDLETFNSLIETICKSGE 190
P++ T N ++ ++C +G
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 62/235 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++++ K G +D A++ N + CQ P+ TH
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ----------------------PNVITHN 313
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQ 169
I++ + CS+G+ +A++ L ++ KGF+P V + ++N KM K
Sbjct: 314 IILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH 373
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+ ++N L+ CK ++ G D+ T + A+ K+ +++A
Sbjct: 374 GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDA 433
Query: 217 FRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+L L G + + L G+ A EM+ K P+ Y+
Sbjct: 434 VEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 37/177 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK----GFNPPVRS---------AKQM 162
G VPD T+ ++++ +C +G++ A L +S +N +RS A ++
Sbjct: 167 GAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEV 226
Query: 163 VNKMIKQGSVPDLETFNSLIETICK-SG------------ELGLCADVNTNKISIPAVSK 209
+++M+++ PD+ T+ LIE C+ SG + G DV T + + + K
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286
Query: 210 EFMIDEAFRLLCNLVEDG-------HKLFP----SLGQFDDAFCFFSEMQIKTHPPN 255
E +DEA + L ++ G H + S G++ DA ++M K P+
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPS 343
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVCFVR- 111
+KPD++ T S ++ + G +D A++ F++ + + +NS L +C R
Sbjct: 480 LKPDTI-----TYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQ 534
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
MI +G P + ++TIL+ G +EA E L EL +KG SA+Q
Sbjct: 535 TDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKR-SSAEQ 593
Query: 162 MVNKM 166
+ KM
Sbjct: 594 VAGKM 598
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 48/212 (22%)
Query: 45 ELSMWKTIE-LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
E M + IE L + S +P T + ++ K G +++AVE+ N+ ++ C ++
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT 451
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
YN++ + M K PD T++ LV GK+ EA +F E
Sbjct: 452 YNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV----------- 197
+ G P+ TFNS++ +CK+ + D
Sbjct: 512 -------------------RMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKP 552
Query: 198 --NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I I ++ E M EA LL L G
Sbjct: 553 TETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G VPD T L+ +C GK R+A + L+ L G+
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEG-------------------SGA 168
Query: 172 VPDLETFNSLIETICKSGEL 191
VPD+ T+N +I CK+GE+
Sbjct: 169 VPDVITYNVMISGYCKAGEI 188
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 34/220 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
+S ++E K G ++ A+ + + F + +YN+L + F RM
Sbjct: 334 AVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRM 393
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G P+ T++IL++ +C GK+ A FL E+ D G P V ++N K G +
Sbjct: 394 GKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDI 453
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
E+ + E I K E V T + + I++A RL + G + P
Sbjct: 454 SAAESL--MAEMINKKLE----PTVVTYTSLMGGYCSKGKINKALRLYHEMT--GKGIVP 505
Query: 233 SL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
S+ G DA F+EM PNR Y
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTY 545
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
I KG + + T+ +L+ +C G+M EA E + + G +P V
Sbjct: 779 ILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDV 838
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
+ A ++ N M ++G PD +N+LI C +GE+G
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMG 874
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 62/234 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + ++ + GLI +AV++F + +N + P++ T+
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFTEMAEWNVK----------------------PNRVTYN 546
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF------- 178
+++ +C G M +A EFL E+ +KG P S + +++ + G + + F
Sbjct: 547 VMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKG 606
Query: 179 ---------NSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFR------- 218
L+ C+ G+ L +C D+ + + V +ID + +
Sbjct: 607 NCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVF 666
Query: 219 --LLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
LL + + G K ++ S+ G F +AF + M + PN Y
Sbjct: 667 LGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M KG VP T T L++ +G +R+A + E+++ P
Sbjct: 498 MTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGN 557
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A + +N+MI++G VPD ++ LI +C +G+
Sbjct: 558 MSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQ 592
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 34/162 (20%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
PD T+ LV C + E + E+ F+P + +V + K+G V
Sbjct: 295 PDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNL 354
Query: 173 ----------PDLETFNSLIETICKS-------------GELGLCADVNTNKISIPAVSK 209
P++ +N+LI+++CK G++GLC + T I I +
Sbjct: 355 VKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCR 414
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
+D A L +++ G K PS+ ++ + C F ++
Sbjct: 415 RGKLDTALSFLGEMIDMGLK--PSVYPYNSLINGHCKFGDIS 454
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
RMI G PD T+T +++ C +++A E +++KG P
Sbjct: 812 RMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAG 871
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLI 182
+ A ++ N+M++QG P+ ET + I
Sbjct: 872 EMGKATELRNEMLRQGLKPNTETSETTI 899
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI +G VP++ T+T ++N C +G + EA E L G + P + ++ +G
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEA-EILCSKMRPGNSVPNQVTYGCFLDILTKG- 765
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V D++ L I K GL A+ T + I ++ ++EA L+ ++ DG
Sbjct: 766 VGDMKKAVELHNAILK----GLLANTATYNMLIRGFCRQGRMEEASELITRMIGDG 817
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 32/189 (16%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
++E+ HG++ +A VF + C++ L + F M ++G D T+T L+N
Sbjct: 342 VVEDMVMHGVVLDAA-VFTTVMSGFCRKGDL--AAARNWFDEMQKRGLAADGVTYTALIN 398
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----------------NKMIKQGSVP 173
C +G+++EA+ LQE+ DKG + + ++ NKM+++ P
Sbjct: 399 GLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP 458
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++ T+ +L + +CK G++ GL ++ T I + K +++A R +
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM 518
Query: 221 CNLVEDGHK 229
++ E G K
Sbjct: 519 IDMDEAGLK 527
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 42/210 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + + + K G + A E+ ++ + + + YNSL +C + M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
G PD T+T ++ A C S ++ A LQE+ DKG P V
Sbjct: 522 DEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV-------------NTNKIS 203
K+++ M+++ P+ T+NSL++ C + ++ NT I
Sbjct: 582 EGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
I K + EA ++E G +L S
Sbjct: 642 IKGHCKARNMKEALYFHSEMIEKGFRLTAS 671
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 52/229 (22%)
Query: 80 IDNAVEVFNKCTAFN-CQQCVLL--------YNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
+D AV++F + N C +LL H F M PD T+ I+V+
Sbjct: 238 LDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHG 294
Query: 131 WCSSGKMREAQEFLQELSDKG--FNP--------------PVRSAKQMVNKMIKQGSVPD 174
+C+ ++ A + L E++ +G NP V A ++V M+ G V D
Sbjct: 295 YCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLD 354
Query: 175 LETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
F +++ C+ G+L GL AD T I + + + EA R+L
Sbjct: 355 AAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 222 NLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + G + + +G+ +AF ++M K PN Y
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTY 463
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 51/200 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
MKPDS+ L+ +I F G +D A+++F K + C+ YN+L F + R
Sbjct: 126 MKPDSI-----LLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGR 180
Query: 115 --------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
+ P+ RT+ IL+ AWC+ K+ EA L
Sbjct: 181 PYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVL---------------- 224
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKIS---------IPAV 207
+KM+ G PD+ T+N++ ++GE L + NK+ I
Sbjct: 225 ---HKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGY 281
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
KE + EA R L + E G
Sbjct: 282 CKEGNMTEALRFLYRMKELG 301
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 41/168 (24%)
Query: 40 LTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV 99
LTL+ E + KPD + T S I+ + GL+DN E+FN + +
Sbjct: 329 LTLMEEFGI-------KPDVV-----TFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDI 376
Query: 100 LLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
Y+ L +VR M + G + T +++ WC++GKM A ++
Sbjct: 377 HAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEK 436
Query: 147 LSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETF 178
+ + G +P +++ A+++++ M ++G VP++ T
Sbjct: 437 MHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTM 484
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 50 KTIELMKPDSLSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
K +E+M D +V P +T +++I+ + ++ A V +K A Q V+ YN++
Sbjct: 186 KLLEMMGQDE-NVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR 244
Query: 108 CF-------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+ ++M P++RT I+++ +C G M EA FL + + G +P
Sbjct: 245 AYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHP 304
Query: 155 -PV---------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
PV + + M + G PD+ TF++++ +G + C ++
Sbjct: 305 NPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEI 363
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 29/156 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+T +II + K G + A+ + +++NSL ++
Sbjct: 272 RTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTL 331
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M G PD T + ++NAW S+G M +E ++ G P +
Sbjct: 332 MEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQ 391
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
R A+ ++ M K G ++ F ++I C +G++
Sbjct: 392 PRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKM 427
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 44/243 (18%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
WK M+ +S T S +IE + K +++A +V + C V+ YN+L
Sbjct: 228 WKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGG 287
Query: 107 VCFVRMIRK-----------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C I + G VPD T+ ++N C G+ +A+ L E+S G P
Sbjct: 288 LCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPN 347
Query: 156 VRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCADVNT 199
V +++ ++QG+ P+ T+++LI +CK G +G + +
Sbjct: 348 VVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILK 407
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF--DDAFCFFSEMQIKTHPPNRP 257
I +M D + NLV +GH L Q ++AF +EM+ PN
Sbjct: 408 QMTKI-----GYMADT---MTYNLVIEGH-----LRQHNKEEAFLLLNEMRKGGISPNVY 454
Query: 258 VYA 260
Y+
Sbjct: 455 TYS 457
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 97/260 (37%), Gaps = 62/260 (23%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC------ 108
+KP++ P +I + + G A E K T N + YNSL +
Sbjct: 484 LKPNAFVYAP-----LISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGK 538
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
+ M+ KGF P+ T+ L++ + +G + +A++ L ++ + G NP
Sbjct: 539 MDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQ 598
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ + M+++G +PD + +I + SG + G
Sbjct: 599 ILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNG 658
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC------- 242
L D I K +++A LL + + G + P + ++ D FC
Sbjct: 659 LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKG--IEPGISCYNALIDGFCKSDDISH 716
Query: 243 ---FFSEMQIKTHPPNRPVY 259
F+ + K PPN Y
Sbjct: 717 ARNIFNSIICKGLPPNCVTY 736
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 19 NHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG 78
N + IV H++ + + +S LS+ + L+ PDSL +I F K
Sbjct: 628 NRLYGIVIHNLSSSGHMQ----AAVSVLSVIEKNGLV-PDSL-----IYGSLISGFCKAA 677
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHT 125
++ AV + ++ + + YN+L F + +I KG P+ T+T
Sbjct: 678 DMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYT 737
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L++ +C +G +R+A + E+ +G P ++ A + +MI +
Sbjct: 738 TLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIAR 797
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G + +FN+L+ CK G+L
Sbjct: 798 GYAI-ISSFNTLVHGFCKRGKL 818
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 55/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T II K G D A + ++ + V++Y++L F+R M
Sbjct: 315 TYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEM 374
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
G P+K T+ L+ C G+M A L++++ G+ +
Sbjct: 375 SAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNK 434
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKIS------IPA 206
A ++N+M K G P++ T++ +I +C+ GE GL + + + P
Sbjct: 435 EEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPL 494
Query: 207 VSKEFMIDEAFRLLCNLVEDGHK--LFPSL-------------GQFDDAFCFFSEMQIKT 251
+S + + +F L C ++ + L P L G+ D+A ++ EM K
Sbjct: 495 ISG-YCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKG 553
Query: 252 HPPNRPVYA 260
PN Y
Sbjct: 554 FQPNDFTYG 562
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 51/175 (29%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVCFV--RM 112
T + +I+ + K G I +A++++N+ +Y+ L F+ M
Sbjct: 735 TYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEM 794
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--------- 163
I +G+ +T LV+ +C GK++E +FL + DK P + + + +V
Sbjct: 795 IARGYAIISSFNT-LVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKL 853
Query: 164 ---------------------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
MI QG VP L+ +++I++ CK G L
Sbjct: 854 SEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVP-LDVIHNMIQSHCKQGYL 907
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 32/189 (16%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
++E+ HG++ +A VF + C++ L + F M ++G D T+T L+N
Sbjct: 342 VVEDMVMHGVVLDAA-VFTTVMSGFCRKGDL--AAARNWFDEMQKRGLAADGVTYTALIN 398
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----------------NKMIKQGSVP 173
C +G+++EA+ LQE+ DKG + + ++ NKM+++ P
Sbjct: 399 GLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP 458
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++ T+ +L + +CK G++ GL ++ T I + K +++A R +
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM 518
Query: 221 CNLVEDGHK 229
++ E G K
Sbjct: 519 IDMDEAGLK 527
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 42/210 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + + + K G + A E+ ++ + + + YNSL +C + M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
G PD T+T ++ A C S ++ A LQE+ DKG P V
Sbjct: 522 DEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV-------------NTNKIS 203
K+++ M+++ P+ T+NSL++ C + ++ NT I
Sbjct: 582 EGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
I K + EA ++E G +L S
Sbjct: 642 IKGHCKARNMKEALYFHSEMIEKGFRLTAS 671
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 52/229 (22%)
Query: 80 IDNAVEVFNKCTAFN-CQQCVLL--------YNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
+D AV++F + N C +LL H F M PD T+ I+V+
Sbjct: 238 LDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHG 294
Query: 131 WCSSGKMREAQEFLQELSDKG--FNP--------------PVRSAKQMVNKMIKQGSVPD 174
+C+ ++ A + L E++ +G NP V A ++V M+ G V D
Sbjct: 295 YCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLD 354
Query: 175 LETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
F +++ C+ G+L GL AD T I + + + EA R+L
Sbjct: 355 AAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 222 NLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + G + + +G+ +AF ++M K PN Y
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTY 463
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 47/210 (22%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A N Q V L + V GF PD T+T L++A+C S +M A E L+++ D
Sbjct: 409 CKAGNIDQAVKLMKDMEVA-------GFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLD 461
Query: 150 KGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-- 191
+ P V ++++ M+++G +P+ T+NSLI+ C +
Sbjct: 462 RELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRA 521
Query: 192 ------GLCA-----DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL---------- 230
G+CA D NT I I K + EA+ L ++V G L
Sbjct: 522 TTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIK 581
Query: 231 -FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F +F +A F +M+ + +R +Y
Sbjct: 582 GFYKRKKFLEARELFEQMRREGLVADREIY 611
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKC------------TAFNCQQC----VLLYNSLHVCFVRMI 113
+I+ F K G + +A +F++ TA C C V+ + L F M+
Sbjct: 264 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKL---FHEMV 320
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
K PD+ T+T L++ +C GKM+EA ++ G P + + + + + K G V
Sbjct: 321 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEV- 379
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-HKLFP 232
+T N L+ +C+ GL ++ T + + K ID+A +L+ ++ G H
Sbjct: 380 --DTANELLHEMCRK---GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAV 434
Query: 233 SLGQFDDAFCFFSEMQIKTH 252
+ DA+C EM ++ H
Sbjct: 435 TYTTLMDAYCKSREM-VRAH 453
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M KG VPD T+ IL+ C + M+EA +++ KGFN V S
Sbjct: 529 MCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKK 588
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A+++ +M ++G V D E +N + G++ L
Sbjct: 589 FLEARELFEQMRREGLVADREIYNIFADINYDEGKMEL 626
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KG P+ T+ ++ C +GK+ EA+ L+E+ +G P V S
Sbjct: 217 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSS 276
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL---------GLCADVNTNKISIPAV-- 207
A ++ ++M K+ PD T+ ++I +C++G + +C + ++++ A+
Sbjct: 277 AYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALID 336
Query: 208 --SKEFMIDEAFRLLCNLVEDG 227
KE + EAF L +++ G
Sbjct: 337 GYCKEGKMKEAFSLHNQMLQMG 358
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 35/169 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ + PD RT++ L++ +GK++ A E L E +KG P V + +++ KQG
Sbjct: 612 MLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGG 671
Query: 172 V----------------PDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEF 211
+ P++ T+N+LI +CK+GE+ L + ++ AV+
Sbjct: 672 IGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYAT 731
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID + G AF F EM +K PP+ VY+
Sbjct: 732 IIDG---------------YCKSGNLSKAFRLFDEMTLKGVPPDSFVYS 765
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 32/150 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HVCFVR 111
MK +L T +II +HG I++A VF + + ++Y +L HV R
Sbjct: 437 MKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGR 496
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M +KG PD + ++ C S KM EA+++L E
Sbjct: 497 FQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVE--------------- 541
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL 191
MI++G P++ T+ +LI CKSGE+
Sbjct: 542 ----MIERGLKPNVYTYGALIHGYCKSGEM 567
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRK 115
L+I+ + K GL D AV F +L N L ++ M+
Sbjct: 171 LLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEA 230
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
+ D T+T L+NA +G +E + L E+ +KG +P + + ++ + + G V +
Sbjct: 231 NVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEA 290
Query: 176 ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
L++ + GL ADV T I I K+ EA +L + G K
Sbjct: 291 FELKKLMD------KKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLK 338
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +KG V D T++IL++ + + EA+ L+E+ KG P + +++ ++QG
Sbjct: 297 MDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGD 356
Query: 172 VPD----------------LETFNSLIETICKSGEL 191
+ L T+N+L++ +CK G++
Sbjct: 357 SGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDM 392
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 53/225 (23%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112
+LM L T S++I+ FGK +CT + M
Sbjct: 295 KLMDKKGLVADVFTYSILIDGFGKQ----------KRCT------------EAKLMLEEM 332
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
KG P +T L++ + G EA +E+ +G +N V+
Sbjct: 333 FSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDM 392
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS--IPAVSKEFMID 214
A ++N+MI G PD +T+N++IE G + NT+++ + + K ++
Sbjct: 393 EKADALLNEMIMVGIKPDTQTYNNMIE--------GYLKEQNTSRVKDLLSEMKKSNLVP 444
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
A+ C ++ +G G +DA F M PN +Y
Sbjct: 445 TAYT--CGMIING---LCRHGSIEDASRVFEIMVSLGVKPNAVIY 484
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 47/226 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV----LLYNSL--HVC----------- 108
T + II F K G I A ++ + CQ+ + + YN+L +C
Sbjct: 658 TYNSIISGFCKQGGIGKAFQLHE----YMCQKGISPNIITYNALINGLCKAGEIERAREL 713
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F + KG + T+ +++ +C SG + +A E++ KG P +++ K
Sbjct: 714 FDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRK 773
Query: 169 QGSV---------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
+G+ + N+L++ CKSG++ + N++ V K
Sbjct: 774 EGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKV-----IEANQLLEDMVDKHVKP 828
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
D + ++ D H G +A FF +MQ + PN Y
Sbjct: 829 D---HVTYTILIDYH---CKTGFLKEAEQFFVDMQKRNLMPNALTY 868
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVR 157
M+ K PD T+TIL++ C +G ++EA++F ++ + G+N R
Sbjct: 821 MVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGR 880
Query: 158 SAKQ--MVNKMIKQGSVPDLETFNSLIETICKSGE 190
++ + ++MI + PD T++ +I+ K G+
Sbjct: 881 RSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGD 915
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 42/215 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++++ K G ++ A+ + + + V++Y++L F M
Sbjct: 47 TYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEM 106
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ KG P+ ++ L+N +C G REA L ++++G P V
Sbjct: 107 LEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRA 166
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
R A + + M ++G P T+N LI +CK G E G +V +
Sbjct: 167 RKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTL 226
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
I + +DEA +L +L+EDG+ + P + F+
Sbjct: 227 IMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFN 261
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 99/292 (33%), Gaps = 94/292 (32%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
MK L V S +I F G +D +F++ V++Y+ L F +
Sbjct: 71 MKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGL 130
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M +G PD T+T ++ C G+ R+A + +++KG P +
Sbjct: 131 WREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNV 190
Query: 162 MVNKMIKQGSV------------------------------------------------- 172
++N + K+G +
Sbjct: 191 LINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDG 250
Query: 173 ----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
PD+ TFN++I+ +CK G L G ++ T I I K +ID+
Sbjct: 251 NYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDK 310
Query: 216 AFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEMQIKTHPP 254
A L + + G L PS + D FC FS M+I P
Sbjct: 311 AMELWKRVHKLG--LVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSP 360
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN-------SLHVC------FVRM 112
T ++I E+ K G+ID A+E++ + Y+ +H+ F RM
Sbjct: 294 TCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRM 353
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
G P + L+ + C + +A+ QE+ + P +
Sbjct: 354 KISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDI 413
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
SAK+++N M + G PD T++S I + K G++
Sbjct: 414 HSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQM 448
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 42/193 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTA-------FNCQQCVLLY------NSLHVCFVRM 112
T + +I+ K G +D AVE+++ F C + Y + + R+
Sbjct: 259 TFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRV 318
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ G VP T++++++ +C + A+ + G +P +
Sbjct: 319 HKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSL 378
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
A+++ +M + PD +FN +I+ K+G ++GL D T
Sbjct: 379 EQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSF 438
Query: 204 IPAVSKEFMIDEA 216
I +SK ++EA
Sbjct: 439 INRLSKLGQMEEA 451
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M + G PD T++ +N G+M EA+ + G P
Sbjct: 423 MQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDE 482
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ ++ +M G + DLE NS++ +C S E
Sbjct: 483 IEEVINLLRQMADMGVILDLEITNSILTFLCNSAE 517
>gi|147819559|emb|CAN76564.1| hypothetical protein VITISV_029137 [Vitis vinifera]
Length = 449
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 31/215 (14%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVC------------FVRMIRK- 115
+I +GK G+ ++A ++F++ NC++ V+ +N+L C F + R
Sbjct: 211 LITLYGKAGMFEHAHKLFDEMPKLNCERTVMSFNALLSACVNSKKFDKIDGFFQELPRNL 270
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G VPD ++ ILVNA+C G + A L E+ G P + + ++N + GS D
Sbjct: 271 GIVPDVVSYNILVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNVFYQSGSNADG 330
Query: 176 ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-------- 227
E L++ + + +V + + V E + EA L+ + G
Sbjct: 331 EKIWDLMK------KNNVAPNVRSYNAKLRGVISENRMSEAVNLIDEMKTSGIKPDVFTL 384
Query: 228 ---HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K F + G ++A + SE+ I PP R Y
Sbjct: 385 NSLMKGFCNAGNLEEAKRWHSEIAINELPPVRATY 419
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 40/153 (26%)
Query: 57 PDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
P +L + P +S +++ F + G +D+A+ V ++ M +
Sbjct: 267 PRNLGIVPDVVSYNILVNAFCEMGSLDSALSVLDE----------------------MEK 304
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
G PD T L+N + SG + ++ + P VRS
Sbjct: 305 VGLEPDLITFNTLLNVFYQSGSNADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSE 364
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++++M G PD+ T NSL++ C +G L
Sbjct: 365 AVNLIDEMKTSGIKPDVFTLNSLMKGFCNAGNL 397
>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Vitis vinifera]
Length = 450
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 107/269 (39%), Gaps = 40/269 (14%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIE 72
DY H+++ H I L ++W ++ M+ L P+T ++I E
Sbjct: 92 DYHPTYAHVSSSFDHAIDIAGRLRDYK-------TLWTLVDRMRTRRLGPNPKTFAIITE 144
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR------KGFVPDKRTHTI 126
+ G D A+++F C Q + +N++ + R K F + I
Sbjct: 145 RYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGRFRI 204
Query: 127 LVNAWCSSGKMREAQEFLQELSDK----------------GFNPPVRSAKQMVNKMIKQG 170
L+ + +G+++EA EF ++ + G VR A+++ N+MI +G
Sbjct: 205 LLKGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEG 264
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+P + T+N+ I+ +CK + V + + + R LC+
Sbjct: 265 VLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCH-------- 316
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+G+ + A F + M+ PN +Y
Sbjct: 317 ---VGRMEKAMEFMARMKDDECEPNVQIY 342
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 22/195 (11%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
W+ MK + T + ++ FG G + A VFN+ V YN+
Sbjct: 219 WEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQV 278
Query: 107 VC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C F M+RKG++P+ T+ +++ C G+M +A EF+ + D P
Sbjct: 279 LCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPN 338
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAV---SKEFM 212
V Q+ N +I+ D E + K G+ +++T I I A+ K
Sbjct: 339 V----QIYNVVIRY--FCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDY 392
Query: 213 IDEAFRLLCNLVEDG 227
+ A +LL +VE G
Sbjct: 393 LLTAGKLLIEMVERG 407
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 45/188 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I F + G + A+++ N C + YN L R M
Sbjct: 531 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 590
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG P+ + IL+N C +G ++ A EFL++ MI +G
Sbjct: 591 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRD-------------------MIHRGLT 631
Query: 173 PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD+ T+NSLI +CK+G G+C D T I KE M D+A L
Sbjct: 632 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 691
Query: 220 LCNLVEDG 227
L V+ G
Sbjct: 692 LSRGVDSG 699
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 99/240 (41%), Gaps = 54/240 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCT-AFNCQQCVLLYNSLHVCFVR-------------MIRK 115
+I + G +D A V ++ + C + YN+L + + M K
Sbjct: 359 LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIK 418
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSA 159
G P+ T+TIL++ +C G++ EA+ L E+S KG + V+ A
Sbjct: 419 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 478
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCAD-----VNTNKISIPAVSKE 210
M M +G PD+ TFNSLI +CK + LGL D V N I+ +
Sbjct: 479 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 538
Query: 211 FM----IDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPN 255
F+ + EA +L+ +++ G + L +L G + F +M K PN
Sbjct: 539 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 598
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ +GF P+ T+ +L++ C GK+ EA+ L ++ NP V ++N + +G
Sbjct: 312 RMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVLFNTLINGYVSRG 367
Query: 171 SV-----------------PDLETFNSLIETICKSGEL-------------GLCADVNTN 200
+ PD+ T+N+LI +CK G L G +V T
Sbjct: 368 RLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITY 427
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
I I KE ++EA +L + G L
Sbjct: 428 TILIDRFCKEGRLEEARNVLDEMSGKGLAL 457
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I+ F K G ++ A V ++ + + YN L +C F M
Sbjct: 426 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 485
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
KG PD T L+ C K EA Q++ +G +N + +
Sbjct: 486 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAM 545
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG--ELGLC-------ADVNTNKIS---- 203
A ++VN M+ +G D T+N LI+ +C++G E GL +N N IS
Sbjct: 546 QEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNIL 605
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTH 252
I + + I A L +++ G + L L G+ +A F ++Q++
Sbjct: 606 INGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 665
Query: 253 PPNRPVY 259
P+ Y
Sbjct: 666 CPDAITY 672
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 34/173 (19%)
Query: 49 WKTIEL----MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF-NKCTAFNCQQCVLLYN 103
+KTI+ MK + + LI++ +G+ GL A + + ++C+ YN
Sbjct: 127 FKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYN 186
Query: 104 S-LHV------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
L V F M+ KG P T +++ A C ++ A L++++
Sbjct: 187 VVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRH 246
Query: 151 GFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICK 187
G P + +++ + K G V PD+ TFN I +CK
Sbjct: 247 GCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK 299
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 88/219 (40%), Gaps = 62/219 (28%)
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWC 132
+ G+ G++ +AV +N C V + + +M+R+ PD T IL++A C
Sbjct: 220 QIGERGILLDAV-TYNSLIDGCCS--VGRWQEVTQLLTKMVRENVDPDDYTFNILIDALC 276
Query: 133 SSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLE 176
G++ EAQ L +S +G P V A+++ N+M+K+G PD+
Sbjct: 277 KEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVL 336
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA---FRLLCNLVEDGHKLFPS 233
+N LI+ CK+ M+DEA F+ LCN L P+
Sbjct: 337 NYNVLIDGYCKTK----------------------MVDEAMVLFKELCN-----KNLVPT 369
Query: 234 LGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
+ ++ D C EM PP+ Y
Sbjct: 370 IASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTY 408
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I+ K G I A+ V + ++ YN++ C F RM
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
++ G PD + +L+N +C + + EA +E+ K P + S +++ + G +
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
P ++ L++ +C SG+ DV T I + A K D+A L +VE
Sbjct: 527 PHVQ---ELLDEMCDSGQ---SPDVITYNILLDAFCKTQPFDKAISLFRQIVE 573
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I+ K G I A V + + ++ YN+L F RM
Sbjct: 267 TFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRM 326
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++G PD + +L++ +C + + EA +EL +K P + S +++ + G +
Sbjct: 327 VKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI 386
Query: 173 ----------------PDLETFNSLIETICKSGEL 191
PD+ T+N LI+ +CK G +
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRI 421
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 34/195 (17%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDN 82
+IV ++ E +R N+ EL ++PD L+ +++I+ + K ++D
Sbjct: 299 DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLN-----YNVLIDGYCKTKMVDE 353
Query: 83 AVEVFNKCTAFNCQQCVLLYNSL-----------HV--CFVRMIRKGFVPDKRTHTILVN 129
A+ +F + N + YNSL HV M PD T+ IL++
Sbjct: 354 AMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILID 413
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
A C G++ EA L + KG P V AK + N+M+K G P
Sbjct: 414 ALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEP 473
Query: 174 DLETFNSLIETICKS 188
D+ +N LI CK+
Sbjct: 474 DILNYNVLINGYCKT 488
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 24/119 (20%)
Query: 100 LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
+++ +L C ++ +G++ D+ T+ L+N +G+++ A LQE
Sbjct: 140 MIFKALDFC-QNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQE------------- 185
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG----ELGLCADVNTNKISIPAVSKEFMID 214
M K P+L +++LI+ +CK G LGLC+ + I + AV+ +ID
Sbjct: 186 ------MEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLID 238
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN--- 164
CF RM+R P L+ A G A +L KG +P + + ++N
Sbjct: 42 CFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYF 101
Query: 165 -------------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
++K G P+L TFN++I C +G + D N +++ +
Sbjct: 102 HQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN-----LLAQGY 156
Query: 212 MIDE-AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ D+ + L N + GQ A EM+ + PN +Y+
Sbjct: 157 LFDQFTYGTLINGLSKN-------GQIKAALHLLQEMEKSSVQPNLVMYS 199
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
+ R I +G PD T+ +V+ C K++ A++ L+ L G +P V++ ++N +
Sbjct: 565 ISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINAL 624
Query: 167 IKQGS 171
K GS
Sbjct: 625 CKDGS 629
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL---SDKGF----NPPVRSAKQ-- 161
RM+ +GF P+ T+ +L+N C GK+ EAQ L ++ +D F N V+S +
Sbjct: 303 RMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDE 362
Query: 162 ----MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+ +KMIK G PD+ TFN+LI +CK G +G D+
Sbjct: 363 ANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDM 402
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 89/230 (38%), Gaps = 62/230 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I K GL+ +AV++ N +A C P+ T+T
Sbjct: 382 TFNTLIHGLCKKGLMGSAVDMVNDMSANGC----------------------TPNLITYT 419
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVNKMIKQ 169
L++ +C ++ EA L E+S KGF N V A M+ +M +
Sbjct: 420 TLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDK 479
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ TFN+LI +CK G+ A+ T I A + I EA
Sbjct: 480 GCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEA 539
Query: 217 FRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+L+ +++ G K F LG + A F EM K P+
Sbjct: 540 LKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPS 589
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I F + G I A+++ N C + YN L F + M
Sbjct: 522 TYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEM 581
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+RK VP + +L+N C GK+ A E L+++ +G P V + ++N + K G++
Sbjct: 582 VRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNI 641
Query: 173 ----------------PDLETFNSLIETICKSG 189
PD T+N+LI C++G
Sbjct: 642 REAFNLFNKLQAEGIQPDAITYNTLICWHCRAG 674
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+ KG +P T +++ A C ++ A L++++ G P
Sbjct: 196 FYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSK 255
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
V A +++ +M G +PD++TFN +I +C+
Sbjct: 256 RDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCR 290
>gi|296090624|emb|CBI41008.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 113/286 (39%), Gaps = 57/286 (19%)
Query: 25 VRHDIYAERTLNRL--NLTLISELSMWKTIELMKPDSLSVFPQT-----LSLIIEE---- 73
V DIY ER L RL SEL ++T + +++ + I+EE
Sbjct: 37 VFKDIYRERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKY 96
Query: 74 ---------------FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR---- 114
+GK G+ D+A +VF++ C++ VL +N+L V +
Sbjct: 97 KDISREGFAVRLISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKI 156
Query: 115 ----------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
G VPD ++ I+VNA+C G + A L E+ G P + + ++N
Sbjct: 157 DGFFQELPGNLGVVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLN 216
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ GS D E L++ + + +V + + V E + EA L+ +
Sbjct: 217 AFYQNGSYADGEKIWDLMK------KNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMK 270
Query: 225 EDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G K F + G ++A ++SE+ PP R Y
Sbjct: 271 TSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATY 316
>gi|359496212|ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 31/211 (14%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR--------------KGFVP 119
+G G+ D+A ++F++ NC++ V+ +N+L V + G VP
Sbjct: 102 YGTAGMFDHAHKLFDELPKLNCERTVMSFNALLSACVNSKKFDKIDGFFQELPGNLGIVP 161
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
D ++ ILVNA+C G + A L E+ G P + + ++N + GS D E
Sbjct: 162 DVVSYNILVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIW 221
Query: 180 SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------H 228
L++ + + +V + + V E + EA L+ + G
Sbjct: 222 DLMK------KNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLM 275
Query: 229 KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K F + G ++A ++SE+ PP R Y
Sbjct: 276 KGFCNAGNLEEAKRWYSEIARNELPPVRATY 306
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 40/153 (26%)
Query: 57 PDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
P +L + P +S +++ F + G +D+A+ V ++ M +
Sbjct: 154 PGNLGIVPDVVSYNILVNAFCEMGSLDSALSVLDE----------------------MEK 191
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
G PD T L+NA+ +G + ++ + P VRS
Sbjct: 192 VGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSE 251
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +++++M G PD+ T NSL++ C +G L
Sbjct: 252 AVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNL 284
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 42/224 (18%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K E M + +S +++I+ + K G +D A ++ +
Sbjct: 28 YKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEE------------------- 68
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
M+ G P T+ L+NA+C KM+EA E + +++KGF P V + +++ + K
Sbjct: 69 ---MVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125
Query: 169 QGSVPD-LET-FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
G V + LE F+ +IE C + + A +N + K+ I+ A++LL +
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALIN-------GLCKDENIERAYKLLEEMASK 178
Query: 227 GH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ +G+ +A FF M + + P+ Y
Sbjct: 179 GYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAY 222
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 33/182 (18%)
Query: 34 TLNRLNLTLISELSMWKTIELMKPDSLSVFPQ---TLSLIIEEFGKHGLIDNAVE-VFNK 89
T N L E M + +EL K + F T S II K G + A+E +F+K
Sbjct: 80 TYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHK 139
Query: 90 CTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGK 136
C + YN+L + M KG+VPD T+ +++ C GK
Sbjct: 140 MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGK 199
Query: 137 MREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS----------------VPDLETFNS 180
+ EA++F + +G++P V + +++ + K+G +PD T+NS
Sbjct: 200 VSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNS 259
Query: 181 LI 182
++
Sbjct: 260 IL 261
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY-------------N 103
PD++ T + I+ + +D A E+F K A C Y +
Sbjct: 252 PDTV-----TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVD 306
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
H M + G VPD T+ IL++ C + + +A E + D G P + S
Sbjct: 307 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVL 366
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A+ + ++MI++ VPD+ TFN L++ +CK+G+L D+
Sbjct: 367 NGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDL 416
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY----------NSLH---VCFVRM 112
T +++++ K L+D A E+F+ C ++ Y N +H V F RM
Sbjct: 326 TYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM 385
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
I + VPD T IL++ C +GK+ EA++ L +++ G P + ++N + KQG
Sbjct: 386 IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQG 443
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 41/182 (22%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQM 162
P++ T +++ ++C GK+R+ + +++ D G +P V A ++
Sbjct: 6 PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65
Query: 163 VNKMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNTNKISIPAVSK 209
+M+ G P + T+NSL+ CK E G DV T I + K
Sbjct: 66 YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125
Query: 210 EFMIDEAFRLLCN-LVEDG--------HKLFPSLGQ---FDDAFCFFSEMQIKTHPPNRP 257
+ EA +L + ++E G + L L + + A+ EM K + P+
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185
Query: 258 VY 259
Y
Sbjct: 186 TY 187
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 47/239 (19%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
+K +E M T + I+ + G + A + F+ + V+ YN L
Sbjct: 169 YKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDA 228
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
F +I KG++PD T+ ++ M EA+E +++ G P
Sbjct: 229 LYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPN 288
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG------EL-- 191
V A +++ +M K G+VPD+ T+N L++ +CK+ EL
Sbjct: 289 GATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 348
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
G D+ + + + + K + +A L ++E KL P + F+ D C
Sbjct: 349 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIE--RKLVPDVVTFNILMDGLC 405
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 101/250 (40%), Gaps = 52/250 (20%)
Query: 47 SMWKTIELMKPDSLSVFPQ----TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
++WK + D + PQ T S II F + G I + + F+C+ Y
Sbjct: 39 NVWKLFK----DVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAY 94
Query: 103 N-SLHVCFVR------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
N ++ C +R MI +G P T ++NA+C G + EA++ L +
Sbjct: 95 NIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKE 154
Query: 150 KGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--- 190
GF+P + A + +M K+G PD TFN L+ K G
Sbjct: 155 MGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREED 214
Query: 191 ----------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDA 240
LGL D + IS+ + +DEA L +++E G L PS+ F+
Sbjct: 215 GDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKG--LSPSIIAFNSV 272
Query: 241 FCFFSEMQIK 250
+S+ ++
Sbjct: 273 IAAYSQAGLE 282
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 64/242 (26%)
Query: 17 AVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTL--SLIIEEF 74
+VN++A V D + +R ++ S+W +E +FP + S I+
Sbjct: 333 SVNNMAFTVLLDKFFKRG------DVVGAQSLWGEME-----RRGIFPDVVAFSAFIDGL 381
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
K GL++ A VF + M+RKG +P+ + L+ +C
Sbjct: 382 SKQGLVEEAYNVF----------------------LEMLRKGLIPNNFAYNSLICGFCKC 419
Query: 135 GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETF 178
GK+ EA + + + +G P + + ++ + KQG + PD+ T+
Sbjct: 420 GKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITY 479
Query: 179 NSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
N+LI CK+ ++ G D+ T I I ++ A +L LV
Sbjct: 480 NTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVS 539
Query: 226 DG 227
G
Sbjct: 540 AG 541
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G P T + L+ +G+++EA E + ++ +KG + + +++K K+G
Sbjct: 292 MVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGD 351
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
V ++ +E G+ DV I +SK+ +++EA+ + ++ G L
Sbjct: 352 VVGAQSLWGEME------RRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKG--LI 403
Query: 232 PSLGQFDDAFCFF 244
P+ ++ C F
Sbjct: 404 PNNFAYNSLICGF 416
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G +PD+ I V+ C +G++ EA EFL ++ +KG +P + + N +I S L
Sbjct: 226 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIA----FNSVIAAYSQAGL 281
Query: 176 ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
E + E GL +T + +S + EA L+ ++E G
Sbjct: 282 E--DKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKG 331
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 44/229 (19%)
Query: 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ ++ + PQ +++ F ++ AV+V ++ + C+ ++ L
Sbjct: 148 AVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFGCL 207
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+R + P + T L+ WC GK+ EA+ L ++ D G
Sbjct: 208 LDALRKNGSVKEAASLFEELRYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIE 267
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------ 191
P + A ++ +M ++G P+ ++ LI+++CK L
Sbjct: 268 PDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRV 327
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
G AD+ T I K I + LL +++ GH FP+
Sbjct: 328 FVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGH--FPN 374
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 29/160 (18%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
FV M R G D T++ L++ +C GK++ E L E+ +G P
Sbjct: 328 FVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEK 387
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ K++VN+M K G PDL +N++I CK GE+ GL ++T
Sbjct: 388 KEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDT 447
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDD 239
I I ++ + EA +V G P G +
Sbjct: 448 FVIMINGFLEQGCLVEACEYFKEMVGRGLFAAPQYGTLKE 487
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVCFV--RM 112
T + +I F I+ A+E+F++ C ++Y +L FV +M
Sbjct: 488 TYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKM 547
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
GF PD + +L+N +C K+ EA E L+E+ + G P
Sbjct: 548 KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDF 607
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+A +++ KM+K+G VP + T+ +LI C +G L + + S V +I
Sbjct: 608 STAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVI--- 664
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ +L N + + Q D A +M++K PN
Sbjct: 665 YNILINSLCRKN-------QVDLALSLMDDMKVKGVKPN 696
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 94/237 (39%), Gaps = 67/237 (28%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
TL+ +++ KHG I+ AVE FN+ M KG + T+T
Sbjct: 453 TLNTLVDGMCKHGRINGAVEFFNE----------------------MQGKGLKGNAVTYT 490
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L+ A+C+ + +A E E+ + G +P + A +++KM +
Sbjct: 491 ALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEA 550
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ +FN LI C+ +L G+ D T I SK A
Sbjct: 551 GFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTA 610
Query: 217 FRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTH-PPNRPVY 259
RL+ +V++G L P++ G D+A F +M + PPN +Y
Sbjct: 611 HRLMKKMVKEG--LVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIY 665
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 36/220 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNSL--HVCFVRMIRKGF- 117
T ++I K +D A+EVF K F + V+ YN+L +C V +G
Sbjct: 342 TFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLG 401
Query: 118 -----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
+P+ T+ L++ +C + + A+E +++ G P V + +V+ M
Sbjct: 402 LVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGM 461
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
K G + N +E + GL + T I A I++A L ++E
Sbjct: 462 CKHGRI------NGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA 515
Query: 227 G--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPN 255
G + L L G+ D A S+M+ P+
Sbjct: 516 GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPD 555
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 32/189 (16%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
++E+ HG++ +A VF + C++ L + F M ++G D T+T L+N
Sbjct: 342 VVEDMVMHGVVLDAA-VFTTVMSGFCRKGDL--AAARNWFDEMQKRGLAADGVTYTALIN 398
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----------------NKMIKQGSVP 173
C +G+++EA+ LQE+ DKG + + ++ NKM+++ P
Sbjct: 399 GLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP 458
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++ T+ +L + +CK G++ GL ++ T I + K +++A R +
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM 518
Query: 221 CNLVEDGHK 229
++ E G K
Sbjct: 519 IDMDEAGLK 527
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 42/210 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + + + K G + A E+ ++ + + + YNSL +C + M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
G PD T+T ++ A C S ++ A LQE+ DKG P V
Sbjct: 522 DEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV-------------NTNKIS 203
K+++ M+++ P+ T+NSL++ C + ++ NT I
Sbjct: 582 EGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
I K + EA ++E G +L S
Sbjct: 642 IKGHCKARNMKEALYFHSEMIEKGFRLTAS 671
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 52/229 (22%)
Query: 80 IDNAVEVFNKCTAFN-CQQCVLL--------YNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
+D AV++F + N C +LL H F M PD T+ I+V+
Sbjct: 238 LDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHG 294
Query: 131 WCSSGKMREAQEFLQELSDKG--FNP--------------PVRSAKQMVNKMIKQGSVPD 174
+C+ ++ A + L E++ +G NP V A ++V M+ G V D
Sbjct: 295 YCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLD 354
Query: 175 LETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
F +++ C+ G+L GL AD T I + + + EA R+L
Sbjct: 355 AAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 222 NLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + G + + +G+ +AF ++M K PN Y
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTY 463
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 91/232 (39%), Gaps = 62/232 (26%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
S+II+ KHG +DNA +FN+ M KG + T+ IL
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNE----------------------MEMKGITTNIITYNIL 304
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGS 171
+ +C++G+ + + L+++ + NP V R A+++ +MI +G
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 364
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
PD T+ SLI+ CK L G ++ T I I K ID+
Sbjct: 365 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLE 424
Query: 219 L-----LCNLVEDGHKL------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L L +V D F LG+ + A F EM + PPN Y
Sbjct: 425 LFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 39/185 (21%)
Query: 95 CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C++ L ++++ ++I+ G+ P+ T + L+N C G++ EA E + + + G P
Sbjct: 136 CRKLCLAFSAMG----KIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 191
Query: 155 PVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGELGLCADV- 197
+ + +VN KM++ G P+ T+ ++ +CKSG+ L ++
Sbjct: 192 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 251
Query: 198 ---NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
I + AV +ID LC H G D+AF F+EM++K
Sbjct: 252 RKMEERNIKLDAVKYSIIIDG----LCK-----H------GSLDNAFNLFNEMEMKGITT 296
Query: 255 NRPVY 259
N Y
Sbjct: 297 NIITY 301
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 41/222 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ ++LM +T +++I + K ID+ +E+F K
Sbjct: 389 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK-------------------- 428
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M +G V D T+ L+ +C GK+ A+E QE+ + P + + K +++ +
Sbjct: 429 --MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 486
Query: 170 G-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL----V 224
G S LE F E I KS + D+ I I + +D+A+ L C+L V
Sbjct: 487 GESEKALEIF----EKIEKS---KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGV 539
Query: 225 EDGHKLFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G K + + G +A F +M+ H P+ Y
Sbjct: 540 KPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTY 581
>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 53/244 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF---------- 117
+I K G A+ + K C+ V++YN++ +C +++R F
Sbjct: 160 LINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKR 219
Query: 118 -VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
P+ T+T L+ +C G++ +A L E+ K NP V R AK
Sbjct: 220 VFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAK 279
Query: 161 QMVNKMIKQGSVPDLETFNSLIET---ICKSG----------ELGLCADVNTNKISIPAV 207
+V M+K+G PD+ T+N+L++ + ++G ++G+ DV++ + I +
Sbjct: 280 SLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGL 339
Query: 208 SKEFMIDEAFRLL-----CNLVED---GHKLFPSL---GQFDDAFCFFSEMQIKTHPPNR 256
SK M+DEA L N++ D L L G+ + A + EM + PPN
Sbjct: 340 SKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNV 399
Query: 257 PVYA 260
Y
Sbjct: 400 ITYT 403
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
NS F ++++ G+ PD T+T L+ C +G+++E+ F L +G S +
Sbjct: 101 NSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTL 160
Query: 163 VNKMIKQGSV-PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
+N + K G P L + IC+ DV I + K+ ++ +AF L C
Sbjct: 161 INGLCKIGQTGPALRLLRKIEGEICR-------PDVVMYNTIIDGLCKDKLVRDAFDLYC 213
Query: 222 NLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPN 255
+ E ++FP+ +GQ D AF +EM +K PN
Sbjct: 214 EMFE--KRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPN 258
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M + +PD ++ L++ C SG++ A +++ E+ D+G P V + +++ + K
Sbjct: 352 FEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCK 411
Query: 169 ----------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
QG ++ T+N L++ +CK G L G DV T
Sbjct: 412 SHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVT 471
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I + KE + DEA LL + + G
Sbjct: 472 YSIMINGLCKESLFDEALTLLSKMEDKG 499
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G + T+ ILV+ C G++ +AQ+ Q+L KG N V + M+N + K+
Sbjct: 428 QGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKE----- 482
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE--DGHKLFP 232
F+ + + K + G D + I A ++ M D+A +LL +++ D
Sbjct: 483 -SLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMIDCVDYKDNGD 541
Query: 233 SLGQFDDAFC 242
+ Q+D+ C
Sbjct: 542 TCDQYDEFIC 551
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 47/210 (22%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A N Q V L + V GF PD T+T L++A+C S +M A E L+++ D
Sbjct: 509 CKAGNIDQAVKLMKDMEVA-------GFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLD 561
Query: 150 KGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-- 191
+ P V ++++ M+++G +P+ T+NSLI+ C +
Sbjct: 562 RELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRA 621
Query: 192 ------GLCA-----DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL---------- 230
G+CA D NT I I K + EA+ L ++V G L
Sbjct: 622 TTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIK 681
Query: 231 -FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F +F +A F +M+ + +R +Y
Sbjct: 682 GFYKRKKFLEARELFEQMRREGLVADREIY 711
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 91/200 (45%), Gaps = 27/200 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKC------------TAFNCQQC----VLLYNSLHVCFVRMI 113
+I+ F K G + +A +F++ TA C C V+ + L F M+
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKL---FHEMV 420
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
K PD+ T+T L++ +C GKM+EA ++ G P + + + + + K G V
Sbjct: 421 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEV- 479
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-HKLFP 232
+T N L+ +C+ GL ++ T + + K ID+A +L+ ++ G H
Sbjct: 480 --DTANELLHEMCRK---GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAV 534
Query: 233 SLGQFDDAFCFFSEMQIKTH 252
+ DA+C EM ++ H
Sbjct: 535 TYTTLMDAYCKSREM-VRAH 553
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------- 154
H ++M +G +PD +++ ++N +C G+++ + ++E+ KG P
Sbjct: 273 HQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILL 332
Query: 155 -----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
V A++++ +MI +G PD + +LI+ CK G + + +++ +S
Sbjct: 333 LCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRL-FDEMQKRKISP 391
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+F+ A ++C L + G + +A F EM K P+ Y
Sbjct: 392 DFITYTA--VICGLCQTGRVM--------EADKLFHEMVCKRLEPDEVTYT 432
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M KG VPD T+ IL+ C + M+EA +++ KGFN V S
Sbjct: 629 MCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKK 688
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A+++ +M ++G V D E +N + G++ L
Sbjct: 689 FLEARELFEQMRREGLVADREIYNIFADINYDEGKMEL 726
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 55/263 (20%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++M D P +S +I F K G +D A +++ V+ Y+S+
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M++ G +P+ RT+ +V+ +CSSG+ +EA FL+++ G P V
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCAD 196
+ A++M + M K+G P++ T+ +L++ G L GL
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 197 VNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
+ N I I A +K+ +D+A + + + G + G+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+DA +F +M + P VY
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVY 447
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + K G +D A+ VF+K
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK---------------- 399
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------VRS 158
M ++G PD T+ ++ C SG++ +A + +++ D+ +P + S
Sbjct: 400 ------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
AK+++ +M+ +G D FNS+I++ CK G +G+ D
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
+ T I +DEA +LL ++V G K + + + +DA F
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 574 EMESSGVSPDIITY 587
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G PD T++ L++ +C +GKM EA + L + G P + ++N
Sbjct: 502 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + DEA R+ NL
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNL 645
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 23/172 (13%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + RM + G +P+ ++ IL+ C + +EA E LQ + D G + P V S
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 161 QMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++N K+G + T++ +++ G+ +V T I A+ K +D+A +
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDR-------GILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 220 LCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L ++V++G H + S GQ +A F +M P+ Y
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHG-YCSSGQPKEAIGFLKKMHSDGVEPDVVTY 307
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 42/215 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC------ 108
M+ L + P SL+I K G VF C+ V +Y +L
Sbjct: 321 MEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGN 380
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK----------- 150
F RM +GF PD T+ ++VN C SG++ EA E+ + D
Sbjct: 381 VNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSS 440
Query: 151 -----GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
G V A++ +M+++G D +N+LI+ + KSG++ G
Sbjct: 441 LIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEG 500
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T I I + KE +EA +L +++ G
Sbjct: 501 CDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKG 535
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
E MK + T +I+ K G +D AVE F C + Y+SL
Sbjct: 389 ERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKA 448
Query: 106 ------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS- 158
F M+ +G D + L++A SGKM EA + + +G + V +
Sbjct: 449 GRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTY 508
Query: 159 ---------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS 203
A ++ + MI +G P +F +L +C SG++ + ++++
Sbjct: 509 TILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKI-LDELA 567
Query: 204 IPAVSKEFMIDEAFRLLC 221
V E ++ +LC
Sbjct: 568 PMGVIPETAFEDMINVLC 585
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 30/166 (18%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
E K + ++V S +I+ GK G +D A + F + C Q YN+L
Sbjct: 424 EFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKS 483
Query: 106 ------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS- 158
V F RM ++G T+TIL++ + EA + + DKG P S
Sbjct: 484 GKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASF 543
Query: 159 ---------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A ++++++ G +P+ F +I +CK+G
Sbjct: 544 RALSVGLCLSGKVARACKILDELAPMGVIPE-TAFEDMINVLCKAG 588
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M ++ PDK T+ L+ A S G QE+ ++G P + ++ + K
Sbjct: 283 FTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCK 342
Query: 169 QG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G +V F ++ + CK A+V I A K ++EA L + +G
Sbjct: 343 DGRTVEGSSVFENMNKKGCK-------ANVAIYTALIDAYGKNGNVNEAINLFERMKGEG 395
>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 794
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 57/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T+ ++++ K G +++ ++ K C ++ YN+L +V F +
Sbjct: 174 TVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKEL 233
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR--------------- 157
KGF+P +T+ ++N +C GK + L E+S++G + +
Sbjct: 234 KMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCR 293
Query: 158 -SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL---------GLCADVNTNKIS---- 203
A V MIK G PD+ T+N LI C GE+ + + NK+S
Sbjct: 294 IEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPL 353
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
I K+ A LL + E GHK P L G+ D A ++M K
Sbjct: 354 IHNYCKQGEYLRALDLLIKMSERGHK--PDLVTYAALIHGLIVAGEVDVALTVRNKMVEK 411
Query: 251 THPPNRPVY 259
P+ +Y
Sbjct: 412 GVLPDANIY 420
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV------- 163
+ I++G +P+K ++T L++ +C G+ A + L ++S++G P + + ++
Sbjct: 337 QAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAG 396
Query: 164 ---------NKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKE 210
NKM+++G +PD +N L+ +CK G L L A++ ++ A
Sbjct: 397 EVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITA 456
Query: 211 FMID---------EAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIK 250
++D EA +L +E G K + G DA F M
Sbjct: 457 TLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQG 516
Query: 251 THPPNRPVYA 260
H P+ Y+
Sbjct: 517 LHSPDEFTYS 526
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 30/170 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSLHVCFV 110
+++MK L + SL+I F GL+D A+E + +C V NSL V
Sbjct: 89 LKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLV 148
Query: 111 R-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
+ M+ + D T I+V C GK+ + + +++ +G P +
Sbjct: 149 KHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIV 208
Query: 158 SAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSGEL 191
+++ K+G +P ++T+ ++I CK G+
Sbjct: 209 FYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKF 258
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 40/192 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M +G P ++T L++ +C GK EA+ E+ ++G P V +
Sbjct: 265 FEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCK 324
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
AK ++ MI++G VP+L T+NSLIE C G+L G DV
Sbjct: 325 EGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVIC 384
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH----KLFPSL-------GQFDDAFCFFSEMQ 248
+ I K ++EA +L +++ G K + +L G+ DA F M+
Sbjct: 385 YTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMK 444
Query: 249 IKTHPPNRPVYA 260
+ P + +Y
Sbjct: 445 VYGIPGDLYIYG 456
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
F P +++I+++A C + EA++ +E+ +G P V S AK
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAK 297
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD---VNTNKISIPAVSKEFMIDEAF 217
++ N+M+ QG P++ TFN LI+ +CK G++ D V + +P + + E F
Sbjct: 298 RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGF 357
Query: 218 RLLCNLVEDGHKLF---PSLGQFDDAFCF 243
L+ +L +LF PS G D C+
Sbjct: 358 CLVGDL-NSARELFVSMPSKGCEPDVICY 385
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
NS FV M KG PD +T+L+N +C + K+ EA + + G P V++ +
Sbjct: 364 NSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 423
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL--------GLCAD 196
+ + + G V D + +++ G+L GLC +
Sbjct: 424 LTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKN 465
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
Y+ + + +M G PD T IL+N C+ ++ E + + +G+ P + +
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A + +M K G P+ T+ +L++ +C++G + +
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISI 219
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 55/263 (20%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++M D P +S +I F K G +D A +++ V+ Y+S+
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M++ G +P+ RT+ +V+ +CSSG+ +EA FL+++ G P V
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCAD 196
+ A++M + M K+G P++ T+ +L++ G L GL
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 197 VNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
+ N I I A +K+ +D+A + + + G + G+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+DA +F +M + P VY
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVY 447
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + RM + G +P+ ++ IL+ C + +EA E LQ + D G + P V S
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++N K+G + + + + E + + G+ +V T I A+ K +D+A +L
Sbjct: 204 TVINGFFKEGDLD--KAYGTYHEML----DRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257
Query: 221 CNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++V++G H + S GQ +A F +M P+ Y
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHG-YCSSGQPKEAIGFLKKMHSDGVEPDVVTY 307
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 41/141 (29%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + K G +D A+ VF+K
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK---------------- 399
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
M ++G PD T+ ++ C SG++ +A + +++ D+ +P
Sbjct: 400 ------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP----------- 442
Query: 166 MIKQGSVPDLETFNSLIETIC 186
G++ +NSLI ++C
Sbjct: 443 ----GNI----VYNSLIHSLC 455
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 55/263 (20%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++M D P +S +I F K G +D A +++ V+ Y+S+
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M++ G +P+ RT+ +V+ +CSSG+ +EA FL+++ G P V
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCAD 196
+ A++M + M K+G P++ T+ +L++ G L GL
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 197 VNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
+ N I I A +K+ +D+A + + + G + G+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+DA +F +M + P VY
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVY 447
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + K G +D A+ VF+K
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK---------------- 399
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------VRS 158
M ++G PD T+ ++ C SG++ +A + +++ D+ +P + S
Sbjct: 400 ------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
AK+++ +M+ +G D FNS+I++ CK G +G+ D
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
+ T I +DEA +LL ++V G K + + + +DA F
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 574 EMESSGVSPDIITY 587
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G PD T++ L++ +C +GKM EA + L + G P + ++N
Sbjct: 502 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + DEA R+ NL
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNL 645
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 23/172 (13%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + RM + G +P+ ++ IL+ C + +EA E LQ + D G + P V S
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 161 QMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++N K+G + T++ +++ G+ +V T I A+ K +D+A +
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDR-------GILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 220 LCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L ++V++G H + S GQ +A F +M P+ Y
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHG-YCSSGQPKEAIGFLKKMHSDGVEPDVVTY 307
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 44/211 (20%)
Query: 62 VFPQ--TLSLIIEEFGKHGLIDNAVEVF-NKC-----------TAFNCQQCVLLYNSLHV 107
VFP T S++I K G +D+A ++F C T CV L +
Sbjct: 291 VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGM 350
Query: 108 -CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------ 154
+ +M+RKG PD T+ L+N C G +REA++ + E++ +G P
Sbjct: 351 EIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGC 410
Query: 155 ----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADV 197
+ SA ++ +M+K+G D F +LI C+ G E G+ D
Sbjct: 411 CKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD 470
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
T + I K+ + F+LL + DGH
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH 501
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 69 LIIEEFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
L+ E GK GL V + C + N Q L M+ PD T+
Sbjct: 246 LLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRF-------MMENRVFPDVFTY 298
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIK 168
++L+N C G++ +A + E+ D+G P + ++N +M++
Sbjct: 299 SVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR 358
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G PD+ T+N+LI +CK G+L GL D T + I KE ++
Sbjct: 359 KGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLES 418
Query: 216 AFRLLCNLVEDGHKL 230
A + +V++G +L
Sbjct: 419 ALEIRKEMVKEGIEL 433
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 34/164 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+KPD T +++I+ K G +++A+E+ + + + + +L F R
Sbjct: 396 LKPDKF-----TYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQ 450
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M+ G PD T+T++++ +C G ++ + L+E+ G P V +
Sbjct: 451 VIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNV 510
Query: 162 MVNKMIKQGS----------------VPDLETFNSLIETICKSG 189
++N + KQG VPD T+N L+E CK G
Sbjct: 511 LLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHG 554
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ----QCVLLYNSLH---------VCFVRMI 113
S+++ + G +A++ F N Q C L++ L + ++
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV- 172
G+ PD +L++ C K+ EAQ E+ +G P V S ++N K G++
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277
Query: 173 ---------------PDLETFNSLIETICKSGEL 191
PD+ T++ LI +CK G+L
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQL 311
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 43/197 (21%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------I 113
++++I K G++D A+ VF + + V+ Y++L F RM I
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------V 156
G P+ + L++ +C G + +A+EF+ E+ KG + P V
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRV 529
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A+ + N +I G P + TFNSLI+ C G++ G+ DV TN
Sbjct: 530 MDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTL 589
Query: 204 IPAVSKEFMIDEAFRLL 220
+ K ID+ L
Sbjct: 590 VSGYCKSGKIDDGLILF 606
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M KG +PD T + +++ C G+ ++A+E Q ++ KG P + S +++
Sbjct: 325 FRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYAT 384
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G D+ N+L ++ G + C +N I I A +K M+DEA + + G
Sbjct: 385 EGRFADM---NNLFHSMADKGIVSNCHCIN---ILISAHAKRGMMDEAMLVFTEMQGQGV 438
Query: 229 K-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ F +G+ DA FS+M PN VY
Sbjct: 439 RPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVY 480
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 95/251 (37%), Gaps = 64/251 (25%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
++ M + P +S +I F K G + A +FN+
Sbjct: 218 VQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNE-------------------- 257
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------- 156
M++KG VPD T+ +V+A C + M +A+ L+++ DKG P
Sbjct: 258 --MVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCS 315
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTN 200
+ + +M KM +G +PD TF+S + ++CK G G D+ +
Sbjct: 316 GHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSY 375
Query: 201 KISIPAVSKEF-----------MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
I + + E M D+ C+ + G D+A F+EMQ
Sbjct: 376 SILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQG 435
Query: 250 KTHPPNRPVYA 260
+ PN Y+
Sbjct: 436 QGVRPNVVTYS 446
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMI 113
S II G + +A +VFN + ++ +NSL C V M+
Sbjct: 516 FSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMV 575
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VR 157
G PD T+ LV+ +C SGK+ + +E+ K P
Sbjct: 576 SVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTS 635
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+AK+M ++MI G+ D++T+ L++ +C++
Sbjct: 636 AAKKMFHEMIDSGTAVDIDTYKILLKGLCRN 666
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK---------- 115
T ++++ ++ L D A+ +F+K A +C+ + + N++ ++ R+
Sbjct: 655 TYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAI 714
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G VP+ T+ +++ G + EA + G P R ++ ++++G +
Sbjct: 715 STSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI 774
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 34/139 (24%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
++ V RM VPD ++ ++ + C + +EA + MV
Sbjct: 178 AVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALD-------------------MV 218
Query: 164 NKMIKQGS--VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
+M K+G PD+ +FN++I K GE+ G+ DV T + A+
Sbjct: 219 QRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALC 278
Query: 209 KEFMIDEAFRLLCNLVEDG 227
K +D+A +L +V+ G
Sbjct: 279 KARAMDKAEFVLRQMVDKG 297
>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
Length = 789
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 51/210 (24%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH--- 106
+T+E +K + V ++I+ + K GL D A+E F F+C V YN +
Sbjct: 112 QTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVL 171
Query: 107 ----------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP- 155
+ RM++ +P+ T +IL++ C SG +++A E++ +G P
Sbjct: 172 IQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDA 231
Query: 156 ---------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
V A ++ +KM G PD T N+L+ C
Sbjct: 232 FTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDR---------- 281
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+DEAF LL +DG+ L
Sbjct: 282 ------------VDEAFSLLRLFEKDGYVL 299
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 53/202 (26%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M G VPD + +L+ +C G + EA+ E+S P V
Sbjct: 362 MTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGL 421
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------------------ 191
R A+++ N+M K G P TFNSLI+ +CK+G+L
Sbjct: 422 TRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQ 481
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFD 238
D + + + + +I +A+R+L L + G F LG F+
Sbjct: 482 GPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFN 541
Query: 239 DAFCFFSEMQIKTHPPNRPVYA 260
A+ F EMQ K P+ Y
Sbjct: 542 GAYKLFREMQFKGLSPDTVTYG 563
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 71/208 (34%), Gaps = 79/208 (37%)
Query: 63 FP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HV 107
FP +T S++I ++GL +A E+FN+ C + +NSL H+
Sbjct: 403 FPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHL 462
Query: 108 CFVRM-------------------------------------IRKGF-----------VP 119
F +M I K + P
Sbjct: 463 LFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAP 522
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN--------------- 164
T+ ILVN +C G A + +E+ KG +P + ++N
Sbjct: 523 GIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVF 582
Query: 165 -KMIKQGSVPDLETFNSLIETICKSGEL 191
+M K G PD + +++ +C+ EL
Sbjct: 583 DQMEKNGCTPDAAVYRTMMTWMCRRMEL 610
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 45/188 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I F + G + A+++ N C + YN L R M
Sbjct: 549 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 608
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG P+ + IL+N C +G ++ A EFL++ MI +G
Sbjct: 609 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRD-------------------MIHRGLT 649
Query: 173 PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD+ T+NSLI +CK+G G+C D T I KE M D+A L
Sbjct: 650 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 709
Query: 220 LCNLVEDG 227
L V+ G
Sbjct: 710 LSRGVDSG 717
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 99/240 (41%), Gaps = 54/240 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCT-AFNCQQCVLLYNSLHVCFVR-------------MIRK 115
+I + G +D A V ++ + C + YN+L + + M K
Sbjct: 377 LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIK 436
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSA 159
G P+ T+TIL++ +C G++ EA+ L E+S KG + V+ A
Sbjct: 437 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 496
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCAD-----VNTNKISIPAVSKE 210
M M +G PD+ TFNSLI +CK + LGL D V N I+ +
Sbjct: 497 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 556
Query: 211 FM----IDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPN 255
F+ + EA +L+ +++ G + L +L G + F +M K PN
Sbjct: 557 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 616
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 47/187 (25%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ +GF P+ T+ +L++ C GK+ EA+ L ++ NP V ++N + +G
Sbjct: 330 RMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVLFNTLINGYVSRG 385
Query: 171 SV-----------------PDLETFNSLIETICKSGEL-------------GLCADVNTN 200
+ PD+ T+N+LI +CK G L G +V T
Sbjct: 386 RLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITY 445
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLG------------QFDDAFCFFSEMQ 248
I I KE ++EA +L + G L ++G + DA F +M
Sbjct: 446 TILIDRFCKEGRLEEARNVLDEMSGKGLAL-NAVGYNCLISALCKDEKVQDALNMFGDMS 504
Query: 249 IKTHPPN 255
K P+
Sbjct: 505 SKGCKPD 511
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I+ F K G ++ A V ++ + + YN L +C F M
Sbjct: 444 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 503
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
KG PD T L+ C K EA Q++ +G +N + +
Sbjct: 504 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAM 563
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG--ELGLC-------ADVNTNKIS---- 203
A ++VN M+ +G D T+N LI+ +C++G E GL +N N IS
Sbjct: 564 QEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNIL 623
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTH 252
I + + I A L +++ G + L L G+ +A F ++Q++
Sbjct: 624 INGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 683
Query: 253 PPNRPVY 259
P+ Y
Sbjct: 684 CPDAITY 690
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 30/163 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF-NKCTAFNCQQCVLLYNS-LHV----- 107
MK + + LI++ +G+ GL A + + ++C+ YN L V
Sbjct: 155 MKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGN 214
Query: 108 -------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
F M+ KG P T +++ A C ++ A L++++ G P +
Sbjct: 215 CPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQ 274
Query: 161 QMVNKMIKQGSV----------------PDLETFNSLIETICK 187
+++ + K G V PD+ TFN I +CK
Sbjct: 275 TLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK 317
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 44/191 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ K VP + T+ ILVN+ C +G + A+E + ++ GF P
Sbjct: 286 MLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGR 345
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------GLCA-DVNTNKI 202
++ A + ++M++ G PD+ T +I+ +CKSG G C +V T
Sbjct: 346 MKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQI 249
I +SK + AFR++ ++ H FP LG+ D+A E+
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMI--AHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463
Query: 250 KTHPPNRPVYA 260
+ PN +Y+
Sbjct: 464 CSSSPNLQLYS 474
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRM 112
T +++ K G ++ A E+F A + ++Y SL C F M
Sbjct: 297 TYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEM 356
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ G+ PD THT++++ C SG +A + +E+ G P V
Sbjct: 357 VEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+A +++ MI G PD T+ L++ CK G L
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL 451
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 34/227 (14%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
PD+++ P + L K G +D AV++ + ++ V+ Y +L +C
Sbjct: 576 PDAVTYTPLCIGLC-----KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
F M+R+G PD + ++N K+ +A +F E+ KG P V + +V
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALV 690
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
+ G+V E F+ E++ GE L V I K +D A +L ++
Sbjct: 691 QALCHAGNVD--EAFHRF-ESMLARGE--LVGSVMIYDALIHGFCKALKVDAALKLFEDM 745
Query: 224 VEDGH--------KLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G+ LF L G+ + A EM PP+ +
Sbjct: 746 ISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATF 792
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 29/190 (15%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
+PD + T +++I+ K G + A + F + C+ V+ Y ++ +
Sbjct: 362 RPDVI-----THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
MI G PD T+ L++ +C G++ EA + L EL +P ++ +
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSL 476
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL---GLCADVNTNKISIPAVSKEFMIDEAFRL 219
VN + GSV +T + L E + E GLC + I + K +DEA R+
Sbjct: 477 VNGLCDGGSVE--KTLDDLFEQSKAAAETLDPGLCCSI------IVGLCKTGRLDEACRI 528
Query: 220 LCNLVEDGHK 229
+V +G K
Sbjct: 529 FQRMVSEGCK 538
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 28/169 (16%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------ 155
CF M RK PD T ILV+ C +G +A E E+ GF PP
Sbjct: 176 CFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTL 235
Query: 156 -----VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
V+ A+++ +M K G PD +N++I+ + K+G V N ++ V E
Sbjct: 236 LKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTE 295
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LC G + A F M PN +Y
Sbjct: 296 VTYGILVNSLCK-----------AGTLERAEELFRVMAASGFRPNSVIY 333
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 43/196 (21%)
Query: 39 NLTLISEL--------SMWKTI----ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEV 86
NL L S L S+ KT+ E K + ++ P II K G +D A +
Sbjct: 469 NLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRI 528
Query: 87 FNKCTAFNCQQCVLLYNSL--HVCFVR-------------MIRKGFVPDKRTHTILVNAW 131
F + + C+ YN L +C R + + G++PD T+T L
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGL 588
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDL 175
C G++ A + L+E S +G+N V + A + +M++QG PD
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDA 648
Query: 176 ETFNSLIETICKSGEL 191
+ +I + K +L
Sbjct: 649 AAYCCIINGLIKVKKL 664
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 44/211 (20%)
Query: 62 VFPQ--TLSLIIEEFGKHGLIDNAVEVF-NKC-----------TAFNCQQCVLLYNSLHV 107
VFP T S++I K G +D+A ++F C T CV L +
Sbjct: 291 VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGM 350
Query: 108 -CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------ 154
+ +M+RKG PD T+ L+N C G +REA++ + E++ +G P
Sbjct: 351 EIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGC 410
Query: 155 ----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADV 197
+ SA ++ +M+K+G D F +LI C+ G E G+ D
Sbjct: 411 CKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD 470
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
T + I K+ + F+LL + DGH
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKEMQCDGH 501
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 42/196 (21%)
Query: 69 LIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
L+ E GK GL V FN C + N Q L M+ PD T
Sbjct: 246 LLFGEIGKRGLRPTVVS-FNTLINGYCKSGNLDQGFRLKRF-------MMENRVFPDVFT 297
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMI 167
+++L+N C G++ +A + E+ D+G P + ++N +M+
Sbjct: 298 YSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQML 357
Query: 168 KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
++G PD+ T+N+LI +CK G+L GL D T + I KE ++
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417
Query: 215 EAFRLLCNLVEDGHKL 230
A + +V++G +L
Sbjct: 418 SALEIRKEMVKEGIEL 433
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ----QCVLLYNSLH---------VCFVRMI 113
S+++ + G +A++ F N Q C L++ L + ++
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV- 172
G+ PD +L++ C K+ EAQ E+ +G P V S ++N K G++
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277
Query: 173 ---------------PDLETFNSLIETICKSGEL 191
PD+ T++ LI +CK G+L
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQL 311
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+KPD T +++I+ K G +++A+E+ + + + + +L F R
Sbjct: 396 LKPDKF-----TYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQ 450
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M+ G PD T+T++++ +C G ++ + L+E+ G P V +
Sbjct: 451 VIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNV 510
Query: 162 MVNKMIKQGS----------------VPDLETFNSLIETICKSGELG 192
++N + KQG VPD T+N L+E ++ + G
Sbjct: 511 LLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQAWKQG 557
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 55/263 (20%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++M D P +S +I F K G +D A +++ V+ Y+S+
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M++ G +P+ RT+ +V+ +CSSG+ +EA FL+++ G P V
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCAD 196
+ A++M + M K+G P++ T+ +L++ G L GL
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 197 VNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
+ N I I A +K+ +D+A + + + G + G+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+DA +F +M + P VY
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVY 447
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + K G +D A+ VF+K
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK---------------- 399
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------VRS 158
M ++G PD T+ ++ C SG++ +A + +++ D+ +P + S
Sbjct: 400 ------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
AK+++ +M+ +G D FNS+I++ CK G +G+ D
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
+ T I +DEA +LL ++V G K + + + +DA F
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 574 EMESSGVSPDIITY 587
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G PD T++ L++ +C +GKM EA + L + G P + ++N
Sbjct: 502 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + DEA R+ NL
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNL 645
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 23/172 (13%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + RM + G +P+ ++ IL+ C + +EA E LQ + D G + P V S
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 161 QMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++N K+G + T++ +++ G+ +V T I A+ K +D+A +
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDR-------GILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 220 LCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L ++V++G H + S GQ +A F +M P+ Y
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHG-YCSSGQPKEAIGFLKKMHSDGVEPDVVTY 307
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 55/263 (20%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+++M D P +S +I F K G +D A +++ V+ Y+S+
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M++ G +P+ RT+ +V+ +CSSG+ +EA FL+++ G P V
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCAD 196
+ A++M + M K+G P++ T+ +L++ G L GL
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364
Query: 197 VNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
+ N I I A +K+ +D+A + + + G + G+
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+DA +F +M + P VY
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVY 447
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + K G +D A+ VF+K
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK---------------- 399
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------VRS 158
M ++G PD T+ ++ C SG++ +A + +++ D+ +P + S
Sbjct: 400 ------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
AK+++ +M+ +G D FNS+I++ CK G +G+ D
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
+ T I +DEA +LL ++V G K + + + +DA F
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 574 EMESSGVSPDIITY 587
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G PD T++ L++ +C +GKM EA + L + G P + ++N
Sbjct: 502 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCK 561
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + DEA R+ NL
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNL 645
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 23/172 (13%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + RM + G +P+ ++ IL+ C + +EA E LQ + D G + P V S
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 161 QMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++N K+G + T++ +++ G+ +V T I A+ K +D+A +
Sbjct: 204 TVINGFFKEGDLDKAYGTYHEMLDR-------GILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 220 LCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L ++V++G H + S GQ +A F +M P+ Y
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHG-YCSSGQPKEAIGFLKKMHSDGVEPDVVTY 307
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL++ A+EV + + C L YN L F + M
Sbjct: 174 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 233
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G PD ++ L+ A C SG++ A E L +L DKG P
Sbjct: 234 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 293
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A +++N+M+ +G PD+ T++++ +C+
Sbjct: 294 KEALELLNEMVSKGLQPDIITYSTIAAGLCR 324
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 120/295 (40%), Gaps = 64/295 (21%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+ ++V + I E T R K ++ M+ + T ++++ + G +
Sbjct: 64 VPDVVTYTILLEATCKRSGYK-----QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKGFVPDKRTHTIL 127
D+A+E ++ C+ + YN + +C M +KG P+ T +L
Sbjct: 119 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 178
Query: 128 VNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQGS 171
++ C G + A E L+++ G +NP + + A ++ M+ +G
Sbjct: 179 ISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 238
Query: 172 VPDLETFNSLIETICKSGELGL------------CADV--NTNKISIPAVSKEFMIDEAF 217
PD+ ++N+L+ +C+SGE+ + CA V + N + I ++K EA
Sbjct: 239 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV-IDGLTKAGKTKEAL 297
Query: 218 RLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
LL +V G L P + + +DA F ++Q PN +Y
Sbjct: 298 ELLNEMVSKG--LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 350
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N+L V M+R+ VPD T+TIL+ A C ++A + L E+ DKG P + + +
Sbjct: 50 NALAV-LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVV 108
Query: 163 VNKMIKQGSVPDLETF 178
VN + ++G V D F
Sbjct: 109 VNGICQEGRVDDAIEF 124
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 48/228 (21%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
P+SLS P ++ F K +D A+ + + C ++ YN+L R
Sbjct: 205 PNSLSYNP-----LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 259
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
+ KG P ++ +++ +GK +EA E L E+ KG P
Sbjct: 260 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 319
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
+ A + K+ G P+ +N++I +CK E G
Sbjct: 320 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 379
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLV-EDGHKLFPSLGQFDDAF 241
+ +T I I ++ E +I EA LL L G ++ + D AF
Sbjct: 380 PNESTYTILIEGLAYEGLIKEARDLLDELCSRAGEEILLDVHLIDVAF 427
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 37/170 (21%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDK----GFNPPVRS---------AKQMVNKMIKQ 169
+ +V +C +G++ A+ + E+ + +N +R A ++++M+++
Sbjct: 2 AYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRR 61
Query: 170 GSVPDLETFNSLIETICK-SG------------ELGLCADVNTNKISIPAVSKEFMIDEA 216
VPD+ T+ L+E CK SG + G D+ T + + + +E +D+A
Sbjct: 62 RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDA 121
Query: 217 FRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
L NL G K + +++DA EM K PPN
Sbjct: 122 IEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 171
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIR 114
S +++ + G + A+E F + V YNSL R M+
Sbjct: 185 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 244
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+GF PD T TIL++ C GK+ EAQ+ L+ + KG P + + ++N + G
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQ--- 301
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
LE L E++ + G+ +V + I I K+ IDEAFRL + G K
Sbjct: 302 LEDATKLFESLA---DRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLK 353
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 64/235 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +II+ K G+ A+++F++ MI G +PD ++
Sbjct: 148 TYGMIIDSLCKDGMTTEALDMFSE----------------------MIGAGILPDVVVYS 185
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----------------NKMIKQ 169
L++ C G+++EA EF +E+ +G + V + ++ N M+ +
Sbjct: 186 SLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDR 245
Query: 170 GSVPDLETFNSLIETICKSGELGLCA---DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
G PD TF LI+ +CK G++G ++ +K P + + L+ L ED
Sbjct: 246 GFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQL-ED 304
Query: 227 GHKLFPSLG----------------------QFDDAFCFFSEMQIKTHPPNRPVY 259
KLF SL + D+AF F EM+ K P+ Y
Sbjct: 305 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTY 359
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 41/248 (16%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTI----ELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+ D+Y +L + +S +WK + LM S T +++I+ K G +
Sbjct: 212 ISADVYTYNSL----IHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 267
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIR-----------KGFVPDKRTHTIL 127
A ++ + +L YN+L +C V + +G + ++ IL
Sbjct: 268 GEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 327
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGS 171
+N +C K+ EA +E+ KG P VR+A+++ +M G
Sbjct: 328 INGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 387
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
L T+ L++ +CK+G L D+ SI + I E F +L + + KL
Sbjct: 388 FLKLSTYCVLLDGLCKNGHLEEAIDLFQ---SIKKTEHKPNI-EVFSILLDGMCRAGKLE 443
Query: 232 PSLGQFDD 239
+ QFD+
Sbjct: 444 EAWKQFDE 451
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 48/162 (29%)
Query: 113 IRKGFVPDKRTHTILVNA-WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
+++GF PD T T LV W +G + A Q+ ++M ++G
Sbjct: 69 LKRGFEPDAVTVTTLVKGVWMENG--------------------IPDAVQLFDEMTEKGL 108
Query: 172 VPDLETFNSLIETICKSGELGLC------------ADVNTNKISIPAVSKEFMIDEAFRL 219
D +T+ LI +CK+ + GL DV T + I ++ K+ M EA +
Sbjct: 109 FGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDM 168
Query: 220 LCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQ 248
++ G + P + G+ +A FF EM+
Sbjct: 169 FSEMI--GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEME 208
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF---NKCTAFN--CQQCVLLYN 103
++ E M+P L T + +I + G + A ++F C F CVLL
Sbjct: 341 FRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDG 400
Query: 104 ---SLHV-----CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+ H+ F + + P+ +IL++ C +GK+ EA + E+S G P
Sbjct: 401 LCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPD 460
Query: 156 VRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGEL 191
+ ++N +M ++G +PD TFN +I+ + K E+
Sbjct: 461 TIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 512
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL++ A+EV + + C L YN L F + M
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 361
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G PD ++ L+ A C SG++ A E L +L DKG P
Sbjct: 362 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 421
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A +++N+M+ +G PD+ T++++ +C+
Sbjct: 422 KEALELLNEMVSKGLQPDIITYSTIAAGLCR 452
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 120/295 (40%), Gaps = 64/295 (21%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+ ++V + I E T R K ++ M+ + T ++++ + G +
Sbjct: 192 VPDVVTYTILLEATCKRSGYK-----QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 246
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKGFVPDKRTHTIL 127
D+A+E ++ C+ + YN + +C M +KG P+ T +L
Sbjct: 247 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 306
Query: 128 VNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQGS 171
++ C G + A E L+++ G +NP + + A ++ M+ +G
Sbjct: 307 ISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 366
Query: 172 VPDLETFNSLIETICKSGELGL------------CADV--NTNKISIPAVSKEFMIDEAF 217
PD+ ++N+L+ +C+SGE+ + CA V + N + I ++K EA
Sbjct: 367 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV-IDGLTKAGKTKEAL 425
Query: 218 RLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
LL +V G L P + + +DA F ++Q PN +Y
Sbjct: 426 ELLNEMVSKG--LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 478
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R+ VPD T+TIL+ A C ++A + L E+ DKG P + + +VN + ++G
Sbjct: 186 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 245
Query: 172 VPDLETF 178
V D F
Sbjct: 246 VDDAIEF 252
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 47/227 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
P+SLS P ++ F K +D A+ + + C ++ YN+L R
Sbjct: 333 PNSLSYNP-----LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 387
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
+ KG P ++ +++ +GK +EA E L E+ KG P
Sbjct: 388 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 447
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
+ A + K+ G P+ +N++I +CK E G
Sbjct: 448 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 507
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAF 241
+ +T I I ++ E +I EA LL L G ++ + D AF
Sbjct: 508 PNESTYTILIEGLAYEGLIKEARDLLDELCSRGEEILLDVHLIDVAF 554
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 41/221 (18%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----HVCFVRMIRKGFVPDKRTHTILVNAW 131
+ G +D A+ + + C L L R + PD + ++ +
Sbjct: 79 RRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMMAGY 138
Query: 132 CSSGKMREAQEFLQELSD-----------KGFNPPVRSAKQM--VNKMIKQGSVPDLETF 178
C +G++ A+ + E + +G R+A + +++M+++ VPD+ T+
Sbjct: 139 CGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTY 198
Query: 179 NSLIETICK-SG------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
L+E CK SG + G D+ T + + + +E +D+A L NL
Sbjct: 199 TILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS 258
Query: 226 DG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
G K + +++DA EM K PPN
Sbjct: 259 YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 299
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 44/191 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ K VP + T+ ILVN+ C +G + A+E + ++ GF P
Sbjct: 286 MLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGR 345
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------GLCA-DVNTNKI 202
++ A + ++M++ G PD+ T +I+ +CKSG G C +V T
Sbjct: 346 MKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQI 249
I +SK + AFR++ ++ H FP LG+ D+A E+
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMI--AHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463
Query: 250 KTHPPNRPVYA 260
+ PN +Y+
Sbjct: 464 CSSSPNLQLYS 474
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRM 112
T +++ K G ++ A E+F A + ++Y SL C F M
Sbjct: 297 TYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEM 356
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ G+ PD THT++++ C SG +A + +E+ G P V
Sbjct: 357 VEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+A +++ MI G PD T+ L++ CK G L
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL 451
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 34/227 (14%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
PD+++ P + L K G +D AV++ + ++ V+ Y +L +C
Sbjct: 576 PDAVTYTPLCIGLC-----KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
F M+R+G PD + ++N K+ +A +F E+ KG P V + +V
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALV 690
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
+ G+V E F+ E + GE L V I K +D A +L ++
Sbjct: 691 QALCHAGNVD--EAFHRF-EGMLARGE--LVGSVMIYDALIHGFCKALKVDAALKLFEDM 745
Query: 224 VEDGH--------KLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G+ LF L G+ + A EM PP+ +
Sbjct: 746 ISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATF 792
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 28/169 (16%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------ 155
CF M RK PD T ILV+ C +G +A E E+ GF PP
Sbjct: 176 CFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTL 235
Query: 156 -----VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
V+ A+++ +M K G PD +N++I+ + K+G V N ++ V E
Sbjct: 236 LKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTE 295
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LC G + A F M PN +Y
Sbjct: 296 VTYGILVNSLCK-----------AGTLERAEELFRVMAASGFRPNSVIY 333
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 31/159 (19%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK------ 115
P II K G +D A +F + + C+ YN L +C R R
Sbjct: 506 PGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFAL 565
Query: 116 -------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
G++PD T+T L C G++ A + L+E S +G+N V +
Sbjct: 566 LHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCY 625
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A + +M++QG PD + +I + K +L
Sbjct: 626 QGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKL 664
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
+ S++I + +D A E+ N+ Q V+ Y SL +C F RM
Sbjct: 89 SYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRM 148
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ +G PD + +L++ + G M EA +E+ +KG P V +
Sbjct: 149 VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKIS 203
+ + M++QG VP++ TFN+L++ CK G+ LG DV +
Sbjct: 209 GRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTL 268
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I + + EA RLL ++ G
Sbjct: 269 IRGMCSKGKPHEAQRLLREMIRSG 292
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + ++ F + G +F C + +N+L H F+ M
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEM 253
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD ++ L+ CS GK EAQ L+E+ G P + S +++ K G++
Sbjct: 254 RSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGAL 313
Query: 173 ----------------PDLETFNSLIETICKSGELG 192
PD +++++I+ +C++G++G
Sbjct: 314 DHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVG 349
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +++ F K G + A +F + + C V+ YN+L +C M
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREM 288
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
IR G PD ++ IL++ + SG + A + E+ G P S +++
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKV 348
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL 191
MI GS PD L+ +C+ L
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERL 383
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 24/120 (20%)
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKE 210
N M+ G VP+ T+ L+ ++C++ G +V + I I + +
Sbjct: 41 NDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRG 100
Query: 211 FMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+DEA LL +++ GH+ + SL G+ +A FS M + PP+ VY
Sbjct: 101 QKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVY 160
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------FVRMIRK- 115
T + +I+ K G +D+A E+ ++ Q + YNS+ +C V+++ +
Sbjct: 901 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 960
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
G D T+T L++A+C SG+M +AQE L+E+ KG P +
Sbjct: 961 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 1020
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++++N M+ +G P+ TFNSL++ C
Sbjct: 1021 EDGEKLLNWMLAKGIAPNATTFNSLVKQYC 1050
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+IE + GL N+ ++ C+ C L F MIR+G +PD +T L++
Sbjct: 746 LIEVMKRKGLKPNSY-IYGSIIGLLCRICKL--AEAEEAFSEMIRQGILPDTVVYTTLID 802
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
+C G +R A +F E+ + P V + A ++ ++M +G P
Sbjct: 803 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP 862
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
D TF LI CK+G + G +V T I + KE +D A LL
Sbjct: 863 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 922
Query: 221 CNLVEDG 227
+ + G
Sbjct: 923 HEMWKIG 929
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++ EF + G+ N V +N F CQ + H + M KG+ PD +++
Sbjct: 672 TAIIVFREFPEVGVCWN-VASYNIVIHFVCQLGRI--KEAHHLLLLMELKGYTPDVISYS 728
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
+VN +C G++ + + ++ + KG P + A++ ++MI+Q
Sbjct: 729 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 788
Query: 170 GSVPDLETFNSLIETICKSGELGLCA----DVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
G +PD + +LI+ CK G++ + ++++ I+ P V I F + ++VE
Sbjct: 789 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDIT-PDVLTYTAIISGFCQIGDMVE 847
Query: 226 DG---HKLF 231
G H++F
Sbjct: 848 AGKLFHEMF 856
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 20/139 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI+ G P+ T+T L++ C G + A E L E+ G P + + +VN + K G+
Sbjct: 890 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 949
Query: 172 V----------------PDLETFNSLIETICKSGELGLCADVNTNKISI---PAVSKEFM 212
+ D T+ +L++ CKSGE+ ++ + P + +
Sbjct: 950 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 1009
Query: 213 IDEAFRLLCNLVEDGHKLF 231
+ F L ++EDG KL
Sbjct: 1010 LMNGF-CLHGMLEDGEKLL 1027
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 39/184 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFN---------KCTAFNC---QQCVLLYNSLHVC---FV 110
T ++++ F HG++++ ++ N T FN Q C+ N+L +
Sbjct: 1006 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI--RNNLKAATAIYK 1063
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
M +G PD +T+ LV C + M+EA QE+ KGF+ V +
Sbjct: 1064 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 1123
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A+++ ++M ++G D E F+ +T K D I + + +++D
Sbjct: 1124 KFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVD------PIDEIIENYLVD 1177
Query: 215 EAFR 218
E R
Sbjct: 1178 EQLR 1181
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 54/217 (24%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTI 126
+D A +F++ V+ YNS+ V VRM++ G +P++ TH
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------RS--AKQMVNKMIKQG 170
L++ +CSSGK +A + + G P V RS A+++ + M+K+G
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
P+ T+ +L+ G L V ++D R N ++ H +
Sbjct: 339 HKPNSATYGTLLHGYATEGSL---------------VKMHHLLDMMVR---NGIQPDHYI 380
Query: 231 FPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
F L G+ DDA FS+M+ + P+ Y
Sbjct: 381 FNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYG 417
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 62/257 (24%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
S + M +++M + + +++I + KHG +D+A+ +F+K + Y
Sbjct: 358 SLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYG 417
Query: 104 SL--HVCFV-----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+ +C V R+I +G PD L++ C+ K +A+E E+ +
Sbjct: 418 IVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGR 477
Query: 151 GFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
G P V AK + + M++ D+ T+N+LI+ C G+
Sbjct: 478 GICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGK---- 533
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCF 243
+DEA +LL +V DG K + G+ +DAF
Sbjct: 534 ------------------VDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSL 575
Query: 244 FSEMQIKTHPPNRPVYA 260
F +M K P Y+
Sbjct: 576 FRQMASKGVNPGIVTYS 592
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 50/224 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RMIRKG 116
++ K G++ A +F+ + Q+ V+ YN+L + M+ G
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
P++ T+ ++N +C +G++ +A ++++ KG NP + +AK
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAK 608
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID-----E 215
++ MIK G D+ T+N ++ LGLC + N ++ ++ID
Sbjct: 609 ELYLWMIKSGIKFDIGTYNIIL--------LGLCQN-NCTDDALRIFQNLYLIDFHLENR 659
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F ++ + + G G+ D+A F+ + + PN Y
Sbjct: 660 TFNIMIDALLKG-------GRHDEAKDLFASLLARGLVPNVVTY 696
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 59/251 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG--------- 116
T S++++ F K +D A+E+ + + C V+ +NS+ + R G
Sbjct: 295 TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQV 354
Query: 117 ----FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
VPDK T IL+ C +G +A +E+ K P V + +++ + K G V
Sbjct: 355 YNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQV 414
Query: 173 ----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
P++ T+N L+ +CKSG + G + T
Sbjct: 415 EAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSL 474
Query: 204 IPAVSKEFMIDEAFRLLC--------------NLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
+ A+ + D+A +L+ N++ DG L+ S G+ + A EM
Sbjct: 475 VYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDG--LWKS-GKTEQAITVLEEMVG 531
Query: 250 KTHPPNRPVYA 260
K H P+ +A
Sbjct: 532 KGHQPDSFTFA 542
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 55 MKPDSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
++ SL V P T+ S +I+ K G D A + A V+ YN+L
Sbjct: 214 LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKA 271
Query: 106 ------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
H M+ KG PD T+++LV+A+C + ++ EA E L ++ +G P V +
Sbjct: 272 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 331
Query: 160 KQMVNKMIKQGS----------------VPDLETFNSLIETICKSG 189
+++ + K VPD TFN LI CK+G
Sbjct: 332 NSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAG 377
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 49/241 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M D ++ T + II K + +E+F + V+ YN+L +
Sbjct: 72 MARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGD 131
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSA 159
M +G VP+ T+++L+N C G++ EA+E +QE++ K + P + +
Sbjct: 132 LEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 191
Query: 160 KQMVNKMIKQ---------------GSV---PDLETFNSLIETICKSGEL---------- 191
++ + KQ GS+ PD TF++LI+ +CK G+
Sbjct: 192 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIA 251
Query: 192 -GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEM 247
G +V T + + K ++ A ++ ++V+ G + P + + DAFC S +
Sbjct: 252 GGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKG--VTPDVITYSVLVDAFCKASRV 309
Query: 248 Q 248
Sbjct: 310 D 310
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 91/249 (36%), Gaps = 63/249 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC--VLLYNSL-----------HVC-FVR 111
T S++I K G ID A E+ + T +C ++ YNS C +R
Sbjct: 153 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 212
Query: 112 MIRKGFV---PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
+R G + PD T + L++ C G+ EA ++ G+ P V
Sbjct: 213 SLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCK 270
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
A M+ M+ +G PD+ T++ L++ CK+ + G +V T
Sbjct: 271 ADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVT 330
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSE 246
I + K EAF++ + L P G F+ A F E
Sbjct: 331 FNSIIDGLCKSDRSGEAFQIALQVYN--RMLVPDKVTFNILIAGACKAGNFEQASALFEE 388
Query: 247 MQIKTHPPN 255
M K P+
Sbjct: 389 MVAKNMQPD 397
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 31/156 (19%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK- 115
+L V P T ++++ K G I+ E + + C + Y SL R R
Sbjct: 426 NLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTD 485
Query: 116 ------------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
G+ PD T+ ILV+ SGK +A L+E+ KG P
Sbjct: 486 DALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACF 545
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIE 183
+ +++ ++ +G +PD T +S+++
Sbjct: 546 GGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------FVRMIRK- 115
T + +I+ K G +D+A E+ ++ Q + YNS+ +C V+++ +
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
G D T+T L++A+C SG+M +AQE L+E+ KG P +
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++++N M+ +G P+ TFNSL++ C
Sbjct: 578 EDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+IE + GL N+ ++ C+ C L F MIR+G +PD +T L++
Sbjct: 303 LIEVMKRKGLKPNSY-IYGSIIGLLCRICKL--AEAEEAFSEMIRQGILPDTVVYTTLID 359
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
+C G +R A +F E+ + P V + A ++ ++M +G P
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP 419
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
D TF LI CK+G + G +V T I + KE +D A LL
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 479
Query: 221 CNLVEDG 227
+ + G
Sbjct: 480 HEMWKIG 486
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++ EF + G+ N V +N F CQ + H + M KG+ PD +++
Sbjct: 229 TAIIVFREFPEVGVCWN-VASYNIVIHFVCQLGRI--KEAHHLLLLMELKGYTPDVISYS 285
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
+VN +C G++ + + ++ + KG P + A++ ++MI+Q
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 170 GSVPDLETFNSLIETICKSGELGLCA----DVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
G +PD + +LI+ CK G++ + ++++ I+ P V I F + ++VE
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDIT-PDVLTYTAIISGFCQIGDMVE 404
Query: 226 DG---HKLF 231
G H++F
Sbjct: 405 AGKLFHEMF 413
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 20/139 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI+ G P+ T+T L++ C G + A E L E+ G P + + +VN + K G+
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 172 V----------------PDLETFNSLIETICKSGELGLCADVNTNKISI---PAVSKEFM 212
+ D T+ +L++ CKSGE+ ++ + P + +
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 566
Query: 213 IDEAFRLLCNLVEDGHKLF 231
+ F L ++EDG KL
Sbjct: 567 LMNGF-CLHGMLEDGEKLL 584
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 39/184 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFN---------KCTAFNC---QQCVLLYNSLHVC---FV 110
T ++++ F HG++++ ++ N T FN Q C+ N+L +
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI--RNNLKAATAIYK 620
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
M +G PD +T+ LV C + M+EA QE+ KGF+ V +
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A+++ ++M ++G D E F+ +T K D I + + +++D
Sbjct: 681 KFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVD------PIDEIIENYLVD 734
Query: 215 EAFR 218
E R
Sbjct: 735 EQLR 738
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 44/213 (20%)
Query: 58 DSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH--------- 106
DS+ P T + +I G + +A+ VF+ C V+ Y+ L
Sbjct: 152 DSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGY 211
Query: 107 ----VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------PV 156
V M KG PD T+ +L+NA CS G + EA + L L G P PV
Sbjct: 212 KQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPV 271
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGL 193
A +++ KM PD TFN++I ++C+ G E G
Sbjct: 272 LKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGC 331
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
D+ T + + KE +DEA +LL L+ +
Sbjct: 332 TPDIITYSSIMDGLCKERRVDEAIKLLKELLAE 364
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 98/252 (38%), Gaps = 58/252 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I G + A++V N ++ C+ + Y + +C +M
Sbjct: 232 TYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKM 291
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------------ 154
PD+ T ++ + C G + A + L ++S+ G P
Sbjct: 292 FSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRV 351
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNT 199
++ K+++ +M+ + +PD TFN++I ++C+ G E G D+ T
Sbjct: 352 DEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITT 411
Query: 200 -NKISIPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSLG-------QFDDAFCFFSEM 247
N I + K +EA LL +V +G + SL + + A F +
Sbjct: 412 YNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRV 471
Query: 248 QIKTHPPNRPVY 259
Q P++ +Y
Sbjct: 472 QAMGLSPDKMLY 483
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 52/188 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + II + GL D A++V ++ M G +PD T+
Sbjct: 376 TFNTIITSLCQKGLFDRAIKVVDE----------------------MSEHGCIPDITTYN 413
Query: 126 ILVNAW-CSSGKMREAQEFLQELSDKGFNPPVRSAKQ----------------MVNKMIK 168
+V+ + C S K EA + L + G P + K M ++
Sbjct: 414 CIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQA 473
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G PD +N+++ +CK G D +T I + ++ E ++E
Sbjct: 474 MGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEE 533
Query: 216 AFRLLCNL 223
A LL NL
Sbjct: 534 AKELLGNL 541
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 99/265 (37%), Gaps = 99/265 (37%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + ++ F K G +D A+++F+ +++GFVPD T+
Sbjct: 122 TYNTLLHGFCKVGKLDEALKIFDGA----------------------VKRGFVPDVVTYN 159
Query: 126 ILVNAWCSSGKMREAQEFLQEL--------------------------------SDKGFN 153
L+N +C + K+ EAQ LQ + DKGF+
Sbjct: 160 ALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFS 219
Query: 154 PPV-----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----- 191
P V SA+Q++ KM+ G PD+ ++N+LI + + +
Sbjct: 220 PNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALK 279
Query: 192 --------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS---------- 233
G +V T I I + KE ++EAF L LV+ H L P
Sbjct: 280 LFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVK--HGLEPDAITYTVFIDG 337
Query: 234 ---LGQFDDAFCFFSEMQIKTHPPN 255
G+ +DA +M K P+
Sbjct: 338 LCKAGRVEDALLMLKDMDEKGCVPD 362
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 41/222 (18%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSG 135
KHG N + +N + C + + + RMI+ G+ PD T+ L++ +C G
Sbjct: 78 KHGFWPNRI-TYNALLSGLCNGGRM--SDAQALYERMIKAGYSPDVVTYNTLLHGFCKVG 134
Query: 136 KMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFN 179
K+ EA + +GF P V + A++++ +M+ + VPD+ T+N
Sbjct: 135 KLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYN 194
Query: 180 SLIETICKSGEL----------GLCADVNTNKISIPAVSKEF-MIDEAFRLLCNLVEDGH 228
SL+ +CK+G + G +V T I + +E ++ A +LL +V +G
Sbjct: 195 SLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGC 254
Query: 229 K--------LFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVY 259
K L L + +A F + + + P P Y
Sbjct: 255 KPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTY 296
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 43/194 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +++ G PD T+T+ ++ C +G++ +A L+++ +KG P V S ++N + K
Sbjct: 316 FSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCK 375
Query: 169 Q----------------GSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ G P+ +FN+LI C++G+ G+ V T
Sbjct: 376 EKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVT 435
Query: 200 NKISIPAVSK---EFMIDEAFRLLCNLVEDGH--------KLFPSL---GQFDDAFCFFS 245
I + + K E I EA L ++E G L L G+ DDA
Sbjct: 436 YNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLG 495
Query: 246 EMQIKTHPPNRPVY 259
M+ K PN Y
Sbjct: 496 AMEAKGCIPNVYTY 509
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 35/176 (19%)
Query: 95 CQQC-VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS---GKMREAQEFLQELSDK 150
C QC + F M+++G P T+ ILV+ C + G+++EA + +K
Sbjct: 406 CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK 465
Query: 151 GFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG----- 189
G P V + A++++ M +G +P++ T+NSLI +C
Sbjct: 466 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEA 525
Query: 190 --------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
E G D T I A+ K+ M+D+A L +E G + P+ G +
Sbjct: 526 LELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAG--VVPTSGMY 579
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 32/134 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S +I+ GK G +D+A + A C V YNSL +C FV M
Sbjct: 473 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAM 532
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG VPD T+ +++A C QE+ DK A + + ++ G V
Sbjct: 533 VEKGCVPDTITYGTIISALCK-----------QEMVDK--------ALALFDGSLEAGVV 573
Query: 173 PDLETFNSLIETIC 186
P + SLI+ +C
Sbjct: 574 PTSGMYFSLIDGLC 587
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------FN----- 153
+H + +++R + PD T IL+ + SGK+ +A F+++L KG FN
Sbjct: 1 MHTVYDKLVRI-YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISG 59
Query: 154 ----PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCAD 196
+ A+ + + M K G P+ T+N+L+ +C G + G D
Sbjct: 60 LCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPD 119
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + K +DEA ++ V+ G
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGAVKRG 150
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 56/217 (25%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTI 126
+++A ++ K C+ ++ YN+L R ++R+G+ P+ T+ I
Sbjct: 239 LESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNI 298
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
L++ ++ EA E L +K G PD T+ I+ +C
Sbjct: 299 LIDGLLKEDRVNEAFELFSGL-------------------VKHGLEPDAITYTVFIDGLC 339
Query: 187 KSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK---- 229
K+G E G DV ++ I + KE +DEA LL + G
Sbjct: 340 KAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAI 399
Query: 230 LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
F +L G++ A F EM + P Y
Sbjct: 400 SFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 436
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 46/207 (22%)
Query: 95 CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C++C L ++ H+ F M +G VP+ T T L+N C +G++ A E Q++ KG
Sbjct: 313 CKECQL-EDANHL-FKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKA 370
Query: 155 PV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN 198
+ R A++ V +M K+G +PD T+ +L++ CK G+L L ++
Sbjct: 371 DLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMR 430
Query: 199 TNKIS-------------IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
+ I + ++ I +A R L ++ G K P G + D FC
Sbjct: 431 KEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLK--PDDGTYTMVMDGFC 488
Query: 243 ----------FFSEMQIKTHPPNRPVY 259
EMQ H P Y
Sbjct: 489 KKGDVKMGFKLLKEMQSDGHIPGVITY 515
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R G PD T+T++++ +C G ++ + L+E+ G P V + ++N + KQG
Sbjct: 468 MLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQ 527
Query: 172 ----------------VPDLETFNSLIETICKSGELGLCADVNT 199
VPD T+N L++ CK G+LG +V T
Sbjct: 528 VKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKT 571
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 40/192 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++ ++ G+ P+ T +L+N C GK+++AQ E+ G P S ++N K
Sbjct: 220 YLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCK 279
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL-------------GLCADVNT 199
G++ PD+ T+++LI+ +CK +L GL + T
Sbjct: 280 SGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVT 339
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQ 248
I K +D A + + G K L+ +L G F +A F EM
Sbjct: 340 FTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMT 399
Query: 249 IKTHPPNRPVYA 260
+ P++ Y
Sbjct: 400 KRGLIPDKFTYT 411
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 42/207 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF------ 117
T ++++ K G + +A +F++ Q + +N+L C + +GF
Sbjct: 234 TFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVM 293
Query: 118 -----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
PD T++ L++ C ++ +A +E+ D+G P + ++N K G V
Sbjct: 294 EEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRV 353
Query: 173 ----------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
DL +N+LI+ +CK G + GL D T
Sbjct: 354 DLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTL 413
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+ KE ++ A + +V++G +L
Sbjct: 414 LDGSCKEGDLELALEMRKEMVKEGIQL 440
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 29/117 (24%)
Query: 140 AQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE----------------TFNSLIE 183
A EF E+ D G+ P V + ++N++ K+G V D + +FN+LI
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLIN 275
Query: 184 TICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
CKSG E + DV T I + KE +++A L + + G
Sbjct: 276 GYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRG 332
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 90/232 (38%), Gaps = 62/232 (26%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
S+II+ KHG +DNA +FN+ M KG + T+ IL
Sbjct: 365 SIIIDGLCKHGSLDNAFNLFNE----------------------MEMKGITTNIITYNIL 402
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGS 171
+ +C++G+ + + L+++ + NP V R A+++ +MI +G
Sbjct: 403 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 462
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
PD T+ SLI+ CK L G ++ T I I K ID+
Sbjct: 463 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLE 522
Query: 219 LLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L + G + F LG+ + A F EM + PPN Y
Sbjct: 523 LFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 574
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 39/185 (21%)
Query: 95 CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C++ L ++++ ++I+ G+ P+ T + L+N C G++ EA E + + + G P
Sbjct: 234 CRKLCLAFSAMG----KIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 289
Query: 155 PVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGELGLCADV- 197
+ + +VN KM++ G P+ T+ ++ +CKSG+ L ++
Sbjct: 290 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 349
Query: 198 ---NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
I + AV +ID LC H G D+AF F+EM++K
Sbjct: 350 RKMEERNIKLDAVKYSIIIDG----LCK-----H------GSLDNAFNLFNEMEMKGITT 394
Query: 255 NRPVY 259
N Y
Sbjct: 395 NIITY 399
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 37/230 (16%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+ PD++ T + +I+ F K +D A ++ + + C + +N L C
Sbjct: 462 IAPDTI-----TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 516
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F +M +G V D T+ L+ +C GK+ A+E QE+ + P + + K
Sbjct: 517 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 576
Query: 162 MVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+++ + G S LE F E I KS + D+ I I + +D+A+ L
Sbjct: 577 LLDGLCDNGESEKALEIF----EKIEKS---KMELDIGIYNIIIHGMCNASKVDDAWDLF 629
Query: 221 CNL----VEDGHKLFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
C+L V+ G K + + G +A F +M+ H P+ Y
Sbjct: 630 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTY 679
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
+ +E M + S T + II+ ID+A+E+ + + C+ ++ +N+L +
Sbjct: 517 RVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGL 576
Query: 108 CFV-----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C V M+R PD+ T ++ + C G + +A E L+ +++ G P
Sbjct: 577 CGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNS 636
Query: 157 RSAKQMVNKMIKQG--------------SVPDLETFNSLIETICKSGEL----------- 191
+ +V+ ++K G PDL T+N++I + K+G++
Sbjct: 637 STYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMV 696
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFF 244
GLC D T + V +E D A R+L + + G L P ++D F
Sbjct: 697 SNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTG--LSPDTTFYNDVLLGF 749
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 100/253 (39%), Gaps = 49/253 (19%)
Query: 7 AKTSKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIE--LMKPDSLSVFP 64
A ++ D A+N ++N+ H + L + WK +E L + S + P
Sbjct: 330 AMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAP 389
Query: 65 Q--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV---------- 110
T + I+ + GL+D A+EV + + C ++ Y+S+ +C V
Sbjct: 390 DEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELL 449
Query: 111 -RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
R+ G PD +T ++ CS+ + A+E + E M+
Sbjct: 450 SRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAE-------------------MLCS 490
Query: 170 GSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEA 216
PD TFN+++ ++C+ G E G D+ T I + E ID+A
Sbjct: 491 DCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDA 550
Query: 217 FRLLCNLVEDGHK 229
LL +L G K
Sbjct: 551 MELLSDLQSCGCK 563
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 51/188 (27%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------KGF 117
+++I+ G + +A VF A V+ YN++ + R R F
Sbjct: 191 NILIKRLCSDGRVSDAERVF---AALGPSATVVTYNTMVNGYCRAGRIEDARRLINGMPF 247
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQ 161
PD T L+ A C G++ +A ++ +G +P V R A
Sbjct: 248 PPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMA 307
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++++M +G PD+ T+N LI +C G+ +DEA +L
Sbjct: 308 LLDEMRAKGCEPDIVTYNVLINAMCNEGD----------------------VDEALNILS 345
Query: 222 NLVEDGHK 229
NL G K
Sbjct: 346 NLPSHGCK 353
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 40/191 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ +G P T++IL++A C R+A L E+ KG P + + ++N M
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333
Query: 169 QGSV----------------PDLETFNSLIETICKSGELG----LCADVNTNKIS----- 203
+G V PD T+ +++++C S L A++ +N +
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT 393
Query: 204 ----IPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ ++ ++ ++D A ++ ++ E G + L G+ DDA S ++
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLK 453
Query: 249 IKTHPPNRPVY 259
P+ Y
Sbjct: 454 SYGCKPDTIAY 464
>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 595
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 79/241 (32%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVR 111
QT ++I F K G+I A +F+ + V+ Y+S+ H F
Sbjct: 289 QTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDL 348
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------- 154
MIRKG +P+ T+T L++ WC M +A FL E+ + G +P
Sbjct: 349 MIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGK 408
Query: 155 PVRSAKQMVNKMIKQGSVPDLET-----------------------------------FN 179
PV +AK++ M K G +PDL+T ++
Sbjct: 409 PV-AAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYS 467
Query: 180 SLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
++ +C SG+L G+ DV T I I + KE ++D+A LL + E+
Sbjct: 468 IILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEEN 527
Query: 227 G 227
G
Sbjct: 528 G 528
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 29/147 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+++ K G++ A ++F++ T Q + YN L +C M+RKG
Sbjct: 224 VVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKG 283
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
+PD +T ++ + +G + A+ + G V + A
Sbjct: 284 IMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAM 343
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICK 187
++ + MI++G +P++ T+ SLI C+
Sbjct: 344 EVFDLMIRKGCLPNIVTYTSLIHGWCE 370
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
D ++I++N CSSGK+ +A E LS KG V + M+N + K+G + D E
Sbjct: 462 DIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAE--- 518
Query: 180 SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ + K E G D T + + + + + I ++ + L
Sbjct: 519 ---DLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYL 556
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T II K G A+ K NC V YN++ +C F +M
Sbjct: 185 TRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQM 244
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG PD T+ L++ C+ + +EA L + KG P V++ + + +K G +
Sbjct: 245 TGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMI 304
Query: 173 PDLETFNSLIETICKSGELGLCADVNT 199
++ S + G +G+ DV T
Sbjct: 305 SRAKSIFSFM------GHMGIEHDVVT 325
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG- 170
M + G P T T +VN C G + +A F+ L D G+ + ++N + K G
Sbjct: 139 MFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGH 198
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
S L + E C DV + + K+ M+ EA+ L + G
Sbjct: 199 SSAALSYLKKMEEQNCN-------LDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKG 248
>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 780
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 30/173 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W+T+E +K +SV ++I + K GL + AVE F + F+C+ V YN +
Sbjct: 112 WQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRI 171
Query: 109 FVR--------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+R M++ P+ T IL++ G+ +AQ+ +++ +G +P
Sbjct: 172 MMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+++ +M G+ PD N+L++ CK G +
Sbjct: 232 NRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRM 284
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 37/150 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRM 112
+KPD + +++I+ K G I++A+++ + YN++ +C +
Sbjct: 334 IKPDII-----LYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGL 388
Query: 113 IRKG-----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ +G PD THTIL+ + C +G +R+A+E E+
Sbjct: 389 LEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIE------------- 435
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL 191
K G P + TFN+LI+ +CKSGEL
Sbjct: 436 ------KSGCSPSVATFNALIDGLCKSGEL 459
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 27/191 (14%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++++ K G +A ++F+ T + Y L +C F M
Sbjct: 200 TFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEM 259
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD H L++ +C G+M EA E L+ GF +R +++ + +
Sbjct: 260 KASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRA--- 316
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
+ E + + D+ I I +SK I++A +LL ++ P
Sbjct: 317 ---RRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSM--------P 365
Query: 233 SLGQFDDAFCF 243
S G D +C+
Sbjct: 366 SKGITPDTYCY 376
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 42/201 (20%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 83 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + +
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYE 202
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
+ KM+ G L TFN L+ +CK G++ G+ ++ T + I +
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262
Query: 209 KEFMIDEAFRLLCNLVEDGHK 229
+ +D A R++ L+E G K
Sbjct: 263 QRGELDGAVRMVGCLIEQGPK 283
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 35/157 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
MI KG+ PD T IL++ + + KM A E L + D G +P V + ++N
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSK 511
Query: 166 ----------MIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
M+++G P+L TFN L+E++C+ + LGL ++ ++ AV+
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
+ID F G D A+ F +M+
Sbjct: 572 LIDG---------------FCKNGDLDGAYTLFRKME 593
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSA 159
GFVPD+ T+ L++ C G+ A E KG P V A
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
Q+ N+M ++G +P+++TFN L+ +CK G G D+ T I I
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
S + ++ A +L ++++G
Sbjct: 471 YSTQLKMENALEILDVMLDNG 491
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 45/195 (23%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT-AFNCQQCVLLYN------- 103
+E MK S++ T +I+ F K+G +D A +F K A+ YN
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFT 613
Query: 104 -SLHVC-----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-- 155
L+V F M+ + PD T+ ++V+ +C +G + +FL E+ + GF P
Sbjct: 614 EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLT 673
Query: 156 --------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNK 201
V A ++++M+++G VP+ + TIC DV+ +
Sbjct: 674 TLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE------AVNTIC---------DVDKKE 718
Query: 202 ISIPAVSKEFMIDEA 216
++ P + E ++ ++
Sbjct: 719 VAAPKLVLEDLLKKS 733
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 49/206 (23%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------- 105
V P T +L I+ + G +D AV + + V+ YN+L
Sbjct: 246 GVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
V +M+ +G PD T+ L+ +C G V+ A+++V
Sbjct: 306 EVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM-------------------VQLAERIVGD 346
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
+ G VPD T+ SLI+ +C GE G+ +V I +S + M
Sbjct: 347 AVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGM 406
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFD 238
I EA +L + E G L P + F+
Sbjct: 407 ILEAAQLANEMSEKG--LIPEVQTFN 430
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 34/148 (22%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
S FP T +++I + ++NA+E+ + V YNSL +C
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFE 513
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
+ M+ KG P+ T IL+ + C K+ EA L+E+ +K N
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVN---------- 563
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL 191
PD TF +LI+ CK+G+L
Sbjct: 564 ---------PDAVTFGTLIDGFCKNGDL 582
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +I+ GK G +D+A ++ + + ++Y SL H F M
Sbjct: 479 TFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEM 538
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
I +G PD R ++ +G+ + + +E+ +GF P V S +++ ++K
Sbjct: 539 IHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFA 598
Query: 169 ------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
QG V D +N+ I+ CKSG++ G V T
Sbjct: 599 RETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSV 658
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTH 252
I ++K +DEA+ L +G +L F +G+ D+A+ E+ K
Sbjct: 659 IDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 718
Query: 253 PPN 255
PN
Sbjct: 719 TPN 721
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 60/264 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC- 108
++ MK + L ++ I+ FGK G +D A + F++ + + Y S+ +C
Sbjct: 256 LDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCK 315
Query: 109 ----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
F +M + VP + ++ + S+GK EA L+ +G P V +
Sbjct: 316 GNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIA 375
Query: 159 AKQMVNKMIKQG---------------SVPDLETFNSLIETICKSGEL------------ 191
++ + K+G + P+L T+N LI+ +CK+GE+
Sbjct: 376 YNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKE 435
Query: 192 -GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED-GHKL-------FPSL-------G 235
GL +V T I I + K +DEA C++ E HK+ F SL G
Sbjct: 436 AGLFPNVMTVNIMIDRLCKAKKLDEA----CSIFEGMNHKICSPDEVTFCSLIDGLGKQG 491
Query: 236 QFDDAFCFFSEMQIKTHPPNRPVY 259
+ DDA+ + +M PN VY
Sbjct: 492 RVDDAYRLYEQMLDSDKIPNAVVY 515
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 29/165 (17%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK---------CTAFNCQQCVLL-- 101
E K + L + S +I+ FGK G ID A + + +NC L+
Sbjct: 676 EEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 735
Query: 102 --YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
N VCF M P+ T++IL+N C K +A F QE+ +G P +
Sbjct: 736 EEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITY 795
Query: 160 KQMVNKMIK----------------QGSVPDLETFNSLIETICKS 188
M+ + K G VPD ++N++IE + S
Sbjct: 796 TTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYS 840
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
F + +K VPD T+T L++ C SG++ + E+ D+G P V + ++
Sbjct: 361 FEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCK 420
Query: 164 -----------NKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
NKM Q P++ TF L++ +CK G L G C +V T
Sbjct: 421 NGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRT 480
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I + KE ++DEA L + ++G
Sbjct: 481 YTVMINGLCKEGLLDEALALQSRMEDNG 508
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 101/252 (40%), Gaps = 72/252 (28%)
Query: 54 LMKPDSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
L + + S+ P + S+II+ K L+D A +++ +
Sbjct: 186 LRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTE---------------------- 223
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ KG PD T++ILV+ +C G++ A + L E+ + NP + + +V+ + K+G
Sbjct: 224 MVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGK 283
Query: 172 VP----------------DLETFNSLIETICKSGE-------------LGLCADVNTNKI 202
V D+ +++L++ C E +G+ DV+ I
Sbjct: 284 VKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSI 343
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL-------GQFDDAFCFFSEM 247
I + K +DEA NL E+ H+ + SL G+ + F EM
Sbjct: 344 MINGLCKIKRVDEAL----NLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEM 399
Query: 248 QIKTHPPNRPVY 259
+ PP+ Y
Sbjct: 400 LDRGQPPDVITY 411
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ K+G +D A+ +FNK M + P+ T T
Sbjct: 410 TYNNLIDALCKNGHLDRAIALFNK----------------------MKDQAIRPNVYTFT 447
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
IL++ C G+++ A EF Q+L KG+ VR+ M+N + K+G + + S +E
Sbjct: 448 ILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRME-- 505
Query: 186 CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ G +D T +I I A + D+A +L+ ++ G
Sbjct: 506 ----DNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 46/230 (20%)
Query: 44 SELSMWKTIEL--MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
+ +S++K +EL ++PD TL++II F G Q VL
Sbjct: 76 TAISLYKQMELSEVEPDYF-----TLNIIINCFCHFG------------------QVVLA 112
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
++ + ++++ G+ P+ T L+ C GK++EA F ++ +GF S
Sbjct: 113 FSGVS----KILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGI 168
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++N + K G + I + + + +V + I + K+ ++DEA+ L
Sbjct: 169 LINGVCKIGET------RAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYT 222
Query: 222 NLVEDG-------HKLFPS----LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+V G + + S +GQ + A +EM ++ P+ Y
Sbjct: 223 EMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYT 272
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 105/263 (39%), Gaps = 55/263 (20%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
++ M + P +S +I F K G + A + N+ + V+ YNS+ +
Sbjct: 250 VQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDAL 309
Query: 108 CFVR-----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C R M+ KG PD T+T +++ + SG +E+ + ++++ KG P +
Sbjct: 310 CKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGI 369
Query: 157 ----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------- 191
+ A+++ M +G +PDL +++ L+ G
Sbjct: 370 VTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHS 429
Query: 192 ----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
G+ A+ + I I A +K M+DEA + + G + F +G+
Sbjct: 430 MADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGR 489
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
DA FS+M PN VY
Sbjct: 490 LADAMEKFSQMISIGLEPNTVVY 512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMI 113
S II G + +A +VFN + ++ +NSL C V M+
Sbjct: 548 FSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMV 607
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------R 157
G PD T+ LV+ +C SGK+ + +E+ K P
Sbjct: 608 SVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTS 667
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+AK+M ++MI G+ D++T+ L++ +C++
Sbjct: 668 AAKKMFHEMIDSGTAVDIDTYKILLKGLCRN 698
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 65/190 (34%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------I 113
+++I K G++D A+ VF + + V+ Y++L F RM I
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------------ 155
G P+ + L++ +C G + +A+E + E+ KG P
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRV 561
Query: 156 ----------------------------------VRSAKQMVNKMIKQGSVPDLETFNSL 181
+ A +++ M+ G PD+ T+N+L
Sbjct: 562 MDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTL 621
Query: 182 IETICKSGEL 191
+ CKSG++
Sbjct: 622 VSGYCKSGKI 631
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 40/155 (25%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAW----CSSGKMREAQE-FLQELSDKG-------FNPPV 156
F R++R G RT TI N + C + + EA + L +SD G +N +
Sbjct: 179 FARLLRAGL----RTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVI 234
Query: 157 RS---------AKQMVNKMIKQGS--VPDLETFNSLIETICKSGEL-------------G 192
+S A MV +M K+G PD+ +FN++I K GE+ G
Sbjct: 235 KSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKG 294
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ DV T + A+ K +D+A +L +V+ G
Sbjct: 295 VEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKG 329
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/120 (17%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK---------- 115
T ++++ ++ L D A+ +F+K A +C+ + + N++ ++ R+
Sbjct: 687 TYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAI 746
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G VP+ T+ ++++ G + EA + G P R ++ ++++G +
Sbjct: 747 STSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI 806
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++++ K ++ A +V K V+ +NSL F + M
Sbjct: 216 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 275
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ KG P+ T++ L++ C S K EA+E L+E+ +G P +
Sbjct: 276 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKI 335
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+QM+ +M G PD+ ++S+I CKSG+L
Sbjct: 336 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 370
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 50/213 (23%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD+ + P II G +D A++ + C V+ Y +L F R
Sbjct: 145 PDAFTHTP-----IITAMANAGDLDGAMDHLR---SMGCDPNVVTYTALIAAFARAKKLE 196
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
M +G P+ T+ +LV+A C + AQ+ ++++ + GF P V +
Sbjct: 197 EAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLV 256
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
A++++ M+ +G P++ T+++LI+ +CKS + G+
Sbjct: 257 DGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVT 316
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
D T I + K I+EA ++L + G
Sbjct: 317 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG 349
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM G PD ++ +++A+C SGK+ EAQ+ LQE+ + +P V + +++ + K G
Sbjct: 344 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 403
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ + + ++E + +SG+ + DV T I + K M+ EA +LL + + G
Sbjct: 404 KIAEAQV---ILEQMQESGD--VLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG 455
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
RM + G PD T+T +++ C G++ EA+ LQ + G P
Sbjct: 450 RMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKAR 509
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A++++ +M G P+L T+N+++ +C SG +
Sbjct: 510 KVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRI 546
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
+S V P T S +I K ++ A ++ ++ C V+ Y ++ +C
Sbjct: 417 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRL 476
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
M R G P+ T+T L++ C + K+ EA+ ++E+ + G P + + M
Sbjct: 477 EEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTM 536
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
VN + G + + + L++ + K G D T + + A+ ++ EA +LL
Sbjct: 537 VNGLCVSGRIKEAQ---QLVQRM-KDGRAECSPDAATYRTIVNALMSSDLVQEAEQLL 590
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 30/151 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIR 114
S II F K G + A + + V+ YN++ V +M
Sbjct: 358 SSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQE 417
Query: 115 KGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------R 157
G V PD T++ ++N C S + EAQ+ L + G NP V
Sbjct: 418 SGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLE 477
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A+ ++ M + G P++ T+ +LI +CK+
Sbjct: 478 EAEYLLQGMKRAGCAPNVVTYTTLISGLCKA 508
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 37/179 (20%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
PD ++ I+++ +C++G + A E L+E+ GF P + ++ M G +
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH 169
Query: 173 -------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
P++ T+ +LI ++ +L G ++ T + + A+ K M
Sbjct: 170 LRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 229
Query: 213 IDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ A ++ ++E G F SL G DDA M K PN Y+
Sbjct: 230 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYS 288
>gi|302143887|emb|CBI22748.3| unnamed protein product [Vitis vinifera]
Length = 518
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 54/249 (21%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN------------ 94
+MW+ ++ M V +T ++I G+ GL AVE F K FN
Sbjct: 211 AMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAIL 270
Query: 95 -CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
C C+ Y + + +M+ + + PD T+ I++ GK+ + L+EL GF+
Sbjct: 271 HCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFS 330
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P + A ++N M + G P + F +LI+ + ++G L C
Sbjct: 331 PDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDAC--- 387
Query: 198 NTNKISIPAVSKEFMIDEAFRLLC-------NLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250
++ DE +L C ++ G+ + G+ + A F EM +K
Sbjct: 388 ------------KYFFDEMIKLGCMPDVVCYTVMITGYIV---AGELEMAQGLFEEMTVK 432
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 433 GQLPNVFTY 441
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS--- 158
F MI+ G +PD +T+++ + +G++ AQ +E++ KG +N +R
Sbjct: 391 FDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCM 450
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+ M+ +M +G P+ +N+L+ + +G+L
Sbjct: 451 AEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKL 489
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 31/159 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+ RM G P RT+T+LV A C SG+ EA E+ ++G P V +
Sbjct: 278 WARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCK 337
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------LGL------CADVNT 199
A +M+N+M+++G P + FN+LI + CK G LGL C +V T
Sbjct: 338 EGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRT 397
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
I + +D A LL +VE KL P + ++
Sbjct: 398 YNELICGFCRGKSMDRAMALLNKMVES--KLSPDVVTYN 434
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M +G P+ T+T+L++ C G+M EA + L E+ +KG P V ++ K
Sbjct: 313 FGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCK 372
Query: 169 QGSV----------------PDLETFNSLIETICKSG-------------ELGLCADVNT 199
+G + P++ T+N LI C+ E L DV T
Sbjct: 373 RGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVT 432
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I + + ++D A RL ++ DG
Sbjct: 433 YNTLIHGLCEVGVVDSASRLFRLMIRDG 460
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 57/253 (22%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC 108
+ LM+ + +T + +I F + +D A+ + NK V+ YN+L +C
Sbjct: 382 VLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLC 441
Query: 109 -----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------- 150
F MIR GF PD+ T + C G++ EA + L+ L +K
Sbjct: 442 EVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEH 501
Query: 151 -------GF--NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCAD- 196
G+ + A + +M+ + +P+ TFN +I+ + K G++ L D
Sbjct: 502 AYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDM 561
Query: 197 --------VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQF 237
++T I + V KE+ D A +L L+ G+ K + S G+
Sbjct: 562 AKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRL 621
Query: 238 DDAFCFFSEMQIK 250
++A EM IK
Sbjct: 622 EEA----EEMVIK 630
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 38/140 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I+ K G +D A+++ N+ M+ KG P
Sbjct: 327 TYTVLIDYLCKEGRMDEALKMLNE----------------------MVEKGVAPSVVPFN 364
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
L+ ++C G M +A L + K P VR+ A ++NKM++
Sbjct: 365 ALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVES 424
Query: 170 GSVPDLETFNSLIETICKSG 189
PD+ T+N+LI +C+ G
Sbjct: 425 KLSPDVVTYNTLIHGLCEVG 444
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 54/196 (27%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAW-------------------------------CSSGKM 137
FVR++R PD T+T LV + C +GK+
Sbjct: 212 FVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKL 271
Query: 138 REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCAD 196
EA EF + + G P VR+ +V + + G + L F + E C+ +
Sbjct: 272 HEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCE-------PN 324
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCF 243
V T + I + KE +DEA ++L +VE G + PS+ G +DA
Sbjct: 325 VYTYTVLIDYLCKEGRMDEALKMLNEMVEKG--VAPSVVPFNALIGSYCKRGMMEDAVGV 382
Query: 244 FSEMQIKTHPPNRPVY 259
M+ K PN Y
Sbjct: 383 LGLMESKKVCPNVRTY 398
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I+ K G + +A+ + F+ + + YN L + R+
Sbjct: 537 TFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRL 596
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVR-------- 157
I G+ P+ T+T + A+CS G++ EA+E + ++ ++G +N +
Sbjct: 597 ISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLL 656
Query: 158 -SAKQMVNKMIKQGSVPDLETFNSL-----IETICKSGELGLCADVNTNKISI 204
SA ++ +M G P T++ L IE K G + DV+ IS+
Sbjct: 657 DSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISV 709
>gi|225470179|ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Vitis vinifera]
Length = 514
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 54/249 (21%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN------------ 94
+MW+ ++ M V +T ++I G+ GL AVE F K FN
Sbjct: 207 AMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAIL 266
Query: 95 -CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
C C+ Y + + +M+ + + PD T+ I++ GK+ + L+EL GF+
Sbjct: 267 HCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFS 326
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P + A ++N M + G P + F +LI+ + ++G L C
Sbjct: 327 PDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDAC--- 383
Query: 198 NTNKISIPAVSKEFMIDEAFRLLC-------NLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250
++ DE +L C ++ G+ + G+ + A F EM +K
Sbjct: 384 ------------KYFFDEMIKLGCMPDVVCYTVMITGYIV---AGELEMAQGLFEEMTVK 428
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 429 GQLPNVFTY 437
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS--- 158
F MI+ G +PD +T+++ + +G++ AQ +E++ KG +N +R
Sbjct: 387 FDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCM 446
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+ M+ +M +G P+ +N+L+ + +G+L
Sbjct: 447 AEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKL 485
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T +++++ K G++ A VF T + + YN+L C R M
Sbjct: 305 TFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM 364
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
IRKG P ++ IL+N +C S +M EA+ L E+ K NP
Sbjct: 365 IRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP 424
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A + +M G P+L T+ L++ CK G L
Sbjct: 425 KEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHL 459
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 21/158 (13%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M + G PD T L+N C+ GK++EA E E+ +G P V S ++N + K G
Sbjct: 153 KMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTG 212
Query: 171 SVP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-- 227
+ ++ F + + CK +V T I ++ K+ ++++A L +VE G
Sbjct: 213 NTSMAVDVFKKMEQNGCK-------PNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIP 265
Query: 228 ----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
H F +LGQ ++A F EM + PN
Sbjct: 266 PNVFTYNSIVHG-FCNLGQLNEATRLFKEMVGRDVMPN 302
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S II+ K L+++A+E ++ V YNS+ C F M
Sbjct: 235 TYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM 294
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ + +P+ T TILV+ C G + EA+ + +++KG P + +
Sbjct: 295 VGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLM 354
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
AK++ MI++G P ++N LI CKS
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILINGYCKS 386
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 43/244 (17%)
Query: 25 VRHDIYAERTL----NRLNLTLISELSMWKTIEL-MKPDSLSVFPQTLSLIIEEFGKHGL 79
V H++Y+ L RLN S + K +L + PD++ T + +I G
Sbjct: 124 VTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAI-----TFNALINGLCNEGK 178
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTI 126
I AVE+FN+ + V+ Y ++ +C F +M + G P+ T++
Sbjct: 179 IKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYST 238
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQG 170
++++ C + +A EFL E+ ++G P V A ++ +M+ +
Sbjct: 239 IIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRD 298
Query: 171 SVPDLETFNSLIETICKSG---ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+P+ TF L++ +CK G E L + T K P +S + + + L L+ +
Sbjct: 299 VMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGY-CLQRLMNEA 357
Query: 228 HKLF 231
K+F
Sbjct: 358 KKVF 361
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++++ F KHG +D A+++ + ++ Y L F ++
Sbjct: 445 TYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKL 504
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
G PD RT+T+++ G EA + +++ D GF P S M+ ++
Sbjct: 505 FGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQ 560
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 29/141 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M+ +G +PD +TH++L++ +GK++EA EL DKG P V
Sbjct: 605 FRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCK 664
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
++A ++ + M K+G P++ T+N+LI +CK GE+ GL + T
Sbjct: 665 EGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVT 724
Query: 200 NKISIPAVSKEFMIDEAFRLL 220
I K + EAF+L
Sbjct: 725 YSTIIAGYCKSANLTEAFQLF 745
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 42/200 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------VRMIRKG 116
I++ K G + A+++ V YN++ + F V MI KG
Sbjct: 483 IVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKG 542
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----------- 165
P+ T+ ++ +C +G+M+ A+ E+ D G P +++
Sbjct: 543 LKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAF 602
Query: 166 -----MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
M+ QG +PD++T + LI + K+G+L GL DV T I +
Sbjct: 603 AKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNL 662
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
KE + AF L ++ + G
Sbjct: 663 CKEGDLKAAFELHDDMCKKG 682
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 53/212 (25%)
Query: 61 SVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118
V P QT S++I K+G + A+ VF++ ++ KG V
Sbjct: 612 GVLPDVQTHSVLIHGLSKNGKLQEAMGVFSE----------------------LLDKGLV 649
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE-- 176
PD T+T L++ C G ++ A E ++ KG NP + + ++N + K G +
Sbjct: 650 PDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAREL 709
Query: 177 --------------TFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
T++++I CKS L G+ D I K
Sbjct: 710 FDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCK 769
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAF 241
++A L +VE+G P+ D F
Sbjct: 770 AGNTEKALSLFLGMVEEGIASTPAFNALIDGF 801
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 28/147 (19%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR--------KGF--- 117
++I+ + K G ++ AV VF + NSL ++ R KG
Sbjct: 168 ILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGA 227
Query: 118 -VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAK 160
VPD T+T L+NA+C GK+ E + L ++ +KG P V A
Sbjct: 228 IVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEAL 287
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICK 187
++ M +G +PD + +LI+ C+
Sbjct: 288 ELKRSMANKGLLPDNYIYATLIDGFCR 314
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 36/171 (21%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
L+ +V + C A + + + L S M KG +PD + L++ +C +
Sbjct: 267 LVTYSVVIAGLCRAGDVDEALELKRS-------MANKGLLPDNYIYATLIDGFCRQKRST 319
Query: 139 EAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD--------------LETFN--SLI 182
E + L E+ G P + ++N +KQ + L TF +LI
Sbjct: 320 EGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALI 379
Query: 183 ETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+CK G+L G+ D+ T I K +++A+ LL
Sbjct: 380 HGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELL 430
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 24/199 (12%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +I K G ++ A ++F++ T + + YN L + + +
Sbjct: 374 TYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEI 433
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
++ + +VN C G + A E QE+ G P + +V ++K+G
Sbjct: 434 KKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGR- 492
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
F I+ + + GL DV I K ++E L ++ G K P
Sbjct: 493 -----FEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLK--P 545
Query: 233 SL---GQFDDAFCFFSEMQ 248
++ G F +C EMQ
Sbjct: 546 NVYTYGAFIHGYCRAGEMQ 564
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 29/148 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVR 157
M+ P+ T+TIL+ C+ G ++EA++ E+ + G+N R
Sbjct: 817 MVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGR 876
Query: 158 SAK--QMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADV---------NTNKI 202
++ + ++M+ +G PD ++ +++ K G L L D+ N I
Sbjct: 877 RSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTI 936
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
I A+ K + E ++L + + G KL
Sbjct: 937 LIDALCKHNNLSEVLKVLDEVEKQGSKL 964
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 33/238 (13%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
S+ + M+ L P+T ++I E + G AV+VF F C Q + +N++
Sbjct: 119 SLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTIL 178
Query: 107 --VC----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C ++ + F D ++ ++VN WC + +A E L+E+ +G P
Sbjct: 179 DVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTP 238
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ S M+ + G + E ++ +E + E+ DV T I I
Sbjct: 239 NLTSYNTMLKGYFRAGQIN--EAWDFFLEMKKRDCEI----DVITYTTVIHGFGVAGEIK 292
Query: 215 EAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPNRPVY 259
A ++ +V+ G + PS+ + D+A F EM +K + PN Y
Sbjct: 293 RARKVFDTMVKKG--VLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITY 348
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-- 106
W MK + T + +I FG G I A +VF+ V YN+
Sbjct: 260 WDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQV 319
Query: 107 -----------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
V F M+ KG+VP+ T+ +++ C G+M A EF+ + D G P
Sbjct: 320 LCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPN 379
Query: 156 VRS----------------AKQMVNKMIKQGSVPDLETFNSLIETIC---KSGELGLCAD 196
V++ A + KM +P+L+T+N LI + KS +L + +
Sbjct: 380 VQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGN 439
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
+ + V ++F + R+L L+ G++ F
Sbjct: 440 LLIEMVDRGFVPRKFTFN---RVLNGLLLTGNQGF 471
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 47/260 (18%)
Query: 34 TLNRLNLTLISELSMWKTIELMKP-DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKC 90
T N L L SE + + ++LM+ + L + P T +++ F K G++ +A + +
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360
Query: 91 TAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKM 137
T N + V++YN L + R M +KG P+ T+ L+ + SG
Sbjct: 361 TERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDW 420
Query: 138 REAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSL 181
R A L E+ +KG VR A +++++M + G P+ T+N++
Sbjct: 421 RSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI 480
Query: 182 IETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH--KLFPSLGQFDD 239
I+ C G + ++ T E R N+V K F +G+ D+
Sbjct: 481 IQGFCDKGNIKSAYEIRTRM-------------EKCRKRANVVTYNVFIKYFCQIGKMDE 527
Query: 240 AFCFFSEMQIKTHPPNRPVY 259
A +EM K PN Y
Sbjct: 528 ANDLLNEMLDKCLVPNGITY 547
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 43/226 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFV- 110
T + +I + G + A +V A+ V YNSL HV +
Sbjct: 193 TFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLL 252
Query: 111 -RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M+ G P T +L+N +C + A +E+ +G V + +++ + +
Sbjct: 253 KEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSE 312
Query: 170 GSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
G V P+ TF +++ CK G+ AD N I +++ +
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK---GMMADAND---WIDGMTERNV- 365
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E ++ N++ D ++ LG+ +DA M K PN Y
Sbjct: 366 -EPDVVIYNILID---VYRRLGKMEDAMAVKEAMAKKGISPNVTTY 407
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL++ A+EV + + C L YN L F + M
Sbjct: 300 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 359
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G PD ++ L+ A C SG++ A E L +L DKG P
Sbjct: 360 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 419
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A +++N+M+ +G PD+ T++++ +C+
Sbjct: 420 KEALELLNEMVSKGLQPDIITYSTIAAGLCR 450
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 120/295 (40%), Gaps = 64/295 (21%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+ ++V + I E T R K ++ M+ + T ++++ + G +
Sbjct: 190 VPDVVTYTILLEATCKRSGYK-----QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 244
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKGFVPDKRTHTIL 127
D+A+E ++ C+ + YN + +C M +KG P+ T +L
Sbjct: 245 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 304
Query: 128 VNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQGS 171
++ C G + A E L+++ G +NP + + A ++ M+ +G
Sbjct: 305 ISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 364
Query: 172 VPDLETFNSLIETICKSGELGL------------CADV--NTNKISIPAVSKEFMIDEAF 217
PD+ ++N+L+ +C+SGE+ + CA V + N + I ++K EA
Sbjct: 365 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV-IDGLTKAGKTKEAL 423
Query: 218 RLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
LL +V G L P + + +DA F ++Q PN +Y
Sbjct: 424 ELLNEMVSKG--LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 476
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R+ VPD T+TIL+ A C ++A + L E+ DKG P + + +VN + ++G
Sbjct: 184 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 243
Query: 172 VPDLETF 178
V D F
Sbjct: 244 VDDAIEF 250
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----HVCFVRMIRKGFVPDKRTHTILVNAW 131
+ G +D A+ + + C L L R + PD + +V +
Sbjct: 77 RRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGY 136
Query: 132 CSSGKMREAQEFLQELSDK----GFNPPVRS---------AKQMVNKMIKQGSVPDLETF 178
C +G++ A+ + E+ + +N +R A ++++M+++ VPD+ T+
Sbjct: 137 CGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTY 196
Query: 179 NSLIETICK-SG------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
L+E CK SG + G D+ T + + + +E +D+A L NL
Sbjct: 197 TILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS 256
Query: 226 DG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
G K + +++DA EM K PPN
Sbjct: 257 YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN 297
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVC---- 108
++PD + T S I + I++A+ F K + +LYN+ L +C
Sbjct: 434 LQPDII-----TYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 488
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F MI G +P++ T+TIL+ G ++EA++ L EL +G VR K
Sbjct: 489 THSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV---VR--KS 543
Query: 162 MVNK 165
++NK
Sbjct: 544 LINK 547
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 80/213 (37%), Gaps = 47/213 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
P+SLS P ++ F K +D A+ + + C ++ YN+L R
Sbjct: 331 PNSLSYNP-----LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 385
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
+ KG P ++ +++ +GK +EA E L E+ KG P
Sbjct: 386 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 445
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
+ A + K+ G P+ +N++I +CK E G
Sbjct: 446 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 505
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ +T I I ++ E +I EA LL L G
Sbjct: 506 PNESTYTILIEGLAYEGLIKEARDLLDELCSRG 538
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 59 SLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S +P +S ++ + G +D AVE+ ++ C ++ YN++ +
Sbjct: 361 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTK 420
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------- 154
M+ KG PD T++ + C ++ +A ++ D G P
Sbjct: 421 EALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAII 480
Query: 155 -------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAV 207
SA + MI G +P+ T+ LIE + G + D+ S V
Sbjct: 481 LGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540
Query: 208 SKEFMIDEAFRLL 220
K + A RLL
Sbjct: 541 RKSLINKGAIRLL 553
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 34/165 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
++PD+L T + II K ++D A E+ ++ C+ ++ YN L +
Sbjct: 239 LEPDTL-----TYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGK 293
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------P 155
MI G P+ TH+IL+ C GK+ EA L+ + +KG P P
Sbjct: 294 WSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDP 353
Query: 156 VRS----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ + A + + MI G +PD+ +N+++ +C++G+
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGK 398
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T +++I F G +D A+E+F + NC+ V+ Y L + M
Sbjct: 175 TYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEM 234
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ KG PD T+ ++ C + +A E L+ LS +G P +
Sbjct: 235 LSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKW 294
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
++++++MI G P++ T + LI T+C+ G E GL D
Sbjct: 295 SEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPL 354
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTH 252
I +E +D A L ++ DG + + L G+ D A F ++
Sbjct: 355 IAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGC 414
Query: 253 PPNRPVY 259
PPN Y
Sbjct: 415 PPNVSSY 421
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 38/135 (28%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RM +GF+PD T+ I++ ++CS GK+ A E +EL P V +
Sbjct: 163 RMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDG 222
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +++++M+ +G PD T+N++I +C KE M+D
Sbjct: 223 GIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC----------------------KEMMVD 260
Query: 215 EAFRLLCNLVEDGHK 229
+AF LL +L G K
Sbjct: 261 KAFELLRSLSSRGCK 275
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 102/272 (37%), Gaps = 71/272 (26%)
Query: 34 TLNRLNLTLISELSMWKTIELMKPDSLSVFPQ----TLSLIIEEFGKHGLIDNAVEVFNK 89
T N L TL+S W E + + +S+ + T S++I + G ++ AV +
Sbjct: 280 TYNILLRTLLSR-GKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRS 338
Query: 90 CTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGK 136
+ Y+ L F R MI G +PD + ++ C +GK
Sbjct: 339 MKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGK 398
Query: 137 MREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNS 180
+A E ++L + G P V S A +M+ K++ QG PD T+NS
Sbjct: 399 ADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNS 458
Query: 181 LIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF--- 237
LI +C+ G M+DEA LL ++ ++ P++ +
Sbjct: 459 LISCLCRDG----------------------MVDEAIELLVDMQSGRYR--PNVVSYNII 494
Query: 238 ----------DDAFCFFSEMQIKTHPPNRPVY 259
+DA + M K PN Y
Sbjct: 495 LLGLCKVNRANDAIEVLAAMTEKGCQPNETTY 526
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 28/144 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------FNPPV--------- 156
M+ KG+ PD T L+ + +S + +A ++ L G +N +
Sbjct: 95 MVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYGKPDVFAYNALISGFIKANQL 154
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD-------------VNTNKIS 203
+A +++++M +G +PD+ T+N +I + C G+L L + V T I
Sbjct: 155 ENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTIL 214
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I A + ID A +LL ++ G
Sbjct: 215 IEATILDGGIDVAMKLLDEMLSKG 238
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 29/135 (21%)
Query: 121 KRTHTI-LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN--------------- 164
K H + L+N C +GK E+ FL+ + DKG+ P V +++
Sbjct: 68 KEVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVM 127
Query: 165 KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEF 211
+++++ PD+ +N+LI K+ +L G DV T I I +
Sbjct: 128 EILERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRG 187
Query: 212 MIDEAFRLLCNLVED 226
+D A + L++D
Sbjct: 188 KLDLALEIFEELLKD 202
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 32/199 (16%)
Query: 31 AERTLNRLNLTLISELSM---WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF 87
+ T + L ++L+ + S+ W + M V +++++ + + G ++ A ++
Sbjct: 501 SSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLW 560
Query: 88 NKC------------TAFNCQQCVL-LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
N+ AF C+ L + F M+RKGFVP+ + L+ +C
Sbjct: 561 NEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKV 620
Query: 135 GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETF 178
GK+ EA + ++E++ +G P + + ++ + KQG + PD+ T+
Sbjct: 621 GKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTY 680
Query: 179 NSLIETICKSGELGLCADV 197
N+LI+ CK+ ++G D+
Sbjct: 681 NTLIDGYCKAFDVGGADDL 699
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 46/216 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN--------------SLHVCFVR 111
T +L+I EF + G + + F C+ V YN +LH+ +
Sbjct: 259 TFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNL- 317
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
MI G P T +++A+C G + A+++ E+ D G +
Sbjct: 318 MIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARD 377
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKI 202
+ A + +M + VPD TFN+L+ + G+ GL D + +
Sbjct: 378 ISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDV 437
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
++ + DEA +LL NL+E G + PS+ F+
Sbjct: 438 TVAGLCWAGRYDEAMKLLENLLEKG--IPPSVVAFN 471
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-CFVRMIRKGFVPDKRTHTILV 128
++ E K GL+ + V N C+Q + L + F+ M R G PD T+ L+
Sbjct: 629 LVREMNKRGLLPDIFTV-NMIICGLCKQGRM---KLAIETFMDMCRMGLSPDIVTYNTLI 684
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSV 172
+ +C + + A + + ++SD G+ P + A ++ ++I G V
Sbjct: 685 DGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIV 744
Query: 173 PDLETFNSLIETIC 186
P+ T+N++I +C
Sbjct: 745 PNTVTYNTMINAVC 758
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 28/152 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T+++II K G + A+E F ++ YN+L C ++M
Sbjct: 644 TVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKM 703
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G+ PD T+ I ++ +C+ K+ A L+EL G P + M+N
Sbjct: 704 SDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILD 763
Query: 165 -------KMIKQGSVPDLETFNSLIETICKSG 189
K++K VP+ T N L+ CK G
Sbjct: 764 HAMILTAKLLKMAFVPNTVTVNVLLSQFCKQG 795
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 36/211 (17%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
S+W ++ VFP ++ I GL+ +A +VF+ +YNS
Sbjct: 558 SLWNEMK-----GRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNS 612
Query: 105 LHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L F + M ++G +PD T +++ C G+M+ A E ++ G
Sbjct: 613 LIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMG 672
Query: 152 FNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA 195
+P V A ++ KM G PDL T+N I C ++
Sbjct: 673 LSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAV 732
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+ IS+ V + +CN++ D
Sbjct: 733 MILEELISVGIVPNTVTYNTMINAVCNVILD 763
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 44/193 (22%)
Query: 111 RMIR----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK- 165
R++R G + D + V C +G+ EA + L+ L +KG P V + ++
Sbjct: 418 RLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAY 477
Query: 166 ---------------MIKQGSVPDLETFNSLIETICKSGEL--GLCADVNTNKISIPAVS 208
M+K G P T +SL+ ++ + G L A + P +
Sbjct: 478 GNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTN 537
Query: 209 KEF--MIDEAFRL-LCNLVED------GHKLFPSL-------------GQFDDAFCFFSE 246
F ++D FR+ N+ E G +FP G DA+ FS+
Sbjct: 538 MAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSD 597
Query: 247 MQIKTHPPNRPVY 259
M K PN VY
Sbjct: 598 MLRKGFVPNNFVY 610
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 32/152 (21%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR- 111
E MK L T + +I+ +GK G++ AV VF + C+ V+ YNSL CF +
Sbjct: 275 EEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKF 334
Query: 112 ------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
M ++G P+ T++ L++A+C +G + EA +F +
Sbjct: 335 ERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVD------------- 381
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
MI+ G P+ T+ SLI+ CK G+L
Sbjct: 382 ------MIRVGLQPNEFTYTSLIDANCKIGDL 407
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 27/156 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M KG PD T+ L++ + G + A +E+ D G P V + ++N
Sbjct: 274 FEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCK 333
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
M ++G P++ T+++LI+ CK+G L + I + EF
Sbjct: 334 FERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFT 393
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
C +G ++AF SEMQ
Sbjct: 394 YTSLIDANCK-----------IGDLNEAFKLESEMQ 418
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 26/131 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++I+ K GL+ AV F+ M R G P+ +T
Sbjct: 568 TYGVLIDGLCKIGLVQQAVRYFD----------------------HMTRNGLQPNIMIYT 605
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIET 184
L++ C + + EA+ E+ DKG +P +++ +K G+ + L N ++E
Sbjct: 606 ALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEI 665
Query: 185 ICKSGELGLCA 195
EL LCA
Sbjct: 666 ---GMELDLCA 673
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 90/258 (34%), Gaps = 53/258 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRM 112
MK L T S +I+ F K G++ A + F Q Y SL C +
Sbjct: 347 MKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGD 406
Query: 113 IRKGFVPDKR-----------THTILVNAWCSSGKMREAQEFLQELSDKGFN-------- 153
+ + F + T+T L++ C G+MREA+E L G+
Sbjct: 407 LNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTS 466
Query: 154 --------PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ A ++ +M K+ PDL + + I +C+ E+ G
Sbjct: 467 LFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCG 526
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-FPSLGQFDDAFC--------- 242
L A+ I A K EA LL + + G K+ + G D C
Sbjct: 527 LTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAV 586
Query: 243 -FFSEMQIKTHPPNRPVY 259
+F M PN +Y
Sbjct: 587 RYFDHMTRNGLQPNIMIY 604
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 44/211 (20%)
Query: 91 TAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
T FN + + CF +M + +P R+ L++ S K A F +++
Sbjct: 186 TLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVA 245
Query: 151 GFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--- 191
G +P V +A+ + +M +G PD+ T+NSLI+ K G L
Sbjct: 246 GLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGA 305
Query: 192 ----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD--- 238
G DV T I K I +AF L + + G L P++ +
Sbjct: 306 VSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRG--LQPNVVTYSTLI 363
Query: 239 DAFC----------FFSEMQIKTHPPNRPVY 259
DAFC FF +M PN Y
Sbjct: 364 DAFCKAGMLLEANKFFVDMIRVGLQPNEFTY 394
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 32/179 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F MI+ G +PD ++ IL++ C +G M EA EF ++ + G P
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRI 352
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ A ++V +M+ G PDL T+ LI C+ G + GL + T
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVT 412
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHK---LFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ + ++ K IDEA LL + G K L S G ++A + EM K PN
Sbjct: 413 YTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPN 471
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR------------- 114
+++I+ + K G I AV + + ++ +NSL F + +
Sbjct: 511 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 570
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
G VP T+T L+N +C G M + L E+ K P +
Sbjct: 571 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 630
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ Q++ M +G PD T+N++I++ CK+ +L
Sbjct: 631 SVQLLKYMYARGLFPDQITYNTVIQSFCKAHDL 663
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVL--LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
HGL+ +V + C++ + +++ LH M K P + T+T++V C
Sbjct: 571 HGLVPTSVTYTTLMNGY-CEEGDMHSMFDMLH----EMEAKAIKPTQITYTVVVKGLCKE 625
Query: 135 GKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETF 178
G++ E+ + L+ + +G P ++ A Q+ N+M++ P T+
Sbjct: 626 GRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTY 685
Query: 179 NSLIETICKSGEL 191
N LI +C G L
Sbjct: 686 NVLINGLCVYGNL 698
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 42 LISELSMWKTIELMKP-DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
L E + ++++L+K + +FP T + +I+ F K + A ++ N+ + Q
Sbjct: 622 LCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPS 681
Query: 99 VLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+ YN L +C V + + K +T ++ A C+ G ++ A F
Sbjct: 682 PVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFH 741
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
++ ++GF +R ++N++ K+ + D + F
Sbjct: 742 QMVERGFEVSIRDYSAVINRLCKRNLITDAKFF 774
>gi|359496222|ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVC-----------FVRMI--RKGFVP 119
+GK G+ ++A ++F++ NC++ V+ +N+L VC F + + G VP
Sbjct: 102 YGKAGMFEHAHKLFDELPKLNCERTVVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVP 161
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
D ++ I+VNA+C G + A L E+ G P + + ++N + GS D E
Sbjct: 162 DVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIW 221
Query: 180 SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------H 228
L++ + + +V + + V E + EA L+ + G
Sbjct: 222 DLMK------KNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLM 275
Query: 229 KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K F + G ++A ++SE+ PP R Y
Sbjct: 276 KGFCNAGNLEEAKRWYSEIARNELPPVRATY 306
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 40/153 (26%)
Query: 57 PDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
P +L V P +S +I+ F + G +D+A+ V ++ M +
Sbjct: 154 PGNLGVVPDVVSYNIIVNAFCEMGSLDSALSVLDE----------------------MEK 191
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
G PD T L+NA+ +G + ++ + P VRS
Sbjct: 192 VGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSE 251
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +++++M G PD+ T NSL++ C +G L
Sbjct: 252 AVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNL 284
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 64/235 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +II+ K G+ A+++F++ MI G +PD ++
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSE----------------------MIGAGILPDVVVYS 1124
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----------------NKMIKQ 169
L++ C G+++EA EF +E+ +G + V + ++ N M+ +
Sbjct: 1125 SLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDR 1184
Query: 170 GSVPDLETFNSLIETICKSGELGLCA---DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
G PD TF LI+ +CK G++G ++ +K P + + L+ L ED
Sbjct: 1185 GFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQL-ED 1243
Query: 227 GHKLFPSLG----------------------QFDDAFCFFSEMQIKTHPPNRPVY 259
KLF SL + D+AF FF EM+ K P+ Y
Sbjct: 1244 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTY 1298
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 41/248 (16%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTI----ELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+ D+Y +L + +S +WK + LM S T +++I+ K G +
Sbjct: 1151 ISADVYTYNSL----IHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIR-----------KGFVPDKRTHTIL 127
A ++ + +L YN+L +C V + +G + ++ IL
Sbjct: 1207 GEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 1266
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGS 171
+N +C K+ EA F +E+ KG P VR+A+++ +M G
Sbjct: 1267 INGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 1326
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
L T+ L++ +CK+G L D+ SI + I E F +L + + KL
Sbjct: 1327 FLKLSTYCVLLDGLCKNGHLEEAMDLFQ---SIKKTEHKPNI-EVFSILLDGMCRAGKLE 1382
Query: 232 PSLGQFDD 239
+ QFD+
Sbjct: 1383 EAWKQFDE 1390
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 56/223 (25%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---------MIRK----GFVPDKRTHTI 126
+++A+++F++ C +N L + M RK G PD T I
Sbjct: 927 LNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNI 986
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQG 170
L++ CS + +GF P + A Q+ ++M K+G
Sbjct: 987 LIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKG 1046
Query: 171 SVPDLETFNSLIETICKSGELGLC------------ADVNTNKISIPAVSKEFMIDEAFR 218
+ D +T+ LI +CK+ + GL DV T + I A+ K+ M EA
Sbjct: 1047 LLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALD 1106
Query: 219 LLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQ 248
+ ++ G + P + G+ +A FF EM+
Sbjct: 1107 MFSEMI--GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEME 1147
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 29/168 (17%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF---NKCTAFN--CQQCVLLYN---S 104
E M+P L T + +I + G + A ++F C F CVLL +
Sbjct: 1284 EEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 1343
Query: 105 LHV-----CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
H+ F + + P+ +IL++ C +GK+ EA + E+S G P +
Sbjct: 1344 GHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAY 1403
Query: 160 KQMVN----------------KMIKQGSVPDLETFNSLIETICKSGEL 191
++N +M ++G +PD TFN +I+ + K E+
Sbjct: 1404 NILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 1451
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 32/199 (16%)
Query: 31 AERTLNRLNLTLISELSM---WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF 87
+ T + L ++L+ + S+ W + M V +++++ + + G ++ A ++
Sbjct: 532 SSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLW 591
Query: 88 NKC------------TAFNCQQCVL-LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
N+ AF C+ L + F M+RKGFVP+ + L+ +C
Sbjct: 592 NEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKV 651
Query: 135 GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETF 178
GK+ EA + ++E++ +G P + + ++ + KQG + PD+ T+
Sbjct: 652 GKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTY 711
Query: 179 NSLIETICKSGELGLCADV 197
N+LI+ CK+ ++G D+
Sbjct: 712 NTLIDGYCKAFDVGGADDL 730
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-CFVRMIRKGFVPDKRTHTILV 128
++ E K GL+ + V N C+Q + L + F+ M R G PD T+ L+
Sbjct: 660 LVREMNKRGLLPDIFTV-NMIICGLCKQGRM---KLAIETFMDMCRMGLSPDIVTYNTLI 715
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSV 172
+ +C + + A + + ++SD G+ P + A ++ ++I G V
Sbjct: 716 DGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIV 775
Query: 173 PDLETFNSLIETIC 186
P+ T+N++I +C
Sbjct: 776 PNTVTYNTMINAVC 789
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 28/152 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T+++II K G + A+E F ++ YN+L C ++M
Sbjct: 675 TVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKM 734
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G+ PD T+ I ++ +C+ K+ A L+EL G P + M+N
Sbjct: 735 SDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILD 794
Query: 165 -------KMIKQGSVPDLETFNSLIETICKSG 189
K++K VP+ T N L+ CK G
Sbjct: 795 HAMILTAKLLKMAFVPNTVTVNVLLSQFCKQG 826
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 36/211 (17%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
S+W ++ VFP ++ I GL+ +A +VF+ +YNS
Sbjct: 589 SLWNEMK-----GRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNS 643
Query: 105 LHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L F + M ++G +PD T +++ C G+M+ A E ++ G
Sbjct: 644 LIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMG 703
Query: 152 FNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA 195
+P V A ++ KM G PDL T+N I C ++
Sbjct: 704 LSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAV 763
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+ IS+ V + +CN++ D
Sbjct: 764 MILEELISVGIVPNTVTYNTMINAVCNVILD 794
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 46/216 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN--------------SLHVCFVR 111
T +L+I EF + G + + F C+ V YN +LH+ +
Sbjct: 290 TFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNL- 348
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
MI G P T +++A+C G + A+++ E+ D G +
Sbjct: 349 MIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARD 408
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKI 202
+ A + +M + VPD TFN+L+ + G+ GL D + +
Sbjct: 409 ISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDV 468
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
++ + DEA +LL NL+ G + PS+ F+
Sbjct: 469 TVAGLCWAGRYDEAMKLLENLL--GKGIPPSVVAFN 502
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 44/193 (22%)
Query: 111 RMIR----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK- 165
R++R G + D + V C +G+ EA + L+ L KG P V + ++
Sbjct: 449 RLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAY 508
Query: 166 ---------------MIKQGSVPDLETFNSLIETICKSGEL--GLCADVNTNKISIPAVS 208
M+K G P T +SL+ ++ + G L A + P +
Sbjct: 509 GNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTN 568
Query: 209 KEF--MIDEAFRL-LCNLVED------GHKLFPSL-------------GQFDDAFCFFSE 246
F ++D FR+ N+ E G +FP G DA+ FS+
Sbjct: 569 MAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSD 628
Query: 247 MQIKTHPPNRPVY 259
M K PN VY
Sbjct: 629 MLRKGFVPNNFVY 641
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 47/260 (18%)
Query: 34 TLNRLNLTLISELSMWKTIELMKP-DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKC 90
T N L L SE + + ++LM+ + L + P T +++ F K G++ +A + +
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360
Query: 91 TAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKM 137
T N + V++YN L + R M +KG P+ T+ L+ + SG
Sbjct: 361 TERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDW 420
Query: 138 REAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSL 181
R A L E+ +KG VR A +++++M + G P+ T+N++
Sbjct: 421 RSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI 480
Query: 182 IETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH--KLFPSLGQFDD 239
I+ C G + ++ T E R N+V K F +G+ D+
Sbjct: 481 IQGFCDKGNIKSAYEIRTRM-------------EKCRKRANVVTYNVFIKYFCQIGKMDE 527
Query: 240 AFCFFSEMQIKTHPPNRPVY 259
A +EM K PN Y
Sbjct: 528 ANDLLNEMLDKCLVPNGITY 547
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 43/226 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFV- 110
T + +I + G + A +V A+ V YNSL HV +
Sbjct: 193 TFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLL 252
Query: 111 -RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M+ G P T +L+N +C + A +E+ +G V + +++ + +
Sbjct: 253 KEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSE 312
Query: 170 GSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
G V P+ TF +++ CK G+ AD N I +++ +
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK---GMMADAND---WIDGMTERNV- 365
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E ++ N++ D ++ LG+ +DA M K PN Y
Sbjct: 366 -EPDVVIYNILID---VYRRLGKMEDAMAVKEAMAKKGISPNVTTY 407
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 28/170 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W I+LMK ++ V +T +++ + + GL A+ FN+ +NC+ + ++ L
Sbjct: 114 WYFIDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISI 173
Query: 109 FVR------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
R ++ F PD +T LV WC +G + EA+ E+ G P V
Sbjct: 174 LCRERRASQAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNV 233
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A + +M+ G P+ T+NSL+ K+G
Sbjct: 234 YTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGR 283
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 57/232 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRM 112
T S++I+ + G I A ++F + CQ + YNSL HV + +M
Sbjct: 235 TYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQM 294
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G PD T+ L+ C + +A +++ M K+G
Sbjct: 295 KRLGCEPDTVTYNFLIETHCKDENLEDAI-------------------KVIGLMAKKGCA 335
Query: 173 PDLETFNSLIETICKSGELGLC---------ADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
P+ TFN+L I K G++ + N ++ + K F+ ++ ++ L
Sbjct: 336 PNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKL 395
Query: 224 VE--DGHKLFPS-------------LGQFDDAFCFFSEM-QIKTHPPNRPVY 259
D +K+ P+ +G +++A+ FF EM K P+ PVY
Sbjct: 396 KTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVY 447
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 15/153 (9%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K I LM + T + + K G ++ A ++ K NC+ + YN+L F
Sbjct: 324 KVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMF 383
Query: 110 V-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
V M P+ T+ +L+ +C G A +F +E+ D+ P
Sbjct: 384 VASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPS 443
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
MV + +++ L+ L+E + G
Sbjct: 444 LPVYDMVLQQLRKAG--QLKKHEELVEKMVDRG 474
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 31/162 (19%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------- 105
+V P TL S++++ + G++ A VF T + + YN+L
Sbjct: 438 NVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEA 497
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------- 158
F M+ KG PD ++ IL+N +C+S +M +A+ L ++S K P +
Sbjct: 498 RKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKG 557
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+++ KM G +P L T++ L+ +CK G L
Sbjct: 558 LCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHL 599
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 76/282 (26%)
Query: 25 VRHDIYAERTL----NRLNLTLISELSMW-KTIEL-MKPDSLSVFPQTLSLIIEEFGKHG 78
V H +Y+ L RLN + +S+W K +L ++PD + T + +I G
Sbjct: 124 VTHTVYSLNILINCLCRLNHVDFA-VSVWGKMFKLGIQPDVI-----TFTTLINGVCNEG 177
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
I AVE++N+ M+R G PD ++ L+N C+SG
Sbjct: 178 KIKVAVELYNE----------------------MVRSGHEPDVISYNTLINGLCNSGNTN 215
Query: 139 EAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLI 182
A +++ G P V A +++M+ +G PD T+NS++
Sbjct: 216 MAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIV 275
Query: 183 ETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-- 227
+C G+L G DV T I I ++ K+ ++++A L +V+ G
Sbjct: 276 HGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIP 335
Query: 228 ----------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
H L LGQ ++A F +M+ K P+ Y
Sbjct: 336 PDVVTYTTILHGLC-YLGQLNEAIRLFKKMEQKGCKPDVVAY 376
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 64/236 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + II+ K L+++A++ ++ + YNS+ +C F RM
Sbjct: 235 TYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRM 294
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ G PD T+ I++++ + +A +FL E+ D+G P V
Sbjct: 295 EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQL 354
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A ++ KM ++G PD+ +N++I+++C K+ ++++A
Sbjct: 355 NEAIRLFKKMEQKGCKPDVVAYNTIIDSLC----------------------KDRLVNDA 392
Query: 217 FRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
L +V+ G H F +LGQ D+A F EM + PN ++
Sbjct: 393 MEFLSEMVDRGIPPNAVTYSTILHG-FCNLGQLDEATQLFKEMVGRNVMPNTLTFS 447
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 50/197 (25%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK--- 165
F M+ + +P+ T +ILV+ C G + EA+ + +++KG P + + ++N
Sbjct: 431 FKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCL 490
Query: 166 -------------MIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVS 208
M+ +G PDL ++N LI C S + L ++ K++ V+
Sbjct: 491 RCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVT 550
Query: 209 KEFMI------------DEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCF 243
++ E F+ +C+ + P+L G D+A
Sbjct: 551 YNTIMKGLCYVGRLLDAQELFKKMCS-----SGMLPTLMTYSILLNGLCKHGHLDEALKL 605
Query: 244 FSEMQIKTHPPNRPVYA 260
F M+ K P+ +Y
Sbjct: 606 FKSMKEKKLEPDIILYT 622
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 77/192 (40%), Gaps = 42/192 (21%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTH 124
G ++ A +F + C+ V+ YN + + M+ +G PD T+
Sbjct: 282 GQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTY 341
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIK 168
T +++ C G++ EA +++ KG P V A + +++M+
Sbjct: 342 TTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVD 401
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G P+ T+++++ C G+L + + T I + + +E M+ E
Sbjct: 402 RGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSE 461
Query: 216 AFRLLCNLVEDG 227
A + + E G
Sbjct: 462 ARWVFETMTEKG 473
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 22/105 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S+++ KHG +D A+++F M K PD +T
Sbjct: 585 TYSILLNGLCKHGHLDEALKLFKS----------------------MKEKKLEPDIILYT 622
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
IL+ GK+ A+ +LS G PP R+ M+ ++K+G
Sbjct: 623 ILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEG 667
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 38/154 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M+ L + T + +I+ F ++G +D+A+ + Q V+ YN
Sbjct: 321 MRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYN----------- 369
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RS 158
+L+N +C G+M EA+E + E+ KG P V S
Sbjct: 370 -----------VLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDS 418
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
A ++ KM+K+G VPD T++SLI +C+ LG
Sbjct: 419 AFELNRKMLKKGVVPDAITYSSLIRGLCEERRLG 452
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 29/150 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIR 114
+++I + K G +D A E+ ++ A + V+ Y+++ + + M++
Sbjct: 369 NVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLK 428
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KG VPD T++ L+ C ++ +A E +++ G P V+
Sbjct: 429 KGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQK 488
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A + ++MIK+G +PD+ T++ LI+ + KS
Sbjct: 489 ALSLHDEMIKKGVLPDVVTYSVLIDGLSKS 518
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 49/179 (27%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R+G PD ++ LV+ +C +G + EA E++ KG
Sbjct: 248 FDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV---------------- 291
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
VPD+ TF SLI +C++G L GL + T I + +D+
Sbjct: 292 ---VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDD 348
Query: 216 AF-------------RLLC-NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
A ++C N++ +G + LG+ D+A EM+ K P+ Y+
Sbjct: 349 ALLAMKEMRECRIQPSVVCYNVLING---YCKLGRMDEARELIHEMEAKGMKPDVVTYS 404
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 40/177 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M G P+ T+ LV A+C +G++ A+ + + + G P +
Sbjct: 181 MRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGR 240
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
A++M ++M ++G PD ++N+L+ CK+G L G+ DV T
Sbjct: 241 MEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTS 300
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQ 248
I A+ + ++ A L+ + E G ++ F +L G DDA EM+
Sbjct: 301 LIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMR 357
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL-QELSDKGFNP---------------- 154
M+R G P+ T+ ILV A C+ G+ EA + ++ G P
Sbjct: 145 MLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAG 204
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V +A+++V M + G P L TFN+++ +CK+G +
Sbjct: 205 EVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRM 241
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 53/266 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S+WK E M+ + S T S++I+ K G ++ A++VF + C+ + Y S+
Sbjct: 142 SVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMI 201
Query: 106 -------HV-----CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
HV F M +G V + + L++ SG+ A + +E+ KG
Sbjct: 202 DGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQ 261
Query: 154 PP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS--------- 188
P A+++ + G D+ +N LI+T+CKS
Sbjct: 262 PDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEI 321
Query: 189 -GEL---GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL-- 234
GEL GL DV T + + K I +AF LL ++ G + L L
Sbjct: 322 FGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRK 381
Query: 235 -GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ ++A EMQ + P+ Y
Sbjct: 382 SGRVEEAGQLLLEMQSLGYEPDVVTY 407
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 99/273 (36%), Gaps = 87/273 (31%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ GK G +D A +F + T+ ++YNSL F M
Sbjct: 196 TYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREM 255
Query: 113 IRKGFVPDKRTHT-----------------------------------ILVNAWCSSGKM 137
+ KG PD T T +L++ C S ++
Sbjct: 256 LSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRL 315
Query: 138 REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSL 181
EA E EL + G P V + +++ + K G + PD+ +N+L
Sbjct: 316 DEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTL 375
Query: 182 IETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG- 227
I+ + KSG LG DV T I K I++A RL + G
Sbjct: 376 IDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF 435
Query: 228 ------HKLFPSL---GQFDDAFCFFSEMQIKT 251
+ + L G+ D+A+ F+ M+ +T
Sbjct: 436 ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQET 468
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 87/222 (39%), Gaps = 34/222 (15%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P+ + + GL++ +VE + C YNSL FV+
Sbjct: 54 PRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYR 113
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M + G PD T +L+NA+ + ++ + +E+ ++ +P V + +++ + K G
Sbjct: 114 VMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCG 173
Query: 171 SVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-- 227
V L+ F + C+ ++ T I + K +D+AF L + +G
Sbjct: 174 GVEKALKVFLDMKSRGCRP-------NIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLV 226
Query: 228 ----------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
H L S G+ D A F EM K P+ +
Sbjct: 227 ATRVVYNSLIHGLGRS-GRADAAAKLFREMLSKGLQPDHVTF 267
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 44/194 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KG PD T+ LV+ +CS +M EAQ+ + KG P VRS ++N K
Sbjct: 173 FETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCK 232
Query: 169 QGSV----------------PDLETFNSLIETICKSGE-------------LGLCADVNT 199
G + PD+ T+++L+ C+ G GL ++ T
Sbjct: 233 SGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLIT 292
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSE 246
I + + K +DEAF LL + E K+ P++ G+ + A FS
Sbjct: 293 YSIVLDGLCKHGHLDEAFELLKAMQES--KIEPNIFIYTILIEGMCTFGKLEAARELFSN 350
Query: 247 MQIKTHPPNRPVYA 260
+ +K P Y
Sbjct: 351 LFVKGIQPTVVTYT 364
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 40/166 (24%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
+ISE W E M L T + +++ + +D A ++FN
Sbjct: 165 MISE--AWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNI------------ 210
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M RKG P+ R++ IL+N C SG++ EA+ L E+S K P +
Sbjct: 211 ----------MDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYST 260
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A++++ +M G +P+L T++ +++ +CK G L
Sbjct: 261 LMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHL 306
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M++ G PD T++ ++N C G A + L+++ +KG P V + +++
Sbjct: 33 FDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCK 92
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSGELGLCA---------DVNTNKIS 203
+M+K+G PD+ T++S++ C G + +V NK++
Sbjct: 93 DRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVT 152
Query: 204 ----IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEM 247
I + K+ MI EA+ + + E G L P + ++ D +C S+M
Sbjct: 153 FTILIDGLCKKRMISEAWLVFETMTEKG--LEPDVYTYNALVDGYCSRSQM 201
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 44/175 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S++++ KHG +D A E+ M P+ +T
Sbjct: 292 TYSIVLDGLCKHGHLDEAFELLKA----------------------MQESKIEPNIFIYT 329
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK----------------Q 169
IL+ C+ GK+ A+E L KG P V + M++ ++K
Sbjct: 330 ILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVN 389
Query: 170 GSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA-FRLLCNL 223
G +P+ T+N +I+ ++G+ N ++ V K F D + FR+L +L
Sbjct: 390 GCLPNSCTYNVIIQGFLRNGD-----TPNAVRLIEEMVGKGFSADSSTFRMLSDL 439
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 21/162 (12%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M + G P T L++ CS K+ +A + E+ G P V + ++N + K G+
Sbjct: 1 MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60
Query: 172 VP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--- 227
L+ + E CK +V I ++ K+ ++ EA +V++G
Sbjct: 61 TTMALQLLKKMEEKGCK-------PNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPP 113
Query: 228 ---------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
H F +LG+ ++A F +M + PN+ +
Sbjct: 114 DVFTYSSILHG-FCNLGRVNEATSLFKQMVERNVIPNKVTFT 154
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M+++G P+ T+ L+N C SG + AQ+ +L KG P V
Sbjct: 770 MLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGN 829
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
R A + NKM+K+G P L T+++LI CK G++G
Sbjct: 830 TREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMG 866
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 20/190 (10%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNC----QQCV 99
S L +W + + D P +I++ + + G+I NA+ VF+ C + C
Sbjct: 129 SSLVVWNELVRVFED-FKFSPTVFDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCN 187
Query: 100 LLYNSLH---------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
L +SL + + + R G VPD T +I+VNA+C G + A +F++E+
Sbjct: 188 RLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYL 247
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
GF V + +++ + S+ D+E +++ + GE G+ + T + I ++
Sbjct: 248 GFELNVVTYNSLIDGCV---SIGDMERAEMVLKLM---GERGILRNKVTLTLLIKGYCRQ 301
Query: 211 FMIDEAFRLL 220
++EA ++L
Sbjct: 302 CKLEEAEKVL 311
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQ 161
+P+ + I + C SGK+ +A++ L +GF+P V A
Sbjct: 706 LPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFS 765
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
+ ++M+K+G P++ T+N+LI +CKSG L GL +V + I I
Sbjct: 766 LRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYC 825
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDD---AFCFFSEMQIKTH 252
K EA L ++++G + PSL + FC +M T+
Sbjct: 826 KNGNTREALDLRNKMLKEG--ISPSLITYSALIYGFCKQGDMGKATN 870
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 104/281 (37%), Gaps = 93/281 (33%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
++P+S S S +++ F + GL+ A+ V+N+ Q V+ +NSL R
Sbjct: 390 LEPESYSY-----STLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGA 444
Query: 112 ----------MIRKGFVPDKRTHTIL---------------------------------- 127
M+++G PD+ ++ L
Sbjct: 445 FEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNT 504
Query: 128 -VNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQG 170
+N +C KM EA+E + + GF P V A ++ KM K+
Sbjct: 505 MINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEA 564
Query: 171 SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
+P +E +NSLI + KS + GL +V T I E +D+AF
Sbjct: 565 ILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAF 624
Query: 218 RLLCNLVEDG--------HKLFPS---LGQFDDAFCFFSEM 247
+++E G K+ S LG+ D+A +M
Sbjct: 625 TAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKM 665
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 30/159 (18%)
Query: 29 IYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN 88
I AE T NR+ EL +PD + T +I+ + K G ++ A +V
Sbjct: 516 IEAEETFNRM-----KELGF-------EPDGV-----TYRTLIDGYCKLGNVEEAFKVKE 558
Query: 89 KCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSG 135
K + LYNSL + M KG P+ T+ L+ WC G
Sbjct: 559 KMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEG 618
Query: 136 KMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
++ +A ++ +KGF P V ++V+ + + G + +
Sbjct: 619 RLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDE 657
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 31/208 (14%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR-KGFVPDKRTHTIL 127
++++ G+ G++ N V + + C+QC L M R +G V D+ + +L
Sbjct: 274 MVLKLMGERGILRNKVTLTLLIKGY-CRQCKL--EEAEKVLREMERSEGMVLDEYAYGVL 330
Query: 128 VNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVNKMIKQGS 171
++ +C KM +A E+ + G N V A++++ +M+
Sbjct: 331 IDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDL 390
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
P+ ++++L++ C+ G + V + + S + + LC
Sbjct: 391 EPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCR--------- 441
Query: 232 PSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+G F+DA + M + P+ Y
Sbjct: 442 --VGAFEDALHVWHLMLKRGVTPDEVSY 467
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 75/188 (39%), Gaps = 27/188 (14%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
MKPDS+ L+ +I F + G +D A+++F K + C+ YN+L F R
Sbjct: 88 MKPDSI-----LLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGR 142
Query: 115 --------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
+ P+ RT+ IL+ AWC+ K+ EA L ++ G P V +
Sbjct: 143 PYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYN 202
Query: 161 QMVNKMIKQGSVPDLETFN-SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
M + G E + I K E T I I KE + EA R
Sbjct: 203 TMARAYAQNGETERAERLILKMPYNIVKPNE-------RTCGIIISGYCKEGNMPEALRF 255
Query: 220 LCNLVEDG 227
L + E G
Sbjct: 256 LYRMKELG 263
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 41/168 (24%)
Query: 40 LTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV 99
LTL+ E + KPD + T S I+ + GL++N E+FN + +
Sbjct: 291 LTLMEEFGI-------KPDVV-----TFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDI 338
Query: 100 LLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
Y+ L +VR M + G P+ T +++ WC++GKM A ++
Sbjct: 339 HAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEK 398
Query: 147 LSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETF 178
+ + G +P +++ A++++ M ++G VP++ T
Sbjct: 399 MHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTM 446
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 24/194 (12%)
Query: 50 KTIELMKPDSLSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
K +E+M D +V P +T +++I+ + ++ A V +K A Q V+ YN++
Sbjct: 148 KLLEMMGQDE-NVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR 206
Query: 108 CFV---------RMIRKG----FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+ R+I K P++RT I+++ +C G M EA FL + + G +P
Sbjct: 207 AYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDP 266
Query: 155 -PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
PV + N +IK G + +T N + E + E G+ DV T + A S ++
Sbjct: 267 NPV-----VFNSLIK-GYLDTTDT-NGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLM 319
Query: 214 DEAFRLLCNLVEDG 227
+ + ++V+ G
Sbjct: 320 ENCEEIFNDMVKAG 333
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 53/213 (24%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+T +II + K G + A+ + +++NSL ++
Sbjct: 234 RTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTL 293
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M G PD T + ++NAW S+G M +E ++ G P +
Sbjct: 294 MEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQ 353
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
R A+ ++ M K G P++ F ++I C +G++ D
Sbjct: 354 PRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKM----------------------DR 391
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
AFRL + E G P+L ++ + E +
Sbjct: 392 AFRLCEKMHEMGTS--PNLKTYETLIWGYGEAK 422
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 106/248 (42%), Gaps = 53/248 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S +I F G +++A+++FNK N + V +N L F + M
Sbjct: 262 TYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+++G P+ T+ L++ +C ++ +A+ ++ G NP ++S M+N
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+M ++ +PD+ T++SLI+ + KSG + G+ + T
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSI 441
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTH 252
+ A+ K +D+A LL L + G + L L G+ +DA F + +K H
Sbjct: 442 LDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGH 501
Query: 253 PPNRPVYA 260
N Y
Sbjct: 502 NLNVDTYT 509
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M RK +PD T++ L++ SG++ A + + ++ D+G P +R+
Sbjct: 388 FKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCK 447
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
A ++ K+ +G P++ T++ LI+ +C+SG+L G +V+T
Sbjct: 448 IHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDT 507
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I E + +EA LL + ++G
Sbjct: 508 YTIMIQGFCVEGLFNEALALLSKMEDNG 535
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
L+ V ++N C+ V L N F MI KG PD T++ L++ +C GK+
Sbjct: 220 LVQPNVVMYNTIIDSMCK--VKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLN 277
Query: 139 EAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLI 182
+A + ++ + P V + K + + M+KQG P+ T+NSL+
Sbjct: 278 DAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
+ C E+ + N ++ V+ + +++ ++ N F + +FD+A
Sbjct: 338 DGYCLVKEVNKAKSI-FNTMAQGGVNPDI---QSYSIMIN-------GFCKIKKFDEAMN 386
Query: 243 FFSEMQIKTHPPNRPVYA 260
F EM K P+ Y+
Sbjct: 387 LFKEMHRKNIIPDVVTYS 404
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S +I+ K G I A+++ ++ + YNS+ +C ++
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG P+ T++IL+ C SGK+ +A++ + L KG N V +
Sbjct: 462 KDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLF 521
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++KM G +PD +T+ +I ++ K E
Sbjct: 522 NEALALLSKMEDNGCIPDAKTYEIIILSLFKKDE 555
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 43/171 (25%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F ++++ G+VPD T T L+ C G++++A F ++ GF+
Sbjct: 143 FAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFH--------------- 187
Query: 169 QGSVPDLETFNSLIETICKSGE----LGLCADVNTNKIS---------IPAVSKEFMIDE 215
D ++ +LI +CK GE L L V+ N + I ++ K +++E
Sbjct: 188 ----FDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNE 243
Query: 216 AFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
AF L ++ G F LG+ +DA F++M ++ P+
Sbjct: 244 AFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPD 294
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 53/258 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR- 111
M D+++ T S++I+ F K G + A V N + V+ YNSL C V+
Sbjct: 259 MISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQ 318
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
M ++G PD +++I++N +C + EA + +E+ K P V +
Sbjct: 319 VNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNS 378
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELG 192
A ++V++M +G ++ T+NS+++ ICK+ E G
Sbjct: 379 LVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKG 438
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAF 241
+ D+ T + I + K +D+A ++ +L+ G+ + SL G FD+
Sbjct: 439 IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGL 498
Query: 242 CFFSEMQIKTHPPNRPVY 259
S+M+ PN Y
Sbjct: 499 AMLSKMKDNGCIPNAITY 516
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 48/203 (23%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------ 154
L N + M+ K PD T++ L++ +C GK++ A + + NP
Sbjct: 213 LVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFS 272
Query: 155 ----------PVRSAKQMVNKMIKQGSVPDLETFNSLIETIC--------KS-----GEL 191
VR AK ++ M+K+ D+ T+NSL++ C KS +
Sbjct: 273 ILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQR 332
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH--KLFPSLGQFD---DAFC---- 242
G+ DV + I I K M+DEA +L E+ H ++FP++ ++ D C
Sbjct: 333 GVTPDVWSYSIMINGFCKIKMVDEAMKLF----EEMHCKQIFPNVVTYNSLVDGLCKSGR 388
Query: 243 ------FFSEMQIKTHPPNRPVY 259
EM + P N Y
Sbjct: 389 TSCALELVDEMHDRGQPSNIITY 411
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-- 164
V ++ KG PD T+T+L+N C G++ +AQ+ ++L KG++P + + ++N
Sbjct: 429 VLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGF 488
Query: 165 --------------KMIKQGSVPDLETFNSLIETICKSGE 190
KM G +P+ T+ LI ++ + E
Sbjct: 489 CNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDE 528
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 71/169 (42%), Gaps = 43/169 (25%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F ++++KG+ PD T TIL+ C G++ +A F ++ +GF S ++N + +
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175
Query: 169 QGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
G P++ ++++I+++C K+ +
Sbjct: 176 VGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMC----------------------KDKL 213
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQIKTHPPNRPV 258
+++AF L C +V ++ P + + FC +++ NR +
Sbjct: 214 VNDAFDLYCEMVS--KRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMI 260
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN----- 103
W I+LMK ++ + +T +++I + + GL AV FN+ + C + ++
Sbjct: 171 WHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISN 230
Query: 104 -------SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
S F ++ F PD +T LV WC +G++ EA++ +++ G P V
Sbjct: 231 LSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNV 290
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A + M+ G P+ TFN+L+ K+G
Sbjct: 291 YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAG 339
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 48/215 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRM 112
T S++I+ + G I A +VF C + +N+L HV + +M
Sbjct: 292 TYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQM 351
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNP---------PV 156
+ G PD T+ L+ C + A + L E++ FN V
Sbjct: 352 KKLGCEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDV 411
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFM 212
A +M +KM++ P+ T+N L+ S L + D++ ++ P V+
Sbjct: 412 NGAHRMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVE-PNVN---- 466
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+RLL +F +G +++A+ F EM
Sbjct: 467 ---TYRLLVT-------MFCGMGHWNNAYKLFKEM 491
>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 41 TLISELS-MWKTIEL------MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC--- 90
+LI LS +W+ E M + L + +L+++ + + G + A ++N+
Sbjct: 399 SLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGR 458
Query: 91 ---------TAF-NCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140
+AF N V L + + F++M +KGF+P+ + L+ +C+SG+++EA
Sbjct: 459 GIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEA 518
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIET 184
+E++ KG P + + ++N + K+G +PD+ T+N+LI+
Sbjct: 519 LMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDG 578
Query: 185 ICKS 188
CK+
Sbjct: 579 YCKA 582
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 28/152 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T ++II K G + +A +VF ++ YN+L + + M
Sbjct: 536 TTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKM 595
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G+ PD T+ I ++ C+ KM A L+EL G P + ++N
Sbjct: 596 YATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVCTDVLE 655
Query: 165 -------KMIKQGSVPDLETFNSLIETICKSG 189
K++K VP++ T N L+ CK G
Sbjct: 656 RAMIVTAKLLKMAFVPNVVTANLLLSHFCKQG 687
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 29/185 (15%)
Query: 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94
L +L L + S+WK + M + + +I F + G + + F
Sbjct: 120 LFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFK 179
Query: 95 CQQCVLLYNSL------------HVCFVR-MIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
CQ V YN L + ++R MI G P T ++NA+C+ G M EA+
Sbjct: 180 CQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEAR 239
Query: 142 EFLQELSDKGFNPPVRSAKQMVNKMIK----------------QGSVPDLETFNSLIETI 185
+ + G P V ++N +K + PD TFN L+
Sbjct: 240 NLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGH 299
Query: 186 CKSGE 190
+ G
Sbjct: 300 YRYGR 304
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
PD + IL+NA+C+ G+ +A +++ + D G P + + A+ +
Sbjct: 182 PDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNL 241
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELG 192
+ M + G +P++ +N+L+ K+ ++G
Sbjct: 242 FDGMKEAGHIPNVVCYNTLMNGYVKARDIG 271
>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 623
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 45/205 (21%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W+ + M + T +++ F + G +D + + + ++ YN+L C
Sbjct: 234 WQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISC 293
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+ R M R+ +PD ++T L+N C GK+REA
Sbjct: 294 YCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAH-------------- 339
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
Q+ ++MI +G PD+ +FN+LI CK G++ G+C D T ++
Sbjct: 340 -----QLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQV 394
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I KE I A L+ L G
Sbjct: 395 LIEGYRKEARIVSALNLVVELERFG 419
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 64/191 (33%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I + + G +D+A ++ N ++ Y +L H F RM
Sbjct: 286 TYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRM 345
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------------ 154
I +G PD + L+ +C GKMRE++ L E+ G P
Sbjct: 346 IHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARI 405
Query: 155 ---------------PVRS------------------AKQMVNKMIKQGSVPDLETFNSL 181
P+ + AK ++ ++ ++G VP +E +N L
Sbjct: 406 VSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKL 465
Query: 182 IETICKSGELG 192
IE++CKS +
Sbjct: 466 IESLCKSDSIA 476
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T ++IE + K I +A+ + + F +Y+ L V R+
Sbjct: 391 TCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRI 450
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------RS 158
++G+VP + L+ + C S + +A E+ + P RS
Sbjct: 451 SQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRS 510
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
A+ ++ +M++ G +PD + +L+ CK ++G
Sbjct: 511 MEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIG 546
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL++ A+EV + + C L YN L F + M
Sbjct: 99 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 158
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G PD ++ L+ A C SG++ A E L +L DKG P
Sbjct: 159 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 218
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A +++N+M+ +G PD+ T++++ +C+
Sbjct: 219 KEALELLNEMVSKGLQPDIITYSTIAAGLCR 249
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 59/250 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T ++++ + G +D+A+E ++ C+ + YN + +C M
Sbjct: 29 TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM 88
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
+KG P+ T +L++ C G + A E L+++ G +NP + +
Sbjct: 89 GQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKM 148
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL------------CADV--NTNKI 202
A ++ M+ +G PD+ ++N+L+ +C+SGE+ + CA V + N +
Sbjct: 149 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 208
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQI 249
I ++K EA LL +V G L P + + +DA F ++Q
Sbjct: 209 -IDGLTKAGKTKEALELLNEMVSKG--LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQD 265
Query: 250 KTHPPNRPVY 259
PN +Y
Sbjct: 266 MGIRPNTVLY 275
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M KG PD T+ ++VN C G++ +A EFL+ L G P S
Sbjct: 18 MRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER 77
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A++++ +M ++G P++ TFN LI +C+ G
Sbjct: 78 WEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKG 111
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVC---- 108
++PD + T S I + I++A+ F K + +LYN+ L +C
Sbjct: 233 LQPDII-----TYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 287
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F MI G +P++ T+TIL+ G ++EA++ L EL +G VR K
Sbjct: 288 THSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV---VR--KS 342
Query: 162 MVNK 165
++NK
Sbjct: 343 LINK 346
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 80/213 (37%), Gaps = 47/213 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
P+SLS P ++ F K +D A+ + + C ++ YN+L R
Sbjct: 130 PNSLSYNP-----LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 184
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
+ KG P ++ +++ +GK +EA E L E+ KG P
Sbjct: 185 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 244
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
+ A + K+ G P+ +N++I +CK E G
Sbjct: 245 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 304
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ +T I I ++ E +I EA LL L G
Sbjct: 305 PNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 59 SLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S +P +S ++ + G +D AVE+ ++ C ++ YN++ +
Sbjct: 160 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTK 219
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------- 154
M+ KG PD T++ + C ++ +A ++ D G P
Sbjct: 220 EALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAII 279
Query: 155 -------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAV 207
SA + MI G +P+ T+ LIE + G + D+ S V
Sbjct: 280 LGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 339
Query: 208 SKEFMIDEAFRLL 220
K + A RLL
Sbjct: 340 RKSLINKGAIRLL 352
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 42/201 (20%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 83 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 142
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + +
Sbjct: 143 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYE 202
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
+ KM+ G L TFN L+ +CK G++ G+ ++ T I +
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLC 262
Query: 209 KEFMIDEAFRLLCNLVEDGHK 229
++ +D A R++ L++ G K
Sbjct: 263 QKGELDAAVRMVGRLIDQGPK 283
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 35/157 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
MI KG+ PD T IL++ + + KM A E L + D G +P V + ++N
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSK 511
Query: 166 ----------MIKQGSVPDLETFNSLIETICK----SGELGLCADVNTNKISIPAVSKEF 211
M+++G P+L TFN L+E++C+ LGL ++ ++ AV+
Sbjct: 512 YEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGT 571
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
+ID F G D A+ F +M+
Sbjct: 572 LIDG---------------FCKNGDLDGAYTLFRKME 593
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVC------------FVRMIRKG 116
++ F + D E+F K A C+ +N L HV ++I++G
Sbjct: 187 VVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRG 246
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
+P+ T+ + C G++ A + L D+G P V + A+
Sbjct: 247 VLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAE 306
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ K++ +G PD T+N+LI CK G + L + N + V EF L
Sbjct: 307 VYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGL 366
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C H+ G+ + A F+E K PN +Y
Sbjct: 367 C------HE-----GETNRALALFNEALGKGIKPNVILY 394
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
V + GFVPD+ T+ L++ C G+ A E KG P V
Sbjct: 344 LVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSN 403
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNT 199
A Q+ ++M ++G +P+++TFN L+ +CK G G D+ T
Sbjct: 404 QGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFT 463
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I S + ++ A +L ++++G
Sbjct: 464 FNILIHGYSTQLKMENALEILDVMMDNG 491
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL-LYN------- 103
+E MK S++ T +I+ F K+G +D A +F K C YN
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFT 613
Query: 104 -SLHVC-----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-- 155
L+V F M+ + PD T+ ++V+ +C +G + +FL E+ + GF P
Sbjct: 614 EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLT 673
Query: 156 --------------VRSAKQMVNKMIKQGSVPD 174
V A ++++M+++G VP+
Sbjct: 674 TLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 34/148 (22%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
S FP T +++I + ++NA+E+ + V YNSL +C
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYE 513
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
+ M+ KG P+ T IL+ + C K+ +A L+E+ +K N
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVN---------- 563
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL 191
PD TF +LI+ CK+G+L
Sbjct: 564 ---------PDAVTFGTLIDGFCKNGDL 582
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 31/162 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +G VPD T+ L++ C S +M EA++ L+ + + P + +
Sbjct: 199 MSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGC 258
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------GLCA-DVNTNKI 202
A Q++ +MI+ G+ PD+ TFNSLI C+ ++ GLCA ++ T +
Sbjct: 259 TGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNV 318
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFF 244
I + +EA LL + DG + P + ++ F
Sbjct: 319 LISGLCDAGRANEACELLSEM--DGRGILPDIITYNSLIGIF 358
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-----FNPPVRS----- 158
M +G PD TH+ +V A C++G + A ++ +E + FN V
Sbjct: 128 LAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLCKAN 187
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A+QM+ +M ++G VPD+ T+NSLI+ +CKS
Sbjct: 188 QLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKS 221
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRM 112
T + +I F + ID A EV + C ++ YN L C M
Sbjct: 280 TFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEM 339
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+G +PD T+ L+ +C + ++ +A + + ++G P S
Sbjct: 340 DGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERF 399
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A +++ M G++P+L TFNSL+E +C S L G +T ++
Sbjct: 400 DEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVL 459
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
+ + K +D+A +L +V +G
Sbjct: 460 VTGLCKAGRVDDAKEVLVMMVSEG 483
>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
Length = 332
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 57/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ S +I F K G +D +N+ V+ YNS+ + M
Sbjct: 14 SYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 73
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
++ G +PD T+ +V+ +CSSG+ +EA FL+++ G P V +
Sbjct: 74 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 133
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKIS--------- 203
A+++ + M K+G PD+ T+ +L++ G L GL + N I
Sbjct: 134 TEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 193
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
+ A +K+ ++EA + + + G L P+ G+ +DA +F +M +
Sbjct: 194 VCAYAKQEKVEEAMLVFSKMRQQG--LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDE 251
Query: 251 THPPNRPVY 259
P+ VY
Sbjct: 252 GLRPDSIVY 260
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 29/161 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
M+ D + T + +++ K+G A ++F+ T + + Y +L
Sbjct: 108 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGA 167
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
H M+R G P+ +ILV A+ K+ EA ++ +G NP
Sbjct: 168 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 227
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
V A +MI +G PD +NSLI ++C
Sbjct: 228 VIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 268
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 54/199 (27%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+T +++I+ GLID A +F++ MI +G P+ T+
Sbjct: 302 RTYTVLIKALCDRGLIDKAFNLFDE----------------------MIARGCKPNVHTY 339
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------ 172
T+L++ C GK+ EA +++ G P V + ++N K G V
Sbjct: 340 TVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEK 399
Query: 173 ----PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
P++ TFN L+E +C+ G+ + L + N +S VS +ID L
Sbjct: 400 RACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLID-------GLC 452
Query: 225 EDGH-----KLFPSLGQFD 238
+GH KL S+ FD
Sbjct: 453 REGHMNVAYKLLTSMNSFD 471
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
+M KG P RT+T+L+ A C G + +A E+ +G P V +
Sbjct: 291 QMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDG 350
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A + KM+K G P + T+N+LI CK G +
Sbjct: 351 KIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRV 387
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 101 LYNSLHVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
L ++L V F M R+G P+ +++IL++ C G++ EA ++ +KG P R+
Sbjct: 246 LRDALKV-FDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTY 304
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++ + +G + + FN E I + G +V+T + I + ++ I+EA +
Sbjct: 305 TVLIKALCDRGLID--KAFNLFDEMIAR----GCKPNVHTYTVLIDGLCRDGKIEEANGV 358
Query: 220 LCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPN 255
+V+DG +FPS+ G+ AF + M+ + PN
Sbjct: 359 CRKMVKDG--IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPN 405
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P +L++I++ K + + + K V+ Y +L +R
Sbjct: 546 PHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLE 605
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M G +P+ +TI++N C G++ EA++ L + D G +P + MV + G
Sbjct: 606 LMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNG 665
Query: 171 SVPD-LETFNSLIE 183
+ LET +++E
Sbjct: 666 KLDRALETVRAMVE 679
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 32/191 (16%)
Query: 33 RTLNRLNLTLISELSMWKTIELMK---PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK 89
RT N L L +K + L+K + LS + +++I+ + G ++ A ++
Sbjct: 407 RTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTS 466
Query: 90 CTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGK 136
+F+ + L + ++ F + M+RKG D+ T T L++ C+ GK
Sbjct: 467 MNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGK 526
Query: 137 MREAQEFLQELSD-KGFNPP---------------VRSAKQMVNKMIKQGSVPDLETFNS 180
R+A L+ L + P ++ M+ K+ K G VP + T+ +
Sbjct: 527 TRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTT 586
Query: 181 LIETICKSGEL 191
L++ + +SG++
Sbjct: 587 LVDGLIRSGDI 597
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 30/154 (19%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------------- 152
+V + RM GFV + +VNA C +G A+ F+ ++ GF
Sbjct: 180 YVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLG 239
Query: 153 ---NPPVRSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGEL-------------GLCA 195
+R A ++ + M ++G+ P+ +++ LI +C+ G L G
Sbjct: 240 FCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQP 299
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
T + I A+ +ID+AF L ++ G K
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIARGCK 333
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 15/137 (10%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV------ 110
+FP T + +I + K G + A E+ C+ V +N L +C V
Sbjct: 366 GIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKA 425
Query: 111 -----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
RM+ G PD ++ +L++ C G M A + L ++ P + ++N
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINA 485
Query: 166 MIKQGSVPDLETFNSLI 182
KQG F L+
Sbjct: 486 FCKQGKADVASAFLGLM 502
>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
Length = 854
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 108/294 (36%), Gaps = 97/294 (32%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
E+++PD+ S S++I+ G +D A+ +F C+Q VLLYN+L
Sbjct: 451 EMVRPDTTS-----FSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNS 505
Query: 106 ------HVCFVRMIRKGFVPDKRTH----------------------------------- 124
++ M GF P + TH
Sbjct: 506 NRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHY 565
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---------------- 168
T+LV C + EA FL E+ +GF P + + ++ +K
Sbjct: 566 TLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICA 625
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G PD+ +N+LI CK + GL V T + I K ID+
Sbjct: 626 RGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQ 685
Query: 216 AFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNR 256
AF L +V G + P++ G+ DDA ++EM+ K PNR
Sbjct: 686 AFHCLSRMV--GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNR 737
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIR 114
S I+ F K +D A+E+F A V+ YN+L H M+
Sbjct: 601 SAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVA 660
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----------- 163
KG VP T+ +L++ WC +G + +A L + K P V + ++
Sbjct: 661 KGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDD 720
Query: 164 -----NKMIKQGSVPDLETFNSLIETICKSG 189
N+M +G P+ +F +LI +CK G
Sbjct: 721 AIHLWNEMRGKGCSPNRISFIALIHGLCKCG 751
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ-----CVLLYNSLHVC--------FVR 111
LS+++ F K G +D A E+ + + CVL++ + F +
Sbjct: 269 HVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKK 328
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
M + GF PD + L+ C+ ++ +A L E+ + G +P + Q+++K+I
Sbjct: 329 MQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDI----QILSKLI 380
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 71/225 (31%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCT----------AFNCQ-QCVLLYNSLHVCFVR- 111
P L I G GL++ A +F++ +FNC + + S+ + +R
Sbjct: 163 PGALGFFIRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRL 222
Query: 112 --MIRKGFVPDKRTHTILVNAWCSS----------------------------------G 135
M G+ PDK T T ++ A+C+S G
Sbjct: 223 KEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCG 282
Query: 136 KMREAQEFLQELSDKGF----------------NPPVRSAKQMVNKMIKQGSVPDLETFN 179
++ +A E ++ + D G V A Q+ KM K G PD+ ++
Sbjct: 283 EVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYD 342
Query: 180 SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+LI +C E+ + + + KE ID ++L L+
Sbjct: 343 ALIGGLCAKKEI-------EKALHLLSEMKELGIDPDIQILSKLI 380
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 34/165 (20%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
KP+++S S+II+ K G D A E+F + A V+ Y SL F R
Sbjct: 636 KPNAISY-----SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 690
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----------- 151
M+ G PD T ++L++ C GK+ EA E L+ + +G
Sbjct: 691 KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 750
Query: 152 -----FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
N + A Q+ KM K G +PD+ T+ +L++ +C++G +
Sbjct: 751 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNI 795
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 49/209 (23%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIR 114
S+II+ K D A E+F + A V+ Y SL F M+
Sbjct: 169 SIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLD 228
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----------------FNPPVRS 158
G PD T +L++ +C GK+ EA E L+ + +G +
Sbjct: 229 VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISE 288
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC--------------------ADVN 198
A Q+ M K G PD + +L++ +C++G++ + DV
Sbjct: 289 ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVT 348
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
T+ + I + KE + EA LL +++ G
Sbjct: 349 TSSMLIDILCKEGKVIEANELLEVMIQRG 377
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M +G +PD ++T L++ +C SGK +A+ E+ D G P V ++ +++ K
Sbjct: 188 FKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCK 247
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G V + N L+E + G + D+ T I + + I EA +L ++ + G
Sbjct: 248 EGKVIE---ANELLEVMVHRGCI---LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGC 301
Query: 229 KLFP---SLGQFDDAFCFFSEMQIKTH 252
+ P + G C ++ I H
Sbjct: 302 R--PDAIAYGTLMKGLCQTGKINIALH 326
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M +G +PD ++T L++ +C SGK +A+ E+ D G P V ++ +++ + K
Sbjct: 481 FEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCK 540
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+G V + N L+E + + G + DV T + + + I +A +L
Sbjct: 541 KGKVIE---ANKLLEVVIQRGCI---LDVVTCTTLVKGLCMKHRISKATQL 585
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 52/221 (23%)
Query: 49 WKTIELMKPDSLSVFPQ----TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
WK + + + + + Q T S++I+ K G + A E+ C + Y +
Sbjct: 690 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 749
Query: 105 L--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-LSDK 150
L +C F++M + G +PD T+ L+ C +G ++ A E ++ LSD
Sbjct: 750 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDT 809
Query: 151 G-----FNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
G F P V S A+++ +M G +P++ ++ SLI C+SG
Sbjct: 810 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 869
Query: 190 EL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
+L G+ + T + I KE ID+A
Sbjct: 870 KLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 910
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 52/223 (23%)
Query: 57 PD--SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-- 108
PD + S+ P T S++I+ K G + A E+ C ++ Y++L +C
Sbjct: 43 PDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCME 102
Query: 109 ---------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-LSDKG-----FN 153
F+ M + G PD T+ L+ C +G + A + QE L+D G
Sbjct: 103 HRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCK 162
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------- 189
P + S A+++ +M QG +PD+ ++ SLI C SG
Sbjct: 163 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCL 222
Query: 190 -----ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
++G+ DV T+ + I KE + EA LL +V G
Sbjct: 223 FNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRG 265
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 53/224 (23%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC- 108
I+ ++PD T S++I+ K G + A E+ C ++ Y++L +C
Sbjct: 340 IKCIRPDV-----TTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCM 394
Query: 109 ----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-LSDKG-----F 152
F+ M + G PD T+ L+ C +G + A + QE L+D G
Sbjct: 395 EHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKC 454
Query: 153 NPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG------- 189
P + S A+++ +M QG +PD+ ++ +LI C SG
Sbjct: 455 KPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKC 514
Query: 190 ------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
++G+ DV T+ + I + K+ + EA +LL +++ G
Sbjct: 515 LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRG 558
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 59/193 (30%)
Query: 112 MIRKGFVPDKRTHTI---------LVNAWCSSGKMREAQEFLQELSDKG----------- 151
++R+G++PD T++I L++ C GK+ EA E L+ + +G
Sbjct: 36 IMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTL 95
Query: 152 -----FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN-------- 198
+ A + M K G PD T+ +L++ +C++G + + ++
Sbjct: 96 IKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTG 155
Query: 199 -----------TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------- 234
+ I I + K+ DEA L + G + P +
Sbjct: 156 RYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQG--MMPDVISYTSLIHGFCHS 213
Query: 235 GQFDDAFCFFSEM 247
G+++ A C F+EM
Sbjct: 214 GKWEKAKCLFNEM 226
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 23/125 (18%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G PD T IL+N C+ ++ E + + +G+ P + V I+ PD+
Sbjct: 5 GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDI------VTYSIR----PDV 54
Query: 176 ETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
T + LI+ +CK G++ G D+ T I + E I EA L +
Sbjct: 55 TTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMS 114
Query: 223 LVEDG 227
+ + G
Sbjct: 115 MQKLG 119
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 53/239 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+I+ F K G +D A +F++ V+ YNSL +C M KG
Sbjct: 206 VIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKG 265
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
+PD RT+ I++ +CS G++ EA L+++S G P V + A+
Sbjct: 266 VMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEAR 325
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ + M+++G P+ ++ L+ G L G+ + I I A
Sbjct: 326 SVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAY 385
Query: 208 SKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPN 255
+K +D+A + ++G + + G+ +DA F++M + PN
Sbjct: 386 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPN 444
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 80/169 (47%), Gaps = 29/169 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC-- 108
++LM D + + +++I + KHG +D A+ F + + V+ Y++ +H+
Sbjct: 363 LDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCK 422
Query: 109 ----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
F +M+ +G P+ + T L++ CS G+ ++ +E E+ ++G +P
Sbjct: 423 TGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIF 482
Query: 159 AKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL 191
+++ + K+G V PD+ ++N+LI+ C G++
Sbjct: 483 MNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKM 531
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 46/246 (18%)
Query: 49 WKTIELMKPDSL--SVFPQT--LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
WK +E + + + + P ++ I++ K G + A + F+ + V+ YN+
Sbjct: 461 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNT 520
Query: 105 L--HVCFV-----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L CFV RM+ G PD T+ L+N + +G++ +A +E+ K
Sbjct: 521 LIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKD 580
Query: 152 FN----------------PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA 195
+ +A+++ KM+ +G+ +ET+N+++ +C++ C
Sbjct: 581 VKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENS----CV 636
Query: 196 DVNTNKISIPAVSKEFMID-EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
D ++ SKEF +D F ++ N + +G+ D+A FS M ++ P
Sbjct: 637 D-EALRMFEDLRSKEFELDVRTFSIVINAL-------LKVGRIDEAKSLFSAMVLRGPVP 688
Query: 255 NRPVYA 260
+ Y+
Sbjct: 689 DVITYS 694
>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 654
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 103/264 (39%), Gaps = 50/264 (18%)
Query: 14 YFAAVNHIANIVRHDIYAE--RTLNRLNLTLISELSMWKTIELMKPDSLSVF-PQTLSLI 70
Y A + + HD Y + L+R+ ++W IE M+ ++ + PQ ++
Sbjct: 143 YSWASKQSGHRLDHDAYKAMIKVLSRMR----QFGAVWALIEEMRQENPHLITPQVFVIL 198
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------HVCFVRMIRKGFV 118
+ F ++ AVEV ++ + C+ ++ L +R +
Sbjct: 199 MRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYRWK 258
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQM 162
P + T L+ WC GK+ EA+ L ++ D G P + A +
Sbjct: 259 PSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDL 318
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+ +M ++ P+ ++ LI+++CK L G ADV T I K
Sbjct: 319 LKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCK 378
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPS 233
I + LL +++ GH FP+
Sbjct: 379 WGKIKRGYELLDEMIQQGH--FPN 400
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
FV M G D T++ L++ +C GK++ E L E+ +G P
Sbjct: 354 FVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEK 413
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ K++VN+M K G PDL +N++I CK GE+
Sbjct: 414 KEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEV 452
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 22/185 (11%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTI 126
+D AVE+ + + V++Y+SL C FV M KG PD +T
Sbjct: 166 VDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTG 225
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
L+++ C GK ++A + + +G P V + ++N M K+GSV + I +
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKE------AIGVLK 279
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDD---AFCF 243
K E G+ DV T I +S +DEA LL +V + + P++ F+ C
Sbjct: 280 KMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCD 339
Query: 244 FSEMQ 248
M+
Sbjct: 340 IGRMR 344
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 46/242 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
+MW E+++ ++ V P T + +I+ G + A +V C ++ YN
Sbjct: 309 AMWLLEEMVRGKNI-VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNL 367
Query: 105 LHVCFVRM--IRK-----------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L +R+ +RK G PD T++IL+ +C ++ A++ L + D+G
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427
Query: 152 FNPPVRSAKQMVNKMIKQGSVP---------------DLETFNSLIETICKSGEL----- 191
P + ++ M +QG + D+ ++++I CK+G+L
Sbjct: 428 IEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKE 487
Query: 192 --------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCF 243
GL D T I I +K ++ A +L + G P + FD
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASG--FLPDVAVFDSLIQG 545
Query: 244 FS 245
+S
Sbjct: 546 YS 547
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 31/189 (16%)
Query: 34 TLNRLNLTLISELSMWKTIELMKP-DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKC 90
T N L L+ + K +ELM SL + P T S++I+ F K +D A ++ +
Sbjct: 364 TYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTM 423
Query: 91 TAFNCQQCVLLYNSLHV--CFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMR 138
+ + Y L V C M+ + F D ++ +++ C +G ++
Sbjct: 424 RDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLK 483
Query: 139 EAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLI 182
A+E L+ + D+G P + +A ++ +M G +PD+ F+SLI
Sbjct: 484 TAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLI 543
Query: 183 ETICKSGEL 191
+ GE+
Sbjct: 544 QGYSTKGEI 552
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------------CFVRM 112
T S++++ K G +D AVE+ + NC+ +Y+ L H F+ M
Sbjct: 196 TYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEM 255
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G + D + L++A+C + KM+ L+++ KG NP R+ ++N +I +G
Sbjct: 256 ERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGET 315
Query: 173 ---------------PDLETFNSLIETICKSGELGLCADV 197
PD++++ +I+ C EL + +
Sbjct: 316 DEAFKIFRRMIKVCEPDVDSYTMIIKMFCGRKELDMALKI 355
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 32/156 (20%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+W + M+ + + + +I+ ++ + ++ AV FN +N + V +N L
Sbjct: 75 VWDLVNAMRNKEI-LNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLS 133
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C + +RK FVPD +T++IL+ W G P
Sbjct: 134 ALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGW-------------------GRAPN 174
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A+++ +MI G +PD T++ +++ +CK+G +
Sbjct: 175 LPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRV 210
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
++++ ++ M ++ +T ++II G D A ++F + C+ V Y +
Sbjct: 282 NVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKV-CEPDVDSYTMII 340
Query: 107 VCFV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
F M +K FVP T ++L+N C G +A L+E+ +KG
Sbjct: 341 KMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIR 400
Query: 154 PPVRSAKQMVNKMIKQG 170
P + ++ + +IK+G
Sbjct: 401 PSGATFGRLRHLLIKEG 417
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 97/243 (39%), Gaps = 46/243 (18%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+ +E M+ + S T +++I + K G A+EVF + + + + Y SL
Sbjct: 274 YAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYV 333
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F R ++KG PD + L+N+ C+ G M A E + E+ K P
Sbjct: 334 FSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPD 393
Query: 156 ----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199
+ A+ ++++M K+G PDL ++N+LI G++ V
Sbjct: 394 DMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRV-- 451
Query: 200 NKISIPAVSKEFMIDEAFR---LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
++ M+D+ F + N + G + Q DDA EM K P+
Sbjct: 452 ---------RDEMMDKGFNPTLMTYNALIQG---LCKIRQGDDAENLMKEMVAKGITPDD 499
Query: 257 PVY 259
Y
Sbjct: 500 STY 502
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 57/258 (22%)
Query: 41 TLISELSMWKTIELMKPDSLSVFPQTLS------------LIIEEFGKHGLIDNAVEVFN 88
T + +S W I M+ D++ VF + L+ +I + G +D A++
Sbjct: 185 TYATLISGWCKIGRME-DAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYRE 243
Query: 89 KCTAFNCQQCVLLYNSL-HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSG 135
V YN L H F+ M + GF PD T+ IL+N +C G
Sbjct: 244 DMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEG 303
Query: 136 KMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFN 179
++A E +E+S KG V+ ++ N +K+G PD+ +N
Sbjct: 304 NEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYN 363
Query: 180 SLIETICKSGELGLCADV--NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
+LI + C G++ ++ K IP + + R C LG+
Sbjct: 364 ALINSHCTGGDMERAYEIMAEMEKKRIP--PDDMTYNTLMRGFC-----------LLGRL 410
Query: 238 DDAFCFFSEMQIKTHPPN 255
D+A EM + P+
Sbjct: 411 DEARTLIDEMTKRGIQPD 428
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M ++G PD ++ L++ + G +++A E+ DKGFNP + +
Sbjct: 420 MTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQ 479
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A+ ++ +M+ +G PD T+ SLIE + E
Sbjct: 480 GDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 75/222 (33%), Gaps = 76/222 (34%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------------ 155
R G PDK T+ L++ WC G+M +A + E+ KG P
Sbjct: 176 RGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKL 235
Query: 156 ----------------------------------VRSAKQMVNKMIKQGSVPDLETFNSL 181
A ++ +M K G PD+ T+N L
Sbjct: 236 DVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNIL 295
Query: 182 IETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
I CK G + G+ A T I S++ + E RL V+ G
Sbjct: 296 INGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGI 355
Query: 229 K----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ ++ +L G + A+ +EM+ K PP+ Y
Sbjct: 356 RPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTY 397
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M GF + ++ L++ SG REA E + + +G P +++ + M+
Sbjct: 182 FGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSAL---MVA 238
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG- 227
G D ET SL+E + LGL ++ T I I + + IDEA R++ + +DG
Sbjct: 239 TGKRRDTETVKSLLEEM---ESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGC 295
Query: 228 -------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
L +L G+ DDA F +M+ +H P+R Y
Sbjct: 296 GPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTY 337
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 101/244 (41%), Gaps = 48/244 (19%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W MK + T +L+++ GK G I+ E++ + +C+ + +N +
Sbjct: 810 WNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIAN 869
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
V+ ++ F P T+ L++ SG++ EA+E +E+ D G P
Sbjct: 870 LVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPN 929
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCA 195
V +A ++ +M+++G PDL+++ SL+ +C++G L
Sbjct: 930 NAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFE 989
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ + + +++ MID R H++ ++A + EMQ + P+
Sbjct: 990 KLKQTGLYLDSIAYNLMIDGLGR--------SHRI-------EEALTLYDEMQSRGINPD 1034
Query: 256 RPVY 259
Y
Sbjct: 1035 LFTY 1038
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 40/226 (17%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FV 110
P T +++ K G ++ A E+F + + C+ +YN L C F
Sbjct: 895 PCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFK 954
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NP 154
RM+R+G PD +++T LV C +G++ +A + ++L G +
Sbjct: 955 RMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSH 1014
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ A + ++M +G PDL T+NSLI + +G + + I F +
Sbjct: 1015 RIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYN 1074
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
R G+ + G D A+ + M + PN +A
Sbjct: 1075 ALIR--------GYSMS---GNSDSAYAVYKRMMVGGCSPNTGTFA 1109
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 87/217 (40%), Gaps = 45/217 (20%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
+SL + P T ++ I G+ G ID A + RM
Sbjct: 256 ESLGLKPNIYTYTICIRVLGRAGRIDEACRIMK----------------------RMEDD 293
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G PD T+T+L++A C++GK+ +A E ++ P + M++K G + +
Sbjct: 294 GCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRV 353
Query: 176 ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL- 234
+ F S +E G DV T I + A+ K IDEAF LL + + G + P+L
Sbjct: 354 KEFWSEMEAD------GYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQG--VLPNLH 405
Query: 235 ------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ DDA F+ M+ P Y
Sbjct: 406 TYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTY 442
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 57/256 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M+ D + T ++++ K G ID A + + + YN+L +R+ R
Sbjct: 360 MEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNR 419
Query: 115 K-------------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
G VP T+ + ++ + SG+ +A E +++ +G P +
Sbjct: 420 LDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNA 479
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNK 201
R AK + N++ G PD T+N +++ K+G++ L +D++ N+
Sbjct: 480 SLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQ 539
Query: 202 IS---------IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDD 239
I + K +DEA+++ C L + KL P++ GQ
Sbjct: 540 CEPDIIVINSLINTLYKAGRVDEAWKMFCRLKD--MKLAPTVVTYNTLIAGLGKEGQVQR 597
Query: 240 AFCFFSEMQIKTHPPN 255
A F+ M PPN
Sbjct: 598 AMELFASMTGNGCPPN 613
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 43/219 (19%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ ++ M+ D T +++I+ G +D+A+E+F K A + + + Y ++ F
Sbjct: 285 RIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKF 344
Query: 110 V-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
M G+ PD T TILVNA C +G + EA L
Sbjct: 345 SDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLL------------ 392
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ M KQG +P+L T+N+LI + + L D+ N ++ V +
Sbjct: 393 -------DVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAY----T 441
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ L + + G+ D A F +M+I+ PN
Sbjct: 442 YILFID-------FYGKSGRSDKALETFEKMKIRGIAPN 473
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 87/217 (40%), Gaps = 49/217 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+ PDS+ T +++++ + K G +D A+E+ + + C+ +++ NSL
Sbjct: 505 LAPDSV-----TYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGR 559
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
F R+ P T+ L+ G+++ A E ++ G P
Sbjct: 560 VDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNT 619
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG------------L 193
V A +M+ KM +PD+ TFN++I + + L
Sbjct: 620 ILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKML 679
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
D T +P V K ++++AF++ + V H+L
Sbjct: 680 TPDCVTLCTLLPGVVKNGLMEDAFKIAEDFV---HRL 713
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 98/267 (36%), Gaps = 55/267 (20%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
+WK E M +S T S +IE + K D A +V + C + YN L
Sbjct: 228 LWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIA 287
Query: 108 CFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
R M G VPD T+ L+N C S + EA+ L E+S P
Sbjct: 288 GLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 347
Query: 155 PV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA--- 195
V A +M+ +M+ G P+ T+++L+ +CK G++ +
Sbjct: 348 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 407
Query: 196 ----------DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPS 233
D T + I + +AFRLL + G H L S
Sbjct: 408 KQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 467
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G+ + A EM K PN VYA
Sbjct: 468 -GEPEKASDLLEEMTTKGLKPNAFVYA 493
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 29/164 (17%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVR 157
+ G VPD ++ L++ C + +A L E+S KG +P +
Sbjct: 657 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 716
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A+ + N ++ +G VP+ T+ SLI+ CK G++ G+ D +
Sbjct: 717 YARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLT 776
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
S +++A L+ + GH S D FC +MQ
Sbjct: 777 TGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQ 820
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------PVRS------- 158
M G P+ T++I+++ C SG+ +A + L+E++ KG P P+ S
Sbjct: 445 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 504
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ +KM K +PDL +NSLI + K G +
Sbjct: 505 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV 540
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 61/253 (24%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
S+L T + +KP++ P +I + + G + A E+F+K T N + YN
Sbjct: 474 SDLLEEMTTKGLKPNAFVYAP-----LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYN 528
Query: 104 SLHVC-------------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
SL F +M +G +P++ T++ L++ + +G +
Sbjct: 529 SLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE------------ 576
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADV 197
SA+Q+V +M+ G P+ + L+E+ KS ++ G+ D
Sbjct: 577 -------SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 629
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH----KLFPSL-------GQFDDAFCFFSE 246
I I +S ++ AFR+L + ++G ++ SL + AF E
Sbjct: 630 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 689
Query: 247 MQIKTHPPNRPVY 259
M K PN Y
Sbjct: 690 MSKKGVDPNIVCY 702
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 44/177 (24%)
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----------------MIKQ 169
+LV+ + SG++++A E + + D+G P +R ++ M+
Sbjct: 179 VLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 238
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ T+++LIE CK E G + T + I + + ++EA
Sbjct: 239 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 298
Query: 217 FRLLCNLVEDGHKLFP---SLGQFDDAFC----------FFSEMQIKTHPPNRPVYA 260
F ++ + G L P + G + C EM PN VYA
Sbjct: 299 FGFKKDMEDYG--LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYA 353
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
LHV ++ +G VP+ T +++ +GK+ E EL K R +
Sbjct: 826 LHV----IMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFM 881
Query: 165 KMIKQGSVPDLETFNSLIETICKSGEL 191
MI QG +P L+ + +I CK G L
Sbjct: 882 DMINQGKIP-LDVVDDMIRDHCKEGNL 907
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 20/138 (14%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
I++E K G +D + +N C+ + Y F ++ KG VP+ T+T L++
Sbjct: 686 ILDEMSKKG-VDPNIVCYNALIDGLCKSGDISY--ARNVFNSILAKGLVPNCVTYTSLID 742
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
C G + A E+ G P + A ++ +M +G
Sbjct: 743 GSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA- 801
Query: 174 DLETFNSLIETICKSGEL 191
+ +FN+L++ CK G++
Sbjct: 802 SISSFNNLVDGFCKRGKM 819
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 98/267 (36%), Gaps = 55/267 (20%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
+WK E M +S T S +IE + K D A +V + C + YN L
Sbjct: 101 LWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIA 160
Query: 108 CFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
R M G VPD T+ L+N C S + EA+ L E+S P
Sbjct: 161 GLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 220
Query: 155 PV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA--- 195
V A +M+ +M+ G P+ T+++L+ +CK G++ +
Sbjct: 221 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 280
Query: 196 ----------DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPS 233
D T + I + +AFRLL + G H L S
Sbjct: 281 KQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 340
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G+ + A EM K PN VYA
Sbjct: 341 -GEPEKASDLLEEMTTKGLKPNAFVYA 366
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 29/164 (17%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVR 157
+ G VPD ++ L++ C + +A L E+S KG +P +
Sbjct: 530 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 589
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A+ + N ++ +G VP+ T+ SLI+ CK G++ G+ D +
Sbjct: 590 YARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLT 649
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
S +++A L+ + GH S D FC +MQ
Sbjct: 650 TGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQ 693
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 35/172 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M+ +G + D R + IL++ SSG M A L E+ G P V
Sbjct: 490 FKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCK 549
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS---IP-AVS 208
A ++++M K+G P++ +N+LI+ +CKSG++ +V + ++ +P V+
Sbjct: 550 TADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVT 609
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID + + +G +AF ++EM P+ VY+
Sbjct: 610 YTSLIDGSCK---------------VGDISNAFYLYNEMLATGITPDAFVYS 646
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------PVRS------- 158
M G P+ T++I+++ C SG+ +A + L+E++ KG P P+ S
Sbjct: 318 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 377
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ +KM K +PDL +NSLI + K G +
Sbjct: 378 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV 413
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 61/253 (24%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
S+L T + +KP++ P +I + + G + A E+F+K T N + YN
Sbjct: 347 SDLLEEMTTKGLKPNAFVYAP-----LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYN 401
Query: 104 SLHVC-------------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
SL F +M +G +P++ T++ L++ + +G +
Sbjct: 402 SLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE------------ 449
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADV 197
SA+Q+V +M+ G P+ + L+E+ KS ++ G+ D
Sbjct: 450 -------SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 502
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH----KLFPSL-------GQFDDAFCFFSE 246
I I +S ++ AFR+L + ++G ++ SL + AF E
Sbjct: 503 RIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 562
Query: 247 MQIKTHPPNRPVY 259
M K PN Y
Sbjct: 563 MSKKGVDPNIVCY 575
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 44/177 (24%)
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----------------MIKQ 169
+LV+ + SG++++A E + + D+G P +R ++ M+
Sbjct: 52 VLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGA 111
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ T+++LIE CK E G + T + I + + ++EA
Sbjct: 112 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 171
Query: 217 FRLLCNLVEDGHKLFP---SLGQFDDAFC----------FFSEMQIKTHPPNRPVYA 260
F ++ + G L P + G + C EM PN VYA
Sbjct: 172 FGFKKDMEDYG--LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYA 226
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 65 QTLSLIIEEFGK-HGLI---DNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120
Q + LI E F + H I +N V+ F C Q+ + L LHV ++ +G VP+
Sbjct: 660 QAMFLIEEMFLRGHASISSFNNLVDGF--CKRGKMQETLKL---LHV----IMGRGLVPN 710
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNS 180
T +++ +GK+ E EL K R + MI QG +P L+ +
Sbjct: 711 ALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIP-LDVVDD 769
Query: 181 LIETICKSGEL 191
+I CK G L
Sbjct: 770 MIRDHCKEGNL 780
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 34/165 (20%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
KP+++S S+II+ K G D A E+F + A V+ Y SL F R
Sbjct: 480 KPNAISY-----SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 534
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----------- 151
M+ G PD T ++L++ C GK+ EA E L+ + +G
Sbjct: 535 KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 594
Query: 152 -----FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
N + A Q+ KM K G +PD+ T+ +L++ +C++G +
Sbjct: 595 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNI 639
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 48/210 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++I+ F K G + A E+ C ++ Y++L +C F+ M
Sbjct: 12 TSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSM 71
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREA----QEFLQELSDKGFN--PPVRS-------- 158
+ G PD + L+ C +GK+ A QE L + S G P + S
Sbjct: 72 KKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGL 131
Query: 159 --------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADV 197
A+++ +M QG +PD+ ++ SLI C+SG ++G+ +DV
Sbjct: 132 CKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDV 191
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
T+ + I + KE + EA LL +++ G
Sbjct: 192 TTSSMLIDILCKEGKVIEANELLEVMIQRG 221
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M +G +PD ++T L++ +C SGK +A+ E+ D G V ++ +++ + K
Sbjct: 144 FKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCK 203
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+G V + N L+E + + G + D+ T I + + I EA RL ++ + G
Sbjct: 204 EGKVIE---ANELLEVMIQRGCI---LDIVTYSTLIKGLCMKHRISEATRLFMSMQKLG 256
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M +G +PD ++T L++ +C SGK +A+ E+ D G P V ++ +++ + K
Sbjct: 325 FKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCK 384
Query: 169 QGSVPDLETFNSLIETICKSG 189
+G V + N L+E + + G
Sbjct: 385 KGKVIE---ANKLLEVVIQRG 402
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 52/221 (23%)
Query: 49 WKTIELMKPDSLSVFPQ----TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
WK + + + + + Q T S++I+ K G + A E+ C + Y +
Sbjct: 534 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 593
Query: 105 L--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-LSDK 150
L +C F++M + G +PD T+ L+ C +G ++ A E ++ LSD
Sbjct: 594 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDT 653
Query: 151 G-----FNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
G F P V S A+++ +M G +P++ ++ SLI C+SG
Sbjct: 654 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 713
Query: 190 EL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
+L G+ + T + I KE ID+A
Sbjct: 714 KLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 50/184 (27%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----------------FNPP 155
M+ G PD T +L++ +C GK+ EA E L+ + +G
Sbjct: 1 MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN----------------- 198
+ A Q+ M K G PD + +L++ +C++G++ + ++
Sbjct: 61 ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120
Query: 199 --TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCF 243
+ I I + K+ DEA L + G + P + G+++ A C
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQG--MMPDVISYTSLIHGFCRSGKWEKAKCL 178
Query: 244 FSEM 247
F+EM
Sbjct: 179 FNEM 182
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 48/210 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S++I+ K G + A E+ C ++ Y++L +C F+ M
Sbjct: 193 TSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSM 252
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-LSDKG-----FNPPVRS-------- 158
+ G PD + L+ C +G + A + QE L+D G P + S
Sbjct: 253 QKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGL 312
Query: 159 --------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADV 197
A+++ +M QG +PD+ ++ +LI C SG ++G+ DV
Sbjct: 313 CKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDV 372
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
T+ + I + K+ + EA +LL +++ G
Sbjct: 373 TTSSVLIDMLCKKGKVIEANKLLEVVIQRG 402
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 45/188 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I F + G + A+++ N C + YN L +C F M
Sbjct: 156 TYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDM 215
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG P+ + IL+N C +G ++ A EFL++ MI +G
Sbjct: 216 MSKGLNPNNISCNILINGLCRTGNIQHALEFLRD-------------------MIHRGLT 256
Query: 173 PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD+ T+NSLI +CK+G G+C D T I KE M D+A L
Sbjct: 257 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 316
Query: 220 LCNLVEDG 227
L V+ G
Sbjct: 317 LSRGVDSG 324
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 40/181 (22%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRS 158
KG P+ T+TIL++ +C G++ EA+ L E+S KG + V+
Sbjct: 43 KGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQD 102
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCAD-----VNTNKISIPAVSK 209
A M M +G PD+ TFNSLI +CK + LGL D V N I+ +
Sbjct: 103 ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 162
Query: 210 EFM----IDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPP 254
F+ + EA +L+ +++ G + L +L G + F +M K P
Sbjct: 163 AFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNP 222
Query: 255 N 255
N
Sbjct: 223 N 223
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
KPD + T +++I+ F K G +D A+ K ++ CQ V+ +N + +C
Sbjct: 248 KPDVV-----TYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRW 302
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---- 158
M+RKG +P T IL+N C G + +A L+ + G P RS
Sbjct: 303 MDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 362
Query: 159 ------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A + + M+ +G PD+ T+N L+ +CK G++
Sbjct: 363 IQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKV 407
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 44/193 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M KG PD T+ +L+ +C G++ EA FL++L G P V S
Sbjct: 239 FNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCS 298
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---------NTNKIS 203
A +++ M+++G +P + TFN LI +C+ G LG +V N S
Sbjct: 299 GGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRS 358
Query: 204 IPAVSKEFM----IDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSE 246
+ + F ID A L +V G +P + G+ DDA S+
Sbjct: 359 FNPLIQGFCNGKGIDRAIEYLEIMVSRG--CYPDIVTYNILLTALCKDGKVDDAVVILSQ 416
Query: 247 MQIKTHPPNRPVY 259
+ K P+ Y
Sbjct: 417 LSSKGCSPSLISY 429
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 44/215 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------VRMIRK- 115
T +++I+ K + A+++FN+ C+ V+ YN L F +R ++K
Sbjct: 218 TCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKL 277
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G PD +H +++ + CS G+ +A + L + KG P V + ++N
Sbjct: 278 PSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLL 337
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
M K G P+ +FN LI+ C + G D+ T I
Sbjct: 338 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNIL 397
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
+ A+ K+ +D+A +L L G PSL ++
Sbjct: 398 LTALCKDGKVDDAVVILSQLSSKGCS--PSLISYN 430
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +G PD T+ IL+ A C GK+ +A L +LS KG +P + S +++ ++K G
Sbjct: 382 MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGK 441
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
E L+E +C GL D+ T + +S+E + EA +
Sbjct: 442 A---ELAVELLEEMCYK---GLKPDLITCTSVVGGLSREGKVREAMK 482
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 34/169 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH---------- 106
P+S S P +I+ F ID A+E + C ++ YN L
Sbjct: 354 PNSRSFNP-----LIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVD 408
Query: 107 ---VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
V ++ KG P ++ +++ GK A E L+E+ KG P + + +V
Sbjct: 409 DAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVV 468
Query: 164 NKMIKQGSV----------------PDLETFNSLIETICKSGELGLCAD 196
+ ++G V P+ +NS+I +CKS + L D
Sbjct: 469 GGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAID 517
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 16/74 (21%)
Query: 134 SGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLET 177
+G++ E FL+ +++KG +P V ++A Q++ + + G+V D+ +
Sbjct: 92 NGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTS 151
Query: 178 FNSLIETICKSGEL 191
+N LI CKSGE+
Sbjct: 152 YNVLISGYCKSGEI 165
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 37/173 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M KG PD T L+ +C G+ + A + + L + G V S +++ K G
Sbjct: 105 MTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGE 164
Query: 172 V-------------PDLETFNSLIETICKSGELGLCA-------------DVNTNKISIP 205
+ P+ T+++++ ++C G+L DV T + I
Sbjct: 165 IEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLID 224
Query: 206 AVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEM 247
A KE + +A +L + G K F G+ D+A F ++
Sbjct: 225 ATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKL 277
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 106/247 (42%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ F K G + A ++F++ + ++ YNSL F M
Sbjct: 328 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 387
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
+ K +PD T+ L+ +C + ++ E E +E+S +G +N ++
Sbjct: 388 VSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 447
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A+++ KM+ G PD+ T++ L++ +CK G+L + ++ T I
Sbjct: 448 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIM 507
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTH 252
I + K +++ + L C+L G K ++ ++ G ++A F EM+
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 567
Query: 253 PPNRPVY 259
P+ Y
Sbjct: 568 LPDSGCY 574
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 35/169 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
+M++ G+ PD T + L+N +C ++ EA + ++ + G+ P
Sbjct: 141 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHN 200
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKE 210
A ++++M+ +G PDL T+ +++ +CK G+ L L + KI
Sbjct: 201 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKI-------- 252
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
EA ++ N + DG DDAF F++M+ K P+ Y
Sbjct: 253 ----EANVVIYNTIIDG---LCKYKHMDDAFDLFNKMETKGIKPDVFTY 294
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 31/202 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++ K G ID A+ + K + V++YN++ +C F +M
Sbjct: 223 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM 282
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG PD T+ L++ C+ G+ +A L ++ ++ NP V +
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A+++ ++MI++ P++ T+NSLI C L + T +S + +
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402
Query: 217 FRLLCNL--VEDGHKLFPSLGQ 236
+ C VE+G +LF + Q
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQ 424
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 33/192 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGFV----- 118
T + +I+ + G D A ++F K + ++ Y+ L +C + K V
Sbjct: 433 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 492
Query: 119 ------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
P+ T+ I++ C +GK+ + + LS KG P V
Sbjct: 493 QKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK 552
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A + +M + G++PD +N+LI + G+ A++ S V I
Sbjct: 553 EEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTIS-- 610
Query: 217 FRLLCNLVEDGH 228
++ N++ DG
Sbjct: 611 --MVINMLHDGR 620
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M RK VPD T+T +++ C SGKM EA+E E+ KG P
Sbjct: 370 FDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCK 429
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
++ A + N+M+++G P++ T+ +L + +CK+GE+ GL +V T
Sbjct: 430 AGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYT 489
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQIKTH 252
+ + K I++ +L+ + D +P + DA+C EM K H
Sbjct: 490 YNTIVNGLCKIGNIEQTVKLMEEM--DLAGFYPDTITYTTLMDAYCKMGEMA-KAH 542
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 20/139 (14%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M++KG P+ T+T L + C +G++ A E L E+S KG P V + +VN + K G
Sbjct: 442 QMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIG 501
Query: 171 SV----------------PDLETFNSLIETICKSGELGLCAD---VNTNKISIPAVSKEF 211
++ PD T+ +L++ CK GE+ + + NK P +
Sbjct: 502 NIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFN 561
Query: 212 MIDEAFRLLCNLVEDGHKL 230
++ F + ++EDG +L
Sbjct: 562 VLMNGF-CMSGMLEDGERL 579
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 44/187 (23%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KG PD+ + ++ C +G++ EA++ L+ + G P V +
Sbjct: 306 KGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSA 365
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A ++ ++M ++ VPD+ T+ S+I ICKSG++ GL D T I
Sbjct: 366 ACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALID 425
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTH 252
K + EAF + +V+ G L P++ G+ D A EM K
Sbjct: 426 GYCKAGEMKEAFSVHNQMVQKG--LTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGL 483
Query: 253 PPNRPVY 259
PN Y
Sbjct: 484 QPNVYTY 490
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ K P T +L+N +C SG + + + ++ + +KG P
Sbjct: 548 MLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNN 607
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+R+ ++ M +G +PD T+N LI+ CK+
Sbjct: 608 MRATTEIYKAMHDRGVMPDSNTYNILIKGHCKA 640
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 33/155 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+IE + G++ NA FN C N + +Y ++H +G +PD T+
Sbjct: 579 LIEWMLEKGIMPNAT-TFNSLMKQYCIKNNMRATTEIYKAMH-------DRGVMPDSNTY 630
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIK 168
IL+ C + M+EA +E+ +KG++ + A+++ +M K
Sbjct: 631 NILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRK 690
Query: 169 QGSVPDLETFNSLIETICKSGE----LGLCADVNT 199
G V + + ++ ++ + G L LC + T
Sbjct: 691 HGLVAEKDIYDIFVDVNYEEGNWEITLELCDEFMT 725
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCT-AFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
+ EEF + G+ N V C +C + H V+M +G PD ++ ++V
Sbjct: 229 VFEEFPELGVCWNTVS----CNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVV 284
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSV 172
+ +C G++ + + + EL KG P V A+Q++ M K G
Sbjct: 285 SGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVF 344
Query: 173 PDLETFNSLIETICKSGELG 192
PD + ++I CK G +
Sbjct: 345 PDNVVYTTVISGFCKLGNVS 364
>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
Length = 501
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 22/187 (11%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
KPD +S + ++ G G +D A +VF++ + C+ YN+L
Sbjct: 281 KPDVVSY-----TTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNL 335
Query: 106 ---HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
F M+RKG++P+ T+T+L+ C +GK+ A + L + +G P V++ +
Sbjct: 336 EDAVAVFDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVL 395
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM-IDEAFRLLC 221
+ +++G ++E L ET+ K E D IS V K + A R++
Sbjct: 396 IRYSLEEG---EIEKGLDLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVV 452
Query: 222 NLVEDGH 228
+V+ G+
Sbjct: 453 EMVDRGY 459
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 21/102 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN-----PPVRS------- 158
+M+ G P K T+ I++ + SG+++ A +F ++ +G N P V S
Sbjct: 234 QMVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHG 293
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+++ ++M +G P T+N+LI+ CK G L
Sbjct: 294 LGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNL 335
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
+ S++I + +D A E+ N+ Q V+ Y SL +C F RM
Sbjct: 89 SYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRM 148
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ +G PD + +L++ + G M EA +E+ +KG P V +
Sbjct: 149 VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ + M++QG VP++ TFN+L++ CK G++
Sbjct: 209 GRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDM 243
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 29/156 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + ++ F + G +F C + +N+L H F+ M
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEM 253
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD ++ L+ CS GK EAQ L+E+ G P + S +++ K G++
Sbjct: 254 RSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGAL 313
Query: 173 ----------------PDLETFNSLIETICKSGELG 192
PD +++++I+ +C++G++G
Sbjct: 314 DHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVG 349
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +++ F K G + A +F + + C V+ YN+L +C M
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREM 288
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
IR G PD ++ IL++ + SG + A + E+ G P S +++
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKV 348
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL 191
MI GS PD L+ +C+ L
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERL 383
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 24/120 (20%)
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKE 210
N M+ G VP+ T+ L+ ++C++ G +V + I I + +
Sbjct: 41 NDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRG 100
Query: 211 FMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+DEA LL +++ GH+ + SL G+ +A FS M + PP+ VY
Sbjct: 101 QKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVY 160
>gi|147791423|emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
Length = 340
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVC-----------FVRMI--RKGFVP 119
+GK G+ ++A ++F++ NC++ V+ +N+L VC F + + G VP
Sbjct: 63 YGKAGMFEHAHKLFDEXPKLNCERTVVSFNALLSVCVXSKKFDKIDGFFQELPGNLGVVP 122
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
D ++ I+VNA+C G + A L E+ G P + + ++N + GS D E
Sbjct: 123 DVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIW 182
Query: 180 SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------H 228
L++ + + +V + + V E + EA L+ + G
Sbjct: 183 DLMK------KNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLM 236
Query: 229 KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K F + G ++A ++SE+ PP R Y
Sbjct: 237 KGFCNAGNLEEAKRWYSEIARNELPPVRATY 267
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 40/153 (26%)
Query: 57 PDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
P +L V P +S +I+ F + G +D+A+ V ++ M +
Sbjct: 115 PGNLGVVPDVVSYNIIVNAFCEMGSLDSALSVLDE----------------------MEK 152
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
G PD T L+NA+ +G + ++ + P VRS
Sbjct: 153 VGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSE 212
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +++++M G PD+ T NSL++ C +G L
Sbjct: 213 AVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNL 245
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 34 TLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N + L+ S+ K I+L + S P T +I+ K G ++ A + F +
Sbjct: 860 THNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEM 919
Query: 91 TAFNCQQCVLLYNSLH-----------VC--FVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ C LYN L C F RM+++G PD ++++I+V+ C GK+
Sbjct: 920 LDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKV 979
Query: 138 REAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSL 181
+A + +EL G +P V A + ++M +G PDL T+N+L
Sbjct: 980 DDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNAL 1039
Query: 182 IETICKSG 189
I + +G
Sbjct: 1040 ILNLGIAG 1047
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 32/191 (16%)
Query: 54 LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
L + +SL + P T ++ I G+ G ID A + R
Sbjct: 250 LQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILK----------------------R 287
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G PD T+T+L++A C++GK+ A+E ++ P + +++K G
Sbjct: 288 MDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGD 347
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
+ ++ F S +E G DV T I I A+ K +DEAF L + + G +
Sbjct: 348 LDAIKEFWSEMEAD------GYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQG--VA 399
Query: 232 PSLGQFDDAFC 242
P+L ++ C
Sbjct: 400 PNLHTYNTLIC 410
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 30/219 (13%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFVR------------ 111
+T + ++E H +++ V VFN ++ + Y ++ V ++R
Sbjct: 123 ETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEK 182
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M + GFV + ++ L++ SG REA + + + +G P +++ + M+ G
Sbjct: 183 MRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSAL---MVALGK 239
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG---- 227
D+ET L++ + LGL ++ T I I + + IDEA+ +L + + G
Sbjct: 240 RRDIETVMGLLQEM---ESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPD 296
Query: 228 ----HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
L +L G+ ++A F +M+ +H P+R Y
Sbjct: 297 VVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTY 335
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 36/184 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+ PD++ T ++++ +GK G +D+A+++ ++ C V++ NSL + R
Sbjct: 503 LAPDAI-----TYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADR 557
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQ------EFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ AW +M+E + + L+ G V+ A + MI
Sbjct: 558 ------------VDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIA 605
Query: 169 QGSVPDLETFNSLIETICKSGELGLC-------------ADVNTNKISIPAVSKEFMIDE 215
P+ +FN+L++ +CK+GE+ L DV T I + KE ++
Sbjct: 606 DDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNY 665
Query: 216 AFRL 219
AF L
Sbjct: 666 AFWL 669
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 58/240 (24%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVL-LYNSL-------------HVCFVRMIRKGFVPDK 121
KHG +A VF K T C L YNSL F +M G PD
Sbjct: 764 KHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDV 823
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV--------- 172
T+ + ++A SGK++E + +E+ +G P + ++ ++K S+
Sbjct: 824 FTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYD 883
Query: 173 -------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
P T+ LI+ + K G L G + I + K+
Sbjct: 884 LMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGD 943
Query: 213 IDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
++ A L +V++G + P L G+ DDA +F E+++ P+ Y
Sbjct: 944 VETACELFRRMVKEGIR--PDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCY 1001
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 42/220 (19%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY------ 102
+ T+++MK ++ T + +I + +D A+E+FN + + Y
Sbjct: 387 FGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDY 446
Query: 103 -------NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F +M G VP+ + + G++ EA+EF L G P
Sbjct: 447 YGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPD 506
Query: 156 ----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG---------- 189
V A +++++M + G P++ NSLI+T+ K+
Sbjct: 507 AITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQ 566
Query: 190 ---ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
E+ L V T + + KE + EA L ++ D
Sbjct: 567 RMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIAD 606
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 29/151 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRMIR 114
++++ FGK G ++ A E+F + + + Y+ + C F +
Sbjct: 932 NILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKL 991
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
G PD + +++N S ++ EA E+ ++G P V
Sbjct: 992 SGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEE 1051
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A +M ++ +G P++ T+N+LI SG
Sbjct: 1052 AGKMYEELQLKGLEPNVFTYNALIRGHSMSG 1082
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 85/239 (35%), Gaps = 77/239 (32%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY-------------NSLHVCFVRM 112
T +++I+ G ++NA E+F K A + + + Y +++ + M
Sbjct: 299 TYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEM 358
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--------- 163
G++PD T TIL++A C GK+ EA L + +G P + + ++
Sbjct: 359 EADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRL 418
Query: 164 ------------------------------------------NKMIKQGSVPDLETFNSL 181
KM G VP++ N+
Sbjct: 419 DEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNAS 478
Query: 182 IETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ ++ + G L GL D T I + K +D+A +LL + E+G
Sbjct: 479 LYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENG 537
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTI 126
+D AVE+ + + V++Y+SL FV M KG PD +T
Sbjct: 166 VDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTG 225
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
L+++ C GK ++A + + +G P V + ++N M K+GSV + I +
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKE------AIGVLK 279
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDD---AFCF 243
K E G+ DV T I +S +DEA LL +V + + P++ F+ C
Sbjct: 280 KMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCD 339
Query: 244 FSEMQ 248
M+
Sbjct: 340 IGRMR 344
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 46/242 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
+MW E+++ ++ V P T + +I+ G + A +V C ++ YN
Sbjct: 309 AMWLLEEMVRGKNI-VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNL 367
Query: 105 LHVCFVRM--IRK-----------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L +R+ +RK G PD T++IL+ +C ++ A++ L + D+G
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427
Query: 152 FNPPVRSAKQMVNKMIKQGSVP---------------DLETFNSLIETICKSGEL----- 191
P + ++ M +QG + D+ ++++I CK+G+L
Sbjct: 428 IEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKE 487
Query: 192 --------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCF 243
GL D T I I +K ++ A +L + G P + FD
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASG--FLPDVAVFDSLIQG 545
Query: 244 FS 245
+S
Sbjct: 546 YS 547
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 31/189 (16%)
Query: 34 TLNRLNLTLISELSMWKTIELMKP-DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKC 90
T N L L+ + K +ELM SL + P T S++I+ F K +D A ++ +
Sbjct: 364 TYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTM 423
Query: 91 TAFNCQQCVLLYNSLHV--CFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMR 138
+ + Y L V C M+ + F D ++ +++ C +G ++
Sbjct: 424 RDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLK 483
Query: 139 EAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLI 182
A+E L+ + D+G P + +A ++ +M G +PD+ F+SLI
Sbjct: 484 TAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLI 543
Query: 183 ETICKSGEL 191
+ GE+
Sbjct: 544 QGYSTKGEI 552
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 23/201 (11%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
VFP TL+ +I + K G + A+ +F T + + V+ YN+L F +
Sbjct: 464 GVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKA 523
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
MI + P + +IL+N +CS G + EA E+ +KG P + + ++
Sbjct: 524 KELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKG 583
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
++ G +L N + T+ G C NT I + KE D AF L+ N+ E
Sbjct: 584 YLRAG---NLSKANDFLNTMISEGVPPDCITYNT---LINSFVKEENFDRAFFLINNMEE 637
Query: 226 DGHKLFPSLGQFDDAFCFFSE 246
G L P+L ++ FS
Sbjct: 638 RG--LLPNLVTYNAILGGFSR 656
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
WK E V TL++++ K G +DN ++ ++ YN+L
Sbjct: 209 WKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNA 268
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG---- 151
+ R M KG P T+ L+N C G A+ L E+ G
Sbjct: 269 YCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPN 328
Query: 152 ---FNP---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
FNP V A+++ N+M+++G VPDL +F+S++ ++GELG
Sbjct: 329 AATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELG 381
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 45/214 (21%)
Query: 56 KPDSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC--- 108
K + + P T+ +++I + ++ + A+++ N+ C V+ YN+L +C
Sbjct: 389 KMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGK 448
Query: 109 --------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
F M+ +G PD T T L++ +C G M +A + ++ +RS K
Sbjct: 449 MLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMT-------LRSLK 501
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
PD+ T+N+L++ CK GE+ ++ + IS + F +F +L
Sbjct: 502 ------------PDVVTYNTLMDGFCKVGEMEKAKELWYDMIS----REIFPSYISFSIL 545
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
N F SLG +AF + EM+ K P
Sbjct: 546 IN-------GFCSLGLVSEAFRLWDEMKEKGIKP 572
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 22/203 (10%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+ E+F K G I N V N C+ L +++ V M KG D T+ LVN
Sbjct: 211 VYEDFVKSGNIVN-VYTLNIMVNALCKDGKL--DNVGVYLSEMEEKGVYADLVTYNTLVN 267
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A+C G + EA + ++ KG P + + ++N + K+GS E +++ +
Sbjct: 268 AYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSY---ERAKRVLDEMLG-- 322
Query: 190 ELGLCADVNT-NKISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQF 237
+GLC + T N + + + KE + EA R+ +++ G +F G+
Sbjct: 323 -VGLCPNAATFNPMLVESCRKE-DVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGEL 380
Query: 238 DDAFCFFSEMQIKTHPPNRPVYA 260
A +F +M+ P+ +Y
Sbjct: 381 GRALAYFEKMKGVGLVPDTVIYT 403
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 39 NLTLISE-LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
+L L+SE +W MK + T + II+ + + G + A + N +
Sbjct: 551 SLGLVSEAFRLWDE---MKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPP 607
Query: 98 CVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
+ YN+L FV+ M +G +P+ T+ ++ + G+M+EA+ L
Sbjct: 608 DCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVL 667
Query: 145 QELSDKGFNPPVRSAKQMVN----------------KMIKQGSVPD 174
++ DKG NP + ++N +M+++G VPD
Sbjct: 668 HKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 29/133 (21%)
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM----------------IKQ 169
+L+ + + K+RE E Q L +GF + + ++ + +K
Sbjct: 159 LLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKS 218
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G++ ++ T N ++ +CK G+L G+ AD+ T + A + ++ EA
Sbjct: 219 GNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEA 278
Query: 217 FRLLCNLVEDGHK 229
F L+ + G K
Sbjct: 279 FGLVDCMAGKGLK 291
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 31/155 (20%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S +FP + S++I F GL+ A ++++ + ++ N++ ++R
Sbjct: 532 SREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLS 591
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------- 156
MI +G PD T+ L+N++ A + + ++G P +
Sbjct: 592 KANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAIL 651
Query: 157 ---------RSAKQMVNKMIKQGSVPDLETFNSLI 182
+ A+ +++KMI +G PD T+ SLI
Sbjct: 652 GGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLI 686
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 24/206 (11%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
+FP TL+++I+ K G + NA+E+F K + V+ YN+L F +
Sbjct: 465 GLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTA 524
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
M+ K +P + +ILVNA CS G + EA E+ K P V M+
Sbjct: 525 KEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKG 584
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ G+ D E F +E + G + C NT I KE + +AF L+ + E
Sbjct: 585 YCRSGNASDGEIF---LEKMISEGFVPDCISYNT---LIYGFVKEENMSKAFGLVKKMEE 638
Query: 226 DGHKLFPSLGQFDD---AFCFFSEMQ 248
L P + ++ FC ++M+
Sbjct: 639 KQGGLVPDVFTYNSILHGFCRENQMK 664
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
KG PD T+ L++A+ S G M EA E + + KGF+P V +
Sbjct: 254 KGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYER 313
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
AK++ +M++ G PD T+ SL+ CK G+ V T I S++ + D
Sbjct: 314 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDA-----VETENIFSDMRSRDVVPD---- 364
Query: 219 LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
L+C LF G D A +F+ ++ P+ +Y
Sbjct: 365 LVC--FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 404
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LH-VC-----------FVRMIR 114
+++I+ + + G+I A+ + N+ C V+ YN+ LH +C F M
Sbjct: 404 TILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 463
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNP--PVRS 158
+G PD T TIL++ C G ++ A E +++ +K GF + +
Sbjct: 464 RGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDT 523
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
AK++ M+ + +P +F+ L+ +C G L
Sbjct: 524 AKEIWADMVSKEILPTPISFSILVNALCSKGHL 556
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 49/235 (20%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
V+P T + +I + GL++ A E+ + + V YN++ +C
Sbjct: 255 GVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERA 314
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-- 163
F M+R G PD T+ L+ C G E + ++ + P + M+
Sbjct: 315 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSL 374
Query: 164 --------------NKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
N + + G +PD + LI+ C+ G + G D
Sbjct: 375 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMD 434
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP---SLGQFDDAFCFFSEMQ 248
V T + + K M+ EA +L + E G LFP +L D C +Q
Sbjct: 435 VVTYNTILHGLCKRKMLGEADKLFNEMTERG--LFPDSYTLTILIDGHCKLGNLQ 487
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------R 157
R G + T I+VNA C GKM + FL E+ +KG P +
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLME 277
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A ++++ M +G P + T+N++I +CK G+
Sbjct: 278 EAFELMHAMPSKGFSPGVYTYNTVINGLCKHGK 310
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 21/164 (12%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F + KG+ L+ + G + A QE+S G V + MVN + K
Sbjct: 178 FTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCK 237
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G + + TF S ++ E G+ D+ T I A S + +++EAF L+ + G
Sbjct: 238 DGKMEKVGTFLSEVQ------EKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGF 291
Query: 229 KLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
P + G+++ A F+EM P+ Y
Sbjct: 292 S--PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 333
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 45/239 (18%)
Query: 34 TLNRLNLTLISELSMWKTIELMK-PDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKC 90
TLN L L E + EL++ P P +S ++ + K + A+ ++++
Sbjct: 458 TLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEM 517
Query: 91 TAFNCQQCVLLYNSL--HVCFV-----------RMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ + YN+L +C + +++KG VPD T+ I+++A+C G +
Sbjct: 518 SKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDL 577
Query: 138 REAQEFLQELSDKGFNPPVRSAKQMVN---------KMIK-------QGSVPDLETFNSL 181
+A +F ++ + F P V + ++N K IK +G D+ T+N+L
Sbjct: 578 EKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTL 637
Query: 182 IETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I+ +CK G++ GL D T + + A+S+ +EA +L L E G
Sbjct: 638 IQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 42/203 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T +++++ + G ++ A+ T V+ YN+L C R M
Sbjct: 388 THNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEM 447
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+R G D T L+ C + EA+E L+ +GF P S
Sbjct: 448 VRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKP 507
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A + ++M K+ P + T+N+LI+ +C G+L GL D T I
Sbjct: 508 EPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNII 567
Query: 204 IPAVSKEFMIDEAFRLLCNLVED 226
I A KE +++AF+ ++E+
Sbjct: 568 IHAYCKEGDLEKAFQFHNKMLEN 590
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 30/164 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRM 112
MK + ++ T + ++ + + G I A V TAF + + YN L +C
Sbjct: 271 MKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGK 330
Query: 113 IRKGF------------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
+ + F PD T+ LV+A + +A L+E+ DKG +
Sbjct: 331 VDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHN 390
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A + M ++G PD+ T+N+LI+ CK+
Sbjct: 391 IVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKA 434
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSA 159
G PD T+ L+ A C G + EA+ L + +G P ++ A
Sbjct: 240 GLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQA 299
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+V M G PDL T+N L +C++G++
Sbjct: 300 TNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 331
>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
gi|194705268|gb|ACF86718.1| unknown [Zea mays]
gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
Length = 504
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 104/267 (38%), Gaps = 53/267 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
+MW+ E M L V +T L+I K GL VE F + + FN + +N++
Sbjct: 197 AMWRLFEEMAAKGLPVSSRTFHLLICASVKVGLRRRLVERFIRSSTFNYRPFRNAFNAIL 256
Query: 107 VCFV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ +MI +G+ PD T+ +++ A GK+ + + L E+ G
Sbjct: 257 YTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVLRAKYMLGKLDQFHQLLDEMGKNGLT 316
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC--- 194
P + + A ++N M G P++ F +LI+ + ++G L C
Sbjct: 317 PDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLGRAGNLEACRYF 376
Query: 195 ----------ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPS 233
DV + I + +EA R +++ G + +
Sbjct: 377 FDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDMLMRGQLPNVYTYNSMIQGLCA 436
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+G+FD AF +M PN VY+
Sbjct: 437 VGEFDKAFTMLKDMDSHGCTPNFSVYS 463
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 58/261 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-CQQCVLLYNSLHVCF---- 109
M+ LS T++ ++E + GLID A VF++ + C + CF
Sbjct: 196 MQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGK 255
Query: 110 --------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
MI++GF+PD T T++++A C +G + A + +++ D GF P
Sbjct: 256 IQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTS 315
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--------LGLCA-- 195
++ A +M+ +M++ G P++ T +LI+ +CK G L L
Sbjct: 316 LIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD 375
Query: 196 ----DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFD 238
+V+T I KE ++ A L + E G LFP++ G FD
Sbjct: 376 IYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQG--LFPNVNTYTTLINGHCKAGNFD 433
Query: 239 DAFCFFSEMQIKTHPPNRPVY 259
A+ + M + PN Y
Sbjct: 434 RAYELMNLMDDEGFRPNIYTY 454
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F RM +G P+ T+T L+N C +G A E + + D+GF P + + +
Sbjct: 398 NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAV 457
Query: 163 VNKMIKQGSVP----------------DLETFNSLIETICKSGEL-------------GL 193
++ + K+ P D T+ LI+ CK ++ G
Sbjct: 458 IDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGF 517
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSL-------GQFDDAFC 242
AD+ N I I A ++ + E+ RL +V G + + S+ G FD A
Sbjct: 518 EADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALK 577
Query: 243 FFSEMQIKTHPPNRPVYA 260
+F M+ P+ Y
Sbjct: 578 YFHNMKRHGCVPDSFTYG 595
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 32/132 (24%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F RM + GF D R + IL+ A+C KM+E++ Q ++
Sbjct: 509 FCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQ-------------------LVVS 549
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G VP ET+ S+I CK G+ G D T I + K+ M+DE
Sbjct: 550 LGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDE 609
Query: 216 AFRLLCNLVEDG 227
A +L +++ G
Sbjct: 610 ACKLYEAMIDRG 621
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+E K I A+ F + + + L N L F R +
Sbjct: 488 TYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 547
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G VP K T+T +++ +C G A ++ + M + G V
Sbjct: 548 VSLGLVPTKETYTSMISGYCKEGDFDLALKYF-------------------HNMKRHGCV 588
Query: 173 PDLETFNSLIETICK 187
PD T+ SLI +CK
Sbjct: 589 PDSFTYGSLISGLCK 603
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R G VPD T+ L++ C + EA + + + D+G +PP + + + K
Sbjct: 579 FHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCK 638
Query: 169 QGSVPD-------------LETFNSLIETICKSGELGLCA 195
+ + T +L+ +C ++G+ A
Sbjct: 639 RNDSASAMIVLEPLDKKLWIRTVRTLVRKLCSEKKVGVAA 678
>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
Length = 567
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 77/190 (40%), Gaps = 44/190 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
MI KG PD T L+ C S KMR+A + ++ + G P
Sbjct: 88 MIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGN 147
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V A Q+V KM + G + T+NSL+ +C G L GL +V T
Sbjct: 148 VGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSF 207
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQI 249
+ A KE DEA RLL +V G K P+L G+ ++A FF ++
Sbjct: 208 LLEAAYKERGADEAIRLLDEIVAKGGK--PNLVSYNVLLTGLCKEGRTEEAMQFFRDLPS 265
Query: 250 KTHPPNRPVY 259
K PN Y
Sbjct: 266 KGFSPNVVSY 275
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 30/155 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRM 112
T +++I HG D A+EV + + + YN + C +M
Sbjct: 309 TFNILIGSLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVDLVVKCLDQM 368
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------GFNPPVRS-------- 158
+ + P++ T+ + C GK++EA +Q L +K F V S
Sbjct: 369 MYRRCNPNEGTYNAIA-VLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVISSLCRKGNT 427
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A Q++ +M K G VPD T++SLI +C G L
Sbjct: 428 YPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGML 462
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
++ KG P+ ++ +L+ C G+ EA +F ++L KGF+P V S
Sbjct: 228 IVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEGR 287
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
AK+++ +M P + TFN LI ++ G+
Sbjct: 288 WEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQ 322
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-------- 163
M + GFVPD T++ L+ CS G + EA E + + P V + ++
Sbjct: 437 MTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRK 496
Query: 164 --------NKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
M+K+G +P+ T+ ++E I E+ L A V
Sbjct: 497 TDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAV 538
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 29/169 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
K +ELM + P + + ++ K G + A+++ K + + YNSL +
Sbjct: 118 KVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGL 177
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C + ++KG VP+ T++ L+ A EA L E+ KG P +
Sbjct: 178 CMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNL 237
Query: 157 RSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSG 189
S ++ + K+G P++ ++N L+ ++C G
Sbjct: 238 VSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILLRSLCYEG 286
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 18/104 (17%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
PDS T S +I G++D A+E+F+ C+ V +N+L +C
Sbjct: 444 PDSY-----TYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTD 498
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
F M++KG++P++ T+TI+V +M A L+EL
Sbjct: 499 LSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVLKEL 542
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
V P T++ I++ K G + A + NC+ YN+L +
Sbjct: 291 GVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRA 350
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+ GFVPD T++IL + C G++ EA E ++E+S KG P + + +++
Sbjct: 351 KDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDG 410
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ K E L+E++ S G DV T I + + KE +D+A +++ +++
Sbjct: 411 LCKASKT---EKAYELLESLVSS---GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLK 464
Query: 226 DGHKLFPSL-------------GQFDDAFCFFSEM 247
G PS+ G+ D+A F EM
Sbjct: 465 RG--CTPSVITYTALMEGLCRTGRVDEAHHIFKEM 497
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 58/254 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PDS T L+I+ + ID A + +K + V +Y L F +
Sbjct: 158 PDSY-----TYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLK 212
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------- 156
+ R PD + +++ C A EFL+E++++ P V
Sbjct: 213 DALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLC 272
Query: 157 -----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------LGLCADVN------ 198
A +M+++M+ +G PD TFNS+++ +CK+G+ L + A+ N
Sbjct: 273 KASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCC 332
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFS 245
T I + K+ +D A L+ V G P + G+ D+AF
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEFVSSG--FVPDVVTYSILADGLCKRGRIDEAFELVK 390
Query: 246 EMQIKTHPPNRPVY 259
EM K PN Y
Sbjct: 391 EMSGKGCTPNLVTY 404
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 31/173 (17%)
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
++V+N C++ L + + F M +G VP+ +T+ I+++ C GK+ EA F
Sbjct: 538 IDVYNALMDGYCKEGRL--DEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 595
Query: 144 LQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
L+ + G P V + A+Q++++MI+ G PD T+N+L+ CK
Sbjct: 596 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 655
Query: 188 SGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G+ D T I +S+ + +A+ L+ ++ +G
Sbjct: 656 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 708
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++I++ K G +D A+++ C V+ Y +L H F M
Sbjct: 438 TYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 497
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-----------KGFNPPVR--SA 159
+ K D + LVN +C S + +EAQ+ + + G+ R
Sbjct: 498 VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEI 557
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
+ M +G VP+++T+N +++ +CK G++ G DV + I I
Sbjct: 558 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDG 617
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
+ K EA ++L +++ G
Sbjct: 618 LFKASKPKEARQVLDQMIQAG 638
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 43/199 (21%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T +++++ KHG +D A + C V+ YN + +
Sbjct: 574 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 633
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
MI+ G PD T+ L+ +C + +A L+ + G +P
Sbjct: 634 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 693
Query: 156 VRSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A +++++M++ G V T+N++I+ +CK G L G+ A+ T
Sbjct: 694 LGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYN 753
Query: 202 ISIPAVSKEFMIDEAFRLL 220
I I + KE +DEA LL
Sbjct: 754 IFIDRLCKEGRLDEASSLL 772
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC---- 108
E++ L + T +L+I+ F K +D A+ + C V+ YN + C
Sbjct: 806 EMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKL 865
Query: 109 ---------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
F M +G V ++T+L+ C G+ +EA + L+E++
Sbjct: 866 DKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMA 914
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 25/144 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F RM+ G+ PD T+ +++ + C ++ +A L + +GF P V + K
Sbjct: 148 FERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCK 207
Query: 169 QGSV------------PDLETFNSLIETICKS-------------GELGLCADVNTNKIS 203
G + PD +N++I C+ E + DV T I
Sbjct: 208 TGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNIL 267
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I + K D+A +L +V+ G
Sbjct: 268 IDGLCKASKTDKASEMLHEMVDRG 291
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 43/180 (23%)
Query: 112 MIRKGFVPDK-RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M+R G V T+ +++ C G +++A + ++ G + ++++ K+G
Sbjct: 704 MLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEG 763
Query: 171 -------------SVPDLETFNSLIETICKSGEL--------------GLCADVNTNKIS 203
++ D ++ ++I +CK+ +L GLC +T +
Sbjct: 764 RLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLL 823
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIK 250
I A +K +DEA LL +V+ G PS L + D A+ F EM ++
Sbjct: 824 IDAFTKTKRLDEALTLLGLMVQRGCS--PSVITYNMVITCLCKLDKVDKAWELFDEMAVR 881
>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 39/187 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC--------------FVR 111
+ S +I +G++G +AV++F ++ ++ YNSL F
Sbjct: 215 SFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDE 274
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +G VPD+ T+ L++ S G AQ+ L E+ KG
Sbjct: 275 MLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGI------------------- 315
Query: 172 VPDLETFNSLIETICKSGELGLCADV----NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V D T+N+ ++T+CK G++ L V ++ ++ V+ MID + NL+ED
Sbjct: 316 VRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAK--ANLLEDA 373
Query: 228 HKLFPSL 234
L+ +
Sbjct: 374 LNLYEEM 380
>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 42/215 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNA--VEVFNKCTAFNCQQCVL--LYNSLHVC-- 108
M+ L V + +I+ + K GLID A V+V + F L + + L
Sbjct: 97 MQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQ 156
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
+ MI KG VP+ ++T L++ +C G EA++ QE+ G P
Sbjct: 157 PEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNV 216
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
++ A ++ ++M +G PD+ T+ SL+ C G+L G
Sbjct: 217 LIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKG 276
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
L +V T I +SKE +EAF+L + E G
Sbjct: 277 LPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAG 311
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 57/237 (24%)
Query: 70 IIEEFGKHGLIDN----AVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
+ +E + GL+ N + C A + +L N + +G ++ +
Sbjct: 58 LFDELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQT-------RGLDVNQLIYN 110
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGF-----------------NPPVRSAKQMVNKMIK 168
L++ +C G + EA + + KGF N P AK+ + MI+
Sbjct: 111 TLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQP-EEAKRWLLTMIE 169
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G VP++ ++ +LI+ CK G G + T + I SK+ + E
Sbjct: 170 KGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKE 229
Query: 216 AFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
A+ L + G +FP + G+ DDA F+E++ K P N Y
Sbjct: 230 AYELRDEMRAKG--IFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTY 284
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 40/191 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KG D +T+++N C G + A EL++KG V + +++ + K
Sbjct: 24 FEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCK 83
Query: 169 QGS-------VPDLET---------FNSLIETICKSGEL-------------GLCADVNT 199
G V +++T +N+LI+ CK G + G D+ T
Sbjct: 84 AGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYT 143
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQ 248
+ K +EA R L ++E G ++ G F +A F EM+
Sbjct: 144 LNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMK 203
Query: 249 IKTHPPNRPVY 259
PN Y
Sbjct: 204 KAGGEPNAVTY 214
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M KG PD T+T L++ C GK+ +A E E+ KG V
Sbjct: 237 MRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGR 296
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A ++ ++M + G PD + SL+ ++ K+
Sbjct: 297 SEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 54/253 (21%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
SV+P T +++I K G D ++E++ + T ++ + Y+SL +C
Sbjct: 252 SVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGA 311
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-------------KGF 152
+ ++ V D TH ++N +C +GK++E+ E + KG
Sbjct: 312 VRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGL 371
Query: 153 --NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC------ADVNTNKISI 204
N V A + + K+G P+ T+ LI +CK+G L A+ K+
Sbjct: 372 FENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDA 431
Query: 205 PAVS-------KEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSE 246
A S KE +DEA ++ + + G+KL P + + +DA FF E
Sbjct: 432 YAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFRE 491
Query: 247 MQIKTHPPNRPVY 259
M+ K P Y
Sbjct: 492 MECKGCSPTIVSY 504
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----------FVR 111
P + +I F + +++A+ F + C ++ YN+L +C FV+
Sbjct: 466 PHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVK 525
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
M+ K + PD T ++L++ C K+ A Q+ DKGF P +
Sbjct: 526 EMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVC 585
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A Q+ + M + VP+L T N+L+E + K
Sbjct: 586 KLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYK 618
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 40/204 (19%)
Query: 19 NHIANIVRHDIYAERTLNRL--NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGK 76
+H A++ H L RL + L+S +S + ++++K +I+ + K
Sbjct: 41 SHSAHVFHH------ILRRLAADSRLVSHVS--RIVDIVKAQKCPCKEDVALTVIKAYAK 92
Query: 77 HGLIDNAVEVF-NKCTAFNCQQCVLLYNSLHVCFVRM--------IRKGF-----VPDKR 122
+ + + A++ F N F C+ V YN+L FV + + F P+ +
Sbjct: 93 NKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQ 152
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK-------------- 168
T+ IL+ C ++ +A L + + P V S ++N M+K
Sbjct: 153 TYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEM 212
Query: 169 --QGSVPDLETFNSLIETICKSGE 190
+G V D+ +N LI+ K G+
Sbjct: 213 SVRGVVADVTCYNMLIDGFFKHGD 236
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 86/218 (39%), Gaps = 57/218 (26%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116
P L + S +++ K G +D A+ + N+ M ++G
Sbjct: 426 PGKLDAY--AYSSMVDGLCKEGRMDEAISIVNQ----------------------MDKRG 461
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
+ D L+N + + K+ +A F +E+ KG +P + S A
Sbjct: 462 YKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAY 521
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR-- 218
V +M+++ PD+ T + L++ +C+ KI + + +D+ F+
Sbjct: 522 SFVKEMLEKEWKPDMITCSLLMDGLCQE-----------KKIEMALNLWQQALDKGFKPD 570
Query: 219 -LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ N++ G S+ + +DA +S M+ T PN
Sbjct: 571 ITMYNILMHG---LCSVCKLEDALQLYSHMKRSTCVPN 605
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 29/156 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
Q II K G ++A+ + +K + + V++YN++ +C F
Sbjct: 42 QPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTE 101
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M KG PD T++ +++++C SG+ +A++ L+++ ++ NP V + ++N ++K+G
Sbjct: 102 MHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGK 161
Query: 172 VPDLE----------------TFNSLIETICKSGEL 191
V + E T+NS+I+ CK L
Sbjct: 162 VSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRL 197
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 34/146 (23%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+FP T++ +I+ F K +++A + + + +C V+ +++L C
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNG 235
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
F M R+G V + T+T L++ +C G + AQ+ L N
Sbjct: 236 MEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLL-------------------NV 276
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL 191
MI G P+ TF S++ ++C EL
Sbjct: 277 MISSGVAPNYITFQSMLASLCSKKEL 302
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 31/168 (18%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
+FP T S +I+ F + G +A ++ V+ +++L V+
Sbjct: 106 GIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEA 165
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN- 164
M+R+G P T+ +++ +C ++ +A+ L ++ K +P V + ++N
Sbjct: 166 EEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLING 225
Query: 165 ---------------KMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+M ++G V + T+ +LI C+ G+L D+
Sbjct: 226 YCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDL 273
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------PVRSA 159
M+ G PD T T L+N C G++ +A + + ++G P SA
Sbjct: 1 MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+++KM + + +N++I+ +CK G
Sbjct: 61 LNLLSKMEETHIKAHVVIYNAIIDRLCKDG 90
>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 475
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 105/268 (39%), Gaps = 57/268 (21%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
+MW+ ++ M + +T +++I G GL VE F K FN + YN++
Sbjct: 172 AMWRLLDEMVENGFPTTARTFNILICTCGGAGLARKVVERFIKSKTFNYRPFKHSYNAIL 231
Query: 107 VCFV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ + +M+ +G+ PD T+ IL+ A GK+ L E+ GF+
Sbjct: 232 LSLLAIREYKLIEWVHQQMLVEGYCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSGFS 291
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------ 191
P + A +++N M + G P + F +LI+ + ++G L
Sbjct: 292 PDFHTYNILLHVLGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYF 351
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------- 234
G DV + I +++A + ++ G P++
Sbjct: 352 FDEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQ--LPNVFTYNSMIRGL 409
Query: 235 ---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+F++A C EM + PN VY
Sbjct: 410 CMAGKFEEARCMLKEMGSRGCKPNFLVY 437
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 29/148 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV---CFVR----------MIRKG 116
II+ K GL+++AVE+F++ + + YNSL C R M+ +
Sbjct: 121 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 180
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
VP+ T T +++ + GK EA + +E++ + +P V + AK
Sbjct: 181 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 240
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKS 188
QM++ M+ +G +PD+ T+N+LI CKS
Sbjct: 241 QMLDLMVTKGCLPDVVTYNTLINGFCKS 268
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 45/174 (25%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
+M++ G+ PD T + L+N +C ++ +A + + ++ + GF P
Sbjct: 70 KMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 129
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA---------DVNTNKISIP 205
V A ++ ++M + G D T+NSL+ +C SG A D+ N I+
Sbjct: 130 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 189
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
AV ID +F G+F +A + EM + P+ Y
Sbjct: 190 AV-----ID---------------VFVKEGKFSEAMKLYEEMTRRCVDPDVFTY 223
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 39/201 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I HG +D A ++ + C V+ YN+L C F M
Sbjct: 222 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 281
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------------FNPPVRSA 159
++G V D T+ ++ + +G+ AQE + + N V A
Sbjct: 282 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKA 341
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
+ M K D+ T+N +I +CK G + GL DV + I
Sbjct: 342 LVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG 401
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
++ D++ L + EDG
Sbjct: 402 FCRKRQWDKSDLLYRKMQEDG 422
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 64/244 (26%)
Query: 59 SLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116
SL++ P L+ L+I+ + GL+D A+EVF + NC
Sbjct: 163 SLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNC--------------------- 201
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD T++ L++ C ++ EA L E+ +G P + + A
Sbjct: 202 -APDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAA 260
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNK-----ISIPAVSKEF 211
++V+ M +G VP+ T+N+L+ +C G+L L + +NK ++ + F
Sbjct: 261 KLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGF 320
Query: 212 MI----DEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNR 256
++ + R+L +L GH+ ++ SL G+F+ A + EM K PN
Sbjct: 321 VMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNT 380
Query: 257 PVYA 260
VY+
Sbjct: 381 IVYS 384
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 26/142 (18%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ KG P+ ++ L++ C GK+ EA+ FL E+ +KG+ P + ++ + G
Sbjct: 371 MVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGD 430
Query: 172 ----------------VPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
+ + ++ LI +CK G+ L + + + I + V+
Sbjct: 431 SHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSS 490
Query: 212 MIDEAFRLLC--NLVEDGHKLF 231
MI C NLVE G KLF
Sbjct: 491 MIHG----FCNANLVEQGLKLF 508
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 53/243 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
+ S II+ F K G +D A +F++ V+ Y+SL M
Sbjct: 205 SYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHM 264
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG +P+ RT+ I++ +CS G++ EA L+++S G P V +
Sbjct: 265 FDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRC 324
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A+ + + M+++G P+ ++ L+ G L G+ + I
Sbjct: 325 AEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNIL 384
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTH 252
I A +K +D+A + ++G + + +G+ +DA F++M +
Sbjct: 385 ICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGL 444
Query: 253 PPN 255
PN
Sbjct: 445 SPN 447
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 46/246 (18%)
Query: 49 WKTIELMKPDSL--SVFPQT--LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
WK +E + + + + P ++ I++ K G + A + F+ + V+ YN+
Sbjct: 464 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNT 523
Query: 105 L--HVCFV-----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L CFV RM+ G PD T+ L+N + +G++ +A +E+ K
Sbjct: 524 LIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKD 583
Query: 152 FN----------------PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA 195
+ +A+++ KM+ +G+ +ET+N+++ +C++ C
Sbjct: 584 VKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENS----CV 639
Query: 196 DVNTNKISIPAVSKEFMIDE-AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
D ++ SKEF +D F ++ N + +G+ D+A FS M ++ P
Sbjct: 640 D-EALRMFEDLRSKEFELDVWTFNIVINAL-------LKVGRIDEAKSLFSAMVLRGPVP 691
Query: 255 NRPVYA 260
+ Y+
Sbjct: 692 HVITYS 697
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 80/169 (47%), Gaps = 29/169 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC-- 108
++LM D + + +++I + KHG +D A+ F + + V+ Y++ +H+
Sbjct: 366 LDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCK 425
Query: 109 ----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
F +M+ +G P+ + T L++ CS G+ ++ +E E+ ++G +P
Sbjct: 426 IGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIF 485
Query: 159 AKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL 191
+++ + K+G V P++ ++N+LI+ C G++
Sbjct: 486 MNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKM 534
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 40/223 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I K G ++ A+E F++ + + Y SL F + M
Sbjct: 345 TYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEM 404
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
IR GF P T+ L+N C SG+M EA L+ + KG +P V S
Sbjct: 405 IRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQEL 464
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A QM +M+++G PD T++SLI+ +C+ L D+ ++ + EF
Sbjct: 465 DRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSL 524
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C G ++A EM K P+ Y
Sbjct: 525 INGYC-----------KEGDLNEALNLHDEMIKKGFLPDTVTY 556
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 35/137 (25%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
M RKGF PD T+ LVN +C G +A E M++
Sbjct: 296 LAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSE-------------------MLR 336
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G PD+ T+ SLI T+CK+G L GL + T I S++ +DE
Sbjct: 337 NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDE 396
Query: 216 AFRLLCNLVEDGHKLFP 232
A+R+ ++ G FP
Sbjct: 397 AYRIWDEMIRSG---FP 410
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 47/167 (28%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F M+ K +PD+ T+T L+N +C G + EA E+ KGF P
Sbjct: 506 FQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNK 565
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
R AK+++ K+ S+P+ T+++LIE+ C+D+ S+ A+ K F
Sbjct: 566 QARTREAKRLLLKLFYDESIPNGITYDTLIES---------CSDIEFK--SVVALIKGFC 614
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G ++A F M + PN VY
Sbjct: 615 MK--------------------GLMNEADQVFESMIKRNQKPNEAVY 641
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 53/239 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ GK G ID+A +F K ++Y SL H + MIR+G
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRG 520
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK-------- 168
PD ++ +G++ + + +++ GF P VRS +++ + K
Sbjct: 521 GRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETS 580
Query: 169 --------QGSVPDLETFNSLIETICKSGELGLCAD-------------VNTNKISIPAV 207
QG D +N++++ +CKSG++ + V T + +
Sbjct: 581 NIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGL 640
Query: 208 SKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPN 255
+K +DEA+ L G +L F +G+ D+A+ EM K PN
Sbjct: 641 AKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 699
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRMIR 114
S +I+ FGK G ID A + + V +NSL +CF M
Sbjct: 669 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKE 728
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK------ 168
P+ T++IL+N C K +A F QE+ +G P V + M++ + K
Sbjct: 729 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITD 788
Query: 169 ----------QGSVPDLETFNSLIETICKS 188
G +PD +FN+LIE + +
Sbjct: 789 AYSLFERFKTNGGIPDSASFNALIEGMSNA 818
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 55/222 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------MIRKGF 117
+I +G D+A ++ + C V+ +NS+ C + +++K
Sbjct: 322 MIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDA 381
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET 177
P+ T+ I+++ C +G++ EA + E+ G P+L +
Sbjct: 382 KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGL-------------------FPNLLS 422
Query: 178 FNSLIETICKSGELGLCADV---------NTNKIS----IPAVSKEFMIDEAFRLLCNLV 224
N +++ +CK+ +L + N N ++ I + K+ ID+A+RL ++
Sbjct: 423 VNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKML 482
Query: 225 EDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPN 255
+ GH P + G+ +D + EM + P+
Sbjct: 483 DAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPD 524
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 102/246 (41%), Gaps = 62/246 (25%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF------------- 117
I+ FGK G +D A + F++ A + + Y S+ + R G
Sbjct: 253 IDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERD 312
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------AKQMVNK--- 165
VP + ++ + S+ + +A + L+ L ++G P V S K+ V++
Sbjct: 313 VPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALT 372
Query: 166 ---MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
++K+ + P++ T+N +I+ +C +G + GL ++ + I + + K
Sbjct: 373 LFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCK 432
Query: 210 EFMIDEAFRLL---------------CNLVED-GHKLFPSLGQFDDAFCFFSEMQIKTHP 253
++EA R+ C+L++ G K G+ DDA+ F +M H
Sbjct: 433 ANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKK-----GKIDDAYRLFEKMLDAGHD 487
Query: 254 PNRPVY 259
N +Y
Sbjct: 488 ANPIIY 493
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 45/221 (20%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
+ M ++ + + +++ K G +D A EV + + V Y S+
Sbjct: 584 QAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKI 643
Query: 106 ------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
++ F KG + ++ L++ + G++ EA L+E+ KG P V +
Sbjct: 644 DRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 703
Query: 160 KQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
+++ ++K + + L F S+ E C NT SI +I+
Sbjct: 704 NSLMDALVKTEEIDEALICFQSMKEMKCSP---------NTYTYSI-------LING--- 744
Query: 219 LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LC + +++ AF F+ EMQ + PN Y
Sbjct: 745 -LCR-----------VQKYNKAFVFWQEMQKQGLIPNVVTY 773
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 29/156 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
Q II K G ++A+ + +K + + V++YN++ +C F
Sbjct: 42 QPYGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTE 101
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M KG PD T++ +++++C SG+ +A++ L+++ ++ NP V + ++N ++K+G
Sbjct: 102 MHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGK 161
Query: 172 VPDLE----------------TFNSLIETICKSGEL 191
V + E T+NS+I+ CK L
Sbjct: 162 VSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRL 197
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 34/146 (23%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+FP T++ +I+ F K +++A + + + +C V+ +++L C
Sbjct: 176 GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNG 235
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
F M R+G V + T+T L++ +C G + AQ+ L N
Sbjct: 236 MEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLL-------------------NV 276
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL 191
MI G P+ TF S++ ++C EL
Sbjct: 277 MISSGVAPNYITFQSMLASLCSKKEL 302
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 31/168 (18%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
+FP T S +I+ F + G +A ++ V+ +++L V+
Sbjct: 106 GIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEA 165
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN- 164
M+R+G P T+ +++ +C ++ +A+ L ++ K +P V + ++N
Sbjct: 166 EEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLING 225
Query: 165 ---------------KMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+M ++G V + T+ +LI C+ G+L D+
Sbjct: 226 YCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDL 273
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------PVRSA 159
M+ G PD T T L+N C G++ +A + + ++G P SA
Sbjct: 1 MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+++KM + + +N++I+ +CK G
Sbjct: 61 LNLLSKMEETHIKAHVVIYNAIIDRLCKDG 90
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 56/247 (22%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ +M D P +S +I+ K G D A + + V++Y+S+
Sbjct: 184 LHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAAL 243
Query: 110 V-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
RM++ G P+ T+T LV+ +CSSG++ EA +FL+++ G P V
Sbjct: 244 CKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNV 303
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
+ A+++ + M+K+G PD+ T++SL+ G L V +
Sbjct: 304 VTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGAL-----VEMH 358
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------GQFDDAFCFFSEMQIKTHP 253
+ V + D H +F +L G+ D+A FS+M+ +
Sbjct: 359 GLFDLMVQSDMQPD-------------HYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLK 405
Query: 254 PNRPVYA 260
PN Y+
Sbjct: 406 PNCVTYS 412
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 21/168 (12%)
Query: 109 FVRMIRKG---FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
F RM R G P T+ IL+ CS+G++ L + KGF R + N
Sbjct: 75 FNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGF----RVEPIIFNP 130
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
++K G D T +++ + EL +V ++ I + + E EA LL + +
Sbjct: 131 LLK-GLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMAD 189
Query: 226 DGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
DG P++ G D A+ + EM + PN +Y+
Sbjct: 190 DGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYS 237
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 29/176 (16%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + M VP+ +HTI++ C + +EA E L ++D G P V S
Sbjct: 143 DAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYS 202
Query: 161 QMVNKMIKQGS----------------VPDLETFNSLIETICKSGELGLCADVNTNKISI 204
+++ ++K G +P++ ++S+I +CK + +V+ +
Sbjct: 203 TVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKN 262
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
F C S GQ +A F +M PN Y+
Sbjct: 263 GVTPNCFTYTSLVHGFC-----------SSGQLTEAIKFLEKMCSNGVEPNVVTYS 307
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 77 HGLIDNAVE--------VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
HGL D V+ VFN + +Q + + + F +M ++G P+ T++ L+
Sbjct: 358 HGLFDLMVQSDMQPDHYVFNTLIYASAKQGKV--DEAMLVFSKMRQQGLKPNCVTYSTLI 415
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
N +C +M A QE+ G +P + M+ + + G + F
Sbjct: 416 NGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEF 465
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 95/241 (39%), Gaps = 38/241 (15%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
+WK M+ + T S +E K D A +VF + +C + YN +
Sbjct: 229 VWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMIS 288
Query: 108 CFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
R M+ G PD T+ L+N C G+++EA+ L E+S G P
Sbjct: 289 GLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKP 348
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS----IPAVSKE 210
V +V+ +K+G E F+ L E I A V NKI I + K
Sbjct: 349 NVVVYATLVDGFMKEGKAA--EAFDILNEMI--------SAGVQPNKIMYDNLIRGLCKI 398
Query: 211 FMIDEAFRLLCNLVEDGHK-----LFPSL-GQF-----DDAFCFFSEMQIKTHPPNRPVY 259
+ A +LL +++ GH+ P + G F D AF +EM+ PN Y
Sbjct: 399 GQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTY 458
Query: 260 A 260
Sbjct: 459 G 459
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
E +KP++ P LII K G I A E T N + YNSL
Sbjct: 484 EGLKPNAFMYAP----LIIGH-SKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTV 538
Query: 106 ------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
+ ++ ++G VPD+ T++ L++ +C + + +A + LQ++ + G P +
Sbjct: 539 GRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTY 598
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++ K D E +S+++++ SG+ D + I I +S+ ++ AF +
Sbjct: 599 TDLLEGYFKSN---DHEKVSSILQSMLGSGDK---PDNHIYGIVIRNLSRSENMEVAFMV 652
Query: 220 LCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
L + ++G L P L + C ++M+
Sbjct: 653 LTEVEKNG--LVPDLHIYSSLISGLCKMADME 682
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M G +P+ T+ I++N C +G+ +EA L+E+ +G P
Sbjct: 446 MRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGH 505
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+ A + + M K +PDL +NSLI+ + G + GL D T
Sbjct: 506 ISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSG 565
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK 229
I K +++A +LL ++ G K
Sbjct: 566 LIHGYCKTRNLEKADQLLQQMLNSGLK 592
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 34/165 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+ PD+ T ++ K G + A + ++ + + V++Y +L F++
Sbjct: 311 LSPDAF-----TYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGK 365
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
MI G P+K + L+ C G++ A + L E+ G P
Sbjct: 366 AAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHP 425
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++N+M G +P+ T+ +I +C++GE
Sbjct: 426 LMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGE 470
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 41/212 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIR 114
S +I K ++ AV + ++ + ++ YN+L F R ++
Sbjct: 669 SSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 728
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
KG +P+ T+T L++ C +G + +A + +++ D+G P +
Sbjct: 729 KGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQ 788
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
A + +M +G + F++L+ CK G L T K+ M+D
Sbjct: 789 ALFLTEEMFNRGYA-HVSLFSTLVRGFCKRGRL-----QETEKL------LHVMMDREIV 836
Query: 219 LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250
VE+ F G+ +A F+E+Q K
Sbjct: 837 PNAQTVENVITEFGKAGKLCEAHRVFAELQQK 868
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 42/224 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +I F K+G++ A+++F+ + +YN L + + M
Sbjct: 368 TYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------R 157
R+G VPD T+ L+ C +G + A++ +L++KG V R
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESR 487
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217
A ++ +M K G P T+N +++ CK G L ++ T +++
Sbjct: 488 KAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQ------------MEKER 535
Query: 218 RLLCNLVEDGHKL--FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
RL N+ L + G+ +DA +EM K PNR Y
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RM 112
T +++I+ F K + +++VF + + V+ YNSL +C +M
Sbjct: 298 TFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKM 357
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+ G P+ T+ L+N +C +G M+EA + + +G P R +++
Sbjct: 358 VSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKI 417
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL 191
+M ++G VPD+ T+N LI +C++G +
Sbjct: 418 DDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 78/229 (34%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA--------- 159
+ MIR+ P+ T +++NA C +GKM +A++ ++++ G++P V S
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCK 270
Query: 160 --------------KQMV-------------------------------NKMIKQGSVPD 174
K+MV +M+ Q +P+
Sbjct: 271 LGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPN 330
Query: 175 LETFNSLIETICKSGELG---------LCADVNTNKIS----IPAVSKEFMIDEAFRLLC 221
+ T+NSLI +C G++ + A V N I+ I K M+ EA +
Sbjct: 331 VITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFD 390
Query: 222 NLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ G + + LG+ DD F EM+ + P+ Y
Sbjct: 391 SVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M L+V Q + II+ KHG I AVE C+ ++ YN+L R
Sbjct: 281 MNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGK 340
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ KG +P+K ++T L++A+C G A +L E++++G P + +
Sbjct: 341 VSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGA 400
Query: 162 MVN----------------KMIKQGSVPDLETFNSLIETICKSGEL 191
+V+ KM+++G PD +N L+ +CK +L
Sbjct: 401 LVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKL 446
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 42/218 (19%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------- 105
L+K + + + ++++ K G ++ ++ C ++ YN+L
Sbjct: 175 LVKLGRIEIARKFTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKG 234
Query: 106 -----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR--- 157
+ F+ + KGF+P T+ ++N +C G + L E++ +G V+
Sbjct: 235 DMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYN 294
Query: 158 -------------SAKQMVNKMIKQGSVPDLETFNSLIETICKSG---------ELGLCA 195
A + + MI+ G PD+ T+N+LI C+ G E L
Sbjct: 295 TIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGK 354
Query: 196 DVNTNKIS----IPAVSKEFMIDEAFRLLCNLVEDGHK 229
+ NK S I A K+ D A L + E GHK
Sbjct: 355 GLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHK 392
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
M+ + +PD + LV+ + +G + EA++ + +KG NP +
Sbjct: 453 LAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCK 512
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A +N+M K+ PD T++++I+ K +L
Sbjct: 513 FGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDL 551
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 61/241 (25%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
KPDS+ T + +++ GK G +D+A+E+ ++ + V+ YN+L F +
Sbjct: 216 KPDSI-----TFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDL 270
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
M R G PD T++ L+ + ++ EA Q+
Sbjct: 271 VEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEAC-------------------QV 311
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+ KM K+G PD T+N+LI + K+G L G DV T I A+ K
Sbjct: 312 LKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGK 371
Query: 210 EFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
++ A L + G + + GQ DDA FSEM+ K P+
Sbjct: 372 AARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVIT 431
Query: 259 Y 259
Y
Sbjct: 432 Y 432
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 32/220 (14%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRM 112
T + +I GK G A+E+ + C V+ Y+SL F M
Sbjct: 151 TYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEM 210
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R+G PD T T L++A +G++ +A E L E+ ++G P V + ++ G V
Sbjct: 211 KRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGF---GKV 267
Query: 173 PDLETFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG---- 227
DL +L++ + ++G C DV T I + K +DEA ++L + ++G
Sbjct: 268 GDLVEAYNLLDEMKRNG----CKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPD 323
Query: 228 ----HKLFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVYA 260
+ L LG+ +DA F M+ K P+ Y+
Sbjct: 324 TITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYS 363
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +++ GK G D A+ + + C V YN L F M
Sbjct: 81 TYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEM 140
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+G VPD T+ L+ G+ ++A E L+E+ G P V +
Sbjct: 141 RERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGET 200
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
A ++ +M ++G PD TF +L++ + K+G E G+ V T
Sbjct: 201 VKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNAL 260
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTH 252
I K + EA+ LL + +G K L L Q D+A +M+ +
Sbjct: 261 IAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGC 320
Query: 253 PPNRPVY 259
PP+ Y
Sbjct: 321 PPDTITY 327
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 53/235 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRM 112
T S +I GK +++A +F + + Q + Y S+ F M
Sbjct: 361 TYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEM 420
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG PD T+ +N+ G+ +EA++ +++ + G P V +
Sbjct: 421 RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEV 480
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A ++ ++I+QG D F+ +E + G + GL ++
Sbjct: 481 DDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNAL 540
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEM 247
I A++K + EAF L +L E G K L +L GQ D AF EM
Sbjct: 541 IDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 44/215 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVCFV--RM 112
T + +I FGK G + A + ++ C+ V+ Y+ L C V +M
Sbjct: 256 TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKM 315
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
++G PD T+ L+N +G + +A + KG NP V + ++ + K V
Sbjct: 316 EKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARV 375
Query: 173 ----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
PDL T+ S+I + K+G++ GL DV T
Sbjct: 376 ESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAF 435
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
+ ++ + EA ++ ++ E G L P + +D
Sbjct: 436 LNSLGRGGRFKEARKIFEDMKESG--LLPDVATYD 468
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 41/187 (21%)
Query: 115 KGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
KGF P+ T+ L+NA +G+ EAQ +EL + P V S
Sbjct: 2 KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A ++V +M +G P+L T+N+L++ + K+G+ G DV T I
Sbjct: 62 AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI 121
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSLGQF---DDAFCFFSEMQIKTHP 253
+ K + EAF L + E G + L LG+ A EM+ P
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCP 181
Query: 254 PNRPVYA 260
P+ Y+
Sbjct: 182 PDVMTYS 188
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M L+V Q + II+ KHG I AVE C+ ++ YN+L R
Sbjct: 300 MNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGK 359
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ KG +P+K ++T L++A+C G A +L E++++G P + +
Sbjct: 360 VSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGA 419
Query: 162 MVN----------------KMIKQGSVPDLETFNSLIETICKSGEL 191
+V+ KM+++G PD +N L+ +CK +L
Sbjct: 420 LVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKL 465
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 34/190 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL-LYNSLHVCFVRMIRKGFVPDKRTHTILV 128
+IE+ G I N + +N C++ + + N L F+ + KGF+P T+ ++
Sbjct: 226 LIEDRWGQGCIPNII-FYNTLIDGYCKKGDMEMANGL---FIELKLKGFLPTVETYGAII 281
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNKMIKQGSV 172
N +C G + L E++ +G V+ A + + MI+ G
Sbjct: 282 NGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCK 341
Query: 173 PDLETFNSLIETICKSG---------ELGLCADVNTNKIS----IPAVSKEFMIDEAFRL 219
PD+ T+N+LI C+ G E L + NK S I A K+ D A
Sbjct: 342 PDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNW 401
Query: 220 LCNLVEDGHK 229
L + E GHK
Sbjct: 402 LIEMTERGHK 411
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 32/151 (21%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
I MK L+ T S +I+ + K +D A ++F + C+ V+ Y SL F R
Sbjct: 542 INRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCR 601
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
M G VP+ T++IL+ ++C K+ +A F +E+
Sbjct: 602 KGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEM----------- 650
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
++NK VP+ TFN L+ K+G
Sbjct: 651 ---LMNK-----CVPNDVTFNYLVNGFSKNG 673
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 47/229 (20%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVE----VFNKCTAF-NCQQCVLLY 102
M +E M+ + +S + +S++I+ + GL++ A+E V T F + C L
Sbjct: 113 MEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLL 172
Query: 103 NSL-HVCFVRMIRKGF------------VPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
N L + + + RK + D + I+V C GK+ E ++ +++
Sbjct: 173 NMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWG 232
Query: 150 KGFNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSGEL-- 191
+G P + +++ K+G +P +ET+ ++I CK G+
Sbjct: 233 QGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKA 292
Query: 192 -----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
GL +V I A K I +A + ++E G K
Sbjct: 293 IDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCK 341
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 48/185 (25%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------- 105
SV P + +++ F ++G +D A ++F ++ YN++
Sbjct: 479 SVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDA 538
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
C RM ++ PD+ T++ +++ + + AQ+ +E
Sbjct: 539 MACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFRE------------------- 579
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEF- 211
M+K P++ T+ SLI C+ G+L GL +V T I I + KE
Sbjct: 580 MVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAK 639
Query: 212 MIDEA 216
+ID A
Sbjct: 640 LIDAA 644
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
M+ + +PD + LV+ + +G + EA++ + +KG NP +
Sbjct: 472 LAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCK 531
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A +N+M K+ PD T++++I+ K +L
Sbjct: 532 FGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDL 570
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 34/160 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ KG P+ T T+ + +C G + EA+ +++ KG P
Sbjct: 453 MVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEK 512
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V+ A ++ ++MI +G +PDL T++SLI C G + G+ +V T
Sbjct: 513 VKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTS 572
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSL-GQF 237
I +SKE DEAF+L +++ G ++F SL G F
Sbjct: 573 MISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 111/261 (42%), Gaps = 30/261 (11%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDN 82
IV+ +++ TL + + + ++LM+ + + T S++I+ + G I+
Sbjct: 246 GIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEE 305
Query: 83 AVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVN 129
A ++F + N + V +Y+S+ F M ++ VP+ T+ L+
Sbjct: 306 AEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIG 365
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
C +G+M A+ L E+ KG + + ++ ++G + + +++E
Sbjct: 366 GVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIME------ 419
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFD 238
+ G+ ADV T I + K DEA +L ++VE G K ++ G
Sbjct: 420 KKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLA 479
Query: 239 DAFCFFSEMQIKTHPPNRPVY 259
+A F +M+ K PN Y
Sbjct: 480 EAERLFRDMEKKGEVPNIITY 500
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +KG D T+ IL N C + EA+ L + +KG P V +
Sbjct: 418 MEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGN 477
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A+++ M K+G VP++ T+N+LI+ CK ++ +KI ++K + D
Sbjct: 478 LAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVK-----QAHKIKSEMINKGLLPD- 531
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+L+ G + +G+ D+A F+EM++K N Y
Sbjct: 532 -LYTYSSLIH-GECI---VGRVDEALKLFNEMRLKGITRNVATYT 571
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++ IE + K G + A +F ++ YN+L H M
Sbjct: 464 TFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEM 523
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--------- 163
I KG +PD T++ L++ C G++ EA + E+ KG V + M+
Sbjct: 524 INKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRA 583
Query: 164 -------NKMIKQGSVPDLETFNSLIETICK 187
++M+K G +PD F SL+ + K
Sbjct: 584 DEAFKLYDEMMKIGLIPDDRVFTSLVGSFHK 614
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + ++ F + GL A F+K F+ + YN+L + + M
Sbjct: 246 TFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTM 305
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
R G PD +H IL+NA+ +G +A++ + + GF+P ++S
Sbjct: 306 QRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRV 365
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A+++V+ M + G+ PD +NSLI SG
Sbjct: 366 EEAEELVSAMERDGTKPDTLIYNSLINAYGVSG 398
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 56/199 (28%)
Query: 63 FPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120
FP T+S ++I +G+ GL ++A ++F M GF P+
Sbjct: 311 FPDTVSHNILINAYGRAGLYEDAEKIFKS----------------------MQSAGFSPN 348
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---------------- 164
+++ +L++A+ +G++ EA+E + + G P ++N
Sbjct: 349 LKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLA 408
Query: 165 KMIKQGS---VPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVS 208
KM+K S PD+ T+N+LI+ ++G L L D T + +
Sbjct: 409 KMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYA 468
Query: 209 KEFMIDEAFRLLCNLVEDG 227
K+ + + +L ++E G
Sbjct: 469 KKKLYRKCTSILKKMLESG 487
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 38/139 (27%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
+L+I+ +GK I++A + FN+ C VP++ T +L
Sbjct: 108 NLLIDAYGKSLNIEDAEKTFNRMQEALC----------------------VPNEETFGVL 145
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGS 171
+N + +G +A+E ++ +G++P R A+ + + K
Sbjct: 146 INGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYEC 205
Query: 172 VPDLETFNSLIETICKSGE 190
P+++T+N +I K+GE
Sbjct: 206 EPNIDTYNRMIVIYGKAGE 224
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 42/189 (22%)
Query: 83 AVEVFNKCTAFNCQQCVLLYNSLHVCF------------VRMIRKGFVPDKR-THTILVN 129
A +F + C+ + YN + V + R +R+ P T T L+N
Sbjct: 193 AEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMN 252
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
A+ G REA+ + +L + + P A ++ M + G P
Sbjct: 253 AFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFP 312
Query: 174 DLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
D + N LI ++G G ++ +N + + A ++ ++EA L+
Sbjct: 313 DTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELV 372
Query: 221 CNLVEDGHK 229
+ DG K
Sbjct: 373 SAMERDGTK 381
>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
Length = 800
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 62/223 (27%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTH 124
G + A+ ++N+ A C YN L +C F MI +G P+ +TH
Sbjct: 190 GAVPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTH 249
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIET 184
TIL+++ C++G+++EA+ L + DK G PD T+N+ +
Sbjct: 250 TILLSSMCNAGQLKEAENLLHSMEDK-------------------GCPPDEVTYNAFLSG 290
Query: 185 ICKSGELG-----LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF-------- 231
+CK+G + L A +T + +ID F L E+G + +
Sbjct: 291 LCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLF--LAGRYEEGFQCYMEVLEQAD 348
Query: 232 --PSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
P + G+ +DAF FF EM+ K P+ Y
Sbjct: 349 VSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCY 391
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 108 CFVRMIRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
C++ ++ + V PD +TI++ +G+ +A F E+ +KGF P ++ +
Sbjct: 339 CYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKAL 398
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
G DL+ SL+ + ++ + D++T I + KE ++DEA ++ +VE
Sbjct: 399 CDAG---DLDGARSLMSEMVRN---NVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEV 452
Query: 227 G 227
G
Sbjct: 453 G 453
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 64/225 (28%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
T + +I K L+D A++VF+ C V+ YN L + F +
Sbjct: 424 HTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYK 483
Query: 112 M-------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
M + V D T LV + C SG++ +A + L+ + D G
Sbjct: 484 MEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGV------ 537
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICK----SGELGLCADVNTNKISIPAVSKEFMID 214
VPD+ T+N+L+ +CK G L L ++ + ++ +ID
Sbjct: 538 -------------VPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLID 584
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
R H+ ++DA F ++ P+ P+Y
Sbjct: 585 SLLR--------AHR-------YNDALTLFQDILHSGGTPSMPIY 614
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KGF PD + L+ A C +G + A+ + E+ + + M+ + K
Sbjct: 376 FDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCK 435
Query: 169 QGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ V + ++ F+ ++E C V T + I + + ++EA R+L +E G
Sbjct: 436 EQLVDEAMQVFDGMVEVGCHP-------SVMTYNVLIDGLYRAHRLEEA-RMLFYKMEVG 487
Query: 228 HKLFPSL 234
+ PSL
Sbjct: 488 NN--PSL 492
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 63/253 (24%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW+TI+ M SV P S I++ GK +++ A+ VF + C +YN+L
Sbjct: 143 MWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLIL 202
Query: 106 -----------HVCFVRMIRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H + + +G PD T++ L++A+ + A E+ + G +
Sbjct: 203 MLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLH 262
Query: 154 P----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P V +A ++V +M +G P + T+ LI+ + K G
Sbjct: 263 PTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGR------- 315
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSE 246
+D+A+ L N+++DG K + G+ +DA F +
Sbjct: 316 ---------------VDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGK 360
Query: 247 MQIKTHPPNRPVY 259
M PN Y
Sbjct: 361 MDSLQCAPNVVTY 373
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 47/203 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVRMIRK 115
+I G+ G +++A+++F K + C V+ YN++ + F +M
Sbjct: 341 LINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-PV------------------ 156
G P T+ IL++ +C + ++ +A L+E+ +KGF P P
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAA 460
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISI 204
RS+ ++ MIK + + ++ C+ +LG DV T +
Sbjct: 461 NELFQELKENCGRSSARVYAVMIKH--FGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALM 518
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG 227
+ + MIDEA L+ N+ E+G
Sbjct: 519 SGMIRAGMIDEAHSLMRNMRENG 541
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+ +++I+ FG G + +AV++F + C V YN+L +R
Sbjct: 477 RVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRN 536
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M G PD ++H I++N +G + A E ++ + P S
Sbjct: 537 MRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGM 596
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++ +M +G D T++S++E + K E
Sbjct: 597 FEMAAKLMREMKLKGFEYDSITYSSILEAVGKVDE 631
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ MI KG PD T+T L++ +C GKM+EA L E+ K NP V + +++ + K
Sbjct: 221 YSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGK 280
Query: 169 QGS-------------------VPDLETFNSLIETICKSGEL 191
+G +PD+ T+NSLI+ +CK+ L
Sbjct: 281 EGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHL 322
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 22/178 (12%)
Query: 66 TLSLIIEEFGKHG---LIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------F 109
T S++I+ GK G ++D A+ +F + N ++ YNSL +C
Sbjct: 270 TFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALL 329
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M G PD ++TIL++ C G++ A+EF Q L KG + V M+N + K
Sbjct: 330 KEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKA 389
Query: 170 GSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G F ++ K G + T + I A+S++ D+A ++L ++ G
Sbjct: 390 G------LFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARG 441
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 42/181 (23%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV------------ 163
G PD T +IL+N +C + A + +GF+P + ++
Sbjct: 88 GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKT 147
Query: 164 ----NKMIKQGSVPDLETFNSLIETICKSGELGLCA-------------DVNTNKISIPA 206
++++ QG D ++ +LI +CK+GE A DV I +
Sbjct: 148 LYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINS 207
Query: 207 VSKEFMIDEAFRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPP 254
+ K ++ +A + ++ G H F +G+ +AF +EM++K P
Sbjct: 208 LCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHG-FCIMGKMKEAFSLLNEMKLKNINP 266
Query: 255 N 255
+
Sbjct: 267 D 267
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 34/165 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+KPD T + II K G++D A E+ C+ V+ YN L
Sbjct: 255 LKPDMF-----TYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGK 309
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
+M + P+ T++IL+ C GK+ EA L+ + +KG P S
Sbjct: 310 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 369
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A + + MI G +PD+ +N+++ T+CK+G+
Sbjct: 370 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 414
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 38/129 (29%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RM K F PD T+ I++ + CS GK+ A + L +L P V +
Sbjct: 179 RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEG 238
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +++++M+ +G PD+ T+N++I +CK G M+D
Sbjct: 239 GVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEG----------------------MVD 276
Query: 215 EAFRLLCNL 223
AF ++ NL
Sbjct: 277 RAFEMIRNL 285
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 62/234 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++IE G +D A+++ ++ M+ +G PD T+
Sbjct: 226 TYTILIEATMLEGGVDEALKLLDE----------------------MLSRGLKPDMFTYN 263
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++ C G + A E ++ L KG P V S ++++ KM +
Sbjct: 264 TIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 323
Query: 170 GSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEA 216
P++ T++ LI T+C+ G E GL D + I A +E +D A
Sbjct: 324 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 383
Query: 217 FRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
L ++ DG + + +L G+ D A F ++ PN Y
Sbjct: 384 IEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY 437
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 43/189 (22%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNS--------------LHVCFVRMIRKGFVPDK 121
K+G D A+E+F K C YN+ LH+ + M+ G PD+
Sbjct: 411 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM-ILEMVSNGIDPDE 469
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
T+ +++ C G + +A E L ++ F+P V A +++
Sbjct: 470 ITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDS 529
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
M+ G P+ T+ LIE I +G ++ + + I A+S + +F+ L
Sbjct: 530 MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAIS-----EYSFKRL----- 579
Query: 226 DGHKLFPSL 234
H+ FP L
Sbjct: 580 --HRTFPLL 586
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 60/188 (31%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
++LMK L+ + +I F + G +D A+E
Sbjct: 352 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET---------------------- 389
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MI G +PD + ++ C +GK +A E +L + G +P S
Sbjct: 390 MISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGD 449
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A M+ +M+ G PD T+NS+I +C+ G M+D+
Sbjct: 450 KIRALHMILEMVSNGIDPDEITYNSMISCLCREG----------------------MVDK 487
Query: 216 AFRLLCNL 223
AF LL ++
Sbjct: 488 AFELLVDM 495
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 46/198 (23%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
SLH+ M+RKG+ PD T L+ + + + +A ++ L G P V + ++
Sbjct: 104 SLHL-LETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALI 161
Query: 164 NKMIKQGSV----------------PDLETFNSLIETICKSGELGLC------------- 194
N K + PD T+N +I ++C G+L L
Sbjct: 162 NGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQ 221
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAF 241
V T I I A E +DEA +LL ++ G K P + G D AF
Sbjct: 222 PTVITYTILIEATMLEGGVDEALKLLDEMLSRGLK--PDMFTYNTIIRGMCKEGMVDRAF 279
Query: 242 CFFSEMQIKTHPPNRPVY 259
+++K P+ Y
Sbjct: 280 EMIRNLELKGCEPDVISY 297
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 48/227 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ S +I F G +D+A + ++Y + F R M
Sbjct: 299 SFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEM 358
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ G +PD T+ L+N C ++ +A+E L E+ ++G P +
Sbjct: 359 VGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNF 418
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKEFM 212
A Q+ + ++ Q PD+ +NSLI+ +C+ G+L L D++ +I V+ +
Sbjct: 419 EKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSIL 478
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
ID C GQ ++AF F EM K + PN Y
Sbjct: 479 IDSH----C-----------EKGQVEEAFGFLDEMVSKGNLPNIMTY 510
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 46/226 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG--------- 116
T + +I + + G + A+++F+ + V+ YNSL M RKG
Sbjct: 404 TFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSL---IDGMCRKGDLAKANELW 460
Query: 117 -------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------------- 154
P+ T++IL+++ C G++ EA FL E+ KG P
Sbjct: 461 DDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRS 520
Query: 155 -PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
V+ +Q + KM++ +PDL TFN+LI K E + N I + KE +
Sbjct: 521 GNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIK--EENMHGAFNVFNI----MEKEMVQ 574
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+A + N++ +G F G ++A F +M P+R Y
Sbjct: 575 PDA--VTYNMIING---FSEQGNMEEAGRVFKKMGASGIEPDRYTY 615
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 51/232 (21%)
Query: 47 SMWKTIELMKPDSL-------SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
S K++E K D++ VFP T +++I+ + G +D A+ + + +
Sbjct: 166 SYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKP 225
Query: 98 CVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
++ +NS+ +C F M + PD R+ IL+ +C G++ EA +F
Sbjct: 226 GIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFY 285
Query: 145 QELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+E+ +G P V S A + +M G VPD + +I C++
Sbjct: 286 KEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRA 345
Query: 189 GE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G LG DV T + + K+ + +A LL + E G
Sbjct: 346 GSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERG 397
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 29/148 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV---CFVR----------MIRKG 116
II+ K GL+++AVE+F++ + + YNSL C R M+ +
Sbjct: 180 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 239
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
VP+ T T +++ + GK EA + +E++ + +P V + AK
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 299
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKS 188
QM++ M+ +G +PD+ T+N+LI CKS
Sbjct: 300 QMLDLMVTKGCLPDVVTYNTLINGFCKS 327
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
+M++ G+ PD T + L+N +C ++ +A + + ++ + GF P
Sbjct: 129 KMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA---------DVNTNKISIP 205
V A ++ ++M + G D T+NSL+ +C SG A D+ N I+
Sbjct: 189 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 248
Query: 206 AVSKEFMIDEAFRLLCNLVED 226
AV F+ + F L E+
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEE 269
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 39/201 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I HG +D A ++ + C V+ YN+L C F M
Sbjct: 281 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 340
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------------FNPPVRSA 159
++G V D T+ ++ + +G+ AQE + + N V A
Sbjct: 341 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKA 400
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
+ M K D+ T+N +I +CK G + GL DV + I
Sbjct: 401 LVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG 460
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
++ D++ L + EDG
Sbjct: 461 FCRKRQWDKSDLLYRKMQEDG 481
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 63/253 (24%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW+TI+ M SV P S I++ GK +++ A+ VF + C +YN+L
Sbjct: 143 MWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLIL 202
Query: 106 -----------HVCFVRMIRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H + + +G PD T++ L++A+ + A E+ + G +
Sbjct: 203 MLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLH 262
Query: 154 P----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P V +A ++V +M +G P + T+ LI+ + K G
Sbjct: 263 PTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGR------- 315
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSE 246
+D+A+ L N+++DG K + G+ +DA F +
Sbjct: 316 ---------------VDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGK 360
Query: 247 MQIKTHPPNRPVY 259
M PN Y
Sbjct: 361 MDSLQCAPNVVTY 373
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 47/203 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVRMIRK 115
+I G+ G +++A+++F K + C V+ YN++ + F +M
Sbjct: 341 LINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-PV------------------ 156
G P T+ IL++ +C + ++ +A L+E+ +KGF P P
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAA 460
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISI 204
RS+ ++ MIK + + ++ C+ +LG DV T +
Sbjct: 461 NELFQELKENCGRSSARVYAVMIKH--FGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALM 518
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG 227
+ + MIDEA L+ N+ E+G
Sbjct: 519 SGMIRAGMIDEAHSLMRNMRENG 541
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+ +++I+ FG G + +AV++F + C V YN+L +R
Sbjct: 477 RVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRN 536
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M G PD ++H I++N +G + A E ++ + P S
Sbjct: 537 MRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGM 596
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++ +M +G D T++S++E + K E
Sbjct: 597 FEMAAKLMREMKLKGFEYDSITYSSILEAVGKVDE 631
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 32/225 (14%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM------ 112
V P T++ I++ K G + A + NC+ YN+L +
Sbjct: 40 GVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRA 99
Query: 113 -------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+ GFVPD T++IL + C G++ EA E ++E+S G P + + +++
Sbjct: 100 KTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDG 159
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ K E L+ET+ S G DV T I + + KE +D+A +++ +++
Sbjct: 160 LCKASKT---EKAYELLETLVSS---GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLK 213
Query: 226 DG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G L L G+ D+A F EM K + Y
Sbjct: 214 RGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAY 258
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
++V+N C++ L + + F M +G VP+ +T+ I+++ C GK+ EA F
Sbjct: 287 IDVYNALMDGYCKEGRL--DEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 344
Query: 144 LQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
L+ + G P V + A+Q++++MI+ G PD T+N+L+ CK
Sbjct: 345 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 404
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 34/169 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M + PD T+ IL++ C + K +A E L E+ D+G P + +++ + K G
Sbjct: 1 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60
Query: 172 V----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
P T+N+LI +CK + G DV T I
Sbjct: 61 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
+ K IDEAF L+ + G+ P+L ++ D C S+ +
Sbjct: 121 LADGLCKRGRIDEAFELVKEM--SGNGCTPNLVTYNTLIDGLCKASKTE 167
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 50/244 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++I++ K G +D A+++ C V+ Y +L H F M
Sbjct: 187 TYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 246
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-----------KGFNPPVR--SA 159
+ K D + LVN +C S + +EAQ+ + + G+ R
Sbjct: 247 VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEI 306
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
+ M +G VP+++T+N +++ +CK G++ G DV + I I
Sbjct: 307 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDG 366
Query: 207 VSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ K EA ++L +++ G F +FDDA M P+
Sbjct: 367 LFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPD 426
Query: 256 RPVY 259
Y
Sbjct: 427 NVTY 430
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 43/199 (21%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T +++++ KHG +D A + C V+ YN + +
Sbjct: 323 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 382
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
MI+ G PD T+ L+ +C + +A L+ + G +P
Sbjct: 383 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 442
Query: 156 VRSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A +++++M++ G V T+N++I+ +CK G L G+ A+ T
Sbjct: 443 LGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYN 502
Query: 202 ISIPAVSKEFMIDEAFRLL 220
I I + KE +DEA LL
Sbjct: 503 IFIDRLCKEGRLDEASSLL 521
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC---- 108
E++ L + T +L+I+ F K +D A+ + C V+ YN + C
Sbjct: 555 EMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKL 614
Query: 109 ---------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
F M +G V ++T+L+ C G+ +EA + L+E++
Sbjct: 615 DKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMA 663
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 43/180 (23%)
Query: 112 MIRKGFVPDK-RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M+R G V T+ +++ C G +++A + ++ G + ++++ K+G
Sbjct: 453 MLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEG 512
Query: 171 -------------SVPDLETFNSLIETICKSGEL--------------GLCADVNTNKIS 203
++ D ++ ++I +CK+ +L GLC +T +
Sbjct: 513 RLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLL 572
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIK 250
I A +K +DEA LL +V+ G PS L + D A+ F EM ++
Sbjct: 573 IDAFTKTKRLDEALTLLELMVQRGCS--PSVITYNMVITCLCKLDKVDKAWELFDEMAVR 630
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T + II K G+++ A E+ T+ C+ V+ YN L F+ M
Sbjct: 254 TYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEM 313
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+G P+K T++IL+++ C G++ EA L+ + +K P S
Sbjct: 314 FSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRL 373
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A +++ MI G +PD+ +N+++ +CK+G
Sbjct: 374 DLAIGIMDYMISNGCLPDIVNYNTILAALCKNG 406
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 29/149 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS----LHVCFVR---------MIRKG 116
I+ K+G + A+E+FNK C V YN+ L C R MI KG
Sbjct: 398 ILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKG 457
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD+ T+ L++ C G + EA L ++ GF P V S A
Sbjct: 458 IDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAI 517
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSG 189
M +MI++G P+ T+ LIE I +G
Sbjct: 518 GMFAEMIEKGCRPNETTYILLIEGIGFAG 546
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ +G +PD T+ ++ C G + A E + L+ KG P V S
Sbjct: 243 MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGK 302
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-------------LCADVNTNKI 202
+++V +M +G P+ T++ LI ++C+ G + L D +
Sbjct: 303 WDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDP 362
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKT 251
I A+ KE +D A ++ ++ +G + + +L G + A F++++
Sbjct: 363 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 422
Query: 252 HPPNRPVY 259
PPN Y
Sbjct: 423 CPPNVSSY 430
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 49/177 (27%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
RM +GF+PD T+ I++ + C+ K+ A L +L P V
Sbjct: 172 RMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEG 231
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +++ +M+ +G +PD+ T+N++I +CK G M++
Sbjct: 232 GINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG----------------------MVE 269
Query: 215 EAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
A L+ +L G + F + G++D+ +EM + PN+ Y+
Sbjct: 270 RAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYS 326
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 66/182 (36%)
Query: 121 KRTHTI-LVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------------- 156
+ TH + L+N C +GK E+ FL+ L +KG+ P V
Sbjct: 77 RETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM 136
Query: 157 ---------------------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+A Q++N+M +G +PD+ T+N +I ++C
Sbjct: 137 EILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 196
Query: 190 ELGLC-------------ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
+LGL V T I I A E I+EA +LL ++ G L P +
Sbjct: 197 KLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG--LLPDMYT 254
Query: 237 FD 238
++
Sbjct: 255 YN 256
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
++ H F+ M K PD T+ ++N +C SG+ +A++ LQE+ ++ NP V +
Sbjct: 269 HSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSA 328
Query: 162 MVNKMIKQGS----------------VPDLETFNSLIETICKSGEL-------------G 192
++N +K+G +P T++S+I+ CK L G
Sbjct: 329 LINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKG 388
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
D+ T I + +D+ +LL + E G
Sbjct: 389 CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAG 423
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 93/259 (35%), Gaps = 77/259 (29%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M P S+ T S +I+ F K +D A +F C ++ +N+L + R
Sbjct: 349 MLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKR 408
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M G V + T+T L++ +C G + AQ+ LQE+ G P V +
Sbjct: 409 VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNT 468
Query: 162 MVNKMIKQGSV---------------------------PDLETFNSLIETICKSGEL--- 191
+++ + G + PD++T+N LI + G+
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEA 528
Query: 192 ----------GLCADVNTNKISIPAVSKEFMIDEAFRLL--------------------- 220
G+ D T I + K+ +DEA ++
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITG 588
Query: 221 ---CNLVEDGHKLFPSLGQ 236
+V+DG +LF +GQ
Sbjct: 589 YCKAGMVDDGLELFCEMGQ 607
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ M +G VPD T++ +++ C ++ EA + + K F+P V + ++ K
Sbjct: 532 YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCK 591
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G V D +E C+ G+ G+ AD T I K ID A + ++ G
Sbjct: 592 AGMVDD------GLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSG 644
>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 757
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 53/257 (20%)
Query: 22 ANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTL-SLIIEEFGKHGLI 80
+ ++RHD + ++ L +S+L+ + I L P+ + + + ++IE +GK G++
Sbjct: 143 SGLIRHDRDTHMKMIKM-LGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIV 201
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTIL 127
+V++F K ++ + YNSL +R M+ +G P + T+ ++
Sbjct: 202 QESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLM 261
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ + S ++ A F +++ +G + PD TFN++I C+
Sbjct: 262 LWGFFLSLRLETALRFFEDMKTRGIS-------------------PDDATFNTMINGFCR 302
Query: 188 SGELG----LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCF 243
++ L ++ NKI VS MI K + ++ + DD
Sbjct: 303 FKKMDEAEKLFVEMKGNKIGPSVVSYTTMI---------------KGYLAVDRVDDGLRI 347
Query: 244 FSEMQIKTHPPNRPVYA 260
F EM+ PN Y+
Sbjct: 348 FEEMRSSGIEPNATTYS 364
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++++ K ++ A +V K V+ +NSL F + M
Sbjct: 94 TYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM 153
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ KG P+ T++ L++ C S K EA+E L+E+ G P +
Sbjct: 154 VAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKI 213
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+QM+ +M G PD+ ++S+I CKSG+L
Sbjct: 214 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 248
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 41/190 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM G PD ++ +++A+C SGK+ EAQ+ LQE+ + +P V + +++ + K G
Sbjct: 222 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 281
Query: 171 SV-----------------PDLETFNSLIETICKSGEL-------------GLCADVNTN 200
+ PD+ T++++I +CKS L G DV T
Sbjct: 282 KIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTY 341
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQI 249
I + K ++EA LL + G L L + D+A EM+
Sbjct: 342 TTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRN 401
Query: 250 KTHPPNRPVY 259
PPN Y
Sbjct: 402 AGCPPNLVTY 411
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 50/213 (23%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD+ + P II G +D A++ + C V+ Y +L F R
Sbjct: 23 PDAFTHTP-----IITAMANAGDLDGAMDHLR---SMGCDPNVVTYTALIAAFARAKKLE 74
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
M +G P+ T+ +LV+A C + AQ+ ++++ + GF P V +
Sbjct: 75 EAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLV 134
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
A++++ M+ +G P++ T+++LI+ +CKS + G+
Sbjct: 135 DGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVT 194
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
D T I + K I+EA ++L + G
Sbjct: 195 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG 227
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
RM + G PD T+T +++ C G++ EA+ LQ + G P
Sbjct: 328 RMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKAR 387
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A++++ +M G P+L T+N+++ +C SG +
Sbjct: 388 KVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRI 424
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 19/178 (10%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
+S V P T S +I K ++ A ++ ++ C V+ Y ++ +C
Sbjct: 295 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRL 354
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
M R G P+ T+T L++ C + K+ EA+ ++E+ + G P + + M
Sbjct: 355 EEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTM 414
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
VN + G + + + L++ + K G D T + + A+ ++ EA +LL
Sbjct: 415 VNGLCVSGRIKEAQ---QLVQRM-KDGRAECSPDAATYRTIVNALMSSDLVQEAEQLL 468
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 34/188 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
TL+ ++ +G+ ++ E+ N + YNSL + R +
Sbjct: 643 TLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREI 702
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
I KG PD + ++ A+C +G+M+EA E+ D G P V +
Sbjct: 703 IAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMF 762
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISI-PAVSKEFMIDE 215
A +V MIK G P+ T+NSLI+ CK + +N ++ P+V+K DE
Sbjct: 763 IEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTK----DE 818
Query: 216 AFRLLCNL 223
RLL L
Sbjct: 819 ERRLLERL 826
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 30/155 (19%)
Query: 66 TLSLIIEEFGK--------HGLIDN------AVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
T ++I+ +GK GL+D+ A +++ T + + LY F
Sbjct: 257 TYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEE 316
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M GF PDK T+ L++ + S + REA E L+E+ GF P + +
Sbjct: 317 MKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGL 376
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A ++ ++M+K+G PD+ T+ +L+ K+G+
Sbjct: 377 LDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 65/243 (26%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
++ D + + + +I + +G AV VF K C+ ++ YN + + +
Sbjct: 211 LRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGM 270
Query: 112 -----------MIRKGFVPDKRTHTILVNAWCSSGKM-REAQEFLQELSDKGFNPPV--- 156
M G PD T+ L+++ C G + EA E +E+ GF+P
Sbjct: 271 PWSKIAGLVDSMKSSGVAPDLYTYNTLISS-CRRGSLYEEAAEVFEEMKAAGFSPDKVTY 329
Query: 157 -------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS 203
R A +++ +M G P + T+NSLI + G
Sbjct: 330 NALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDG-------------- 375
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTH 252
++DEA L +V+ G K F G+ D A F EM++
Sbjct: 376 --------LLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGC 427
Query: 253 PPN 255
PN
Sbjct: 428 QPN 430
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 40/181 (22%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------- 158
F+ + +GF PD T +V+ + + + E L + D GF P + +
Sbjct: 628 AFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYS 687
Query: 159 -------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVN 198
++ ++ ++I +G PD+ +FN++I C++G + GL DV
Sbjct: 688 RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVI 747
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEM 247
T I + + + M EA ++ ++++G K F L + D+A F S +
Sbjct: 748 TYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNL 807
Query: 248 Q 248
+
Sbjct: 808 R 808
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 44/231 (19%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ E MK S T + +++ +GK A+EV + A ++ YNSL +
Sbjct: 312 EVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAY 371
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
R M++KG PD T+T L++ + +GK A + +E+ G P +
Sbjct: 372 ARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNI 431
Query: 157 RSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSG----------- 189
+ ++ +G+ VPD+ T+N+L+ ++G
Sbjct: 432 CTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 491
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
G + +T I A S+ D+A + +++ G + P L ++
Sbjct: 492 MKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAG--VTPDLSTYN 540
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 14/144 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ G G ++VF + C ++ +N+L F + M
Sbjct: 433 TFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 492
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R GFVP++ T L++A+ G +A + + D G P + + ++ + + G
Sbjct: 493 KRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLW 552
Query: 173 PDLE-TFNSLIETICKSGELGLCA 195
E + + CK EL C+
Sbjct: 553 EQSEKVLAEMKDGRCKPNELTYCS 576
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 62/235 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S+II+ K G D A E+F + A +G +PD +++
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKA----------------------QGMIPDVISYS 276
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
L++ +C +GK +++ E+ D+G P V AK+++ MI++
Sbjct: 277 TLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQR 336
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G VP+L T+NSLI+ C G+L GL D + I K + + EA
Sbjct: 337 GIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEA 396
Query: 217 FRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
L +++ G L L G+ DA F M+ N +Y
Sbjct: 397 MNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYG 451
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
NS F+ M KG PD+ ++T L+N +C + K++EA E+ G +P V + +
Sbjct: 359 NSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTL 418
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+ + ++G V D + +++T G+ A+ I + + K + EA L
Sbjct: 419 LKGLFQKGKVGDAKKLFGVMKT------YGVSANSQIYGIFLDGLCKNDCLFEAMELFNE 472
Query: 223 LVEDGHKL 230
L KL
Sbjct: 473 LKSYNFKL 480
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 47/200 (23%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K +MK +S Q + ++ K+ + A+E+FN+ ++N
Sbjct: 433 KLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYN--------------- 477
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----- 164
F + ++ L++ C +GK+ A E ++LS +G P V + M++
Sbjct: 478 -------FKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKV 530
Query: 165 -----------KMIKQGSVPDLETFNSLIETICKSGELG---------LCADVNTNKISI 204
KM + G PD+ +N+L+ C+ +L + DV+ N S
Sbjct: 531 GQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASC 590
Query: 205 PAVSKEFMIDEAFRLLCNLV 224
V DE ++ +L+
Sbjct: 591 TIVVDMLCKDEKYKKFVDLL 610
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 21/175 (12%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
Y+ L + M G PD T +IL N C+ ++ EA + + +G+ P V +
Sbjct: 107 YSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTT 166
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
A ++ +M K G P+ T+ +LI+ +C++G + + ++ ++
Sbjct: 167 LIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLN-- 224
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
S+ + + + +++ DG +G+ D+A F EM+ + P+ Y+
Sbjct: 225 DASQYGVNCKPGVITYSIIIDG---LCKVGREDEAKELFEEMKAQGMIPDVISYS 276
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
+ W+ E + + L T +++I F K G +DNA +F K C ++ YN+L
Sbjct: 500 TAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLL 559
Query: 107 VCFV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
F +M++K P+ + TI+V+ C K ++ + L
Sbjct: 560 CGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLL 610
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP 154
++ H +VRM+ G PD RTHT+ + ++C +G+ A L+ L ++G +
Sbjct: 26 HDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCT 85
Query: 155 PVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
VR A+ + ++M+++ PD+ TFN+++ +C+ G++
Sbjct: 86 VVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDI 131
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 57/250 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T +++I K G I +A V N V +N++ + RM
Sbjct: 326 TYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERM 385
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
G PD T+ ++N C +GK +E E +E+ KG P +
Sbjct: 386 WMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQL 445
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A ++ +M + G VPD +FN+LI C++G+L G A +T I
Sbjct: 446 EEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNIL 505
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIK 250
I A S + + A ++ ++ G+K P L + D A+ +EM K
Sbjct: 506 IGAYSSKLNMQMAEKIFGEMISKGYK--PDLYTYRVLVDGSCKAANVDRAYVHLAEMVSK 563
Query: 251 THPPNRPVYA 260
P+ +
Sbjct: 564 GFVPSMATFG 573
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 29/137 (21%)
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
I KGFVPD+ T+ L+N C+ G + A E E K P +
Sbjct: 246 IFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLI 305
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A Q++N+M++ G PD+ T+N +I +CK G + G DV T
Sbjct: 306 LHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTM 365
Query: 204 IPAVSKEFMIDEAFRLL 220
I K +D A +L+
Sbjct: 366 IDGYCKRLKLDSALQLV 382
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 48/229 (20%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+SV T ++ I + G ++ AV + A+ V+ YN+L +C
Sbjct: 145 GMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPD-VVTYNTLMRGLCKDSKVQEA 203
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
RM+ +G +PD T+ +++ +C ++EA E L++ KGF P + ++N
Sbjct: 204 AQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLING 263
Query: 166 MIKQGSV----------------PDLETFNSLIETICKSG-------------ELGLCAD 196
+ +G V PDL +NSL++ +C+ G E G D
Sbjct: 264 LCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPD 323
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
+ T I I + K I +A ++ + + G+ P + F+ D +C
Sbjct: 324 IWTYNIVINGLCKMGNISDAAVVMNDAIVKGY--LPDVFTFNTMIDGYC 370
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 55 MKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNK-------CTAFNCQQCVLLYNS- 104
M D L P T+S +I F ++G +D A +F K TA + Y+S
Sbjct: 455 MSQDGL--VPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSK 512
Query: 105 -----LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
F MI KG+ PD T+ +LV+ C + + A L E+ KGF P + +
Sbjct: 513 LNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATF 572
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD--VNTNKISIPAVSKEFMIDEAF 217
+++N + V + ++I + + G + D ++T+K I A + +++E
Sbjct: 573 GRVLNSLAMNHRVSEAV---AIIHIMVRMGVVPEVVDTILSTDKKEIAA--PKILVEE-- 625
Query: 218 RLLCNLVEDGHKLFPS 233
L++ GH +P+
Sbjct: 626 -----LMKKGHISYPT 636
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 40/197 (20%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
Y++ H+ F M+R+ PD T +++A C G + E+ L ++ +G + +
Sbjct: 97 YDARHL-FDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNI 155
Query: 162 MVNKMIKQGSV---------------PDLETFNSLIETICKSGEL-------------GL 193
+ + + G + PD+ T+N+L+ +CK ++ G
Sbjct: 156 WIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGC 215
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSL-------GQFDDAFC 242
D T I K M+ EA LL + + G + SL G + A
Sbjct: 216 IPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALE 275
Query: 243 FFSEMQIKTHPPNRPVY 259
F+E Q K P+ VY
Sbjct: 276 LFNEAQAKDLKPDLVVY 292
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R+G +PD T +++ C GK +EA EF ++ KG P + + +++
Sbjct: 320 FREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAA 379
Query: 169 QGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+G V D L FNS+ G+ AD + I I A K M+DEA + + E G
Sbjct: 380 EGYVVDMLNLFNSMEGN-------GIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERG 432
Query: 228 H-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F +G+ DA F++M P+ VY
Sbjct: 433 VMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVY 475
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 55/230 (23%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR------------- 114
+++I+ +GK G++D A+ +F + Y ++ F RM R
Sbjct: 406 NILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIA 465
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
G PD + L+ +C G + +A+E + E+ +G P+
Sbjct: 466 MGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGI------------------PRPN 507
Query: 175 LETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
FNS+I ++CK G +G DV T I +++AF +L
Sbjct: 508 TVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLD 567
Query: 222 NLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
++ G + + +L G+ DD F EM K P Y
Sbjct: 568 AMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYG 617
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 29/145 (20%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HVC-----FVRMIRKGFVPDKR 122
KHG A E F+ A + ++ Y+ L +V F M G V D
Sbjct: 344 KHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHS 403
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------RSAKQM--VNKM 166
+ IL++A+ G M EA ++ ++G P R A M N+M
Sbjct: 404 VYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQM 463
Query: 167 IKQGSVPDLETFNSLIETICKSGEL 191
I G PD +NSLI+ C G L
Sbjct: 464 IAMGLKPDTIVYNSLIQGFCMHGNL 488
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RMIRKG 116
II K G + A ++F+ + V+ +NSL + MI G
Sbjct: 514 IINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVG 573
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD T++ L++ +C +G++ + +E+ KG P + AK
Sbjct: 574 IEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAK 633
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKS 188
+M ++MI+ G+ D+ T ++ +C++
Sbjct: 634 KMCHEMIESGTTMDISTCGIILGGLCRN 661
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 44/198 (22%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
T +I+ ++ D A+ +F K A N + + + N++
Sbjct: 649 STCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTM------------------- 689
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------ 172
++A K EA E +S G P + M+ ++K+GSV
Sbjct: 690 ---IDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEK 746
Query: 173 ----PDLETFNSLIETICKSGELGLCAD----VNTNKISIPAVSKEFMIDEAFRLLCNLV 224
P N++I + + GE+ + V+ IS+ A + M+ R
Sbjct: 747 SGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRK--GKY 804
Query: 225 EDGHKLFPSLGQFDDAFC 242
+ K P++ QF D FC
Sbjct: 805 REQIKSLPAMYQFFDEFC 822
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRM 112
T S++I+ F + G +D A+ K + V YNSL H F M
Sbjct: 403 TYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEM 462
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
I KG P ++T L++ +C+ GK+ EA E++ KG P +
Sbjct: 463 IDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRM 522
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A ++ ++M++Q +P+ T+N +IE CK G
Sbjct: 523 TDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEG 555
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 108/275 (39%), Gaps = 64/275 (23%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAV 84
+R DIY + R L + + I+ M+ L+V +++I K+ + AV
Sbjct: 224 IRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVV--VYNVLIHGLCKNKRVWEAV 281
Query: 85 EVFNKC-----TAFNCQQCVLLYNSLHVCFVR-----------MIRKGFVPDKRTHTILV 128
E+ N TA C L+ L +C V+ MI GFVP + + LV
Sbjct: 282 EIKNGLIQKGLTASEVTYCTLV---LGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLV 338
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
GK+ +A + +VN++ K G++P L +N+LI ++CK
Sbjct: 339 EGLRRKGKVVDAFD-------------------LVNRVKKVGAMPSLFVYNALINSLCKD 379
Query: 189 -------------GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL--FP- 232
GE GLCA+ T I I + + +D A L ++ G K+ +P
Sbjct: 380 GKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPY 439
Query: 233 --------SLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LG A FF EM K P Y
Sbjct: 440 NSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSY 474
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 42/202 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
LS ++E + G + +A ++ N+ + +YN+L + F M
Sbjct: 333 ALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEM 392
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
KG + T++IL++++C GK+ A FL ++ G V ++N
Sbjct: 393 GEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNL 452
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+MI +G P + ++ SLI C G+L G+ + T
Sbjct: 453 SAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTL 512
Query: 204 IPAVSKEFMIDEAFRLLCNLVE 225
I A+ + + +AFRL ++E
Sbjct: 513 ISALFRANRMTDAFRLFDEMLE 534
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 40/189 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----------------P 154
+M++KG VPD T+ L+++ CS+G++ EA++F+ +L + F
Sbjct: 566 QMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEG 625
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK----SGELGLCADVNTNKIS------- 203
+R A + +M+K+G DL + LI+ K S GL +++ ++
Sbjct: 626 RLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYT 685
Query: 204 --IPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIK 250
I SK + +AF + ++++G L L G D A + EM +
Sbjct: 686 SMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVS 745
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 746 NSTPNHVTY 754
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KG + + ++ ILV +C G++ EA + L E+ D P +
Sbjct: 779 KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDG 838
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
A + + M+ +G PD +N LI C +GELG
Sbjct: 839 AIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELG 872
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 43/174 (24%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
+M + G VP+ ++ L++ +C G+M EA+ + KG P V +
Sbjct: 192 QMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIE 251
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A Q++++ +++G VPD+ TF ++I +C++G P +++
Sbjct: 252 RIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGR--------------PLAAQQL--- 294
Query: 215 EAFRLLC------NLVEDGHKL--FPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
FR +C N++ G L G ++AF F EMQ T PN +Y
Sbjct: 295 --FRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYT 346
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 83/202 (41%), Gaps = 35/202 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++II K G + A+ + C V+ Y++L F M
Sbjct: 169 TYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLM 228
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ KG P+ T+T L+N +C ++ EA + L E KG P +
Sbjct: 229 VSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRP 288
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFM 212
+A+Q+ + G P++ T+ L++ +CK G L L ++ + + V +
Sbjct: 289 LAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTIL 348
Query: 213 IDEAFRLLCNLVEDGHKLFPSL 234
ID + C ++DG +LF L
Sbjct: 349 IDSLCK--CGKIKDGKELFSRL 368
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R P+ +TIL+++ C GK+++ +E L D+G P V + +V + K
Sbjct: 330 FQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCK 389
Query: 169 QGSV 172
+G +
Sbjct: 390 EGLI 393
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
++++ G P T T L+N C GKM + ++ +G P V + ++N
Sbjct: 122 KILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSG 181
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGEL 191
+M K G VP++ +++LI+ C G++
Sbjct: 182 KANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQM 218
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW +++MK + V +T +I+ ++ + ++ AV FN ++ + +N L
Sbjct: 75 MWDVVKVMKSKRM-VNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLS 133
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C + +RK FVPD +T++IL+ W + +A+E +E+ G P
Sbjct: 134 ALCKSKNVRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPD 193
Query: 156 VRSAKQMVNKMIKQGSVPD-LETFNSLIETICK 187
+ + MV+ + K G V + L N + T+CK
Sbjct: 194 IVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCK 226
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 28/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------------CFVRM 112
T ++++ K G +D A+ + N+ + C+ +Y+ L H F+ M
Sbjct: 196 TYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEM 255
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD + L+ A+C + +++ L E+ KG P R+ +++ +I +G
Sbjct: 256 ENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGET 315
Query: 173 ---------------PDLETFNSLIETICKSGEL 191
PD +T+ +I+ C+ EL
Sbjct: 316 DEAYRVFLRMIKVCEPDADTYTMMIKMFCERDEL 349
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
K F+P T +L+N C G + +A L+E+ +KG P + ++ +IK+G
Sbjct: 362 KRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEG 417
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ F ++GL+D +E+ + M+ G +PD T+T
Sbjct: 355 TFNILVDFFCQNGLVDRVIELLEQ----------------------MLEHGCIPDVITYT 392
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++N +C G + EA L+ +S G P S A+++++ MI+Q
Sbjct: 393 TVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQ 452
Query: 170 GSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEA 216
G +P+ TFN+LI +CK G EL G D+ + I + K +EA
Sbjct: 453 GCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 512
Query: 217 FRLLCNLVEDG 227
LL ++ G
Sbjct: 513 LELLNVMINKG 523
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S + ++++ ++ +L++ + G +D VE+ K +F C+ ++ YN++
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220
Query: 106 -HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+C V M+R G P+ T L+ C +G + E L ++ + G
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCT 280
Query: 154 PPVR----------------SAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
P +R A ++++M G P++ +N++++ +C +
Sbjct: 281 PDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSA 331
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 34/162 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ------QCVLLYNSLHVCFV 110
P++ + FP I+ GLI +A+ V ++ C +L F
Sbjct: 106 PNAYTYFP-----IVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFR 160
Query: 111 RMIR-------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
+R KG D ++V+A C G + E E L++L G P + S
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
++++ +M++ G P++ TFN+LI +C++G
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNG 262
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+ P T+ S + + G D +++F+ + LYN++ +C
Sbjct: 523 GITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRA 582
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
F M+ G +P++ T+TIL+ S G +REAQ+ L EL +
Sbjct: 583 IDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 627
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I ++GL + E ++ C + +Y ++ +C RM
Sbjct: 250 TFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRM 309
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-------LSDKGF---------NPPV 156
G P+ + ++ CS+ + EA++ L E L D F N V
Sbjct: 310 PSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLV 369
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+++ +M++ G +PD+ T+ ++I CK G
Sbjct: 370 DRVIELLEQMLEHGCIPDVITYTTVINGFCKEG 402
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 51/189 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + +I K GL++ A+E+ + M+ G PD +
Sbjct: 458 PVTFNTLINFMCKKGLVEQAIELLKQ----------------------MLVNGCSPDLIS 495
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
++ +++ +GK EA E L + +KG P M + + ++G
Sbjct: 496 YSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQ 555
Query: 173 -----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
D +N++I ++CK E G + +T I I ++ E ++
Sbjct: 556 DATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVR 615
Query: 215 EAFRLLCNL 223
EA LL L
Sbjct: 616 EAQDLLSEL 624
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 100/244 (40%), Gaps = 40/244 (16%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T +++I+ + G++D A+ +FN+ + V+ Y ++
Sbjct: 376 VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 435
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G PDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 495
Query: 153 NPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCAD 196
+ + ++N + K G V PD ++ L++ C G++
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALR 555
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
V +S I+ + C LV + +G+ D+ F EM + P+
Sbjct: 556 VFDAMVSAG-------IEPNVVVYCTLVNG----YCKIGRIDEGLSLFREMLQRGIKPST 604
Query: 257 PVYA 260
+Y+
Sbjct: 605 ILYS 608
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 31/162 (19%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN------SLHVCFVR- 111
S+ P TLS+++ K+G I A +VF+ V YN + C V
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 378
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-- 163
M+ G PD T +L+ A+ + G + +A E+ D G P V + + ++
Sbjct: 379 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 438
Query: 164 --------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
N+MI QG PD +N LI+ C G L
Sbjct: 439 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 480
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK--- 165
F M R +PD T ++L+ + C GK++EA++ ++ KG NP V S M+N
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 371
Query: 166 -------------MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
M+ G PD TFN LI+ G L G+ DV T
Sbjct: 372 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 431
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I A+ + +D+A +++ G
Sbjct: 432 YRTVIAALCRIGKMDDAMEKFNQMIDQG 459
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKG 116
+I+ F K G ++ A ++F + ++ YNS+ +C R M+ K
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 284
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
+P+ T+ L+ + S+G+ +EA +E+ P V + A+
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 344
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ + M +G PD+ ++N ++ G L G+ D T + I A
Sbjct: 345 DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 404
Query: 208 SKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNR 256
+ M+D+A + + + G K +G+ DDA F++M + P++
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464
Query: 257 PVY 259
Y
Sbjct: 465 YAY 467
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--NPPVRSAKQ 161
+L + R G VPD +++IL+ + C GK +A + L+ +++ G +P V +
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 224
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKS 188
+++ K+G V PDL T+NS++ +CK+
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA 267
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDK 121
GK G D+ + + + A C V+ YN++ C F M+++G PD
Sbjct: 196 GKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 254
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T+ +V+A C + M +A+ FL+++ +K P + A ++ +
Sbjct: 255 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADV 197
M + +PD+ T + L+ ++CK G++ DV
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 346
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 51/184 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++++ K G+I A VF T + Y++L F M
Sbjct: 283 TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIM 342
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ KGF P R + IL+N C S ++ EA+ L E+ D+ P
Sbjct: 343 VGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRP 402
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ A+++ +M G +PD T++ L++ +CK G L DEA
Sbjct: 403 QVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHL----------------------DEA 440
Query: 217 FRLL 220
FRLL
Sbjct: 441 FRLL 444
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 34/171 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F + + GF P T+T ++ C G A + L+++ +KG P V + +++
Sbjct: 164 FDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCK 223
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+M+ QG P++ T++S++ C G+L + + T
Sbjct: 224 DRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVT 283
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEM 247
I + + KE MI EA R+ + E+G + P + D +C S+M
Sbjct: 284 FTILVDGLCKEGMILEARRVFEMMTENGVE--PDAYTYSALMDGYCLQSQM 332
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 36/181 (19%)
Query: 98 CVLLYNSLHVCFV-----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
C+ N HV F +M + G P T L+N CS K+ +A + E+ GF
Sbjct: 113 CLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGF 172
Query: 153 NPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
P + +A Q++ KM ++G PD+ +N++I+++CK D
Sbjct: 173 APSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCK--------D 224
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL--FPSLGQFDDAFCFFSEMQIKTHPP 254
N+ ++ S+ M+D+ + N+V L F +LGQ ++A F +M + P
Sbjct: 225 RRANE-AMYFFSE--MVDQG--IPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMP 279
Query: 255 N 255
N
Sbjct: 280 N 280
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + II+ K G NA+++ K C+ V+ YN++ +C F M
Sbjct: 178 TYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEM 237
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G P+ T++ +++ +C+ G++ EA +++ + P + +V+ + K+G +
Sbjct: 238 VDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMI 297
Query: 173 ----------------PDLETFNSLIETICKSGEL 191
PD T+++L++ C ++
Sbjct: 298 LEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQM 332
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 43/150 (28%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116
PDS+ T S++++ KHG +D A + + + +YN
Sbjct: 419 PDSI-----TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYN------------- 460
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
IL+ C+ GK+ A+E L KG P V A
Sbjct: 461 ---------ILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEAC 511
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+M KM+ G +P+ T+N I+ ++G+
Sbjct: 512 EMFRKMVVNGCLPNSCTYNVAIQGFLRNGD 541
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL++ A+EV + + C L YN L F + M
Sbjct: 88 TFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELM 147
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD ++ L+ A C +G++ A + L +L KG +P + S +++ + K G
Sbjct: 148 VSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKT 207
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
E L E I K GL D+ T + +E I+EA R C + + G
Sbjct: 208 K--EALELLDEMISK----GLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMG 256
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 33/200 (16%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ELM S +P +S ++ ++G +D A+++ ++ C ++ YN++
Sbjct: 144 VELMV--SRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGL 201
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ MI KG PD T+T + + C K+ EA ++ D G P V
Sbjct: 202 TKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTV 261
Query: 157 ----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
+A + + MI G +P+ T+ L+E + G + D+
Sbjct: 262 VLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQ 321
Query: 201 KISIPAVSKEFMIDEAFRLL 220
S V+K+FM A ++L
Sbjct: 322 LCSRGVVNKKFMKKGAVKML 341
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M KG PD T+ +++N C G++ +A EFL+ L G P S
Sbjct: 7 MRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAER 66
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A++++ +M +G P++ TFN LI +C+ G
Sbjct: 67 WEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRG 100
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 29/136 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVC---- 108
++PD + T + I + I+ A+ F K + V+LYN+ L +C
Sbjct: 222 LQPDII-----TYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRE 276
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F MI G +P++ T+TILV G ++EA++ L +L +G
Sbjct: 277 THNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLCSRG---------- 326
Query: 162 MVN-KMIKQGSVPDLE 176
+VN K +K+G+V L+
Sbjct: 327 VVNKKFMKKGAVKMLD 342
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MI 113
+ +I ++G ID E + K + Q ++LYN+L F + MI
Sbjct: 348 FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
R+G PDK T+T L++ +C G + A E +E+ G +V M K+G V
Sbjct: 408 RRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVI 467
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
D E +L E + G+ D T + + A K+ F+LL + DGH PS
Sbjct: 468 DAE--RALREML----RAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH--VPS 519
Query: 234 LGQFD---DAFCFFSEMQ 248
+ ++ + C +M+
Sbjct: 520 VVTYNVLLNGLCKLGQMK 537
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 29/154 (18%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF------- 117
++++ +F K G I +A +VF++ T + Q V+ +N+L C V + +GF
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302
Query: 118 ----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVR 157
PD T++ L+NA C KM A E+ +G N +
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
K+ KM+ +G PD+ +N+L+ CK+G+L
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDL 396
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 40/197 (20%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
+ H F M ++G +P+ T L++ +G++ +E Q++ KG P +
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTL 386
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKI 202
+A+ +V+ MI++G PD T+ +LI+ C+ G+ L + +++ N I
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGI 446
Query: 203 SIPAVS---------KEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFC 242
+ V KE + +A R L ++ G K F G F
Sbjct: 447 ELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFK 506
Query: 243 FFSEMQIKTHPPNRPVY 259
EMQ H P+ Y
Sbjct: 507 LLKEMQSDGHVPSVVTY 523
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 46/187 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
++PD + T + +I+ F + G ++ A+E+ + + + +++L VC +
Sbjct: 411 LRPDKI-----TYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSAL-VCGMCKEG 464
Query: 111 ----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
M+R G PD T+T++++A+C G + + L+E+ G P V
Sbjct: 465 RVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYN 524
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIET----------ICKSGELGLC 194
++A +++ M+ G VPD T+N+L+E + E+G+
Sbjct: 525 VLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIV 584
Query: 195 ADVNTNK 201
AD+ + K
Sbjct: 585 ADLASYK 591
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++ ++ GF + IL+N +C G + +AQ+ E++ + P V S ++N K
Sbjct: 228 YMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCK 287
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL 191
G++ PD+ T+++LI +CK ++
Sbjct: 288 VGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKM 326
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 33/238 (13%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
++W I M+ + P+T +++ E + G D AV++F C Q + +N++
Sbjct: 109 TVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTIL 168
Query: 107 --VC----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C R +R F D T+ +++N WC + +A E L+E+ ++G NP
Sbjct: 169 DVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINP 228
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ + M+ + G + F +E + E+ DV T + I
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEF--FLEMKKRDCEI----DVVTYTTVVHGFGVAGEIK 282
Query: 215 EAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPNRPVY 259
A + ++ +G + PS+ + ++A F EM + + PN Y
Sbjct: 283 RARNVFDEMIREG--VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTY 338
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ MK + T + ++ FG G I A VF++ V YN++
Sbjct: 250 WEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQV 309
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
V F M+R+G+ P+ T+ +L+ +G+ +E +Q + ++G P
Sbjct: 310 LCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPN 369
Query: 156 VRSAKQMVN----------------KMIKQGSVPDLETFNSLI 182
++ M+ KM +P+L+T+N LI
Sbjct: 370 FQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 412
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 32/139 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +++ F + G I +A E F + +C+ V+ Y ++ F M
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
IR+G +P T+ ++ C V +A M +M+++G
Sbjct: 292 IREGVLPSVATYNAMIQVLCKKDN-------------------VENAVVMFEEMVRRGYE 332
Query: 173 PDLETFNSLIETICKSGEL 191
P++ T+N LI + +GE
Sbjct: 333 PNVTTYNVLIRGLFHAGEF 351
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 33/238 (13%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
++W I M+ + P+T +++ E + G D AV++F C Q + +N++
Sbjct: 109 TVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTIL 168
Query: 107 --VC----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C R +R F D T+ +++N WC + +A E L+E+ ++G NP
Sbjct: 169 DVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINP 228
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ + M+ + G + F +E + E+ DV T + I
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEF--FLEMKKRDCEI----DVVTYTTVVHGFGVAGEIK 282
Query: 215 EAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPNRPVY 259
A + ++ +G + PS+ + ++A F EM + + PN Y
Sbjct: 283 RARNVFDEMIREG--VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTY 338
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ MK + T + ++ FG G I A VF++ V YN++
Sbjct: 250 WEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQV 309
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
V F M+R+G+ P+ T+ +L+ +G+ +E +Q + ++G P
Sbjct: 310 LCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPN 369
Query: 156 VRSAKQMVN----------------KMIKQGSVPDLETFNSLI 182
++ M+ KM +P+L+T+N LI
Sbjct: 370 FQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 412
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 32/139 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +++ F + G I +A E F + +C+ V+ Y ++ F M
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
IR+G +P T+ ++ C V +A M +M+++G
Sbjct: 292 IREGVLPSVATYNAMIQVLCKKDN-------------------VENAVVMFEEMVRRGYE 332
Query: 173 PDLETFNSLIETICKSGEL 191
P++ T+N LI + +GE
Sbjct: 333 PNVTTYNVLIRGLFHAGEF 351
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 100/244 (40%), Gaps = 40/244 (16%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T +++I+ + G++D A+ +FN+ + V+ Y ++
Sbjct: 389 VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 448
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G PDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 449 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 508
Query: 153 NPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCAD 196
+ + ++N + K G V PD ++ L++ C G++
Sbjct: 509 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALR 568
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
V +S I+ + C LV + +G+ D+ F EM + P+
Sbjct: 569 VFDAMVSAG-------IEPNVVVYCTLVNG----YCKIGRIDEGLSLFREMLQRGIKPST 617
Query: 257 PVYA 260
+Y+
Sbjct: 618 ILYS 621
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 31/162 (19%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN------SLHVCFVR- 111
S+ P TLS+++ K+G I A +VF+ V YN + C V
Sbjct: 332 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 391
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-- 163
M+ G PD T +L+ A+ + G + +A E+ D G P V + + ++
Sbjct: 392 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 451
Query: 164 --------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
N+MI QG PD +N LI+ C G L
Sbjct: 452 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 493
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK--- 165
F M R +PD T ++L+ + C GK++EA++ ++ KG NP V S M+N
Sbjct: 325 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 384
Query: 166 -------------MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
M+ G PD TFN LI+ G L G+ DV T
Sbjct: 385 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 444
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I A+ + +D+A +++ G
Sbjct: 445 YRTVIAALCRIGKMDDAMEKFNQMIDQG 472
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKG 116
+I+ F K G ++ A ++F + ++ YNS+ +C R M+ K
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 297
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
+P+ T+ L+ + S+G+ +EA +E+ P V + A+
Sbjct: 298 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 357
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ + M +G PD+ ++N ++ G L G+ D T + I A
Sbjct: 358 DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 417
Query: 208 SKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNR 256
+ M+D+A + + + G K +G+ DDA F++M + P++
Sbjct: 418 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 477
Query: 257 PVY 259
Y
Sbjct: 478 YAY 480
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--NPPVRSAKQ 161
+L + R G VPD +++IL+ + C GK +A + L+ +++ G +P V +
Sbjct: 178 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 237
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKS 188
+++ K+G V PDL T+NS++ +CK+
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA 280
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDK 121
GK G D+ + + + A C V+ YN++ C F M+++G PD
Sbjct: 209 GKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 267
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T+ +V+A C + M +A+ FL+++ +K P + A ++ +
Sbjct: 268 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 327
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADV 197
M + +PD+ T + L+ ++CK G++ DV
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 359
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 26/206 (12%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR----- 111
V P T+ + +I+ K G + +E+ + + ++ YN+L +C VR
Sbjct: 344 GVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAA 403
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
M G PDK T+T L++ +C G++ A E QE+SD+G + +++
Sbjct: 404 NDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISG 463
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ K G D E +C+ E GL D T + I A K + F+LL +
Sbjct: 464 LSKSGRSVDSERI------LCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQN 517
Query: 226 DGHKLFPSLGQFD---DAFCFFSEMQ 248
G K P + ++ + FC +M+
Sbjct: 518 KGRK--PGVVTYNVVMNGFCILGQMK 541
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E M+ + L T + +I+ F K G +D A+E+ + + + Y +L
Sbjct: 407 VEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSK 466
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
M+ G PD T+T++++A+C + ++ + L+E+ +KG P V
Sbjct: 467 SGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVT 526
Query: 157 --------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++A ++N M+ G PD T+N L++ CK G++
Sbjct: 527 YNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKV 575
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 88/253 (34%), Gaps = 81/253 (32%)
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
V FN + C+ L NS + M + G PD T+ + C +G++++A E
Sbjct: 279 VVTFNTLMSGMCKASDL--NSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336
Query: 144 LQELSDKGFNP------------------------------------------------- 154
+E+ ++G NP
Sbjct: 337 FEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCR 396
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+++A +V +M G PD T+ +LI+ CK GEL G+ D T
Sbjct: 397 VRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVT 456
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSE 246
I +SK ++ R+LC ++E G L P + DAFC E
Sbjct: 457 YTTLISGLSKSGRSVDSERILCEMMEAG--LEPDNTTYTMVIDAFCKNSDVKTGFKLLKE 514
Query: 247 MQIKTHPPNRPVY 259
MQ K P Y
Sbjct: 515 MQNKGRKPGVVTY 527
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 134 SGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
+G EA++F + D + + SA+ M ++M+++G P + TFN+L+ +CK+ +L
Sbjct: 238 AGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLN- 296
Query: 194 CADVNTNKISIPAVSKEFMIDEAF-RLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
A+ ++ V+ + AF + LC G+ DA F EM+ +
Sbjct: 297 SANALRGLMAKAGVAPDVYTYGAFMQGLCK-----------AGRIQDAVEMFEEMRERGV 345
Query: 253 PPNRPVY 259
PN V+
Sbjct: 346 NPNTVVF 352
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M R+G P+ T+ L+N CS+GK+ EA ++S G P V
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ A++M++ + K+G P++ TFN+LI+ K+G + G+C +V+T
Sbjct: 382 KKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
I +E + EA +L + +G+ L L ++ DA C
Sbjct: 442 YNCLIVGFCREGNVKEARKLAKEM--EGNGLKADLVTYNILVDALC 485
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 108/283 (38%), Gaps = 92/283 (32%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MI 113
+ +++ + K+G +D A+E F++ + + L N + V V+ MI
Sbjct: 162 VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMI 221
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------------ 155
R+ + T +++N C GK ++A + ++++ GF+P
Sbjct: 222 RRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMF 281
Query: 156 ---------------------------------VRSAKQMVNKMIKQGSVPDLETFNSLI 182
V +AK++ +M +QG P++ T+NSLI
Sbjct: 282 KADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLI 341
Query: 183 ETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+C +G+L GL +V T I K+ M+ EA +L ++ + G
Sbjct: 342 NGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG-- 399
Query: 230 LFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
L P++ G+ DDAF S M PN Y
Sbjct: 400 LAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 59/189 (31%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ +GK G +D+A L S+ M+ G P+ T+
Sbjct: 406 TFNTLIDAYGKAGRMDDA----------------FLLRSM------MLDTGVCPNVSTYN 443
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
L+ +C G ++EA++ +E+ G DL T+N L++ +
Sbjct: 444 CLIVGFCREGNVKEARKLAKEMEGNGLK-------------------ADLVTYNILVDAL 484
Query: 186 CKSGEL----------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
CK GE G A++ T + I + ++EA RLL ++E G
Sbjct: 485 CKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKG-- 542
Query: 230 LFPSLGQFD 238
L P+ +D
Sbjct: 543 LIPNRTTYD 551
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +KG + T+ +L+ +C+ GK+ EA L E+ +KG P + + ++M+++G
Sbjct: 503 MEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGF 562
Query: 172 VPDLE 176
+PD++
Sbjct: 563 IPDID 567
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 100/237 (42%), Gaps = 42/237 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
K +E M + + T + II+ ID+A+E+ + ++ C+ ++ +N+L +
Sbjct: 428 KVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGL 487
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C V M+ PD T ++ + C G + +A E L+ +++ G P
Sbjct: 488 CSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQ 547
Query: 157 RSAKQMVNKMIKQG--------------SVPDLETFNSLIETICKSGEL----------- 191
+ +V+ ++K G PDL T+N++I I K+G++
Sbjct: 548 STYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMV 607
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
GL D T + + +E D A R+LC L + G L P ++D F +
Sbjct: 608 SNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMG--LSPDATFYNDILLGFCQ 662
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 55/256 (21%)
Query: 7 AKTSKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIEL----MKPDSLSV 62
A ++ D A+N ++++ H + L + WK +E M + +
Sbjct: 241 AMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAP 300
Query: 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
T + I+ + GL+D A++V + M G +PD
Sbjct: 301 DEVTFNTIVTSLCQQGLVDRAIKVVD----------------------HMSEHGCIPDIV 338
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKM 166
T++ +++ C G++ +A E L L G P A++++ +M
Sbjct: 339 TYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEM 398
Query: 167 IKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMI 213
+ PD TFN++I ++C+ G E G D+ T I + E I
Sbjct: 399 VCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCI 458
Query: 214 DEAFRLLCNLVEDGHK 229
D+A LL NL G K
Sbjct: 459 DDAMELLSNLQSYGCK 474
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 58/252 (23%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----------- 105
PD+ + P +I G + +A+ VF+ C V+ Y+ L
Sbjct: 160 PDTFTFNP-----LIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYR 214
Query: 106 --HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------PV- 156
V M KG PD T+ +L+NA C+ G + EA L +L G P PV
Sbjct: 215 QAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVL 274
Query: 157 ---------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLC 194
+ +++ +M PD TFN+++ ++C+ G E G
Sbjct: 275 KSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCI 334
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCF 243
D+ T + + +D+A LL L G K S+ Q++ A
Sbjct: 335 PDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEEL 394
Query: 244 FSEMQIKTHPPN 255
+EM PP+
Sbjct: 395 MAEMVCSDCPPD 406
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T S I++ G +D+AVE+ ++ ++ C+ + Y ++ +C + M
Sbjct: 339 TYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEM 398
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ PD+ T ++ + C G + A + ++++S+ G NP + +
Sbjct: 399 VCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCI 458
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETIC 186
A ++++ + G PD+ TFN+L++ +C
Sbjct: 459 DDAMELLSNLQSYGCKPDIVTFNTLLKGLC 488
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 45/184 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK-------- 115
T + +I + GL+D A++V + + C ++ YNS+ +C R I
Sbjct: 409 TFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNL 468
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD T L+ CS + +A++ MVN M+
Sbjct: 469 QSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL------------------MVN-MMHSDCP 509
Query: 173 PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD TFN++I ++C+ G E G + +T I + A+ K EA +L
Sbjct: 510 PDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKL 569
Query: 220 LCNL 223
L +
Sbjct: 570 LSGM 573
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 60 LSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----- 114
L V P +++I+ G + +A VF V+ YN++ + R R
Sbjct: 96 LPVVP--CNILIKRLCSGGRVADAERVF---ATLGASATVVTYNTMVNGYCRAGRIEDAR 150
Query: 115 -----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------- 156
F PD T L+ A C G++ +A ++ +G +P V
Sbjct: 151 RLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKA 210
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
R A ++++M +G PD+ T+N LI +C G++
Sbjct: 211 SGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDV 248
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 29/138 (21%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---RS-------------AKQM 162
PD T+ +++ +GKM EA + L+ + G +P RS A +M
Sbjct: 578 PDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRM 637
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+ ++ G PD +N ++ C++ G D +T I + A++
Sbjct: 638 LCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAY 697
Query: 210 EFMIDEAFRLLCNLVEDG 227
E ++DEA +LL NL G
Sbjct: 698 ECLLDEAKQLLVNLCSLG 715
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 34/165 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+KPD T + II K G++D A E+ C+ V+ YN L
Sbjct: 259 LKPDMF-----TYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
+M + P+ T++IL+ C GK+ EA L+ + +KG P S
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A + + MI G +PD+ +N+++ T+CK+G+
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 38/129 (29%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RM K F PD T+ I++ + CS GK+ A + L +L P V +
Sbjct: 183 RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +++++M+ +G PD+ T+N++I +CK G M+D
Sbjct: 243 GVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG----------------------MVD 280
Query: 215 EAFRLLCNL 223
AF ++ NL
Sbjct: 281 RAFEMVRNL 289
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 43/189 (22%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNS--------------LHVCFVRMIRKGFVPDK 121
K+G D A+E+F K C YN+ LH+ + M+ G PD+
Sbjct: 415 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM-ILEMMSNGIDPDE 473
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
T+ +++ C G + EA E L ++ F+P V A ++
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLES 533
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
M+ G P+ T+ LIE I +G ++ + + I A+S + +F+ L
Sbjct: 534 MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAIS-----EYSFKRL----- 583
Query: 226 DGHKLFPSL 234
H+ FP L
Sbjct: 584 --HRTFPLL 590
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 60/188 (31%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
++LMK L+ + +I F + G +D A+E
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET---------------------- 393
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MI G +PD + ++ C +GK +A E +L + G +P S
Sbjct: 394 MISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGD 453
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A M+ +M+ G PD T+NS+I +C+ G M+DE
Sbjct: 454 KIRALHMILEMMSNGIDPDEITYNSMISCLCREG----------------------MVDE 491
Query: 216 AFRLLCNL 223
AF LL ++
Sbjct: 492 AFELLVDM 499
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLET 177
PD + L+N +C ++ +A L + K F+P + M+ + +G + L+
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--- 234
N L+ C+ V T I I A E +DEA +L+ ++ G K P +
Sbjct: 216 LNQLLSDNCQ-------PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK--PDMFTY 266
Query: 235 ----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G D AF +++K P+ Y
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISY 301
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 56/243 (23%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
S + + S++I G+ G ++ A++VFN+ V Y+++ + R
Sbjct: 197 SEWSKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALK 256
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGK--MREAQEFLQELSDKGFNPP---------- 155
M + G P+ T+ +++A C G +++A + E+ +G P
Sbjct: 257 VFQAMKKAGCKPNLITYNTIIDA-CGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAV 315
Query: 156 ------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN----KISIP 205
++++ +M ++G D+ TFN+LI+ +CK G++ L A + T IS
Sbjct: 316 CSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPN 375
Query: 206 AVSKEFMID---------EAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
V+ MID EA L ++ E G + ++ LG+FDDA
Sbjct: 376 VVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACK 435
Query: 246 EMQ 248
+M+
Sbjct: 436 DME 438
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 49/229 (21%)
Query: 66 TLSLIIEEFGKHGL-IDNAVEVFNKCTAFNCQQCVLLYNSL-HVC------------FVR 111
T + II+ GK G+ + A+++F++ + + +NSL VC F
Sbjct: 272 TYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAE 331
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
M R+G D T L++A C G+M A + + K +P V + M++
Sbjct: 332 MQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGC 391
Query: 166 ----------MIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
M + G PD ++N+LI+ K G L C D+ + V+
Sbjct: 392 FEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNA 451
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID + G++ DA C F +M+ + PN Y+
Sbjct: 452 LIDA---------------YGKQGKYKDAACLFDKMKGEGLVPNVLTYS 485
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 28 DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF 87
DIYA+ L R + LI+ M + +K D + T + +I+ +GK G +A +F
Sbjct: 419 DIYAK--LGRFDDALIACKDMERVG--LKADVV-----TYNALIDAYGKQGKYKDAACLF 469
Query: 88 NKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
+K VL Y++L F R G PD ++ L+++ C
Sbjct: 470 DKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKC 529
Query: 135 GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNS-LIETICKSGE 190
G + +A LQE++ G P + + +++ + G LE + + ++ K GE
Sbjct: 530 GLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGE 586
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M+ ++S T S +I+ +GK G + A+ +++ + + YN+L + +
Sbjct: 367 MRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGR 426
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M R G D T+ L++A+ GK ++A ++ +G P V +
Sbjct: 427 FDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSA 486
Query: 162 MVNKMIKQGS----------------VPDLETFNSLIETICKSG 189
+++ K G PD+ ++SLI++ CK G
Sbjct: 487 LIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCG 530
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 51/184 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I+ K G + +A+E+ N+ M+ K F P+ T+T
Sbjct: 379 TFNIMIDGLVKKGYLVSALELLNE----------------------MVAKRFEPNVITYT 416
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVNKMIKQ 169
IL+N +C G++ EA E + +S KG + + A Q+ +M +
Sbjct: 417 ILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGK 476
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ TFNSLI +CK+ ++ G+ A+ T + A I +A
Sbjct: 477 GCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQA 536
Query: 217 FRLL 220
F+L+
Sbjct: 537 FKLV 540
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ KG P + IL++ C +GK+ +A +FLQ++ +G P + + ++N + K
Sbjct: 575 FEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCK 634
Query: 169 QGSV----------------PDLETFNSLIETICKSG 189
G V PD T+N+LI C G
Sbjct: 635 MGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEG 671
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 39/195 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---RMIRKGFVPDK 121
+ LSL + F G+I N V AF L+ +S+ F M+ +G D
Sbjct: 500 EALSLYHDMF-LEGVIANTVTYNTLVHAF------LMRDSIQQAFKLVDEMLFRGCPLDN 552
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNK 165
T+ L+ A C +G + + +E+ KG P + S A + +
Sbjct: 553 ITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQD 612
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
MI +G PD+ T+NSLI +CK G + G+ D T I E M
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGM 672
Query: 213 IDEAFRLLCNLVEDG 227
++A LL V+ G
Sbjct: 673 FNDACLLLYKGVDSG 687
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 98/257 (38%), Gaps = 51/257 (19%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF-NKCTAFNCQQCVLLYNSL--- 105
K ++ MK + L LI++ +GK GL A + + ++C YN +
Sbjct: 120 KLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDI 179
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
F M+ +G P T +++ A C ++ A L++++ G P
Sbjct: 180 LVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPN 239
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------- 191
V A Q++ M PD++TFN +I +C++G +
Sbjct: 240 SVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLD 299
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------GQFDD 239
G D T + + + +DEA LL + L+ +L G+F++
Sbjct: 300 RMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEE 359
Query: 240 AF-CFFSEMQIKTHPPN 255
A ++ M I + P+
Sbjct: 360 AKDLLYNNMVIAGYEPD 376
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M R+G P+ T+ L+N CS+GK+ EA ++S G P V
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ A++M++ + K+G P++ TFN+LI+ K+G + G+C +V+T
Sbjct: 382 KKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
I +E + EA +L + +G+ L L ++ DA C
Sbjct: 442 YNCLIVGFCREGNVKEARKLAKEM--EGNGLKADLVTYNILVDALC 485
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ +GK G +D+A + + V YN L V F R M
Sbjct: 406 TFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM 465
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G D T+ ILV+A C G+ R+A L E+ + G NP + +++ ++G+
Sbjct: 466 EGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNS 525
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
+L+E + G A++ T + I + ++EA RLL ++E G L P
Sbjct: 526 TAALNVRTLME------KKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKG--LIP 577
Query: 233 SLGQFD 238
+ +D
Sbjct: 578 NRTTYD 583
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 108/283 (38%), Gaps = 92/283 (32%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MI 113
+ +++ + K+G +D A+E F++ + + L N + V V+ MI
Sbjct: 162 VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMI 221
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------------ 155
R+ + T +++N C GK ++A + ++++ GF+P
Sbjct: 222 RRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMF 281
Query: 156 ---------------------------------VRSAKQMVNKMIKQGSVPDLETFNSLI 182
V +AK++ +M +QG P++ T+NSLI
Sbjct: 282 KADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLI 341
Query: 183 ETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+C +G+L GL +V T I K+ M+ EA +L ++ + G
Sbjct: 342 NGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG-- 399
Query: 230 LFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
L P++ G+ DDAF S M PN Y
Sbjct: 400 LAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M+ + L T +++++ K G AV + ++ L YN+L + R
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGN 524
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M +KG + T+ +L+ +C+ GK+ EA L E+ +KG P +
Sbjct: 525 STAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDI 584
Query: 162 MVNKMIKQGSVPDLE 176
+ ++M+++G +PD++
Sbjct: 585 LRDEMMEKGFIPDID 599
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++++ K G++ A VF T + + YN+L F M
Sbjct: 193 TFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIM 252
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ KG P +++IL+N +C S ++ EA+ L ++S+K P +
Sbjct: 253 VGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSL 312
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+++ KM G +P+L T++ L++ +CK G L
Sbjct: 313 LEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHL 347
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+M K +P+ T+ L+ C + + EAQE +++ G P +R+ +++ + K
Sbjct: 284 LTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCK 343
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL-------------GLCADVNT 199
G + PD+ +N LI+ + +G+L G+ V T
Sbjct: 344 HGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRT 403
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I + KE + DEA++L + +DG
Sbjct: 404 YNIMIKGLLKEGLSDEAYKLFRKMEDDG 431
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 40/182 (21%)
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSL----HVCFV-----RMIRKGFVPDKRTHTILVNAWC 132
N +++F A N +L NSL H+ F +M + G PD T T L+N C
Sbjct: 110 NQMDLFG--VAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLC 167
Query: 133 SSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLE 176
+ G+++EA E E++ + P V A+ + M ++G P++
Sbjct: 168 NEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIY 227
Query: 177 TFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
T+N+L+ C E+ G V++ I I K IDEA LL +
Sbjct: 228 TYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQM 287
Query: 224 VE 225
E
Sbjct: 288 SE 289
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 32/182 (17%)
Query: 34 TLNRLNLTLISELSMWKTIELMKPD-SLSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N L L S+ + EL K S + P +T S++++ KHG ++ A+++
Sbjct: 298 TYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSM 357
Query: 91 TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ ++LYN L F ++ G P RT+ I++ G
Sbjct: 358 QERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLS 417
Query: 138 REAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSL 181
EA + +++ D GF P +A Q++++M+ + D TF L
Sbjct: 418 DEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKML 477
Query: 182 IE 183
++
Sbjct: 478 LD 479
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 44/192 (22%)
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN---------------- 153
V MI +G PD T+TILVN C G + AQEF E+ +G
Sbjct: 433 VEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKL 492
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTN 200
A + +M+ +G PDL +N +++ +CK G L G+ D T
Sbjct: 493 GDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTY 552
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEM 247
I A + + + + ++ G L PS+ G+ + AF +FSEM
Sbjct: 553 TSIIHAHLENGRLRKGREIFYEMLSKG--LTPSVVTYTVLIHGHAGKGRLERAFIYFSEM 610
Query: 248 QIKTHPPNRPVY 259
Q K PN Y
Sbjct: 611 QEKGILPNVITY 622
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 44/186 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M+ KGF PD + ++V+ C G + EA E LQ++ G P
Sbjct: 505 MLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGR 564
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+R +++ +M+ +G P + T+ LI G L G+ +V T
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFP-------------SLGQFDDAFCFFSEMQI 249
I + K +D+A+ +VE G +FP ++G + +A + +M
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKG--IFPNKYSYTILINENCNMGNWQEALSLYKQMLD 682
Query: 250 KTHPPN 255
+ P+
Sbjct: 683 RGVQPD 688
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 29/142 (20%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHT 125
L+ AVEV+ F + ++ YN+L + + M R+G P+ T+
Sbjct: 214 LMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 273
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQ 169
+L+N G+ +A+ + E+ G +NP + A + +M+ +
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLK 333
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G+ P + T+NS I +CK G +
Sbjct: 334 GASPTVATYNSFIYGLCKLGRM 355
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T +++I G ++ A F++ V+ YNSL +C VR M
Sbjct: 586 TYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEM 645
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG P+K ++TIL+N C+ G +EA +++ D+G P + ++ ++ K +
Sbjct: 646 VEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKL 705
Query: 173 PDLETFNSLIET 184
+ SL+++
Sbjct: 706 QAVRQLESLLDS 717
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+ KG P T+T+L++ G++ A + E+ +KG P V + ++N
Sbjct: 572 FYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCK 631
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSG 189
+M+++G P+ ++ LI C G
Sbjct: 632 VRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMG 668
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 33/167 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ +PD ++ L+ +C G + +A EL P + +
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF---M 212
A+Q+ +MI +G PD+ T+ L+ CK G L ++++EF M
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSL--------------SMAQEFFDEM 470
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ E L LG AF EM K PP+ +Y
Sbjct: 471 LHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIY 517
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAF-------NCQQCV-------LLYNSLHVCFV 110
+ L L+I + K +++ + VF+K NC + + L+ ++ V +
Sbjct: 165 KILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEV-YR 223
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M G P T+ L++++C GK+++ + L E+ +G P + ++N + K+G
Sbjct: 224 TMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG 283
Query: 171 SVPDLETFNSLIETICKSG 189
+ E LI + K+G
Sbjct: 284 ---EFEQAKGLIGEMLKTG 299
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 55/263 (20%)
Query: 52 IELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ +M D P +S +I F K G +D +N+ V+ YNS+
Sbjct: 74 LHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAAL 133
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M++ G +PD T+ +V+ +CSSG+ +EA FL+++ G P V
Sbjct: 134 CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDV 193
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCAD 196
+ A+++ + M K+G P++ T+ +L++ G L GL
Sbjct: 194 VTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 253
Query: 197 VNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
+ N I + A +K+ ++EA + + + G + G+
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+DA +F +M + P VY
Sbjct: 314 VEDAMLYFEQMIDEGLSPGNIVY 336
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
++ HV F ++R+G +PD ++ IL+N C + +EA E L ++D G + P V S
Sbjct: 35 DARHV-FDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92
Query: 161 QMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++N K+G + T+N +++ + +V T I A+ K +D+A +
Sbjct: 93 TVINGFFKEGDLDKTYSTYNEMLDQ-------RISPNVVTYNSIIAALCKAQTVDKAMEV 145
Query: 220 LCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L +V+ G H F S GQ +A F +M+ P+ Y
Sbjct: 146 LTTMVKSGVMPDCMTYNSIVHG-FCSSGQPKEAIVFLKKMRSDGVEPDVVTY 196
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 52/218 (23%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
L+ + + GL NAV + C+ + L+ F +MI +G P + L+
Sbjct: 284 LVFSKMRQQGLNPNAV-TYGAVIGILCKSGRVEDAMLY--FEQMIDEGLSPGNIVYNSLI 340
Query: 129 NAWCSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQGSV 172
+ C+ K A+E + E+ D+G FN + S ++++ + M++ G
Sbjct: 341 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 400
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--- 229
PD+ T+++LI+ C +G++ DEA +LL ++V G K
Sbjct: 401 PDIITYSTLIDGYCLAGKM----------------------DEATKLLASMVSVGMKPDC 438
Query: 230 --------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + + DA F EM+ P+ Y
Sbjct: 439 VTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITY 476
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 35/147 (23%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G PD T++ L++ +C +GKM EA + L + G P + ++N
Sbjct: 391 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCK 450
Query: 165 ------------KMIKQGSVPDLETFNSLIE----------------TICKSGELGLCAD 196
+M G PD+ T+N +++ I KSG +
Sbjct: 451 ISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQ---LE 507
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNL 223
++T I + + K + D+A R+ NL
Sbjct: 508 LSTYNIILHGLCKNKLTDDALRMFQNL 534
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 58/256 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD +S + +I F K G D A +++ V+ YNS+ +
Sbjct: 194 PDVVSY-----TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
M++ G +PD T+ +++ +CSSG+ +EA FL+++ G P V +
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLM 308
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
A+++ + M K+G P++ T+ +L++ G L G+
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCF 243
D I I A +K+ +D+A + + + G + G+ +DA +
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428
Query: 244 FSEMQIKTHPPNRPVY 259
F +M + P VY
Sbjct: 429 FEQMIDEGLSPGNIVY 444
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + K G +D A+ VF+K + Y ++
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412
Query: 106 -------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG- 151
+ F +MI +G P + L++ C+ K A+E + E+ D+G
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472
Query: 152 ------FNPPVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
FN + S ++++ M++ G P++ T+N+LI C +G++
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM----- 527
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
DEA +LL +V G K + + + +DA F
Sbjct: 528 -----------------DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 570
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 571 EMESSGVSPDIITY 584
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G PD ++T ++N + G +A E+ D+G P V + A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMID 214
+++N M+K G +PD T+NS++ C SG+ +G + ++ + V+ ++D
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G P+ T+ L+N +C +GKM EA + L + G P + ++N
Sbjct: 499 FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCK 558
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 559 ISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 618
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + D+A ++ NL
Sbjct: 619 YNIILHGLCKNKLTDDALQMFQNL 642
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYN-------------SLHVCFVRMIRKGFVPDKRTHTI 126
+D AVE+ N+ + V++Y+ S+ F M +G PD +T
Sbjct: 145 VDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTA 204
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
L+++ C GK+++A + ++++G P V + ++N M K+GSV +
Sbjct: 205 LIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRK------ 258
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
E G+ DV T I +S +DEA LL +++ ++ P L F+
Sbjct: 259 NMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFN 310
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 40/138 (28%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+I+ +HG + A V + M +G P+ T+ +L+N
Sbjct: 205 LIDSLCRHGKVKKAARVMDM----------------------MTERGLEPNVVTYNVLIN 242
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM---------------IKQGSV-- 172
+ C G +REA + + +S+KG P V + ++ + + QG
Sbjct: 243 SMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRV 302
Query: 173 -PDLETFNSLIETICKSG 189
PDL TFNS+I +CK G
Sbjct: 303 RPDLMTFNSVIHGLCKIG 320
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 57/206 (27%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFVR-- 111
M+P+ + P +++ G++ A ++FN+ NC+ Y+++ H F
Sbjct: 407 MEPEPVHYIP-----LLKAMCDQGMMGQARDLFNEMDR-NCKLDAAAYSTMIHGAFKSGE 460
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
MI +G +PD T++I +N + SG + A+ L++++ GF
Sbjct: 461 KKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGF--------- 511
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI---SIPAVSKEFMIDEAFR 218
VPD+ F+SLI+ G A +T KI + +K+ +D +
Sbjct: 512 ----------VPDVAVFDSLIQ--------GYGAKGDTEKILELTREMTAKDVALDP--K 551
Query: 219 LLCNLVE------DGHKLFPSLGQFD 238
++ +V +G KL SL FD
Sbjct: 552 IISTIVTSLGASIEGQKLLQSLPGFD 577
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 50/252 (19%)
Query: 34 TLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFN 88
T N L L S L M + + L M V P T + +I K G + A++V
Sbjct: 271 TYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRA 330
Query: 89 KCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSG 135
C+ ++ +N L +R M G PD T++IL+N +C
Sbjct: 331 MMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMR 390
Query: 136 KMREAQEFLQELSDKGFNP-PVR---------------SAKQMVNKMIKQGSVPDLETFN 179
++ A+ +L E+ +G P PV A+ + N+M + + D ++
Sbjct: 391 QVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKL-DAAAYS 449
Query: 180 SLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
++I KSGE GL D T I I +K + A R+L +
Sbjct: 450 TMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTAS 509
Query: 227 GHKLFPSLGQFD 238
G P + FD
Sbjct: 510 G--FVPDVAVFD 519
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T + II K G+++ A E+ T+ C+ V+ YN L F+ M
Sbjct: 244 TYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEM 303
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+G P+K T++IL+++ C G++ EA L+ + +K P S
Sbjct: 304 FSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRL 363
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A +++ MI G +PD+ +N+++ +CK+G
Sbjct: 364 DLAIGIMDYMISNGCLPDIVNYNTILAALCKNG 396
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 29/149 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS----LHVCFVR---------MIRKG 116
I+ K+G + A+E+FNK C V YN+ L C R MI KG
Sbjct: 388 ILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKG 447
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD+ T+ L++ C G + EA L ++ GF P V S A
Sbjct: 448 VDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAI 507
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSG 189
M +MI++G P+ T+ LIE I +G
Sbjct: 508 GMFAEMIEKGCRPNETTYILLIEGIGFAG 536
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 53/230 (23%)
Query: 83 AVEVFNKCTAFNCQQCVLLY-------------NSLHVCFVRMIRKGFVPDKRTHTILVN 129
A++V ++ NC V+ Y N M+ +G +PD T+ ++
Sbjct: 191 ALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIR 250
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
C G + A E + L+ KG P V S +++V +M +G P
Sbjct: 251 GMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 310
Query: 174 DLETFNSLIETICKSGELG-------------LCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ T++ LI ++C+ G + L D + I A+ KE +D A ++
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 370
Query: 221 CNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
++ +G + + +L G + A F++++ PPN Y
Sbjct: 371 DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSY 420
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 49/177 (27%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
RM +GF+PD T+ I++ + C+ K+ A + L +L P V
Sbjct: 162 RMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEG 221
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +++ +M+ +G +PD+ T+N++I +CK G M++
Sbjct: 222 GINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG----------------------MVE 259
Query: 215 EAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
A L+ +L G K F + G++D+ +EM + PN+ Y+
Sbjct: 260 RAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYS 316
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 66/182 (36%)
Query: 121 KRTHTI-LVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------------- 156
+ TH + L+N C +GK E+ FL+ L +KG+ P V
Sbjct: 67 RETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM 126
Query: 157 ---------------------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+A Q++N+M +G +PD+ T+N +I ++C
Sbjct: 127 EILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186
Query: 190 ELGLC-------------ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
+LGL V T I I A E I+EA +LL ++ G L P +
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG--LLPDMYT 244
Query: 237 FD 238
++
Sbjct: 245 YN 246
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 94/210 (44%), Gaps = 49/210 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +++ F K G++ A+++ + A C P+ T+
Sbjct: 204 TYNTMLDSFCKKGMVQEALQLLFQMQAMGCS----------------------PNDVTYN 241
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQ 169
+LVN SG+M +A+E +Q++ G ++P +R A ++ +M+ +
Sbjct: 242 VLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSR 301
Query: 170 GSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
G+VP + T+N+++ +CK G + + K+ V+K M D + N + G
Sbjct: 302 GAVPTVVTYNTIMYGLCKWGRVS-----DARKLLDVMVNKNLMPD---LVSYNTLIYG-- 351
Query: 230 LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ LG +AF F+E++ ++ P+ Y
Sbjct: 352 -YTRLGNIGEAFLLFAELRYRSLAPSVVTY 380
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 35/168 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M+ +GF PD T+ + ++ G ++EA E ++++ G P
Sbjct: 473 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGH 532
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA----DVNTNKISIPAVSKEF 211
+R A+ + +M+ +G P + T+ LI + G L L +++ + ++
Sbjct: 533 LRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 592
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+I+ LC + + D A+ FF+EMQ K PN+ Y
Sbjct: 593 LING----LC-----------KVRKMDQAYNFFAEMQAKGISPNKYTY 625
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 35/165 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
+M+ G VPD T+T +++A +G +R+A+ E+ KG P V + +++
Sbjct: 507 KMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRG 566
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKE 210
+M ++G P++ T+N+LI +CK ++ A++ IS +
Sbjct: 567 RLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYT 626
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+I+E CN LG + +A + +M + P+
Sbjct: 627 ILINEN----CN-----------LGHWQEALRLYKDMLDREIQPD 656
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 89/246 (36%), Gaps = 59/246 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I + + G I A +F + + V+ YN+L R MI+ G
Sbjct: 348 LIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHG 407
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-----------------PVRSA 159
PD T T V +C G + A+E E+ ++G P P + A
Sbjct: 408 PDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSK-A 466
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
M +M+ +G PDL T+N I+ + K G L GL D T I A
Sbjct: 467 FGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHA 526
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHP 253
+ +A L ++ G +FPS+ G+ A F EM K
Sbjct: 527 HLMAGHLRKARALFLEMLSKG--IFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVH 584
Query: 254 PNRPVY 259
PN Y
Sbjct: 585 PNVITY 590
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR--- 111
S +FP T +++I + G + A+ F + V+ YN+L +C VR
Sbjct: 545 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMD 604
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---RSAK 160
M KG P+K T+TIL+N C+ G +EA +++ D+ P RS
Sbjct: 605 QAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLL 664
Query: 161 QMVNKMIKQGSVPDLE 176
+ +NK K V LE
Sbjct: 665 KHLNKDYKLHVVRHLE 680
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 40/230 (17%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
L V T +I + + G I+ A + + + V+ YN++ +
Sbjct: 267 GLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDA 326
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------- 158
M+ K +PD ++ L+ + G + EA EL + P V +
Sbjct: 327 RKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDG 386
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
A ++ ++MIK G PD+ TF + + CK G L + ++ ++
Sbjct: 387 LCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLN------ 440
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + F + +V + LG AF EM + PP+ Y
Sbjct: 441 RGLQPDRFAYITRIVGE-----LKLGDPSKAFGMQEEMLARGFPPDLITY 485
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F+ M+ KG P T+T+L++++ G+++ A E+ +KG +P V + ++N + K
Sbjct: 540 FLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCK 599
Query: 169 ----------------QGSVPDLETFNSLIETICKSG 189
+G P+ T+ LI C G
Sbjct: 600 VRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLG 636
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 62 VFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC--------- 108
+FP + + +I FGK G + ++F++ + Y S+ +C
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEAR 412
Query: 109 --FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------- 158
F M+ KG PD+ T+T L++ +C +G+M+EA ++ +KG P V +
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472
Query: 159 --------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +++++M ++G P++ T+N+LI +CK G +
Sbjct: 473 CKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNI 513
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 27/160 (16%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A ++ L+N +M+ KG P+ T+T LV+ C G++ A E L E+S+
Sbjct: 438 CKAGEMKEAFSLHN-------QMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSE 490
Query: 150 KGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGL 193
KG P V + ++N + K G++ PD T+ ++++ CK GE+
Sbjct: 491 KGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAK 550
Query: 194 CAD---VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+ + +K P + ++ F + ++EDG +L
Sbjct: 551 AHELLRIMLDKGLQPTIVTFNVLMNGF-CMSGMLEDGERL 589
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 27/164 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ KG P T +L+N +C SG + + + ++ + DKG P
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNN 617
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+R+ ++ M QG VPD T+N LI+ CK+ N + KE M+++
Sbjct: 618 MRATIEIYKGMHAQGVVPDTNTYNILIKGHCKA----------RNMKEAWFLHKE-MVEK 666
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F L K F +F++A F EM+ + +Y
Sbjct: 667 GFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIY 710
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 43/231 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+ E+ + G+ N V +N CQ + H ++M +G VPD +++++V+
Sbjct: 239 VFREYSEVGVCWNTVS-YNIILHLLCQLGKV--KEAHSLLIQMEFRGNVPDVVSYSVIVD 295
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
+C ++ + + ++EL KG P V A+Q++ M Q P
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFP 355
Query: 174 DLETFNSLIETICKSG----ELGLCADVNTNKISIPAVSKEFMID---------EAFRLL 220
D + +LI KSG E L ++ KI V+ MI EA +L
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLF 415
Query: 221 CNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
++ G K + +L G+ +AF ++M K PN Y
Sbjct: 416 SEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYT 466
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 78 GLIDNAVEVFNK-----CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWC 132
G++ NA FN C N + + +Y +H +G VPD T+ IL+ C
Sbjct: 597 GIMPNAT-TFNSLMKQYCIRNNMRATIEIYKGMHA-------QGVVPDTNTYNILIKGHC 648
Query: 133 SSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
+ M+EA +E+ +KGF+ S ++ K+
Sbjct: 649 KARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKR 685
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 52/200 (26%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC-------------FVRM 112
S +I +G+ GL + A+ VFN + + ++ YN+ + C F M
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G PD+ T L+ A CS G + EA L + +M N+ I+Q
Sbjct: 331 QRNGVQPDRITFNSLL-AVCSRGGLWEAARNLFD--------------EMTNRRIEQ--- 372
Query: 173 PDLETFNSLIETICKSGELGLC----ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
D+ ++N+L++ ICK G++ L A + +I VS +ID
Sbjct: 373 -DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDG------------- 418
Query: 229 KLFPSLGQFDDAFCFFSEMQ 248
F G+FD+A F EM+
Sbjct: 419 --FAKAGRFDEALNLFGEMR 436
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPD 120
+ K G + A+++ + + ++ V+ YN+L F M R+ +P+
Sbjct: 454 YTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPN 513
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVN 164
T++ L++ + G +EA E +E G N V SA +++
Sbjct: 514 LLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLID 573
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
+M K+G P++ T+NS+I+ +S + AD +N S+P
Sbjct: 574 EMTKEGISPNVVTYNSIIDAFGRSATMDRSADY-SNGGSLP 613
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ F ++GL+D +E+ + M+ G +PD T+T
Sbjct: 330 TFNILVDFFCQNGLVDRVIELLEQ----------------------MLEHGCIPDVITYT 367
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++N +C G + EA L+ +S G P S A+++++ MI+Q
Sbjct: 368 TVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQ 427
Query: 170 GSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEA 216
G +P+ TFN+LI +CK G EL G D+ + I + K +EA
Sbjct: 428 GCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 487
Query: 217 FRLLCNLVEDG 227
LL ++ G
Sbjct: 488 LELLNVMINKG 498
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 52/235 (22%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-- 104
S + ++++ ++ +L++ + G +D VE+ K +F C+ ++ YN+
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220
Query: 105 ---------------------LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
+H +M G PD R + +++ C G A +
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDI 280
Query: 144 LQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
L + G P V A+ ++ +M ++ D TFN L++ C+
Sbjct: 281 LSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQ 340
Query: 188 SG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+G E G DV T I KE ++DEA LL N+ G K
Sbjct: 341 NGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCK 395
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+ P T+ S + + G D +++F+ + LYN++ +C
Sbjct: 498 GITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRA 557
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
F M+ G +P++ T+TIL+ S G +REAQ+ L EL +
Sbjct: 558 IDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 602
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 51/189 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + +I K GL + A+E+ + M+ G PD +
Sbjct: 433 PVTFNTLINFMCKKGLAEQAIELLKQ----------------------MLVNGCSPDLIS 470
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
++ +++ +GK EA E L + +KG P M + + ++G
Sbjct: 471 YSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQ 530
Query: 173 -----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
D +N++I ++CK E G + +T I I ++ E ++
Sbjct: 531 DATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVR 590
Query: 215 EAFRLLCNL 223
EA LL L
Sbjct: 591 EAQDLLSEL 599
>gi|302761046|ref|XP_002963945.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
gi|300167674|gb|EFJ34278.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
Length = 376
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 31/152 (20%)
Query: 60 LSVFPQTLSLIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNSLHVCFVRMIR 114
LS F + L+ +++ + G I A+ V+N+ C A ++ L + M++
Sbjct: 77 LSKFSEALA-VLDVMAERGCIPPAI-VYNQLIDGLCKAGKVEEAFELSTT-------MVK 127
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RS 158
G P T+ L+N C GK EA++FLQE++D G+NP V R+
Sbjct: 128 NGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFRA 187
Query: 159 AKQMVNKMI-KQGSVPDLETFNSLIETICKSG 189
A + ++M+ K G VPD ++ L+ +CK G
Sbjct: 188 AVDVFDEMVSKGGCVPDRASYMPLLIGLCKEG 219
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 38/155 (24%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W L+K +S + T+ L+ E GL++ A V +K + Y L
Sbjct: 20 WTVWSLLKKES--DYNMTIDLLCRE----GLLEQACNVLDKMLEGKYEATTFTYGRLVDG 73
Query: 109 FVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F+R M +G +P + L++ C +GK+ EA E
Sbjct: 74 FLRLSKFSEALAVLDVMAERGCIPPAIVYNQLIDGLCKAGKVEEAFE------------- 120
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ M+K G P L T+NSLI +C G+
Sbjct: 121 ------LSTTMVKNGCSPTLYTYNSLINGLCLQGK 149
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTA-----FN------CQQCVLLYNSLHVCFVRMIRKG 116
+L+I KHG +D+A +VF + + FN CQ+ L+ + V + ++ +KG
Sbjct: 243 NLLISTLSKHGKLDDARKVFRELASPELVHFNSFMSALCQR-KLISEAFQV-YEQLQKKG 300
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
VPD T+TIL+ C G+ +A + P + + ++K G D E
Sbjct: 301 LVPDTYTYTILIGGLCDVGRTDQALSLKDTMIQNNCKPDSVTYGILRAGLLKAGRRTDAE 360
Query: 177 TFNSLIETICKSG 189
+ + +G
Sbjct: 361 QLKAQMPAAAGAG 373
>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Brachypodium distachyon]
Length = 410
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 26/207 (12%)
Query: 41 TLISELSMWKT-------IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93
TLI+ L ++ +ELM+ + + T +L+++ +GK G + NA+ N+
Sbjct: 148 TLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMA 207
Query: 94 NCQQCVLLYNSLHVCFVR---MIR----------KGFVPDKRTHTILVNAWCSSGKMREA 140
Q + YN+L F R MIR +G P K T+TIL++A+ M +A
Sbjct: 208 GYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKA 267
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
E + G VR+ +V+ + +G++ D L ++I GE GL
Sbjct: 268 FEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDAR---KLFQSI---GEKGLQVGNVIY 321
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I +E +A +L+ + + G
Sbjct: 322 DMLIYGYGREGSSYKAMKLIMEMRKKG 348
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F +M G P+ T+ ILV WC +G+ A+ +E+ KG V
Sbjct: 96 FEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCR 155
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A Q++ M ++G P + TFN L++ K+G++
Sbjct: 156 YRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKM 194
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 85/226 (37%), Gaps = 43/226 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I + HG + + +F K + + YN L + F M
Sbjct: 75 TFTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEM 134
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
KG + ++ L+ C KM++A + L+ + +G P V
Sbjct: 135 PAKGITRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKM 194
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+A N+M G P T+N+LI C++ ++ GL T I
Sbjct: 195 SNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTIL 254
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-FPSLGQFDDAFCFFSEMQ 248
I A ++E +D+AF + + + G ++ + G A C M+
Sbjct: 255 IDAFARENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMK 300
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 45 ELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
E M K E+ M+ L V +T +++ G + +A ++F Q ++
Sbjct: 261 ENDMDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVI 320
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
Y+ L + R M +KGFVP+ ++ + + C+ GK EA+ + ++
Sbjct: 321 YDMLIYGYGREGSSYKAMKLIMEMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMV 380
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSVPD 174
G + ++N +QGS D
Sbjct: 381 RAGVQTSESVRQVLLNAKARQGSPTD 406
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 44/211 (20%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
VFP T + +I + K G ++ AV +F N + V+ YN+L F +
Sbjct: 494 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 553
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------- 158
MI + P+ ++ IL+N +C+ G + EA E+ +KGF + +
Sbjct: 554 NELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 613
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCAD 196
A + ++ M+ +G VPD T+N+LI K + GL D
Sbjct: 614 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPD 673
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + + S++ + EA ++ ++E G
Sbjct: 674 VITYNVILNGFSRQGRMQEAELIMLKMIERG 704
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 55/256 (21%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S V P + S +I K+G +D A++ F ++Y L F R
Sbjct: 387 SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMS 446
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M+ +G V D T+ ++N C + EA E E++++G P + ++
Sbjct: 447 EALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 506
Query: 164 NKMIKQGSV----------------PDLETFNSLIETICKSGEL----GLCADVNTNKIS 203
N K G++ PD+ T+N+LI+ CK E+ L D+ + +I
Sbjct: 507 NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY 566
Query: 204 IPAVSKEFMID---------EAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCF 243
+S +I+ EAFRL +VE G K + G A F
Sbjct: 567 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEF 626
Query: 244 FSEMQIKTHPPNRPVY 259
S M +K P+ Y
Sbjct: 627 LSNMLLKGIVPDGITY 642
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M KG PD T+ L+NA+C G + EA E + +S KG P V +
Sbjct: 280 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 339
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID- 214
AK ++++M+K G PD T+N L+ C++ + ++ +I S+ + D
Sbjct: 340 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM-----MDAERIFDEMPSQGVVPDL 394
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+F L L+ G D A +F +M+ P+ +Y
Sbjct: 395 VSFSALIGLLSKN-------GCLDQALKYFRDMKNAGLAPDNVIYT 433
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 37/64 (57%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M G +PD T+ +++N + G+M+EA+ + ++ ++G NP + ++N + Q
Sbjct: 664 KMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQN 723
Query: 171 SVPD 174
++ +
Sbjct: 724 NLKE 727
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 59 SLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S ++P +S ++I + G + A ++++ + ++ N++ + R
Sbjct: 562 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 621
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M+ KG VPD T+ L+N + M A + ++ + G P V + ++
Sbjct: 622 KADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVIL 681
Query: 164 N----------------KMIKQGSVPDLETFNSLI 182
N KMI++G PD T+ SLI
Sbjct: 682 NGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 716
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD + T + +I F K +D A + NK V+ YN + F R
Sbjct: 637 PDGI-----TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 691
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
MI +G PD+ T+T L+N + ++EA E+ +GF P
Sbjct: 692 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ + + P+ +++ F ++ AVEV ++ + + ++ L
Sbjct: 149 AVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCL 208
Query: 106 HVCFVRM------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ +R+ F P+ R T L+ WC GK+ EA+E L ++ + G
Sbjct: 209 LDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLE 268
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------- 190
P + A ++N M K+G P++ + LI+ +C++ +
Sbjct: 269 PDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMR 328
Query: 191 -------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G AD+ T I K MID+ + +L ++ + G
Sbjct: 329 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKG 372
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 31/163 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRM 112
T + +I F K G+ID V + + Y + V +M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG-- 170
R+G PD + +++ C G+++EA E+ G +P V + M+N QG
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFL 463
Query: 171 ----------------SVPDLETFNSLIETICKSGELGLCADV 197
S P T SL+ + + +L + DV
Sbjct: 464 IEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M + LM + + + +++I + K +D V VF+K + Y ++
Sbjct: 164 VEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTV 223
Query: 106 --HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+C F +MI KG P+ +T L++A C+ K +A+E + E+ D+G
Sbjct: 224 IDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGI 283
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
NP + +++ + K+G V + + L+ G +G+ DV T I
Sbjct: 284 NPNIVFFNTILDSLCKEGRVIESKKLFDLL------GHIGVNPDVITYSTLIDGYCLAGK 337
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+D A +LL +V G K + + + +DA F EM+ P+ Y
Sbjct: 338 MDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITY 395
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 43/231 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+ PD++ T + II K +D A+EV NC YNS+ C
Sbjct: 42 VSPDAV-----TYNSIIAALSKAQAMDRAMEVLTVMVMPNC----FTYNSIMHGYCSSGQ 92
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F +M G PD T+ L++ C +GK EA++ + +G P + +
Sbjct: 93 SEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGT 152
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
+++ +G++ ++ +L+ + G+ D + I I A +K+ +DE +
Sbjct: 153 LLHGYASKGALVEMHDLLALMV------QNGMQLDHHVFNILICAYTKQEKVDEVVLVFS 206
Query: 222 NLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + G L P+ LG+ DDA F +M K PN VY
Sbjct: 207 KMRQQG--LTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVY 255
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M+ G PD T++ L+N +C +M +A +E+ G NP +
Sbjct: 348 MVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRR 407
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+AK++ ++ + G+ +L T+N ++ K+ L
Sbjct: 408 TAAAKELYARITESGTQLELSTYNIILMDFAKTNSL 443
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM----- 166
++ KG VPD+ T+ I+++A+C G + A F ++ + F P V + ++N +
Sbjct: 550 LVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGK 609
Query: 167 -----------IKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+++G D+ T+N+LI+++CK G++ GL D T +
Sbjct: 610 LDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNV 669
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
+ A+S+ +EA +L L + G
Sbjct: 670 VLSALSEAGRSEEAHNMLHKLADSG 694
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 52/206 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
MK D ++ T + ++ F + G I A +V TA+
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAY--------------------- 307
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREA---QEFLQELSDK-----GFNPPVRS-------- 158
GF PD RT+ +L C +GK+ EA ++ ++ LS +N V +
Sbjct: 308 -GFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSS 366
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A +++ +M +G P L T N +++++CK G+L GL DV T I
Sbjct: 367 DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLI 426
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKL 230
A K + +AF L+ +V G K+
Sbjct: 427 DAYCKAGNVAKAFTLMDEMVGKGLKM 452
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 42/206 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++++ K G ++ A+ K V+ YN+L + + M
Sbjct: 386 THNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEM 445
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ KG D T ++ C + +A+E L +GF P S
Sbjct: 446 VGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNP 505
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A ++ ++MI++ +P + T+N+LI+ +C+ L GL D T I
Sbjct: 506 EPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNII 565
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK 229
I A KE ++ AFR +VE+ K
Sbjct: 566 IHAYCKEGDLENAFRFHNKMVENSFK 591
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 49/176 (27%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
+MI + +P T+ L+ C +++EA + L EL +KG P
Sbjct: 514 QMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEG 573
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ +A + NKM++ PD+ T N+L+ +C G+L D
Sbjct: 574 DLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKL----------------------D 611
Query: 215 EAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
+A +L + VE G K L S+ G D A FF +M++K P+ Y
Sbjct: 612 KALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTY 667
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSA 159
G PD T+ L+NA C G + EA+ L + G P ++ A
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQA 297
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIP-AVSKEFMID 214
++V M G PDL T+N L +C++G++ L ++ ++P V+ ++D
Sbjct: 298 TKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVD 357
Query: 215 EAFRLLCN 222
F+ C+
Sbjct: 358 ACFKWRCS 365
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 53/247 (21%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGFV------ 118
++++ F K G + NA VF++ + + V+ +N+L C + + +GFV
Sbjct: 229 FNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVME 288
Query: 119 -----PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV- 172
PD T++ L+N C ++ EA E+ + G P + +++ K G +
Sbjct: 289 SERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKID 348
Query: 173 ---------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
PDL T+N+LI +C+ G+L G D T +
Sbjct: 349 LALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTHP 253
K+ +D A + +VE+G +L F +L G+ DA +M H
Sbjct: 409 DGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK 468
Query: 254 PNRPVYA 260
P+ P Y
Sbjct: 469 PDDPTYT 475
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M G VP+ T T L++ C GK+ A + + D+G P
Sbjct: 319 FDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCR 378
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS--------- 203
++ A++++N+MI G PD TF +L++ CK G++ ++ +
Sbjct: 379 DGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVA 438
Query: 204 ----IPAVSKEFMIDEAFRLLCNLVEDGHKL-FPSLGQFDDAFC 242
I + ++ + +A R+L +++ GHK P+ D FC
Sbjct: 439 FTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFC 482
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ KHG ID A+ F + ++ YN+L R M
Sbjct: 333 TFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEM 392
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
I GF PDK T T L++ C G M A E + ++G + V
Sbjct: 393 IGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRV 452
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
R A++M+ M+ G PD T+ +I+ CK G++ + A +
Sbjct: 453 RDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKL 493
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
RM+ +G D T L++ C G++R+A+ L+++ G P
Sbjct: 426 RMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKG 485
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V+ +++ +M + G VP + T+N+L+ CK G++
Sbjct: 486 DVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQM 522
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G PD T+T++++ +C G ++ + L+E+ G P V + ++N KQG
Sbjct: 462 MLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQ 521
Query: 172 ----------------VPDLETFNSLIETICKSG 189
VP+ TFN L++ CK G
Sbjct: 522 MKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHG 555
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 55/248 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S +I F G + +A+++FNK N + V +N L F + M
Sbjct: 262 TYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+++G P+ T+ L++ +C ++ +A+ ++ G NP ++S M+N
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+M ++ +PD+ T++SLI+ + KSG + G+ ++ T
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSI 441
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTH 252
+ A+ K +D+A LL + G + L L G+ +DA F ++ +K +
Sbjct: 442 LDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGY 501
Query: 253 PPNRPVYA 260
N VYA
Sbjct: 502 --NLDVYA 507
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M RK +PD T++ L++ SG++ A + + ++ D+G P
Sbjct: 388 FKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCK 447
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
V A ++ K +G PD+ T++ LI+ +C+SG+L G DV
Sbjct: 448 THQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYA 507
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I E + +EA LL + ++G
Sbjct: 508 YTIMIQGFCVEGLFNEALALLSKMEDNG 535
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S +I+ K G I A+++ ++ + YNS+ +C +
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKF 461
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KGF PD T++IL+ C SGK+ +A++ ++L KG+N V + M+ +G
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEG-- 519
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
FN + + K + G D T +I I ++ K+ D A +LL ++ G
Sbjct: 520 ----LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG 570
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 29/198 (14%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
L+ V ++N C+ V L N F M+ KG PD T++ L++ +C GK++
Sbjct: 220 LVQPNVVMYNTIIDSMCK--VKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLK 277
Query: 139 EAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLI 182
+A + ++ + P V + K + + M+KQG P+ T+NSL+
Sbjct: 278 DAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
+ C E+ + N ++ V+ + +++ ++ N F + +FD+A
Sbjct: 338 DGYCLVKEVNKAKSI-FNTMAQGGVNPDI---QSYSIMIN-------GFCKIKKFDEAMN 386
Query: 243 FFSEMQIKTHPPNRPVYA 260
F EM K P+ Y+
Sbjct: 387 LFKEMHRKNIIPDVVTYS 404
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 43/171 (25%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F ++++ G+VPD T T L C G++++A F ++ GF+
Sbjct: 143 FAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFH--------------- 187
Query: 169 QGSVPDLETFNSLIETICKSGE----LGLCADVNTNKIS---------IPAVSKEFMIDE 215
D ++ +LI +CK GE L L V+ N + I ++ K +++E
Sbjct: 188 ----FDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNE 243
Query: 216 AFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
AF L +V G F LG+ DA F++M ++ P+
Sbjct: 244 AFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPD 294
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 45/230 (19%)
Query: 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ + + P+ +++ F ++ AVEV ++ + + ++ L
Sbjct: 149 AVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCL 208
Query: 106 HVCFVRM------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ +R+ F P+ R T L+ WC GK+ EA+E L ++ + G
Sbjct: 209 LDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLE 268
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------- 190
P + A ++N M K+G P++ + LI+ +C++ +
Sbjct: 269 PDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMR 328
Query: 191 -------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
G AD+ T I K MID+ + +L ++ + G + PS
Sbjct: 329 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKG--VMPS 376
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 31/163 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRM 112
T + +I F K G+ID V + + Y + V +M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG-- 170
R+G PD + +++ C G+++EA E+ G +P V + M+N QG
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFL 463
Query: 171 ----------------SVPDLETFNSLIETICKSGELGLCADV 197
S P T SL+ + + +L + DV
Sbjct: 464 IEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506
>gi|255685900|gb|ACU28439.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 167
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 4 VMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRG 63
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD + TI + ++C + + A L +S +G V + A
Sbjct: 64 ITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEAY 123
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
++ KM+ G L TFN L+ +CK G++ C
Sbjct: 124 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 157
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 48/191 (25%)
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
YN L CF R M++ G+ PD T + L+N +C S ++ +A + ++
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 177
Query: 149 DKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-- 190
+ G+ P A +V++M+++G PDL T+ +++ +CK G+
Sbjct: 178 EMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDID 237
Query: 191 --LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
L L + KI EA ++ N + DG DDAF F++M+
Sbjct: 238 LALSLLKKMEKGKI------------EADVVIYNTIIDG---LCKYKHIDDAFALFNKME 282
Query: 249 IKTHPPNRPVY 259
K P+ Y
Sbjct: 283 TKGIRPDVFTY 293
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 45/209 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV-----CFVRM 112
T ++ K G ID A+ + K + V++YN++ H+ F +M
Sbjct: 222 TYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM 281
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG PD T+ L++ C+ G+ +A L + ++ NP V +
Sbjct: 282 ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKL 341
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG---------ELGLCADVNTNKISIPAV 207
A+++ ++MIK+ PD+ T++SLI C EL + D N ++ +
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
K F +A R VE+G +LF + Q
Sbjct: 402 IKGFC--KAKR-----VEEGMELFREMSQ 423
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 31/158 (19%)
Query: 63 FPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HV 107
FP T + +I+ F K ++ +E+F + + + YN+L
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
F +M+ G PD T++IL++ C GK+ +A + L P + + M+ M
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511
Query: 168 KQGSV----------------PDLETFNSLIETICKSG 189
K G V P++ + ++I C+ G
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 549
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 33/192 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGFV----- 118
T + +I+ + G D A ++F K + ++ Y+ L +C + K V
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491
Query: 119 ------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
PD T+ I++ C +GK+ + + LS KG P V
Sbjct: 492 QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK 551
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A + +M + G++PD +N+LI + G+ A++ S V I
Sbjct: 552 EEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTIS-- 609
Query: 217 FRLLCNLVEDGH 228
++ N++ DG
Sbjct: 610 --MVINMLHDGR 619
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 44/192 (22%)
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN---------------- 153
V MI +G PD T+TILVN C G + AQEF E+ +G
Sbjct: 433 VEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKL 492
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTN 200
A + +M+ +G PDL +N +++ +CK G L G+ D T
Sbjct: 493 GDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTY 552
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEM 247
I A + + + + ++ G L PS+ G+ + AF +FSEM
Sbjct: 553 TSIIHAHLENGRLRKGREIFYEMLSKG--LTPSVVTYTVLIHGHAGKGRLERAFIYFSEM 610
Query: 248 QIKTHPPNRPVY 259
Q K PN Y
Sbjct: 611 QEKGILPNVITY 622
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 29/142 (20%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHT 125
L+ AVEV+ F + ++ YN+L + + M R+G P+ T+
Sbjct: 214 LMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 273
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQ 169
+L+N G+ +A+ + E+ G +NP + A + +M+ +
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLK 333
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G+ P + T+NS I +CK G +
Sbjct: 334 GASPTVATYNSFIYGLCKLGRM 355
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T +++I G ++ A F++ V+ YNSL +C VR M
Sbjct: 586 TYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEM 645
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+ KG P+K ++TIL+N C+ G +EA +++ D+G P
Sbjct: 646 VEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQP 687
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 39/227 (17%)
Query: 54 LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
L K S V P T + II ++G + E+F + + V+ Y L
Sbjct: 537 LQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAG 596
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
+ F M KG +P+ T+ L+N C +M +A F E+ +KG P S
Sbjct: 597 KGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYS 656
Query: 159 AKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
++N +M+ +G PD T ++L++ + K +L +T
Sbjct: 657 YTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVHGTSTMPT 716
Query: 203 S-IPAVSKEFMIDEAFRLLCNLVEDGH-------KLFPSLGQFDDAF 241
+ + +S+ A + ++ E+GH + P+ QF D +
Sbjct: 717 AKVDLLSQTVGAATALTSVSSIAENGHITKEQLRQNIPTKKQFVDPY 763
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 93/255 (36%), Gaps = 77/255 (30%)
Query: 30 YAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTL---SLIIEEFGKHGLIDNAVEV 86
YA R + L L S + L + FP L +++++ K G ++ A E+
Sbjct: 482 YATRIVGELKLGDTS-----RAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASEL 536
Query: 87 FNKCTAFNCQQCVLLYNSL---HV----------CFVRMIRKGFVPDKRTHTILVNAWCS 133
K + + Y S+ H+ F M+ KG P T+T+L++
Sbjct: 537 LQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAG 596
Query: 134 SGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
G++ A + E+ +KG +P++ T+NSLI +CK +
Sbjct: 597 KGRLERAFIYFSEMQEKGI-------------------LPNVITYNSLINGLCKVRRM-- 635
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP-------------SLGQFDDA 240
D+A+ +VE G +FP ++G + +A
Sbjct: 636 --------------------DQAYNFFAEMVEKG--IFPNKYSYTILINENCNMGNWQEA 673
Query: 241 FCFFSEMQIKTHPPN 255
+ +M + P+
Sbjct: 674 LSLYKQMLDRGVQPD 688
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF-------NCQQCV-------LLYNS 104
S V + L L+I + K +++ + VF+K NC + + L+ +
Sbjct: 159 SSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKA 218
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
+ V + M G P T+ L++++C GK+++ + L E+ +G P + ++N
Sbjct: 219 VEV-YRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLIN 277
Query: 165 KMIKQGSVPDLETFNSLIETICKSG 189
+ K+G + E LI + K+G
Sbjct: 278 GLSKKG---EFEQAKGLIGEMLKTG 299
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 27/164 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ +PD ++ L+ +C G + +A EL P + +
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A+Q+ +MI +G PD+ T+ L+ CK G L + + + E + +
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEF------FDEMLHEGLELD 478
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ +V + LG AF EM K PP+ +Y
Sbjct: 479 SYAYATRIVGE-----LKLGDTSRAFSLQEEMLAKGFPPDLIIY 517
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 30/238 (12%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T +++I+ + G++D A+ +FN+ + V+ Y ++
Sbjct: 378 VDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTV 437
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G VPDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 438 IAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 497
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+ ++N + K G V D + L + GL D + +
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNV------GLHPDAVVYNMLMDGYCLVGK 551
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+++A R+ +V G + + +G+ D+ F EM K P+ +Y
Sbjct: 552 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 609
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R+ +PD L+ + C GK++EA++ ++ KG NP V S M+N
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYAT 373
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G + D+ L+ G+ G+ + T + I A + M+D+A + + + G
Sbjct: 374 KGCLVDMTDLFDLM-----LGD-GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 427
Query: 229 K-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K +G+ DDA F++M + P++ Y
Sbjct: 428 KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAY 469
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 32/141 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKG 116
+I+ F K G ++ A ++F + ++ Y+S+ +C R M+ KG
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
+PD T+ L+ + S+G+ +EA +E M +Q +PD+
Sbjct: 287 VLPDNWTYNNLIYGYSSTGQWKEAVRVFKE-------------------MRRQSILPDVV 327
Query: 177 TFNSLIETICKSGELGLCADV 197
N+L+ ++CK G++ DV
Sbjct: 328 ALNTLMGSLCKYGKIKEARDV 348
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--NPPVRSAKQ 161
+L + R G VPD ++ IL+ + C+ GK +A + L+ +++ G +P V +
Sbjct: 167 ALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNT 226
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKS 188
+++ K+G V PDL T++S++ +CK+
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKA 269
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRM 112
T S+++ K+ D A+ +F + A N + ++ N++ F +
Sbjct: 643 TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 702
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G VP T++I++ G + EA++ + + G P R +V +++K+ +
Sbjct: 703 SRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEI 762
Query: 173 PDLETFNSLIE 183
+ S I+
Sbjct: 763 VRAGAYLSKID 773
>gi|260780324|gb|ACX50708.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780342|gb|ACX50717.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780358|gb|ACX50725.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780388|gb|ACX50740.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 21/175 (12%)
Query: 86 VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
VF+ C+Q L N + F MIRKG P+ +T+L++ + SG + +A L
Sbjct: 19 VFSLVIGGLCKQGKL--NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLH 76
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISI 204
+ D+GF P V + +VN + K G V + L+ F + C+ GL + I
Sbjct: 77 RMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQT-----CRFN--GLAINSMFYSSLI 129
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ K IDEA RL + E G + L +L G+ D+A F M+
Sbjct: 130 DGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 184
>gi|255685894|gb|ACU28436.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685902|gb|ACU28440.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685904|gb|ACU28441.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685906|gb|ACU28442.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685908|gb|ACU28443.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685914|gb|ACU28446.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 172
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 9 VMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRG 68
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD + TI + ++C + + A L +S +G V + A
Sbjct: 69 ITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEAY 128
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
++ KM+ G L TFN L+ +CK G++ C
Sbjct: 129 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 162
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 53/192 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S +I F G + +AV++FNK MI + PD T
Sbjct: 264 TYSALISGFFTVGKLKDAVDLFNK----------------------MISENIKPDVYTFN 301
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------VRSAKQMVNKMIK 168
ILV+ +C SGK+ A + + E+ D+G PP V A ++ K+
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRG-QPPNIVTYSSILDALCKTHRVDKAVALLTKLKD 360
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
QG P++ T+ LI+ +C SG+L G V T + K+ + DE
Sbjct: 361 QGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDE 420
Query: 216 AFRLLCNLVEDG 227
A LL + E+G
Sbjct: 421 ASALLSKMEENG 432
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 34/167 (20%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-- 108
E +KPD T +++++ F K G I A+++ ++ ++ Y+S+ +C
Sbjct: 291 ENIKPDV-----YTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKT 345
Query: 109 ---------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS- 158
++ +G P+ T+TIL++ C+SGK+ +A+ ++L KG++ V +
Sbjct: 346 HRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTY 405
Query: 159 ---------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++KM + G +PD +T+ + ++ K GE
Sbjct: 406 IVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGE 452
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 43/168 (25%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ M+ KG P+ T++ L++ + + GK+++A + + NKMI
Sbjct: 250 YSEMVSKGISPNVVTYSALISGFFTVGKLKDAVD-------------------LFNKMIS 290
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+ PD+ TFN L++ CKSG++ G ++ T + A+ K +D+
Sbjct: 291 ENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDK 350
Query: 216 AFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTH 252
A LL L + G + L L G+ +DA F ++ +K +
Sbjct: 351 AVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGY 398
>gi|255685976|gb|ACU28477.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685978|gb|ACU28478.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685980|gb|ACU28479.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685982|gb|ACU28480.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685984|gb|ACU28481.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 171
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 8 VMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRG 67
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD + TI + ++C + + A L +S +G V + A
Sbjct: 68 ITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEAY 127
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
++ KM+ G L TFN L+ +CK G++ C
Sbjct: 128 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 161
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 111/275 (40%), Gaps = 76/275 (27%)
Query: 11 KEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLI 70
K + AA H+ I+ H YA+R + + + +E+ + + PD + T S +
Sbjct: 432 KSNGIAANCHVFTILIH-AYAKRGMVDDAMLIFTEMQQ----QGVSPDVV-----TYSTV 481
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
I F + G + +A+E FN+ M+ +G P+ ++ ++
Sbjct: 482 ISTFSRMGRLTDAMEKFNQ----------------------MVARGIQPNTAVYSSIIQG 519
Query: 131 WCSSGKMREAQEFLQELSDKGF-NPPVRSAKQMVNKMIKQGSV----------------P 173
+C G + +A+E + E+ +KG P + ++N + K G V P
Sbjct: 520 FCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERP 579
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC--------NLVE 225
+ TFNSLI+ C G++ K F I +A ++ N +
Sbjct: 580 GVITFNSLIDGYCLVGKM----------------DKAFKILDAMEVVGVEPDIVTYNTLL 623
Query: 226 DGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
DG+ F + G+ +D F EMQ K PN Y
Sbjct: 624 DGY--FKN-GRINDGLTLFREMQRKGVKPNTVTYG 655
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 37/235 (15%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----- 105
T + +KPD + T +LII+ K +D A V + T Q + Y+ +
Sbjct: 292 TRQGVKPDVV-----TYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYA 346
Query: 106 --------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
F M ++G +P+ T + + C G+ +EA EF ++ KG P +
Sbjct: 347 TLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIF 406
Query: 158 SAKQMVNKMIKQGSVPDL-ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
S +++ +G D+ FNS+ G+ A+ + I I A +K M+D+A
Sbjct: 407 SYCTLLHGYASEGCFADMIGLFNSMKSN-------GIAANCHVFTILIHAYAKRGMVDDA 459
Query: 217 FRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ + + G F +G+ DA F++M + PN VY+
Sbjct: 460 MLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYS 514
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 50/216 (23%)
Query: 88 NKCTAFNCQQCVLLYN----SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
++ TA +C+ N +++V RM G VP+ +++I++ A C + + A +
Sbjct: 191 DQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDL 250
Query: 144 LQELSDKG-----------------FNPP-VRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
LQ ++ +G FN A + ++M +QG PD+ T+N +I+ +
Sbjct: 251 LQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDAL 310
Query: 186 CKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
CK+ + G D T I + + EA ++ + + G L P
Sbjct: 311 CKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRG--LIP 368
Query: 233 SL-------------GQFDDAFCFFSEMQIKTHPPN 255
++ G+ +A FF M K H P+
Sbjct: 369 NIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPD 404
>gi|260780314|gb|ACX50703.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780316|gb|ACX50704.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780320|gb|ACX50706.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780322|gb|ACX50707.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780326|gb|ACX50709.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780328|gb|ACX50710.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780334|gb|ACX50713.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780336|gb|ACX50714.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780350|gb|ACX50721.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780354|gb|ACX50723.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780356|gb|ACX50724.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780360|gb|ACX50726.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780362|gb|ACX50727.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780364|gb|ACX50728.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780366|gb|ACX50729.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780368|gb|ACX50730.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780370|gb|ACX50731.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780372|gb|ACX50732.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780374|gb|ACX50733.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780376|gb|ACX50734.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780378|gb|ACX50735.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780380|gb|ACX50736.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780382|gb|ACX50737.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780384|gb|ACX50738.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780386|gb|ACX50739.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780390|gb|ACX50741.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780392|gb|ACX50742.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 21/175 (12%)
Query: 86 VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
VF+ C+Q L N + F MIRKG P+ +T+L++ + SG + +A L
Sbjct: 19 VFSLVIGGLCKQGKL--NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLH 76
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISI 204
+ D+GF P V + +VN + K G V + L+ F + C+ GL + I
Sbjct: 77 RMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQT-----CRFN--GLAINSMFYSSLI 129
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ K IDEA RL + E G + L +L G+ D+A F M+
Sbjct: 130 DGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 184
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 108/272 (39%), Gaps = 35/272 (12%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIE 72
D A H NI+ + TL T + M LM D + ++++
Sbjct: 340 DSMLAKGHKLNIISYS-----TLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVN 394
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKGFVP 119
+ K G++ A+ +F VL Y ++ F RM I KG P
Sbjct: 395 GYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEP 454
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
+ + L+ +C+ G + +A+E + E+ +KG P + S ++N + K+G V + +
Sbjct: 455 NFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQ--- 511
Query: 180 SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL- 234
+ + I ++GE ADVN I + EAFR+ +V G + + +L
Sbjct: 512 RIFDMIIRTGEK---ADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLV 568
Query: 235 ------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
G+ DD F E+ K P Y
Sbjct: 569 NGCCKNGRIDDGLILFRELLHKGVKPTTFTYG 600
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 97/245 (39%), Gaps = 53/245 (21%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIR 114
S ++ K G + A ++F++ T V+ YNS+ +C R M+
Sbjct: 215 STVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG 274
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
G PD T+ L++ + + G+ ++A +E++ +G P +
Sbjct: 275 NGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEE 334
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A++ + M+ +G ++ ++++L+ +G L G+ + + I +
Sbjct: 335 AREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVN 394
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPP 254
+K M+ EA + ++ + G F +G DDA F+ M K P
Sbjct: 395 GYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEP 454
Query: 255 NRPVY 259
N VY
Sbjct: 455 NFAVY 459
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 37/174 (21%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
++ V F RM G VPD +++ ++ + C G+ + A + L+ +G P
Sbjct: 157 AVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYST 216
Query: 156 ----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNK 201
V A + ++M +QG P++ T+NS+I +CK+ + G+ + N
Sbjct: 217 VVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNG 276
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ V+ +I + +LGQ+ A F EM + PN
Sbjct: 277 VQPDNVTYNTLIHG---------------YSTLGQWKQAVRMFKEMTSRGVIPN 315
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M+ G PD T+ LVN C +G++ + +EL KG P
Sbjct: 552 MVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGR 611
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+AK+M +MI+ G + T++ L+ +C++
Sbjct: 612 TAAAKEMFQEMIESGIAVTIPTYSILLTGLCRN 644
>gi|357483069|ref|XP_003611821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513156|gb|AES94779.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 749
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ +EL+K + + V ++ ++ + G + A+E F++ F + +YN++
Sbjct: 69 WEALELLKKNGVLVTSDSVRALVRSYSHMGYTEKAIESFSRMREFGIEPDAHMYNTILRD 128
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+ M++ P+ T+ +L++ +C G+++ AQE L E+ G P
Sbjct: 129 VLNEKLLELALALYTTMLKSNVEPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPC 188
Query: 156 VRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V S A ++ N M + PD+ + N ++ CK G L
Sbjct: 189 VLSTTSILYGCCQANNVDEAHKLFNDMKETSYPPDMISCNVVLNGFCKMGRL 240
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 29/187 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I+ F K G + A E+ ++ CVL S+ H F M
Sbjct: 156 TYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLFNDM 215
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+ PD + +++N +C G++ EA F+ + + GF+ S ++N
Sbjct: 216 KETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYASLINAFFKARRY 275
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
KM K+G VPD+ + +I + K G +G A + I + +
Sbjct: 276 REAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDSYCYNAV 335
Query: 217 FRLLCNL 223
+ LC++
Sbjct: 336 IQGLCDV 342
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 47/137 (34%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
Y H C+ +M ++G VPD + I++ G++ EA + L+E++ G P
Sbjct: 275 YREAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDSYCYNA 334
Query: 156 -----------------------------------------VRSAKQMVNKMIKQGSVPD 174
V A+++ N+M K G P
Sbjct: 335 VIQGLCDVDLLNRAQSLSLEISEHNVCTHTILICEMCKRGMVAEAQELFNQMEKLGCEPS 394
Query: 175 LETFNSLIETICKSGEL 191
+ TFN+LI +CK+ L
Sbjct: 395 VVTFNTLINGLCKAKNL 411
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG-----FV 118
T +++I E K G++ A E+FN+ C+ V+ +N+L +C + + K +
Sbjct: 362 THTILICEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKAKNLEKAKNLFCKL 421
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-PDLET 177
R H++ ++ SG++ ++ L++ + + A +++ + G V PD+ T
Sbjct: 422 EVGRRHSLHLSLSQGSGQVSDSARLLKKAKEMCEAGQILRAYKLITDL--AGEVKPDIIT 479
Query: 178 FNSLIETICKSGEL 191
+N L+ +C E+
Sbjct: 480 YNILLNALCMDREV 493
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-----------------SAKQ 161
PD T+ IL+NA C ++ A F + L KG+ P A +
Sbjct: 475 PDIITYNILLNALCMDREVNAAYNFFEFLQKKGYPSPDNVTYGTIIKGLFMVDREDEAFK 534
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ +M K GS P L + +L+ +C+ ++
Sbjct: 535 VFQRMQKTGSEPTLSVYRTLMTCLCRKSKV 564
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 48/225 (21%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMI 113
S++I+ K G + A + T + V YN+L F MI
Sbjct: 304 FSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMI 363
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
KG +PD + +ILVN +C + ++ EA++ E++ +G P S
Sbjct: 364 SKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPL 423
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFMI 213
A+++ M G P+L T++ L++ + K G L GL + + + V+ MI
Sbjct: 424 EAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMI 483
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
D +C G+F DA F+E+ +K PN V
Sbjct: 484 DG----MCK-----------YGKFKDARELFAELSVKGLQPNNWV 513
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 95/251 (37%), Gaps = 57/251 (22%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
+ S+II+ + G +++ C+ V++YN++ +C F +
Sbjct: 197 HSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCK 256
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G +P T+T L++ + G+ +EA L E+ P + + +++ M K+G
Sbjct: 257 MKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGE 316
Query: 172 V----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V PD+ T+N+L+ C E+ G DV + I
Sbjct: 317 VSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSI 376
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEMQI 249
+ K IDEA +L + G L P ++ C F +M
Sbjct: 377 LVNGYCKAKRIDEAKQLFDEMTHRG--LIPDTVSYNTLISGLCQARRPLEAEELFKDMHS 434
Query: 250 KTHPPNRPVYA 260
+PPN Y+
Sbjct: 435 NGYPPNLVTYS 445
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 21/151 (13%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++I+ G P+ T + L+N +C GK+ A E + +G+ P V S ++ + + G
Sbjct: 151 KIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVG 210
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+ +I+ + +G DV + + K+ +++EA + C + G +
Sbjct: 211 KTTE------VIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKM--KGTGI 262
Query: 231 FPS-------------LGQFDDAFCFFSEMQ 248
P+ LG++ +AF +EM+
Sbjct: 263 LPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK 293
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S++++ K G +D A+ +F M G PD T+
Sbjct: 443 TYSILLDCLSKQGYLDQAMGLFRA----------------------MENSGLKPDLVTYN 480
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP 154
I+++ C GK ++A+E ELS KG P
Sbjct: 481 IMIDGMCKYGKFKDARELFAELSVKGLQP 509
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ F ++GL+D +E+ + M+ G +PD T+T
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQ----------------------MLSHGCMPDVITYT 395
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++N +C G + EA L+ +S G P S A++++++MI+Q
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455
Query: 170 GSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+ TFN+LI +CK G EL G D+ + I + K +EA
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515
Query: 217 FRLLCNLVEDG 227
LL +V G
Sbjct: 516 LELLNVMVNKG 526
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 103/294 (35%), Gaps = 88/294 (29%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS----- 104
+ +E M ++ +L++ + G +D AV + K F C+ ++ YN+
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226
Query: 105 -------------------------------------------LHVCFVRMIRKGFVPDK 121
+H +M G PD
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
R + +++ C G + A E L + G P V + A++++++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346
Query: 166 MIKQGSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFM 212
M ++ D TFN L++ C++G EL G DV T I KE +
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406
Query: 213 IDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
IDEA LL ++ G K S G++ DA S+M + PPN
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPN 460
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+ P T+ S I + G ++ +++F+ + +LYN++ +C
Sbjct: 526 GISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRA 585
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
F M+ G +P++ T+T+L+ S G +EAQE L EL +G
Sbjct: 586 IDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 57/230 (24%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY-------------- 102
P++ + FP ++ G I +A+EV ++ + C +Y
Sbjct: 109 PNAYTFFP-----VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---- 158
NS+ V M KG D +++NA C G + EA L++L+ G + S
Sbjct: 164 NSVRV-LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV 222
Query: 159 ------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGL 193
++++++M++ P++ TFN+LI +C++G E G
Sbjct: 223 LKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGC 282
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCF 243
D+ I + KE ++ A +L PS G + C+
Sbjct: 283 TPDIRMYATIIDGICKEGHLEVANEIL--------NRMPSYGLKPNVVCY 324
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 51/193 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + +I K GL++ A+E+ + M+ G PD +
Sbjct: 461 PVTFNTLINFLCKKGLVEQAIELLKQ----------------------MLVNGCSPDLIS 498
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
++ +++ +GK EA E L + +KG +P + + ++G V
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558
Query: 173 -----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
D +N++I ++CK E G + +T + I ++ E +
Sbjct: 559 DTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAK 618
Query: 215 EAFRLLCNLVEDG 227
EA LL L G
Sbjct: 619 EAQELLSELCSRG 631
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 34/165 (20%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
KPD + T +++I+ F K G +D A+ K ++ CQ V+ +N + +C
Sbjct: 238 KPDVV-----TYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRW 292
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
M+RKG P T IL+N C G + +A L+ + G P RS +
Sbjct: 293 MDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 352
Query: 163 VNK----------------MIKQGSVPDLETFNSLIETICKSGEL 191
+ M+ +G PD+ T+N L+ +CK G++
Sbjct: 353 IQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKV 397
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +G PD T+ IL+ A C GK+ +A L +LS KG +P + S +++ ++K G
Sbjct: 372 MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGK 431
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
E L+E +C GL D+ T + +S+E + EA +
Sbjct: 432 A---ELAVELLEEMCYK---GLKPDLITCTSVVGGLSREGKVHEAIK 472
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 77/193 (39%), Gaps = 44/193 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M KG PD T+ +L+ +C G++ EA FL++L G V S
Sbjct: 229 FNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCS 288
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---------NTNKIS 203
A +++ M+++G P + TFN LI +C+ G LG +V N S
Sbjct: 289 GGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRS 348
Query: 204 IPAVSKEFM----IDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSE 246
+ + F ID A L +V G +P + G+ DDA S+
Sbjct: 349 FNPLIQGFCNRKGIDRAIEHLEIMVSRG--CYPDIVTYNILLTALCKDGKVDDAVVILSQ 406
Query: 247 MQIKTHPPNRPVY 259
+ K P+ Y
Sbjct: 407 LSSKGCSPSLISY 419
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 44/215 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
T +++I+ K + A+++FN+ C+ V+ YN L F + R
Sbjct: 208 TCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKL 267
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G D +H +++ + CS G+ +A + L + KG P V + ++N
Sbjct: 268 PSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLL 327
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
M K G P+ +FN LI+ C + G D+ T I
Sbjct: 328 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNIL 387
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
+ A+ K+ +D+A +L L G PSL ++
Sbjct: 388 LTALCKDGKVDDAVVILSQLSSKGCS--PSLISYN 420
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 134 SGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
+G++ E FL+ +++KG P V + ++ + K G + ++E E G
Sbjct: 82 NGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILE------ESGA 135
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
D N+ + I A K I+EA R+L D + P+ +D C
Sbjct: 136 VIDANSYNVLINAYCKSGEIEEALRVL-----DHTSVAPNAATYDAVLC 179
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 37/173 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M KG +PD T L+ +C G+ + A + L + G S ++N K G
Sbjct: 95 MTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGE 154
Query: 172 V-------------PDLETFNSLIETICKSGELGLCA-------------DVNTNKISIP 205
+ P+ T+++++ ++C G+L DV T + I
Sbjct: 155 IEEALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLID 214
Query: 206 AVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEM 247
A KE + +A +L + G K F G+ D+A F ++
Sbjct: 215 ATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKL 267
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 87/213 (40%), Gaps = 46/213 (21%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT------AFNCQQCVL--- 100
+ + +++ + + +++I + K G I+ A+ V + + ++ C L
Sbjct: 125 RIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCSLCDR 184
Query: 101 --LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
L ++ V R ++ PD T T+L++A C + +A + E+ KG
Sbjct: 185 GKLKQAMQV-LDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCK----- 238
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
PD+ T+N LI+ CK G L G +DV ++ + +
Sbjct: 239 --------------PDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILR 284
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
++ +A +LL ++ G FPS+ F+
Sbjct: 285 SLCSGGRWMDAMKLLATMLRKG--CFPSVVTFN 315
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 47/213 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH---------- 106
P+S S P +I+ F ID A+E + C ++ YN L
Sbjct: 344 PNSRSFNP-----LIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVD 398
Query: 107 ---VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
V ++ KG P ++ +++ GK A E L+E+ KG P + + +V
Sbjct: 399 DAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVV 458
Query: 164 NKMIKQGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKIS---- 203
+ ++G V P+ +NS++ +CK+ + L D + ++
Sbjct: 459 GGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCK 518
Query: 204 ---------IPAVSKEFMIDEAFRLLCNLVEDG 227
I ++ E + +EA +L L G
Sbjct: 519 PTEASYTTLIKGITYEGLAEEASKLSNELYSRG 551
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
F Q +I E GK + D++ ++K F C + F M R G VP
Sbjct: 441 FDQAFKIICEMMGKGFVPDDST--YSKVIGFLCDASKV--EKAFSLFEEMKRNGIVPSVY 496
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------AKQM------VNKM 166
T+TIL++++C +G +++A+++ E+ KG P V + AKQM M
Sbjct: 497 TYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMM 556
Query: 167 IKQGSVPDLETFNSLIETICKSGEL 191
+ +G P++ T+ +LI+ CK+G++
Sbjct: 557 LLEGCKPNVVTYTALIDGHCKAGQI 581
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 21/165 (12%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ F K G + +A EVF K + + Y+S C + M+
Sbjct: 657 VIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENS 716
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P+ +T +V+ C GK EA + + ++ +KG NP V + M++ K G + E
Sbjct: 717 CTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKI---E 773
Query: 177 TFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFMIDEAFRLL 220
L +C G CA + T ++ I ++DEA++LL
Sbjct: 774 QCLELFRDMCSKG----CAPNFITYRVLINHCCSNGLLDEAYKLL 814
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 38/163 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ FGK G I+ +E+F M KG P+ T+
Sbjct: 758 TYTAMIDGFGKSGKIEQCLELFRD----------------------MCSKGCAPNFITYR 795
Query: 126 ILVNAWCSSGKMREAQEFLQELSD--------------KGFNPPVRSAKQMVNKMIKQGS 171
+L+N CS+G + EA + L E+ +GF+ ++ +++++ + S
Sbjct: 796 VLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENES 855
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIP--AVSKEFM 212
VP + LI+ K+G L + D+ S P AVS +++
Sbjct: 856 VPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYL 898
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 31/172 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+K D + + L+ ++ + ++G + A+E + F + YN+L F+R
Sbjct: 167 IKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADK 226
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M+ FV D+ T + + C GK REA + + E D F P
Sbjct: 227 LDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAED--FVPDTVFYNR 284
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A ++++M +P++ T+ L+ + G+LG C +
Sbjct: 285 MVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRI 336
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 49/175 (28%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
M+ G P++ + +++ +C GK+++AQE ++S++G++P + + ++
Sbjct: 642 MLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNR 701
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
KM++ P++ + +++ +CK G+ DE
Sbjct: 702 LDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGK----------------------TDE 739
Query: 216 AFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
A++L+ + E G F G+ + F +M K PN Y
Sbjct: 740 AYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITY 794
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 35/155 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------------FV 110
+I + K A ++F K CQ L+YN VC +
Sbjct: 355 LIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYS 414
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
M+ G V +K + C +GK +A + + E+ KGF P
Sbjct: 415 EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDAS 474
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
V A + +M + G VP + T+ LI++ CK+G
Sbjct: 475 KVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAG 509
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
FVPD + +V+ C + EA + L + P V + K
Sbjct: 275 FVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCK 334
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKS 188
++++ MI +G P+ E FNSLI CKS
Sbjct: 335 RILSMMITEGCYPNREIFNSLIHAYCKS 362
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 33/172 (19%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS----- 158
RM +P+ T+ IL++ G++ + L + +G FN + +
Sbjct: 304 RMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSR 363
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGE------LGLCADVNTNKISIPAVS 208
A ++ KMIK G P +N I ++C + E L L + + + V
Sbjct: 364 DYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVL 423
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ + R LC G+FD AF EM K P+ Y+
Sbjct: 424 NKVNVSNFARCLC-----------GAGKFDQAFKIICEMMGKGFVPDDSTYS 464
>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 662
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M L V P SL+I K G ++ VF MIR
Sbjct: 318 MDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 355
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + +G + +A L + D+GFNP V + +VN + K G V +
Sbjct: 356 KGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEE 415
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH----- 228
++ F + C+ L + + ++ I + K +DEA RL + E G
Sbjct: 416 AMDYFQT-----CRFNGLAINSMFYSSLID--GLGKAGRVDEAERLFEEMSEKGCTRDSY 468
Query: 229 ------KLFPSLGQFDDAFCFFSEMQ 248
F G+ D+A F M+
Sbjct: 469 CYNALIDAFTKHGKVDEALALFKRME 494
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 63 FPQTLS---LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----HVCFVRMIR 114
FP T+S +I+ FGK G+++ + V+ K + + YN L FV
Sbjct: 183 FPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAE 242
Query: 115 KGF--------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
+ F PD T+ ++ +C +G+ ++A E L+ + KG A ++
Sbjct: 243 RVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLE-----ADKITYMT 297
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+ Q D + F+S + + E GL + + I + KE ++E + + N++
Sbjct: 298 MIQACYADSD-FSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRK 356
Query: 227 GHK 229
G K
Sbjct: 357 GSK 359
>gi|341605711|gb|AEK82958.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605785|gb|AEK82995.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605787|gb|AEK82996.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605789|gb|AEK82997.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605793|gb|AEK82999.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605795|gb|AEK83000.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K ++ M L V T +++++ + K G + A +V N
Sbjct: 420 KVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNT-------------------- 459
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M+++G P+ T+T L + C G ++ A E L E+S+KG + ++N + K
Sbjct: 460 --MVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKA 517
Query: 170 GSV----------------PDLETFNSLIETICKSGELGLCADV 197
G + PD+ T+ +LI+ +CKSGEL D+
Sbjct: 518 GYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDL 561
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 34/171 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--------------- 153
F M RKG D T+T L+N C +G+++EA++ LQE+ + +
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCK 446
Query: 154 -PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ A Q+ N M+++G P++ T+ +L + +CK G++ GL + T
Sbjct: 447 RGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACT 506
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEM 247
I + K +D+A R + ++ D L P + + DA C E+
Sbjct: 507 YNSLINGLCKAGYLDQAMRTMADM--DAAGLKPDVYTYTTLIDALCKSGEL 555
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M G PD T+T L++A C SG++ A + LQE+ D G P
Sbjct: 530 MDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGR 589
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------GLCA-----DVNTNKI 202
V K+++ M+++ P+ T+NSL++ C + G+C+ + NT I
Sbjct: 590 VEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNI 649
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
I K + EA ++E G +L S
Sbjct: 650 LIKGHCKARSMKEAQYFHNEMIEKGFRLTAS 680
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 40/212 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I K G +D A+ A + V Y +L H M
Sbjct: 506 TYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ G P T+ +L+N +C SG++ ++ L+ + +K +P +
Sbjct: 566 LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNM 625
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+S ++ M + P+ T+N LI+ CK+ + + MI++
Sbjct: 626 KSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNE-----------MIEKG 674
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
FRL + +L +F +A F +M+
Sbjct: 675 FRLTASSYSALIRLLNKKKKFVEARKLFHDMR 706
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M + P++ T+ IL+ C + M+EAQ F E+ +KGF S
Sbjct: 635 MCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKK 694
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIE 183
A+++ + M K+G + + +N I+
Sbjct: 695 FVEARKLFHDMRKEGFTAEPDVYNFYID 722
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 51/209 (24%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIR 114
+++I F + GL+ +A+ V ++ C V+ YN+L +C R M
Sbjct: 20 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 79
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G PD T T L++ +C GK+ +A Q+ + M+ Q PD
Sbjct: 80 RGVPPDLCTFTTLIHGYCIEGKLDKAL-------------------QLFDTMLNQRLRPD 120
Query: 175 LETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+ T+N+LI+ +C+ G+L L D+++ +I V+ +ID C
Sbjct: 121 IVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSH----C--------- 167
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
GQ +DAF F EM K PN Y
Sbjct: 168 --EKGQVEDAFGFLDEMINKGILPNIMTY 194
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 60/233 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I + G +D A+++F+ + ++ YN+L R M
Sbjct: 88 TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 147
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ P+ T++IL+++ C G++ +A FL E MI +G +
Sbjct: 148 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDE-------------------MINKGIL 188
Query: 173 PDLETFNSLIETICKSGELG----LCADVNTNKIS---------IPAVSKEFMIDEAFRL 219
P++ T+NS+I+ C+SG + + NK+S I KE + +AF+L
Sbjct: 189 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 248
Query: 220 LCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
L N++E K+ P + G +A F +M K P+R Y
Sbjct: 249 L-NMMEK-EKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 299
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 34 TLNRLNLTLISELSM---WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
T N L I E M +K + +M+ + + T +++I F HG + A +F K
Sbjct: 228 TYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK- 286
Query: 91 TAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
M KG PD+ T+ ++N ++G +EA + E+ +
Sbjct: 287 ---------------------MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 325
Query: 151 GFNP 154
GF P
Sbjct: 326 GFAP 329
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
M+ L + P + SL+I K A VF C+ V +Y +L
Sbjct: 316 MEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGS 375
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F RM +GF PD T+++LVN C SG++ + E +KG
Sbjct: 376 MEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYAS 435
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFMIDEAFRLL 220
+++ + K G + D E +L E + + G CA D I A++K ID+A L
Sbjct: 436 LIDGLGKAGRIEDAE---NLFEEMSEKG----CARDSYCYNAIIDALAKHGKIDQALALF 488
Query: 221 CNLVEDG 227
+ E+G
Sbjct: 489 GRMEEEG 495
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 39/135 (28%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
II+ KHG ID A+ +F + C Q V T TIL++
Sbjct: 471 IIDALAKHGKIDQALALFGRMEEEGCDQTVY----------------------TFTILID 508
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
K EA +F ++ DKG P V S A ++++ + G +P
Sbjct: 509 GLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIP 568
Query: 174 DLETFNSLIETICKS 188
+ F +I T+CK+
Sbjct: 569 E-TAFEDMINTLCKA 582
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/215 (18%), Positives = 88/215 (40%), Gaps = 30/215 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----HVCFVRMIRKGF------- 117
+I+ FG GL++ + V+ + + YN L + F+ K F
Sbjct: 191 LIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGK 250
Query: 118 -VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
VPD T+ I++ +C +GK+++A E +++ K P + ++ +
Sbjct: 251 IVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSE------R 304
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFP 232
F++ + + E GL ++ + I + K+ EA+ + + + G + ++
Sbjct: 305 DFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYT 364
Query: 233 SL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+L G ++A F M+ + P+ Y+
Sbjct: 365 ALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYS 399
>gi|115482834|ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
gi|31432949|gb|AAP54520.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|62733610|gb|AAX95727.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa Japonica Group]
gi|125575336|gb|EAZ16620.1| hypothetical protein OsJ_32092 [Oryza sativa Japonica Group]
Length = 507
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 54/249 (21%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+MW+ +E M L V +T L++ G+ GL VE F K + FN + +N+ L
Sbjct: 200 AMWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRLVERFIKSSNFNYRPFRNSFNAIL 259
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H +MI +G PD T+ +++ A K+ + + L E+ G
Sbjct: 260 HTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLRKLDQFHKLLDEMGKNGLA 319
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P + + A ++N M G VP + F +LI+ + ++G L C
Sbjct: 320 PDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEAC--- 376
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCN-------LVEDGHKLFPSLGQFDDAFCFFSEMQIK 250
++ DE + C ++ G + + G+FD+A FF +M ++
Sbjct: 377 ------------KYFFDEMVKKGCQPDVVCYTVMITG---YVAAGEFDEAQKFFDDMLLR 421
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 422 GQLPNVYTY 430
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 32/155 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY------- 102
K ++ M + L+ T +L++ GK A+ + N + C VL +
Sbjct: 308 KLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGL 367
Query: 103 ---NSLHVC---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+L C F M++KG PD +T+++ + ++G+ EAQ+F +
Sbjct: 368 SRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDD---------- 417
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
M+ +G +P++ T+NS+I +C GE
Sbjct: 418 ---------MLLRGQLPNVYTYNSMICGLCIVGEF 443
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 65/236 (27%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------I 113
+++I K G++D A+ +F + V+ Y ++ RM I
Sbjct: 450 FNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMI 509
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------V 156
G P+ + L+ +C+ G + +A+E + E+ D+G P V
Sbjct: 510 SIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRV 569
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+A+ + N +I G PD+ TFNSLI+ C G++ D+A
Sbjct: 570 MNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKM----------------------DKA 607
Query: 217 FRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
F +L +V G + F S G+ DD F EM K P Y+
Sbjct: 608 FGVLDAMVSAGTEPDVVTYSTLINGYFKS-GRIDDGLILFREMLCKRVKPTTVTYS 662
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M++KG VP+ T+ +V+A C + M +A+ L+++ D P
Sbjct: 295 FNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSC 354
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---------NTNKIS 203
+ A +M +M ++G +PD+ TFNSL++++CK A++ + IS
Sbjct: 355 LGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIIS 414
Query: 204 IPAVSKEFMIDEAFRLLCNL---------VEDGH------KLFPSLGQFDDAFCFFSEMQ 248
+ + + F + NL V D H G D+A F+EM+
Sbjct: 415 YSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMR 474
Query: 249 IKTHPPNRPVYA 260
+ PN YA
Sbjct: 475 GQGVSPNVVTYA 486
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 24/128 (18%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
G++ N F KC + + L LH RM G VPD ++ ++ + C +
Sbjct: 200 GIVTN---TFLKCLCYAKRTDEALSMLLH----RMSELGCVPDAFSYNTVIKSLCGGSRS 252
Query: 138 REAQEFLQELS-DKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNS 180
+EA + L ++ G +P V S A + N+M+++G VP++ T+NS
Sbjct: 253 QEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNS 312
Query: 181 LIETICKS 188
++ +CK+
Sbjct: 313 IVHALCKA 320
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMI 113
S II G + NA +VFN + + +NSL C V M+
Sbjct: 556 FSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMV 615
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VR 157
G PD T++ L+N + SG++ + +E+ K P
Sbjct: 616 SAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTS 675
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+AK+M ++MI+ G+ + T+ +++ +C++
Sbjct: 676 AAKKMFHEMIESGTAMSISTYTIILQGLCRN 706
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 53/243 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S +I+ GK G +D+A ++ K ++Y SL H + M
Sbjct: 231 TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM 290
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
+ G PD ++ +G+ + + +E++ GF P RS +++ ++K
Sbjct: 291 VHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLA 350
Query: 169 ------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
QG V D +N++I+ CKSG++ G V T
Sbjct: 351 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 410
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTH 252
I ++K +DEA+ L +G KL F +G+ D+A+ E+ K
Sbjct: 411 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 470
Query: 253 PPN 255
PN
Sbjct: 471 TPN 473
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 30/195 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM------------IRKGF 117
+I +G G D A + + A V+ YN + C + +++
Sbjct: 96 MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA 155
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----- 172
VP+ T+ IL++ C GK+ A E ++ G P V + M++++ K +
Sbjct: 156 VPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACS 215
Query: 173 -----------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR--L 219
P+ TF+SLI+ + K G + + + V + R
Sbjct: 216 IFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFF 275
Query: 220 LCNLVEDGHKLFPSL 234
C EDGHK++ +
Sbjct: 276 KCGRKEDGHKIYKEM 290
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 29/166 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT---------AFNCQQCV 99
+ E K + + + S +I+ FGK G ID A + + +NC
Sbjct: 424 YMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 483
Query: 100 LL----YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
L+ N +CF M P++ T++IL+N C K +A F QE+ G P
Sbjct: 484 LVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPN 543
Query: 156 VRSAKQMVNKMIK----------------QGSVPDLETFNSLIETI 185
+ M++ + K G +PD ++N++IE +
Sbjct: 544 TITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGL 589
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
L N + F M +G V D + +++ +C SGK+ +A + L+E+ KG P V +
Sbjct: 349 LANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYG 408
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+++ + K + L+ L E ++ G+ +V I K IDEA+ ++
Sbjct: 409 SVIDGLAK---IDRLDEAYMLFE---EAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIM 462
Query: 221 CNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
L++ G L P++ + ++A F M+ PPN+ Y+
Sbjct: 463 EELMQKG--LTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYS 513
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 94/252 (37%), Gaps = 76/252 (30%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV 110
TI + K + +FP L K +D AVE+F + C YN+
Sbjct: 49 TILIGKVGLMLLFPWVLC-------KANRLDEAVELFEQLEQNRKVPCAYAYNT------ 95
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------RSAKQ 161
++ + S+GK EA L+ KG P V K+
Sbjct: 96 ----------------MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKR 139
Query: 162 MVNKMI------KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V + + K+ +VP++ T+N LI+ +C+ G+L GL +V T I
Sbjct: 140 RVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNI 199
Query: 203 SIPAVSKEFMIDEAFRLLCNLVED--------GHKLFPSL-------GQFDDAFCFFSEM 247
I + K ++EA C++ E F SL G+ DDA+ + +M
Sbjct: 200 MIDRLCKAQKLEEA----CSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKM 255
Query: 248 QIKTHPPNRPVY 259
H P VY
Sbjct: 256 LDCGHVPGAIVY 267
>gi|399107208|gb|AFP20368.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGXVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMTLFKRME 186
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 34/148 (22%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------H---- 106
S V P T S ++ +G+HGL A +++++ C C++ Y+ L H
Sbjct: 256 SKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQ 315
Query: 107 ---VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
CF M + G VPD + +T L++A+ +G+ REA+ E++ +GF
Sbjct: 316 EALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGF----------- 364
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL 191
VPD T+ L+ +G L
Sbjct: 365 --------VPDGITYGILVRAFANAGRL 384
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 95/234 (40%), Gaps = 30/234 (12%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN------ 103
K + MK S T + +I+ +G+ GL A+E++++ C + V YN
Sbjct: 109 KLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMY 168
Query: 104 -------SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M KG PD+ T+ L++ + +A E L+E+++ G+ P +
Sbjct: 169 GKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNI 228
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ M++ K+ SV + L E + G+ ++ T + + + EA
Sbjct: 229 WTYNIMLSSARKEQSVAEA---TQLFENLKSK---GVVPNIVTYSAMLSLYGRHGLYTEA 282
Query: 217 FRLLCNLVEDG--------HKLFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVY 259
+L ++E G L S G + +A F +M+ P+ +Y
Sbjct: 283 AKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIY 336
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLI 182
T+T L+ + ++G++++ ++ QE+ DKG +P + ++ ++G F +
Sbjct: 90 TYTNLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKG------LFKEAL 143
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
E + +G DV+T I+I K ++++ RLL
Sbjct: 144 ELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLL 181
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 51/229 (22%)
Query: 28 DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF 87
D +A T R LTL + ++ E+M + +S T +++I+ K G +++A ++
Sbjct: 482 DCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQ 541
Query: 88 NKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
++M+ G PD T+T L++A C G +REA++F +++
Sbjct: 542 ----------------------MKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDM 579
Query: 148 SDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-- 189
G P + SA KM+++G P+ T+N LI +C++G
Sbjct: 580 ISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRT 639
Query: 190 -----------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
E GL + T + I KE ++A R + ++G
Sbjct: 640 QLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNG 688
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 62/260 (23%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
++PD + T + ++ + K G + A+ +F VL YN L + R
Sbjct: 374 LQPDVI-----TYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
M+ +G +PD T+TIL+ ++ + A+EF E+ KG P
Sbjct: 429 LEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNT 488
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ A ++ M+ +G D T+N LI+ +CK+G L G
Sbjct: 489 RIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNG 548
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDD 239
L D T I A + ++ EA + +++ DG L PS G
Sbjct: 549 LQPDCITYTCLIHAHCERGLLREARKFFKDMISDG--LAPSAVTYTVFIHAYCRRGNLYS 606
Query: 240 AFCFFSEMQIKTHPPNRPVY 259
A+ +F +M + PN Y
Sbjct: 607 AYGWFRKMLEEGVEPNEITY 626
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------- 156
V FV M G PD T+ L+N +C +G ++EA +L G P V
Sbjct: 363 QVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDG 422
Query: 157 -------RSAKQMVNKMIKQGSVPDLETFNSLIE 183
A+++ +M++QG +PD+ T+ L++
Sbjct: 423 YCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMK 456
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
M D L+ T ++ I + + G + +A F K + + YN L +C
Sbjct: 579 MISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGR 638
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F M+ +G VP+K T+T+L++ C G +A F E+ G +P + K
Sbjct: 639 TQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKA 698
Query: 162 M 162
+
Sbjct: 699 L 699
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 33/164 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQ--ELSDKG----FNPPVRS--AKQMVNK-- 165
G +P+ TH +++ G + EA E ++ LS K +NP + AK V K
Sbjct: 269 GCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKAD 328
Query: 166 -----MIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAV 207
M +G +P + T+N++I + +SG+ +GL DV T +
Sbjct: 329 DLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGY 388
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
K + EA L +L G L P++ ++ D +C +++
Sbjct: 389 CKAGSLKEALLLFGDLRHAG--LAPTVLTYNILIDGYCRLGDLE 430
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
+ M +G +P T+ +++ SG++ AQ E+ G P V + ++N K
Sbjct: 332 LEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKA 391
Query: 170 GSV----------------PDLETFNSLIETICKSGEL 191
GS+ P + T+N LI+ C+ G+L
Sbjct: 392 GSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDL 429
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 44/214 (20%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
D+ +FP T + +I F G + A + ++ N V +YN L +C
Sbjct: 177 DARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNV 236
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
M ++G P T++ L++ +C G+++ A++ + G NP V S M
Sbjct: 237 KEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIM 296
Query: 163 VN----------------KMIKQGSVPDLETFNSLIETICKSGEL-------------GL 193
+N +M+ + VPD T+NSLI+ +CKSG + G
Sbjct: 297 INGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQ 356
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
ADV T + A+ K +D+A L + E G
Sbjct: 357 PADVVTYTSLLDALCKNQNLDKATALFMKMKERG 390
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 40/199 (20%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
L N + + M +G PD T+T L+ +C G++ A L E+ K NP V
Sbjct: 165 LVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYN 224
Query: 161 QMVNKMIKQGSV----------------PDLETFNSLIETICKSGE-------------L 191
++N + K+G+V P + T+++L++ C GE +
Sbjct: 225 ILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQM 284
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLL-----CNLVEDG---HKLFPSL---GQFDDA 240
G+ +V + I I + K +DEA LL N+V D + L L G+ A
Sbjct: 285 GVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSA 344
Query: 241 FCFFSEMQIKTHPPNRPVY 259
+EM + P + Y
Sbjct: 345 LNLMNEMHHRGQPADVVTY 363
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 34/170 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
+++ +GF D ++ L+N C G+ R A + L+ + D+ P
Sbjct: 105 KVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDK 164
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
V A + ++M +G PD T+ +LI C G+L + V
Sbjct: 165 LVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYN 224
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
I I A+ KE + EA LL + ++G K P + + D +C E+Q
Sbjct: 225 ILINALCKEGNVKEAKNLLAVMTKEGIK--PGVVTYSTLMDGYCLVGEVQ 272
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
M PD++ T + +I+ K G I +A+ + N+ V+ Y SL +C
Sbjct: 321 MVPDTV-----TYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 375
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F++M +G P T+T L++ C G+++ AQE Q L KG V +
Sbjct: 376 LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTV 435
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
M++ + K+G F+ + K + G + T +I I ++ ++ D+A +LL
Sbjct: 436 MISGLCKEG------MFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLH 489
Query: 222 NLVEDG 227
++ G
Sbjct: 490 EMIAKG 495
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 50/193 (25%)
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------------- 154
V+ IR FV T IL+N +C G+M + L ++ G+ P
Sbjct: 38 VKGIRANFV----TLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLK 93
Query: 155 -PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------LGLCADVNT------- 199
V+ + +K++ QG D ++ +L+ +CK GE L + D +T
Sbjct: 94 GEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMY 153
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSE 246
N I I + K+ +++EA+ L + D +FP LGQ AF E
Sbjct: 154 NTI-IDGLCKDKLVNEAYDLYSEM--DARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDE 210
Query: 247 MQIKTHPPNRPVY 259
M +K P +Y
Sbjct: 211 MILKNINPGVYIY 223
>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 87/219 (39%), Gaps = 40/219 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
II+ F K G +D AV + + A V+ Y SL + M KG
Sbjct: 589 IIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKG 648
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--PV--------RSAKQMV--- 163
D + L++ +C M A EL ++G NP PV R+ MV
Sbjct: 649 VKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAAL 708
Query: 164 ---NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
KM+K G DL T+ +LI+ + K G L L +D+ T ++ V E M + ++
Sbjct: 709 DLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIM----YTVI 764
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
N + GQF F EM+ PN +Y
Sbjct: 765 VNGLSKK-------GQFVKVVKMFEEMKKNNVTPNVLIY 796
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 114/276 (41%), Gaps = 60/276 (21%)
Query: 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
N L S L ++ +E P SV T S++IE F K+G ++ A+E + K +
Sbjct: 351 NNDLGSALDLFYKMENEGPSPNSV---TFSVLIERFSKNGEMEKALEFYKKMESLGLTPS 407
Query: 99 VLLYNSLHVCFVRMIR-----KGFVPDKRTHTILVN--------AW-CSSGKMREAQEFL 144
V +++ +++ + K F D+ T L N +W C GK+ +A E L
Sbjct: 408 VFHVHTIIQGWLKGQKHEEALKLF--DESFETGLANVFICNTILSWLCKQGKIDKATELL 465
Query: 145 QELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+++ +G P V S A+ + + M+++G P+ T++ LI+ K+
Sbjct: 466 RKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKN 525
Query: 189 GE----LGLCADVNTNKISIPAVSKEFMID---------EAFRLLCNLVEDGH------- 228
+ L + + ++ I + V + +I+ +A LL N++E+
Sbjct: 526 HDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMS 585
Query: 229 -----KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F G+ D A + EM PN Y
Sbjct: 586 YNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITY 621
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 44/211 (20%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
VFP T + +I + K G ++ AV +F N + V+ YN+L F +
Sbjct: 337 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 396
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------- 158
MI + P+ ++ IL+N +C+ G + EA E+ +KGF + +
Sbjct: 397 NELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 456
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCAD 196
A + ++ M+ +G VPD T+N+LI K + GL D
Sbjct: 457 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPD 516
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + + S++ + EA ++ ++E G
Sbjct: 517 VITYNVILNGFSRQGRMQEAELIMLKMIERG 547
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 55/256 (21%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S V P + S +I K+G +D A++ F ++Y L F R
Sbjct: 230 SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMS 289
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M+ +G V D T+ ++N C + EA E E++++G P + ++
Sbjct: 290 EALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 349
Query: 164 NKMIKQGSV----------------PDLETFNSLIETICKSGEL----GLCADVNTNKIS 203
N K G++ PD+ T+N+LI+ CK E+ L D+ + +I
Sbjct: 350 NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY 409
Query: 204 IPAVSKEFMID---------EAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCF 243
+S +I+ EAFRL +VE G K + G A F
Sbjct: 410 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEF 469
Query: 244 FSEMQIKTHPPNRPVY 259
S M +K P+ Y
Sbjct: 470 LSNMLLKGIVPDGITY 485
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M KG PD T+ L+NA+C G + EA E + +S KG P V +
Sbjct: 123 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 182
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID- 214
AK ++++M+K G PD T+N L+ C++ + ++ +I S+ + D
Sbjct: 183 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM-----MDAERIFDEMPSQGVVPDL 237
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+F L L+ G D A +F +M+ P+ +Y
Sbjct: 238 VSFSALIGLLSKN-------GCLDQALKYFRDMKNAGLAPDNVIYT 276
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 37/64 (57%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M G +PD T+ +++N + G+M+EA+ + ++ ++G NP + ++N + Q
Sbjct: 507 KMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQN 566
Query: 171 SVPD 174
++ +
Sbjct: 567 NLKE 570
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 59 SLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S ++P +S ++I + G + A ++++ + ++ N++ + R
Sbjct: 405 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 464
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M+ KG VPD T+ L+N + M A + ++ + G P V + ++
Sbjct: 465 KADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVIL 524
Query: 164 N----------------KMIKQGSVPDLETFNSLI 182
N KMI++G PD T+ SLI
Sbjct: 525 NGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 559
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD + T + +I F K +D A + NK V+ YN + F R
Sbjct: 480 PDGI-----TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 534
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
MI +G PD+ T+T L+N + ++EA E+ +GF P
Sbjct: 535 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585
>gi|341605777|gb|AEK82991.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605779|gb|AEK82992.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605809|gb|AEK83007.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605811|gb|AEK83008.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALXKHGKVDEAMTLFKRME 184
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 53/265 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
+K + M ++ T +++I +D A+E+F + C+ +N L
Sbjct: 205 YKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264
Query: 106 HV----------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
H RM G VPD T++ L++ CS ++ +A+ L+++ + P
Sbjct: 265 HCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPT 324
Query: 156 V----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------- 191
V + A+++++ M+ G PD+ T+N+L+ C++G+
Sbjct: 325 VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLS 384
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLG 235
GL +V T + + K + EA + + G F S G
Sbjct: 385 DMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAG 444
Query: 236 QFDDAFCFFSEMQIKTHPPNRPVYA 260
Q D F EM P+ VY
Sbjct: 445 QVDGGLKLFGEMVCAGISPDHVVYG 469
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 21/177 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVC-----------FVRM 112
T + +++ K ++ A+ +FN+ C +N+ L +C F M
Sbjct: 117 TYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
K PD ++ IL++ +GK+ EA + Q + D G P + +++ M ++
Sbjct: 177 EAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTL 236
Query: 173 PD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ LE F S+ C+ T I I A K +DEAFRLL + +DGH
Sbjct: 237 DEALELFKSMRSKGCRPSRF-------TFNILIDAHCKRGKLDEAFRLLKRMTDDGH 286
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 34/164 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
PDS S ++I+ K G ++ A ++F + + YN + +C
Sbjct: 183 PDSWS-----YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLD 237
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
F M KG P + T IL++A C GK+ EA L+ ++D G P V +
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLI 297
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+ ++ M+K+ P + T N+LI +CK+G +
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 341
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 58/224 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+ PDS S ++I+ K G +++A +F K + Y SL +C
Sbjct: 6 VSPDSWS-----YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F M R+G P T+ ++++A C G + EA +
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACD------------------- 101
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++ KMI+ G VPD+ T+N++++ +CKS + + +E RL C
Sbjct: 102 LIKKMIEDGHVPDVVTYNTVMDGLCKSSRV---------------EEALLLFNEMERLGC 146
Query: 222 NLVEDGHKLFPSLG-----QFDDAFCFFSEMQIKTHPPNRPVYA 260
H LG + D A F EM+ K PP+ Y
Sbjct: 147 TPNRRSHNTI-ILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYG 189
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 53/174 (30%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M + PD ++ IL++ +GK+ +A+ Q+L G P +
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A+++ M ++G P T+N +I+ CK G M++E
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRG----------------------MLEE 98
Query: 216 AFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNR 256
A L+ ++EDGH P + + ++A F+EM+ PNR
Sbjct: 99 ACDLIKKMIEDGH--VPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNR 150
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 31/203 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I K G I A EV + + V+ YN+L R M
Sbjct: 327 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 386
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G P+ T+T LV+ C + ++ EA ++ G P V
Sbjct: 387 VARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQV 446
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
++ +M+ G PD + +L +CKSG ++ + ++ E DE
Sbjct: 447 DGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEI--LREGRESLRSEAWGDEV 504
Query: 217 FRLLCNLVEDGHKLFPSLGQFDD 239
+R + + + K+ +LG D
Sbjct: 505 YRFAVDGLLEAGKMEMALGFVRD 527
>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
Length = 553
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ G PD T++ L++ CS+G++ EA L + ++G P
Sbjct: 164 MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGR 223
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+ AK+++N MI G P T+N L+E +CK G G DV T
Sbjct: 224 IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSS 283
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
+ + K ID++F L+ ++ +G
Sbjct: 284 YMDGLCKAGRIDKSFALVDKMLSNG 308
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
+M+ G P + T IL++ C S A+ L+ ++ G++ V
Sbjct: 303 KMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEH 362
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
S ++ M K+G P+ TFN ++ ++CK G L
Sbjct: 363 RWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRL 399
>gi|357486821|ref|XP_003613698.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515033|gb|AES96656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 749
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ +EL+K + + V ++ ++ + G + A+E F++ F + +YN++
Sbjct: 69 WEALELLKKNGVLVTSDSVRALVRSYSHMGYTEKAIESFSRMREFGIEPDAHMYNTILRD 128
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+ M++ P+ T+ +L++ +C G+++ AQE L E+ G P
Sbjct: 129 VLNEKLLELALALYTTMLKSNVEPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPC 188
Query: 156 VRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V S A ++ N M + PD+ + N ++ CK G L
Sbjct: 189 VLSTTSILYGCCQANNVDEAHKLFNDMKETSYPPDMISCNVVLNGFCKMGRL 240
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 29/187 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I+ F K G + A E+ ++ CVL S+ H F M
Sbjct: 156 TYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHKLFNDM 215
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+ PD + +++N +C G++ EA F+ + + GF+ S ++N
Sbjct: 216 KETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYSSLINAFFKARRY 275
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
KM KQG VPD+ + +I + K G +G A + I + +
Sbjct: 276 REAHAWYTKMFKQGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDAYCYNAV 335
Query: 217 FRLLCNL 223
+ LC++
Sbjct: 336 IQGLCDV 342
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 47/137 (34%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
Y H + +M ++G VPD + I++ G++ EA + L+E++ G P
Sbjct: 275 YREAHAWYTKMFKQGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDAYCYNA 334
Query: 156 -----------------------------------------VRSAKQMVNKMIKQGSVPD 174
V A+++ N+M K G P
Sbjct: 335 VIQGLCDVGLLNRAQSLRLEISEHNVCTHTILICEMCKRGMVAEAQELFNQMEKLGCEPS 394
Query: 175 LETFNSLIETICKSGEL 191
+ TFN+LI +CK+ L
Sbjct: 395 VVTFNTLINGLCKANNL 411
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG-----FV 118
T +++I E K G++ A E+FN+ C+ V+ +N+L +C + K +
Sbjct: 362 THTILICEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKANNLEKAKNLFCKL 421
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-PDLET 177
R H++ ++ SG++ ++ L++ + + A +++ + G V PD+ T
Sbjct: 422 EVGRRHSLHLSLSQGSGQVSDSARLLKKAKEMCEAGQILRAYKLITDL--AGEVKPDIIT 479
Query: 178 FNSLIETICKSGEL 191
+N L+ +C E+
Sbjct: 480 YNILLNALCMDREV 493
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-----------------SAKQ 161
PD T+ IL+NA C ++ A F + L KG+ P A +
Sbjct: 475 PDIITYNILLNALCMDREVNAAYNFFEFLQKKGYPSPDNVTYGTIIKGLFMVDREDEAFK 534
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ +M K GS P L + +L+ +C+ ++
Sbjct: 535 VFQRMQKTGSEPTLSVYRTLMTCLCRKSKV 564
>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 890
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 39/188 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------HVCFV------- 110
+ S +I FG++G +AV++F +++ V+ YNS+ V F
Sbjct: 249 HSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYD 308
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
MI G +PD+ T+ L++ S G AQ+ L E+ +
Sbjct: 309 EMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCI------------------ 350
Query: 171 SVPDLETFNSLIETICKSGELGLCADV----NTNKISIPAVSKEFMIDEAFRLLCNLVED 226
VPD+ T+N+ ++T+CK+G++ L V ++ ++ V+ M+D + NL+ED
Sbjct: 351 -VPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAK--ANLLED 407
Query: 227 GHKLFPSL 234
L+ +
Sbjct: 408 ALNLYEEM 415
>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
Length = 384
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 34/148 (22%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------H---- 106
S V P T S ++ +G+HGL A +++++ C C++ Y+ L H
Sbjct: 256 SKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQ 315
Query: 107 ---VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
CF M + G VPD + +T L++A+ +G+ REA+ E++ +GF
Sbjct: 316 EALACFQDMRKSGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGF----------- 364
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL 191
VPD T+ L+ +G L
Sbjct: 365 --------VPDGITYGILVRAFANAGRL 384
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 95/234 (40%), Gaps = 30/234 (12%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN------ 103
K + MK S T + +I+ +G+ GL A+E++++ C + V YN
Sbjct: 109 KLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMY 168
Query: 104 -------SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M KG PD+ T+ L++ + +A E L+E+++ G+ P +
Sbjct: 169 GKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNI 228
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+ M++ K+ SV + L E + G+ ++ T + + + EA
Sbjct: 229 WTYNIMLSSARKEQSVAEA---TQLFENLKSK---GVVPNIVTYSAMLSLYGRHGLYTEA 282
Query: 217 FRLLCNLVEDG--------HKLFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVY 259
+L ++E G L S G + +A F +M+ P+ +Y
Sbjct: 283 AKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIY 336
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLI 182
T+T L+ + ++G++++ ++ QE+ DKG +P + ++ ++G F +
Sbjct: 90 TYTNLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKG------LFKEAL 143
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
E + +G DV+T I+I K ++++ RLL
Sbjct: 144 ELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLL 181
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
F + +SL+ + + GL N V ++N C+ L N+L + F M +KG V D
Sbjct: 701 FQEAVSLV-DSMAELGLEPNVV-IYNTVINGLCKN-RDLNNALEI-FYGMEKKGIVADAV 756
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKM 166
T+ L++ C+SG+ +A L+++ + +P V AK + +M
Sbjct: 757 TYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEM 816
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCA---DVNTNKISIPAVSKEFMIDEAFRLLCNL 223
I++ P++ T+NSLI C G LG D+ +K P V + F
Sbjct: 817 IRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGF-CKSKR 875
Query: 224 VEDGHKLFPSL---GQFDDAFCF 243
VEDG KLF + G DAF +
Sbjct: 876 VEDGMKLFCEMTHQGLVGDAFTY 898
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 27/187 (14%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
S+ P T++ +I HG + +A + F+ + C V+ YN+L C
Sbjct: 271 SIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDG 330
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
F RM R+G V D T+ L++ +C GK+R A++ + G P + + +++
Sbjct: 331 MKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHG 390
Query: 166 MIKQGSVPD-LETFNSLIETICKSGE--LGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+ G + + FN + +SGE LG+ A I I + K ++EA+ L C
Sbjct: 391 LCVNGEIGSAMVKFNDM-----RSGEKYLGIVA----YNIMIHGLCKADKVEEAWELFCR 441
Query: 223 LVEDGHK 229
L +G K
Sbjct: 442 LPVEGVK 448
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 47/198 (23%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
SV P L+ +I F G + +A +F+ + C V+ YN+L F +
Sbjct: 820 SVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDG 879
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
M +G V D T+ L++ +C +GK+ AQ ++ N+
Sbjct: 880 MKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQ-------------------KVFNR 920
Query: 166 MIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMID------- 214
M+ G PD+ T+N L++ +C +G+ L + D+ N++ + ++ +I
Sbjct: 921 MVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDK 980
Query: 215 --EAFRLLCNLVEDGHKL 230
EA+ L +L G KL
Sbjct: 981 VKEAWCLFRSLTRKGVKL 998
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 99 VLLYNSLHVCFVR-------------MIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFL 144
V++YN+L C + M +KG D T+ L+ C SG+ R+A L
Sbjct: 170 VVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARIL 229
Query: 145 QELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKS 188
++++ + NP V + +++ +KQG++ P+ T+NSLI +C
Sbjct: 230 RDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMH 289
Query: 189 GELGLCA---DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---GQFDDAFC 242
G L D+ +K P V + F VEDG KLF + G D F
Sbjct: 290 GRLYHAKKTFDLMASKGCFPNVVTYNTLINGF-CKSRRVEDGMKLFQRMYREGLVGDTFT 348
Query: 243 F 243
+
Sbjct: 349 Y 349
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSA 159
G D + TIL++ +C ++ A L ++ G++P + A
Sbjct: 95 GISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDA 154
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+V M+K G P++ +N+LI+ +CK+G++ + ++
Sbjct: 155 FSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALEL 192
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
F R+ +G PD RT+TI++ C +G REA E + + + G
Sbjct: 439 FCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDG 481
>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
Length = 521
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + ++ F + GL A F+K F+ + YN+L + + M
Sbjct: 246 TFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTM 305
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
R G PD +H IL+NA+ +G +A++ + + GF+P ++S
Sbjct: 306 QRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRV 365
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A+++V+ M + G+ PD +N+LI SG
Sbjct: 366 EEAEELVSAMERDGTKPDTLIYNALINAYGVSG 398
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 56/199 (28%)
Query: 63 FPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120
FP T+S ++I +G+ GL ++A ++F M GF P+
Sbjct: 311 FPDTVSHNILINAYGRAGLYEDAEKIFKS----------------------MQSAGFSPN 348
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---------------- 164
+++ +L++A+ +G++ EA+E + + G P ++N
Sbjct: 349 LKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEALLA 408
Query: 165 KMIKQGS---VPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVS 208
KM+K S PD+ T+N+LI+ ++G L L D T + +
Sbjct: 409 KMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYA 468
Query: 209 KEFMIDEAFRLLCNLVEDG 227
K+ + + +L ++E G
Sbjct: 469 KKKLYRKCTSILKKMLESG 487
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 38/139 (27%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
+L+I+ +GK I++A + FN+ C VP++ T +L
Sbjct: 108 NLLIDAYGKSLNIEDAEKTFNRMQEALC----------------------VPNEETFGVL 145
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGS 171
+N + +G +A+E ++ +G++P R A+ + + K
Sbjct: 146 INGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYEC 205
Query: 172 VPDLETFNSLIETICKSGE 190
P+++T+N +I K+GE
Sbjct: 206 EPNIDTYNRMIVIYGKAGE 224
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 42/189 (22%)
Query: 83 AVEVFNKCTAFNCQQCVLLYNSLHVCF------------VRMIRKGFVPDKR-THTILVN 129
A +F + C+ + YN + V + R +R+ P T T L+N
Sbjct: 193 AEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMN 252
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
A+ G REA+ + +L + + P A ++ M + G P
Sbjct: 253 AFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFP 312
Query: 174 DLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
D + N LI ++G G ++ +N + + A ++ ++EA L+
Sbjct: 313 DTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELV 372
Query: 221 CNLVEDGHK 229
+ DG K
Sbjct: 373 SAMERDGTK 381
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------FVRMIRK- 115
T + +I+ K G +D+A E+ ++ Q + YNS+ +C V+++ +
Sbjct: 881 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 940
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
G D T+T L++A+C SG+M +AQE L E+ KG P +
Sbjct: 941 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGML 1000
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++++N M+ +G P+ TFN L++ C
Sbjct: 1001 EDGEKLLNWMLAKGIAPNATTFNCLVKQYC 1030
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 25/186 (13%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++ EF + G+ N V +N F CQ + N H + M KG+ PD +++
Sbjct: 652 TAIIVFREFPEVGVCWN-VASYNIVIHFVCQLGRI--NEAHHLLLLMELKGYTPDVISYS 708
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
++N +C G++ + + ++++ KG P + A++ ++MI Q
Sbjct: 709 TVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQ 768
Query: 170 GSVPDLETFNSLIETICKSGELGLCA----DVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
G +PD + +L++ CK G++ + ++++ I+ P V I F + ++VE
Sbjct: 769 GILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDIT-PDVLTYTAIISGFCQIGDMVE 827
Query: 226 DGHKLF 231
G KLF
Sbjct: 828 AG-KLF 832
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 43/243 (17%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+WK IE MK L T II + + A E F++ ++Y +L
Sbjct: 723 VWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVD 782
Query: 106 HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C F M + PD T+T +++ +C G M EA + E+ +G P
Sbjct: 783 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEP 842
Query: 155 P----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------- 191
++ A ++ N MI+ G P++ T+ +LI+ +CK G+L
Sbjct: 843 DIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 902
Query: 192 ------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-HKLFPSLGQFDDAFCFF 244
GL ++ T + + K I+EA +L+ G + + DA+C
Sbjct: 903 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962
Query: 245 SEM 247
EM
Sbjct: 963 GEM 965
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 20/139 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI+ G P+ T+T L++ C G + A E L E+ G P + + +VN + K G+
Sbjct: 870 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 929
Query: 172 V----------------PDLETFNSLIETICKSGELGLCADVNTNKISI---PAVSKEFM 212
+ D T+ +L++ CKSGE+ ++ T + P + +
Sbjct: 930 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNV 989
Query: 213 IDEAFRLLCNLVEDGHKLF 231
+ F L ++EDG KL
Sbjct: 990 LMNGF-CLHGMLEDGEKLL 1007
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 39/184 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFN---------KCTAFNC---QQCVLLYNSLHVC---FV 110
T ++++ F HG++++ ++ N T FNC Q C+ N+L +
Sbjct: 986 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCI--RNNLKAATAIYK 1043
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
M +G PD +T+ LV C++ M+EA QE+ KGF+ V +
Sbjct: 1044 DMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRK 1103
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A+++ ++M + G D E F+ +T K D I + + +++D
Sbjct: 1104 KFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVD------PIDEIIENYLVD 1157
Query: 215 EAFR 218
E R
Sbjct: 1158 EQLR 1161
>gi|356534139|ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g60050-like [Glycine max]
Length = 480
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 57/268 (21%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
++W+ ++ M L +T +++I G+ GL + VE F K FN + YN+ L
Sbjct: 174 ALWRLVDEMVEKGLPATARTFNILIRTCGEAGLAKSLVERFIKSKTFNFRPFKHSYNAIL 233
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H V +++ GF D T+ I++ A GK+ + L E+ GF+
Sbjct: 234 HGLLVLNQYKLIEWVYQQLLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFS 293
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-- 195
P + A ++N M + G P + F +LI+ + ++G L C
Sbjct: 294 PDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYF 353
Query: 196 -----------DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------- 234
DV + I I++A ++ ++ + P++
Sbjct: 354 FDEMIKNGCIPDVVAYTVMITGYVVAGEIEKALKMYQYMIS--REQVPNVFTYNSIIQGL 411
Query: 235 ---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+FD+A EM+ K PN VY
Sbjct: 412 CMAGKFDEACSMLKEMKTKGCSPNSFVY 439
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
M+ L + P + SL+I K A VF C+ V +Y +L
Sbjct: 314 MEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGS 373
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F RM +GF PD T+++LVN C SG++ + E +KG
Sbjct: 374 MEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYAS 433
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFMIDEAFRLL 220
+++ + K G + D E +L E + + G CA D I A++K ID+A L
Sbjct: 434 LIDGLGKAGRIEDAE---NLFEEMSEKG----CARDSYCYNAIIDALAKHGKIDQALALF 486
Query: 221 CNLVEDG 227
+ E+G
Sbjct: 487 GRMEEEG 493
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 39/135 (28%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
II+ KHG ID A+ +F + C Q V T TIL++
Sbjct: 469 IIDALAKHGKIDQALALFGRMEEEGCDQTVY----------------------TFTILID 506
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
K EA +F ++ DKG P V S A ++++ + G +P
Sbjct: 507 GLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIP 566
Query: 174 DLETFNSLIETICKS 188
+ F +I T+CK+
Sbjct: 567 E-TAFEDMINTLCKA 580
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/215 (18%), Positives = 88/215 (40%), Gaps = 30/215 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----HVCFVRMIRKGF------- 117
+I+ FG GL++ + V+ + + YN L + F+ K F
Sbjct: 189 LIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGK 248
Query: 118 -VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
VPD T+ I++ +C +GK+++A E +++ K P + ++ +
Sbjct: 249 IVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSE------R 302
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFP 232
F++ + + E GL ++ + I + K+ EA+ + + + G + ++
Sbjct: 303 DFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYT 362
Query: 233 SL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+L G ++A F M+ + P+ Y+
Sbjct: 363 ALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYS 397
>gi|399107204|gb|AFP20366.1| At1g03560-like protein, partial [Capsella grandiflora]
gi|399107210|gb|AFP20369.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMTLFKRME 186
>gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa]
gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 46/193 (23%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------ 158
H+ F+ +RKG PD T L+ C S KM++A ++ + G P S
Sbjct: 83 FHLEFI--VRKGHKPDVAQATQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYTFLVN 140
Query: 159 ----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCA 195
A Q+V KM + G + T+NSL+ +CK G L GL
Sbjct: 141 NLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGLVP 200
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFC 242
+ T+ + A KE +DEA +LL ++ G K P+L G+ ++A
Sbjct: 201 NEFTHSFLLEAAYKERGVDEAMKLLDGIIAKGGK--PNLVSYNVLLTGLCKEGRTEEAIQ 258
Query: 243 FFSEMQIKTHPPN 255
FF ++ K PN
Sbjct: 259 FFRDLPSKGFNPN 271
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
+I KG P+ ++ +L+ C G+ EA +F ++L KGFNP V S
Sbjct: 228 IIAKGGKPNLVSYNVLLTGLCKEGRTEEAIQFFRDLPSKGFNPNVVSCNIILRSLCCEGR 287
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++V +M + P L T+N LI ++ G +
Sbjct: 288 WEEANELVAEMDSEERSPSLVTYNILIGSLASHGRI 323
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 90/236 (38%), Gaps = 67/236 (28%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I HG I +A +V ++ + Q +N + H+C +M
Sbjct: 309 TYNILIGSLASHGRIQHAFQVLDEMMRASFQPSAATFNPIISHLCKEGKADLVVKCLDQM 368
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------GFNPPVRS-------- 158
I P+ T + C G+++ A +Q L +K F V S
Sbjct: 369 IHHCCNPNDGTFNAIA-VLCEGGRVQRAFSIIQSLGNKQNSSTHDFYRGVISSLCRKGNT 427
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A Q++ +MI+ G VPD T++SLI +C G M+DEA
Sbjct: 428 YPAFQLLYEMIQSGFVPDPYTYSSLIRGLCVEG----------------------MLDEA 465
Query: 217 FRLLCNLVEDGHKLFPSLGQFDD---AFC----------FFSEMQIKTHPPNRPVY 259
+ L E+ ++ P LG F+ FC F M +K + PN Y
Sbjct: 466 LEIFRLLEENDYR--PILGNFNALILGFCKSGRTDLSLEIFEMMILKGYTPNETTY 519
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------RSAK 160
MI+ GFVPD T++ L+ C G + EA E + L + + P + +S +
Sbjct: 437 MIQSGFVPDPYTYSSLIRGLCVEGMLDEALEIFRLLEENDYRPILGNFNALILGFCKSGR 496
Query: 161 -----QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
++ MI +G P+ T+ L+E I E L A+V
Sbjct: 497 TDLSLEIFEMMILKGYTPNETTYTILVEGIAHEEEKELAAEV 538
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P T S +I G++D A+E+F + + + +N+L + F +
Sbjct: 446 PYTYSSLIRGLCVEGMLDEALEIFRLLEENDYRPILGNFNALILGFCKSGRTDLSLEIFE 505
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
MI KG+ P++ T+TILV + A E L+EL
Sbjct: 506 MMILKGYTPNETTYTILVEGIAHEEEKELAAEVLKEL 542
>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 50/224 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-----MIRKGFV------ 118
II +G+ L +NA+++ + +F Q+ V YNSL F+ +R+ FV
Sbjct: 87 IINFYGRARLPENALKLLVELPSFRVQRTVKSYNSLLSVFLMCKDFDKMRELFVGIEKLG 146
Query: 119 -PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQ 161
D T+ +L+ +C+SG++ +A + E++++G +P V + A +
Sbjct: 147 KADACTYNLLIRGFCASGRLDDASKVFDEMTNRGVSPNVITFGNLIYGFCLHLRLKEAFK 206
Query: 162 MVNKMIKQGSV-PDLETFNSLIETICKSGELGLC----ADVNTNKISI-PAVSKEFMIDE 215
+ M+K V P+ + SLI+ +CK+GEL L ++ NKI + PA+
Sbjct: 207 LKTDMVKVYRVYPNAYIYASLIKGVCKNGELSLAFRLKKEMIRNKIELDPAIYST----- 261
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L+ L + G K ++A + +M+ + + P+ Y
Sbjct: 262 ---LISGLFKAGRK--------EEALGVWEDMKERGYKPDTVTY 294
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 31/197 (15%)
Query: 46 LSMWKTIEL--MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
L +W+ ++ KPD++ T ++II F K + A + ++ C+ V+ YN
Sbjct: 276 LGVWEDMKERGYKPDTV-----TYNVIINLFCKDKDFEAAYRLLDEMVEKGCKPDVISYN 330
Query: 104 SL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+ + F M R+G PD ++ IL + +C+ + +EA L E+ K
Sbjct: 331 VILRELFEEGKRGEANDLFEDMPRRGCAPDVVSYRILFDGFCNGMQFKEAAFILDEMIFK 390
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDL--ETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
GF P S + VN++ +G DL FN+L E G +V+ ++++ V
Sbjct: 391 GFVPCSASICKFVNRLC-EGKNEDLLRSAFNTL--------EKGKLVNVDLWRMAVAMVF 441
Query: 209 KEFMIDEAFRLLCNLVE 225
K+ + +F L+ +L++
Sbjct: 442 KDDKLSSSFNLVDSLID 458
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 121/309 (39%), Gaps = 100/309 (32%)
Query: 27 HDIYAERTLNRLNLTLISELSMWKTIELMK---PDSLSVFPQTLSLIIEEFGKHGLIDNA 83
H++Y T NRL L+ + +T ++K P ++ T +++I+ K G +D A
Sbjct: 22 HNVY---TYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKA 78
Query: 84 VEVFNK--------------------CTAFNCQQCVLLYNSLH--------------VC- 108
E+ + C A N + + + S+ +C
Sbjct: 79 CELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCK 138
Query: 109 ----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
F +M +KG VP++ T+ +L+N +C K+ A L+E+ + G P
Sbjct: 139 ANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVT 198
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
V +A ++ +M++ G +P+L T+N+L+ +C++G
Sbjct: 199 YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG------------- 245
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKT 251
++DEA+ LL + E G + L L G+ D A F +
Sbjct: 246 ---------LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGD 296
Query: 252 HPPNRPVYA 260
PP+ Y+
Sbjct: 297 CPPDVVAYS 305
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T S +I+ K G + +A EVF + + V+ YNSL F M
Sbjct: 373 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 432
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
G +PD T+ L++ C +G+ EA ++ K NP V +
Sbjct: 433 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 492
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A+ + + M+KQ +PD+ TF++L+E C +G
Sbjct: 493 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 525
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR------------- 114
S +I K G +D A ++F K +C+ V+ + +L + R
Sbjct: 305 STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 364
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
+ P+ T++ L++ C +G++R+AQE + + +G P V S
Sbjct: 365 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 424
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A ++ +M G +PD+ T+N+LI+ +CK+G
Sbjct: 425 ALLLMEEMTATGCLPDIITYNTLIDGLCKTG 455
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 34/198 (17%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------- 110
+V P T S ++E + GL+D+A + + A +C V Y SL F
Sbjct: 506 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 565
Query: 111 -----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
RM ++G P+ T+T L++A+C +GK A L+E+ G P V + + ++
Sbjct: 566 RRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGG 625
Query: 166 MIKQGSVPDLETFNSLIETI-----CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
G DLE ++E + CK AD+ ++ + + + + A LL
Sbjct: 626 FCGTG---DLEEARKILERLERDENCK-------ADMFAYRVMMDGLCRTGRMSAALELL 675
Query: 221 CNLVEDG----HKLFPSL 234
+ + G H ++ +L
Sbjct: 676 EAIKQSGTPPRHDIYVAL 693
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
++PD S ++ K G ID A++VF + +C V+ Y++L
Sbjct: 262 LQPDKFS-----YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGR 316
Query: 106 --HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
C F +M PD T T L++ C +++EAQ+ L+ + D+ P
Sbjct: 317 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 376
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
VR A+++ +MI +G P++ T+NSLI C
Sbjct: 377 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 417
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K G A +F A C V+ Y+ L F M
Sbjct: 443 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 502
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+++ +PD T + LV +C++G + +A+ L+E+ +P V +
Sbjct: 503 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 562
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A++++ +M K+G P++ T+ +LI+ C++G+
Sbjct: 563 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
MK L+ T S +I F + +D A ++F + C ++ YN+L R
Sbjct: 187 MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 246
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M +G PDK ++ L+ C +GK+ A + ++ S+ P V +
Sbjct: 247 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 306
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKSGEL 191
++ + K G + PD+ TF +L++ +CK L
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRL 352
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 53/241 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------MIRK--- 115
+ + +IE F + G +D A+E+F + + L L C R M++K
Sbjct: 201 SYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGL--CDARRGEEGLYMLQKMKE 258
Query: 116 -GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-- 172
G+ P R + LV+ WC K EA++ L E+ D G P + +VN ++G +
Sbjct: 259 LGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSG 318
Query: 173 --------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIP 205
P++ T+N++++ C G E G+ DV T + I
Sbjct: 319 AVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIR 378
Query: 206 AVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPP 254
+ I+ AFRLL + +G + L +L G+ D+A F ++ + P
Sbjct: 379 GQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRP 438
Query: 255 N 255
N
Sbjct: 439 N 439
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV-CFVRMIR-- 114
T + +++ F G + A+ + ++ + V+ YN L H+ R++R
Sbjct: 337 TYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLM 396
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G D+ T+ +L++A C +GK+ EA L +G P + ++N
Sbjct: 397 EGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKF 456
Query: 165 --------KMIKQGSVPDLETFNSLIETICKS 188
KM+ G PD T++ IE +CK+
Sbjct: 457 DVACTFLEKMVSAGCAPDTYTYSPFIENLCKT 488
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK-------- 115
T + ++ + + G + AV VF C+ V YN++ C V + K
Sbjct: 302 TCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQM 361
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD T+ +L+ C G + A L+ + G + +++ + K G V
Sbjct: 362 RECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKV 421
Query: 173 ----------------PDLETFNSLIETICKSGEL 191
P+ TFN++I +CK G+
Sbjct: 422 DEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKF 456
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 23/151 (15%)
Query: 47 SMWKTIEL---------MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
S+WKTIEL MK +S+ + I+E F + +D + + +
Sbjct: 640 SVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPL 699
Query: 98 CVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
+Y SL CF + MI GF+P+ ++ L++ + + G+ A+E
Sbjct: 700 NEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIF 759
Query: 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
+ L K +N K +++ +I+QG PD+
Sbjct: 760 RGLRWKEYNTDEIVWKIIIDGLIRQGH-PDM 789
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R G+ PD T L+ +C + ++ AQ+ ++ +GF+ S ++ + G
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGR 214
Query: 172 V------------PDLETFNSLIETIC--KSGELGL 193
V PD+ T +L++ +C + GE GL
Sbjct: 215 VDEALELFRELEQPDMYTHAALVKGLCDARRGEEGL 250
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 53/243 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S +I+ GK G +D+A ++ K ++Y SL H + M
Sbjct: 476 TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM 535
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
+ G PD ++ +G+ + + +E++ GF P RS +++ ++K
Sbjct: 536 VHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLA 595
Query: 169 ------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
QG V D +N++I+ CKSG++ G V T
Sbjct: 596 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 655
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTH 252
I ++K +DEA+ L +G KL F +G+ D+A+ E+ K
Sbjct: 656 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 715
Query: 253 PPN 255
PN
Sbjct: 716 TPN 718
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 30/195 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM------------IRKGF 117
+I +G G D A + + A V+ YN + C + +++
Sbjct: 341 MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA 400
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----- 172
VP+ T+ IL++ C GK+ A E ++ G P V + M++++ K +
Sbjct: 401 VPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACS 460
Query: 173 -----------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR--L 219
P+ TF+SLI+ + K G + + + V + R
Sbjct: 461 IFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFF 520
Query: 220 LCNLVEDGHKLFPSL 234
C EDGHK++ +
Sbjct: 521 KCGRKEDGHKIYKEM 535
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 60/264 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC- 108
++ MK +SL ++ I+ FGK G +D + + F++ + + Y S+ +C
Sbjct: 253 LDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCK 312
Query: 109 ----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
F ++ + VP + ++ + S+GK EA L+ KG P V
Sbjct: 313 ANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIA 372
Query: 157 -------RSAKQMVNKMI------KQGSVPDLETFNSLIETICKSGEL------------ 191
K+ V + + K+ +VP++ T+N LI+ +C+ G+L
Sbjct: 373 YNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMER 432
Query: 192 -GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED--------GHKLFPSL-------G 235
GL +V T I I + K ++EA C++ E F SL G
Sbjct: 433 AGLFPNVLTVNIMIDRLCKAQKLEEA----CSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 488
Query: 236 QFDDAFCFFSEMQIKTHPPNRPVY 259
+ DDA+ + +M H P VY
Sbjct: 489 RVDDAYSLYEKMLDCGHVPGAIVY 512
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 29/166 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK---------CTAFNCQQCV 99
+ E K + + + S +I+ FGK G ID A + + +NC
Sbjct: 669 YMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 728
Query: 100 LL----YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
L+ N +CF M P++ T++IL+N C K +A F QE+ G P
Sbjct: 729 LVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPN 788
Query: 156 VRSAKQMVNKMIK----------------QGSVPDLETFNSLIETI 185
+ M++ + K G +PD ++N++IE +
Sbjct: 789 TITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGL 834
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
L N + F M +G V D + +++ +C SGK+ +A + L+E+ KG P V +
Sbjct: 594 LANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYG 653
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+++ + K + L+ L E ++ G+ +V I K IDEA+ ++
Sbjct: 654 SVIDGLAK---IDRLDEAYMLFE---EAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIM 707
Query: 221 CNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
L++ G L P++ + ++A F M+ PPN+ Y+
Sbjct: 708 EELMQKG--LTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYS 758
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 44/211 (20%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
VFP T + +I + K G ++ AV +F N + V+ YN+L F +
Sbjct: 598 GVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 657
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------- 158
MI + P+ ++ IL+N +C+ G + EA E+ +KGF + +
Sbjct: 658 NELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 717
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCAD 196
A + ++ M+ +G VPD T+N+LI K + GL D
Sbjct: 718 YCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPD 777
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
V T + + S++ + EA ++ ++E G
Sbjct: 778 VITYNVILNGFSRQGRMQEAELIMLKMIERG 808
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M KG PD T+ L+NA+C G + EA E + +S KG P V +
Sbjct: 384 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 443
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID- 214
AK ++++M+K G PD T+N L+ C++ + ++ +I S+ + D
Sbjct: 444 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM-----MDAERIFDEMPSQGVVPDL 498
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+F L L+ G D A +F +M+ P+ +Y
Sbjct: 499 VSFSALIGLLSKN-------GCLDQALKYFRDMKNAGLAPDNVIYT 537
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 56/242 (23%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
MK L+ +++I F ++G++ A++V ++ C V+ YN++ +C
Sbjct: 524 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKM 583
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F M +G PD T T L+N + G M +A +
Sbjct: 584 LSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFE---------------- 627
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFMID--- 214
MI++ PD+ T+N+LI+ CK E+ L D+ + +I +S +I+
Sbjct: 628 ---MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC 684
Query: 215 ------EAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNRP 257
EAFRL +VE G K + G A F S M +K P+
Sbjct: 685 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI 744
Query: 258 VY 259
Y
Sbjct: 745 TY 746
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 37/64 (57%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M G +PD T+ +++N + G+M+EA+ + ++ ++G NP + ++N + Q
Sbjct: 768 KMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQN 827
Query: 171 SVPD 174
++ +
Sbjct: 828 NLKE 831
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 59 SLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S ++P +S ++I + G + A ++++ + ++ N++ + R
Sbjct: 666 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 725
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M+ KG VPD T+ L+N + M A + ++ + G P V + ++
Sbjct: 726 KADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVIL 785
Query: 164 N----------------KMIKQGSVPDLETFNSLI 182
N KMI++G PD T+ SLI
Sbjct: 786 NGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 820
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 18/111 (16%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD + T + +I F K +D A + NK V+ YN + F R
Sbjct: 741 PDGI-----TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 795
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
MI +G PD+ T+T L+N + ++EA E+ +GF P
Sbjct: 796 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 42/224 (18%)
Query: 47 SMWKTIELMKPDSLS-VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ ++ V P +++ F ++ A+EV ++ + C+ ++ L
Sbjct: 140 AVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCL 199
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+R F P + T L+ WC GK+ EA+ L ++ + GF
Sbjct: 200 LDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFE 259
Query: 154 PPV----------RSAKQMVN------KMIKQGSVPDLETFNSLIETICKSGEL------ 191
P + +A +MV+ +M ++ P++ +F +LI+ +C ++
Sbjct: 260 PDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRV 319
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G AD T I K I + + LL N+++ GH
Sbjct: 320 FFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGH 363
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M G D T+T L++ +C GK+ + E L + +G P
Sbjct: 320 FFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEK 379
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ +++ +M K G PDL +N +I CK GE+
Sbjct: 380 KEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEI 418
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD +S + +I F K G D A +++ V+ Y+S+ +
Sbjct: 194 PDVVSY-----TTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMD 248
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------- 156
M++ G +P+ T+ +++ +CSS + +EA FL+++ G P V
Sbjct: 249 KAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLM 308
Query: 157 -------RS--AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
RS A+++ + M K+G PD+ T+ +L++ G L G+
Sbjct: 309 DYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIH 368
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAF 241
D + I I A +K+ +DEA + + + H L P++ G DDA
Sbjct: 369 PDHHVFNILICAYAKQEKVDEAMLVFSKMRQ--HGLNPNVVTYGAVIGILCKSGSVDDAM 426
Query: 242 CFFSEMQIKTHPPNRPVY 259
+F +M + PN VY
Sbjct: 427 LYFEQMIDEGLTPNIIVY 444
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + +++I + K +D A+ VF+K V+ Y ++
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412
Query: 106 -------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG- 151
+ F +MI +G P+ +T L+++ C K +A+E + E+ D+G
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472
Query: 152 ------FNPPVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
FN + S ++++ + M++ G P++ T+++LI+ C +G++
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM----- 527
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
DEA +LL ++ G K + + + DDA F
Sbjct: 528 -----------------DEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFK 570
Query: 246 EMQIKTHPPNRPVY 259
EM PN Y
Sbjct: 571 EMVSSGVSPNIITY 584
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G P+ T++ L++ +C +GKM EA + L + G P + ++N
Sbjct: 499 FDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCR 558
Query: 165 ------------KMIKQGSVPDLETFNSLIETI------CKSGEL-------GLCADVNT 199
+M+ G P++ T+N +++ + + EL G +++T
Sbjct: 559 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELST 618
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + DEA R+ NL
Sbjct: 619 YNIILHGLCKNNLTDEALRMFQNL 642
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 47/242 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-----QCVLLYN------ 103
M+ D + T + +++ K+G A ++F+ T + C LL
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351
Query: 104 --SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+H M+R G PD IL+ A+ K+ EA ++ G NP V +
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETIC------KSGEL-------G 192
++ + K GSV P++ + SLI ++C K+ EL G
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG 471
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQI 249
+C + I + KE + E+ +L +V G K P++ + D +C +M
Sbjct: 472 ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVK--PNVITYSTLIDGYCLAGKMDE 529
Query: 250 KT 251
T
Sbjct: 530 AT 531
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK---GFNPPVRSA 159
+++ + RM +PD + TIL+ C + +EA E L ++D G P V S
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSY 199
Query: 160 KQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
++N K+G S T++ +++ + DV T I A+ K +D+A
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDR-------RISPDVVTYSSIIAALCKGQAMDKAME 252
Query: 219 LLCNLVEDG 227
+L +V++G
Sbjct: 253 VLTTMVKNG 261
>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
Length = 1031
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-PVRSAKQMVNKMI 167
F +M+R+ P T+T L++ +C +G+ EA+ L E+ G P V AKQ++ M+
Sbjct: 357 FNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCML 416
Query: 168 KQGSVPDLETFNSLIETICKSG 189
G PD+ T+++LI +CK G
Sbjct: 417 ADGIDPDVITYSALINGMCKMG 438
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 29/174 (16%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+TL+ ++ KHG +D A+++ K M+ + +PD T+
Sbjct: 600 KTLNTLLVGICKHGTLDEALDLCEK----------------------MVTRNILPDTYTY 637
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIET 184
TIL++ +C GK+ A LQ + +KG P + ++N ++ +G V E
Sbjct: 638 TILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYM--FQEI 695
Query: 185 ICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
ICK G C N+ + K I+E RL+ N+ E+ +++PS ++
Sbjct: 696 ICKEGLYADCIAYNS---MMNGYLKGGQINEIERLMRNMHEN--EVYPSSASYN 744
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 38/240 (15%)
Query: 8 KTSKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMK---PDSLSVFP 64
K S Y A ++ R D A R L + +T + + K +++K D +
Sbjct: 366 KPSVATYTALIDGYCRNGRTD-EARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDV 424
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
T S +I K G+I E+ ++ +LY +L + C FV
Sbjct: 425 ITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVD 484
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-------KGFNPPVRSAKQMVN 164
+ R G V + H L+ ++ G + EA++F Q +S FN + S Q N
Sbjct: 485 IYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGN 544
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
M++ G PD+ T+ SL+ +C+ G L V + + + K IDE
Sbjct: 545 VLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL-----VQAKEFMVYLLEKACAIDE 599
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 42/190 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE--LSDKGFNPP-------------- 155
M+++G PD T+ +L+ C G + A +FL++ L + G P
Sbjct: 766 MVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKCRV 825
Query: 156 --VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTN 200
+ A ++ M G VP +S++ +CK G++ G+ + T
Sbjct: 826 GDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATF 885
Query: 201 KISIPAVSKEFMIDEAFRL-----LCNLVED---GHKLFPSLGQ---FDDAFCFFSEMQI 249
+ + KEF ID+AF L C L D + L L DA + EM+
Sbjct: 886 TTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKS 945
Query: 250 KTHPPNRPVY 259
K PN Y
Sbjct: 946 KGLLPNITTY 955
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPP 155
M+R G+ PD T+ L+ C G + +A+EF+ L +K +
Sbjct: 555 MVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGT 614
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A + KM+ + +PD T+ L++ CK G++
Sbjct: 615 LDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKI 650
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 32/169 (18%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG-LIDNAVEVFN------KCTAFNCQQC- 98
S+ +TI P +L ++ L++ + K G ++D A +F K + F+C
Sbjct: 147 SLLRTISRCDPTNLF----SVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNIL 202
Query: 99 ---VLLYNSLHV-CFVR-MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
V + S +V F++ + + F D T I++N+ C+ GK+ +A+ LQ++ +
Sbjct: 203 NALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLP 262
Query: 154 PPV---------------RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
V +SA ++++ M K G DL T+N +I+ +CK
Sbjct: 263 NAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCK 311
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 29/169 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFV 110
+E MK L T + +I+ + G ++ A + +K V YN L H F+
Sbjct: 284 LEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFL 343
Query: 111 ------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--- 155
M KG VPD T+ IL+N +C G +++A E+ KG P
Sbjct: 344 DCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVT 403
Query: 156 -------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++ A + K++++G PDL FN+LI+ C +G +
Sbjct: 404 YTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNM 452
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 48/228 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HVCFVRMIR--- 114
T +++I K G + A E A + V+ YN++ V RMI
Sbjct: 193 TFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLM 252
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--------- 163
+G PD T+ ++ C GK+ EA L+++ + G P + ++
Sbjct: 253 KCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNL 312
Query: 164 -------NKMIKQGSVPDLETFNSLIETI---CKSGEL-GLCADVNTNKISIPAVSKEFM 212
+KM+++G +P + T+N LI + CK E G+ +++ + +V+ +
Sbjct: 313 EMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNIL 372
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
I+ R G AF EM K P R Y
Sbjct: 373 INGYCR---------------CGNVKKAFTLHDEMISKGIQPTRVTYT 405
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HVCFVRMIRK------- 115
T + +I K G + A ++F K ++++N+L H M R
Sbjct: 403 TYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEM 462
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
VPD+ T L+ C GK+ A+E ++E+ +G P +
Sbjct: 463 DQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDM 522
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A ++ ++M+ G P L T+N+LI+ +CK+ E
Sbjct: 523 KDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEE 556
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 34/177 (19%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------- 108
PDS+ T +++I + + G + A + ++ + Q + Y SL
Sbjct: 364 PDSV-----TYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMK 418
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------- 154
F +++RKG PD L++ C++G M A L+E+ P
Sbjct: 419 QADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLM 478
Query: 155 -------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISI 204
V +A++++ +M +G PD ++N+LI K G++ V +SI
Sbjct: 479 QGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSI 535
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 44/195 (22%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------ 154
V + M R T I++N C GK+++A+EF+ + G P
Sbjct: 177 VLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGY 236
Query: 155 ----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPA 206
V A+ + + M +G PD T+ S I +CK G+L G+ + + A
Sbjct: 237 CSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTA 296
Query: 207 VSKEFMIDE---------AFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFF 244
V+ +ID AF +V +G L P++ + D+A
Sbjct: 297 VTYNTLIDGYCNKGNLEMAFDYRDKMVREG--LMPTVSTYNMLIHALFLDCKMDEADGII 354
Query: 245 SEMQIKTHPPNRPVY 259
EM K P+ Y
Sbjct: 355 KEMSEKGLVPDSVTY 369
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 30/238 (12%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T +++I+ + G++D A+ +FN+ + V+ Y ++
Sbjct: 378 VDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTV 437
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G VPDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 438 IAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 497
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+ ++N + K G V D + L + GL D + +
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNV------GLHPDAVVYNMLMDGYCLVGK 551
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+++A R+ +V G + + +G+ D+ F EM K P+ +Y
Sbjct: 552 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 609
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R+ +PD L+ + C GK++EA++ ++ KG NP V S M+N
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYAT 373
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G + D+ L+ G+ G+ D+ T + I A + M+D+A + + + G
Sbjct: 374 KGCLVDMTDLFDLM-----LGD-GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 427
Query: 229 K-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K +G+ DDA F++M + P++ Y
Sbjct: 428 KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAY 469
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--NPPVRSAKQ 161
+L + R G VPD ++ IL+ + C+ GK +A + L+ +++ G +P V +
Sbjct: 167 ALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNT 226
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKS 188
+++ K+G V PDL T++S++ +CK+
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKA 269
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRM 112
T S+++ K+ D A+ +F + A N + ++ N++ F +
Sbjct: 643 TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 702
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G VP T++I++ G + EA++ + + G P R +V +++K+ +
Sbjct: 703 SRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEI 762
Query: 173 PDLETFNSLIE 183
+ S I+
Sbjct: 763 VRAGAYLSKID 773
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 93/242 (38%), Gaps = 58/242 (23%)
Query: 77 HGL-----IDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRMIRKGFV 118
HG+ +D A+E+F + C+ +N L H RM G V
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV 287
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQM 162
PD T++ L++ CS ++ +A+ L+++ + P V + A+++
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
++ M+ G PD+ T+N+L+ C++G+ GL +V T + + K
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407
Query: 210 EFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
+ EA + + G F S GQ D F EM P+ V
Sbjct: 408 ANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVV 467
Query: 259 YA 260
Y
Sbjct: 468 YG 469
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 58/224 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+ PDS S ++I+ K G +++A ++F K + Y SL +C
Sbjct: 6 VSPDSWS-----YGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F M R+G P T+ ++++A C G + EA +
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACD------------------- 101
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++ KMI+ G VPD+ T+N++++ +CKSG + + +E RL C
Sbjct: 102 LIKKMIEDGHVPDVVTYNTVMDGLCKSGRV---------------EEALLLFNEMERLGC 146
Query: 222 NLVEDGHKLFPSLG-----QFDDAFCFFSEMQIKTHPPNRPVYA 260
H LG + D A F EM+ + PP+ Y
Sbjct: 147 TPNRRSHNTI-ILGLCQQSKIDQACQVFHEMEARDIPPDSWSYG 189
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 34/164 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
PDS S ++I+ K G ++ A ++F + + YN + +C
Sbjct: 183 PDSWS-----YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLD 237
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
F M KG P + T IL++A C GKM EA L+ ++D G P V +
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLI 297
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+ ++ M+K+ P + T N+LI +CK+G +
Sbjct: 298 SGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 341
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 66/239 (27%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T ++II+ K G+++ A ++ K MI G VPD T
Sbjct: 80 PVTYNVIIDASCKRGMLEEACDLIKK----------------------MIEDGHVPDVVT 117
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
+ +++ C SG++ EA E+ G P RS ++ + +Q +
Sbjct: 118 YNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEME 177
Query: 173 -----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
PD ++ LI+ + K+G+L G+ T + I + + +D
Sbjct: 178 ARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLD 237
Query: 215 EAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
EA L ++ G + PS G+ D+AF M H P+ Y+
Sbjct: 238 EALELFKSMRSKGCR--PSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYS 294
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 53/174 (30%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M + PD ++ IL++ +GK+ +A++ Q+L G P +
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A+++ M ++G P T+N +I+ CK G M++E
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVIIDASCKRG----------------------MLEE 98
Query: 216 AFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNR 256
A L+ ++EDGH P + G+ ++A F+EM+ PNR
Sbjct: 99 ACDLIKKMIEDGH--VPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNR 150
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 31/203 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I K G I A EV + + V+ YN+L R M
Sbjct: 327 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 386
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G P+ T+T LV+ C + ++ EA ++ G P V
Sbjct: 387 VARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQV 446
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
++ +M+ G PD + +L +CKSG ++ + ++ E DE
Sbjct: 447 DGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEI--LREGRESLRSEAWGDEV 504
Query: 217 FRLLCNLVEDGHKLFPSLGQFDD 239
+R + + D K+ +LG D
Sbjct: 505 YRFAVDGLLDAGKMEMALGFVRD 527
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 85/214 (39%), Gaps = 69/214 (32%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+ PDS S ++I+ K G +++A +F K + Y SL +C
Sbjct: 319 VSPDSWS-----YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 373
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F M R+G P T+ ++++A C G + EA +
Sbjct: 374 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACD------------------- 414
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGE---------------------------LGLC 194
++ KMI+ G VPD+ T+N++++ +CKS LGLC
Sbjct: 415 LIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLC 474
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I + +DEAFRLL + +DGH
Sbjct: 475 -----QQSKIDQACQRGKLDEAFRLLKRMTDDGH 503
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
RM G VPD T++ L++ CS ++ +A+ L+++ + P V
Sbjct: 497 RMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAG 556
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A+++++ M+ G PD+ T+N+L+ C++G+ GL +V T
Sbjct: 557 RIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYT 616
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIK 250
+ + K + EA + + G F S GQ D F EM
Sbjct: 617 ALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCA 676
Query: 251 THPPNRPVYA 260
P+ VY
Sbjct: 677 GISPDHVVYG 686
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 52/173 (30%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNK--------------------CTAFNCQQCVLLYN 103
P T +++I+ K G+++ A ++ K C + ++ +LL+N
Sbjct: 393 PVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFN 452
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILV---------NAWCSSGKMREAQEFLQELSDKGFNP 154
+ R G P++R+H ++ + C GK+ EA L+ ++D G P
Sbjct: 453 EME-------RLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVP 505
Query: 155 PVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V + A+ ++ M+K+ P + T N+LI +CK+G +
Sbjct: 506 DVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 558
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 31/203 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I K G I A EV + + V+ YN+L R M
Sbjct: 544 TQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDM 603
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G P+ T+T LV+ C + ++ EA ++ G P V
Sbjct: 604 VARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQV 663
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
++ +M+ G PD + +L +CKSG ++ + ++ E DE
Sbjct: 664 DGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEI--LREGRESLRSEAWGDEV 721
Query: 217 FRLLCNLVEDGHKLFPSLGQFDD 239
+R + + + K+ +LG D
Sbjct: 722 YRFAVDGLLEAGKMEMALGFVRD 744
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M ++G P T ++ WC+ G+ EA + L ++ +P
Sbjct: 1 MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFS-LMEECHSPYPDVYNVLIDSLSKRQE 59
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ K+MV M+ +G PD TF +++ +CK+G++
Sbjct: 60 TEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKM 95
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 42/197 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +++ F K +D A + C V+ Y +L F R M
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDM 328
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G PD T+ L++ C +GK+ EA E L+ + +K P V + +VN + K G V
Sbjct: 329 FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKV 388
Query: 173 ----------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
P+L TFN++I+ CK+G E+ DV T
Sbjct: 389 DDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTL 448
Query: 204 IPAVSKEFMIDEAFRLL 220
I K + +AF +L
Sbjct: 449 IDGYCKANRMQDAFAIL 465
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 25/147 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK-------GFV 118
T + +I+ F K G +D +V +C V+ Y++L + + R G
Sbjct: 409 TFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGIS 468
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-----------------AKQ 161
PDK +++ ++ CS+GK+ EAQE + ++ +G PP S A +
Sbjct: 469 PDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGC-PPTSSHYALIIGGLCDVERGDEALK 527
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKS 188
M+ M ++G P+L T++ LI +CK+
Sbjct: 528 MLQVMSERGCEPNLYTYSILINGLCKT 554
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 49/205 (23%)
Query: 77 HGL-----IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------IRKGFV 118
HGL ID A ++ ++ +C +YN L +M + + V
Sbjct: 100 HGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCV 159
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ--------- 169
PD T+T L+ C + + EA++ ++++ + G P + ++N + KQ
Sbjct: 160 PDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKL 219
Query: 170 -------GSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSK 209
G PD ++N+++ +C+SG E DV T + K
Sbjct: 220 LEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCK 279
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSL 234
+DEA RLL ++V G + P++
Sbjct: 280 VSKMDEAERLLEDMV--GRRCAPTV 302
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S++I K +++A+ V + C V Y SL + CF M
Sbjct: 543 TYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTM 602
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
G PDK + IL++ +C SG + +A E +Q + +KG NP
Sbjct: 603 RDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNP 644
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M+ KG VPD T+T L++ +C KM A + + + D G P
Sbjct: 567 MLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGN 626
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
V A +++ M+++G PD T+ SL+ ++
Sbjct: 627 VEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 33/146 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M+ + F PD TH ++ A+C G + A L K + P
Sbjct: 50 MLARRFSPDVITHNTILKAYCQIGDLDRA---LSHFRGKMWCSPTAFTYCILIHGLCQCQ 106
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNK 201
+ A Q++++MI++ PD +N LI +CK G E DV T
Sbjct: 107 RIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYT 166
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG 227
I + +DEA +L+ + E G
Sbjct: 167 SLIVGCCQTNALDEARKLMEKMKESG 192
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +G P+ T++IL+N C + ++ +A L + +KG P V +
Sbjct: 532 MSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINK 591
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A Q M G PD +N LI C+SG
Sbjct: 592 MDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSG 625
>gi|341605775|gb|AEK82990.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605807|gb|AEK83006.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALXKHGKVDEAMXLFKRME 184
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 42/224 (18%)
Query: 47 SMWKTIELMKPDSLS-VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ ++ V P +++ F ++ A+EV ++ + C+ ++ L
Sbjct: 173 AVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCL 232
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+R F P + T L+ WC GK+ EA+ L ++ + GF
Sbjct: 233 LDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFE 292
Query: 154 PPV----------RSAKQMVN------KMIKQGSVPDLETFNSLIETICKSGEL------ 191
P + +A +MV+ +M ++ P++ +F +LI+ +C ++
Sbjct: 293 PDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRV 352
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G AD T I K I + + LL N+++ GH
Sbjct: 353 FFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGH 396
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M G D T+T L++ +C GK+ + E L + +G P
Sbjct: 353 FFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEK 412
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ +++ +M K G PDL +N +I CK GE+
Sbjct: 413 KEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEI 451
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 35/209 (16%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMK---PDSLSVFPQTLSLIIEEFGKH 77
I+N V DI T N L L + K +E+ K + + T ++II K
Sbjct: 258 ISNGVSPDIV---TCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKG 314
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTH 124
+D A ++FN + V+ YN L FV+ M+ KG +P T+
Sbjct: 315 NKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTY 374
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIK 168
+V+ +C ++ EA++ + + +G +P V + ++ ++M +
Sbjct: 375 NSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQ 434
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADV 197
+G V D T+N+LI CK G+L D+
Sbjct: 435 RGLVADTITYNALIHGFCKVGDLNGAQDI 463
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KG P+ T+ +++ +CS GK +A++ L+++ ++ +P V + ++N +K
Sbjct: 103 FTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVK 162
Query: 169 QGSVPDLE----------------TFNSLIETICKSGEL 191
+G V E T++S+I+ CK L
Sbjct: 163 EGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRL 201
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
MI + PD T + L+NA+ GK+ A+E +E+ + P
Sbjct: 141 MIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSR 200
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+ AK M + M+ +G PD+ T N+LI+ C++
Sbjct: 201 LEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRA 233
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 45/231 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S +I F K G + A E++ + N + Y+S+ F + M
Sbjct: 152 TFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLM 211
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG PD T L++ C R + + G V A+ + +MI G
Sbjct: 212 VSKGCSPDIITLNTLIDGCC-----RAKRHLIHGFCQVG---NVNVAQDLFQEMISNGVS 263
Query: 173 PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD+ T N+L+ +C++G+L + D T I I + K +DEA+ L
Sbjct: 264 PDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDL 323
Query: 220 LCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+L +G + +F G F A + EM K P+ Y
Sbjct: 324 FNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTY 374
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 34/174 (19%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ +G PD T+ +VN C G A L+++ + V +V+++ K G
Sbjct: 35 RMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDG 94
Query: 171 S----------------VPDLETFNSLIETICKSG-------------ELGLCADVNTNK 201
+ P++ T+N +I+ C G E + DV T
Sbjct: 95 NHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFS 154
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQIKTH 252
I A KE + A L ++ +FP+ + D FC S ++ H
Sbjct: 155 ALINAFVKEGKVSGAEELYREMLR--RNIFPTTITYSSMIDGFCKHSRLEDAKH 206
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 49/179 (27%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F +M +KG VP++ T+ +L+N +C K+ A L+E+ + G P
Sbjct: 30 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 89
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
V +A ++ +M++ G +P+L T+N+L+ +C++G +
Sbjct: 90 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG----------------------L 127
Query: 213 IDEAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+DEA+ LL + E G + L L G+ D A F + PP+ Y+
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYS 186
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T S +I+ K G + +A EVF + + V+ YNSL F M
Sbjct: 254 TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM 313
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
G +PD T+ L++ C +G+ EA ++ K NP V +
Sbjct: 314 TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERI 373
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A+ + + M+KQ +PD+ TF++L+E C +G
Sbjct: 374 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAG 406
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------- 110
+V P T S ++E + GL+D+A + + A +C V Y SL F
Sbjct: 387 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 446
Query: 111 -----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
RM ++G P+ T+T L++A+C +GK A + L+E+ G P V + + ++
Sbjct: 447 RRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGG 506
Query: 166 MIKQGSVPDLETFNSLIETI-----CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
G DLE ++E + CK AD+ ++ + + + + A LL
Sbjct: 507 FCGTG---DLEEARKMLERLERDENCK-------ADMFAYRVMMDGLCRTGRMSAALELL 556
Query: 221 CNLVEDG----HKLFPSL 234
+ + G H ++ +L
Sbjct: 557 EAIKQSGTPPRHDIYVAL 574
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR------------- 114
S +I K G +D A ++F K +C+ V+ + +L + R
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
+ P+ T++ L++ C +G++R+AQE + + +G P V S
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A ++ +M G +PD+ T+N+LI+ +CK+G
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGLCKTG 336
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 34/161 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
++PD S ++ K G ID A++VF + +C V+ Y++L
Sbjct: 143 LQPDKFS-----YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGR 197
Query: 106 --HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
C F +M PD T T L++ C +++EAQ+ L+ + D+ P
Sbjct: 198 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 257
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
VR A+++ +MI +G P++ T+NSLI C
Sbjct: 258 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 298
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ K G A +F A C V+ Y+ L F M
Sbjct: 324 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 383
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+++ +PD T + LV +C++G + +A+ L+E+ +P V +
Sbjct: 384 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 443
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A++++ +M K+G P++ T+ +LI+ C++G+
Sbjct: 444 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
MK L+ T S +I F + +D A ++F + C ++ YN+L R
Sbjct: 68 MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M +G PDK ++ L+ C +GK+ A + ++ S+ P V +
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKSGEL 191
++ + K G + PD+ TF +L++ +CK L
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRL 233
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 35/171 (20%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
L+++E + GL N V F C+Q + ++ + F +M+ G +P+ T+ L+
Sbjct: 63 LLLKEMKESGLAPNVVTYSTVIHGF-CRQTKV--DTAYKLFRQMVENGCMPNLVTYNTLL 119
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+ C +G M EA E L E+ ++G P D ++++L+ +CK+
Sbjct: 120 SGLCRNGLMDEAYELLDEMRERGLQP-------------------DKFSYDTLMAGLCKT 160
Query: 189 GEL------------GLC-ADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
G++ G C DV I + K +DEA +L + E+
Sbjct: 161 GKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMREN 211
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 43/161 (26%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLI 182
T TI+++ C + ++ EA + KM K+G+VP+ T+N LI
Sbjct: 9 TWTIMIDGLCKANRLPEATTYFA-------------------KMKKKGTVPNEWTYNVLI 49
Query: 183 ETICK-------------SGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-- 227
CK E GL +V T I ++ +D A++L +VE+G
Sbjct: 50 NGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 109
Query: 228 ------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ L L G D+A+ EM+ + P++ Y
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSY 150
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M +G PD T+ L+N C GK+ +A+E L E+ +KG +P V S
Sbjct: 179 FREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQ 238
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-------------LCADVNT 199
A +++ +MI G P++ T++SL++ +CKSG L ++ T
Sbjct: 239 SNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVT 298
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLG-------------QFDDAFCFFSE 246
I + KE EA +L + G K P G + +A F E
Sbjct: 299 YSTLINGLCKEGKHREAVEILDRMRLQGLK--PDAGMYGRIISGLCAACNYQEAANFIDE 356
Query: 247 MQIKTHPPNRPVYA 260
M + PNR +
Sbjct: 357 MALGGISPNRASWT 370
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 77 HGL-----IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFV 118
HGL +D A+E+ + + V Y+SL + M+R+ +
Sbjct: 234 HGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLL 293
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
P+ T++ L+N C GK REA E L + +G P
Sbjct: 294 PNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKP 329
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 75/206 (36%), Gaps = 52/206 (25%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E MK + V I +G+ +A+ VF+K F +
Sbjct: 73 LERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVK--------------- 117
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
P ++++ + + ++ A F +E+ +KG P V
Sbjct: 118 -------PTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEE 170
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNK 201
SA ++ +M +G PD T+ +LI +CK G E GL V +
Sbjct: 171 TVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYT 230
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG 227
I + + +DEA LL ++ +G
Sbjct: 231 SLIHGLCQSNNLDEAIELLEEMIING 256
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 36/167 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
+ M+ K PD T+ L+N +C GK+++A +++ + NP
Sbjct: 264 YSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCK 323
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
V+ AK + M+KQG PD+ T+NSL++ C E+ G+ A+V +
Sbjct: 324 EGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRS 383
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHK-LFPSLGQFD---DAFC 242
I I K M+D+A +L E HK +FP++ + D C
Sbjct: 384 YSIMINRFCKIKMVDQAMKL---FKEMHHKQIFPNVITYSSLIDGLC 427
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 71/272 (26%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S +FP T + +I F G + +A+ +FNK T+ N V +N L F +
Sbjct: 269 SKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVK 328
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M+++G PD T+ L++ +C ++ +A+ +S +G VRS M+
Sbjct: 329 EAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMI 388
Query: 164 N-----KMIKQGS-----------VPDLETFNSLIETICKSGELGLCADVN--------- 198
N KM+ Q P++ T++SLI+ +CKSG + ++N
Sbjct: 389 NRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQ 448
Query: 199 --------------------TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-------- 230
T I I + K +++A + +L+ G+ +
Sbjct: 449 PDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVM 508
Query: 231 ---FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F + G FD+A S+M+ PN Y
Sbjct: 509 IHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTY 540
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 29/144 (20%)
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM------ 166
+ KG VPD+ T+ I+++A+C G + A F ++ + F P V + ++N +
Sbjct: 551 VEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKL 610
Query: 167 ----------IKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+++G D+ T+N+LI+++CK G++ GL D T +
Sbjct: 611 DKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVV 670
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
+ A+S+ +EA +L L + G
Sbjct: 671 LSALSEAGRSEEAHNMLHKLADSG 694
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 52/206 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
MK D ++ T + ++ F + G I A +V TA+
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAY--------------------- 307
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------VR 157
GF PD RT+ +L C +GK+ EA E+ G P
Sbjct: 308 -GFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSS 366
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A +++ +M +G P L T N +++++CK G+L GL DV T I
Sbjct: 367 DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLI 426
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKL 230
A K + +AF L+ +V G K+
Sbjct: 427 DAYCKAGNVAKAFTLMDEMVGKGLKM 452
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 42/206 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++++ K G ++ A+ K V+ YN+L + + M
Sbjct: 386 THNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEM 445
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ KG D T ++ C + +A+E L +GF P S
Sbjct: 446 VGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNP 505
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A ++ ++MI++ +P + T+N+LI+ +C+ L GL D T I
Sbjct: 506 EPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNII 565
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK 229
I A KE ++ AFR +VE+ K
Sbjct: 566 IHAYCKEGDLENAFRFHNKMVENSFK 591
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 49/176 (27%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
+MI + +P T+ L+ C +++EA + L E +KG P
Sbjct: 514 QMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEG 573
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ +A + NKM++ PD+ T N+L+ +C G+L D
Sbjct: 574 DLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKL----------------------D 611
Query: 215 EAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
+A +L + VE G K L S+ G D A FF +M++K P+ Y
Sbjct: 612 KALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTY 667
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 38/120 (31%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSA 159
G PD T+ L+NA C G + EA+ L + G P ++ A
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQA 297
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++V M G PDL T+N L +C++G+ +DEAFRL
Sbjct: 298 TKVVESMTAYGFEPDLRTYNVLAMGLCQAGK----------------------VDEAFRL 335
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 95/245 (38%), Gaps = 54/245 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S +++ K G +++AV V + C + YN+L F + M
Sbjct: 280 TYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREM 339
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ GF P T+T L + C SG+ EA E L ++ +G P + +V+ + K G V
Sbjct: 340 LEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRV 399
Query: 173 -----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
P + +++LI+ +CK+G++ G DV T I
Sbjct: 400 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSI 459
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKT 251
I + ID L + E G L L + D+AF F +M+
Sbjct: 460 LINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDG 519
Query: 252 HPPNR 256
P+R
Sbjct: 520 LSPDR 524
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 56/250 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTA-FNCQQCVLLYNSLHVCFVR------------- 111
T + +I+ K G I+NA+ +++ F + V+ Y++L R
Sbjct: 67 TYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEE 126
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M +G P+ T+ LVNA G+ +EA L++++ G P
Sbjct: 127 MAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGE 186
Query: 156 VRSAKQMVNK--MIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTN 200
+ +A ++V++ MI+ G PD+ TFNS+++ +CK E G +V T
Sbjct: 187 IEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTY 246
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQI 249
I +SK +DEA +LL +VE G + +G+ +DA +M+
Sbjct: 247 STLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRD 306
Query: 250 KTHPPNRPVY 259
P+ Y
Sbjct: 307 AGCLPDAVTY 316
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 47/214 (21%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK- 115
+++P T +I+ GK + A ++F + A C V+ YN++ +C I
Sbjct: 25 AIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENA 84
Query: 116 -----------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
GF P T++ L++ C ++ + + L+E++ +G P + +VN
Sbjct: 85 LTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVN 144
Query: 165 KMIKQGSV----------------PDLETFNSLIETICKSGEL---------------GL 193
++ QG P+L TF +I+ +CK GE+ GL
Sbjct: 145 ALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGL 204
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
DV T + + KE I +A + +E G
Sbjct: 205 SPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 238
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M+ K PD T+ L++ +++EA + +E KG +P V + M++ + K
Sbjct: 18 FKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCK 77
Query: 169 QGSV-----------------PDLETFNSLIETICKSGEL 191
G + P + T+++LI+ +C+ E+
Sbjct: 78 CGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEV 117
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +++ K I +A VF + C+ V+ Y++L +M
Sbjct: 210 TFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKM 269
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ G + T++ +V+ G+M +A L+++ D G P +
Sbjct: 270 VELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRL 329
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
R A ++ +M++ G P + T+ +L +C+SG
Sbjct: 330 REAVGLLREMLEAGFHPSVVTYTTLCHGLCRSG 362
>gi|222631493|gb|EEE63625.1| hypothetical protein OsJ_18442 [Oryza sativa Japonica Group]
Length = 390
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ G PD T++ L++ CS+G++ EA L + ++G P
Sbjct: 1 MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGR 60
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+ AK+++N MI G P T+N L+E +CK G G DV T
Sbjct: 61 IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSS 120
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
+ + K ID++F L+ ++ +G
Sbjct: 121 YMDGLCKAGRIDKSFALVDKMLSNG 145
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
+M+ G P + T IL++ C S A+ L+ ++ G++ V
Sbjct: 140 KMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEH 199
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
S ++ M K+G P+ TFN ++ ++CK G L
Sbjct: 200 RWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRL 236
>gi|341605781|gb|AEK82993.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605783|gb|AEK82994.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|341605725|gb|AEK82965.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHXMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 95/248 (38%), Gaps = 49/248 (19%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-----MIRK 115
S P + ++ HGL+D+AV + N + + R ++R+
Sbjct: 131 SALPSVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRR 190
Query: 116 GF----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
F VP+ T I+++ C G++ EA+ + G +P V
Sbjct: 191 LFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGD 250
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+Q+V++M K G D+ T+N+LI K G + G+ A+V T
Sbjct: 251 LEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFST 310
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKT 251
+ A KE ++ EA +L + G + SL G+ DDA EM +
Sbjct: 311 FVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQG 370
Query: 252 HPPNRPVY 259
PN Y
Sbjct: 371 LVPNVVTY 378
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ +GK G ++ ++ ++ C V+ YN+L CF + M
Sbjct: 237 TYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEM 296
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
R+G V + T + V+A+C G ++EA + ++ +G P +
Sbjct: 297 KRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRL 356
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++++M+ QG VP++ T+ +++ +CK G++
Sbjct: 357 DDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKV 391
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 40/189 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M G P+ +T +++A +GK EA L ++ D GF P V + +++ + K G
Sbjct: 470 KMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAG 529
Query: 171 SV----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
S+ P+++ + +LI+ CK G L G+ D
Sbjct: 530 SISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYT 589
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIK 250
I K+ + +AF L ++E G +L F ++ +A SEM
Sbjct: 590 SLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGT 649
Query: 251 THPPNRPVY 259
P++ VY
Sbjct: 650 GITPDKTVY 658
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 43/204 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+ K G + A +F + A C V+ YNSL + + M
Sbjct: 202 TFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEM 261
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
+ G D T+ L+N + G+M +A + E+ +G V
Sbjct: 262 RKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLV 321
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+ A ++ +M +G +P+ T+ SL++ CK+G L GL +V T +
Sbjct: 322 QEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 381
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
+ + KE + EA +L +L+E G
Sbjct: 382 VDGLCKEGKVAEADNVL-SLMERG 404
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRM 112
T S ++ F K GL+ A+++F + Y SL V M
Sbjct: 307 TFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM 366
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----------------FNPPV 156
+ +G VP+ T+T++V+ C GK+ EA L + G N
Sbjct: 367 VHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNS 426
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A ++N+M +G D+ + +LI +CK
Sbjct: 427 ERALDLLNQMKNKGMELDVSLYGTLIWGLCK 457
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 17/151 (11%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M G P+ + +T L++ +C G + +A + E+ DKG + +++ +K
Sbjct: 538 FNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMK 597
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG- 227
Q ++ D + K E GL D+ I M+ EA +L ++ G
Sbjct: 598 QANLQDAFALKT------KMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGI 651
Query: 228 ----------HKLFPSLGQFDDAFCFFSEMQ 248
+ + LG ++A +EM+
Sbjct: 652 TPDKTVYNCLIRKYQKLGNMEEASSLQNEME 682
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
Q + +I+ F K G ++ A+ + N+ ++Y SL +++
Sbjct: 551 QAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTK 610
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI G D +T ++ +C+ M+EA+ L E+ G P ++ K K G+
Sbjct: 611 MIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGN 670
Query: 172 VPDLETFNSLIETICKS 188
+ + + + +E++ S
Sbjct: 671 MEEASSLQNEMESVLSS 687
>gi|356509257|ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49240-like [Glycine max]
Length = 631
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 99/216 (45%), Gaps = 28/216 (12%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
M K E +K LSV + ++I++ + G + A+EVF K + C L +N+L
Sbjct: 331 MMKEHEPLK--RLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSFNNLID 388
Query: 106 HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C + M KG PD+ T+ +L++A + +A + +++ D G P
Sbjct: 389 RLCDNGRIVEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMVDSGLRP 448
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ ++V ++K G + + + F E + K L DV + + + +S E +D
Sbjct: 449 NLAVYNRLVGGLVKVGKIDEAKGF---FELMVKK----LKMDVTSYQFIMKVLSDEGRLD 501
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250
E +++ L++D FD+ F F + +++
Sbjct: 502 EMLKIVDTLLDDNGV------DFDEEFQEFVKGELR 531
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ F ++GL+D +E+ + M+ G +PD T+T
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQ----------------------MLSHGCMPDVITYT 395
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++N +C G + EA L+ +S G P S A++++++MI+Q
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455
Query: 170 GSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+ TFN+LI +CK G EL G D+ + I + K +EA
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515
Query: 217 FRLLCNLVEDG 227
LL +V G
Sbjct: 516 LELLNVMVNKG 526
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 103/294 (35%), Gaps = 88/294 (29%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS----- 104
+ +E M ++ +L++ + G +D AV + K F C+ ++ YN+
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226
Query: 105 -------------------------------------------LHVCFVRMIRKGFVPDK 121
+H +M G PD
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
R + +++ C G + A E L + G P V + A++++++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346
Query: 166 MIKQGSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFM 212
M ++ D TFN L++ C++G EL G DV T I KE +
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406
Query: 213 IDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
IDEA LL ++ G K S G++ DA S+M + PPN
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPN 460
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+ P T+ S I + G ++ +++F+ + +LYN++ +C
Sbjct: 526 GISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRA 585
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
F M+ G +P++ T+T+L+ S G +EAQE L EL +G
Sbjct: 586 IDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 57/230 (24%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY-------------- 102
P++ + FP ++ G I +A+EV ++ + C +Y
Sbjct: 109 PNAYTFFP-----VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---- 158
NS+ V M KG D +++NA C G + EA L++L+ G + S
Sbjct: 164 NSVRV-LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV 222
Query: 159 ------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGL 193
++++++M++ P++ TFN+LI +C++G E G
Sbjct: 223 LKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGC 282
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCF 243
D+ I + KE ++ A +L PS G + C+
Sbjct: 283 TPDIRMYATIIDGICKEGHLEVANEIL--------NRMPSYGLKPNVVCY 324
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 51/193 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + +I K GL++ A+E+ + M+ G PD +
Sbjct: 461 PVTFNTLINFLCKKGLVEQAIELLKQ----------------------MLVNGCSPDLIS 498
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
++ +++ +GK EA E L + +KG +P + + ++G V
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558
Query: 173 -----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
D +N++I ++CK E G + +T + I ++ E +
Sbjct: 559 DTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAK 618
Query: 215 EAFRLLCNLVEDG 227
EA LL L G
Sbjct: 619 EAQELLSELCSRG 631
>gi|399107192|gb|AFP20360.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMXLFKRME 186
>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Glycine max]
Length = 577
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 16/95 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+ MI+KGF P++ T+ ++++ +C G + EA++ +++ D+G+ S
Sbjct: 341 WFEMIKKGFQPNEYTYNVMMHGYCKIGDLAEARKIFEDMRDRGYAETTVSYGTMISGLCL 400
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A+ + +M ++G VPDL T+N LI+ +CK
Sbjct: 401 HGRTDEAQSLFEEMFQKGIVPDLITYNCLIKALCK 435
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 59/264 (22%)
Query: 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ ++ + P+ ++I F ++ AVEV ++ + + ++ L
Sbjct: 152 AVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCL 211
Query: 106 HVCFVRM------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ +R+ P+ R T L+ WC GK+ EA+E L ++ + G
Sbjct: 212 LDALCKNGSVKDASKVFEDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLE 271
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------- 190
P + A ++N M K+G P+ + LI+ +C++ +
Sbjct: 272 PDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMR 331
Query: 191 -------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--------- 234
G AD+ T I K MID+ + +L ++ + G + PS
Sbjct: 332 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKG--VMPSQVTYMQILVA 389
Query: 235 ----GQFDDAFCFFSEM-QIKTHP 253
QF++ +M QI HP
Sbjct: 390 HEKKEQFEECLELIEKMKQIGCHP 413
>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRM----------- 112
T S +I+ +GK G + A + +N+ + ++ YNSL +C +
Sbjct: 256 TFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVL 315
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ KGF P+ T+ L+N +C + ++ + + L +S G +
Sbjct: 316 VSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKF 375
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-------------LCADVNTNKIS 203
+A++++ +M+ G PD+ TFN L++ +C G++G + T I
Sbjct: 376 SAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNII 435
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I + K +++A+ L C+L G
Sbjct: 436 IKGLCKADKVEDAWYLFCSLALKG 459
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 51/187 (27%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRMIRKG 116
II+ + G ++ A++V + V+ YNSL M+R G
Sbjct: 190 IIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMG 249
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD T + L++ + G++ EA++ E+ + NP + + AK
Sbjct: 250 ISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAK 309
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+++N ++ +G P+ T+N+LI CK+ +D+ ++L
Sbjct: 310 KVLNVLVSKGFFPNAVTYNTLINGYCKAKR----------------------VDDGMKIL 347
Query: 221 CNLVEDG 227
C + DG
Sbjct: 348 CVMSRDG 354
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 35/172 (20%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------- 154
C +M++ GF P T LVN +C + EA + ++ G+ P
Sbjct: 136 CLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLC 195
Query: 155 ---PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA----DVNTNKISIPAV 207
V +A ++ M K G PD+ T+NSLI + SG G+ A D+ IS +
Sbjct: 196 EKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVI 255
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ +ID ++ GQ +A ++EM ++ PN Y
Sbjct: 256 TFSALID---------------VYGKEGQLLEAKKQYNEMIQRSVNPNIVTY 292
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G D + T L++ +C ++ A L ++ GF P + + A
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+V++++ G P++ +N++I+++C+ G++ DV
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDV 206
>gi|341605727|gb|AEK82966.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605729|gb|AEK82967.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + B+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
Length = 625
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 53/243 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I + G +D A +F+ V+ Y+S+ F RM++ G
Sbjct: 214 VINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNG 273
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
+PD +T LV+ +CSSGK +EA +++ G P V + A+
Sbjct: 274 VMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEAR 333
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
++ + ++K+G PD T+ +L+ G L G+ + + + A
Sbjct: 334 KIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAY 393
Query: 208 SKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNR 256
+K +DEA + N+ + G + + G+ DDA F+ ++ + PN
Sbjct: 394 AKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNI 453
Query: 257 PVY 259
V+
Sbjct: 454 VVF 456
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 94/261 (36%), Gaps = 76/261 (29%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK---------------- 89
+ M ++LM + + ++I+ + KH +D A+ VF+
Sbjct: 365 VEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTV 424
Query: 90 ----CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
CTA + +NSL +G P+ T L++ C+ K + +E
Sbjct: 425 LDILCTAGRVDDALSQFNSLK-------SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAF 477
Query: 146 ELSDKG-------FNP---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
E+ D+G FN V AK + + M++ G P+ T+N+LI+ C G
Sbjct: 478 EMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDG 537
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFD 238
++ DEA +LL +V +G K + G+ +
Sbjct: 538 KM----------------------DEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIE 575
Query: 239 DAFCFFSEMQIKTHPPNRPVY 259
D EM K P Y
Sbjct: 576 DGLTLLREMDGKGVNPGIVTY 596
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 115 KGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
KG P D +T ++N G++ +A + D+G +P V +
Sbjct: 201 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 260
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISI 204
A Q+ +M+K G +PD + SL+ C SG+ G+ DV T +
Sbjct: 261 KATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALM 320
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHK 229
+ K EA ++ +LV+ GHK
Sbjct: 321 DYLCKNGKSTEARKIFDSLVKRGHK 345
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-KGFNP-PVRSAKQM 162
+ + RM G PD ++TIL+ C ++A + L ++D KG P V + +
Sbjct: 155 MDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTV 214
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+N ++++G L+ SL + + G DV T I A+SK +D+A ++
Sbjct: 215 INGLLREGQ---LDKAYSLFDAMLDRGP---SPDVVTYSSIISALSKTQAMDKATQVFTR 268
Query: 223 LVEDG 227
+V++G
Sbjct: 269 MVKNG 273
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 107/260 (41%), Gaps = 47/260 (18%)
Query: 34 TLNRLNLTLISELSMWKTIELMKP-DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKC 90
T N L L SE + + ++LM+ + L + P T +++ F K G++ +A + +
Sbjct: 301 TYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360
Query: 91 TAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKM 137
T N + V++Y L + R M +KG P+ T+ L+ + SG
Sbjct: 361 TERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDW 420
Query: 138 REAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSL 181
R A L E+ +KG VR A +++++M + G P+ T+N++
Sbjct: 421 RSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI 480
Query: 182 IETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH--KLFPSLGQFDD 239
I+ C G + ++ T E R N+V K F +G+ D+
Sbjct: 481 IQGFCDKGNIKSAYEIRTRM-------------EKCRKRANVVTYNVFIKYFCQIGKMDE 527
Query: 240 AFCFFSEMQIKTHPPNRPVY 259
A +EM K PN Y
Sbjct: 528 ANDLLNEMLDKCLVPNGITY 547
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 43/226 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFV- 110
T + +I + G + A +V A+ V YNSL HV +
Sbjct: 193 TFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLL 252
Query: 111 -RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M+ G P T +L+N +C + A +E+ +G V + +++ + +
Sbjct: 253 KEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSE 312
Query: 170 GSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
G V P+ TF +++ CK G+ AD N I +++ +
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK---GMMADAND---WIDGMTERNV- 365
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E ++ ++ DG++ LG+ +DA M K PN Y
Sbjct: 366 -EPDVVIYTILIDGYR---RLGKMEDAMAVKEAMAKKGISPNVTTY 407
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 33 RTLNRLNLTLISELSMWK-TIELMK-PDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFN 88
+ LNR+ L+S + + +L K VFP T S +++ F +G I A +FN
Sbjct: 147 KHLNRILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFN 206
Query: 89 KCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSG 135
K + + Y L R M+ KGFVPD T+T L+N+ C
Sbjct: 207 KMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKK 266
Query: 136 KMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFN 179
K+REA + L + KG NP + A ++++ M G +P+L ++
Sbjct: 267 KLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYR 326
Query: 180 SLIETICKSGEL 191
+L+ +C G L
Sbjct: 327 TLVNGLCHLGML 338
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 46/196 (23%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------HVCFVRM 112
S + P S +I+ +G+ L D A+ F FN + N + H ++R
Sbjct: 106 SQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPLTKHLNRILDILVSHRNYLRP 165
Query: 113 I--------RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
+ G PD +++ IL+ A+C +G + A + N
Sbjct: 166 AFDLFKDAHKHGVFPDTKSYNILMRAFCLNGD-------------------ISIAYTLFN 206
Query: 165 KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEF 211
KM K+ VPD++++ L++ +C+ ++ G D T + ++ ++
Sbjct: 207 KMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKK 266
Query: 212 MIDEAFRLLCNLVEDG 227
+ EA++LLC + G
Sbjct: 267 KLREAYKLLCRMKVKG 282
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PDS T + ++ + + A ++ + C ++ YN++ + F R
Sbjct: 250 PDSF-----TYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAH 304
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M G +P+ ++ LVN C G + EA ++++E+ KGF+P +V
Sbjct: 305 DACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALV 364
Query: 164 NKMIKQGSVPD 174
G + +
Sbjct: 365 KGFCNVGRIEE 375
>gi|399107212|gb|AFP20370.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMALFKRME 186
>gi|260765969|gb|ACX50015.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765971|gb|ACX50016.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765973|gb|ACX50017.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765975|gb|ACX50018.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765977|gb|ACX50019.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765979|gb|ACX50020.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765981|gb|ACX50021.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765983|gb|ACX50022.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765985|gb|ACX50023.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765987|gb|ACX50024.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765989|gb|ACX50025.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765991|gb|ACX50026.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765993|gb|ACX50027.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765995|gb|ACX50028.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765997|gb|ACX50029.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765999|gb|ACX50030.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766001|gb|ACX50031.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766003|gb|ACX50032.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766005|gb|ACX50033.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766007|gb|ACX50034.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766009|gb|ACX50035.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766011|gb|ACX50036.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766013|gb|ACX50037.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766015|gb|ACX50038.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766017|gb|ACX50039.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766019|gb|ACX50040.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766021|gb|ACX50041.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766023|gb|ACX50042.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766025|gb|ACX50043.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766027|gb|ACX50044.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766029|gb|ACX50045.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766031|gb|ACX50046.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766033|gb|ACX50047.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766035|gb|ACX50048.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766037|gb|ACX50049.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766039|gb|ACX50050.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766041|gb|ACX50051.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766043|gb|ACX50052.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766047|gb|ACX50054.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766049|gb|ACX50055.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780310|gb|ACX50701.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780312|gb|ACX50702.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780318|gb|ACX50705.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780330|gb|ACX50711.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780332|gb|ACX50712.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780338|gb|ACX50715.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780340|gb|ACX50716.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780344|gb|ACX50718.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780346|gb|ACX50719.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780348|gb|ACX50720.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780394|gb|ACX50743.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780396|gb|ACX50744.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780398|gb|ACX50745.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780400|gb|ACX50746.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780402|gb|ACX50747.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780404|gb|ACX50748.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780406|gb|ACX50749.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780408|gb|ACX50750.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780410|gb|ACX50751.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780412|gb|ACX50752.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780414|gb|ACX50753.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780416|gb|ACX50754.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780418|gb|ACX50755.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780420|gb|ACX50756.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780422|gb|ACX50757.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780424|gb|ACX50758.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I + K G +D A+ +F N + + YN+L F + M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------RS--- 158
IRK +PD ++ ++N +CSSG + EA ++ +KG P + RS
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A + ++KMI G +PD ++N+LI+ K L GL ++ T +
Sbjct: 624 PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLI 683
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
+ E + EA ++L ++E G
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIG 707
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIR 114
+++I+ F ++G + +A+++ ++ A C V+ YN+ + F M+
Sbjct: 436 TILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G VPD T T L+ +C G M DK N + M++ PD
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNM-----------DKALN--------LFEAMVRTNLKPD 536
Query: 175 LETFNSLIETICKSGELG---------LCADVNTNKISIPAVSKEF----MIDEAFRLLC 221
T+N+LI+ CK+GE+G + D+ + IS V F ++ EA L
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCD 596
Query: 222 NLVEDG 227
++E G
Sbjct: 597 QMLEKG 602
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Query: 14 YFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKT--IELMKPDSLSVFPQTLSLII 71
Y A + + I ++D + + L L L + + T +E+ + D++ + I
Sbjct: 330 YNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQE----IF 385
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAW 131
+E + G++ + V F+ + L +H F M R G VPD +TIL++ +
Sbjct: 386 DEMSRRGVLPDLVS-FSSLIGVLARNGHLYQALMH--FREMERSGIVPDNVIYTILIDGF 442
Query: 132 CSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQGSVPDL 175
C +G + +A + E+ +G +N + A + N+M+++G VPD
Sbjct: 443 CRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDF 502
Query: 176 ETFNSLIETICKSGEL 191
TF +LI CK G +
Sbjct: 503 YTFTTLIRGYCKDGNM 518
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I + + GL++ A ++ N ++ + +L YN++ +C + M
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
++ G P+ T+ L+ C + EAQE E+S +G P + S ++
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+M + G VPD + LI+ C++G L G DV T
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIKTH 252
+ + K+ M +A L +VE G F +L G D A F M
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533
Query: 253 PPNRPVY 259
P++ Y
Sbjct: 534 KPDKVTY 540
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
KG D T+ L+NA+C G + EA + L S +G P + +
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICK 187
AK ++ +M++ G P+ T+N+L+ IC+
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLLVEICR 374
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 61/213 (28%)
Query: 106 HVCFVRMIRKGFVPDKRT-----------------HTILVNAWCSSGKMREAQEFLQELS 148
C +RM+RK V + + +LV + + K+RE E Q L
Sbjct: 155 QACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILR 214
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSVP----------------DLETFNSLIETICKSGEL- 191
KG + + + +++ +++ G V ++ T N ++ +CK +
Sbjct: 215 RKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFE 274
Query: 192 ------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----- 234
G+ AD+ T I A +E +++EAF+LL + G + P L
Sbjct: 275 NVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGME--PGLLTYNA 332
Query: 235 --------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G++D A EM PN Y
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 29/123 (23%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
+I + F + LID ++ N AF +L N + ++G + T+ ++
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAF------ILINEME-------KRGLQFNIITYNLI 683
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQGS 171
+N +C+ GKM+EA++ L+++ + G NP + ++N +M+++G
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGL 743
Query: 172 VPD 174
VPD
Sbjct: 744 VPD 746
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--FN--------------P 154
+MI G +PD ++ L++ + + +A + E+ +G FN
Sbjct: 632 KMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEG 691
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLI 182
++ A+Q++ KMI+ G PD T++SLI
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLI 719
>gi|341605713|gb|AEK82959.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605715|gb|AEK82960.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605717|gb|AEK82961.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605719|gb|AEK82962.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605755|gb|AEK82980.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605757|gb|AEK82981.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605759|gb|AEK82982.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605827|gb|AEK83016.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605829|gb|AEK83017.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 118/264 (44%), Gaps = 47/264 (17%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRL-NLTLISELSMWKTIELMKPDSLSVFPQTLSL-IIE 72
F +H + H L RL + L++ +S + +EL++ P+ ++L +I+
Sbjct: 36 FPGYSHTPYVFHH------ILKRLFDPKLVAHVS--RIVELIRTQKCKC-PEDVALTVIK 86
Query: 73 EFGKHGLIDNAVEVFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFV 118
+ K+ + D A+++F + F CQ + YNSL F+ G
Sbjct: 87 AYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLS 146
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LET 177
P+ +T+ IL+ C + +A+E L + ++GF+P V S ++N + K G + D L+
Sbjct: 147 PNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKL 206
Query: 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--- 234
F+ + E G+ DV I I K+ I A + L++ G ++P++
Sbjct: 207 FDEMPER-------GVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPNIPSY 258
Query: 235 ----------GQFDDAFCFFSEMQ 248
G+FD++F + M+
Sbjct: 259 NVMINGLCKCGKFDESFEIWHRMK 282
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFV 110
P + +I F + +++A+ F + C V+ YN+L +
Sbjct: 464 PHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVK 523
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR------------- 157
M+ KG+ P+ T+++L+N C K+ A + +KGF P V+
Sbjct: 524 EMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583
Query: 158 ---SAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A Q+ ++M ++ VP+L T N+L+E K
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYK 616
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/246 (19%), Positives = 94/246 (38%), Gaps = 43/246 (17%)
Query: 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
N + +S+W EL+ T +++ K+G ++ A+ + +
Sbjct: 372 NAKVDEAISIW---ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLD 428
Query: 99 VLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
Y+S+ R M + G P+ ++N + + K+ +A F
Sbjct: 429 TFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488
Query: 146 ELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ KG P V A +V +M+ +G P++ T++ L+ +C+
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
+L + + + A+ K F D N++ G S G+ +DA +SEM+
Sbjct: 549 KLDMALN-----LWCQALEKGFKPDVKMH---NIIIHG---LCSSGKVEDALQLYSEMKQ 597
Query: 250 KTHPPN 255
+ PN
Sbjct: 598 RKCVPN 603
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAF-----NCQQCVLLYNSLHVC---------FVRMI 113
+++I+ F K G I NA E++ + N ++ N L C + RM
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
+ D T++ L++ C SG + A +E+++ G +P V M+N ++ G +
Sbjct: 283 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 342
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+ ++E K G C V + I I + + +DEA +
Sbjct: 343 ECLELWKVME---KEG----CRTVVSYNILIRGLFENAKVDEAISI 381
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 62/258 (24%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD +S + +I F K G D A +++ V+ Y+S+ +
Sbjct: 194 PDVVSY-----TTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMD 248
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------- 156
M++ G +P+ T+ +++ +CSS + +EA FL+++ G P V
Sbjct: 249 KAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLM 308
Query: 157 -------RS--AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
RS A+++ + M K+G PD+ T+ +L++ G L G+
Sbjct: 309 DYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIH 368
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAF 241
D + I I A +K+ +DEA + + + H L P++ G DDA
Sbjct: 369 PDHHVFNILICAYAKQEKVDEAMLVFSKMRQ--HGLNPNVVTYGAVIGILCKSGSVDDAM 426
Query: 242 CFFSEMQIKTHPPNRPVY 259
+F +M + PN VY
Sbjct: 427 LYFEQMIDEGLTPNIIVY 444
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + +++I + K +D A+ VF+K V+ Y ++
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAV 412
Query: 106 -------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG- 151
+ F +MI +G P+ +T L+++ C K +A+E + E+ D+G
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472
Query: 152 ------FNPPVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
FN + S ++++ + M++ G P++ T+++LI+ C +G++
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM----- 527
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
DEA +LL ++ G K + + + DDA F
Sbjct: 528 -----------------DEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFK 570
Query: 246 EMQIKTHPPNRPVY 259
EM PN Y
Sbjct: 571 EMVSSGVSPNIITY 584
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G P+ T++ L++ +C +GKM EA + L + G P + ++N
Sbjct: 499 FDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCR 558
Query: 165 ------------KMIKQGSVPDLETFNSLIETI------CKSGEL-------GLCADVNT 199
+M+ G P++ T+N +++ + + EL G +++T
Sbjct: 559 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELST 618
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + DEA R+ NL
Sbjct: 619 YNIILHGLCKNNLTDEALRMFQNL 642
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 29/161 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-----QCVLLYN------ 103
M+ D + T + +++ K+G A ++F+ T + C LL
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351
Query: 104 --SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+H M+R G PD IL+ A+ K+ EA ++ G NP V +
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETIC 186
++ + K GSV P++ + SLI ++C
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLC 452
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK---GFNPPVRSA 159
+++ + RM +PD + TIL+ C + +EA E L ++D G P V S
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSY 199
Query: 160 KQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
++N K+G S T++ +++ + DV T I A+ K +D+A
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDR-------RISPDVVTYSSIIAALCKGQAMDKAME 252
Query: 219 LLCNLVEDG 227
+L +V++G
Sbjct: 253 VLTTMVKNG 261
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 53/243 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I + G +D A +F+ V+ Y+S+ F RM++ G
Sbjct: 213 VINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNG 272
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
+PD +T LV+ +CSSGK +EA +++ G P V + A+
Sbjct: 273 VMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEAR 332
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
++ + ++K+G PD T+ +L+ G L G+ + + + A
Sbjct: 333 KIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAY 392
Query: 208 SKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNR 256
+K +DEA + N+ + G + + G+ DDA F+ ++ + PN
Sbjct: 393 AKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNI 452
Query: 257 PVY 259
V+
Sbjct: 453 VVF 455
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 94/261 (36%), Gaps = 76/261 (29%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK---------------- 89
+ M ++LM + + ++I+ + KH +D A+ VF+
Sbjct: 364 VEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTV 423
Query: 90 ----CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
CTA + +NSL +G P+ T L++ C+ K + +E
Sbjct: 424 LDILCTAGRVDDALSQFNSLK-------SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAF 476
Query: 146 ELSDKG-------FNP---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
E+ D+G FN V AK + + M++ G P+ T+N+LI+ C G
Sbjct: 477 EMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDG 536
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFD 238
++ DEA +LL +V +G K + G+ +
Sbjct: 537 KM----------------------DEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIE 574
Query: 239 DAFCFFSEMQIKTHPPNRPVY 259
D EM K P Y
Sbjct: 575 DGLTLLREMDGKGVNPGIVTY 595
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 115 KGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
KG P D +T ++N G++ +A + D+G +P V +
Sbjct: 200 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 259
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISI 204
A Q+ +M+K G +PD + SL+ C SG+ G+ DV T +
Sbjct: 260 KATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALM 319
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHK 229
+ K EA ++ +LV+ GHK
Sbjct: 320 DYLCKNGKSTEARKIFDSLVKRGHK 344
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-KGFNP-PVRSAK 160
+++ + RM G PD ++TIL+ C ++A + L ++D KG P V +
Sbjct: 152 DAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYT 211
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++N ++++G L+ SL + + G DV T I A+SK +D+A ++
Sbjct: 212 TVINGLLREGQ---LDKAYSLFDAMLDRGP---SPDVVTYSSIISALSKTQAMDKATQVF 265
Query: 221 CNLVEDG 227
+V++G
Sbjct: 266 TRMVKNG 272
>gi|341605721|gb|AEK82963.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605821|gb|AEK83013.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GLAINSMFYSSLIXGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 51/270 (18%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGL 79
NI+ H+I L+ S+ K ++L + S P T +I K G
Sbjct: 857 NIITHNIIIS--------ALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGR 908
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLH-----------VC--FVRMIRKGFVPDKRTHTI 126
+ A+++F + + C+ +YN L C F RMI++G PD +++TI
Sbjct: 909 SEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTI 968
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK----------------QG 170
LV +G++ +A + +EL G +P S M+N + K +G
Sbjct: 969 LVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRG 1028
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
P+L T+N+LI +G + + +FM E N + GH
Sbjct: 1029 ISPELYTYNALILHFGNAGMVDQAGKMFE--------ELQFMGLEPNVFTYNALIRGHS- 1079
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G D AF F +M I PN +A
Sbjct: 1080 --KSGNKDRAFSVFKKMMIVGCSPNAGTFA 1107
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 53/197 (26%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
++L + P T ++ I G+ G ID+A + M +
Sbjct: 254 ETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKT----------------------MEDE 291
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G PD T+T+L++A C++GK+ +A+E ++ P + +
Sbjct: 292 GCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETV 351
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
K+ ++M G PD+ T+ L+E +CKSG++ G+ +++T I
Sbjct: 352 KRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISG 411
Query: 207 VSKEFMIDEAFRLLCNL 223
+ +DEA L N+
Sbjct: 412 LLNLRRLDEALELFNNM 428
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 54/235 (22%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTIELMKP-DSLSVFPQTLS--LIIEEFGKHGLID 81
VR + T N L L++ + + +EL +SL V P S L I+ +GK G +
Sbjct: 395 VRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPE 454
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
A++ F K M ++G +P + + G++REA+
Sbjct: 455 KALDTFEK----------------------MKKRGIMPSIAACNASLYSLAEMGRIREAK 492
Query: 142 EFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
+ ++ + G +P + A +++ +M+ +G PD+ NSLI+T+
Sbjct: 493 DIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTL 552
Query: 186 CKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
K+G +L L V T I I + KE + +A L ++ E G
Sbjct: 553 YKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG 607
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 56/247 (22%)
Query: 28 DIYAERTLNR---LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI---- 80
D+ ++ +NR LT+ LS+ I P +L Q ++ + +GLI
Sbjct: 146 DLMQKQVINRNPNTYLTIFKALSIKGGIR-QAPFALGKMRQA-GFVLNAYSYNGLIYFLL 203
Query: 81 -----DNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKR 122
A++V+ + + + + Y++L V R M G P+
Sbjct: 204 QPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIY 263
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T+TI + +G++ +A L+ + D+G P V + AK++ KM
Sbjct: 264 TYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKM 323
Query: 167 IKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMI 213
PDL T+ +L+ G+L G DV T I + A+ K +
Sbjct: 324 RASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKV 383
Query: 214 DEAFRLL 220
D+AF +L
Sbjct: 384 DQAFDML 390
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 105/240 (43%), Gaps = 32/240 (13%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN----KCTAFNCQQCV 99
S LS +K + + P+ + P+T + ++E HG +++ VF+ + N +
Sbjct: 104 SALSYFKMVSQL-PNIVHT-PETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYL 161
Query: 100 LLYNSLHV---------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
++ +L + +M + GFV + ++ L+ G +EA + + + +
Sbjct: 162 TIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISE 221
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
G P +++ + M+ G D T L+E + LGL ++ T I I + +
Sbjct: 222 GLKPSMKTYSAL---MVALGRRRDTGTIMDLLEEM---ETLGLRPNIYTYTICIRVLGRA 275
Query: 211 FMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
ID+A+ +L + ++G L +L G+ D A +++M+ +H P+ Y
Sbjct: 276 GRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTY 335
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 46/211 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+ PDS+ T +++++ + K G ID A ++ + + C+ +++ NSL
Sbjct: 503 LSPDSV-----TYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGR 557
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
F R+ P T+ IL+ GK+ +A + + + G P
Sbjct: 558 VDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNA 617
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG------------L 193
V A +M +M PD+ T+N++I + K G G L
Sbjct: 618 LLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFL 677
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
D T +P V K+ +++A +++ V
Sbjct: 678 SPDHVTLYTLLPGVVKDGRVEDAIKIVMEFV 708
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 45/208 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +L+++ GK ID E++N+ M+ +G P+ TH
Sbjct: 825 TYNLLLDAHGKSKRIDELFELYNE----------------------MLCRGCKPNIITHN 862
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG-SVPDLETFNSLIET 184
I+++A S + +A + E+ F+P + ++ ++K G S ++ F + +
Sbjct: 863 IIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDY 922
Query: 185 ICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------- 234
CK CA N I I K ++ A L ++++G + P L
Sbjct: 923 QCKPN----CAIYN---ILINGFGKAGNVNIACDLFKRMIKEGIR--PDLKSYTILVECL 973
Query: 235 ---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ DDA +F E+++ P+ Y
Sbjct: 974 FMTGRVDDAVHYFEELKLTGLDPDTVSY 1001
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ F ++GL+D +E+ + M+ G +PD T+T
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQ----------------------MLSHGCMPDVITYT 395
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++N +C G + EA L+ +S G P S A++++++MI+Q
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455
Query: 170 GSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+ TFN+LI +CK G EL G D+ + I + K +EA
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515
Query: 217 FRLLCNLVEDG 227
LL +V G
Sbjct: 516 LELLNVMVNKG 526
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 103/294 (35%), Gaps = 88/294 (29%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS----- 104
+ +E M ++ +L++ + G +D AV + K F C+ ++ YN+
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226
Query: 105 -------------------------------------------LHVCFVRMIRKGFVPDK 121
+H +M G PD
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
R + +++ C G + A E L + G P V + A++++++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346
Query: 166 MIKQGSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFM 212
M ++ D TFN L++ C++G EL G DV T I KE +
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406
Query: 213 IDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
IDEA LL ++ G K S G++ DA S+M + PPN
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPN 460
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+ P T+ S I + G ++ +++F+ + +LYN++ +C
Sbjct: 526 GISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRA 585
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
F M+ G +P++ T+T+L+ S G +EAQE L EL +G
Sbjct: 586 IDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 57/230 (24%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY-------------- 102
P++ + FP ++ G I +A+EV ++ + C +Y
Sbjct: 109 PNAYTFFP-----VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---- 158
NS+ V M KG D +++NA C G + EA L++L+ G + S
Sbjct: 164 NSVRV-LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV 222
Query: 159 ------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGL 193
++++++M++ P++ TFN+LI +C++G E G
Sbjct: 223 LKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGC 282
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCF 243
D+ I + KE ++ A +L PS G + C+
Sbjct: 283 TPDIRMYATIIDGICKEGHLEVANEIL--------NRMPSYGLKPNVVCY 324
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 51/193 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + +I K GL++ A+E+ + M+ G PD +
Sbjct: 461 PVTFNTLINFLCKKGLVEQAIELLKQ----------------------MLVNGCSPDLIS 498
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
++ +++ +GK EA E L + +KG +P + + ++G V
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558
Query: 173 -----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
D +N++I ++CK E G + +T + I ++ E +
Sbjct: 559 DTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAK 618
Query: 215 EAFRLLCNLVEDG 227
EA LL L G
Sbjct: 619 EAQELLSELCSRG 631
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ F ++GL+D +E+ + M+ G +PD T+T
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQ----------------------MLSHGCMPDVITYT 395
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++N +C G + EA L+ +S G P S A++++++MI+Q
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455
Query: 170 GSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+ TFN+LI +CK G EL G D+ + I + K +EA
Sbjct: 456 GCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 515
Query: 217 FRLLCNLVEDG 227
LL +V G
Sbjct: 516 LELLNVMVNKG 526
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 103/294 (35%), Gaps = 88/294 (29%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS----- 104
+ +E M ++ +L++ + G +D AV + K F C+ ++ YN+
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226
Query: 105 -------------------------------------------LHVCFVRMIRKGFVPDK 121
+H +M G PD
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
R + +++ C G + A E L + G P V + A++++++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346
Query: 166 MIKQGSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFM 212
M ++ D TFN L++ C++G EL G DV T I KE +
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406
Query: 213 IDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
IDEA LL ++ G K S G++ DA S+M + PPN
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPN 460
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 61 SVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+ P T+ S I + G ++ +++F+ + +LYN++ +C
Sbjct: 526 GISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRA 585
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
F M+ G +P++ T+T+L+ S G +EAQE L EL +G
Sbjct: 586 IDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 57/230 (24%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY-------------- 102
P++ + FP ++ G I +A+EV ++ + C +Y
Sbjct: 109 PNAYTFFP-----VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---- 158
NS+ V M KG D +++NA C G + EA L++L+ G + S
Sbjct: 164 NSVRV-LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV 222
Query: 159 ------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGL 193
++++++M++ P++ TFN+LI +C++G E G
Sbjct: 223 LKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGC 282
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCF 243
D+ I + KE ++ A +L PS G + C+
Sbjct: 283 TPDIRMYATIIDGICKEGHLEVANEIL--------NRMPSYGLKPNVVCY 324
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 51/193 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + +I K GL++ A+E+ + M+ G PD +
Sbjct: 461 PVTFNTLINFLCKKGLVEQAIELLKQ----------------------MLVNGCSPDLIS 498
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
++ +++ +GK EA E L + +KG +P + + ++G V
Sbjct: 499 YSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558
Query: 173 -----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
D +N++I ++CK E G + +T + I ++ E +
Sbjct: 559 DTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAK 618
Query: 215 EAFRLLCNLVEDG 227
EA LL L G
Sbjct: 619 EAQELLSELCSRG 631
>gi|145358679|ref|NP_198856.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171831|sp|Q9FND8.1|PP409_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g40400
gi|10178151|dbj|BAB11596.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|110742507|dbj|BAE99171.1| hypothetical protein [Arabidopsis thaliana]
gi|332007160|gb|AED94543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 610
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 44/211 (20%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN----------SLHVC---FV 110
P ++++ + K GL++ VF + V+ N + C +
Sbjct: 166 PVVFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYS 225
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M R G P+ T IL N +C+ RE +FL+++ ++GF P + + +V+ ++G
Sbjct: 226 VMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRG 285
Query: 171 S----------------VPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
VPDL T+ SLI+ +CK G + G+ D +
Sbjct: 286 RLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYN 345
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
I A KE M+ ++ +LL ++ G+ + P
Sbjct: 346 TLIYAYCKEGMMQQSKKLLHEML--GNSVVP 374
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
H F RM+ +G PD ++ L+ A+C G M+++++ L E+ P + K +V
Sbjct: 326 HQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEG 385
Query: 166 MIKQGSVPDLETFNSLIE 183
+++G + L N ++E
Sbjct: 386 FVREGRL--LSAVNFVVE 401
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFG---KHGLIDNAVEVFNKCT 91
L RL + + E+ + + L + L IIEE G K +N +E ++C
Sbjct: 402 LRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCD 461
Query: 92 AFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
A ++ ++L L + V D +T+ L+ C G+ REA+ + E+ D
Sbjct: 462 AI--EEALVLKGKLK-------NQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSE 512
Query: 152 FNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
P A+++++ + + D E++NSL++ +C++G
Sbjct: 513 VKPDSFICGALVYGYCKELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCETG 566
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 41/239 (17%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K +E M+ L+ P TL+ ++ F K G++ A + + V+ YN+L +
Sbjct: 317 KLVEEMEELGLATLP-TLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGY 375
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
R M KG PD +T+ L+ + +S R L E+ + G
Sbjct: 376 QRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADL 435
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
VR A +++++M++ G P T+N++I C+ G+ D+
Sbjct: 436 VTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIR-- 493
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ E A + CN+ K F +G+ D+A +EM K PNR Y
Sbjct: 494 ------IRMEKCKKRANVVTCNVF---LKYFCKMGKMDEANVVLNEMLEKGLVPNRITY 543
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 32/156 (20%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------RSAKQ--- 161
PDK T I+++ C +G++R+A + +++ G P V R+ K
Sbjct: 186 PDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHV 245
Query: 162 --MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
++ +M + G P++ TFN LI CK + G+ A++ T +
Sbjct: 246 DMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSG 305
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
+ +E ++++ +L+ + E G P+L + FC
Sbjct: 306 LCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGFC 341
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 47/206 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR--- 122
T +++I + K I A++VF + ++ Y SL + R+G V D
Sbjct: 263 TFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSL---VSGLCREGKVEDSMKLV 319
Query: 123 ------------THTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
T ++N +C G M EA+ ++ ++ KG P V
Sbjct: 320 EEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLG 379
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNTNK 201
+ A M +G PD++T+N LI S E G+ AD+ T
Sbjct: 380 KMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYN 439
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I A+ + + +A +LL +VE G
Sbjct: 440 VLIGALCCKGEVRKAVKLLDEMVEVG 465
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 31/155 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFV- 110
T +++I K G + A +V + V+ YN+L HV +
Sbjct: 190 TFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLL 249
Query: 111 -RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M + G P+ T +L+N +C + A + +E+ G + + +V+ + ++
Sbjct: 250 KEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCRE 309
Query: 170 GSVPD---------------LETFNSLIETICKSG 189
G V D L T NS++ CK G
Sbjct: 310 GKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKG 344
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 50/192 (26%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELS----------DKGFNP-------------- 154
P+ T+ I+V+ C G+ EA++ +E+ D+G P
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCK 272
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
V AK+++ MI+ G VPDL T+NSLIE C G+L G DV +
Sbjct: 273 EGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVIS 332
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQ 248
+ I SK ++EA +L ++ G + + SL G+ DDA FS M+
Sbjct: 333 YNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMK 392
Query: 249 IKTHPPNRPVYA 260
N Y
Sbjct: 393 AHGIAENSYTYG 404
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
Y+ + + +M G D+ T IL+N C+ ++RE + +G++P
Sbjct: 85 YSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNT 144
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
+ A ++ +M K G PD+ T+ +LI+ +C +G + + ++ ++
Sbjct: 145 LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLN-- 202
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+S+ + + + N++ DG +G+ D+A F EM+ + PN
Sbjct: 203 DISRYEINCKPNVITYNIIVDG---LCKVGREDEAKQLFEEMKTQGMIPN 249
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 17/169 (10%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
NS FV M KG PD ++ +L+N + + K+ EA + E+ G P V + +
Sbjct: 312 NSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 371
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+ + G V D + S+++ G+ + T I + + K + EA +L
Sbjct: 372 LKGIFLAGKVDDAKKLFSVMKA------HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTE 425
Query: 223 LVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
L KL G+ + A+ F ++ + H PN Y
Sbjct: 426 LKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYT 474
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQG 170
L++ C +GK+ A E ++LS++G P V A ++ KM G
Sbjct: 441 LIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG 500
Query: 171 SVPDLETFNSLIETICKSGEL 191
PD+ T+N+L+ +S +L
Sbjct: 501 CTPDIITYNTLMRGFYESNKL 521
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 24/211 (11%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+W +E M+ S + T +I+ + + + AVE F K ++F + + YN L
Sbjct: 173 VWSLVEAMRCRS-CLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLID 231
Query: 106 -----------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H F M RKG F+PD +T+T+L+ W + + QE+ D G
Sbjct: 232 ILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIK 291
Query: 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
P V + +++ K G + ++ F+ + E+ C C +N +
Sbjct: 292 PDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLIN-------GLGSMER 344
Query: 213 IDEAFRLLCNLVEDGHKL-FPSLGQFDDAFC 242
+DEA + E G + P+ A+C
Sbjct: 345 LDEALKYFQLSKESGFPMEVPTCNAVIGAYC 375
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 13/153 (8%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K ++ M+ + +T +I+ K I+ A +F + C+ + Y +
Sbjct: 384 FKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGM 443
Query: 109 FV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F +M KG +P + L+N C ++ EA + QE+ DKG PP
Sbjct: 444 FCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPP 503
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+ + +++ G + + +E + ++
Sbjct: 504 GQLFSNLKEALVEGGRITLAQEVTQRLEMLRRT 536
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 38/228 (16%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+KPD ++ ++I F K G D A++VF++ C +Y L M R
Sbjct: 290 IKPDVVAY-----GMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMER 344
Query: 115 -------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
GF + T ++ A+C + + A + + E+ G P R+
Sbjct: 345 LDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDI 404
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC-ADVNTNKISIPAVSKEFMIDEAFRLL 220
++N +IK + E +N L + + + G C ++NT + + +D A ++
Sbjct: 405 ILNHLIKSEKIE--EAYN-LFQRMERDG----CEPELNTYTMMVGMFCSNERVDMALKVW 457
Query: 221 CNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIK-THPPNR 256
+ E G +F +L + ++A +F EM K PP +
Sbjct: 458 KQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQ 505
>gi|296088922|emb|CBI38482.3| unnamed protein product [Vitis vinifera]
Length = 368
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 32/132 (24%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ KG P+ + IL+N C +G ++ A EFL++ MI
Sbjct: 233 FEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD-------------------MIH 273
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G PD+ T+NSLI +CK+G G+C D T I KE M D+
Sbjct: 274 RGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDD 333
Query: 216 AFRLLCNLVEDG 227
A LL V+ G
Sbjct: 334 AHLLLSRGVDSG 345
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 108/278 (38%), Gaps = 62/278 (22%)
Query: 41 TLISELSMWKTIELMKPDSLSVFPQTLS------------LIIEEFGKHGLIDNAVEVFN 88
T + +S W I M+ D+ VF + L+ +I + G +D A++
Sbjct: 185 TYATLISGWCKIGRME-DAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYRE 243
Query: 89 KCTAFNCQQCVLLYNSL-HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSG 135
V YN L H F+ M R G PD T+ IL+N +C G
Sbjct: 244 DMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEG 303
Query: 136 KMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFN 179
++A E +E+S KG V+ ++ +K+G PD+ +N
Sbjct: 304 NEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYN 363
Query: 180 SLIETICKSGEL----GLCADVNTNKISIPAVSKEFMI---------DEAFRLLCNLVED 226
+LI + C G++ + A++ +I V+ +I DEA L+ + +
Sbjct: 364 ALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKR 423
Query: 227 GHKLFPSL-----GQFDDAFCFFSEMQIKTHPPNRPVY 259
G + P L GQ DDA EM K P+ Y
Sbjct: 424 G--IQPDLGLCKNGQGDDAENLMKEMVGKGITPDDSTY 459
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HVC----------FVRM 112
T + +I F + G + +F + V++YN+L H M
Sbjct: 326 TYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEM 385
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR--------SAKQMVN 164
+K PD T+ L+ +C G++ EA+ + E++ +G P + A+ ++
Sbjct: 386 EKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLGLCKNGQGDDAENLMK 445
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+M+ +G PD T+ SLIE + E AD
Sbjct: 446 EMVGKGITPDDSTYISLIEGLTTVDEQMSAADA 478
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 31/143 (21%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV- 172
R G PDK T+ L++ WC G+M +A + E M+ QG V
Sbjct: 176 RGGIAPDKYTYATLISGWCKIGRMEDAAKVFDE-------------------MLTQGEVA 216
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
P +N+LI C G+L + + + M + LL H LF
Sbjct: 217 PSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVA----MTVATYNLLV------HALFM 266
Query: 233 SLGQFDDAFCFFSEMQIKTHPPN 255
G+ DA+ EMQ P+
Sbjct: 267 D-GRASDAYAVLEEMQRNGLSPD 288
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 30/139 (21%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
P+ T++IL++ C +G++ EA + QE+ +KG P R+ A +M
Sbjct: 197 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 256
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+++M + VP++ T+ LI+ +C+ G++ GLC + T I K
Sbjct: 257 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK 316
Query: 210 EFMIDEAFRLLCNLVEDGH 228
E + AF+LL +++E G+
Sbjct: 317 EGWVVSAFQLL-SVMEKGN 334
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 40/166 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ KG P RT+T+L+ A C G +A + L E++ K P V +
Sbjct: 225 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGK 284
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSG------------ELGLCA-DVNT-NK 201
A + KM+K G P + TFN+LI CK G E G C ++ T N+
Sbjct: 285 IEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNE 344
Query: 202 I--SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
+ + VSK + +AF LL +V++G L P ++ D FC
Sbjct: 345 LMEGLCRVSKSY---KAFLLLRRVVDNG--LLPDRVTYNILVDGFC 385
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 44/211 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RM 112
T + +I + K G + +A ++ + NC+ + YN L +C V R+
Sbjct: 306 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 365
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ G +PD+ T+ ILV+ +C G++ A ++ G P +
Sbjct: 366 VDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRL 425
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-GLC------------ADVNTNKIS 203
A ++ M+K+G D TF +LI+ CK G+ +C +T
Sbjct: 426 EQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCF 485
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
+ A+ K++ ++EA +L +++ G L PS+
Sbjct: 486 LDALGKDYKLNEANAMLGKMMKYG--LVPSV 514
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 79 LIDNAVEVFNKCTA----FNCQQCVL----LYNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
L +N VE N+C FNC L N + +M++ G VP THTIL+
Sbjct: 466 LFENMVE--NRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 523
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
C +G+ + + L+ + G +P V + ++N + G V + ET +
Sbjct: 524 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI------LFSMSS 577
Query: 191 LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G+ + T + + A K +D AF+++ +V++G
Sbjct: 578 FGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 614
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
+T +++I+ G+ D A+++ ++ C V Y L +C F +
Sbjct: 235 RTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRK 294
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ---------- 161
M++ G P T L+N +C G + A + L + P +R+ +
Sbjct: 295 MLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSK 354
Query: 162 ------MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
++ +++ G +PD T+N L++ CK G+L + ++
Sbjct: 355 SYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNI 396
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 54/181 (29%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
+ RM+ +GFV + +VNA C +G ++ A+ F ++ GF +V
Sbjct: 116 YRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCR 175
Query: 164 -----------NKMIKQGSV-PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
KM K+ S P+ T++ LI +C++G L
Sbjct: 176 RDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRL-------------------- 215
Query: 212 MIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPNRPV 258
+EAF+L +VE G + PS +G D A EM K PN
Sbjct: 216 --EEAFQLKQEMVEKGCQ--PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHT 271
Query: 259 Y 259
Y
Sbjct: 272 Y 272
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 90/241 (37%), Gaps = 40/241 (16%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+W +E M+ L + T LI+ + + + AVE F K ++F + + YN L
Sbjct: 180 VWSLVEAMRCRGL-LSKDTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLID 238
Query: 106 -----------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H F M R G FVPD +T+T+L+ W + + QE+ D G
Sbjct: 239 VLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIK 298
Query: 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
P V + +++ K G + ++ F + C C +N + E
Sbjct: 299 PDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLIN-------GLGSEER 351
Query: 213 IDEAFRLL--------------CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
+DEA + CN V + +F AF EM+ PN
Sbjct: 352 LDEALKYFELSKASGFPMEVPTCNAVVGA---YCRSSKFQHAFKMVDEMRKTGIGPNART 408
Query: 259 Y 259
Y
Sbjct: 409 Y 409
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 13/153 (8%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K ++ M+ + +T +I++ K I+ A VF + C+ + Y +
Sbjct: 391 FKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGM 450
Query: 109 FV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F +M KG +P + L+N C ++ EA + QE+ DKG PP
Sbjct: 451 FCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPP 510
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+ + +I+ G + + ++T+ K+
Sbjct: 511 GQLFSNLKEALIEGGRISLAQDMALKLDTLRKT 543
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 36/227 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC----VLLYNSLHV--- 107
+KPD ++ +I F K G D A++VF + A C +L N L
Sbjct: 297 IKPDVVAY-----GTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEER 351
Query: 108 ------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F GF + T +V A+C S K + A + + E+ G P R+
Sbjct: 352 LDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDI 411
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++ +IK + E +N + G G +NT + + +D A ++
Sbjct: 412 ILQYLIKSQKIE--EAYN----VFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWK 465
Query: 222 NLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIK-THPPNR 256
+ E G +F SL + ++A +F EM K PP +
Sbjct: 466 QMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRPPGQ 512
>gi|341605765|gb|AEK82985.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605767|gb|AEK82986.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605769|gb|AEK82987.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605771|gb|AEK82988.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSIFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 118/264 (44%), Gaps = 47/264 (17%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRL-NLTLISELSMWKTIELMKPDSLSVFPQTLSL-IIE 72
F +H + H L RL + L++ +S + +EL++ P+ ++L +I+
Sbjct: 36 FPGYSHTPYVFHH------ILKRLFDPKLVAHVS--RIVELIRTQKCKC-PEDVALTVIK 86
Query: 73 EFGKHGLIDNAVEVFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFV 118
+ K+ + D A+++F + F CQ + YNSL F+ G
Sbjct: 87 AYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLS 146
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LET 177
P+ +T+ IL+ C + +A+E L + ++GF+P V S ++N + K G + D L+
Sbjct: 147 PNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKL 206
Query: 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--- 234
F+ + E G+ DV I I K+ I A + L++ G ++P++
Sbjct: 207 FDEMPER-------GVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPNIPSY 258
Query: 235 ----------GQFDDAFCFFSEMQ 248
G+FD++F + M+
Sbjct: 259 NVMINGLCKCGKFDESFEIWHRMK 282
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFV 110
P + +I F + +++A+ F + C V+ YN+L +
Sbjct: 464 PHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVK 523
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR------------- 157
M+ KG+ P+ T+++L+N C K+ A + +KGF P V+
Sbjct: 524 EMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583
Query: 158 ---SAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A Q+ ++M ++ VP+L T N+L+E K
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYK 616
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 43/246 (17%)
Query: 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
N + +S+W EL+ T +++ K+G ++ A+ + +
Sbjct: 372 NAKVDEAISIW---ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLD 428
Query: 99 VLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
Y+S+ R M + G P+ ++N + + K+ +A F
Sbjct: 429 TFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488
Query: 146 ELSDKGFNPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSG 189
+ KG P V + ++N +M+ +G P++ T++ L+ +C+
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
+L + + + A+ K F D N++ G S G+ +DA +SEM+
Sbjct: 549 KLDMALN-----LWCQALEKGFKPDVKMH---NIIIHG---LCSSGKVEDALQLYSEMKQ 597
Query: 250 KTHPPN 255
+ PN
Sbjct: 598 RKCVPN 603
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAF-----NCQQCVLLYNSLHVC---------FVRMI 113
+++I+ F K G I NA E++ + N ++ N L C + RM
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
+ D T++ L++ C SG + A +E+++ G +P V M+N ++ G +
Sbjct: 283 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 342
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+ ++E K G C V + I I + + +DEA +
Sbjct: 343 ECLELWKVME---KEG----CRTVVSYNILIRGLFENAKVDEAISI 381
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I + K G +D A+ +F N + + YN+L F + M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------RS--- 158
IRK +PD ++ ++N +CSSG + EA ++ +KG P + RS
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A + ++KMI G +PD ++N+LI+ K L GL ++ T +
Sbjct: 624 PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLI 683
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
+ E + EA ++L ++E G
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIG 707
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIR 114
+++I+ F ++G + +A+++ ++ A C V+ YN+ + F M+
Sbjct: 436 TILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G VPD T T L+ +C G M DK N + M++ PD
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNM-----------DKALN--------LFEAMVRTNLKPD 536
Query: 175 LETFNSLIETICKSGELG---------LCADVNTNKISIPAVSKEF----MIDEAFRLLC 221
T+N+LI+ CK+GE+G + D+ + IS V F ++ EA L
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCD 596
Query: 222 NLVEDG 227
++E G
Sbjct: 597 QMLEKG 602
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Query: 14 YFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKT--IELMKPDSLSVFPQTLSLII 71
Y A + + I ++D + + L L L + + T +E+ + D++ + I
Sbjct: 330 YNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQE----IF 385
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAW 131
+E + G++ + V F+ + L +H F M R G VPD +TIL++ +
Sbjct: 386 DEMSRRGVLPDLVS-FSSLIGVLARNGHLYQALMH--FREMERSGIVPDNVIYTILIDGF 442
Query: 132 CSSGKMREAQEFLQELSDKG-------FNPPVRS---------AKQMVNKMIKQGSVPDL 175
C +G + +A + E+ +G +N + A + N+M+++G VPD
Sbjct: 443 CRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDF 502
Query: 176 ETFNSLIETICKSGEL 191
TF +LI CK G +
Sbjct: 503 YTFTTLIRGYCKDGNM 518
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I + + GL++ A ++ N ++ + +L YN++ +C + M
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
++ G P+ T+ L+ C + EAQE E+S +G P + S ++
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+M + G VPD + LI+ C++G L G DV T
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIKTH 252
+ + K+ M +A L +VE G F +L G D A F M
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533
Query: 253 PPNRPVY 259
P++ Y
Sbjct: 534 KPDKVTY 540
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
KG D T+ L+NA+C G + EA + L S +G P + +
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICK 187
AK ++ +M++ G P+ T+N+L+ IC+
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLLVEICR 374
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 61/213 (28%)
Query: 106 HVCFVRMIRKGFVPDKRT-----------------HTILVNAWCSSGKMREAQEFLQELS 148
C +RM+RK V + + +LV + + K+RE E Q L
Sbjct: 155 QACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILR 214
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSVP----------------DLETFNSLIETICKSGEL- 191
KG + + + +++ +++ G V ++ T N ++ +CK +
Sbjct: 215 RKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFE 274
Query: 192 ------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----- 234
G+ AD+ T I A +E +++EAF+LL + G + P L
Sbjct: 275 NVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGME--PGLLTYNA 332
Query: 235 --------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G++D A EM PN Y
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 16/79 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
M ++G + T+ +++N +C+ GKM+EA++ L+++ + G NP + ++N
Sbjct: 668 MEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDN 727
Query: 165 ---------KMIKQGSVPD 174
+M+++G VPD
Sbjct: 728 MKEAFRFHDEMLQRGLVPD 746
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--FN--------------P 154
+MI G +PD ++ L++ + + +A + E+ +G FN
Sbjct: 632 KMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEG 691
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLI 182
++ A+Q++ KMI+ G PD T++SLI
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLI 719
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMI---------- 113
T+ ++ F + + +AV + +K + ++ YN++ +C R +
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEI 216
Query: 114 -RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
RKG P+ T+T LVN C+SG+ +A L+++ + P V + +++ +K G V
Sbjct: 217 GRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKV 276
Query: 173 ----------------PDLETFNSLIETIC---KSGELGLCADVNTNKISIPAVSKEFMI 213
PD+ T++SLI +C + E D+ +K P V +
Sbjct: 277 LEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTL 336
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQ 236
F VEDG KLF + Q
Sbjct: 337 INGF-CKAKRVEDGMKLFRKMSQ 358
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 91/206 (44%), Gaps = 42/206 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S +++ F K+G + A E+F + + ++ Y+SL +C F M
Sbjct: 262 TYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
+ KG PD ++ L+N +C + ++ + + +++S +G +N ++
Sbjct: 322 VSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDV 381
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A++ ++M G PD+ T+N L+ +C +G L + D+ T
Sbjct: 382 DKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTV 441
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK 229
I + K +++A+ L C+L G K
Sbjct: 442 IQGMCKTGKVEDAWGLFCSLSLKGLK 467
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 22/155 (14%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMRE 139
I N + FN NC C + +M++ G+ PD+ T LVN +C ++ +
Sbjct: 116 IRNDLYTFN--IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSD 173
Query: 140 AQEFLQELSDKGFNPPVRSAKQMVNKMIK----------------QGSVPDLETFNSLIE 183
A + ++ + G+ P + + +++ + K +G P++ T+ +L+
Sbjct: 174 AVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVN 233
Query: 184 TICKSGELG----LCADVNTNKISIPAVSKEFMID 214
+C SG L D+ KI+ ++ ++D
Sbjct: 234 GLCNSGRWNDAARLLRDMIKRKITPNVITYSALLD 268
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGFVP---- 119
T + +I+ F + G +D A E F++ +F + YN L +C ++ K V
Sbjct: 367 TYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDM 426
Query: 120 -------DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
D T+T ++ C +GK+ +A LS KG P + + M++ + +G
Sbjct: 427 QKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQ 486
Query: 173 PDLETF 178
++E
Sbjct: 487 HEVEAL 492
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 30/139 (21%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
P+ T++IL++ C +G++ EA + QE+ +KG P R+ A +M
Sbjct: 263 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 322
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+++M + VP++ T+ LI+ +C+ G++ GLC + T I K
Sbjct: 323 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK 382
Query: 210 EFMIDEAFRLLCNLVEDGH 228
E + AF+LL +++E G+
Sbjct: 383 EGWVVSAFQLL-SVMEKGN 400
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 40/166 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ KG P RT+T+L+ A C G +A + L E++ K P V +
Sbjct: 291 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGK 350
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSG------------ELGLCA-DVNT-NK 201
A + KM+K G P + TFN+LI CK G E G C ++ T N+
Sbjct: 351 IEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNE 410
Query: 202 I--SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
+ + VSK + +AF LL +V++G L P ++ D FC
Sbjct: 411 LMEGLCRVSKSY---KAFLLLRRVVDNG--LLPDRVTYNILVDGFC 451
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 44/211 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RM 112
T + +I + K G + +A ++ + NC+ + YN L +C V R+
Sbjct: 372 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 431
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ G +PD+ T+ ILV+ +C G++ A ++ G P +
Sbjct: 432 VDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRL 491
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-GLC------------ADVNTNKIS 203
A ++ M+K+G D TF +LI+ CK G+ +C +T
Sbjct: 492 EQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCF 551
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
+ A+ K++ ++EA +L +++ G L PS+
Sbjct: 552 LDALGKDYKLNEANAMLGKMMKYG--LVPSV 580
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 79 LIDNAVEVFNKCTA----FNCQQCVL----LYNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
L +N VE N+C FNC L N + +M++ G VP THTIL+
Sbjct: 532 LFENMVE--NRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 589
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
C +G+ + + L+ + G +P V + ++N + G V + ET +
Sbjct: 590 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI------LFSMSS 643
Query: 191 LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G+ + T + + A K +D AF+++ +V++G
Sbjct: 644 FGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 680
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
+T +++I+ G+ D A+++ ++ C V Y L +C F +
Sbjct: 301 RTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRK 360
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ---------- 161
M++ G P T L+N +C G + A + L + P +R+ +
Sbjct: 361 MLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSK 420
Query: 162 ------MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
++ +++ G +PD T+N L++ CK G+L + ++
Sbjct: 421 SYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNI 462
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 54/181 (29%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
+ RM+ +GFV + +VNA C +G ++ A+ F ++ GF +V
Sbjct: 182 YRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCR 241
Query: 164 -----------NKMIKQGSV-PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
KM K+ + P+ T++ LI +C++G L
Sbjct: 242 RDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRL-------------------- 281
Query: 212 MIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPNRPV 258
+EAF+L +VE G + PS +G D A EM K PN
Sbjct: 282 --EEAFQLKQEMVEKGCQ--PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHT 337
Query: 259 Y 259
Y
Sbjct: 338 Y 338
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 30/139 (21%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
P+ T++IL++ C +G++ EA + QE+ +KG P R+ A +M
Sbjct: 240 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 299
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+++M + VP++ T+ LI+ +C+ G++ GLC + T I K
Sbjct: 300 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK 359
Query: 210 EFMIDEAFRLLCNLVEDGH 228
E + AF+LL +++E G+
Sbjct: 360 EGWVVSAFQLL-SVMEKGN 377
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 40/166 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ KG P RT+T+L+ A C G +A + L E++ K P V +
Sbjct: 268 MVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGK 327
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSG------------ELGLCA-DVNT-NK 201
A + KM+K G P + TFN+LI CK G E G C ++ T N+
Sbjct: 328 IEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNE 387
Query: 202 I--SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
+ + VSK + +AF LL +V++G L P ++ D FC
Sbjct: 388 LMEGLCRVSKSY---KAFLLLRRVVDNG--LLPDRVTYNILVDGFC 428
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 44/211 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RM 112
T + +I + K G + +A ++ + NC+ + YN L +C V R+
Sbjct: 349 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 408
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ G +PD+ T+ ILV+ +C G++ A ++ G P +
Sbjct: 409 VDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRL 468
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-GLC------------ADVNTNKIS 203
A ++ M+K+G D TF +LI+ CK G+ +C +T
Sbjct: 469 EQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCF 528
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
+ A+ K++ ++EA +L +++ G L PS+
Sbjct: 529 LDALGKDYKLNEANAMLGKMMKYG--LVPSV 557
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 79 LIDNAVEVFNKCTA----FNCQQCVL----LYNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
L +N VE N+C FNC L N + +M++ G VP THTIL+
Sbjct: 509 LFENMVE--NRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 566
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
C +G+ + + L+ + G +P V + ++N + G V + ET +
Sbjct: 567 HCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI------LFSMSS 620
Query: 191 LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G+ + T + + A K +D AF+++ +V++G
Sbjct: 621 FGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNG 657
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
+T +++I+ G+ D A+++ ++ C V Y L +C F +
Sbjct: 278 RTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRK 337
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ---------- 161
M++ G P T L+N +C G + A + L + P +R+ +
Sbjct: 338 MLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSK 397
Query: 162 ------MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
++ +++ G +PD T+N L++ CK G+L + ++
Sbjct: 398 SYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNI 439
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 54/181 (29%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
+ RM+ +GFV + +VNA C +G ++ A+ F ++ GF +V
Sbjct: 159 YRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCR 218
Query: 164 -----------NKMIKQGSV-PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
KM K+ + P+ T++ LI +C++G L
Sbjct: 219 RDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRL-------------------- 258
Query: 212 MIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPNRPV 258
+EAF+L +VE G + PS +G D A EM K PN
Sbjct: 259 --EEAFQLKQEMVEKGCQ--PSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHT 314
Query: 259 Y 259
Y
Sbjct: 315 Y 315
>gi|341605763|gb|AEK82984.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSIFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALXKHGKVDEAMTLFKRME 184
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 31/171 (18%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
D ++V P T + I+ G + A+EV ++ C V+ Y L C
Sbjct: 208 DRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGV 267
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
M KG PD T+ +L+N C G++ EA +FL + G P V
Sbjct: 268 GQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNII 327
Query: 157 -RS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
RS A+++++ M+++G P + TFN LI +C+ G LG D+
Sbjct: 328 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 378
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 34/221 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL+ A+++ K C L YN L F + M
Sbjct: 358 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 417
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD T+ L+ A C GK+ A E L +LS KG +P + + +++ + K G
Sbjct: 418 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 477
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
E L++ + + GL D+ T + +S+E +DEA + +L +G + P
Sbjct: 478 ---ERAIKLLDEMRRK---GLKPDIITYSSLVSGLSREGKVDEAIKFFHDL--EGLGIRP 529
Query: 233 S--------LG-----QFDDAFCFFSEMQIKTHPPNRPVYA 260
+ LG Q D A F + M K P Y
Sbjct: 530 NAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYT 570
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 32/154 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I + K G IDNA++V ++ N V+ YN++ +C R
Sbjct: 186 TYNVLISGYCKSGEIDNALQVLDR---MNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQ 242
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
++K PD T+TIL+ A C + +A + L E+ +KG P V + ++N + K+G +
Sbjct: 243 LQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 302
Query: 173 ----------------PDLETFNSLIETICKSGE 190
P++ T N ++ ++C +G
Sbjct: 303 DEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 73/248 (29%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
KPD + T +++I K G +D A++ N ++ CQ
Sbjct: 283 KPDVV-----TYNVLINGICKEGRLDEAIKFLNNMPSYGCQ------------------- 318
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------- 164
P+ TH I++ + CS+G+ +A++ L ++ KG +P V + ++N
Sbjct: 319 ---PNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRA 375
Query: 165 -----KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
KM G P+ ++N L+ CK ++ G D+ T + A
Sbjct: 376 IDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA 435
Query: 207 VSKEFMIDEAFRLL-------C-------NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
+ K+ +D A +L C N V DG +G+ + A EM+ K
Sbjct: 436 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG---LSKVGKTERAIKLLDEMRRKGL 492
Query: 253 PPNRPVYA 260
P+ Y+
Sbjct: 493 KPDIITYS 500
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 43/182 (23%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQE----------------FLQELSDKGFNPPVR 157
+ G VPD T+ +L++ +C SG++ A + L+ L D G ++
Sbjct: 177 QSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSG---KLK 233
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-------------DVNTNKISI 204
A +++++ +++ PD+ T+ LIE CK +G DV T + I
Sbjct: 234 QAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLI 293
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG-------HKLFP----SLGQFDDAFCFFSEMQIKTHP 253
+ KE +DEA + L N+ G H + S G++ DA S+M K
Sbjct: 294 NGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS 353
Query: 254 PN 255
P+
Sbjct: 354 PS 355
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 47/197 (23%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S +P T + ++ K G +D AVE+ N+ ++ C ++ YN++ +
Sbjct: 419 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 478
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M RKG PD T++ LV+ GK+ EA +F +L G
Sbjct: 479 RAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIR---------- 528
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADV-------------NTNKISIPAVSKE 210
P+ T+NS++ +CKS + D T I I ++ E
Sbjct: 529 ---------PNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYE 579
Query: 211 FMIDEAFRLLCNLVEDG 227
+ EA LL L G
Sbjct: 580 GLAKEALDLLNELCSRG 596
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +G +PD T L+ +C GK ++A ++ L + G+
Sbjct: 140 MVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILE-------------------QSGA 180
Query: 172 VPDLETFNSLIETICKSGEL 191
VPD+ T+N LI CKSGE+
Sbjct: 181 VPDVITYNVLISGYCKSGEI 200
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+W +E M+ S + T +I+ + + + AVE F K ++F + + YN L
Sbjct: 173 VWSLVEAMRCRS-CLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLID 231
Query: 106 -----------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H F M RKG F+PD +T+T+L+ W + + QE+ D G
Sbjct: 232 ILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIK 291
Query: 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVN 198
P V + +++ K G + ++ F+ + E+ C C +N
Sbjct: 292 PDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLIN 337
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 13/153 (8%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K ++ M+ + +T +I+ K I+ A +F + C+ + Y +
Sbjct: 384 FKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGM 443
Query: 109 FV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F +M KG +P + L+N C ++ EA + QE+ DKG PP
Sbjct: 444 FCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPP 503
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+ + +++ G + + +E + ++
Sbjct: 504 GQLFSNLKEALVEGGRITLAQEVTQRLEMLRRT 536
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 38/228 (16%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+KPD ++ ++I F K G D A++VF++ C +Y L M R
Sbjct: 290 IKPDVVAY-----GMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMER 344
Query: 115 -------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
GF + T ++ A+C + + A + + E+ G P R+
Sbjct: 345 LDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDI 404
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC-ADVNTNKISIPAVSKEFMIDEAFRLL 220
++N +IK + E +N L + + + G C ++NT + + +D A ++
Sbjct: 405 ILNHLIKSEKIE--EAYN-LFQRMERDG----CEPELNTYTMMVGMFCSNERVDMALKVW 457
Query: 221 CNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIK-THPPNR 256
+ E G +F +L + ++A +F EM K PP +
Sbjct: 458 KQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQ 505
>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 624
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 52/235 (22%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-- 104
S + +E + ++ +L+I G +D +E+ K F C+ ++ YN+
Sbjct: 169 SALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVL 228
Query: 105 ---------------------LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
+H +M + G PD R + +++ C G A E
Sbjct: 229 KGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEI 288
Query: 144 LQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
L + G P V A++++ +M ++ D TFN L++ C+
Sbjct: 289 LSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQ 348
Query: 188 SG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+G E G DV T I KE +IDEA LL N+ G K
Sbjct: 349 NGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCK 403
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ F ++GL+D +E+ + M+ G +PD T+T
Sbjct: 338 TFNILVDFFCQNGLVDRVIELLEQ----------------------MLEHGCMPDVITYT 375
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++N +C G + EA L+ + G P S A++++++MI+Q
Sbjct: 376 TVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQ 435
Query: 170 GSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEA 216
G +P+ TFN++I +CK G EL G D+ + I + K +EA
Sbjct: 436 GCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEA 495
Query: 217 FRLLCNLVEDG 227
LL ++ G
Sbjct: 496 LELLNVMINKG 506
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I F K GLID AV + + C+ + Y + +C RM
Sbjct: 373 TYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRM 432
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
I++G +P+ T ++N C G + +A E L+++ G NP + S
Sbjct: 433 IQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKT 492
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +++N MI +G P++ T++S+ + + G +
Sbjct: 493 EEALELLNVMINKGITPNVITYSSMAFALAREGRI 527
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 38/149 (25%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + II K GL++ A+E+ + M+ G PD +
Sbjct: 441 PVTFNTIINFLCKKGLVEQAIELLKQ----------------------MLVNGCNPDLIS 478
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
++ +++ +GK EA E L + +KG P V + M + ++G +
Sbjct: 479 YSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQ 538
Query: 173 -----PDLETFNSLIETICKSGELGLCAD 196
D +N++I ++CK E L D
Sbjct: 539 DATIRSDAVLYNAVISSLCKRRETDLAID 567
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKGFVPD 120
+ G ID +++F+ + +LYN++ +C R M+ G +P+
Sbjct: 521 LAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPN 580
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+ T+T L+ S G + EAQ+ L EL +
Sbjct: 581 ESTYTALIKGLASEGLLCEAQDLLSELCSR 610
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 106/243 (43%), Gaps = 56/243 (23%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
S + + S++I G+ G ++ A++VFN+ V Y+++ + R
Sbjct: 196 SEWSKLASIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALK 255
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGK--MREAQEFLQELSDKGFNPP---------- 155
M + G P+ T+ +++A C G +++A + +E+ +G P
Sbjct: 256 VFQAMKKAGCKPNLITYNTIIDA-CGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAV 314
Query: 156 ------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN----KISIP 205
++++ +M ++G D+ T+N+LI+ +CK G++ L A + ++ IS
Sbjct: 315 CSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPN 374
Query: 206 AVSKEFMID---------EAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
V+ MID EA L ++ E G + ++ LG+FDDA
Sbjct: 375 VVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACK 434
Query: 246 EMQ 248
+M+
Sbjct: 435 DME 437
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 26/149 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ +GK G +A +F+K A VL Y++L FV
Sbjct: 447 TYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEF 506
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G PD ++ L+++ C G + +A LQE++ G P + + +++ + G V
Sbjct: 507 KRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQV 566
Query: 173 PDLET---------FNSL----IETICKS 188
++E FN + E ICK+
Sbjct: 567 DNVEAAKGNMPINVFNKVGDRSTEIICKT 595
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S +I+ +GK G + A+ +++ + + YN+L + + M
Sbjct: 377 TYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDM 436
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG-- 170
R G D T+ L++A+ GK ++A ++ +G P V + +++ K G
Sbjct: 437 ERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMH 496
Query: 171 ----SV----------PDLETFNSLIETICKSG 189
S+ PD+ ++SLI++ CK G
Sbjct: 497 QDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCG 529
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S +I F D A E+F + C+ + YN L H F +M
Sbjct: 229 TYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 288
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PDK T+T L+ +C+ GK+ +A E E+ KG +P V + ++ + G
Sbjct: 289 VERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKP 348
Query: 173 PDL-ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
+ + F ++ CK D ++ I I +SK +D+A + + +D H
Sbjct: 349 GEARQLFQVMVSRECK-------PDTVSHNIMIDGLSKAKRLDDAVEVFERMEQD-HGCS 400
Query: 232 PSLGQFD 238
P L ++
Sbjct: 401 PDLVTYN 407
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 41/146 (28%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +I+E K G +D+A+ + MI++G+ PD TH+
Sbjct: 51 TCHSVIQELCKAGRVDSALSLLET----------------------MIKRGYCPDMATHS 88
Query: 126 ILVNAWCSSGKMREAQEFLQELSDK---------GFNP---------PVRSAKQMVNKMI 167
+L+N C + K++EAQEFLQ ++ +N V A + + M+
Sbjct: 89 MLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMV 148
Query: 168 KQGS-VPDLETFNSLIETICKSGELG 192
+ S VPD+ +++ LI+ CK ELG
Sbjct: 149 SERSVVPDVVSYSILIDGFCKIDELG 174
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 58/251 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVF---NKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF--- 117
T S++I E K I A E N+ + C YNSL +C + + + F
Sbjct: 86 THSMLINELCKADKIQEAQEFLQGMNRTISTRASSC-FSYNSLLNSLCKAKKVHQAFAIF 144
Query: 118 ---------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
VPD +++IL++ +C ++ A++ +++ D P V + +N +++
Sbjct: 145 STMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMR 204
Query: 169 QGSV----------------PDLETFNSLIETIC------KSGEL-------GLCADVNT 199
+G + PD+ T+++LI ++ EL G + T
Sbjct: 205 KGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVT 264
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG---HKL--------FPSLGQFDDAFCFFSEMQ 248
+ + KE DEA L +VE G K+ F ++G+ + A F EM
Sbjct: 265 YNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMV 324
Query: 249 IKTHPPNRPVY 259
K H P+ Y
Sbjct: 325 SKGHDPDVVAY 335
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 77 HGL-----IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR-------------KGFV 118
HGL +D A + ++ TA C + YN+L + R+ R K +
Sbjct: 267 HGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCL 326
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQEL-SDKGFNPPVRS----------------AKQ 161
PD+ T+T LV +C++ ++ EA+ L+ + + G +P V + A +
Sbjct: 327 PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 386
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCA---------DVNTNKISIPAVSKEFM 212
+ +MI + P+ T++SLI+ +CK+G + DV T I I +
Sbjct: 387 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDR 446
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDD---AFCFFSEM 247
+EA LL +V ++ PS+G F+ A C +M
Sbjct: 447 TEEALTLLEEMVN--KRVEPSVGTFNSVIGALCRLGDM 482
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 98/277 (35%), Gaps = 72/277 (25%)
Query: 32 ERTLNRLNLTLISELSMWKTIELMKP--DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVF 87
ERT N + L K E++K D SV P T S +I F K G +D A E+
Sbjct: 9 ERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEIL 68
Query: 88 NKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
+ + R G PD T+T +V+ C GKM A E ++E+
Sbjct: 69 RE---------------------MVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREM 107
Query: 148 SDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
KG P V A ++ +++ D + ++LI +C+ +
Sbjct: 108 KLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRI 167
Query: 192 GLC----------------ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL- 234
G DV T I K +++A ++L V +G K P++
Sbjct: 168 GEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLG--VMEGRKCVPNVV 225
Query: 235 ------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G D A F M K PN Y
Sbjct: 226 TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTY 262
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 41/164 (25%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
PD T+T L++ +C SG + +A + L + + P V + A +
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC- 221
+M +G VP++ T+ +LI GLCA +K+ + ++DE C
Sbjct: 247 FRRMTSKGCVPNVVTYTTLIH--------GLCA---AHKVD----AARLLMDEMTATCCP 291
Query: 222 ------NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
N + DG + LG+ ++A F EM K+ P+R Y
Sbjct: 292 ADTVSYNALLDG---YCRLGRIEEAKQLFKEMAAKSCLPDRITY 332
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-KGFNPPVRSAKQMVNKMIKQGS 171
+R+ P++RT+ ++VN C + +A E L+E+ D K P + + ++N KQG
Sbjct: 1 MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60
Query: 172 V-----------------PDLETFNSLIETICKSGEL 191
+ PD+ T+ S+++ +C+ G++
Sbjct: 61 MDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKM 97
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 57/209 (27%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
L KT + PD + T S+++ + + A E + A N + Y+SL
Sbjct: 352 LENMKTAAGIDPDVV-----TYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSL 406
Query: 106 --HVC-------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+C + +++ PD T+TI++ C + + EA L+E
Sbjct: 407 IDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEE---------- 456
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
MVNK ++ P + TFNS+I +C+ G++ DEA
Sbjct: 457 -----MVNKRVE----PSVGTFNSVIGALCRLGDM----------------------DEA 485
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFS 245
++LL + H L P + + FS
Sbjct: 486 WKLLVAMA--AHGLEPGMVTYTTLLEGFS 512
>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
Length = 815
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 104/263 (39%), Gaps = 36/263 (13%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIE 72
DY H+++ H I L ++W ++ M+ L P+T ++I E
Sbjct: 92 DYHPTYAHVSSSFDHAIDIAGRLRDYK-------TLWTLVDRMRTRRLGPNPKTFAIITE 144
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWC 132
+ G D A+++F C Q + +N++ + R +K + +
Sbjct: 145 RYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFK--VFRGFF 202
Query: 133 SSGKMREAQEFLQELSDK----------------GFNPPVRSAKQMVNKMIKQGSVPDLE 176
+G+++EA EF ++ + G VR A+++ N+MI +G +P +
Sbjct: 203 RAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVA 262
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
T+N+ I+ +CK + V + + + R LC+ +G+
Sbjct: 263 TYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCH-----------VGR 311
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
+ A F + M+ PN +Y
Sbjct: 312 MEKAMEFMARMKDDECEPNVQIY 334
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 22/195 (11%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
W+ MK + T + ++ FG G + A VFN+ V YN+
Sbjct: 211 WEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQV 270
Query: 107 VC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C F M+RKG++P+ T+ +++ C G+M +A EF+ + D P
Sbjct: 271 LCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPN 330
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAV---SKEFM 212
V Q+ N +I+ D E + K G+ +++T I I A+ K
Sbjct: 331 V----QIYNVVIRY--FCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDY 384
Query: 213 IDEAFRLLCNLVEDG 227
+ A +LL +VE G
Sbjct: 385 LLTAGKLLIEMVERG 399
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 57/245 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRMIRKG 116
+I + G I+ A+++F T NC V Y L F M KG
Sbjct: 270 LIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
P+ T+T+L++ C KM EA++ L E+S+KG P V + +++ K+G +
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389
Query: 173 ------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMI--- 213
P+ T+N LI +CK + + L + K+S ++ +I
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQ 449
Query: 214 ------DEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPP 254
+ A+RLL + E+G L P G+ ++A F ++ K
Sbjct: 450 CKVNDLESAYRLLSLMNENG--LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA 507
Query: 255 NRPVY 259
N +Y
Sbjct: 508 NEVIY 512
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 23/202 (11%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S ++ + LM + L T S+ I+ K G ++ A +F+ A + ++Y +L
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ RM+ +P+ T+ +L+ C KM+EA + ++ G
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK 576
Query: 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
P V + ++ +M+K G+ L+ FN ++ LG DV T + A + M
Sbjct: 577 PTVVTYTILIGEMLKDGAFDHALKVFNHMV-------SLGYQPDVCTYTAFLHAYFSQGM 629
Query: 213 IDEAFRLLCNLVEDGHKLFPSL 234
++E ++ + E+G + P L
Sbjct: 630 LEEVDDVIAKMNEEG--ILPDL 649
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 48/244 (19%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
++ ++LM+ +S +T + +I K + A+ + NK ++ YNSL
Sbjct: 389 FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
+ M G VPD+ T+++ ++ C G++ EA + KG
Sbjct: 449 QCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN 508
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCA 195
+ A ++ +M+ +P+ T+N LIE +CK ++ L A
Sbjct: 509 EVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVA 568
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ T + V+ +I E +++D G FD A F+ M + P+
Sbjct: 569 KMLTMGVKPTVVTYTILIGE-------MLKD--------GAFDHALKVFNHMVSLGYQPD 613
Query: 256 RPVY 259
Y
Sbjct: 614 VCTY 617
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 46/201 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I E K G D+A++VFN M+ G+ PD T+T
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFN----------------------HMVSLGYQPDVCTYT 618
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----------------MIKQ 169
++A+ S G + E + + +++++G P + + +++ M+
Sbjct: 619 AFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT 678
Query: 170 GSVPDLETFNSLIETICKS-------GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
G P L + LI+ + E+G+ + N N + I V K + A +L
Sbjct: 679 GCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEK 738
Query: 223 LVEDGHKLFPSL-GQFDDAFC 242
+VE G + S+ G FC
Sbjct: 739 MVEHGCTIDVSIYGALIAGFC 759
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 44/191 (23%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++++ G PD T+T L+ C + + A E + KG S +++ + + G
Sbjct: 219 KIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAG 278
Query: 171 SV----------------PDLETFNSLIETICKSG-------------ELGLCADVNTNK 201
+ P + T+ LI + SG E G +V+T
Sbjct: 279 RINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYT 338
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQ 248
+ I + KE +DEA ++L + E G L PS+ G DDAF M+
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKG--LIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396
Query: 249 IKTHPPNRPVY 259
+ PN Y
Sbjct: 397 SNSCGPNTRTY 407
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
M+ +G + D +T+T+L+N + K+ +A+E +E+ KG P V S ++N
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+M+++G P++ +N L+ C+SGE+ ++ +++S+ + +
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL-LDEMSVKGLHPNAVT-- 699
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C ++ DG + G +AF F EM++K P+ VY
Sbjct: 700 ----YCTII-DG---YCKSGDLAEAFRLFDEMKLKGLVPDSFVY 735
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T ++++ K+ +D+A E+F + V Y L F
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ +G P+ + +L+ +C SG++ +A+E L E+S KG +P
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A ++ ++M +G VPD + +L++ C+
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 48/222 (21%)
Query: 54 LMKPDSLSVF--PQTLSLIIEEFGK-----------HGLIDNAVEVFNKCTAFNCQQCVL 100
L++ DSL V T SL+I+ K H ++ + + + K ++C CV+
Sbjct: 300 LVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINI--KPYMYDCCICVM 357
Query: 101 ----LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---- 152
+ F MI G +P + + L+ +C +R+ E L E+ +
Sbjct: 358 SKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISP 417
Query: 153 ------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG----------- 189
+ + A +V +MI G P++ + +LI+T ++
Sbjct: 418 YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKE 477
Query: 190 --ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
E G+ D+ I +SK +DEA L +VE+G K
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK 519
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ ++I F K G + A +F++ V++YN L F R M
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI----- 167
KG P+ T+ +++ +C SG + EA E+ KG P +V+
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV 748
Query: 168 ----------KQGSVPDLETFNSLIETICKSGELGLCADV 197
K+G FN+LI + K G+ L +V
Sbjct: 749 ERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEV 788
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
M+ +G + D +T+T+L+N + K+ +A+E +E+ KG P V S ++N
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+M+++G P++ +N L+ C+SGE+ ++ +++S+ + +
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL-LDEMSVKGLHPNAVT-- 699
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C ++ DG + G +AF F EM++K P+ VY
Sbjct: 700 ----YCTII-DG---YCKSGDLAEAFRLFDEMKLKGLVPDSFVY 735
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T ++++ K+ +D+A E+F + V Y L F
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ +G P+ + +L+ +C SG++ +A+E L E+S KG +P
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A ++ ++M +G VPD + +L++ C+
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ ++I F K G + A +F++ V++YN L F R M
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI----- 167
KG P+ T+ +++ +C SG + EA E+ KG P +V+
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV 748
Query: 168 ----------KQGSVPDLETFNSLIETICKSGELGLCADV 197
K+G FN+LI + K G+ L +V
Sbjct: 749 ERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEV 788
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 67/265 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
MK ++ + P T +++ G +D A + + A C+ V++Y +L F++
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M +G PD + L+ + +M EA+ FL E+ + G P
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527
Query: 157 ---------------RSAKQM---------------VNKMIKQGSVPDL-ETFNSLIETI 185
+ K+M +N+ K+G V + + S+++
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQ- 586
Query: 186 CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSL 234
G+ D T + + + K +D+A + + G F L
Sbjct: 587 ------GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL 640
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G A F EM + PN +Y
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIY 665
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ MK + + T + ++ FG G I A +VFN+ YN++
Sbjct: 272 WEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQV 331
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+ F M++KG+VP+ T+ +++ +G M +A EF++ + G P
Sbjct: 332 LCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPN 391
Query: 156 VRS----------------AKQMVNKMIKQGSVPDLETFNSLIETIC---KSGELGLCAD 196
V++ M KM QGS+P+L+T+N LI + KS +L +
Sbjct: 392 VQTYNVAIRYFCDAGDVEKGLSMFEKM-GQGSLPNLDTYNVLISAMFVRKKSEDLVVAGK 450
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
+ + + ++F + R+L L+ G++ F
Sbjct: 451 LLLEMVDRGFIPRKFTFN---RVLNGLLLTGNQAF 482
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/275 (17%), Positives = 106/275 (38%), Gaps = 79/275 (28%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV------- 99
++W + M+ + +T ++I E F G D A++VF C Q +
Sbjct: 130 TVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTIL 189
Query: 100 ----------LLYNSLH--------------------VCFVR-----------MIRKGFV 118
+ YN+L C ++ M+ +G
Sbjct: 190 DILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLT 249
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDK----------------GFNPPVRSAKQM 162
P T+ IL+ + +G+++EA EF ++ ++ G ++ A+++
Sbjct: 250 PTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKV 309
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
N+M+ +G +P T+N++I+ +CK + G ++ T + I +
Sbjct: 310 FNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFH 369
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFF 244
+D+A + + DG + P++ ++ A +F
Sbjct: 370 AGNMDKAMEFIERMKTDGCE--PNVQTYNVAIRYF 402
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
L+ E F K +D+ FN F CQ L + + +M+ G +PD T+T +
Sbjct: 343 GLLAEMFDKDCPLDDVT--FNILVDFLCQNG--LVDRVIEVLEQMLEHGCMPDVITYTTV 398
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGS 171
+N +C G + EA L+ ++ G P S A++++++MI+QG
Sbjct: 399 INGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGC 458
Query: 172 VPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEAFR 218
P+ TFN+LI +CK G EL G D+ + I + K DEA
Sbjct: 459 PPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALE 518
Query: 219 LLCNLVEDG 227
LL +V+ G
Sbjct: 519 LLNVMVKKG 527
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S +I ++GL + EV + C V +Y ++ VC RM
Sbjct: 254 TFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRM 313
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
G P+ + L+ CS+ + EA+ L E+ DK N V
Sbjct: 314 PSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLV 373
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+++ +M++ G +PD+ T+ ++I CK G
Sbjct: 374 DRVIEVLEQMLEHGCMPDVITYTTVINGFCKEG 406
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 64 PQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----------- 108
P T+ S I G I+ +++F + +LYN++ +C
Sbjct: 530 PNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEF 589
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
M+ G VP++ T+TIL+ S G ++EAQE L EL KG
Sbjct: 590 LAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 51/193 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + +I K GL++ A+E+ + M+ G PD +
Sbjct: 462 PVTFNTLINFLCKKGLVEQAIELLKQ----------------------MLVNGCSPDLIS 499
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNP---------PVRSAKQMVNKMIK-----Q 169
++ +++ +G EA E L + KG +P S + +NK+I+ Q
Sbjct: 500 YSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQ 559
Query: 170 GSV--PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
+ D +N++I ++CK GE G + +T I I ++ E +
Sbjct: 560 DTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVK 619
Query: 215 EAFRLLCNLVEDG 227
EA +L L G
Sbjct: 620 EAQEILTELCSKG 632
>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
Length = 341
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 50/195 (25%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K ++LM + + T +++I F K G++D A+++F
Sbjct: 169 KVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLF---------------------- 206
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
V M +G +PD T+ +V+ +C +GK+ EA + E+ +G P R+ + + +K
Sbjct: 207 VEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKA 266
Query: 170 GSVPDLE---------------TFNSLIETICKSG-------------ELGLCADVNTNK 201
G + D ++ +LI TICK G E G ++ T
Sbjct: 267 GRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFN 326
Query: 202 ISIPAVSKEFMIDEA 216
+ A+SKE D+A
Sbjct: 327 VVFEALSKESNTDDA 341
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 33/159 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC--------------- 108
T +++I K G +++A + A +C ++ YN+L +C
Sbjct: 76 TYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRL 135
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ KG P T+T++++A +AQ+ L + + G + + ++N+ K
Sbjct: 136 FEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAK 195
Query: 169 ----------------QGSVPDLETFNSLIETICKSGEL 191
+G +PD+ T+NS+++ CK+G++
Sbjct: 196 AGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKV 234
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 50/244 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E MK + + ++I+ KHG A+++ + +C + YN L +
Sbjct: 27 LEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCK 86
Query: 112 MIR----KGFV---------PDKRTHTILVNAWCSSGKMR----EAQEFLQELSDKGFNP 154
+ R +G V D T+ L++ C G R A +E+ DKG P
Sbjct: 87 VGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTP 146
Query: 155 PV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN 198
A+++++ M + G DL T+N LI K+G + D+
Sbjct: 147 TSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLF 206
Query: 199 T---NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ IP V + N V DG F G+ ++A F+EM+ + PN
Sbjct: 207 VEMPTRGCIPDV-----------VTYNSVVDG---FCKAGKVEEANKLFAEMKARGIFPN 252
Query: 256 RPVY 259
Y
Sbjct: 253 GRTY 256
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 33/139 (23%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSD-------KGFNPPV---------RSAKQMVNKM 166
T++ +V +C G+ R+A L+ + + K +N + + A +++ M
Sbjct: 6 TYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSM 65
Query: 167 IKQGSVPDLETFNSLIETICKSGEL----GLC---------ADVNTNKISIPAVSKE--- 210
PD+ T+N LI +CK G L GL D+ T I + ++
Sbjct: 66 ATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNG 125
Query: 211 -FMIDEAFRLLCNLVEDGH 228
F ++ AFRL +V+ GH
Sbjct: 126 RFRVERAFRLFEEMVDKGH 144
>gi|255685744|gb|ACU28361.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + +G + +A L + D+GFNP V + +
Sbjct: 3 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVV 62
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + ++ F + C+ GL + I + K +DEA RL
Sbjct: 63 VNGLCKNGRVEEAMDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRVDEAERLFE 115
Query: 222 NLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+ E G F G+ D+A F M+
Sbjct: 116 EMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRME 153
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 33/238 (13%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
++W + M+ L P+T ++I E + G AV VF + C Q + +N++
Sbjct: 110 TLWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTIL 169
Query: 107 --VC----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C + ++ F D ++ I+VN WC + +A E L+E+ ++G P
Sbjct: 170 DVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTP 229
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ + M+N + G E + +E + ++ DV T I + I
Sbjct: 230 NLTTYNIMLNGYFRAGQTN--EAWGFFLEMKKRKCDI----DVVTYTSVIHGLGVVGEIK 283
Query: 215 EAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPNRPVY 259
A + +V+DG + PS+ F ++A F EM + + PN Y
Sbjct: 284 RARNVFNQMVKDG--VLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITY 339
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 29/166 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-- 106
W MK + T + +I G G I A VFN+ V +N+L
Sbjct: 251 WGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQI 310
Query: 107 -----------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+ F M+++G+VP+ T+ +++ C G+M+ A E ++ + D P
Sbjct: 311 LCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPN 370
Query: 156 VRSAKQMVNKMIKQGSV----------------PDLETFNSLIETI 185
V++ ++ G + P+L+T+N LI ++
Sbjct: 371 VQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSM 416
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 31/171 (18%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
D ++V P T + I+ G + A+EV ++ C V+ Y L C
Sbjct: 151 DRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGV 210
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
M KG PD T+ +L+N C G++ EA +FL + G P V
Sbjct: 211 GQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNII 270
Query: 157 -RS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
RS A+++++ M+++G P + TFN LI +C+ G LG D+
Sbjct: 271 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 321
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 34/221 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL+ A+++ K C L YN L F + M
Sbjct: 301 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 360
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD T+ L+ A C GK+ A E L +LS KG +P + + +++ + K G
Sbjct: 361 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 420
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
E L++ + + GL D+ T + +S+E +DEA + +L +G + P
Sbjct: 421 ---ERAIKLLDEMRRK---GLKPDIITYSSLVSGLSREGKVDEAIKFFHDL--EGLGIRP 472
Query: 233 S--------LG-----QFDDAFCFFSEMQIKTHPPNRPVYA 260
+ LG Q D A F + M K P Y
Sbjct: 473 NAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYT 513
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 32/154 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I + K G IDNA++V ++ N V+ YN++ +C R
Sbjct: 129 TYNVLISGYCKSGEIDNALQVLDR---MNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQ 185
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
++K PD T+TIL+ A C + +A + L E+ +KG P V + ++N + K+G +
Sbjct: 186 LQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 245
Query: 173 ----------------PDLETFNSLIETICKSGE 190
P++ T N ++ ++C +G
Sbjct: 246 DEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 73/248 (29%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
KPD + T +++I K G +D A++ N ++ CQ
Sbjct: 226 KPDVV-----TYNVLINGICKEGRLDEAIKFLNNMPSYGCQ------------------- 261
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------- 164
P+ TH I++ + CS+G+ +A++ L ++ KG +P V + ++N
Sbjct: 262 ---PNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRA 318
Query: 165 -----KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
KM G P+ ++N L+ CK ++ G D+ T + A
Sbjct: 319 IDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA 378
Query: 207 VSKEFMIDEAFRLL-------C-------NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
+ K+ +D A +L C N V DG +G+ + A EM+ K
Sbjct: 379 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG---LSKVGKTERAIKLLDEMRRKGL 435
Query: 253 PPNRPVYA 260
P+ Y+
Sbjct: 436 KPDIITYS 443
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 43/182 (23%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQE----------------FLQELSDKGFNPPVR 157
+ G VPD T+ +L++ +C SG++ A + L+ L D G ++
Sbjct: 120 QSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSG---KLK 176
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-------------DVNTNKISI 204
A +++++ +++ PD+ T+ LIE CK +G DV T + I
Sbjct: 177 QAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLI 236
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG-------HKLFP----SLGQFDDAFCFFSEMQIKTHP 253
+ KE +DEA + L N+ G H + S G++ DA S+M K
Sbjct: 237 NGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS 296
Query: 254 PN 255
P+
Sbjct: 297 PS 298
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
S +P T + ++ K G +D AVE+ N+ ++ C ++ YN++ +
Sbjct: 362 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 421
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M RKG PD T++ LV+ GK+ EA +F +L G P + ++
Sbjct: 422 RAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIM 481
Query: 164 NKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+ K ++ +I CK E T I I ++ E + EA LL
Sbjct: 482 LGLCKSRQTDRAIDFLAYMISKRCKPTE-------ATYTILIEGIAYEGLAKEALDLLNE 534
Query: 223 LVEDG 227
L G
Sbjct: 535 LCSRG 539
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ +G +PD T L+ +C GK ++A ++ L + G+
Sbjct: 83 MVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILE-------------------QSGA 123
Query: 172 VPDLETFNSLIETICKSGEL 191
VPD+ T+N LI CKSGE+
Sbjct: 124 VPDVITYNVLISGYCKSGEI 143
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 32/149 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
MK + ++ T +++I FG+ GL+D A E+F + +C+ V+ YNS+
Sbjct: 208 MKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGD 267
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
H+ F M KG+ PD T++IL+ + S K V A
Sbjct: 268 LDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNK-------------------VDMACS 308
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ ++MI QG VP++ T+N L++ + + G+
Sbjct: 309 LFDEMIAQGCVPNIVTYNILLDCLERHGK 337
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ +M G PD T+ I+++++ G + +A E +E+ D P V + M+N + K
Sbjct: 205 YDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGK 264
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G DL+ + L + + E G DV T I I K +D A L ++ G
Sbjct: 265 NG---DLDEAHMLFKDM---QEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQG 317
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
H F RM D+ ++ A C++ K EA + L + +KG V + +
Sbjct: 132 HSVFCRMWSSHEKGDRDAFVSMLEALCNAEKTAEAIDLLHMMPEKGITTDVGMYNIIFSA 191
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ G + + +SL + K G+ DV T I I + + ++D+A L + +
Sbjct: 192 L---GKLKQVSFMSSLYD---KMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDD 245
Query: 226 DGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
K + S+ G D+A F +MQ K + P+ Y+
Sbjct: 246 SSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYS 291
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 29/145 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I +G+ GL+D A E+F A +C+ V+ YNSL H+ F M
Sbjct: 465 TYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM 524
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
KG+ PD T++IL+ + S K+ A E+ +G P +
Sbjct: 525 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 584
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSL 181
A ++ M +QG +PD T++ L
Sbjct: 585 EEAHKLYETMKQQGLIPDSITYSIL 609
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M G +PD T+ I+++++ G + +A E + + P V + ++N + K
Sbjct: 451 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGK 510
Query: 169 QGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKIS---IP-AVS 208
G + PD+ T++ LIE KS ++ + + IS P V+
Sbjct: 511 HGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVT 570
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
++D R E+ HKL+ ++ Q
Sbjct: 571 YNILLDCLERR--GKTEEAHKLYETMKQ 596
>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 426
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 25/154 (16%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH--VC---- 108
M PD++ T S +I+ GK G I ++ ++ A V+ Y+SL +C
Sbjct: 272 MTPDTI-----TYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGH 326
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F ++ KGF P+ T+ ILV+ C +G++++AQE +L KG+ VR
Sbjct: 327 FDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTV 386
Query: 162 MVNKMIKQ-------GSVPDLETFNSLIETICKS 188
M+N + ++ G P+ T+ +I + K+
Sbjct: 387 MINGLCREALFDEAYGCTPNAVTYEIIIRALFKN 420
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 47/180 (26%)
Query: 99 VLLYNSLHVC--------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+L+ + H+C ++++ G+ PD T T L+ C + ++++A F ++ K
Sbjct: 15 ILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIAK 74
Query: 151 GFNPPVRSAKQMVNKMIKQG--SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
GF S ++N + K G PD ++ +I +C
Sbjct: 75 GFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLC---------------------- 112
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPN 255
K+ ++ +A+ L C +V ++FP +GQ +DA F+EM++K PN
Sbjct: 113 KDKLVVDAYDLYCEMVV--KRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPN 170
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
+ F M K PD T++ L++ G++ + + E+ G + V + ++N +
Sbjct: 262 ILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVL 321
Query: 167 IKQGSV----------------PDLETFNSLIETICKSGEL-------------GLCADV 197
K G P++ T+N L++ +CK+G L G DV
Sbjct: 322 CKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDV 381
Query: 198 NTNKISIPAVSKEFMIDEAF 217
+ I + +E + DEA+
Sbjct: 382 RLYTVMINGLCREALFDEAY 401
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 42/229 (18%)
Query: 62 VFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC--------- 108
+FP T + +I F G +++A+ +FN+ N V +N L +C
Sbjct: 132 IFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGK 191
Query: 109 --FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-- 164
MI++ PD T + L++ + K +A+ ++ G +RS M+N
Sbjct: 192 SVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGL 251
Query: 165 ---KMIKQGSV-----------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
KM+ + + PD T+++LI+ + K G + D+ + A +
Sbjct: 252 SKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLID---EMRATGRS 308
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ LL L + GH FD A F++++ K PN Y
Sbjct: 309 ANVITYSSLLNVLCKSGH--------FDTAIRIFTKIKDKGFEPNMVTY 349
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 91/235 (38%), Gaps = 54/235 (22%)
Query: 41 TLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL 100
TLI+ L K+ E PD S+II K L+ +A +++ + V+
Sbjct: 85 TLINGLC--KSGETKAPDQF-----MYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVV 137
Query: 101 LYNSL--HVCFV-----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
YN+L C V M K VP+ + IL++ C G ++ + L +
Sbjct: 138 TYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVM 197
Query: 148 SDKGFNPPVRSAKQMVNK--MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
+ P V + +++ ++K+ + FN++ + G+ D+ + I I
Sbjct: 198 IKQSVKPDVVTCSSLIDGYFLVKKANKARY-IFNAMAQN-------GVTIDLRSYNIMIN 249
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+SK M+DEA L F EMQ K+ P+ Y+
Sbjct: 250 GLSKAKMVDEAVIL------------------------FKEMQFKSMTPDTITYS 280
>gi|341605803|gb|AEK83004.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605805|gb|AEK83005.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605823|gb|AEK83014.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYXVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 37/202 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM--------IRK-- 115
T S +I+ + K GL A+ +F + N + + YN++ R+ IR+
Sbjct: 297 TYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAM 356
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
GF D T+ L++++ GK REA L+E+ +G +P +
Sbjct: 357 EEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFH 416
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFM 212
R A + + K G PD+ +++L++ CK+G L L ++ N I ++ +
Sbjct: 417 RDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSL 476
Query: 213 IDEAFRLLCNLVEDGHKLFPSL 234
+D A+ C +V K FP L
Sbjct: 477 LD-AYGRQCLMVR---KTFPKL 494
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 43/205 (20%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC------------FVRMIR 114
S +I +G+ G + AVE+F C+ +++YN+ + C F M+
Sbjct: 159 SSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLE 217
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G PD+ T L++A + + E E+ ++G D
Sbjct: 218 QGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI-------------------ARD 258
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
T+N+LI T C+ G++ L A + + ++K I+ + ++ DG + L
Sbjct: 259 DVTYNTLIATYCRGGQMHLGAAL------METMAKSSGIEPSVITYSTMI-DG---YAKL 308
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G +A F EM+ + P+ Y
Sbjct: 309 GLAHEAIALFQEMRNQNVEPDGICY 333
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 22/118 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E MK S T S +I+ + KHG +A+ +F
Sbjct: 388 LEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVK-------------------- 427
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
+ G PD ++ LV+ C +G EA L+E++D G P V + +++ +Q
Sbjct: 428 --KAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQ 483
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 24/217 (11%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+W +E M+ L + T LI+ + + + AVE F K + F + + YN L
Sbjct: 180 VWSLVETMRCRGL-LSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLID 238
Query: 106 -----------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ M RKG FVPD +T+T+L+ W + + QE+ D G
Sbjct: 239 TLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIR 298
Query: 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
P V + +++ K G + ++ F + + C C +N + E
Sbjct: 299 PDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLIN-------GLGSEER 351
Query: 213 IDEAFRLLCNLVEDGHKL-FPSLGQFDDAFCFFSEMQ 248
+DEA + + + G + P+ A+C S+ Q
Sbjct: 352 LDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQ 388
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 24/111 (21%)
Query: 64 PQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK 121
PQ T ++++ F +G +D A++V+ + M KG +P
Sbjct: 439 PQLNTYTMMVGMFCSNGRVDMALKVWKQ----------------------MGEKGVLPCM 476
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ L+N C ++ EA + QE+ DKG PP + + +++ G +
Sbjct: 477 HMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVQGGRI 527
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 36/173 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-----QCVLLYNSLHV-- 107
++PD ++ ++I F K G D A++VF + A C C+L+ N L
Sbjct: 297 IRPDVVA-----YGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLI-NGLGSEE 350
Query: 108 -------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
F + GF + T +V A+C + K + A + + E+ P R+
Sbjct: 351 RLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYD 410
Query: 161 QMVNKMIKQ----------------GSVPDLETFNSLIETICKSGELGLCADV 197
+++ +IK G P L T+ ++ C +G + + V
Sbjct: 411 VILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKV 463
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MI 113
+ +I ++G ID E + K + Q ++LYN+L F + MI
Sbjct: 348 FTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
R+G PDK T+T L++ +C G + A E +E+ G ++ M K+G V
Sbjct: 408 RRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVI 467
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
D E +L E + G+ D T + + A K+ F+LL + DGH
Sbjct: 468 DAE--RALREML----RAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH 516
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGFV----- 118
++++ +F K G I +A +VF++ T + + V+ +N+L C V + GF
Sbjct: 242 VFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHM 301
Query: 119 ------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
PD T++ L+NA C KM A E+ ++G N +
Sbjct: 302 EKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQI 361
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
K+ KM+ +G PD+ +N+L+ CK+G+L
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDL 396
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 40/197 (20%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
+ H F M +G +P+ T L++ +G++ +E Q++ KG P +
Sbjct: 327 DGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTL 386
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKI 202
+A+ +V+ MI++G PD T+ +LI+ C+ G+ L + +++ N I
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGI 446
Query: 203 SIPAVS---------KEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFC 242
+ V KE + +A R L ++ G K F G F
Sbjct: 447 ELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFK 506
Query: 243 FFSEMQIKTHPPNRPVY 259
EMQ H PN Y
Sbjct: 507 LLKEMQSDGHIPNVVTY 523
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 46/187 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
++PD + T + +I+ F + G +D A+E+ + + + +++L +C +
Sbjct: 411 LRPDKV-----TYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSAL-ICGMCKEG 464
Query: 111 ----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
M+R G PD T+T++++A+C G + + L+E+ G P V
Sbjct: 465 RVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYN 524
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG----------ELGLC 194
++A +++ M+ G VPD T+N+L+E + E+G+
Sbjct: 525 VLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPEIGIV 584
Query: 195 ADVNTNK 201
AD+ + K
Sbjct: 585 ADLASYK 591
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++ ++ GF + IL+N +C G + +AQ+ E++ + P V S ++N K
Sbjct: 228 YMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCK 287
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL 191
G++ PD+ T+++LI +CK ++
Sbjct: 288 VGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKM 326
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
M+ +G + D +T+T+L+N + K+ +A+E +E+ KG P V S ++N
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+M+++G P++ +N L+ C+SGE+ ++ +++S+ + +
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL-LDEMSVKGLHPNAVT-- 699
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C ++ DG + G +AF F EM++K P+ VY
Sbjct: 700 ----YCTII-DG---YCKSGDLAEAFRLFDEMKLKGLVPDSFVY 735
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T ++++ K+ +D+A E+F + V Y L F
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ +G P+ + +L+ +C SG++ +A+E L E+S KG +P
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A ++ ++M +G VPD + +L++ C+
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ ++I F K G + A +F++ V++YN L F R M
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI----- 167
KG P+ T+ +++ +C SG + EA E+ KG P +V+
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV 748
Query: 168 ----------KQGSVPDLETFNSLIETICKSGELGLCADV 197
K+G FN+LI + K G+ L +V
Sbjct: 749 ERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEV 788
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 67/265 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
MK ++ + P T +++ G +D A + + A C+ V++Y +L F++
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M +G PD + L+ + +M EA+ FL E+ + G P
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527
Query: 157 ---------------RSAKQM---------------VNKMIKQGSVPDL-ETFNSLIETI 185
+ K+M +N+ K+G V + + S+++
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQ- 586
Query: 186 CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSL 234
G+ D T + + + K +D+A + + G F L
Sbjct: 587 ------GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL 640
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G A F EM + PN +Y
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIY 665
>gi|399107206|gb|AFP20367.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMTLFKRME 186
>gi|224576641|gb|ACN56994.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GLAINSXFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALXKHGKVDEAMXLFKRME 154
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 28/183 (15%)
Query: 93 FNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+NC + L ++ + + MI +G PD T +LV + C +GK+ EA+EF++ ++ G
Sbjct: 481 YNCCRMGCLKETIRI-YEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539
Query: 153 NPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
P S ++N +M K G P T+ SL++ +CK G L
Sbjct: 540 LPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEK 599
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
+ ++PA M + +C G D A F EM ++ P+
Sbjct: 600 FLKSLQNVPAAVDTVMCNTLITAMC-----------KSGNLDKAVSLFGEMVQRSILPDS 648
Query: 257 PVY 259
Y
Sbjct: 649 FTY 651
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P ++I + + G+I +++E+F + V N++ V+
Sbjct: 123 PSVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLK 182
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
M+++ PD T IL+N C+ G +++ +Q++ G+ P +
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
++A ++++ M +G D+ T+N LI +C+S
Sbjct: 243 RFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRS 276
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 44/194 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
++RM R G + T+T +++ C +G + EA L E+S G +P +
Sbjct: 391 YMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCR 450
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
++AK++V ++ + G P+ +++LI C+ G L G D T
Sbjct: 451 VGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFT 510
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD-------------DAFCFFSE 246
+ + ++ K + EA + + DG + P+ FD AF F E
Sbjct: 511 FNVLVTSLCKAGKVAEAEEFMRCMTSDG--ILPNAVSFDCLINGYGSSGEGLKAFSVFDE 568
Query: 247 MQIKTHPPNRPVYA 260
M H P Y
Sbjct: 569 MTKVGHHPTFFTYG 582
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 45/239 (18%)
Query: 34 TLNRLNLTLISELSMWKTIELMKPDSLSVFPQTL---SLIIEEFGKHGLIDNAVEVFNKC 90
T N L L +E S K+ LM+ S + T+ + ++ + K G A+E+ +
Sbjct: 195 TFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHM 254
Query: 91 TAFNCQQCVLLYNSL--HVC----------FVRMIRKGFV-PDKRTHTILVNAWCSSGKM 137
V YN L +C +R +RK + P++ T+ L+N + + GK+
Sbjct: 255 NLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKV 314
Query: 138 REAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSL 181
A++ L E+ G +P + A +M + M +G + ++ L
Sbjct: 315 LIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVL 374
Query: 182 IETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
++ +CK+ E G+C T I + K +DEA +L + +DG
Sbjct: 375 LDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDG 433
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 42/205 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-------CQQCVLLYNSLH------VCFVR 111
T +++I + +G I+ A ++ N T+ C V + N H +
Sbjct: 825 HTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHE 884
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------VRS------ 158
M ++G P+ R + L+N C G ++ A +E+ PP VR+
Sbjct: 885 MSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGK 944
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
A ++ M+K VP + +F +L+ CK+G + GL D+ + +
Sbjct: 945 ADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNV 1004
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I + + + AF L + DG
Sbjct: 1005 LITGLCAKGDMAIAFELFEEMKRDG 1029
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 61/292 (20%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSL--SVFPQ--TLSLIIEEFGKHGLI 80
+R D++ +L ++ + W + D L + P T + +I+ F K G +
Sbjct: 271 IRPDVFTYSSL----ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTIL 127
A ++F++ + ++ YNSL F M+ K +PD T+ L
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386
Query: 128 VNAWCSSGKMREAQEFLQELSDKG---------------FNPPVRSAKQMVNK-MIKQGS 171
+N +C + K+ + E +++S +G F QMV K M+ G
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
P++ T+N+L++ +CK+G+L + D+ T I + K +++ +
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506
Query: 219 LLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L C+L G K F G ++A+ F +M+ P+ Y
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 35/170 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
+M++ G+ P T L+N +C ++ EA + ++ + G+ P
Sbjct: 125 KMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHN 184
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKE 210
A +V +M+ +G PDL T+ ++I +CK GE L L + KI V
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID LC DDA F+EM K P+ Y+
Sbjct: 245 TVIDS----LCKYR-----------HVDDALNLFTEMDNKGIRPDVFTYS 279
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV-----CFVRM 112
T +I K G D A+ + NK + V++Y+++ HV F M
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG PD T++ L++ C+ G+ +A L ++ ++ NP V +
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETIC 186
A+++ ++MI++ P++ T+NSLI C
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFC 356
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I F + DNA VF + + ++ YN+L V F +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+ PD T+ I+ C +GK+ + + LS KG P V + M++
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
KM + G +PD T+N+LI + G+ A++
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 577
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S +I F G + +A+++FNK N + +N L F M
Sbjct: 232 TYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMM 291
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+++G +PD T+ L++ +C ++ A+ ++ G NP +RS
Sbjct: 292 MKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKV 351
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A + N+M + +P++ T+NSLI+ + KSG + G+ ++ T
Sbjct: 352 DKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSI 411
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I A+ K +D+A L+ + G
Sbjct: 412 IDALFKTHQVDKAIALITKFKDQG 435
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+ M+ KG P+ T++ L++ + GK+++A + ++ + P
Sbjct: 218 YSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCK 277
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
++ K + M+KQG +PD+ T+NSL++ C L +VNT K SI +
Sbjct: 278 DRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYC------LVKEVNTAK-SIFNTMAQGG 330
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ R N++ +G F + + D A F+EM K PN Y
Sbjct: 331 VNPDIRSY-NILING---FCKIKKVDKAMNLFNEMHCKNIIPNVVTY 373
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 41/199 (20%)
Query: 42 LISELSMWKTI-ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL 100
L+ E++ K+I M ++ ++ +++I F K +D A+ +FN+
Sbjct: 312 LVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNE----------- 360
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
M K +P+ T+ L++ SG++ A + + ++ D+G P + +
Sbjct: 361 -----------MHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYN 409
Query: 161 QMVNKMIK----------------QGSVPDLETFNSLIETICKSGELGLCADVNTNKISI 204
+++ + K QG P + T+ LI+ +CK G VNT + I
Sbjct: 410 SIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVE--GYDITVNTYNVMI 467
Query: 205 PAVSKEFMIDEAFRLLCNL 223
K+ + DEA LL +
Sbjct: 468 HGFCKKGLFDEALSLLSKM 486
>gi|255685896|gb|ACU28437.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 163
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 1 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 60
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + A +
Sbjct: 61 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEAYE 120
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 121 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 153
>gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+ E +GK GL+ A+ +FN+ T FNC + + +N+L F R G
Sbjct: 121 LFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSSEMG 180
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
F + IL+ W G+ +A + E+ ++ P V + AK
Sbjct: 181 FRLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAK 240
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ MIK+G P+ T+ L+E +C GE
Sbjct: 241 GLFKDMIKKGKRPNAVTYALLMEGLCSMGE 270
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 40/217 (18%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMI 113
+++I+ + K G A +VF++ + V+ YNSL ++C F MI
Sbjct: 188 FNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAKGLFKDMI 247
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV- 172
+KG P+ T+ +L+ CS G+ +EA++ L ++ +G P + ++N + K+G +
Sbjct: 248 KKGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFGVLMNDLGKKGKIE 307
Query: 173 ---------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217
PD+ +N LI +CK G++ A ++ I EA
Sbjct: 308 EAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAE-AYKTLFEMQIGGC-------EAN 359
Query: 218 RLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
++ DG F +G+F++ + M + H P
Sbjct: 360 AATYRMLADG---FCQVGEFEEGLKVLNAMLVSRHAP 393
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK-------- 160
+ M ++ F PD + IL+N C GK+ EA + L E+ G + +
Sbjct: 313 LLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFEMQIGGCEANAATYRMLADGFCQ 372
Query: 161 --------QMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+++N M+ P +ETFN + + KSG +
Sbjct: 373 VGEFEEGLKVLNAMLVSRHAPRIETFNCFVVGLMKSGSI 411
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 30/165 (18%)
Query: 87 FNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
FN F CQ+ L ++ V F +M KG P+ T++ ++ +GKM ++ E L E
Sbjct: 400 FNTIIGFLCQK-GLTMQAVEV-FKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNE 457
Query: 147 LSDKGFNPPVR---------------SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ KGFNP + A QMV+K+ G P +N+++ +C++G+
Sbjct: 458 MGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKT 517
Query: 192 GLCADVNTNKIS-------------IPAVSKEFMIDEAFRLLCNL 223
D+ +N +S I ++ E + EA LL L
Sbjct: 518 DQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTL 562
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV-----CFVRM 112
TLS++I + GL A+ + K + +C ++ YN++ HV M
Sbjct: 294 TLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNM 353
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
G P+ T+ ILV C++ + +A++ + ++S P + +
Sbjct: 354 QTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLT 413
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ +M ++G P+ T++S+IE + K+G++
Sbjct: 414 MQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKM 448
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 123 THTILVNAWCSSGKMREAQEFLQEL----SDKGFNP---------PVRSAKQMVNKMIKQ 169
T++ L + +C G++ EA+ + + S +NP VR A +++ M+ +
Sbjct: 122 TYSALADGYCRVGRLDEARRVVDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYR 181
Query: 170 GSVPDLETFNSLIETICKS 188
G PD+ T+N L+E CK
Sbjct: 182 GCAPDVVTYNILLEAACKG 200
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/166 (18%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS------- 104
I+LM+ + + T ++I++ + G +D A E+ N ++ C + YN+
Sbjct: 210 IDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRT 269
Query: 105 ------LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
+ M + P + T ++++++ C G + A L+++S + +
Sbjct: 270 AGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVT 329
Query: 159 AKQMVNKMIKQGSV----------------PDLETFNSLIETICKS 188
+V+ + +QG V P++ T+N L++ +C +
Sbjct: 330 YNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNA 375
>gi|255685928|gb|ACU28453.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685930|gb|ACU28454.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 172
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 10 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 69
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + A +
Sbjct: 70 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEAYE 129
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 130 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 162
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
+S ++E K G I+ A+ + + F + +YN+L + F RM
Sbjct: 334 AVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRM 393
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G P+ T++IL++ +C GK+ A FL E+ D G V ++N K G +
Sbjct: 394 GKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDI 453
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
E F + E I K E V T + + I++A RL + G + P
Sbjct: 454 SAAEGF--MAEMINKKLE----PTVVTYTSLMGGYCSKGKINKALRLYHEMT--GKGIAP 505
Query: 233 SL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
S+ G DA F+EM PNR Y
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTY 545
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 62/234 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + ++ + GLI +AV++FN+ +N + P++ T+
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVK----------------------PNRVTYN 546
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF------- 178
+++ +C G M +A EFL+E+++KG P S + +++ + G + + F
Sbjct: 547 VMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKG 606
Query: 179 ---------NSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEA--------- 216
L+ C+ G+ L +C ++ + + V +ID +
Sbjct: 607 NCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLF 666
Query: 217 FRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
F LL + + G K ++ S+ G F +AF + M + PN Y
Sbjct: 667 FGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 24/113 (21%)
Query: 96 QQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
Q+ V L+N+ I KG + + T+ +L+ +C G++ EA E + + G +P
Sbjct: 770 QKAVELHNA--------ILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPD 821
Query: 156 ----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
V+ A ++ N M ++G PD +N+LI C +GE+G
Sbjct: 822 CITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMG 874
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 40/185 (21%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-- 172
K PD T+ LV C + E + E+ F+P + +V + K+G +
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEE 350
Query: 173 --------------PDLETFNSLIETICKS-------------GELGLCADVNTNKISIP 205
P+L +N+LI+++CK G++GL + T I I
Sbjct: 351 ALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILID 410
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKL--FP---------SLGQFDDAFCFFSEMQIKTHPP 254
+ +D A L +V+ G KL +P G A F +EM K P
Sbjct: 411 MFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEP 470
Query: 255 NRPVY 259
Y
Sbjct: 471 TVVTY 475
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-----KM 166
MI +G VP++ T+T ++N C +G + EA+ ++ PV S V +
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQ------PVSSVPNQVTYGCFLDI 761
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+ +G V D++ L I K GL A+ T + I ++ I+EA L+ ++ D
Sbjct: 762 LTKGEV-DMQKAVELHNAILK----GLLANTATYNMLIRGFCRQGRIEEASELITRMIGD 816
Query: 227 G 227
G
Sbjct: 817 G 817
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T S + ++G +D+A++V C+ V Y+++ C +M
Sbjct: 303 TFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQM 362
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
+ G +PD T L+ A C+ ++ EA + +EL+ KG +P V + ++N + K
Sbjct: 363 VDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDP 422
Query: 169 ------------QGSVPDLETFNSLIETICKSGELGLCADV 197
G PD T+N LI+ +C SG+L D+
Sbjct: 423 HLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDL 463
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 44/192 (22%)
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------------- 155
RM G P T +L+N +C G++ +A ++Q+ GF P
Sbjct: 255 ARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQN 314
Query: 156 --VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTN 200
V A +++ M+++G PD+ T++++I +C +GEL G D T
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTF 374
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEM 247
I A+ E ++EA L L G L P++ F+ +A C F EM
Sbjct: 375 NTLIVALCTENQLEEALDLARELTVKG--LSPNVYTFNILINALCKVGDPHLAVRLFEEM 432
Query: 248 QIKTHPPNRPVY 259
+ P+ Y
Sbjct: 433 KSSGCTPDEVTY 444
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 48/252 (19%)
Query: 32 ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQ---TLSLIIEEFGKHGLIDNAVEVFN 88
E T N L L S + K ++L+K +S PQ T + II+ K I+ A EVF+
Sbjct: 441 EVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFD 500
Query: 89 KCTAFNCQQCVLLYNSL--HVCFV-----------RMIRKGFVPDKRTHTILVNAWCSSG 135
+ + + +N+L +C +MI +G P+ T+ ++ +C G
Sbjct: 501 QMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQG 560
Query: 136 KMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK----------------QGSVPDLETFN 179
+ +A + LQ ++ GF V + ++N + K +G P + +N
Sbjct: 561 NISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYN 620
Query: 180 SLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFM-IDEAFRLLCNLVE 225
+I+++ + E+G D T KI + + I EAF L + +
Sbjct: 621 PVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMAD 680
Query: 226 DGHKLFPSLGQF 237
+G P F
Sbjct: 681 NG--FIPEFSSF 690
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 82/226 (36%), Gaps = 75/226 (33%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----------------- 151
F M G PD+ T+ IL++ CSSGK+ +A + L+E+ G
Sbjct: 429 FEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488
Query: 152 -------------------------FNP---------PVRSAKQMVNKMIKQGSVPDLET 177
FN + A ++V++MI +G P+ T
Sbjct: 489 RRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVT 548
Query: 178 FNSLIETICKSGELGLCADV----NTNKISIPAVSKEFMID---------EAFRLLCNLV 224
+NS++ CK G + AD+ N + V+ +I+ A +LL +
Sbjct: 549 YNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMR 608
Query: 225 EDGHKLFP--------SLGQFD---DAFCFFSEMQIKTHPPNRPVY 259
G K P SL + + DA F EM PP+ Y
Sbjct: 609 MKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTY 654
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 30/152 (19%)
Query: 71 IEEFGKHGLIDNAVE-VFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
I + + L D+A + V N+ F Q +YN L + M +G
Sbjct: 132 IGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQG 191
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSD--------------KGF--NPPVRSAK 160
PD T +++A C + + R A L+E+S +GF + +A
Sbjct: 192 IEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAAL 251
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
++ +M + G P T N LI CK G +G
Sbjct: 252 RLKARMSEMGCSPTSVTVNVLINGYCKLGRVG 283
>gi|341605691|gb|AEK82948.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605825|gb|AEK83015.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMXLFKRME 184
>gi|302769109|ref|XP_002967974.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
gi|300164712|gb|EFJ31321.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
Length = 376
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 51/214 (23%)
Query: 60 LSVFPQTLSLIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNSLHVCFVRMIR 114
LS F + L+ +++ + G I A+ V+N+ C A ++ L + M++
Sbjct: 77 LSKFSEALA-VLDVMAERGCIPPAI-VYNQLIDGLCKAGKVEEAFELSTT-------MVK 127
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RS 158
G P T+ L+N C GK EA++FLQE++D G+NP V ++
Sbjct: 128 NGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFKA 187
Query: 159 AKQMVNKMI-KQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217
A + ++M+ K G VPD ++ L+ +CK G + L +EF+ E
Sbjct: 188 AVDVFDEMVSKGGCVPDRASYMPLLIGLCKEGCVQLV--------------QEFL--EKH 231
Query: 218 RLLCNLVEDGHKL----FPSLGQFDDAFCFFSEM 247
R +L H L F G+ DDA F E+
Sbjct: 232 RARLDLGSFFHNLLISTFSKHGKLDDARKVFREL 265
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 35/152 (23%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTA-----FN------CQQCVLLYNSLHVCFVRMIRKG 116
+L+I F KHG +D+A +VF + + FN CQ+ L+ + V + ++ +KG
Sbjct: 243 NLLISTFSKHGKLDDARKVFRELASPELVHFNSFMSALCQR-KLISEAFQV-YEQLQKKG 300
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
VPD T+TIL+ C G+ +A LS K + MI+ PD
Sbjct: 301 LVPDTYTYTILIGGLCDVGRTDQA------LSLK-------------DTMIQNNCKPDSV 341
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVS 208
T+ L + K+G AD K +PA +
Sbjct: 342 TYGILRAGLLKAGRR---ADAEQLKAQMPAAA 370
>gi|260766045|gb|ACX50053.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 187
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 21/175 (12%)
Query: 86 VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
VF+ C++ L N + F MIRKG P+ +T+L++ + SG + +A L
Sbjct: 7 VFSLVIGGLCKEGKL--NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLH 64
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISI 204
+ D+GF P V + +VN + K G V + L+ F + C+ GL + I
Sbjct: 65 RMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQT-----CRFN--GLAINSMFYSSLI 117
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ K IDEA RL + E G + L +L G+ D+A F M+
Sbjct: 118 DGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 172
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 96/238 (40%), Gaps = 33/238 (13%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
++W I M+ + P+T +++ E + G D AV++F C Q + +N++
Sbjct: 103 TVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTIL 162
Query: 107 --VC----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C R +R F D T+ +++N WC + + E L+E+ ++G NP
Sbjct: 163 DVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINP 222
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ + M+ + G + F +E + E+ DV T + I
Sbjct: 223 NLTTYNTMLKGFFRAGQIRHAWEF--FLEMKKRDCEI----DVVTYTTVVHGFGVAGEIK 276
Query: 215 EAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPNRPVY 259
A + ++ +G + PS+ + ++A F EM + + PN Y
Sbjct: 277 RARNVFDEMIREG--VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTY 332
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ MK + T + ++ FG G I A VF++ V YN++
Sbjct: 244 WEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQV 303
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
V F M+R+G+ P+ T+ +L+ +G+ +E +Q + ++G P
Sbjct: 304 LCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPN 363
Query: 156 VRSAKQMVN----------------KMIKQGSVPDLETFNSLI 182
++ M+ KM +P+L+T+N LI
Sbjct: 364 FQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 406
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 35/158 (22%)
Query: 50 KTIELMKP---DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
KT+E++K ++ T + +++ F + G I +A E F + +C+ V+ Y ++
Sbjct: 207 KTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVV 266
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
F MIR+G +P T+ ++ C
Sbjct: 267 HGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDN----------------- 309
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V +A M +M+++G P++ T+N LI + +GE
Sbjct: 310 --VENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEF 345
>gi|399107190|gb|AFP20359.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFNGLAINSIFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMTLFKRME 186
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 104/250 (41%), Gaps = 57/250 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----------FVR-M 112
T + ++ F K G + + A + Q V+ YN L +C VR M
Sbjct: 12 TFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71
Query: 113 IRKGF--VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------RSA 159
I +G PD T++ L++ +C +GK+ E++E L+E+ +G P +SA
Sbjct: 72 ISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSA 131
Query: 160 K-----QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ +++ +MI+ G P L TFN+LI C+ L G+ ADV T
Sbjct: 132 RLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYN 191
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQI 249
+ + K + EA +LL + G + L S G+ DA +M+
Sbjct: 192 TLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKS-GKVLDAHQVLEQMRD 250
Query: 250 KTHPPNRPVY 259
H PN Y
Sbjct: 251 SHHDPNVVTY 260
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 35/161 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNK-CTAFNCQQCVLLYNSL--HVCFV-----------R 111
T + I++ K G ID A+E+ + ++ C V+ Y+++ +C +
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M R G PD T++ LVN C +GK+ EA E ++E++ +G P
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378
Query: 156 VRSAKQMVNKMIKQGSV-----PDLETFNSLIETICKSGEL 191
+ A++MV +M G P + T+N+LI +CK+G +
Sbjct: 379 LAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRI 419
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM G PD ++ V C SGK+ +A + L+++ D +P V + +++ + K G
Sbjct: 212 RMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSG 271
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK- 229
+ +T ++E + S GL +V + + K EA ++ + G +
Sbjct: 272 KI---DTALEMMEQMASSDGCGL--NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRP 326
Query: 230 ---LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ SL G+ ++A EM ++ PN Y
Sbjct: 327 DVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 34/156 (21%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------HVCFVR-MIR 114
S +++ K G A V C+ V+ Y+SL V VR M
Sbjct: 297 STVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAM 356
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----PP--------------- 155
+G P+ T+ LV+ CS G++ EA+ ++E+S G PP
Sbjct: 357 EGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKA 416
Query: 156 --VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A + +M QG PD ++++++E + +SG
Sbjct: 417 GRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSG 452
>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 473
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 56/250 (22%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-- 104
+MW+ ++ M D +T +L+I G+ GL AV F K FN + YN+
Sbjct: 167 AMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAIL 226
Query: 105 -----------LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ + +M+ GF PD T+ IL+ GKM E++ GF+
Sbjct: 227 NSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFS 286
Query: 154 P-----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
P P+ +A +N M + G P + + +LI+ + ++G L C
Sbjct: 287 PDSYTYNILLHILGKGNKPL-AALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEAC-- 343
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLC-------NLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
++ +DE + C ++ G+ + G+ D A F EM +
Sbjct: 344 -------------KYFLDEMVKAGCRPDVVCYTVMITGYVV---SGELDKAKEMFREMTV 387
Query: 250 KTHPPNRPVY 259
K PN Y
Sbjct: 388 KGQLPNVFTY 397
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M D S T ++++ GK A+ N VL Y +L R
Sbjct: 280 MARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGN 339
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M++ G PD +T+++ + SG++ +A+E +E++ K
Sbjct: 340 LEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVK----------- 388
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL 191
G +P++ T+NS+I +C +GE
Sbjct: 389 --------GQLPNVFTYNSMIRGLCMAGEF 410
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KG +P+ T+ ++ C +G+ REA L+E+ +G NP +V+ + K
Sbjct: 382 FREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRK 441
Query: 169 QGSVPDLETFNSLIETICKSG 189
G + + +I + K G
Sbjct: 442 AGKLSEAR---KVIREMVKKG 459
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 49/199 (24%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------- 156
LHV M G+ T+T L++ C SG + AQ LQ+++D G P V
Sbjct: 33 LHV----MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALID 88
Query: 157 --------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG--------------ELGLC 194
A Q V +M++ G PDL T+NSLI +C + E G
Sbjct: 89 GLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRI 148
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF-------------DDAF 241
DV T I + K +D+ +L + G + P + F DDAF
Sbjct: 149 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGG--ISPDVVTFCSIISGLCKANRIDDAF 206
Query: 242 CFFSEMQIKTHPPNRPVYA 260
F M + P+ Y+
Sbjct: 207 QVFKGMLERGCVPDSLTYS 225
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR------------ 111
T + +I+ K +A++ + C+ ++ YNSL +C
Sbjct: 82 TYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQEL 141
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI G +PD T+ ++ C +GK+ + E L+E+ G +P V + +++ + K
Sbjct: 142 MIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANR 201
Query: 172 VPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ D + F ++E C L T I + +S+ +D +L ++V+ GH
Sbjct: 202 IDDAFQVFKGMLERGCVPDSL-------TYSIMLDNLSRANRLDTVEEVLEHMVKSGH 252
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 35/161 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ + + G V + TH + A C SGK A+ L + + G P + S +++ + K
Sbjct: 279 YEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCK 338
Query: 169 QGSV-----------------PDLETFNSLIETICKSGELG----LCADVNTNKISIPAV 207
G+V PD+ FN+LI CK+G L L ++ I +P V
Sbjct: 339 SGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDV 398
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
+ N + DG F SL Q A EMQ
Sbjct: 399 -----------VTYNTMIDGQSKFGSLKQ---AKLLLEEMQ 425
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 66/245 (26%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112
E MK L+ T + +I+ +GK GL+D +V +F + C+
Sbjct: 156 EQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCE---------------- 199
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS- 171
PD T+ L+N++C M A EF +E+ DK P V S +++ + K+G
Sbjct: 200 ------PDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMM 253
Query: 172 ---------------VPDLETFNSLIETICKSGELG---LCAD------VNTNKIS---- 203
+P+ T++SLI+ CK+G LG + AD V+ N ++
Sbjct: 254 QMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTL 313
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIK 250
+ + +E M++EA L + + G + P+L + D A F+EM+ K
Sbjct: 314 LDGLCEEGMMNEAEELFRAMGKAG--VTPNLQAYTALIHGHIKVRSMDKAMELFNEMREK 371
Query: 251 THPPN 255
P+
Sbjct: 372 DIKPD 376
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
CF+RM + +P R+ ++ +G+ +++F +++ G P V + M+ +
Sbjct: 84 CFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVC 143
Query: 168 KQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
K+G D+ T SL E + K +GL D+ T I K ++DE+ L + G
Sbjct: 144 KEG---DMLTARSLFEQMKK---MGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMG 197
Query: 228 --------HKLFPSLGQFDD---AFCFFSEMQIKTHPPNRPVYA 260
+ L S +F AF FF EM+ K PN Y+
Sbjct: 198 CEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYS 241
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 53/232 (22%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTI 126
+D A+E+FN+ + + +LL+ ++ + M G + +T
Sbjct: 358 MDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTT 417
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-------------- 172
L++A+ +G EA L+E+ D G V + +++ + K+G V
Sbjct: 418 LMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHD 477
Query: 173 --PDLETFNSLIETICKS---GELGLCADVNTNKISIP-AVSKEFMID---------EAF 217
P++ + +LI+ +CK+ G+ D +K IP ++ MID EA
Sbjct: 478 LQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEAL 537
Query: 218 RLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTHPPNRPV 258
+ ++E G +L + SL GQ A F +EM K P+ +
Sbjct: 538 NMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETL 589
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 53/233 (22%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTI 126
+ L+ EF LID C A N + +L + M+++ + T+T
Sbjct: 266 VGLLPNEFTYSSLIDA------NCKAGNLGEAFMLAD-------EMLQEHVDLNIVTYTT 312
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNP-------------PVRS---AKQMVNKMIKQG 170
L++ C G M EA+E + + G P VRS A ++ N+M ++
Sbjct: 313 LLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKD 372
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNT----NKISIPAVSKEFMIDEAFRL-----LC 221
PD+ + +++ +C +L C + T + I V ++D F+
Sbjct: 373 IKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAI 432
Query: 222 NLVEDGHKL--------FPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
NL+E+ L F +L G +A +F M PN VY
Sbjct: 433 NLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVY 485
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 42/215 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
MK + P + +++ + K G A+ + + + V+ + +L +C
Sbjct: 403 MKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGL 462
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
F RM P+ +T L++ C + + +A++ E+ DK P
Sbjct: 463 VQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTA 522
Query: 156 ----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
+ A M NKM++ G DL + SL+ + + G++ I
Sbjct: 523 MIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKG 582
Query: 206 AVSKEFM-------------IDEAFRLLCNLVEDG 227
+ E + IDEA L LVE G
Sbjct: 583 IIPDETLCTRLLRKHYELGNIDEAIELQNELVEKG 617
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 103/252 (40%), Gaps = 62/252 (24%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
M ++LM + +S +++ + K +ID A+ +F+K ++ Y +L
Sbjct: 326 MHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALID 385
Query: 106 HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--- 151
+C F +MI +G PD + LV C+ K +A+E E+ D+G
Sbjct: 386 ALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRL 445
Query: 152 ----FNP---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN 198
FN V A+++++ M++ G PD+ ++N+L++ C +G
Sbjct: 446 DTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGR-------- 497
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEM 247
IDEA +LL +V G K + + DDA+ F EM
Sbjct: 498 --------------IDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREM 543
Query: 248 QIKTHPPNRPVY 259
+K P+ Y
Sbjct: 544 LMKGLTPDVVTY 555
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 40/192 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F MI KG P+ T+T L++ + S GK +E + LQE+S G P
Sbjct: 225 FQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCK 284
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
A+ + + +I++G P++ + L+ G L G+ D +
Sbjct: 285 NGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHI 344
Query: 200 NKISIPAVSKEFMIDEAF---------RLLCNLVEDGHKL--FPSLGQFDDAFCFFSEMQ 248
I A +K+ MIDEA RL N+V G + LG+ DDA F++M
Sbjct: 345 FNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMI 404
Query: 249 IKTHPPNRPVYA 260
+ P+ V++
Sbjct: 405 DEGMTPDIFVFS 416
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G PDK T+ L++ +C + ++ +A +E+ KG P V + +++ + + G +
Sbjct: 512 GLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEA 571
Query: 176 -ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
E + S+I + + ++ T I I + K +DEAF++ +L
Sbjct: 572 KELYLSMINSRTQ-------MNIYTYNIIINGLCKNNFVDEAFKMFHSL 613
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 34/166 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVCF---- 109
+KPD + T + ++ + K ID+A +F + V+ YN+ LH F
Sbjct: 513 LKPDKV-----TYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGR 567
Query: 110 --------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ MI + T+ I++N C + + EA + L K + +A
Sbjct: 568 FSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANI 627
Query: 162 MVNKMIKQGS----------------VPDLETFNSLIETICKSGEL 191
M+ ++K G VPD+ET+ + E + K G L
Sbjct: 628 MIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSL 673
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 53/243 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRMIRKG 116
+I + G I+ A+++F T NC V Y L F M KG
Sbjct: 270 LIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
P+ T+T+L++ C KM EA++ L E+S+KG P V + +++ K+G +
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389
Query: 173 ------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMI--- 213
P+ T+N LI +CK + + L + K+S ++ +I
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQ 449
Query: 214 ------DEAFRLLCNLVEDG-------HKLFPSL----GQFDDAFCFFSEMQIKTHPPNR 256
+ A+RLL + E+G + +F G+ ++A F ++ K N
Sbjct: 450 CKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANE 509
Query: 257 PVY 259
+Y
Sbjct: 510 VIY 512
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 23/202 (11%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S ++ + LM + L T S+ I+ K G ++ A +F+ A + ++Y +L
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ RM+ +P+ T+ +L+ C KM+EA + ++ G
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK 576
Query: 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
P V + ++ +M+K G+ L+ FN ++ LG DV T + A + M
Sbjct: 577 PTVVTYTILIGEMLKDGAFDHALKVFNHMV-------SLGYQPDVCTYTAFLHAYFSQGM 629
Query: 213 IDEAFRLLCNLVEDGHKLFPSL 234
++E ++ + E+G + P L
Sbjct: 630 LEEVDDVIAKMNEEG--ILPDL 649
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 48/244 (19%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
++ ++LM+ +S +T + +I K + A+ + NK ++ YNSL
Sbjct: 389 FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP- 154
+ M G VPD+ T+++ ++ C G++ EA + KG
Sbjct: 449 QCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN 508
Query: 155 ---------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCA 195
+ A ++ +M+ +P+ T+N LIE +CK ++ L A
Sbjct: 509 EVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVA 568
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ T + V+ +I E +++D G FD A F+ M + P+
Sbjct: 569 KMLTMGVKPTVVTYTILIGE-------MLKD--------GAFDHALKVFNHMVSLGYQPD 613
Query: 256 RPVY 259
Y
Sbjct: 614 VCTY 617
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 44/191 (23%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++++ G PD T+T L+ C + + A E + KG S +++ + + G
Sbjct: 219 KIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAG 278
Query: 171 SV----------------PDLETFNSLIETICKSG-------------ELGLCADVNTNK 201
+ P + T+ LI + SG E G +V+T
Sbjct: 279 RINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYT 338
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQ 248
+ I + KE +DEA ++L + E G L PS+ G DDAF M+
Sbjct: 339 VLIDGLCKENKMDEARKMLSEMSEKG--LIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396
Query: 249 IKTHPPNRPVY 259
+ PN Y
Sbjct: 397 SNSCGPNTRTY 407
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 43/194 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I E K G D+A++VFN M+ G+ PD T+T
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFN----------------------HMVSLGYQPDVCTYT 618
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----------------MIKQ 169
++A+ S G + E + + +++++G P + + +++ M+
Sbjct: 619 AFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT 678
Query: 170 GSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
G P L + LI+ + + ++I I +VS + A +L +VE G
Sbjct: 679 GCKPSLYIVSILIKNLSHENRM----KETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCT 734
Query: 230 LFPSL-GQFDDAFC 242
+ S+ G FC
Sbjct: 735 IDVSIYGALIAGFC 748
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 101/250 (40%), Gaps = 59/250 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I G +D AV + ++ + + + V+ +N L F + M
Sbjct: 265 TYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDM 324
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
++G P+ T+T L++A+C G+M +A + D+G P V
Sbjct: 325 EKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDV 384
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------------------- 191
++A+ ++N+M+ + D+ T+N LI+++CK GE
Sbjct: 385 KAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTL 444
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
G C + N I E +A + N++ G F G+ +DA +EM
Sbjct: 445 MDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKG---FCLKGRLEDANGLLNEMLE 501
Query: 250 KTHPPNRPVY 259
+ PNR Y
Sbjct: 502 RGLVPNRTTY 511
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 47/222 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVCFVR--M 112
T +++I+ F K + A+ VF + + V+ YN L +R M
Sbjct: 230 TYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQM 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ P+ TH +L+N +C + + EA ++ +G +P +
Sbjct: 290 VSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRM 349
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A + N MI +G P++ T+N LI +C+ G++ L ADV T I
Sbjct: 350 EDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNIL 409
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
I ++ K+ +A +LL + E G L PS ++ D +C
Sbjct: 410 IDSLCKKGESRKAVKLLDEMFEKG--LNPSHVTYNTLMDGYC 449
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------- 106
M LS T +++I+ K G AV++ ++ + YN+L
Sbjct: 394 MVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGN 453
Query: 107 -----VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ RM RKG + TH +L+ +C G++ +A L E+ ++G P + +
Sbjct: 454 LRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEI 513
Query: 162 MVNKMIKQGSVPDLE 176
+ +M+++G VPD+E
Sbjct: 514 IKEEMMEKGFVPDIE 528
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 86/218 (39%), Gaps = 47/218 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
+ ++++ K G ++ A +V + V+ YN+L + +M R
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216
Query: 115 -----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
KG P++ T+ IL++ +C + A E+ +G P V + ++N +
Sbjct: 217 KEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSD 276
Query: 170 GSV----------------PDLETFNSLIETICKSGEL-------------GLCADVNTN 200
G V P++ T N LI CK+ + G+ + T
Sbjct: 277 GKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTY 336
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
I A K+ +++AF L +++ G +FP + ++
Sbjct: 337 TTLIDAYCKDGRMEDAFALYNMMIDRG--IFPEVSTYN 372
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 43/198 (21%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------- 156
+ + MI++ + + I+VN C GK+ A + ++++ G +P V
Sbjct: 139 MEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLID 198
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKS----------GEL---G 192
A ++ +M+ +G P+ T+N LI+ CK GE+ G
Sbjct: 199 GYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQG 258
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-------HKL----FPSLGQFDDAF 241
L +V T I I + + +DEA L +V H + F ++A
Sbjct: 259 LRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAI 318
Query: 242 CFFSEMQIKTHPPNRPVY 259
F++M+ + PN Y
Sbjct: 319 NLFNDMEKQGVDPNAMTY 336
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 108/288 (37%), Gaps = 102/288 (35%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW + +M+ + ++ +T S+I+ ++ + D AV FN + + +NSL
Sbjct: 123 MWDVVAVMRKEGVANV-ETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLG 181
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAW------------------------ 131
+C + +RK F PD +T++IL+ W
Sbjct: 182 ALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPD 241
Query: 132 -----------CSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVN 164
C +G++ EA +Q++S +G P + A
Sbjct: 242 IVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFL 301
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
M K G VPD+ +N+L+ CK K+F D AFR++ ++
Sbjct: 302 DMEKDGIVPDVVVYNALVTAFCK--------------------VKKF--DNAFRVMDDM- 338
Query: 225 EDGHKLFP-------------SLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+GH + P SLG+ D+A+ F M IK P+ Y
Sbjct: 339 -EGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNM-IKRCKPDSDTY 384
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-H------------VCFVRM 112
T ++++ K G ++ AV V ++ CQ +Y+ L H F+ M
Sbjct: 244 TYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDM 303
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS- 171
+ G VPD + LV A+C K A + ++ G +P R+ ++N +I G
Sbjct: 304 EKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKD 363
Query: 172 --------------VPDLETFNSLIETICKSGELGLCADV 197
PD +T+ +I+ C++ ++ + V
Sbjct: 364 DEAYRVFRNMIKRCKPDSDTYTMMIKMFCENDKIEMALKV 403
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 27/119 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
I+ KPDS T +++I+ F ++ I+ A++V+ ++R
Sbjct: 374 IKRCKPDS-----DTYTMMIKMFCENDKIEMALKVWK--------------------YMR 408
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+ K F+P T ++L+N C G++ +A L+++ +KG PP + ++ ++K+G
Sbjct: 409 L--KQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEG 465
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 29/145 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I +G+ GL+D A E+F A +C+ V+ YNSL H+ F M
Sbjct: 407 TYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM 466
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
KG+ PD T++IL+ + S K+ A E+ +G P +
Sbjct: 467 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 526
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSL 181
A ++ M +QG +PD T++ L
Sbjct: 527 EEAHKLYETMKQQGLIPDSITYSIL 551
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M G +PD T+ I+++++ G + +A E + + P V + ++N + K
Sbjct: 393 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGK 452
Query: 169 QGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKIS---IP-AVS 208
G + PD+ T++ LIE KS ++ + + IS P V+
Sbjct: 453 HGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVT 512
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
++D R E+ HKL+ ++ Q
Sbjct: 513 YNILLDCLERR--GKTEEAHKLYETMKQ 538
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 43/224 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSL---------HVCFVRMIRK 115
T S+ ++ G + EV + C+ F N L SL H F RM
Sbjct: 270 TYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNS 329
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FN---------PPVRSA 159
D+ ++ C++ K EA + L + +KG +N V
Sbjct: 330 HEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFI 389
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+ +KM G +PD+ T+N +I + G +GL + S+ F + EA
Sbjct: 390 SNLFDKMKTNGIIPDVFTYNIMISSY---GRVGL----------VDKASELFEVMEASSC 436
Query: 220 LCNLVEDGHKLFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVYA 260
++V + L LG+ D+A F EMQ K + P+ Y+
Sbjct: 437 KPDVVT-YNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYS 479
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 29/145 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I +G+ GL+D A E+F A +C+ V+ YNSL H+ F M
Sbjct: 407 TYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM 466
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
KG+ PD T++IL+ + S K+ A E+ +G P +
Sbjct: 467 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 526
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSL 181
A ++ M +QG +PD T++ L
Sbjct: 527 EEAHKLYETMKQQGLIPDSITYSIL 551
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M G +PD T+ I+++++ G + +A E + + P V + ++N + K
Sbjct: 393 FDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGK 452
Query: 169 QGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKIS---IP-AVS 208
G + PD+ T++ LIE KS ++ + + IS P V+
Sbjct: 453 HGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVT 512
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
++D R E+ HKL+ ++ Q
Sbjct: 513 YNILLDCLERR--GKTEEAHKLYETMKQ 538
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 43/224 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSL---------HVCFVRMIRK 115
T S+ ++ G + EV + C+ F N L SL H F RM
Sbjct: 270 TYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNS 329
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FN---------PPVRSA 159
D+ ++ C++ K EA + L + +KG +N V
Sbjct: 330 HEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFI 389
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+ +KM G +PD+ T+N +I + G +GL + S+ F + EA
Sbjct: 390 SNLFDKMKTNGIIPDVFTYNIMISSY---GRVGL----------VDKASELFEVMEASSC 436
Query: 220 LCNLVEDGHKLFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVYA 260
++V + L LG+ D+A F EMQ K + P+ Y+
Sbjct: 437 KPDVVT-YNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYS 479
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 99/239 (41%), Gaps = 30/239 (12%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T +++I+ + G++D A+ +FN+ + V+ Y ++
Sbjct: 379 VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 438
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G PDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 439 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 498
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+ + ++N + K G V D + L + GL D + +
Sbjct: 499 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV------GLHPDAVVYNMLMDGYCLVGK 552
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+++A R+ +V G + + +G+ D+ F EM + P+ +Y+
Sbjct: 553 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 31/162 (19%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN------SLHVCFVR- 111
S+ P TLS+++ K+G I A +VF+ V YN + C V
Sbjct: 322 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 381
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-- 163
M+ G PD T +L+ A+ + G + +A E+ D G P V + + ++
Sbjct: 382 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 441
Query: 164 --------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
N+MI QG PD +N LI+ C G L
Sbjct: 442 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSL 483
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK--- 165
F M R +PD T ++L+ + C GK++EA++ ++ KG NP V S M+N
Sbjct: 315 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 374
Query: 166 -------------MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
M+ G PD TFN LI+ G L G+ DV T
Sbjct: 375 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 434
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I A+ + +D+A +++ G
Sbjct: 435 YRTVIAALCRIGKMDDAMEKFNQMIDQG 462
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKG 116
+I+ F K G ++ A ++F + ++ YNS+ +C R M+ K
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 287
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
+P+ T+ L+ + S+G+ +EA +E+ P V + A+
Sbjct: 288 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEAR 347
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ + M +G PD+ ++N ++ G L G+ D T + I A
Sbjct: 348 DVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAY 407
Query: 208 SKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNR 256
+ M+D+A + + + G K +G+ DDA F++M + P++
Sbjct: 408 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 467
Query: 257 PVY 259
Y
Sbjct: 468 YAY 470
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--NPPVRSAKQ 161
+L + R G VPD +++IL+ + C GK +A + L+ +++ G +P V +
Sbjct: 168 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 227
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKS 188
+++ K+G V PDL T+NS++ +CK+
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA 270
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDK 121
GK G D+ + + + A C V+ YN++ C F M+++G PD
Sbjct: 199 GKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 257
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T+ +V+A C + M +A+ FL+++ +K P + A ++ +
Sbjct: 258 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 317
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADV 197
M + +PD+ T + L+ ++CK G++ DV
Sbjct: 318 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 349
>gi|341605723|gb|AEK82964.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GLAINSMFYSSLIXGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMXLFKRME 184
>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 511
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 65/261 (24%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W+ I M ++L T ++I G A+ F+ +F + N H C
Sbjct: 123 WQLIIQMDQNNLQPNSHTFLILIRRLISAGFTRQAIRAFDDMESFIAETV----NQTHFC 178
Query: 109 FV--RMIRKG---------------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
F+ + + G F+P+ R +T+L+ WC G++ A+ F++E+ + G
Sbjct: 179 FLLDTLCKYGYIKVAVEVFNKRKFRFLPNVRIYTVLIYGWCKIGRIDMAERFIREMDEMG 238
Query: 152 --------------------------FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
F + A ++ ++M ++G PD+ +F+ L+
Sbjct: 239 IEANVVTYNVLLDGICRRAKLQPEGRFERTIMKADKVFDEMRQKGIEPDVTSFSILLHVY 298
Query: 186 CKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
++ E+G+C V T + + ID+A LL +V +G + P
Sbjct: 299 SRAHKPQLTVDKLKLMEEMGICPTVATYTSVLKCLCSCGRIDDAEELLEQMVRNG--VSP 356
Query: 233 SLGQFDDAFCFFSEMQIKTHP 253
+ ++ CFF E + + P
Sbjct: 357 NAATYN---CFFKEYRGRKDP 374
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 40/214 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----------HVCFV---RMIRKGF 117
I F K G ++ A+E+F+K V+ YN++ F+ +M+ +G
Sbjct: 259 INAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGV 318
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS------ 171
P T++ILV + ++ +A L+E+++KGF P V +++ +I+ GS
Sbjct: 319 EPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIE 378
Query: 172 VPDL----------ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
+ DL T+N+LI+ CKSG+ + + +SI + LLC
Sbjct: 379 IKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLC 438
Query: 222 NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ H + FD A F EM ++ P
Sbjct: 439 S-----HHM------FDSALRFVGEMLLRNMSPG 461
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 82/205 (40%), Gaps = 24/205 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
+LSL +E + + D +EV+ CT F C Y +L V F + KG P K T
Sbjct: 169 SLSLCFDEEIRRKMSDLLIEVY--CTQFKRDGC---YLALDV-FPVLANKGMFPSKTTCN 222
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
IL+ + + + ++ E + KG +P V +N K G V + IE
Sbjct: 223 ILLTSLVRATEFQKCCEAFHVVC-KGVSPDVYLFTTAINAFCKGGKVEEA------IELF 275
Query: 186 CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSL 234
K E G+ +V T I + DEAF +VE G K
Sbjct: 276 SKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKA 335
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ DA+C EM K PPN VY
Sbjct: 336 KRIGDAYCVLKEMTEKGFPPNVIVY 360
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 94/248 (37%), Gaps = 53/248 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S++++ K I +A V + T V++YN+L + M
Sbjct: 324 TYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLM 383
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ KG T+ L+ +C SG+ A+ L+E+ GFN
Sbjct: 384 VSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMF 443
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKIS 203
SA + V +M+ + P +LI +CK G EL G D T+
Sbjct: 444 DSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNAL 503
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTH 252
+ + + ++E FR+ ++ G + + +L + D+AF F EM K
Sbjct: 504 LHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGL 563
Query: 253 PPNRPVYA 260
P+ Y+
Sbjct: 564 KPDNYTYS 571
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 108 CFVR-MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
C +R M K P+K T+T+++ + G + EA L E+ +KG P + K+ +
Sbjct: 728 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGY 787
Query: 167 IKQGSV------PDLETFNSLIE 183
+KQG V D E + ++IE
Sbjct: 788 LKQGGVLQAFKGSDEENYAAIIE 810
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
++ +GFV D+ ++ L++ C + K+ EA F+ E+ KG P
Sbjct: 523 ILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNK 582
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
V A Q + G +PD+ T++ +I+ CK+
Sbjct: 583 VEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKA 615
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 35/171 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------- 152
+++ + KGF+ D +T L++ C +GK+ E +E+ +GF
Sbjct: 485 WLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCG 544
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVS 208
N + A +++M+K+G PD T++ LI + + + D N + +
Sbjct: 545 NKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYT 604
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
MID + E+G KL F EM PN VY
Sbjct: 605 YSVMIDGCCK--AERTEEGQKL-------------FDEMMSNNLQPNTVVY 640
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 27/162 (16%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------RSAK-- 160
R G +PD T++++++ C + + E Q+ E+ P RS +
Sbjct: 595 RNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLS 654
Query: 161 ---QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217
++ M +G P+ T+ SLI+ + + + V K+ + + E + F
Sbjct: 655 MALELREDMKHKGISPNSATYTSLIKG------MSIISRVEEAKLLLEEMRMEGLEPNVF 708
Query: 218 RLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ DG + LGQ C EM K PN+ Y
Sbjct: 709 HYTALI--DG---YGKLGQMVKVECLLREMHSKNVHPNKITY 745
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+ P+ + L+ A+C SG++ A E +++ KG +P
Sbjct: 625 FDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSI 684
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC---------ADVNTNKIS 203
V AK ++ +M +G P++ + +LI+ K G++ +V+ NKI+
Sbjct: 685 ISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKIT 744
Query: 204 ----IPAVSKEFMIDEAFRLLCNLVEDG 227
I +++ + EA RLL + E G
Sbjct: 745 YTVMIGGYARDGNVTEASRLLHEMREKG 772
>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
Length = 633
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ G PD T++ L++ CS+G++ EA L + ++G P
Sbjct: 244 MVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGR 303
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+ AK+++N MI G P T+N L+E +CK G G DV T
Sbjct: 304 IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSS 363
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
+ + K ID++F L+ ++ +G
Sbjct: 364 YMDGLCKAGRIDKSFALVDKMLSNG 388
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 39/201 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RM 112
T ++++E K G + + + TA V+ Y+S +C +M
Sbjct: 325 TYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKM 384
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ G P + T IL++ C S A+ L+ ++ G++ V
Sbjct: 385 LSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDERRW 444
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--GLC--------ADVNTNKISIPA 206
S ++ M K+G P+ TFN ++ ++CK G L LC A V T I
Sbjct: 445 LSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALCLLRSKEFVATVITYNTLIRH 504
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
+S +E LL ++E G
Sbjct: 505 LSISGEGNEVCLLLYQMIEGG 525
>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 107/294 (36%), Gaps = 97/294 (32%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
E+++P + S S++I+ G +D A+ +F C+Q VLLYN+L
Sbjct: 411 EMVRPXTTS-----FSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNS 465
Query: 106 ------HVCFVRMIRKGFVPDKRTH----------------------------------- 124
++ M GF P + TH
Sbjct: 466 NRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHY 525
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---------------- 168
T+LV C + EA FL E+ +GF P + + ++ +K
Sbjct: 526 TLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICA 585
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G PD+ +N+LI CK + GL V T + I K ID+
Sbjct: 586 RGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQ 645
Query: 216 AFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNR 256
AF L +V G + P++ G+ DDA ++EM+ K PNR
Sbjct: 646 AFHCLSRMV--GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNR 697
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 29/151 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIR 114
S I+ F K +D A+E+F A V+ YN+L H M+
Sbjct: 561 SAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVA 620
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RS 158
KG VP T+ +L++ WC +G + +A L + K P V
Sbjct: 621 KGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDD 680
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A + N+M +G P+ +F +LI +CK G
Sbjct: 681 AIHLWNEMRGKGCSPNRISFIALIHGLCKCG 711
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ-----CVLLYNSLHVC--------FVR 111
LS+++ F K G +D A E+ + + CVL++ + F +
Sbjct: 229 HVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKK 288
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M + GF PD + L+ C+ ++ +A L E+ + G +P + Q+++K+I S
Sbjct: 289 MQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDI----QILSKLIPYCS 344
Query: 172 ------------VPDLET------FNSLIETICKSGELG-----LCADVNTNKISIPAVS 208
+ DL+T +NS++ + + L A N V+
Sbjct: 345 EEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVN 404
Query: 209 KEFMIDEAFRLLC---NLVEDGHKLFPSLGQFDDAFCFFSEM 247
K FM+ E R ++V DG + G+ D A F +M
Sbjct: 405 KFFMVKEMVRPXTTSFSIVIDG---LCNTGKLDLALSLFRDM 443
>gi|224576653|gb|ACN57000.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 154
>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
Length = 327
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 40/189 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
MI G PD +V C G + A EF++ +S KG+ P V S
Sbjct: 50 EMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQR 109
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNK 201
+++++ M+ +G P++ T++ LI ++C+ G E GL D +
Sbjct: 110 KWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYD 169
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIK 250
I A KE +D A L +++ DG + + +L G+ D+A F ++
Sbjct: 170 PLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEV 229
Query: 251 THPPNRPVY 259
PPN Y
Sbjct: 230 GCPPNVSSY 238
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 29/144 (20%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKR 122
+ GL+D A E +A V+ Y+ L + M+ KG P+
Sbjct: 72 REGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVV 131
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T++IL+++ C GK+ EA L+ + ++G P S A + + M
Sbjct: 132 TYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESM 191
Query: 167 IKQGSVPDLETFNSLIETICKSGE 190
I G +PD+ +N+++ T+CK+G+
Sbjct: 192 ISDGCLPDIVNYNTILSTLCKNGK 215
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 42/207 (20%)
Query: 14 YFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQ----TLSL 69
Y +A + +++ + I LN+ W+ E + D LS + T S+
Sbjct: 85 YISAKGYAPDVISYSILLRGLLNQRK---------WEDGEKLMSDMLSKGCEPNVVTYSI 135
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I + G ++ AV + Y+ L F + MI G
Sbjct: 136 LISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDG 195
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
+PD + +++ C +GK EA + ++L + G P V S A
Sbjct: 196 CLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRAL 255
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICK 187
M+ +M+ + PD T+NSLI +C+
Sbjct: 256 GMILEMLSKDIDPDEITYNSLISCLCR 282
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 19/138 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
I++E + G + +A + K F CQ + + + F M + G PD T+TIL++
Sbjct: 439 IVKEMMRKGFVPDA-STYTKVITFLCQAKRV--DKAFLLFQEMKKVGVNPDVYTYTILID 495
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
++C +G + +AQ + E+ G +P V + A + ++M+ P
Sbjct: 496 SFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYP 555
Query: 174 DLETFNSLIETICKSGEL 191
+ T+++LI+ +CK+GE+
Sbjct: 556 NAITYSALIDGLCKAGEI 573
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 29/163 (17%)
Query: 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------ 105
D++S T ++ K + +A ++ + A C+ ++Y++L
Sbjct: 602 DTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDS 661
Query: 106 -HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
F+RM + G++P T+T L++ G++ A + L ++ NP V + MV+
Sbjct: 662 AQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVD 721
Query: 165 K----------------MIKQGSVPDLETFNSLIETICKSGEL 191
M K+G P++ T+ +LI+ + K+G++
Sbjct: 722 GLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKV 764
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 36/154 (23%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+ LM+ S T + +I+ GK G +D +E+F ++
Sbjct: 736 LSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELF----------------------MQ 773
Query: 112 MIRKGFVPDKRTHTILVNAWCSSG----------KMREAQ--EFLQ--ELSDKGFNPPVR 157
M KG P+ T+ IL+N C++G +M++ ++LQ + +GF+
Sbjct: 774 MKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFL 833
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++ ++ +M + P + LI++ K+G L
Sbjct: 834 ASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRL 867
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 54/154 (35%), Gaps = 30/154 (19%)
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-------- 173
R +LV C G EA E L L D G+ P + +V + G V
Sbjct: 170 RLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKE 229
Query: 174 --------DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
D T S + +CK G G D+ ++F +D +LC +
Sbjct: 230 MSASGFCMDRSTVGSFAQALCKEGRWGDALDLLER--------EDFKLDT---VLCTQMI 278
Query: 226 DGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G F++A F M+ ++ PN Y
Sbjct: 279 SG---LMEASLFNEAMSFLHRMRCNSYIPNVVTY 309
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 88/231 (38%), Gaps = 63/231 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S +I + G ++ A+EVF M+ G P+K T+T
Sbjct: 257 TFSTLIHGLCRTGELEKALEVFGS----------------------MLEAGCKPNKYTYT 294
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------- 172
L++ C + K+ +A+E ++++ P + ++ K+GS+
Sbjct: 295 TLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 354
Query: 173 ----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
P + TFN+LI+ CK G+L GL AD T +I I +S+ +DE
Sbjct: 355 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDE 414
Query: 216 AFRLLCNLVEDGHKLFP-----------SLGQFDDAFCFFSEMQIKTHPPN 255
A + + E L P G D A+ F + PN
Sbjct: 415 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPN 465
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 40/223 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S II+ K + + +V + A C V +N + F R M
Sbjct: 12 TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ G+ PD ++ IL++ GK+ E+ + L E+ +G P +++
Sbjct: 72 VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A + ++MI+ G PD F LI +C++G++ D + +P + +
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKV---KDASERFKQMPKHGCQPNVPVY 188
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LL L S GQ + A F+EM+ + P+ Y
Sbjct: 189 NVLLHGLC--------SSGQLEQANTLFAEMKSHSCSPDVVTY 223
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 43/196 (21%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
KPD++S ++I K G +D ++++ ++ + Y+SL
Sbjct: 77 KPDNVSYH-----ILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131
Query: 106 -HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
H F MIR G PD+ L+ C +GK+++A E ++
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQ---------------- 175
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFMIDEAFR 218
M K G P++ +N L+ +C SG+L L A++ ++ S V+ ++D +
Sbjct: 176 ---MPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK 232
Query: 219 LLCNLVEDGHKLFPSL 234
VE+G KLF ++
Sbjct: 233 --ARRVEEGCKLFEAM 246
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M + G P+ + +L++ CSSG++ +A E+ +P V + +++ + K
Sbjct: 173 FKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCK 232
Query: 169 ----------------QGSVPDLETFNSLIETICKSGEL 191
G VP++ TF++LI +C++GEL
Sbjct: 233 ARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGEL 271
>gi|255685974|gb|ACU28476.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 171
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 9 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 68
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + A +
Sbjct: 69 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEAYE 128
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 129 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 161
>gi|255685964|gb|ACU28471.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685966|gb|ACU28472.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685968|gb|ACU28473.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685970|gb|ACU28474.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685972|gb|ACU28475.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 171
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 9 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 68
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + A +
Sbjct: 69 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEAYE 128
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 129 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 161
>gi|224576657|gb|ACN57002.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 154
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 93/252 (36%), Gaps = 65/252 (25%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
WK MK L T + +I K +D AVE+F + CV YN++
Sbjct: 293 WKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMG 352
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+ R RKG +P + ++ GK+ EA E+
Sbjct: 353 YGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM-------- 404
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+Q + P+L T+N LI+ +CK+GEL GL ++ T I
Sbjct: 405 ------------RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNI 452
Query: 203 SIPAVSKEFMIDEA---------------FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
I + K +DEA R C+L+ DG G+ DDA+ + +M
Sbjct: 453 MIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLI-DG---LGRRGRVDDAYSLYEKM 508
Query: 248 QIKTHPPNRPVY 259
PN VY
Sbjct: 509 LDSDQIPNVVVY 520
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 101/252 (40%), Gaps = 58/252 (23%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----------- 105
PDS +T +I+ G+ G +D+A ++ K + V++Y SL
Sbjct: 480 PDS-----RTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKE 534
Query: 106 --HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
H + M+ +G PD ++ +G++ + + +E+ +G P VRS ++
Sbjct: 535 DGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILI 594
Query: 164 NKMIK----------------QGSVPDLETFNSLIETICKSGEL-------------GLC 194
+ ++K QG D+ +N++I+ CKSG++ GL
Sbjct: 595 HGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQ 654
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCF 243
V T + ++K +DEA+ L G L F +G+ D+A+
Sbjct: 655 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLI 714
Query: 244 FSEMQIKTHPPN 255
E+ K PN
Sbjct: 715 LEELMQKGLTPN 726
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCT---------AFNCQQCVLL----YNSLHVCFVRMIR 114
S +I+ FGK G ID A + + +NC L+ + VCF M
Sbjct: 696 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKN 755
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
P+ T++I++N C K +A F QE+ +G P V
Sbjct: 756 LKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVME 815
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETI 185
A+ + ++ G VPD +N++IE +
Sbjct: 816 ARGLFDRFKASGGVPDSACYNAMIEGL 842
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 29/170 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
++ +E MK L T +++ K +D A +F + + V++Y+SL
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDG 701
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
++ +++KG P+ T L++A + ++ EAQ Q + + +P
Sbjct: 702 FGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPN 761
Query: 156 VRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSG 189
+ M+N +M KQG P+ T+ ++I + K+G
Sbjct: 762 AMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAG 811
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 51/228 (22%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
+K MK L + + +I+ F K G +D A ++ + Q V+ Y S+
Sbjct: 607 YKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDG 666
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
++ F G + ++ L++ + G++ EA L+EL KG
Sbjct: 667 LAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLT-- 724
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG---LC-ADVNTNKISIPAVSKEF 211
P+ T+N L++ + K+ E+ +C ++ K S A++
Sbjct: 725 -----------------PNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSI 767
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
MI+ LC + +F+ AF F+ EMQ + PN Y
Sbjct: 768 MING----LC-----------MIRKFNKAFVFWQEMQKQGLKPNNITY 800
>gi|341605761|gb|AEK82983.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIXLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ L + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGLAINSIFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 63/238 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S++++ F K +D A+E+ + + C VL VPDK T
Sbjct: 253 TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVL-----------------VPDKVTFN 295
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------- 172
IL+ C +G +A +E+ K P V + +++ + K G V
Sbjct: 296 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 355
Query: 173 ---PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
P++ T+N+L+ +CKSG + G D T + A+ + D+A
Sbjct: 356 GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 415
Query: 217 FRLLC--------------NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+L+ N++ DG L+ S G+ + A EM K H P+ +A
Sbjct: 416 LQLVSELKSFGWDPDTVTYNILVDG--LWKS-GKTEQAITVLEEMVGKGHQPDSFTFA 470
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 45/158 (28%)
Query: 55 MKPDSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112
++ SL V P T+ S +I+ K G ID A VF+ M
Sbjct: 170 LRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD----------------------M 207
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
I G+VP+ T+ LVN C + KM A ++ + DKG P V +
Sbjct: 208 IAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRV 267
Query: 159 --AKQMVNKMIKQGS-----VPDLETFNSLIETICKSG 189
A ++++ M +G VPD TFN LI CK+G
Sbjct: 268 DEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAG 305
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 44/192 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M R G P T+ ++N C S + E +EL ++G +P V
Sbjct: 28 MARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGD 87
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC-----------ADVNTNKIS- 203
A+++ M +G VP++ T++ LI +CK G + DV N I+
Sbjct: 88 LEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 147
Query: 204 ---IPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSEM 247
+ + K+ M EA L+ +L + ++ P GQ D+A F +M
Sbjct: 148 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDM 207
Query: 248 QIKTHPPNRPVY 259
+ PN Y
Sbjct: 208 IAGGYVPNVITY 219
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 87/239 (36%), Gaps = 71/239 (29%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC--VLLYNSL-----------HVC-FVR 111
T S++I K G ID A E+ + T +C ++ YNS C +R
Sbjct: 109 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 168
Query: 112 MIRKGFV---PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
+R G + PD T + L++ C G++ EA ++ G+ P V
Sbjct: 169 SLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCK 228
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A M+ M+ +G PD+ T++ L++ CK+
Sbjct: 229 ADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR---------------------- 266
Query: 213 IDEAFRLLCNLVEDG---HKLFPS-------------LGQFDDAFCFFSEMQIKTHPPN 255
+DEA LL + G + L P G F+ A F EM K P+
Sbjct: 267 VDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 325
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 31/164 (18%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK- 115
+L V P T + ++ K G I+ A + + + C + Y SL R R
Sbjct: 354 NLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 413
Query: 116 ------------GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
G+ PD T+ ILV+ SGK +A L+E+ KG P
Sbjct: 414 DALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACF 473
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ +++ ++ +G +PD T +S+++ +C+SG+L
Sbjct: 474 SGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKL 517
>gi|399107196|gb|AFP20362.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + B+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMTLFKRME 186
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 63/231 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S +I + G ++ A+EVF M+ G P+K T+T
Sbjct: 225 TFSTLIHGLCRTGELEKALEVFGS----------------------MLEAGCKPNKYTYT 262
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------- 172
L+ C + K+ +A+E ++++ P + ++ K+GS+
Sbjct: 263 TLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGG 322
Query: 173 ----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
P + TFN+LI+ CK G+L GL AD T +I I +S+ +DE
Sbjct: 323 AGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDE 382
Query: 216 AFRLLCNLVEDGHKLFP-----------SLGQFDDAFCFFSEMQIKTHPPN 255
A + + E L P G D A+ F + PN
Sbjct: 383 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPN 433
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 56/247 (22%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRK 115
+++ K G++ A+EVF + +C ++ YN L C F M R+
Sbjct: 15 FVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKRE 74
Query: 116 GFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ----- 169
V PD+ T+ L++ CSSG A++ L E+ DK V + ++ ++K+
Sbjct: 75 KRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEE 134
Query: 170 -----------GSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIP 205
G PD+ FN +++ +S E G D + I I
Sbjct: 135 SYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIH 194
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTH 252
++K +DE+ ++L + P++ G+ + A F M
Sbjct: 195 GLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGC 254
Query: 253 PPNRPVY 259
PN+ Y
Sbjct: 255 KPNKYTY 261
>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 52/246 (21%)
Query: 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF----NCQQCVLLYNSL---------HVC 108
V S ++ + K G+I++++ VF + + + Q C +L NSL
Sbjct: 131 VLSHVFSWLMIFYAKSGMINDSIAVFEQIMSCGLKPHLQACTVLLNSLVKERLTDTVWKI 190
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
F +M++ G V + + +LV+A SG +A++ L E+ +KG P + + ++
Sbjct: 191 FKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLISVYCK 250
Query: 164 -----------NKMIKQGSVPDLETFNSLIETICKSGELG------------LCADVNTN 200
++M + G PD+ T+NSLI + G + + A+ T
Sbjct: 251 KSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREATRLFRKIKGVVMANHVTY 310
Query: 201 KISIPAVSKEFMIDEAFRL--------LCNLVEDGHKLFPSL---GQFDDAFCFFSEMQI 249
I + IDEA RL C V + + L G+ +A +EM +
Sbjct: 311 TTLIDGYCRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSV 370
Query: 250 KTHPPN 255
K P+
Sbjct: 371 KKIEPD 376
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 30/155 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM--------IR--- 114
T + +I F + G + A +F K V Y +L + RM +R
Sbjct: 275 TYNSLIHGFSREGRMREATRLFRKIKGVVMANHVT-YTTLIDGYCRMNDIDEALRLREVM 333
Query: 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+GF P T+ ++ C G++REA L E+S K P +
Sbjct: 334 ESRGFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPDNITCNTLINAYCKIEDM 393
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
SA ++ KMI+ G D+ ++ +LI CK EL
Sbjct: 394 VSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLEL 428
>gi|302757523|ref|XP_002962185.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
gi|300170844|gb|EFJ37445.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
Length = 442
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 29/124 (23%)
Query: 97 QCVLLYNSL-------H------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
QCV+ Y ++ H CF RM+ + PD RT T+++ C +GK+ A E
Sbjct: 7 QCVVAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEV 66
Query: 144 LQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
QE++ KG+ P + A++++ +++ +G P T+ S I +CK
Sbjct: 67 FQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCK 126
Query: 188 SGEL 191
+G +
Sbjct: 127 NGRV 130
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------P 155
F M+++G+VPD RT+ ++V+ +C GKM+ A + ++ + G
Sbjct: 204 FEAMVQQGYVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLG 263
Query: 156 VRSAKQMVN---KMIKQGSVPDLETFNSLIETICKSGEL--------------GLCADVN 198
V A++ +N M+++ +P + T+N L+ +CK G+ G+ +
Sbjct: 264 VNRAREAINVYDTMLRKMVMPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIV 323
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ + I + K DEA + +V++G
Sbjct: 324 SYRTLIHGLGKAGRADEAIDVFTEMVDNG 352
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 30/194 (15%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------R 111
+T +I+ F K G + A +V A + +YNSL F+
Sbjct: 217 RTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAINVYDT 276
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK-GFNPPVRSAKQMVNKMIKQG 170
M+RK +P T+ IL+ C G+ +A+ L+E+ ++ G P + S + +++ + K G
Sbjct: 277 MLRKMVMPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAG 336
Query: 171 SVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+ ++ F +++ G+ D + I A++ +DEA +LL ++
Sbjct: 337 RADEAIDVFTEMVDN-------GVVPDCPSCTSLIQALAMADRMDEATQLLRDM------ 383
Query: 230 LFPSLGQFDDAFCF 243
P +G DA +
Sbjct: 384 --PRMGITPDALAY 395
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 61/188 (32%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T +++I K G ++ A EVF + + +++Y SL
Sbjct: 45 RTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQE 104
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD---------------------- 149
++ +G P + T+T ++ C +G++ EA + ++E+
Sbjct: 105 IVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKMCAAEVLHCIFGGYVLEGKIEE 164
Query: 150 ----------KGFNPPVR----------------SAKQMVNKMIKQGSVPDLETFNSLIE 183
KG VR A++M M++QG VPD T+ ++
Sbjct: 165 ALALKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYGMIVS 224
Query: 184 TICKSGEL 191
CK G++
Sbjct: 225 HFCKQGKM 232
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
R G VP ++ L++ +G+ EA + E+ D G P S
Sbjct: 315 RDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMD 374
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A Q++ M + G PD +N+L++ +C ++G DV
Sbjct: 375 EATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGPAWDV 414
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 33/194 (17%)
Query: 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
+ Q L+ E F +D+ FN F CQ L+Y + + +M+ G VPD
Sbjct: 346 WEQAEELLAEMFDNDCPLDDVT--FNILVDFFCQN-GLVYRVIEL-LEQMLEHGCVPDVI 401
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T+T ++N +C G + EA L+ ++ G P S A+ ++++M
Sbjct: 402 TYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQM 461
Query: 167 IKQGSVPDLETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMI 213
I+QG P+ TFN++I +CK G EL G D+ + I + K
Sbjct: 462 IEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKT 521
Query: 214 DEAFRLLCNLVEDG 227
DEA LL +V G
Sbjct: 522 DEALELLNVMVNKG 535
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 64 PQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----------- 108
P T+ S I K G I+ +++F+ + +LYN++ +C
Sbjct: 538 PNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEF 597
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
M+ G +P++ T+TIL+ S G ++EAQE L EL KG
Sbjct: 598 LAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 640
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 51/193 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123
P T + +I K GL++ A+E+ + M+ G PD +
Sbjct: 470 PVTFNTVINFLCKKGLVEQAIELLKQ----------------------MLLNGCSPDLIS 507
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
++ +++ +GK EA E L + +KG +P + + + K+G +
Sbjct: 508 YSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQ 567
Query: 173 -----PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
D +N++I ++CK G G + +T I I ++ E +
Sbjct: 568 DVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVK 627
Query: 215 EAFRLLCNLVEDG 227
EA +L L G
Sbjct: 628 EAQEMLTELCSKG 640
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I ++GL + +V + C + +Y ++ H RM
Sbjct: 262 TFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRM 321
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-------LSDKGF---------NPPV 156
G P+ + ++ CS+ + +A+E L E L D F N V
Sbjct: 322 PSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLV 381
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+++ +M++ G VPD+ T+ ++I CK G
Sbjct: 382 YRVIELLEQMLEHGCVPDVITYTTVINGFCKEG 414
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 30/143 (20%)
Query: 76 KHGLIDNAVEVFNKC-TAFNCQQCVLLYNSL--HVCFVR-----------MIRKGFVPDK 121
+ G +D A+ + T+F C V+ YN++ +C + M+R G P+
Sbjct: 201 QGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNV 260
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNK 165
T L+ C +G + L ++ D G P +R A +++++
Sbjct: 261 VTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDR 320
Query: 166 MIKQGSVPDLETFNSLIETICKS 188
M G P++ +N++++ +C +
Sbjct: 321 MPSYGLKPNVVCYNTVLKGLCSA 343
>gi|255580733|ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529229|gb|EEF31203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 619
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+++GF + HT+L+ A+C+ GK+ +A + E+ G P
Sbjct: 330 MLKRGFNANSFVHTVLIGAYCNGGKIEKANQLFGEMGTMGLEPYDETFNFLIEGCAKAGR 389
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
V KMI++G VP L FN +I +C++GE+ G D T
Sbjct: 390 VEECLSYFEKMIERGLVPSLLAFNKMIAKLCETGEVNQANTFLTRLLDKGFSPDETTYSY 449
Query: 203 SIPAVSKEFMIDEAFRLLCNL----VEDGHKLFPSL-------GQFDDAFCFFSEMQIKT 251
+ ++ I E +L + + G +F L G+ + A + M+ ++
Sbjct: 450 LMTGYERDNQIQEVLKLYYEMEYRPLSPGLLVFTPLIRSLCHCGKLEQAEKYLRIMKGRS 509
Query: 252 HPPNRPVY 259
P++ VY
Sbjct: 510 LNPSQQVY 517
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 38/153 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M L + +T + +IE K G ++ + F K MI
Sbjct: 365 MGTMGLEPYDETFNFLIEGCAKAGRVEECLSYFEK----------------------MIE 402
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
+G VP ++ C +G++ +A FL L DKGF+P ++
Sbjct: 403 RGLVPSLLAFNKMIAKLCETGEVNQANTFLTRLLDKGFSPDETTYSYLMTGYERDNQIQE 462
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++ +M + P L F LI ++C G+L
Sbjct: 463 VLKLYYEMEYRPLSPGLLVFTPLIRSLCHCGKL 495
>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 92/243 (37%), Gaps = 71/243 (29%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
KPD T ++++ G++DNA+++FN I K
Sbjct: 296 KPDLF-----TCNILLRGLCTEGMLDNALKLFNT----------------------WISK 328
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-----------------PVRS 158
G D T+ +++ C G+ EA + L E+ +K P V
Sbjct: 329 GKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEK 388
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A Q NKM+++ PDL T N L+ +C G L G D T I
Sbjct: 389 AFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIIS 448
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTH 252
+ KE +EAF LL + E+ + L P GQ + AF F ++M K+
Sbjct: 449 GLCKEGRFEEAFDLLAEM-EEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSF 507
Query: 253 PPN 255
P+
Sbjct: 508 KPD 510
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 29/206 (14%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR- 114
KPD T ++++ G++DNA+++FN + + YN++ + R
Sbjct: 402 KPDLF-----TCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRF 456
Query: 115 -------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
G VPD+ T+ ++ +C G++ +A +F ++ +K F P + +
Sbjct: 457 EEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNI 516
Query: 162 MVNKMIKQGS-VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++ + ++G V L+ FN+ I G D T I + KE +EAF LL
Sbjct: 517 LLRGLCREGMLVKALKLFNTWISK-------GKAIDAVTYNTIISGLCKEGRFEEAFDLL 569
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSE 246
+ E KL P ++ C ++
Sbjct: 570 AEMKE--KKLGPDCYTYNAILCALAD 593
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 39/213 (18%)
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS----LHVC-----------FVRMIRKGF 117
+FG + A+ + K F+C YN+ L +C ++ G
Sbjct: 201 KFGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGL 260
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LE 176
VP + T+ +++ +C G++ +A +F ++ +K F P + + ++ + +G + + L+
Sbjct: 261 VPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALK 320
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP---- 232
FN+ I G D T I + KE +EAF LL + E KL P
Sbjct: 321 LFNTWISK-------GKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEE--KKLGPDCYT 371
Query: 233 ----------SLGQFDDAFCFFSEMQIKTHPPN 255
+ GQ + AF F ++M K+ P+
Sbjct: 372 YNAILCALADAEGQVEKAFQFRNKMVEKSFKPD 404
>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
Length = 826
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 53/259 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
MK L+V Q + II+ KHG A + C+ + YN+L
Sbjct: 298 MKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGK 357
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
IR+G P+K ++T L++A+ +G+ A E L E+S++G + +
Sbjct: 358 VREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGA 417
Query: 162 MV----------------NKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+V +KM+++G +PD +N L+ +CK G
Sbjct: 418 LVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQN 477
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAF 241
+ D N + + +DEA +L +E G K + G +DA
Sbjct: 478 VTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDAL 537
Query: 242 CFFSEMQIKTHPPNRPVYA 260
F M H P+ Y+
Sbjct: 538 LCFKRMFNGVHSPDEFTYS 556
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 42/207 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T+ ++ + K G ++ + K C ++ YN+L ++ F +
Sbjct: 204 TVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKEL 263
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
KGF+P +T+ ++NA+C GK + L E+ ++G FN + +
Sbjct: 264 KVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKHGCE 323
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG---------ELGLCADVNTNKIS---- 203
A V MI+ G PD+ T+N+LI C G E + + NK S
Sbjct: 324 IEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSYTPL 383
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL 230
I A SK A LL + E GH L
Sbjct: 384 IHAFSKNGEYVRASELLIEMSERGHTL 410
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 34/186 (18%)
Query: 40 LTLISELSMWKTIE----LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT-AFN 94
L L++ ++K IE MK L + LS +I + GL+ A+E++N N
Sbjct: 103 LKLLARFRVFKEIENLLETMKSKELIPTCEALSFVISAYAGSGLVKEALELYNTVIDVHN 162
Query: 95 CQQCVLLYNSL-----HVCFVRMIRKGFVP--------DKRTHTILVNAWCSSGKMREAQ 141
C V NSL H V + RK + D T I+ C GK+ E +
Sbjct: 163 CVPDVFACNSLLNLLVHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGR 222
Query: 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETI 185
+++ KG P + +++ K G + P ++T+ ++I
Sbjct: 223 HLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAF 282
Query: 186 CKSGEL 191
CK G+
Sbjct: 283 CKKGKF 288
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 32/135 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFN------------KCTAFNCQQCVL-LYNSLHVCFVRMIRKG 116
+++ F +HG +D A ++F +C A C + N +CF RM
Sbjct: 488 LVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGV 547
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
PD+ T++ +++ + +R A +M M+K+ P++
Sbjct: 548 HSPDEFTYSTIIDGYVKQNDLR-------------------GALRMFGLMLKKTCKPNVV 588
Query: 177 TFNSLIETICKSGEL 191
TF SLI C++G+L
Sbjct: 589 TFTSLINGFCRNGDL 603
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M++K P+ T T L+N +C +G + A++ +E+ GF P V + ++ K
Sbjct: 575 FGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCK 634
Query: 169 QGS----------------VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
+G +P+ TFN L+ + + + + + + ++ P ++ EF
Sbjct: 635 EGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQ---PNLTLEF 690
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 28/156 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------------CFVRM 112
T ++++ K G +D AVEV + NC+ +Y+ L H F+ M
Sbjct: 218 TYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEM 277
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+KG D + L+ A+C K + L+E+ G P R+ +++ MI QG
Sbjct: 278 AKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQT 337
Query: 173 ---------------PDLETFNSLIETICKSGELGL 193
PD +T+ +I+ C+ EL +
Sbjct: 338 DRAFRVFCRMIKLCEPDADTYTMMIKMFCEKNELEM 373
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+W + M+ + + +T +++ ++ + +D AV FN ++ + +N L
Sbjct: 97 VWDLVSAMRKKGM-LNVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLS 155
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C +RK FVPD+++++IL+ W + + A+E +E+ + G +P
Sbjct: 156 ALCKSNNVRKAQEIFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPD 215
Query: 156 VRSAKQMVNKMIKQGSVPD 174
V + MV+ + K G V +
Sbjct: 216 VVTYGIMVDVLCKAGRVDE 234
>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 88/241 (36%), Gaps = 40/241 (16%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+W +E M+ L + T LI+ + + + AVE F K F + + YN L
Sbjct: 198 VWSLVEAMRCRGL-LSKDTFRLIVRRYARARKVKEAVETFEKMAGFGLKADLSDYNWLID 256
Query: 106 -----------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H F M R G FVPD +T+T+L+ W + + QE+ D G
Sbjct: 257 VLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQ 316
Query: 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
P V + +++ K G + ++ F + C C +N + E
Sbjct: 317 PDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLIN-------GLGSEER 369
Query: 213 IDEAFRLL--------------CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
+DEA + CN V + +F AF EM+ PN
Sbjct: 370 LDEALKYFELSKASGFPMEVPTCNAVVGA---YCRSSKFQHAFKMVDEMRKSGIGPNSRT 426
Query: 259 Y 259
Y
Sbjct: 427 Y 427
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K ++ M+ + +T +I+ K I+ A VF + C+ + Y +
Sbjct: 409 FKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGM 468
Query: 109 FV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F +M KG +P + L+N C ++ EA + QE+ D+G PP
Sbjct: 469 FCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRPP 528
Query: 156 VRSAKQMVNKMIKQGSV 172
+ + +I+ G +
Sbjct: 529 GQLFSNLKEALIEGGRI 545
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 32/238 (13%)
Query: 48 MWKTIELMKPDSLSVFPQT-LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MWKTI+ M S V LS I++ GK +++ A+ VF + C+ YNS+
Sbjct: 146 MWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMI 205
Query: 106 ------------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
H + M G PD T++ L++A+ G A E+ + G
Sbjct: 206 LMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGL 265
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
P + ++ K L+ ++ I + + G V T I + K
Sbjct: 266 YPTAKIYTTLLGIYFK------LDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGR 319
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+D+A+R+ ++++DG K + +G+ + F +M+ PN Y
Sbjct: 320 VDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTY 377
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS----LHVC----------FVRMIRK 115
+I GK G ++ +++F K ++ C+ V+ YN+ L C F +M
Sbjct: 345 LINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGC 404
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G P T++IL++ +C + ++ +A L+E+ +KGF P + ++N + G V
Sbjct: 405 GIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSL---GKVKRY 461
Query: 176 ETFNSL 181
E N L
Sbjct: 462 EAANEL 467
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 25/125 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+ +++I+ FGK G + AV++FN+ + V YN+L VR
Sbjct: 481 RVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVR------------- 527
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD--LETFNSLI 182
+G + EAQ L+ + + G +P + S ++N + + G VPD +E F +
Sbjct: 528 ---------AGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTG-VPDRAIEMFAKMK 577
Query: 183 ETICK 187
+I K
Sbjct: 578 SSIIK 582
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 57/251 (22%)
Query: 42 LISELSMWKTIELM--KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV 99
L S + M++ +++ +PD T ++ GK G + A F+ +
Sbjct: 116 LDSAMEMFREMKIKGSEPDEY-----TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNI 170
Query: 100 LLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
YN L F + M R+GF P T+ IL++A CS+G++ A++ +
Sbjct: 171 PTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHK 230
Query: 147 LSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
++ G +P V A ++ +M+ +G DL +NSL+ T+ K+G
Sbjct: 231 MTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGN 290
Query: 191 L-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-------- 229
+ G D + + A+ K D A + +VE G K
Sbjct: 291 MDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNI 350
Query: 230 LFPSLGQFDDA 240
L S +F DA
Sbjct: 351 LIDSYARFGDA 361
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFV 110
P TL +I +G+ +A ++FN+ +F C V + L + +
Sbjct: 30 PNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYK 89
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++++KG D+ + +L+ + SG++ A E +E+ KG P + +VN + K G
Sbjct: 90 KLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAG 149
Query: 171 SVPDLET-FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
V + + F++++E GL ++ T + + A K +D A L + G +
Sbjct: 150 RVQEARSFFDAMLER-------GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQ 202
Query: 230 LFPSLGQFD---DAFC 242
PS+ ++ DA C
Sbjct: 203 --PSVVTYNILLDALC 216
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 62/228 (27%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
+++I FG+ G +D+A+E+F + M KG PD+ T+ L
Sbjct: 104 NVLIRYFGRSGQLDSAMEMFRE----------------------MKIKGSEPDEYTYGFL 141
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPV----------RSAKQ------MVNKMIKQGS 171
VNA +G+++EA+ F + ++G P + R Q + +M ++G
Sbjct: 142 VNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGF 201
Query: 172 VPDLETFNSLIETICKSGELGLC-------------ADVNTNKISIPAVSKEFMIDEAFR 218
P + T+N L++ +C +G +G D T + + K ++EA +
Sbjct: 202 QPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHK 261
Query: 219 LLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPN 255
+ +V+ G + L +L G D + EM K P+
Sbjct: 262 VFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPD 309
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 62/251 (24%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K M D S T S ++ GK G ++ A +VF + ++ YNSL
Sbjct: 226 KLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATL 285
Query: 110 VR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ M RKGF PD + +++A + K A+E + + G P +
Sbjct: 286 AKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDL 345
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
S A+QM+ +M++ G +P+ +T+NSLI + G+
Sbjct: 346 ISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQ---------- 395
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSLGQFDD---AFCFFSEMQI 249
+DEAF +L + G ++L LG+ + A F +M+
Sbjct: 396 ------------VDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKD 443
Query: 250 KTHPPNRPVYA 260
K P+ YA
Sbjct: 444 KGVEPDTLSYA 454
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 41/174 (23%)
Query: 36 NRLNLTLISELSMWKTIELMKPDSLSVF-PQTLSL--IIEEFGKHGLIDNAVEVFNKCTA 92
N L TL +M + +LMK S F P S I++ GK D A EVF
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVF----- 333
Query: 93 FNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
RM+ G PD ++ IL++++ G +A++ L+E+ + GF
Sbjct: 334 -----------------ARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF 376
Query: 153 NPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGE 190
P ++ +++ + G V PD+ T+N L++ + K GE
Sbjct: 377 IPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGE 430
>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 61/271 (22%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN---KCTAFN--------- 94
S W ++++ + +I F G + A+EVF+ KC
Sbjct: 266 SAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILV 325
Query: 95 ---CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
C+Q +L + + V M R G P+ +++ L++ C +G++ A E + L D+G
Sbjct: 326 DGLCKQGDVL--TGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQG 383
Query: 152 F----------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL---- 191
F + + + N M+ VPD ++SLI C+ +L
Sbjct: 384 FKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEAL 443
Query: 192 ---------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF----- 237
G+C +V T I + S E +I EAF L + + G + PSL +
Sbjct: 444 EVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFG--VVPSLCTYRVIIH 501
Query: 238 --------DDAFCFFSEMQIKTHPPNRPVYA 260
+D + F++M + + P+ +Y+
Sbjct: 502 GLCKVNKPNDMWGIFADMIKRGYVPDTVLYS 532
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 44/232 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-----CQQCVLLY-- 102
+ ELM D + T ++++ F GLI A +K F C V+++
Sbjct: 444 EVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGL 503
Query: 103 ------NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
N + F MI++G+VPD ++I+++ + + ++EA ++ D+G P +
Sbjct: 504 CKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNI 563
Query: 157 RSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGEL--------- 191
+ ++N MI +G PD + SLI CK +
Sbjct: 564 FTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFRE 623
Query: 192 ----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDD 239
GL AD I SK +D A + ++ G L P++ + D
Sbjct: 624 METEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKG--LTPTVVTYTD 673
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 36/183 (19%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSG 135
KH I ++ + C + + C L+N M+ FVPD ++ L+ A+C
Sbjct: 385 KHDHIVYSIVLHGCCQHLDLEICYDLWND-------MVHHNFVPDAYNYSSLIYAYCRHR 437
Query: 136 KMREAQEFLQELSDKGFNPPVRSAKQMV----------------NKMIKQGSVPDLETFN 179
+++EA E + + G P V + +V +K+ + G VP L T+
Sbjct: 438 QLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYR 497
Query: 180 SLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+I +CK + G D I I K + EAFRL +V++
Sbjct: 498 VIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDE 557
Query: 227 GHK 229
G K
Sbjct: 558 GTK 560
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRS 158
+G P+ T+ + C + +++ A FLQ L +G+ + V
Sbjct: 242 EGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHK 301
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ + M K G VPD+ +++ L++ +CK G++
Sbjct: 302 AIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDV 334
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 60/232 (25%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIR 114
S++I+ K G D+A+ +FN+ + V+ Y+SL +C MI
Sbjct: 278 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 337
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+ +PD T + L++ + GK+ E AK++ N+MI +G PD
Sbjct: 338 RNIIPDVVTFSALIDVFVKEGKLLE-------------------AKELYNEMITRGIAPD 378
Query: 175 LETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
T+NSLI+ CK L G D+ T I I + K +D+ RL
Sbjct: 379 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 438
Query: 222 NLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ G L P+ G+ + A F EM + PP+ Y
Sbjct: 439 EISSKG--LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 488
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--------- 109
+ P T++ +I+ F K + A ++F+ + C+ ++ Y+ L +
Sbjct: 374 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 433
Query: 110 VRMIR----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+R+ R KG +P+ T+ LV +C SGK+ A+E QE+ +G P V + +++
Sbjct: 434 MRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 493
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ G + N +E K + + + I I + +D+A+ L C+L +
Sbjct: 494 LCDNGEL------NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 547
Query: 226 DGHK 229
G K
Sbjct: 548 KGVK 551
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 35/170 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
R + G+ PD T + LVN +C G++ EA + + + P + + ++N
Sbjct: 159 RAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKG 218
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGELGLCADV----NTNKISIPAVSKE 210
+M++ G PD T+ ++ +CKSG L D+ I V
Sbjct: 219 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYS 278
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID +L +D G FDDA F+EM++K + Y+
Sbjct: 279 IVID-------SLCKD--------GSFDDALSLFNEMEMKGIKADVVTYS 313
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S +I+ F K G + A E++N+ MI +G PD T+
Sbjct: 346 TFSALIDVFVKEGKLLEAKELYNE----------------------MITRGIAPDTITYN 383
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK----------------Q 169
L++ +C + EA + + KG P + + ++N K +
Sbjct: 384 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 443
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G +P+ T+N+L+ C+SG+L
Sbjct: 444 GLIPNTITYNTLVLGFCQSGKL 465
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ GF PD+ T+ ++N C SG A + +++ ++ V +++ + K G
Sbjct: 229 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 288
Query: 171 SVPD-LETFNSLIETICKSGEL-GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
S D L FN + E+ G+ ADV T I + + D+ ++L ++ G
Sbjct: 289 SFDDALSLFNEM--------EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI--GR 338
Query: 229 KLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ P + G+ +A ++EM + P+ Y
Sbjct: 339 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 382
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 78/229 (34%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S++I + K +D+ + +F + ++ + YN+L + F + M
Sbjct: 416 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 475
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-------------------------- 146
+ +G P T+ IL++ C +G++ +A E ++
Sbjct: 476 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 535
Query: 147 ---------LSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSL 181
LSDKG P V + M+ + K+GS+ PD T+N L
Sbjct: 536 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 595
Query: 182 IET------ICKSGEL-------GLCADVNTNKISIPAVSKEFMIDEAF 217
I + S EL G AD +T K+ I +S +D++F
Sbjct: 596 IRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDR-RLDKSF 643
>gi|341605745|gb|AEK82975.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRXN--GFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------- 155
+V +++M+ G PD T+T L++A C G++REA++ + G P
Sbjct: 532 YVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHA 591
Query: 156 ------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
+ SA KM+++G P+ T+N LI +C+ G E GL +
Sbjct: 592 YCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPN 651
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250
T + I KE +EA RL + + H + P + F F E Q K
Sbjct: 652 KYTYTLLIDGNCKEGNWEEAIRLYSEMHQ--HGIHPDHCTHNALFKGFDEGQSK 703
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 51/212 (24%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A N ++ + L+ L R G P T+ IL++ +C G + EA+ F QE+ +
Sbjct: 383 CKAGNLKEALWLFGDLK-------RAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVE 435
Query: 150 KGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLI--ETICKSG-- 189
+G P V + ++ ++M+ +G PD +N+ I E I S
Sbjct: 436 QGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSE 495
Query: 190 ---------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------ 234
G+ +D T I + + K + +A+ L +V DG L P
Sbjct: 496 AFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDG--LQPDCITYTCL 553
Query: 235 -------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ +A F M + PP+ Y
Sbjct: 554 IHAHCERGRLREARDIFDGMLVSGLPPSAVTY 585
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
FV M G +PD T+ L+N +C +G ++EA +L G P V
Sbjct: 360 FVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCR 419
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLI 182
A++ +M++QG PD+ T+ L+
Sbjct: 420 LGDLEEARRFKQEMVEQGCQPDVSTYTILM 449
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 49/208 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTA--FNCQQCVLLYNSLHVCFVRMIRKG------- 116
T + +++ F + G +D A ++ + A C + YN V + RKG
Sbjct: 233 TYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYN---VVINGLARKGELEKAAQ 289
Query: 117 FVPDKR--------THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
V R T L+ + + G + +A E+ ++G P V + +++ M +
Sbjct: 290 LVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFR 349
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL-------------GLCADVNT 199
G+V PDL T+NSLI CK+G L GL V T
Sbjct: 350 SGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLT 409
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I + + ++EA R +VE G
Sbjct: 410 YNILLDGYCRLGDLEEARRFKQEMVEQG 437
>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 452
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 51/246 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------- 106
+KPD T +++++ K G + A V + V+ YNSL
Sbjct: 185 IKPD-----IYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQ 239
Query: 107 -----VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
F M R+G PD ++++++N C + + EA L+E+ K P
Sbjct: 240 ENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSS 299
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ A +VN+M +G D+ T+NSL++ +CK+ ++ G
Sbjct: 300 LIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQG 359
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
+ D+ T I + + K + +A + L+ G+ L SL FD A S+M+
Sbjct: 360 IQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHL-DSL--FDKALSLLSKMEDNGC 416
Query: 253 PPNRPV 258
PN PV
Sbjct: 417 TPN-PV 421
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 66/245 (26%)
Query: 58 DSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFV---- 110
D L V P + S II K L+ +A +++++ V+ YN+L + C +
Sbjct: 111 DGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRL 170
Query: 111 --------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
+M+ K PD T ILV+ C G+M++A+ L
Sbjct: 171 KEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAV---------------- 214
Query: 163 VNKMIKQGSVPDLETFNSLIE-------------TICKSGELGLCADVNTNKISIPAVSK 209
MIKQ PD+ T+NSL++ G+ DV++ + I + K
Sbjct: 215 ---MIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCK 271
Query: 210 EFMIDEAFRLL---------------CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
M+DEA LL +L++ HK G+ DA+ +EM + P
Sbjct: 272 TKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHK----SGRIFDAWDLVNEMHNRGQPA 327
Query: 255 NRPVY 259
+ Y
Sbjct: 328 DVITY 332
>gi|255685920|gb|ACU28449.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 172
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 9 VMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRG 68
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD + TI + ++C + + A L +S +G V +
Sbjct: 69 ITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEGY 128
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
++ KM+ G L TFN L+ +CK G++ C
Sbjct: 129 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 162
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 31/162 (19%)
Query: 61 SVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
+V P T++ ++++ K G++ A V T + YN+L +
Sbjct: 301 NVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEA 360
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------- 156
MI KG P+ ++ IL+N +C S +M EA+ L E+S+K P
Sbjct: 361 IKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQG 420
Query: 157 -------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
R A + +M G +PDL ++ L++ CK G L
Sbjct: 421 LCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHL 462
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 82/215 (38%), Gaps = 64/215 (29%)
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILV 128
+AV + N+ F V N L C R M + G PD T L+
Sbjct: 114 SAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLI 173
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---------------- 172
N C+ GK++EA E+ G P V S ++N + K G+
Sbjct: 174 NGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGK 233
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG----- 227
P++ T+N++I+++C K+ +++EA L +V+ G
Sbjct: 234 PNVVTYNTIIDSLC----------------------KDRLVNEAVEFLSEMVDRGIPPDV 271
Query: 228 -------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
H F SLGQ ++A F EM + P+
Sbjct: 272 VTYNTILHG-FCSLGQLNEATRLFKEMVGRNVMPD 305
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 124/296 (41%), Gaps = 67/296 (22%)
Query: 25 VRHDIYAERTL----NRLNLTLISELSMWKTIEL-MKPDSLSVFPQTLSLIIEEFGKHGL 79
V H++Y+ L RL+ + M K +L ++PD++ T + +I G
Sbjct: 127 VTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAI-----TFNTLINGLCNEGK 181
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL---------HVCFVRMIRK----GFVPDKRTHTI 126
I AV +FN+ + V+ YN++ + VR+ RK P+ T+
Sbjct: 182 IKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNT 241
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQG 170
++++ C + EA EFL E+ D+G P V A ++ +M+ +
Sbjct: 242 IIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRN 301
Query: 171 SVPDLETFNSLIETICKSG---ELGLCADVNTNKISIP------AVSKEF----MIDEAF 217
+PD TFN L++ +CK G E ++ T K + P A+ + +DEA
Sbjct: 302 VMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAI 361
Query: 218 RLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVYA 260
++L ++ G P+L ++ + +C SEM K P+ Y+
Sbjct: 362 KVLGIMI--GKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYS 415
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 57/250 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LH-VC-----------FVRM 112
T + II+ K L++ AVE ++ V+ YN+ LH C F M
Sbjct: 238 TYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM 297
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ + +PD T ILV+ C G + EA+ + +++KG P +
Sbjct: 298 VGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQM 357
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKEFM 212
A +++ MI +G P+L ++N LI CKS + L ++++ ++ V+ +
Sbjct: 358 DEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTL 417
Query: 213 ID---------EAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
+ EA L + G L P L G D+A EM +
Sbjct: 418 MQGLCQVGRPREALNLFKEMCSSG--LLPDLMAYSILLDGFCKHGHLDEALKLLKEMHER 475
Query: 251 THPPNRPVYA 260
PN +Y
Sbjct: 476 RIKPNIILYT 485
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +++ + H +D A++V C + YN L + + M
Sbjct: 343 TYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM 402
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
K PD T++ L+ C G+ REA +E+ G P + + +++ K G +
Sbjct: 403 SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHL 462
Query: 173 ----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
P++ + LI + +G+L G+ D+ T +
Sbjct: 463 DEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVM 522
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I + KE + DEA+ + +DG
Sbjct: 523 IKGLLKEGLSDEAYEFFRKMEDDG 546
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 29/145 (20%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY----------NSLHVC---FVRMIR 114
S++++ F KHG +D A+++ + + ++LY L V F ++
Sbjct: 450 SILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSA 509
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRS 158
G PD T+ +++ G EA EF +++ D GF N +
Sbjct: 510 DGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSST 569
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIE 183
A Q++++M+ + D TF L++
Sbjct: 570 AIQLIDEMVGKRFSADSSTFQMLLD 594
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 100/255 (39%), Gaps = 57/255 (22%)
Query: 26 RHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVE 85
+HD Y T+ + +++ K ++ M D T + +I +G+ +++AVE
Sbjct: 335 KHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVE 394
Query: 86 VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
VFN+ M + G PD+ T+ L++ +G + A E Q
Sbjct: 395 VFNQ----------------------MQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQ 432
Query: 146 ELSDKGFNPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKS- 188
+ G +P + M+N +MI+QG VP+L T+N +I K+
Sbjct: 433 RMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKAR 492
Query: 189 ---GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFS 245
L L D+ V+ +++ GH G D+A FS
Sbjct: 493 NYQNALKLYRDMQNAGFEPDKVTYSIVMEVL----------GHS-----GYLDEAEAIFS 537
Query: 246 EMQIKTHPPNRPVYA 260
EM+ K P+ PVY
Sbjct: 538 EMKRKNWVPDEPVYG 552
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S+++E G G +D A +F++ M RK +VPD+ +
Sbjct: 515 TYSIVMEVLGHSGYLDEAEAIFSE----------------------MKRKNWVPDEPVYG 552
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+LV+ W +G + +A E+ Q + G P V + +++ ++ +PD
Sbjct: 553 LLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPD 601
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 36/228 (15%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC---- 108
+ M+ LS T S++I GK G + A ++F + C ++ YN +
Sbjct: 432 QRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKA 491
Query: 109 ---------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
+ M GF PDK T++I++ SG + EA+ E+ K + P
Sbjct: 492 RNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVY 551
Query: 160 KQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
+V+ K G+V E + +++ GLC +V T + A + + +A+
Sbjct: 552 GLLVDLWGKAGNVEKAWEWYQAMLHA-------GLCPNVPTCNSLLSAFLRVNRLPDAYN 604
Query: 219 LLCNLVEDGHKLFPSLGQFD-------------DAFCFFSEMQIKTHP 253
LL +++ G L PSL + D C+ M + HP
Sbjct: 605 LLQSMLNLG--LNPSLQTYTLLLSCCTEARSPYDMGCYCELMSVTGHP 650
>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 482
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 34/157 (21%)
Query: 48 MWKTIE-LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
MW I +MK L+V +T +++ ++ + +D A+ FN ++ ++ +N L
Sbjct: 118 MWDLINAMMKKKMLNV--ETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLL 175
Query: 106 -HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C + +RK F PD +T++IL+ W G P
Sbjct: 176 SALCKSKNVRKAQEIFENMRDRFTPDSKTYSILLEGW-------------------GKEP 216
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A+++ +M+ GS+PD+ T++ +++ +CK+G +
Sbjct: 217 NLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRV 253
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 28/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------------CFVRM 112
T S++++ K G +D A+ + C+ +Y+ L H F+ M
Sbjct: 239 TYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEEAVDTFLEM 298
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G D L+ A+C + +M+ L+E+ KG P +S ++ +I +G
Sbjct: 299 ERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIDRGEK 358
Query: 173 ---------------PDLETFNSLIETICKSGEL 191
PD +T+ +I+ C+ E+
Sbjct: 359 DEAFDVFRKMIKVCEPDADTYTMMIKMFCEKKEM 392
>gi|224576643|gb|ACN56995.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ G + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRXN--GXAINSXFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 154
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 44/188 (23%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS--- 158
F M G VPD +TIL+N +C +G M EA E ++ ++G +N +
Sbjct: 348 FRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCK 407
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-------------LCADVNT 199
A + ++M+++G VPD TF +LI CK G +G + D+ T
Sbjct: 408 KKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVT 467
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP-------------SLGQFDDAFCFFSE 246
I I K +++A L ++ K+FP +LG +AF + E
Sbjct: 468 YNILIDGFCKTTEMEKANELWNEMIS--RKIFPNHISYAILVNGYCNLGFVSEAFRLWDE 525
Query: 247 MQIKTHPP 254
M K P
Sbjct: 526 MIRKGIKP 533
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 40/214 (18%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKR 122
K G +D A EV+N+ + V N + +C + M +KG D
Sbjct: 162 KMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIV 221
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T+ L+NA+C G + EA E + +S KG P + + AK + N+M
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+ G PD T+N+L+ C++ D+ ++ + VS + + +F L +
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLH-RGVSPDLI---SFSSLIGVSSR 337
Query: 227 GHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G D A +F +M+ P+ +Y
Sbjct: 338 N-------GHLDQALMYFRDMKTSGLVPDNVIYT 364
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I K G + A+ +F T N + ++ YN L F + M
Sbjct: 432 TFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEM 491
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------RS--- 158
I + P+ ++ ILVN +C+ G + EA E+ KG P + RS
Sbjct: 492 ISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDL 551
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A + + KMI +G PD T+N+LI K + GL DV T +
Sbjct: 552 SKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVI 611
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
+ ++ + EA +L ++E G
Sbjct: 612 LNGFCRQGRMQEAELILRKMIERG 635
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 21/169 (12%)
Query: 27 HDIYAERTLNRLNLTLISE-LSMWKTI--ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNA 83
H YA NL +SE +W + + +KP + T + +I+ + + G + A
Sbjct: 500 HISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLV-----TCNTVIKGYCRSGDLSKA 554
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNA 130
E K + + YN+L FV+ M KG PD T+ +++N
Sbjct: 555 DEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNG 614
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
+C G+M+EA+ L+++ ++G +P + ++N + Q ++ + F+
Sbjct: 615 FCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFH 663
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR- 111
E + PDS+ T + +I F K +D A + NK Q V+ YN + F R
Sbjct: 564 EGVGPDSI-----TYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQ 618
Query: 112 ------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
MI +G PD+ T+T L+N + S ++EA F E+ +GF P
Sbjct: 619 GRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVP 673
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 45/210 (21%)
Query: 63 FP---QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF 117
FP Q +++I +F K G I +A +FN+ + + +N+L +C R + +GF
Sbjct: 219 FPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGF 278
Query: 118 -----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------ 154
PD T+++L++ C G++ A++ E+ +G P
Sbjct: 279 RLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQ 338
Query: 155 ----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADV 197
+ SA ++M+ G PDL +N+L+ +CK G+ +G+ D
Sbjct: 339 YRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDK 398
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
T I KE ++ A + + E+G
Sbjct: 399 ITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 44/181 (24%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL- 100
L+ E+ M MKPD + T + +I+ + K G +++A+E+ N + VL
Sbjct: 385 LVDEMKMVG----MKPDKI-----TYTTLIDGYCKEGDLESAMEIRK---GMNEEGVVLD 432
Query: 101 --LYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+ +L F R M+ G PD T+T++++ +C G ++ + L+
Sbjct: 433 NVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLK 492
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSG 189
E+ G P V + ++N + KQG + PD T+N L+E CK+G
Sbjct: 493 EMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552
Query: 190 E 190
+
Sbjct: 553 K 553
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 29/157 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK-------- 115
T + +I+ + +D+A+ +++ + +++YN+L +C V + K
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
G PDK T+T L++ +C G + A E + ++++G + V
Sbjct: 390 KMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
R A++ + +M++ G PD T+ +I+ CK G + +
Sbjct: 450 RDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKM 486
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ ++ GF P + + IL+N +C G +R+A+ E+ +G P S ++N + K
Sbjct: 211 YSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCK 270
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL 191
++ PD+ T++ LI +CK G L
Sbjct: 271 SRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRL 309
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
F E+ + GF P V+ ++NK K+GS+ D + + I K G NT
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKL---IFNEIRKRGLRPTTVSFNT--- 263
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQI 249
I + K +DE FRL + E+ +++P + G+ D A F EMQ
Sbjct: 264 LINGLCKSRNLDEGFRLKKTMEEN--RIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQ 321
Query: 250 KTHPPN 255
+ PN
Sbjct: 322 RGLRPN 327
>gi|341605695|gb|AEK82950.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CQFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMMLFKRME 184
>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Brachypodium distachyon]
Length = 556
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 42/200 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ + +HG+++ A+E+ + + YN+L R M KG
Sbjct: 329 MIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKG 388
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS----- 171
P+ ++T L++ G M EA+ +++ KG P V + M++ IK GS
Sbjct: 389 VAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAE 448
Query: 172 -----------VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
VPD+ T+ L+ C +G++ G +V + +
Sbjct: 449 RFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGL 508
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
+KE +EAF+L +++ G
Sbjct: 509 AKEGRSEEAFQLYDDMLAAG 528
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 33/162 (20%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
SV P + S++++ F K G +D+A + ++ YNSL + R
Sbjct: 145 SVTPLSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAG 204
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK----------------- 150
M +G P T+TILV+ +G + + + E+ K
Sbjct: 205 LLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYC 264
Query: 151 -GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
G N VR A ++ ++ + G P+ T+ +LI CK G++
Sbjct: 265 RGGN--VRRASEVFDECVGHGVEPNERTYGALINGFCKIGQI 304
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 28 DIYAERTLNRLNLTLISEL-SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEV 86
DIY TL L ++ + K + +M ++ + + +I K G + A +
Sbjct: 357 DIYTYNTLA-CGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRL 415
Query: 87 FNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCS 133
F + V+ YN + +++ M +KG VPD T+ LV+ C
Sbjct: 416 FRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCV 475
Query: 134 SGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+GK+ A +E+ +G P V + +V+ + K+G
Sbjct: 476 NGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEG 512
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++II + G +D+A E+ N+ +++ Q ++ Y ++ V F M
Sbjct: 213 TYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEM 272
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ K VP++ T +LV +C G + A + LQ++S G P ++N + KQG V
Sbjct: 273 VDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRV 332
Query: 173 ----------------PDLETFNSLIETICKSGE 190
PD ++ +++ +C++G
Sbjct: 333 DDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 366
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 63/249 (25%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
K IELM SV T + ++ F G +D+A+E+FN C+ + Y +L +
Sbjct: 407 KLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNN---LPCEPNTITYTTLLTGL 463
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C MI+K + T +LV+ +C G + EA E
Sbjct: 464 CHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAME-------------- 509
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETI---CKSGEL----------GLCADVNTNKIS 203
+VN+M++ G P+L TFN+L++ I C S E G+ D T
Sbjct: 510 -----LVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSV 564
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIK 250
+ +S+E +EA ++L + + G + P +G + D A FF+ M
Sbjct: 565 VDVLSREDRTEEAIQMLHAVQDMGMR--PKVGMYNKILFALCKRCETDQAIDFFAYMVSN 622
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 623 GCMPNESTY 631
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+++G P T+T+L+ A C S EA L E+ KG P + + ++N M ++G
Sbjct: 167 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 226
Query: 172 V----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
V PD+ ++ ++++ +C + + + V E D
Sbjct: 227 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 286
Query: 216 AFRLLC--NLVEDGHKLFPSL----------------------GQFDDAFCFFSEMQIKT 251
R C +VE ++ + G+ DDA+ F + M +
Sbjct: 287 LVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG 346
Query: 252 HPPNRPVY 259
P+ Y
Sbjct: 347 CNPDTISY 354
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 79/220 (35%), Gaps = 53/220 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV----------P 119
+I + G +A V A V YN+L + R R P
Sbjct: 80 LIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMPVPP 139
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
D T+T ++ C G++ +A L + M+++G P + T+
Sbjct: 140 DAYTYTPIIRGLCDRGRVGDALALLDD-------------------MLQRGCQPSVVTYT 180
Query: 180 SLIETICKS---GEL----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
L+E +CKS GE G ++ T + I + +E +D+A +L L
Sbjct: 181 VLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSY 240
Query: 227 GH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPN 255
G K + ++DD F+EM K PN
Sbjct: 241 GFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPN 280
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 48/238 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
M+ D + T +++I+ F K + A++VF + + V+ YNSL +C
Sbjct: 227 MRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGK 286
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+M+ P+ TH L+N +C + +++A E ++ +G P V +
Sbjct: 287 VNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNI 346
Query: 162 MVNK----------------MIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNK 201
+++ M+ +G PD+ T+N LI +C+ G+L L ++++T
Sbjct: 347 LIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH 406
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ ++ +ID LCN G+ A EM K P++ Y
Sbjct: 407 LKADLITYNILIDS----LCN-----------KGEMKKALRLLDEMCRKGLKPSQLTY 449
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 40/191 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M ++G P+ T+ IL++A+C M +A + + KG P V
Sbjct: 329 FDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCR 388
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+A+ +V++M + DL T+N LI+++C GE+ GL T
Sbjct: 389 KGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLT 448
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQ 248
I KE + A L + + G K F + +DA +EM
Sbjct: 449 YNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEML 508
Query: 249 IKTHPPNRPVY 259
K PNR Y
Sbjct: 509 EKGLIPNRMTY 519
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 45/199 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----------- 114
+ +++I K G ++ A ++ V+ YN+L + +M +
Sbjct: 165 SFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAIL 224
Query: 115 -----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
G P++ T IL++ +C + A + E++ +G P V + ++N +
Sbjct: 225 KEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNN 284
Query: 170 GSV----------------PDLETFNSLIETICK------SGEL-------GLCADVNTN 200
G V P++ T N+L+ CK +GEL G+ +V T
Sbjct: 285 GKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344
Query: 201 KISIPAVSKEFMIDEAFRL 219
I I A K+ +++AF L
Sbjct: 345 NILIDAYCKDENMEDAFAL 363
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M + G + + T+ +L+ +C K+ +A L E+ +KG P + + + +M+++G
Sbjct: 471 QMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530
Query: 171 SVPDLE 176
VPD+E
Sbjct: 531 FVPDIE 536
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD--------------KGF--NPP 155
M RKG P + T+ +++ +C G +R A ++ KGF
Sbjct: 437 MCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDK 496
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A ++N+M+++G +P+ T+ + E + + G
Sbjct: 497 LEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/125 (18%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
+ + MIR+ P + I++N C GK+ +A + ++++ +G + V + +++
Sbjct: 147 MEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLID 206
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
K G + + +++++ + G+C + T I I K+ + A ++ +
Sbjct: 207 GYCKMGKIGKMYKADAILKEMRAD---GICPNEVTFNILIDGFCKDKNVSAAMKVFAEMN 263
Query: 225 EDGHK 229
G K
Sbjct: 264 RQGVK 268
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
++H+ F M+R+G P T+T L++ +C +G + EA L E+ G P + M+
Sbjct: 348 AIHI-FNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAML 406
Query: 164 N-----------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
N M K G PD+ T+ +L+ +CK G L + + + IP+ +
Sbjct: 407 NGSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKT 466
Query: 213 IDEAFRLLCN 222
++ +CN
Sbjct: 467 LNALLLGICN 476
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M+ F+PD T+TIL++ +C GK+ A LQ + +KG P + + ++ +IK+G
Sbjct: 489 KMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEG 548
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNT 199
V E ICK G C N+
Sbjct: 549 QVKAASYL--FQEIICKEGMYADCIAYNS 575
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 52/235 (22%)
Query: 61 SVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HV 107
++P LS ++I F + + +A+++FN Y+++ H
Sbjct: 670 GIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHS 729
Query: 108 CFV--RMIRKGFVPDKRTHTI-LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
C V M+ G P K TH I L+NA C G + A +E++ G P + +V
Sbjct: 730 CDVLRDMVESGLEP-KHTHYIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSIVR 788
Query: 165 KM----------------IKQGSVPDLETFNSLIETICK----SGELGLCADVNTNKISI 204
+ I+ G VP + TF +L+ +CK S L L + + + + I
Sbjct: 789 GLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKI 848
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
V+ +I ++ C DA + EM+ K PN Y
Sbjct: 849 DVVTYNVLITGLCKIQC---------------VSDALELYEEMKSKGLRPNVTTY 888
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 55/202 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T L+I KHG+I+ AV+ +K M+ +G PD+ +
Sbjct: 642 TYRLLILGLSKHGMIEIAVKFLDK----------------------MVLEGIYPDRLSFD 679
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ---------------- 169
+L+NA+ +M +A + + +P ++ M+N +I++
Sbjct: 680 VLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVES 739
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLC-ADVNTNKISIPAVSKEFMIDE 215
G P + +LI C+ G+ LG+ A+V + I + +SK ++E
Sbjct: 740 GLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSI-VRGLSKCGKVEE 798
Query: 216 AFRLLCNLVEDGHKLFPSLGQF 237
+ C+++ G + P++ F
Sbjct: 799 GIIVFCSIIRAG--MVPTIATF 818
>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 840
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 42/241 (17%)
Query: 29 IYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN 88
I + +T N L L MW +K T S++++ + +AV F
Sbjct: 211 IVSIQTYNSLLYNLRHSNIMWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQ 270
Query: 89 KCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSG 135
Q V+ +N++ C F M++ G +PD ++ IL++ C +G
Sbjct: 271 DTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAG 330
Query: 136 KMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETFN 179
M EA + ++ + G P + A ++ KM+ +G P+L T+
Sbjct: 331 SMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYT 390
Query: 180 SLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
LI C+ G + G + ++ + + ++ K +D AF+L C + +
Sbjct: 391 VLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEAN 450
Query: 227 G 227
G
Sbjct: 451 G 451
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV--CFVRMIRK---------- 115
+++I+ + K G AV+++ + ++ +NSL C R + +
Sbjct: 530 NIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKL 589
Query: 116 -GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
G P+ T+T L+N +C G M+ E L E+ K P ++
Sbjct: 590 HGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQE 649
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ Q++ M G PD ++N++I+ CK+ ++
Sbjct: 650 SCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDM 682
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M+ KG P+ T+T+L+ C G + EA + +E+ GF + S+ ++ + K
Sbjct: 376 KMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSR 435
Query: 171 SV----------------PDLETFNSLIETICKSGEL 191
V PDL T+++LI +CK GE+
Sbjct: 436 QVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEV 472
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 49 WKTIE----LMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY 102
WK E L D++ + P +S II+ F K + A ++++K N + + Y
Sbjct: 645 WKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTY 704
Query: 103 NSLHVCF-------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
N L F V + + +K +T ++ A C+ G + +A + +++ +
Sbjct: 705 NILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVE 764
Query: 150 KGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
KGF +R ++ ++ K+ V + + F C G+C D + ++ + A +
Sbjct: 765 KGFEVSIRDYSAVIGRLCKRCLVTEAKYF------FCMMLSDGVCPDQDLFEVLLNAFHQ 818
Query: 210 EFMIDEAFRLLCNLVEDG 227
++ F LL +++ G
Sbjct: 819 CGHLNSEFELLAEMIKSG 836
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 60/232 (25%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIR 114
S++I+ K G D+A+ +FN+ + V+ Y+SL +C MI
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+ +PD T + L++ + GK+ E AK++ N+MI +G PD
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLE-------------------AKELYNEMITRGIAPD 349
Query: 175 LETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
T+NSLI+ CK L G D+ T I I + K +D+ RL
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409
Query: 222 NLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ G L P+ G+ + A F EM + PP+ Y
Sbjct: 410 EISSKG--LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--------- 109
+ P T++ +I+ F K + A ++F+ + C+ ++ Y+ L +
Sbjct: 345 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 404
Query: 110 VRMIR----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+R+ R KG +P+ T+ LV +C SGK+ A+E QE+ +G P V + +++
Sbjct: 405 MRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 464
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ G + N +E K + + + I I + +D+A+ L C+L +
Sbjct: 465 LCDNGEL------NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 226 DGHK 229
G K
Sbjct: 519 KGVK 522
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 35/170 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
R + G+ PD T + LVN +C G++ EA + + + P + + ++N
Sbjct: 130 RAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKG 189
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGELGLCADV----NTNKISIPAVSKE 210
+M++ G PD T+ ++ +CKSG L D+ I V
Sbjct: 190 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYS 249
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID +L +D G FDDA F+EM++K + Y+
Sbjct: 250 IVID-------SLCKD--------GSFDDALSLFNEMEMKGIKADVVTYS 284
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S +I+ F K G + A E++N+ MI +G PD T+
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNE----------------------MITRGIAPDTITYN 354
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK----------------Q 169
L++ +C + EA + + KG P + + ++N K +
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G +P+ T+N+L+ C+SG+L
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKL 436
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ GF PD+ T+ ++N C SG A + +++ ++ V +++ + K G
Sbjct: 200 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 259
Query: 171 SVPD-LETFNSLIETICKSGEL-GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
S D L FN + E+ G+ ADV T I + + D+ ++L ++ G
Sbjct: 260 SFDDALSLFNEM--------EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI--GR 309
Query: 229 KLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ P + G+ +A ++EM + P+ Y
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 78/229 (34%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S++I + K +D+ + +F + ++ + YN+L + F + M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-------------------------- 146
+ +G P T+ IL++ C +G++ +A E ++
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506
Query: 147 ---------LSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSL 181
LSDKG P V + M+ + K+GS+ PD T+N L
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566
Query: 182 IET------ICKSGEL-------GLCADVNTNKISIPAVSKEFMIDEAF 217
I + S EL G AD +T K+ I +S +D++F
Sbjct: 567 IRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDR-RLDKSF 614
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 53/201 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ FGK G +D +E+F + M KG P+ T+T
Sbjct: 787 TYTAMIDGFGKAGKVDKCLELFRE----------------------MGSKGCAPNFVTYT 824
Query: 126 ILVNAWCSSGKMREAQEFLQELSD--------------KGFNPPVRSAKQMVNKMIKQGS 171
+L+N C++G + EA L+E+ +G+ + ++ ++ K GS
Sbjct: 825 VLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGS 884
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKIS---------------IPAVSKEFMIDEA 216
P + + LI+ K+G L + +++ IS I + S ID A
Sbjct: 885 APTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHA 944
Query: 217 FRLLCNLVEDGHKLFPSLGQF 237
F L +++ DG + P LG F
Sbjct: 945 FELFYDMIRDG--VIPDLGTF 963
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G P+ + L++ +C + K+ EAQE ++ ++G+NP V + +++++ K
Sbjct: 671 MFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKR 730
Query: 172 VP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK- 229
+ L+ + ++E C ++ I +SK DEA++L+ + E G K
Sbjct: 731 LDLVLKVLSKMLENSC-------APNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKP 783
Query: 230 ----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F G+ D F EM K PN Y
Sbjct: 784 NVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTY 823
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M G VPD T+TIL++ + +G +++A +L E+ G P V +
Sbjct: 512 FKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLK 571
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ MI +G P++ T+ +LI+ CKSG +
Sbjct: 572 AKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNI 610
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 29/189 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+ F K G+I A ++ C+ V+ Y +L +++ M
Sbjct: 526 TYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELM 585
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
I KG P+ T+T L++ +C SG + +A + + P V ++ N + ++
Sbjct: 586 IAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK--- 642
Query: 173 PDLETFNSLIETICKSGELGLCADV---------NTNKISIPAVSKEF----MIDEAFRL 219
P++ T+ +L++ +CK+ ++ D+ N I A+ F +DEA +
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702
Query: 220 LCNLVEDGH 228
+VE G+
Sbjct: 703 FHKMVERGY 711
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCFV---RMIRKGFVPDKRTHTILVNAWCSSGKMR 138
+A V NK + +C+ + + M+ GFVPD T++ ++ C++ ++
Sbjct: 447 SAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVE 506
Query: 139 EAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLI 182
A +E+ G P V + A +++M++ G P + T+ +LI
Sbjct: 507 NAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLI 566
Query: 183 ETICKSGELGL 193
K+ ++ +
Sbjct: 567 HAYLKAKKVSV 577
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
++ FVP+ + +++ C + EA +FL + P V++
Sbjct: 301 KEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLG 360
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
K++++ MI +G P FNSL+ CKS +
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDF 394
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 26/169 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
++ D V + L+++I + ++GL + A+E + F + + YN+L F+R
Sbjct: 197 IRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADK 256
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE--------LSDKGFN 153
M G D+ T A C GK REA +++ L +K +
Sbjct: 257 LDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMIS 316
Query: 154 PPVRS-----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+ A +N+M +P+++T+ L+ +LG C +
Sbjct: 317 GLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365
>gi|341605701|gb|AEK82953.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQTCXFN-------GLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALXKHGKVDEAMXLFKRME 184
>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 58/266 (21%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW + +M+ + V +T +I+ ++ + +D AV FN + + +NSL
Sbjct: 121 MWDVVAIMRRQGV-VNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLC 179
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C + +RK F PD +T++IL+ W + + + ++ ++ D G P
Sbjct: 180 ALCKSKNVRKAQEIFEQMNGRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPD 239
Query: 156 VRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL-------- 191
+ + MV+ + K G V P ++ L+ T +
Sbjct: 240 IVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFL 299
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP-------------S 233
G+ DV + A K D AFR++ ++ +GH + P S
Sbjct: 300 DMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDM--EGHGITPNSRTWNIILNKLIS 357
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVY 259
LG+ D+A+ F M IK P+ Y
Sbjct: 358 LGKDDEAYRVFRRM-IKRCQPDSDTY 382
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-H------------VCFVRM 112
T ++++ K G ++ AV V T+ CQ +Y+ L H F+ M
Sbjct: 242 TYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDM 301
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS- 171
+ G VPD + LV A+C K A + ++ G P R+ ++NK+I G
Sbjct: 302 QKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKD 361
Query: 172 --------------VPDLETFNSLIETICKSGELGLCADV 197
PD +T+ +I+ C++ L + V
Sbjct: 362 DEAYRVFRRMIKRCQPDSDTYTMMIKMFCENDRLEMALKV 401
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
K F+P T ++L+N C G++ +A L+++ +KG PP + ++ ++K+G
Sbjct: 408 KQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDV 467
Query: 175 LE 176
LE
Sbjct: 468 LE 469
>gi|225456224|ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Vitis vinifera]
Length = 432
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 38/213 (17%)
Query: 48 MWKTIELM--KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+W+ + M K + V T++ +++ G+ GL + A+ F + F+C+ V YN++
Sbjct: 139 LWEFLHEMARKGGNGVVTTATITCLMKVLGEEGLANQALAAFYRMKQFHCKPDVYAYNTI 198
Query: 106 --HVCFVRMIRK-----------GFV--PDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
+C V RK GF PD T+TIL+ ++C LQ K
Sbjct: 199 IYALCRVGNFRKARFLLEQMELPGFRCPPDSFTYTILIGSYCKYS--------LQTGCRK 250
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNT-----NK 201
+ A + M+ +G VPD+ T+N LI+ CK+ L L D+N N+
Sbjct: 251 AVRRRLWEANHLFRIMLFKGFVPDVVTYNCLIDGCCKTYRIERALELFDDMNKRGCVPNR 310
Query: 202 ISIPAVSKEFM----IDEAFRLLCNLVEDGHKL 230
++ + + + ID+A +LC + E H +
Sbjct: 311 VTYNSFIRYYSAVNEIDKAVDMLCKMKEMNHGI 343
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 22/139 (15%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FN 153
L+ + H+ F M+ KGFVPD T+ L++ C + ++ A E +++ +G +N
Sbjct: 256 LWEANHL-FRIMLFKGFVPDVVTYNCLIDGCCKTYRIERALELFDDMNKRGCVPNRVTYN 314
Query: 154 PPVR---------SAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKIS 203
+R A M+ KM + +P ++ +I +C++G + D +
Sbjct: 315 SFIRYYSAVNEIDKAVDMLCKMKEMNHGIPTTSSYTPIIHALCETGRILEARDFLIELVD 374
Query: 204 IPAVSKEFMIDEAFRLLCN 222
+V +E+ ++++C+
Sbjct: 375 GGSVPREY----TYKVVCD 389
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 35/152 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------------HVCFV 110
T + +I+ K I+ A+E+F+ C + YNS +C +
Sbjct: 277 TYNCLIDGCCKTYRIERALELFDDMNKRGCVPNRVTYNSFIRYYSAVNEIDKAVDMLCKM 336
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+ + G +P ++T +++A C +G++ EA++FL EL D G
Sbjct: 337 KEMNHG-IPTTSSYTPIIHALCETGRILEARDFLIELVDG-------------------G 376
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKI 202
SVP T+ + +++ +GE + D +I
Sbjct: 377 SVPREYTYKVVCDSLRSAGEANMLGDELRGRI 408
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 41/184 (22%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI +G +PD T L+ +C SGK R+A ++ L + G P V + ++ K G
Sbjct: 132 RMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSG 191
Query: 171 SV-------------PDLETFNSLIETICKSGELGLC-------------ADVNTNKISI 204
+ PD+ T+N+++ ++C SG+L DV T I I
Sbjct: 192 EIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILI 251
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKT 251
A + + +A +LL + + G K P + G+ D+A F + M +
Sbjct: 252 EATCNDSGVGQAMKLLDEMRKKGCK--PDVVTYNVLINGICKEGRLDEAIKFLNNMPLYG 309
Query: 252 HPPN 255
PN
Sbjct: 310 CQPN 313
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 31/171 (18%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
+ +SV P T + I+ G + A+EV ++ C V+ Y L C
Sbjct: 201 ERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGV 260
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
M +KG PD T+ +L+N C G++ EA +FL + G P V
Sbjct: 261 GQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNII 320
Query: 157 -RS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
RS A++++ M+++G P + TFN LI +C+ LG DV
Sbjct: 321 LRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDV 371
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 34/220 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + L+ A++V K C L YN L F + M
Sbjct: 351 TFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 410
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD T+ L+ A C GK A E L +LS KG +P + + +++ + K G
Sbjct: 411 VSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 470
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
E L+E + + GL D+ T + + E +DEA ++ ++ +G + P
Sbjct: 471 ---EYAAELLEEMRRK---GLKPDIITYSTLLRGLGCEGKVDEAIKIFHDM--EGLSIKP 522
Query: 233 S--------LG-----QFDDAFCFFSEMQIKTHPPNRPVY 259
S LG Q A F + M K P + Y
Sbjct: 523 SAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATY 562
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 32/154 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I + K G ID A++V + + V+ YN++ +C R
Sbjct: 179 TYNVLIGGYCKSGEIDKALQVLER---MSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQ 235
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++ PD T+TIL+ A C+ + +A + L E+ KG P V + ++N + K+G +
Sbjct: 236 MQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 295
Query: 173 ----------------PDLETFNSLIETICKSGE 190
P++ T N ++ ++C +G
Sbjct: 296 DEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGR 329
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL+ A+++ K C L YN L F + M
Sbjct: 189 TFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM 248
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G PD T+ L+ A C GK+ A E L +LS KG +P
Sbjct: 249 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKT 308
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +++++M ++G PD+ T++SL+ + + G++
Sbjct: 309 ERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKV 343
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 16/102 (15%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------RS------ 158
M KG PD T+ +L+N C G++ EA +FL + G P V RS
Sbjct: 108 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 167
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A+++++ M+++G P + TFN LI +C+ G LG D+
Sbjct: 168 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI 209
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 56/201 (27%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
KPD + T +++I K G +D A++ N ++ CQ
Sbjct: 114 KPDVV-----TYNVLINGICKEGRLDEAIKFLNNMPSYGCQ------------------- 149
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------- 164
P+ TH I++ + CS+G+ +A++ L ++ KG +P V + ++N
Sbjct: 150 ---PNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRA 206
Query: 165 -----KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
KM G P+ ++N L+ CK ++ G D+ T + A
Sbjct: 207 IDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA 266
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
+ K+ +D A +L L G
Sbjct: 267 LCKDGKVDVAVEILNQLSSKG 287
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + ++ K G +D AVE+ N+ ++ C ++ YN++ + M
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 318
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
RKG PD T++ LV+ GK+ EA +F +L G P + ++ + K
Sbjct: 319 RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 378
Query: 173 PD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
++ +I CK E T I I ++ E + EA LL L G
Sbjct: 379 DRAIDFLAYMISKRCKPTE-------ATYTILIEGIAYEGLAKEALDLLNELCSRG 427
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 97/238 (40%), Gaps = 30/238 (12%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T +++I+ + G++D A+ +FN+ + VL Y ++
Sbjct: 376 VDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTV 435
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G PDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 495
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+ + ++N + K G V D + L + GL + +
Sbjct: 496 HLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNV------GLHPTAVVYSMLMDGYCLVGK 549
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+++A R+ +V G + + +G+ D+ F EM K P+ +Y
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 607
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 54/238 (22%)
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDK 121
GK G D+ + + + A C V+ YN++ C F M+++G PD
Sbjct: 196 GKSGQADDLLRMMAEGGAV-CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDF 254
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNK 165
T++ +V+A C + M +A+ FL+++ +KG P + A ++ +
Sbjct: 255 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
M +Q +PD+ TFN L+ ++CK G++ G DV + I + + +
Sbjct: 315 MRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374
Query: 213 IDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + L ++ DG K + + G D A F+EM+ PN Y
Sbjct: 375 LVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTY 432
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R+ +PD T +L+ + C GK++EA++ ++ KG NP V S M+N
Sbjct: 312 FKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 371
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G + D+ L+ G+ G+ + T + I A + M+D+A + + + G
Sbjct: 372 KGCLVDMTDLFDLM-----LGD-GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 425
Query: 229 K-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K +G+ DDA F++M + P++ Y
Sbjct: 426 KPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--NPPVRSAKQ 161
+L + R G VPD +++IL+ + C GK +A + L+ +++ G +P V +
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNT 224
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKS 188
+++ K+G V PD T++S++ +CK+
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKA 267
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRM 112
T S+++ K+ D A+ +F + A N + ++ N++ F +
Sbjct: 641 TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 700
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G VP T++I++ G + EA++ + + G P R +V +++K+ +
Sbjct: 701 SRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEI 760
Query: 173 PDLETFNSLIE 183
+ S I+
Sbjct: 761 VRAGAYLSKID 771
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 54/262 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA-FNCQQCVLLYNSLHVCFV 110
++ MK S T +++I F G ID A++VF + NC+ ++ Y L ++
Sbjct: 67 LDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYI 126
Query: 111 -------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
M+ +G PD T+ ++ C GK+ A EF++ L+ +G P V
Sbjct: 127 LEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVI 186
Query: 158 SAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL---------- 191
+ ++ ++ QG P++ T++ LI ++C+ G++
Sbjct: 187 TYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVM 246
Query: 192 ---GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQF 237
GL D I A +E +D A L ++ DG + + +L G
Sbjct: 247 KEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNG 306
Query: 238 DDAFCFFSEMQIKTHPPNRPVY 259
D A F ++ PPN Y
Sbjct: 307 DHAVEIFGKLDEVGCPPNVSSY 328
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------VRMIRKG 116
I+ K+G D+AVE+F K C V YN++ +M+ KG
Sbjct: 296 IMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKG 355
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-L 175
PD T+ L++ C G + EA L ++ F P + S K ++ + K + D +
Sbjct: 356 IDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAI 415
Query: 176 ETFNSLIETICKSGE 190
E ++IE C+ E
Sbjct: 416 EVLAAMIENGCQPNE 430
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 47/211 (22%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
KPD + T ++++ G D + ++ + C+ V+ Y+ L R
Sbjct: 182 KPDVI-----TYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKI 236
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---- 158
M KG PD + L+ A+C GK+ A EFL + GF P + +
Sbjct: 237 EESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTI 296
Query: 159 ------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCA------- 195
A ++ K+ + G P++ ++N+++ + SG+ LG+ +
Sbjct: 297 MAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGI 356
Query: 196 --DVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
DV T I + ++ M+DEA LL +++
Sbjct: 357 DPDVITYNSLISCLCRDGMVDEAIGLLADML 387
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------FNP---------PV 156
M+ K + PD T L+ + +S + +A + L G +N +
Sbjct: 1 MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRI 60
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV--------------NTNKI 202
SAK ++++M ++G PD+ T N +I T C G++ L V T I
Sbjct: 61 ESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTI 120
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKT 251
I A E IDEA +LL ++ G + G+ D AF F + +
Sbjct: 121 LIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRG 180
Query: 252 HPPNRPVY 259
P+ Y
Sbjct: 181 CKPDVITY 188
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 33/163 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----------------PP 155
+++ GF D R T L+ C G++ EA L E D+GF
Sbjct: 131 ILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGK 190
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEF 211
R A QM KM K P+L +N++I+ +CK G + GLC ++ N I + S
Sbjct: 191 TRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNS 250
Query: 212 MI---------DEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
MI A +LL +V G K++P + F+ D C
Sbjct: 251 MIHGFCSVGRFQAAVKLLDEMVVRG-KVYPDVYTFNILIDGLC 292
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W +E M+ T +++++++ KH D A+ +F
Sbjct: 406 WDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQ-------------------- 445
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+I G P+ RT+ IL++ C SG+++ A+E Q LS KG P +R+ M++ + K
Sbjct: 446 --HIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCK 503
Query: 169 QGSVPDLETF 178
+G + + E
Sbjct: 504 EGFLDEAEAL 513
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 29/193 (15%)
Query: 56 KPDSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV- 110
K + V+P + + +I+ K GL+D A + + + V YNS+ C V
Sbjct: 200 KMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVG 259
Query: 111 ----------RMIRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
M+ +G V PD T IL++ C G++ EA + + +G+ P + S
Sbjct: 260 RFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSY 319
Query: 160 KQMVNKMIKQGSVPDL-ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
++N GSV + + F+ ++E + C +N K M+DEA
Sbjct: 320 NALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLIN-------GYCKVRMVDEAMV 372
Query: 219 LLC-----NLVED 226
LL NLV D
Sbjct: 373 LLTEMHNKNLVPD 385
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 31/182 (17%)
Query: 86 VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
V + CT N V + + V M K VPD T+ L++ SG+ + ++
Sbjct: 351 VISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVE 410
Query: 146 ELSDKG-------FN---------PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ G +N A + +I+ G P++ T+N L++ +CKSG
Sbjct: 411 AMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSG 470
Query: 190 EL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
L G ++ T I I + KE +DEA LL +V + + P+
Sbjct: 471 RLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNY--LPNYIT 528
Query: 237 FD 238
FD
Sbjct: 529 FD 530
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
MI++G+ PD ++ L+N +C SG + EA++ ++ ++ P V S ++N
Sbjct: 307 MIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRM 366
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKI 202
+M + VPD T+N L++ + KSG G AD+ T +
Sbjct: 367 VDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNV 426
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
+ K D+A L +++E G
Sbjct: 427 LLDDYFKHEKFDKALALFQHIIEIG 451
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 47/240 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR----------MI 113
TLS +I+ K G I AV +F A ++Y++L +C R +
Sbjct: 401 TLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM 460
Query: 114 RKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS- 171
+K F PD T+ IL++ C SG + A+ F E+ + G P V + +++ + K G+
Sbjct: 461 KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNT 520
Query: 172 ------VPDLET----FNSLIETICKSGEL-GLC-----------ADVNTNKISIPAVSK 209
+ D+ + ++SL++ +CKSG+L G C A+ T I + K
Sbjct: 521 DAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCK 580
Query: 210 EFMIDEAFRLLCNLVEDG-------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVY 259
+DEA L + ++G + + +L G+ ++ + EM + P+R Y
Sbjct: 581 ANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEM-TRWWKPDRVTY 639
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 29/147 (19%)
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
+R+ T +IL+N +G M +A QE + G N +
Sbjct: 216 VRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKI 275
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+ A ++ K+ G P + T+N+L+ +CK G L G DV T
Sbjct: 276 QEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 335
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL 230
I + KE EA++L + G L
Sbjct: 336 IDGLGKEKRSFEAYKLFKEMASRGLAL 362
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 88/235 (37%), Gaps = 48/235 (20%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------H 106
S+ V T S++I K G++ A + + T C + Y ++
Sbjct: 219 SMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEA 278
Query: 107 VCFVRMIR-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------- 156
V + I G P T+ L+N C G++ EA + L+++ D G P V
Sbjct: 279 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 338
Query: 157 -----RS--AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS---IP- 205
RS A ++ +M +G D + +LI + ++G++ + V S +P
Sbjct: 339 LGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPD 398
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
V+ MID G+ A F M+ + PN VY+
Sbjct: 399 VVTLSTMIDG---------------LSKAGRIGAAVRIFKSMEARGLAPNEVVYS 438
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 50/172 (29%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M+ G +PD T+T L+ +C S K +A ++L +GF P V
Sbjct: 80 MVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGR 139
Query: 157 -RSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ A + +MIK GS +P+ T+NSLI C+ G++ D
Sbjct: 140 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM----------------------D 177
Query: 215 EAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPN 255
EA LL + E G F L + DDA+ ++M K PN
Sbjct: 178 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPN 229
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 41/175 (23%)
Query: 58 DSLSVFPQ-----------TLSLIIEEFGKHGLIDNAVEVFNK-CTAFNCQQCVLLYNSL 105
D+L VF Q T S +I+ K G + A+++F + + +C + YNSL
Sbjct: 107 DALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSL 166
Query: 106 HVCFVRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
F RM + G PD T+T L+N +C ++ +A + L +++ KG
Sbjct: 167 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 226
Query: 153 NPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
P V A ++ +M ++ P + T+N++++ C+ +L
Sbjct: 227 TPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQL 281
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 44/167 (26%)
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET 177
VP T+ L++ C + + EA + L+E M+ G +PD+ T
Sbjct: 51 VPTAVTYNSLISGLCKAERASEAYDLLEE-------------------MVYSGCIPDIFT 91
Query: 178 FNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ +LI CKS + G DV T I + KE + EA L ++
Sbjct: 92 YTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 151
Query: 225 EDGHKL------------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G + F +G+ D+A M P+ Y
Sbjct: 152 KSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTY 198
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 55/246 (22%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTA---------FNCQQCV-----LLYNSLHVCFVRMI 113
+++ +GK G + ++ N A FN C ++ +H+ F++M
Sbjct: 474 GIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHI-FIKMK 532
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVR 157
++G P+ T+ L++A C G++ +A ++ ++G P
Sbjct: 533 QQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWE 592
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISI 204
+++ +M+ QG PD+ FN+++ +CK G +GL DV + I
Sbjct: 593 KVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLI 652
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHP 253
+DEA +LL +V G K + G+ D+A+C F EM K
Sbjct: 653 DGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVT 712
Query: 254 PNRPVY 259
P Y
Sbjct: 713 PGVETY 718
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 53/248 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + II+ K +D A VF + + + YN++ +C F +M
Sbjct: 297 TYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQM 356
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
I KG PD T+TI+++ C + + A+ Q++ DKG P + +++
Sbjct: 357 IDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQW 416
Query: 165 ----KMIKQGSVPDLE----TFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+ IK+ S DLE T+ L++ +CK+G+ G+ V I
Sbjct: 417 EEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIM 476
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIKTH 252
+ K+ + E LL +V +G H++F ++ D+ F +M+ +
Sbjct: 477 LHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGL 536
Query: 253 PPNRPVYA 260
PN Y
Sbjct: 537 SPNVVTYG 544
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 56/248 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
+ +++I F G +D A +F V+ YN++ +C F +M
Sbjct: 195 SYNIVINGFFNEGQVDKAYSLF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQM 251
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ KG P+ T+ +++ C + ++ A+ Q++ DKG P V
Sbjct: 252 VEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAV 311
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A+ + +MI +G PD T+N++I+ +CK+ + G+ D T I
Sbjct: 312 DRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTII 371
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTH 252
I + K +D A + +++ G K + S GQ+++ EM
Sbjct: 372 IDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDL 431
Query: 253 PPNRPVYA 260
P+ Y
Sbjct: 432 EPDVFTYG 439
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 53/234 (22%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+KPD +S + +I+ +D AV++ + + + ++ YN+L
Sbjct: 641 LKPDVIS-----YNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR 695
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK----------- 150
+ F M+RKG P T+ ++N SG+ EA+E +
Sbjct: 696 IDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSI 755
Query: 151 ---GF--NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNK 201
GF N A ++ + D+ TFN +I+ + K G + L A + N
Sbjct: 756 ILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANG 815
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ +P+V +I E NL+E+G SL + D C FS M+ PN
Sbjct: 816 L-VPSVVTYRLIAE------NLIEEG-----SLEELD---CLFSVMEKSGTAPN 854
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 96/240 (40%), Gaps = 59/240 (24%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD +S + +I F K G D A +++ V+ YNS+ +
Sbjct: 194 PDVVSY-----TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
M++ G +PD T+ +++ +CSSG+ +EA FL+++ G P V +
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLM 308
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAV 207
A+++ + M K+G P++ T+ +L++ G L V
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL---------------V 353
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
++D R N + H +F L G+ D A FS+M+ + PN Y
Sbjct: 354 EMHGLLDLMVR---NGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYG 410
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 99/254 (38%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + G +D A+ VF+K + Y ++
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412
Query: 106 -------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG- 151
+ F +MI +G P + L++ C+ K A+E + E+ D+G
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472
Query: 152 ------FNPPVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
FN + S ++++ M++ G P++ T+N+LI C +G++
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM----- 527
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
DEA +LL +V G K + + + +DA F
Sbjct: 528 -----------------DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 570
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 571 EMESSGVSPDIITY 584
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G PD ++T ++N + G +A E+ D+G P V + A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMID 214
+++N M+K G +PD T+NS++ C SG+ +G + ++ + V+ ++D
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G P+ T+ L+N +C +GKM EA + L + G P + ++N
Sbjct: 499 FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCK 558
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 559 ISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 618
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + D+A ++ NL
Sbjct: 619 YNIILHGLCKNKLTDDALQMFQNL 642
>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 600
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 77/240 (32%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVR 111
QT ++I F K G+I A +F+ + V+ Y S+ H F
Sbjct: 294 QTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDL 353
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MI KG +P+ T+T L++ WC + M +A FL E+ + G +P V +
Sbjct: 354 MISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGK 413
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETI------------------------------ 185
AK++ M K G +P+L+T +++ +
Sbjct: 414 PVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNI 473
Query: 186 -----CKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
C SG+L G+ DV T I I + KE ++D+A LL + E+G
Sbjct: 474 ILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENG 533
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIR 114
S +++ K G++ A+ +F++ T Q + YN L +C M+R
Sbjct: 227 SGVVDGLCKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMR 286
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RS 158
KG +PD +T ++ + +G + A+ + G V +
Sbjct: 287 KGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKD 346
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A ++ + MI +G +P++ T+ SLI C++
Sbjct: 347 AMEVFDLMISKGCLPNIVTYTSLIHGWCET 376
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M+ +G + D +T+T+L+N +GK+ +A+E E+ KG P V S
Sbjct: 583 FRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSK 642
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A + ++M++ G ++ +N L+ C+SGE + K + +S +
Sbjct: 643 LGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGE------IEKAKELLDEMSGKGF 696
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
A C ++ DG + G +AF F EM++K P+ VY
Sbjct: 697 PPNAVT-YCTII-DG---YCKSGDLAEAFQLFDEMKLKGLVPDSFVY 738
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T ++++ K+G +++A E+F++ V Y +L F
Sbjct: 596 KTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDE 655
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M++ G + + +L+ +C SG++ +A+E L E+S KGF P
Sbjct: 656 MVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGD 715
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A Q+ ++M +G VPD + +L++ C+
Sbjct: 716 LAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCR 747
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 28/156 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ F K G + A +F++ V++YN L F R M KG
Sbjct: 636 LIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKG 695
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK-------- 168
F P+ T+ +++ +C SG + EA + E+ KG P +V+ +
Sbjct: 696 FPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 755
Query: 169 -------QGSVPDLETFNSLIETICKSGELGLCADV 197
+G FN+LI + K G+ L D+
Sbjct: 756 TIFETNEKGCASSSAPFNALINWVFKFGKTELTTDM 791
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 36/212 (16%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ------------QCVLLYNSLHV---CFVR 111
++I+ + + G +D AV VF+ + +L N L + +
Sbjct: 155 FGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYKG 214
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL----QELSDKGFNPPVRSAKQMVNKMI 167
M+ + V D +++ +L+ A C G ++ A++ L +EL N V A ++ M
Sbjct: 215 MVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLN--VDEALELKKSMS 272
Query: 168 KQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMID 214
+G VP +++N LI+ +CK L GL AD I I + K D
Sbjct: 273 CKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNAD 332
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
A L+ +V G + P + +D C S+
Sbjct: 333 AANGLVHEMVSHGFSIDPMM--YDYFICVMSK 362
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 34/165 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK---------- 115
T +++I+ K G ++ A E+F+ N V+ Y SL + +M R+
Sbjct: 810 TYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEV 869
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREA-----QEFLQELSDKGFNPPVRS--------- 158
G PD +++++NA+ G +A Q F + D G + +
Sbjct: 870 IAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFA 929
Query: 159 -------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
A+++V M++ +PD T LI C S + AD
Sbjct: 930 KVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAAD 974
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------- 105
E MK D T +++I +G+ G +D+AV++F + NCQ V+ YNSL
Sbjct: 454 EKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKN 513
Query: 106 ------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
H+ F M KG PD T++ L+ + + K V A
Sbjct: 514 GDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDK-------------------VEMA 554
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+ ++MI +G P+L T+N L++ + +SG D+
Sbjct: 555 CSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDL 592
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-------------LHVCFVRMIRKG 116
++E G I A+++ N+ ++YN+ +H + +M + G
Sbjct: 401 MLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDG 460
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
PD T+ IL++++ +G++ A + +EL + P V S ++N + K G V
Sbjct: 461 PPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAH 520
Query: 173 ------------PDLETFNSLIETICKSGEL 191
PD+ T+++LIE K+ ++
Sbjct: 521 MRFKEMQEKGLNPDVVTYSTLIECFGKTDKV 551
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R+ PD T+TI++ +GK E+ Q + +KGF + + M+ + K
Sbjct: 246 FEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAK 305
Query: 169 QGSVPD--LETFNSLIETICKSGELG-------LCADVNTNKI-SIPAVSKEFMIDEAF- 217
G + D + F+ ++E C+ E L A+ NK+ +I +SK++M + +
Sbjct: 306 -GRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYA 364
Query: 218 ---RLLCNL--VEDGHKLFPSLGQFDD 239
R L L + H+LF ++ D
Sbjct: 365 YFVRTLSKLGHSSEAHRLFCNMWNVHD 391
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 42/223 (18%)
Query: 49 WKTIELMK-----PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
+K E MK PD+ T +++I GK G D ++ +F ++ YN
Sbjct: 243 YKVFEDMKRRHCEPDTF-----TYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYN 297
Query: 104 SL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
++ + F +M+ G P++ T+++L+N + G++ + + E+S K
Sbjct: 298 TMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNIV-EMSKK 356
Query: 151 GFNPPVRS--------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
N + + A ++ M D + + S++E++C SG++ D
Sbjct: 357 YMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAID 416
Query: 197 VNTNKISIPAVSKE-FMIDEAFRLLCNL--VEDGHKLFPSLGQ 236
+ N+ ++ + M + F L L V H L+ + Q
Sbjct: 417 L-LNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQ 458
>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
Length = 458
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 57/245 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ + +I F K G D A +++ V+ Y+S+ + M
Sbjct: 206 SYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTM 265
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---RS----------- 158
++ G +PD T++ +++ +CSSG+ +E L ++ G P V RS
Sbjct: 266 VKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRC 325
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A+++ + M K+G PD+ T+ +L++ G L G+ D + I
Sbjct: 326 TKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 385
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
I A +K+ +D+A + + + H L P++ G DDA +F +M +
Sbjct: 386 ICAYAKQEKVDQAMLVFSKMRQ--HGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDE 443
Query: 251 THPPN 255
PN
Sbjct: 444 GLTPN 448
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--GFNPP-VRSA 159
+++ + RM +PD + TIL+ C + +EA E L ++D G +PP V S
Sbjct: 148 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 207
Query: 160 KQMVNKMIKQGS----------------VPDLETFNSLIETICKS 188
++N K+G P++ T++S+I +CK+
Sbjct: 208 TTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKA 252
>gi|410109907|gb|AFV61033.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
trifolia]
Length = 250
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 36/159 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E P SL F ++++ F K G I A VF+ T + + V+ YN+L ++R
Sbjct: 114 LECGYPASLYFF----NILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIR 169
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
M+ G PD T+++L+N +C KM +A E E
Sbjct: 170 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGFCKESKMDDANELFDE------------ 217
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
M+ +G VP+ TF +LI+ CK+G + L ++
Sbjct: 218 -------MLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 249
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MIRKGF PD +++A+C GKM EA L ++ +G P V S
Sbjct: 538 MIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKD 597
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A + +N+++ G P+ +N+LI ++G + V SI
Sbjct: 598 IQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCS 657
Query: 216 AFRLLCN--LVEDGHKLFPS----------------------LGQFDDAFCFFSEMQIKT 251
+C+ LV++ +F +G+ D+A +F EM+ ++
Sbjct: 658 LMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRS 717
Query: 252 HPPNRPVY 259
PPN+ Y
Sbjct: 718 IPPNKITY 725
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ KG D T+ I++ C K+ EA + ++ KGF P
Sbjct: 503 MVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGK 562
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A ++ +M +G PD+ ++ ++I+ CK+ ++
Sbjct: 563 MEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDI 598
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 82/228 (35%), Gaps = 76/228 (33%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPV----- 156
F M+ K T+ ++ A C G+M A+ L+E+ G FN V
Sbjct: 359 FDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQ 418
Query: 157 -----RSAKQMVNKMIKQGSVP-----------------------------------DLE 176
S +++++M+K+G P ++
Sbjct: 419 RTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIA 478
Query: 177 TFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
T N+LI +C+ + G+ D T I I K+ I+EA +L ++
Sbjct: 479 TSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDM 538
Query: 224 VEDGHK----LFPS-------LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ G K +F S LG+ ++A +M+I+ P+ Y
Sbjct: 539 IRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYG 586
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 29/158 (18%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTH 124
GL+D A +F + + + V+ Y + +C F M + P+K T+
Sbjct: 666 GLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITY 725
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIET 184
T L+ A+C SG EA + E+ G P S +V +SL +
Sbjct: 726 TTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVT---------GFSQVDSLDKA 776
Query: 185 ICKSGELGL------CAD-VNTNKISIPAVSKEFMIDE 215
I K+ E+ C D V N+I+ P KE E
Sbjct: 777 IEKAAEISSIMTQNDCLDNVLVNRITTPWCEKEVASSE 814
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 96/249 (38%), Gaps = 57/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +I K GL A E+ +K + V++YN + +C + +
Sbjct: 185 TYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDV 244
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ +G PD T+T L++ +C G+ RE L ++ D+ N V +
Sbjct: 245 VGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGML 304
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETIC-------------KSGELGLCADVNTNKIS 203
A M N MI++G PDL TFN+L+ C E G+ DV + I
Sbjct: 305 GKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNIL 364
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
I K IDEA L + + KL P++ G+ A+ FS +
Sbjct: 365 IIGYCKNNRIDEALSLFNKM--NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDG 422
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 423 GPSPNVITY 431
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 44/190 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MI +G PD T L++ +C + EA++ ++ G P V S
Sbjct: 314 MIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNR 373
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
A + NKM + P++ T++SLI+ +CKSG + G +V T I
Sbjct: 374 IDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNI 433
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQI 249
+ A+ K ++D+A L + E G L P++ + D+A F EM
Sbjct: 434 MLDALCKIQLVDKAIELFNLMFERG--LTPNVSSYNILINGYCKSKRIDEAMNLFEEMHR 491
Query: 250 KTHPPNRPVY 259
+ P+ Y
Sbjct: 492 RNLVPDSVTY 501
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
++ +GF+ D+ T+ L+N C G REA E L ++ + P V +V+ + K G
Sbjct: 174 VVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGL 233
Query: 172 V----------------PDLETFNSLIETICKSGELG-----LC--------ADVNTNKI 202
V PD+ T+ LI C G+ LC +V T I
Sbjct: 234 VTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNI 293
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEM 247
I A+ K+ M+ +A + ++E G + P L F+ +C ++++
Sbjct: 294 LIDALCKKGMLGKAHDMRNLMIERGQR--PDLVTFNTLMSGYCLYNDV 339
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 41/126 (32%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++++ K L+D A+E+FN M +G P+ ++
Sbjct: 430 TYNIMLDALCKIQLVDKAIELFN----------------------LMFERGLTPNVSSYN 467
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
IL+N +C S ++ EA +E M ++ VPD T+N LI+ +
Sbjct: 468 ILINGYCKSKRIDEAMNLFEE-------------------MHRRNLVPDSVTYNCLIDGL 508
Query: 186 CKSGEL 191
CKSG +
Sbjct: 509 CKSGRI 514
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 29/139 (20%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR-------------KGFVPDKRTHTI 126
ID+AV +F + + V+ +N + V+M +G P T +I
Sbjct: 59 IDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSI 118
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVNKMIKQG 170
L+N +C G M A L + +G+ N VR A + + ++ QG
Sbjct: 119 LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQG 178
Query: 171 SVPDLETFNSLIETICKSG 189
+ D T+ +LI +CK G
Sbjct: 179 FLLDEVTYGTLINGLCKIG 197
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 51/233 (21%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--------------LH 106
SVF T +I +G+HG + ++E+ + +L YN+ L
Sbjct: 176 SVFSYTA--LINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLL 233
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV--- 163
F M +G PD T+ L+NA + G EA+ + +++ G P + + + +V
Sbjct: 234 SLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETF 293
Query: 164 ---NKMIK----------QGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPA 206
NK+ K G++PD+ ++N L+E G+ +G+ + + A
Sbjct: 294 GKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNA 353
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
V+ + +L NL GH G++DD F EM++ P+ Y
Sbjct: 354 VT--------YSMLLNLY-GGH------GRYDDVRELFLEMKVSNTEPDVGTY 391
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 40/223 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S+++ +G HG D+ E+F + N + V YN L F M
Sbjct: 355 TYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDM 414
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ + P+ T+ L+ A G +A++ L + +KG P ++
Sbjct: 415 VEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASY 474
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
A M N M + GS P +ET+NSLI + G L ++ K+ V+++
Sbjct: 475 EEALVMFNTMNEMGSKPTVETYNSLINMFARGG-LYKESEAIMWKMGESGVARD------ 527
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
R N V +G++ GQF++A + E++ P+ +
Sbjct: 528 -RDSFNGVIEGYR---QGGQFEEAIKTYVELEKARFQPDERTF 566
>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 61/271 (22%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN---KCTAFN--------- 94
S W ++++ + +I F G + AVEVF+ KC
Sbjct: 266 SAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILV 325
Query: 95 ---CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
C+Q +L + V M R G P+ +++ L++ C +G++ A E + L D+G
Sbjct: 326 DGLCKQGDVLTG--YYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQG 383
Query: 152 F----------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL---- 191
F + + + N M+ VPD ++SLI C+ +L
Sbjct: 384 FKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEAL 443
Query: 192 ---------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF----- 237
G+C +V T I + S E +I EAF L + + G + P+L +
Sbjct: 444 EVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFG--VVPNLCTYRVIIN 501
Query: 238 --------DDAFCFFSEMQIKTHPPNRPVYA 260
+D + F++M + + P+ +Y+
Sbjct: 502 GLCKVNKPNDVWGIFADMIKRGYVPDTVLYS 532
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 44/232 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLY------- 102
+ ELM D + T ++++ F GLI A +K F + Y
Sbjct: 444 EVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGL 503
Query: 103 ------NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
N + F MI++G+VPD ++I+++ + + ++EA ++ D+G P +
Sbjct: 504 CKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNI 563
Query: 157 RSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGEL--------- 191
+ ++N MI +G PD + SLI CK +
Sbjct: 564 FTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFRE 623
Query: 192 ----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDD 239
GL AD I SK +D A + ++ G L P++ + D
Sbjct: 624 METEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKG--LTPTVVTYTD 673
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 36/183 (19%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSG 135
KH I ++ + C + + C L+N M+ FVPD ++ L+ A+C
Sbjct: 385 KHDHIVYSIVLHGCCQHLDLEICYDLWND-------MVHHNFVPDAYNYSSLIYAYCRHR 437
Query: 136 KMREAQEFLQELSDKGFNPPVRSAKQMV----------------NKMIKQGSVPDLETFN 179
+++EA E + + G P V + +V +K+ + G VP+L T+
Sbjct: 438 QLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYR 497
Query: 180 SLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+I +CK + G D I I K + EAFRL +V++
Sbjct: 498 VIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDE 557
Query: 227 GHK 229
G K
Sbjct: 558 GTK 560
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRS 158
+G P+ T+ + C + +++ A FLQ L +G+ + V
Sbjct: 242 EGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHK 301
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ + M K G VPD+ +++ L++ +CK G++
Sbjct: 302 AVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDV 334
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 41/189 (21%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRMIRKGFVPDKRTHTI 126
+D A +VF + T C + + Y L V+M P+ RT+T+
Sbjct: 206 VDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTV 265
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQG 170
L++A C SG+ EA +++S+ G P + A ++ M++ G
Sbjct: 266 LIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENG 325
Query: 171 SVPDLETFNSLIETICKSG------------ELGLCADVNTNKISIPAVSKEFMIDEAFR 218
+P++ T+N+LI+ CK E L D+ T I +D A+R
Sbjct: 326 LMPNVITYNALIKGFCKKNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYR 385
Query: 219 LLCNLVEDG 227
LL + E G
Sbjct: 386 LLSLMEESG 394
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 36/211 (17%)
Query: 47 SMWKTIELMK--PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
S+W +E PD+++ S I+ K GL++ A E F++ + +YNS
Sbjct: 579 SLWYEMEARGICPDAIA-----FSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNS 633
Query: 105 L--HVCFV-----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L +C M +KG +PD T I++N +C G+M+ A + E+ G
Sbjct: 634 LIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIG 693
Query: 152 FNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA 195
P + SA + +NKM G PD+ T+N I+ C S ++
Sbjct: 694 VTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAV 753
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+ I++ V + +C + D
Sbjct: 754 TMLDELIAVGVVPNTVTYNTMMNAVCTDMLD 784
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 104/264 (39%), Gaps = 44/264 (16%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAV 84
VR A L RL L + S+WK + M D +++I F + G + A
Sbjct: 239 VRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAE 298
Query: 85 EVFNKCTAFNCQQCVLLYNSLHVCF-VR------------MIRKGFVPDKRTHTILVNAW 131
+ F C+ V YN L + +R MI+ G P T + ++ A+
Sbjct: 299 SLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAF 358
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNKMIKQGSVPDL 175
C+ G + EA++ + + + G +P V A + +M +G PD
Sbjct: 359 CNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDG 418
Query: 176 ETFNSLIETICKSG------EL-------GLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
TFN L+ K G EL L D + +S+ + +DEA + L +
Sbjct: 419 ATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLED 478
Query: 223 LVEDGHKLFPSLGQFDDAFCFFSE 246
++E G + PS+ F+ +S
Sbjct: 479 MLEKG--MPPSVVAFNSVIAAYSR 500
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RM 112
T ++II F K G + +A + F + + YN+L C V +M
Sbjct: 665 TTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKM 724
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G+ PD T+ I + +CSS K+ A L EL G P + M+N
Sbjct: 725 YASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVCTDMLD 784
Query: 165 -------KMIKQGSVPDLETFNSLIETICKSG 189
K++K VP++ T N L+ CK G
Sbjct: 785 RAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQG 816
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 29/136 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
+MI KG +K T+L++ + G A E+ +G P
Sbjct: 548 KMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAG 607
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
V A + ++M K+G VP+ +NSLI +C G+L GL D+ T
Sbjct: 608 LVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTN 667
Query: 202 ISIPAVSKEFMIDEAF 217
I I KE + AF
Sbjct: 668 IIINGFCKEGRMKSAF 683
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------- 154
H + M +G PD + ++ +G + EA E E+S KGF P
Sbjct: 578 HSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHG 637
Query: 155 -----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A ++ +M ++G +PD+ T N +I CK G +
Sbjct: 638 LCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRM 679
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 44/185 (23%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
VPD + + V C +G++ EA +FL+++ +KG P V + A
Sbjct: 449 LVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAH 508
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS----IPAVSKEFMIDEA 216
+ M+ G VP T +S++ + K G L D+ I + V+ ++D
Sbjct: 509 KAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGY 568
Query: 217 FRLLCNLVEDGHKLFPSL----------------------GQFDDAFCFFSEMQIKTHPP 254
F++ H L+ + G ++A+ FSEM K P
Sbjct: 569 FKV--GDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVP 626
Query: 255 NRPVY 259
N VY
Sbjct: 627 NNFVY 631
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVR 111
T +++I+ K G ID A+ +F + N ++ Y SL +C +
Sbjct: 273 TFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC-KK 331
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +G P+ ++TIL++A C G++ A++F Q L KG++ VR+ M+N + K G
Sbjct: 332 MKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGL 391
Query: 172 VPDLETFNSLIE 183
D+ S +E
Sbjct: 392 FGDVMDLKSKME 403
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 35/171 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ MI KG P+ T+T L++ +C G ++EA L E+ K NP V + +++ + K
Sbjct: 224 YSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAK 283
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVS 208
+G + P++ T+ SLI+ +CK+ L LC + I S
Sbjct: 284 EGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYS 343
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++D LC G+ ++A FF + +K + N Y
Sbjct: 344 YTILLDA----LC-----------KGGRLENAKQFFQHLLVKGYHLNVRTY 379
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 27/163 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F ++++G+ P+ T L+ C G+++ A F ++ +GF S ++N + K
Sbjct: 119 FANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCK 178
Query: 169 QGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
G PDL + ++I +CK+ LG D+ + I F
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFT 238
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
C +G +AF +EM++K P+
Sbjct: 239 YTTLIHGFC-----------IMGNLKEAFSLLNEMKLKNINPD 270
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 85/281 (30%)
Query: 28 DIYAERTLNRLNLTLISELSMWKTIE--LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNA 83
DI+ TL + + +LS W+ + ++ L+++P T + +I+ K G +++A
Sbjct: 247 DIFTYSTL----IDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDA 302
Query: 84 VEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNA 130
E+ V+ YN + F MI K PD ++ IL+N
Sbjct: 303 EEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILING 362
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPD 174
+ K+ EA + +E+S KG P + +SA+ ++M+ G +PD
Sbjct: 363 YARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPD 422
Query: 175 LET-----------------------------------FNSLIETICKSGEL-------- 191
L T + ++I+ +CK+G+L
Sbjct: 423 LYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFE 482
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
GL DV T I +E ++DEA +L + ++G
Sbjct: 483 KLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG 523
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 47/223 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFN-CQQCVLLYNSL--HVC----------FVRM 112
T + +I + +AV +F K N C+ ++Y ++ +C +R+
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL 203
Query: 113 IRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
+ +G P+ RT+TI+++A+C G + A L E+ K P + + +++
Sbjct: 204 MEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQ 263
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+MI P++ TFNS+I+ +CK G++ ++ +MI++
Sbjct: 264 WENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEI-----------MRYMIEK 312
Query: 216 AFR---LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ N++ DG+ L GQ D A F M K+ P+
Sbjct: 313 GVDPDVITYNMIIDGYGL---RGQVDRAREIFDSMINKSIEPD 352
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPD 120
+ K+GL++ A+ F+K + +Y ++ H F ++ G PD
Sbjct: 433 YFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPD 492
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
T+T +++ +C G + EA++ L+++ D G R+ +V ++ V +++ F
Sbjct: 493 VITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAF 550
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---------MIRK 115
Q + +I+ K+G +D A F K V+ Y ++ + + M+RK
Sbjct: 459 QIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRK 518
Query: 116 ----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
G + D RT+ ++V + S K+ E + FL+E++ K F+
Sbjct: 519 MEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFS 560
>gi|50261843|gb|AAT72474.1| AT1G03560 [Arabidopsis lyrata subsp. petraea]
Length = 201
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
LY V F MIRKG P+ +T+L++ + +G + +A L + D+GFNP V +
Sbjct: 1 LYEGYAV-FENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYS 59
Query: 161 QMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+VN + K G V + ++ F + C+ GL + I + K +DEA RL
Sbjct: 60 VVVNGLCKNGRVEEAMDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRVDEAERL 112
Query: 220 LCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+ E G F G+ D+A F M+
Sbjct: 113 FEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRME 152
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 37/202 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM--------IRK-- 115
T S +I+ + K GL A+ +F + N + + YN++ R+ IR+
Sbjct: 298 TYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAM 357
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
GF D T+ L++++ GK REA L+E+ +G +P +
Sbjct: 358 EEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFH 417
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFM 212
R A + + K G PD+ +++L++ CK+G L L ++ N I ++ +
Sbjct: 418 RDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSL 477
Query: 213 IDEAFRLLCNLVEDGHKLFPSL 234
+D A+ C +V K FP L
Sbjct: 478 LD-AYGRQCLMVR---KNFPKL 495
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 43/205 (20%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC------------FVRMIR 114
S +I +G+ G + AVE+F C+ +++YN+ + C F M+
Sbjct: 160 SSLICAYGRSGKLAKAVEIFEAMKVV-CKPNLVVYNAVIDACSKGGDYPTALRIFREMLE 218
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G PD+ T L++A + + E E+ ++G D
Sbjct: 219 QGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI-------------------ARD 259
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
T+N+LI T C+ G++ L A + + ++K I+ + ++ DG + L
Sbjct: 260 DVTYNTLIATYCRGGQMHLGAAL------METMAKSSGIEPSVITYSTMI-DG---YAKL 309
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G +A F EM+ + P+ Y
Sbjct: 310 GLAHEAIALFQEMRNQNVEPDGICY 334
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 22/118 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E MK S T S +I+ + KHG +A+ +F
Sbjct: 389 LEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVK-------------------- 428
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
+ G PD ++ LV+ C +G EA L+E++D G P V + +++ +Q
Sbjct: 429 --KAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQ 484
>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
Length = 768
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 99/241 (41%), Gaps = 40/241 (16%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
M ++LM + +S +++ + K +ID A+ +F+K V+ Y +L
Sbjct: 326 MHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALID 385
Query: 106 HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--- 151
+C F +MI +G PD + LV C+ K +A++ E+ D+G
Sbjct: 386 ALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRL 445
Query: 152 ----FN---------PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN 198
FN V A+++++ M++ PD+ ++N+L++ C +G + A +
Sbjct: 446 NAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLL 505
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
+SI EF + C + DDA+ F EM +K P
Sbjct: 506 DVMVSIGLKPDEFTYNTLLHGYC-----------KARRIDDAYSLFREMLMKGLTPGVVT 554
Query: 259 Y 259
Y
Sbjct: 555 Y 555
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 44/194 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F MI KG P+ T+T L++ + S+GK +E + LQE+S G P
Sbjct: 225 FQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCK 284
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
A+ + + +I++G P + + L+ G L G+ D +
Sbjct: 285 NGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHI 344
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSE 246
I A +K+ MIDEA + + + L P LG+ DDA F++
Sbjct: 345 FNIMFNAYAKKAMIDEAMHIFDKMRQ--QWLSPGVVNYGALIDALCKLGRVDDAVLKFNQ 402
Query: 247 MQIKTHPPNRPVYA 260
M + P+ V++
Sbjct: 403 MINEGVTPDIFVFS 416
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
+ +H M+R G PD I+ NA+ + EA ++ + +P V + +
Sbjct: 324 SEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGAL 383
Query: 163 V----------------NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPA 206
+ N+MI +G PD+ F+SL+ +C + K+
Sbjct: 384 IDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWE-----KAEKLFFEV 438
Query: 207 VSKEFMIDEAF--RLLCNLVEDGH 228
+ + ++ AF L+CNL +G
Sbjct: 439 LDQGIRLNAAFFNILMCNLCREGR 462
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 34/166 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVCF---- 109
+KPD T + ++ + K ID+A +F + V+ YN+ LH F
Sbjct: 513 LKPDEF-----TYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGR 567
Query: 110 --------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ MI D T+TI++N C + + EA + Q L K + +
Sbjct: 568 FCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINI 627
Query: 162 MVNKMIKQGS----------------VPDLETFNSLIETICKSGEL 191
M+ ++K G VPD+ET+ + E + K G L
Sbjct: 628 MIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSL 673
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G PD+ T+ L++ +C + ++ +A +E+ KG P V + +++ + + G
Sbjct: 508 MVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGR 567
Query: 172 VPDL-ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
+ E + ++I K D+ T I + + + +DEAF++ +L
Sbjct: 568 FCEAKELYLNMINNRRK-------CDIYTYTIILNGLCRNNFVDEAFKMFQSL 613
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 53/246 (21%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF-------- 117
++++ F K G + NA VF++ + V+ +N+L C + +GF
Sbjct: 252 NVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMES 311
Query: 118 ---VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
PD T + L+N C G++ E E+ +G P V
Sbjct: 312 EGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDL 371
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A + M+ QG PDL T+N+LI +CK G+L GL D T I
Sbjct: 372 ALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLID 431
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTHPP 254
K+ ++ A + +VE+G +L F +L G+ DA ++M P
Sbjct: 432 GCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKP 491
Query: 255 NRPVYA 260
+ P Y
Sbjct: 492 DDPTYT 497
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 52/219 (23%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC---VLLYNSLHVCFVRMIRKGFVPDKRTH 124
SL+ +E GL+ N V F C+ + L N F M+ +G PD T+
Sbjct: 338 SLLFDEMCGRGLVPNGV-TFTTLIDGQCKGGKVDLALKN-----FQMMLAQGVRPDLVTY 391
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIET 184
L+N C G ++E A+++VN+M G PD TF +LI+
Sbjct: 392 NALINGLCKVGDLKE-------------------ARRLVNEMTASGLKPDKITFTTLIDG 432
Query: 185 ICKSGELGLCADVNTNKIS-------------IPAVSKEFMIDEAFRLLCNLVEDGHKL- 230
CK G++ ++ + I + +E + +A R+L +++ G K
Sbjct: 433 CCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPD 492
Query: 231 FPSLGQFDDAFC----------FFSEMQIKTHPPNRPVY 259
P+ D FC EMQ H P Y
Sbjct: 493 DPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTY 531
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
RM+ +G D T L++ C G++ +A L ++ GF P
Sbjct: 448 RMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKG 507
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V+ +++ +M G VP + T+N+L+ +CK G++
Sbjct: 508 DVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQM 544
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV 110
T +KPD + T + +I+ K G +++A+E+ + + + + +L
Sbjct: 415 TASGLKPDKI-----TFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLC 469
Query: 111 R-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV- 156
R M+ GF PD T+T++++ +C G ++ + L+E+ G P V
Sbjct: 470 REGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVV 529
Query: 157 ---------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
++AK +++ M+ G P+ T+N L++ K G
Sbjct: 530 TYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHG 577
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G VP T+ L+N C G+M+ A+ L + + G P + +++ K GS
Sbjct: 519 MQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGS 578
Query: 172 VPDLETFNS 180
D++ FNS
Sbjct: 579 SVDVDIFNS 587
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S +I F D A E+F + C+ + YN L H F +M
Sbjct: 554 TYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKM 613
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD+ T+T L+ +C+ GK+ +A E E+ KG +P V + ++ + G
Sbjct: 614 VERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKP 673
Query: 173 PDL-ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
+ + F ++ CK D ++ I I +SK +D+A + + +D H
Sbjct: 674 GEAKQLFQVMVSRQCK-------PDTVSHNIMIDGLSKAKRLDDAVEVFERMEQD-HGCS 725
Query: 232 PSL 234
P L
Sbjct: 726 PDL 728
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 41/142 (28%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+I+E K G +D+A+ + MI++G+ PD TH++L+N
Sbjct: 380 VIQELCKAGRVDSALSLLET----------------------MIKRGYCPDMATHSMLIN 417
Query: 130 AWCSSGKMREAQEFLQELSDK---------GFNP---------PVRSAKQMVNKMIKQGS 171
C + K++EAQEFLQ + K +N V A + + M+ + S
Sbjct: 418 ELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERS 477
Query: 172 -VPDLETFNSLIETICKSGELG 192
VPD+ +++ LI+ CK ELG
Sbjct: 478 FVPDVVSYSILIDGFCKIDELG 499
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 46/210 (21%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A Q +++++ + + FVPD +++IL++ +C ++ A++ +++ D
Sbjct: 457 CKAKKVHQAFAIFSTM------VSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMID 510
Query: 150 KGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETIC------K 187
P V + +N ++++G + PD+ T+++LI +
Sbjct: 511 LNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQ 570
Query: 188 SGEL-------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----------- 229
+ EL G + T + + KE DEA L +VE G
Sbjct: 571 AHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLY 630
Query: 230 LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F ++G+ + A F EM K H P+ Y
Sbjct: 631 GFCNVGKIEQAVEVFDEMVSKGHDPDVVAY 660
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 41/192 (21%)
Query: 41 TLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL 100
T++SE S PD +S S++I+ F K + A +++ + NC V
Sbjct: 471 TMVSERSFV-------PDVVS-----YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVT 518
Query: 101 LYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
YN+ +R M+ G PD T++ L++ + + K +A E + +
Sbjct: 519 TYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETM 578
Query: 148 SDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+G P + A ++ KM+++G PD T+ +L+ C G++
Sbjct: 579 ISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKI 638
Query: 192 GLCADVNTNKIS 203
+V +S
Sbjct: 639 EQAVEVFDEMVS 650
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 16/112 (14%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
K D S +T+ +I+ G A+ F A N + V YN L
Sbjct: 89 KWDGKSSCRETVGAVIKHLRDGG---EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDL 145
Query: 106 ---HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
F +M+ +G VP+ T+ +LV + C EA F E+ DKGF P
Sbjct: 146 KQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKP 197
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
R +++ + + +L+ SG++ +A+E E++ + P
Sbjct: 329 RTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAG 388
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V SA ++ MIK+G PD+ T + LI +CK+ ++
Sbjct: 389 RVDSALSLLETMIKRGYCPDMATHSMLINELCKADKI 425
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 56/228 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNK---------CTAFNCQQCVL----LYNSLHVCFVRMIRKG 116
+I+ F K G ++ A ++FN+ + +NC L + +M+ KG
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
+PD T+ L+ + S+G+ +EA VR +K KM QG +PD+
Sbjct: 282 VLPDNWTYNSLIYGYSSTGQWKEA---------------VRVSK----KMTSQGILPDVV 322
Query: 177 TFNSLIETICKSGEL-------------GLCADVNTNKISIPA-VSKEFMID--EAFRLL 220
T NSL+ ++CK G++ G D+ + KI + +K ++D E F L+
Sbjct: 323 TLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLM 382
Query: 221 CN--LVEDGH------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ + D H K + G D A F+EM+ + P+ Y+
Sbjct: 383 LSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYS 430
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/235 (19%), Positives = 97/235 (41%), Gaps = 40/235 (17%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-- 111
LM D ++ +++I+ + K G++D A +FN+ + V+ Y+++ R
Sbjct: 381 LMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIG 440
Query: 112 -----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
MI +G P T+ L+ +C+ G + +A++ + ++ +KG P +
Sbjct: 441 KMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFN 500
Query: 161 QMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISI 204
++N + K G V P++ +N+L++ C G++ N + +
Sbjct: 501 FIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKM-------ENALRV 553
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
V I + LV + +G+ D+ F E+ K P+ +Y
Sbjct: 554 FDVMVSAGIQPNVVVYGTLVNG----YCKVGRIDEGLSLFREILHKGIKPSTTLY 604
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 37/170 (21%)
Query: 56 KPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCT----------------AFNCQQ 97
K S + P TL+ ++ KHG I +A +VF+ + +
Sbjct: 311 KMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKG 370
Query: 98 CVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
C++ L F M+ G PD +L+ A+ G + A E+ ++G P V
Sbjct: 371 CLVDLTEL---FNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVV 427
Query: 158 SAKQMV----------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
+ ++ N+MI QG P + T++ LI+ C G+L
Sbjct: 428 TYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDL 477
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 26/179 (14%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR- 111
M+PD + F + II K G + +A +F+ + V++YN+L C V
Sbjct: 492 MRPD-IGCF----NFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGK 546
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M+ G P+ + LVN +C G++ E +E+ KG P
Sbjct: 547 MENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNI 606
Query: 162 MVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+++ + + G +VP F+ + E+ G+ D T I + + K DEA L
Sbjct: 607 ILHGLFQAGRTVPAKVKFHEMTES-------GIAMDRYTYSIVLGGLFKNSCSDEAILL 658
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG---------FNP 154
+L + RM G VPD ++ I++ + CS K +A E L+ +++ G +N
Sbjct: 162 ALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNT 221
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
V A + N+M+++G PDL T+N ++ +CK+
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKA 264
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 44/221 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
II+ K GLID E+F + V+ Y+S+ +C F M+ +G
Sbjct: 244 IIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEG 303
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-- 174
P+ T +L++A C +GKM EA L+ + +G +P + +++ +G + D
Sbjct: 304 VHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDAR 363
Query: 175 ----------LET----FNSLIETICKSGELGLCADVNTNKISIPAVSKEFM--IDEAFR 218
+ET +N LI CKSG + V K+ + KE M +
Sbjct: 364 DLFVSMESKGIETDAVSYNVLINGYCKSGRM-----VEAKKLYREMMCKEIMPTVITYNT 418
Query: 219 LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LL L + G+ DA+ F EM++ P Y
Sbjct: 419 LLTGLFRE--------GKVRDAWNLFGEMKVHDLTPESCTY 451
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
FV M KG D ++ +L+N +C SG+M EA++ +E+ K P V + ++ + +
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFR 425
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL 191
+G V P+ T+N L++ +CK+ L
Sbjct: 426 EGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHL 464
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 53/219 (24%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
W MK L+ T +++++ K+ + A+E+F+ + Q + ++N L
Sbjct: 433 WNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDG 492
Query: 107 VC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C F R+ +G P+ T+T++++ C SG++ A++ + +K
Sbjct: 493 LCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEK----- 547
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
G P+L TFN+L+ C++ E+ D +T I
Sbjct: 548 --------------GCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISI 593
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAF 241
+ +SK DE +R +L+ FP+ GQ +
Sbjct: 594 VVDLLSK----DEKYREYLHLLPT----FPAQGQTGRGY 624
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ +++I + K G + A +++ + V+ YN+L R M
Sbjct: 380 SYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEM 439
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
P+ T+ IL++ C + + EA E L + F P ++
Sbjct: 440 KVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKI 499
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+++ N++ +G P++ T+ +I +CKSG+L
Sbjct: 500 EIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQL 534
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+ RM G PD T IL+N +C+ K+ L E+ +G +P
Sbjct: 115 YKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCL 174
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A ++ KM++ G P++ T+ +L+ +C +G
Sbjct: 175 GSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTG 211
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 40/179 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+R+G P+ T T LV C ++ EA L+++ G+ P V + ++N + G+
Sbjct: 153 MLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGN 212
Query: 172 V----------------------PDLETFNSLIETICKSGEL-------------GLCAD 196
P+L + ++I+++CK G + G+ D
Sbjct: 213 TMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPD 272
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQIKTH 252
V I + + A L +V++G + P++ F+ DA C +M+ H
Sbjct: 273 VVAYSSIIHGMCHTGRWEGAKGLFNEMVDEG--VHPNVVTFNVLIDALCKAGKMEEANH 329
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T ++II + G +D+A E+ N+ +++ Q ++ Y ++ V F M
Sbjct: 224 TYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEM 283
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ K VP++ T +LV +C G + A + LQ++S G P ++N + KQG V
Sbjct: 284 VDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRV 343
Query: 173 ----------------PDLETFNSLIETICKSG 189
PD ++ +++ +C++G
Sbjct: 344 DDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAG 376
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 100/255 (39%), Gaps = 75/255 (29%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K IELM SV T + ++ F G +D+A+E+FN C+
Sbjct: 418 KLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNN---LPCE------------- 461
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL-------------------SDK 150
P+ T+T L+ C + ++ A E L E+ K
Sbjct: 462 ---------PNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQK 512
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI---CKSGEL----------GLCADV 197
GF V A ++VN+M++ G P+L TFN+L++ I C S E G+ D
Sbjct: 513 GF---VEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDT 569
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFF 244
T + +S+E +EA ++L + + G + P +G + D A FF
Sbjct: 570 ITYSSVVDVLSREDRTEEAIQMLHAVQDMGMR--PKVGMYNKILFALCKRCETDQAIDFF 627
Query: 245 SEMQIKTHPPNRPVY 259
+ M PN Y
Sbjct: 628 AYMVSNGCMPNESTY 642
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+++G P T+T+L+ A C S EA L E+ KG P + + ++N M ++G
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237
Query: 172 V----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
V PD+ ++ ++++ +C + + + V E D
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297
Query: 216 AFRLLC--NLVEDG---------HKLFPSL-------------GQFDDAFCFFSEMQIKT 251
R C +VE H P+ G+ DDA+ F + M +
Sbjct: 298 LVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG 357
Query: 252 HPPNRPVY 259
P+ Y
Sbjct: 358 CNPDTISY 365
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 62/229 (27%)
Query: 48 MWKTIELMKPDSL-------SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
MWK ++ L + P T++ +I+ +GK G +D+ V F + + +C+
Sbjct: 143 MWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPD 202
Query: 99 VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
V+ YNSL +N +C SGK+ + EF +E+ G P V S
Sbjct: 203 VITYNSL----------------------INCFCKSGKLPKGLEFYREMKQSGLKPNVVS 240
Query: 159 AKQMVNKMIKQ----------------GSVPDLETFNSLIETICKSG------------- 189
+V+ K+ G VP+ T+ SL++ CK G
Sbjct: 241 YSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEML 300
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
E+G+ +V T I + + EA +L +V G + P+L ++
Sbjct: 301 EVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAG--VIPNLASYN 347
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 34/213 (15%)
Query: 62 VFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC----------- 108
VFP+T S ++ +F K G D F + V YN + C
Sbjct: 94 VFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAAR 153
Query: 109 --FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
F M +G +PD T+ +++ + G++ + F +E+ P V + ++N
Sbjct: 154 GLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCF 213
Query: 167 IKQGSVP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
K G +P LE + + ++ GL +V + + A KE M+ +A + ++
Sbjct: 214 CKSGKLPKGLEFYREMKQS-------GLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRR 266
Query: 226 DGHK----LFPSL-------GQFDDAFCFFSEM 247
GH + SL G DAF +EM
Sbjct: 267 VGHVPNEFTYTSLVDANCKIGNLSDAFRLANEM 299
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F +M+ G +P+ ++ L++ + + M A E L EL +G P
Sbjct: 331 FGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCG 390
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ +AK ++N+M + G + + +L++ KSG
Sbjct: 391 LEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSG 427
>gi|255583549|ref|XP_002532531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527743|gb|EEF29847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 212
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 34/165 (20%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
KPD + T + +I+ + K G +++A+E+ N + ++ + ++ +C
Sbjct: 17 KPDKI-----TYTTLIDGYCKEGDLESALEIRNIMIKEGVELDIVAFTAIISGLCKEGKV 71
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
M++ GF PD T+T++++ +C G M+ + L+E+ G P V
Sbjct: 72 IDAERALREMLKAGFKPDDATYTMVMDGFCKKGDMKTGFKLLKEMQSDGHVPGVVTYNVL 131
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++A +++ M+ G VPD T+N L+E CK G L
Sbjct: 132 MNGYCKQSQMKNANMLLDAMMNLGVVPDDITYNILLEGHCKHGNL 176
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 31/157 (19%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFV 110
+T +++++ GK G + A V + V YN+L HV F
Sbjct: 518 RTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHV-FN 576
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M G PD T+TIL+N +C S + EA +E+ K P + +V+ + K G
Sbjct: 577 AMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSG 636
Query: 171 SV----------------PDLETFNSLIETICKSGEL 191
+ D+ T+NSLI+ +CK+G L
Sbjct: 637 RISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHL 673
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 29/140 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KG D T++ L+ +C GK++EA L E+ K NP VR+ +V+ + K
Sbjct: 470 FSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGK 529
Query: 169 QGSV----------------PDLETFNSLIETICKSGE-------------LGLCADVNT 199
+G V PD+ T+N+L+ E +G+ DV+T
Sbjct: 530 EGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHT 589
Query: 200 NKISIPAVSKEFMIDEAFRL 219
I I K M+DEA L
Sbjct: 590 YTILINGFCKSKMVDEALNL 609
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 28/180 (15%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
+W I+ M+ T + +I+ K+G +D A+ +FNK
Sbjct: 641 VWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNK------------------ 682
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
M +G P+ T TIL++ C G++++AQE Q+L KG++ V M+
Sbjct: 683 ----MKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHC 738
Query: 168 KQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
KQG + + T S +E E G + T I I A+ K+ D+A +LL ++ G
Sbjct: 739 KQGLLEEALTMLSKME------ENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+++++G+ PD T L+ C G+++EA F +L +GF S ++N + +
Sbjct: 51 LTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCR 110
Query: 169 QGSV----------------PDLETFNSLIETICK----SGELGLCADVNTNKISIPAVS 208
G P++E +N++I+ +CK S GL +++ IS V+
Sbjct: 111 IGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVT 170
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+I F +G+ +A + M +KT PN Y
Sbjct: 171 YSTLIYG---------------FCIVGKLKEALGLLNVMVLKTINPNVCTY 206
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 9/177 (5%)
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
VE++N C+ L + + F M KG + T++ L+ +C GK++EA
Sbjct: 133 VEMYNTIIDALCKY--QLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGL 190
Query: 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS 203
L + K NP V + +V+ + K+G V + ++ +++ C + + +
Sbjct: 191 LNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFL 250
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL------FPSLGQFDDAFCFFSEMQIKTHPP 254
+ V K + A L+ + D H F + + D A F EM + PP
Sbjct: 251 VYEVKKAQHVFNAMSLM-GVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP 306
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 40/189 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
R+ KG PD T IL+N +C G++ L ++ +G+ P
Sbjct: 332 RLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKG 391
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-----------GLCADVNTNKIS 203
V+ A +K++ QG + ++ +LI +CK G+ G N S
Sbjct: 392 QVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYS 451
Query: 204 --IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIK 250
I A+ K ++ EA+ L + G F +G+ +A +EM +K
Sbjct: 452 TIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLK 511
Query: 251 THPPNRPVY 259
T P+ Y
Sbjct: 512 TINPDVRTY 520
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------- 157
HV F M G PD ++ I++N +C ++ +A +E+ F P ++
Sbjct: 259 HV-FNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSF 317
Query: 158 -------SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+A + +++ +G PDL T N LI C G++
Sbjct: 318 AKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQI 358
>gi|260780426|gb|ACX50759.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780428|gb|ACX50760.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780432|gb|ACX50762.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780434|gb|ACX50763.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780436|gb|ACX50764.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780438|gb|ACX50765.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780440|gb|ACX50766.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780442|gb|ACX50767.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780444|gb|ACX50768.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780446|gb|ACX50769.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780448|gb|ACX50770.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780450|gb|ACX50771.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780452|gb|ACX50772.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780454|gb|ACX50773.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780456|gb|ACX50774.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780458|gb|ACX50775.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780460|gb|ACX50776.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780462|gb|ACX50777.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780464|gb|ACX50778.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780466|gb|ACX50779.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780470|gb|ACX50781.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780472|gb|ACX50782.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780474|gb|ACX50783.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780476|gb|ACX50784.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780478|gb|ACX50785.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780480|gb|ACX50786.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780482|gb|ACX50787.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780486|gb|ACX50789.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780488|gb|ACX50790.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780490|gb|ACX50791.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780492|gb|ACX50792.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780494|gb|ACX50793.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780498|gb|ACX50795.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780500|gb|ACX50796.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780502|gb|ACX50797.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780504|gb|ACX50798.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CQFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 -----HKLFPSLGQFDDAFCFFSEMQ 248
F G+ D+A F M+
Sbjct: 159 CYNALIDAFTKHGKVDEAMTLFKRME 184
>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01400, mitochondrial; Flags: Precursor
gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
Length = 466
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 33/190 (17%)
Query: 33 RTLNRLNLTLISELS-MWKTIELMKPDSL-SVFPQTLS--LIIEEFGKHGLIDNAVEVFN 88
+ LNR+ L+S + K EL K L V P T S L+++ F + + A ++F
Sbjct: 155 KHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFG 214
Query: 89 KCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSG 135
K + V Y L F R M+ KGFVPD+ ++T L+N+ C
Sbjct: 215 KMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKT 274
Query: 136 KMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFN 179
++REA + L + KG NP + A+++++ M+ G P+ ++
Sbjct: 275 QLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYR 334
Query: 180 SLIETICKSG 189
+LI +C G
Sbjct: 335 TLIGGLCDQG 344
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 32/125 (25%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G +P+ R++ +L+ A+C N + A Q+ KM+++ VPD+
Sbjct: 185 GVMPNTRSYNLLMQAFC-------------------LNDDLSIAYQLFGKMLERDVVPDV 225
Query: 176 ETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+++ LI+ C+ G++ G D + + ++ ++ + EA++LLC
Sbjct: 226 DSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCR 285
Query: 223 LVEDG 227
+ G
Sbjct: 286 MKLKG 290
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 94 NCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREA 140
C ++ YN++ + F R M+ G P+ ++ L+ C G E
Sbjct: 290 GCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEG 349
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
+++L+E+ KGF+P + +V G V E ++E + K+GE +T
Sbjct: 350 KKYLEEMISKGFSPHFSVSNCLVKGFCSFGKV---EEACDVVEVVMKNGE---TLHSDTW 403
Query: 201 KISIPAVSKE 210
++ IP + E
Sbjct: 404 EMVIPLICNE 413
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 42/189 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP---------P 155
M+R+G P T IL+N C G + A + L+++ G +NP
Sbjct: 180 MVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKK 239
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS------------ 203
+ A + + KM +G PD+ T+N+L+ +CK G++ ++ N++S
Sbjct: 240 MERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVEL-LNQLSSKGCSPVLITYN 298
Query: 204 --IPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIK 250
I +SK D+A +LL + G K + SL G+ D+A FF ++++
Sbjct: 299 TVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVL 358
Query: 251 THPPNRPVY 259
PN Y
Sbjct: 359 GVKPNAITY 367
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL+ A++V K C L YN L F + M
Sbjct: 191 TFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKM 250
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+G PD T+ L+ A C GK+ A E L +LS KG +P
Sbjct: 251 TSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKT 310
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +++++M +G PD+ T++SL+ + + G++
Sbjct: 311 DQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKV 345
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 46/188 (24%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------- 164
G VPD T+ +L++ CS+G+ +A++ L ++ +G +P V + ++N
Sbjct: 149 GAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRA 208
Query: 165 -----KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
KM K G P+ ++N L+ CK ++ G D+ T + A
Sbjct: 209 IDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTA 268
Query: 207 VSKEFMIDEAFRLL-------C-------NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252
+ K+ +D A LL C N V DG +G+ D A EM+ K
Sbjct: 269 LCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDG---LSKVGKTDQAAKLLDEMRAKGL 325
Query: 253 PPNRPVYA 260
P+ Y+
Sbjct: 326 KPDIITYS 333
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ +G +PD T L+ +C GK R+A ++ + D G P V +
Sbjct: 110 MVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGR 169
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A++++ M+++G P + TFN LI +C+ G LG DV
Sbjct: 170 WMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDV 211
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVCFVR- 111
+KPD + T S ++ + G +D A++ F+ + + YN+ L +C R
Sbjct: 325 LKPDII-----TYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARK 379
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
M+++G P + ++TIL+ G +EA E L EL +G
Sbjct: 380 TDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRG 429
>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
salt-inducible-like protein (GB:AL021637) [Arabidopsis
thaliana]
Length = 991
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 33/190 (17%)
Query: 33 RTLNRLNLTLISELS-MWKTIELMKPDSL-SVFPQTLS--LIIEEFGKHGLIDNAVEVFN 88
+ LNR+ L+S + K EL K L V P T S L+++ F + + A ++F
Sbjct: 155 KHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFG 214
Query: 89 KCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSG 135
K + V Y L F R M+ KGFVPD+ ++T L+N+ C
Sbjct: 215 KMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKT 274
Query: 136 KMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFN 179
++REA + L + KG NP + A+++++ M+ G P+ ++
Sbjct: 275 QLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYR 334
Query: 180 SLIETICKSG 189
+LI +C G
Sbjct: 335 TLIGGLCDQG 344
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 32/121 (26%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G +P+ R++ +L+ A+C N + A Q+ KM+++ VPD+
Sbjct: 185 GVMPNTRSYNLLMQAFC-------------------LNDDLSIAYQLFGKMLERDVVPDV 225
Query: 176 ETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+++ LI+ C+ G++ G D + + ++ ++ + EA++LLC
Sbjct: 226 DSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCR 285
Query: 223 L 223
+
Sbjct: 286 M 286
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 94 NCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREA 140
C ++ YN++ + F R M+ G P+ ++ L+ C G E
Sbjct: 290 GCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEG 349
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+++L+E+ KGF+P + +V G V E ++E + K+GE
Sbjct: 350 KKYLEEMISKGFSPHFSVSNCLVKGFCSFGKV---EEACDVVEVVMKNGE 396
>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Glycine max]
Length = 589
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 29/178 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN-------------SLHVCFVRM 112
T + ++ K G ID +++ N +C ++ YN S + M
Sbjct: 412 TYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEM 471
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GF--NPPV 156
+ KG +PD+ TH+ L +C + ++ EA E L+E+S K G V
Sbjct: 472 VDKGIIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKV 531
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A Q+++ M+K PD +++LI+ + G L D++ I + KE M++
Sbjct: 532 DIAIQVLDLMVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLIKWKILKKEIMLN 589
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 45/173 (26%)
Query: 32 ERTLNRLNLTLISELSMWKTIELM-KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
+R +R LT+ + L I++M + + FP +LI F + GL+D A + NK
Sbjct: 138 QRLCSRGKLTVAARL-----IDVMARKSQIPHFPSCTNLI-RGFIRKGLVDEACKTLNK- 190
Query: 91 TAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
M+ G VPD T+ +++ C +G++R A + ++++S
Sbjct: 191 ---------------------MVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLS 229
Query: 151 G-------FNPPVR------SAKQMVN---KMIKQGSVPDLETFNSLIETICK 187
G +N +R + Q VN +++G P L T+ LIE +CK
Sbjct: 230 GCSPDAITYNSIIRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCK 282
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 112/292 (38%), Gaps = 63/292 (21%)
Query: 1 MTTVAAAKTSKEDYFAAVNHIANIVRHDIYAE--RTLNRLNLTLISELSMWKTIELMKPD 58
+ V A K+ + + N I +R + E +TLN++ + PD
Sbjct: 152 LIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNKM------------VMSGGVPD 199
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC---------- 108
++ T +++I K+G + +A+++ + C + YNS+ C
Sbjct: 200 TI-----TYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQA 254
Query: 109 --FVR-MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
F R +RKG P T+T+L+ C A E L++++ +G P + + +VN
Sbjct: 255 VNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNL 314
Query: 166 MIKQGSV----------------PDLETFNSLIETICKSGELGLCADV--NTNKISIPAV 207
KQG P+ T+N+LI ++ G D+ N+ S P
Sbjct: 315 TSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPT 374
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ I LL L + G D A F+S M + P+ Y
Sbjct: 375 HVTYNI-----LLNGLCKS--------GLLDRAISFYSTMVTENCSPDIITY 413
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 35/161 (21%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMV 163
D+ T+ ++ CS GK+ A + ++ K P V A + +
Sbjct: 129 DEMTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTL 188
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRL 219
NKM+ G VPD T+N +I +CK+G L L D++ + S A++ +I F
Sbjct: 189 NKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLF-- 246
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G F+ A F+ + K PP Y
Sbjct: 247 -------------DKGNFNQAVNFWRDQLRKGCPPYLITYT 274
>gi|341605731|gb|AEK82968.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605733|gb|AEK82969.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605735|gb|AEK82970.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRXN--GXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 32/138 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I FG+ GL+D A E+F + +C+ V+ YNS+ H+ F M
Sbjct: 462 TYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDM 521
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG+ PD T++IL+ + S K V A + ++M+ QG +
Sbjct: 522 QEKGYDPDVFTYSILIECFGKSNK-------------------VDMACSLFDEMVAQGCI 562
Query: 173 PDLETFNSLIETICKSGE 190
P++ T+N L++ + + G+
Sbjct: 563 PNIVTYNILLDCLERRGK 580
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G VPD T+ I+++++ G + +A E +E+ D P V + M+N + K G
Sbjct: 451 MRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNG- 509
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
DL+ + L + + E G DV T I I K +D A L +V G
Sbjct: 510 --DLDEAHMLFKDM---QEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQG 560
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
H F RM D+ ++ A C++ K EA + L + +KG V + +
Sbjct: 375 HSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSA 434
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ G + + +SL +T+ + G+ DV T I I + + ++D+A L + E
Sbjct: 435 L---GKLKQVSFMSSLYDTMRAN---GVVPDVFTYNIMISSFGRVGLVDKASELFEEM-E 487
Query: 226 DG---------HKLFPSLGQ---FDDAFCFFSEMQIKTHPPNRPVYA 260
DG + + LG+ D+A F +MQ K + P+ Y+
Sbjct: 488 DGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYS 534
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ +M RKG+ D + +L+NA +G + +A + +++ +P + ++ K
Sbjct: 206 YEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGK 265
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
G F SL+E + G + NT I A+ K M+DEA +L ++E
Sbjct: 266 AGKT---TKFVSLLEEMVSEGCVLNLIAYNT---VIEALGKNKMVDEAIFMLSKMIE 316
>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
Length = 1014
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-VRSAKQ 161
N H F M+R+ FVP T+T +++ +C + ++ +A L E+ G P + AKQ
Sbjct: 344 NHAHYVFNHMLRQTFVPSVATYTTMIDGYCRNRRIDKALSVLSEMQITGVMPSEISKAKQ 403
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++ M++ G PD+ T+++LI + ++ KIS +VS +ID
Sbjct: 404 ILKSMLEDGIDPDIVTYSALINEGMITEAEHFRQYMSRMKISFDSVSFNCIIDS------ 457
Query: 222 NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G +AF + M H PN Y
Sbjct: 458 ---------YCHRGNIVEAFTVYDAMVRYGHSPNVCTY 486
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 49/227 (21%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+T + ++ K+G +D A+++ K NC + Y L F R
Sbjct: 519 KTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIMLQM 578
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQEL-------SD------------KGF 152
M+ KG VPD +T L+N + G+++ A QE+ +D KG
Sbjct: 579 MLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGG 638
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
N + + K+M++ M + P+ ++N L+ K G+ G+ D T
Sbjct: 639 N--INTIKRMMSDMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYKYMVRKGIRPDNVT 696
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
++ I +S+ +ID A + L +V +G +FP FD FSE
Sbjct: 697 YRLLILGLSECGLIDIAVKFLEKMVLEG--IFPDRLVFDILITAFSE 741
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 102/262 (38%), Gaps = 52/262 (19%)
Query: 24 IVRHDIYAERTLNRLNLTLISELSMW----KTIELMKPDSLSVFPQTL--SLIIEEFGKH 77
+VR I + RL + +SE + K +E M + +FP L ++I F +
Sbjct: 685 MVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEG--IFPDRLVFDILITAFSEK 742
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTH 124
+ NA+++FN Y+++ H M++ G P+ +
Sbjct: 743 SKMHNALQLFNCMKWLRMSPSSKTYSAMINGLIRKNYLDQSHEVLREMLQVGLQPNHTHY 802
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIK 168
LVNA C GK+ A +E+ G P + A + + M++
Sbjct: 803 IALVNAKCRVGKIDRAFRLKEEMKALGIVPADVAESSIIRGLCKCGKLEEAVIVFSTMMR 862
Query: 169 QGSVPDLETFNSLIETICKSGELG-------------LCADVNTNKISIPAVSKEFMIDE 215
G VP + TF +L+ +CK ++ L DV + + I + K+ I +
Sbjct: 863 SGMVPTVATFTTLMHCLCKESKIADALHLKRLMESCRLKVDVVSYNVLITGLCKDKRISD 922
Query: 216 AFRLLCNLVEDGHKLFPSLGQF 237
A L + G L+P++ +
Sbjct: 923 ALDLYEEMKSKG--LWPNVTTY 942
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM + +PD+ T+ L+N + GK+ A + N M++Q
Sbjct: 317 RMRKDDLIPDECTYNTLINGFFGEGKINHAH-------------------YVFNHMLRQT 357
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
VP + T+ ++I+ C++ + V + + E I +A ++L +++EDG
Sbjct: 358 FVPSVATYTTMIDGYCRNRRIDKALSVLSEMQITGVMPSE--ISKAKQILKSMLEDG 412
>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
Length = 462
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 29/175 (16%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T +++I+ + G++D A+ +FN+ + V+ Y ++
Sbjct: 46 VDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTV 105
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G VPDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 106 IAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 165
Query: 153 NPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL 191
+ ++N + K G V PD +N L++ C G++
Sbjct: 166 RLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 220
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ + C GK++E ++ ++ KG NP V S M+N +G + D+ L+
Sbjct: 1 MGSLCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLM----- 55
Query: 188 SGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQ 236
G+ G+ D+ T + I A + M+D+A + + + G K +G+
Sbjct: 56 LGD-GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGK 114
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
DDA F++M + P++ Y
Sbjct: 115 MDDAMEKFNQMIDQGVVPDKYAY 137
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRM 112
T S+++ K+ D A+ +F + A N + ++ N++ F +
Sbjct: 289 TYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASI 348
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G VP T++I++ G + EA++ + + G P R +V +++K+ +
Sbjct: 349 SRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEI 408
Query: 173 PDLETFNSLIE 183
+ S I+
Sbjct: 409 VRAGAYLSKID 419
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G PD + +L++ +C GKM +A + G P V V +M+++G P
Sbjct: 199 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV------VGEMLQKGIKPST 252
Query: 176 ETFNSLIETICKSGE 190
+N +I+ + ++G
Sbjct: 253 ILYNIIIDGLFEAGR 267
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 42/214 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-- 110
M+ L + T + +I+ F K G +D+A+ + Q V+ YN+L C V
Sbjct: 323 MRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGR 382
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
M KG PD T++ +++A+C +G A + Q++ + G P
Sbjct: 383 MDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSS 442
Query: 156 ----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ A + MI G PD T+ SLI+ CK G + G
Sbjct: 443 LIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAG 502
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+ DV T + I +SK EA RLL L +
Sbjct: 503 VLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHE 536
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+ G P+ T+ ILV A C G +EA L+++ G +P
Sbjct: 145 FDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCR 204
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A+++V+ M + G P+L TFNS++ ICK+G +
Sbjct: 205 AGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRM 243
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 61/209 (29%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ +++M+ L T + ++ K G +++A +VF++
Sbjct: 213 RLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDE-------------------- 252
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M+++G PD ++ LV +C G EA E++ KG
Sbjct: 253 --MVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI----------------- 293
Query: 170 GSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+PD+ TF SLI +CK+G L GL ++ + + ++ +ID
Sbjct: 294 --MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG---------- 341
Query: 226 DGHKLFPSLGQFDDAFCFFSEM-QIKTHP 253
F G DDA EM Q + P
Sbjct: 342 -----FCKKGFLDDALLAVREMRQCRIQP 365
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 28/161 (17%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVF----NKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP 119
P ++I+ + + G++D A VF N + +C NSL M KG VP
Sbjct: 156 PVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRC----NSLR----SMGEKGLVP 207
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD----- 174
+ T+TI+ C + +M EA+ +E+ G P + +++ +++G + +
Sbjct: 208 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 267
Query: 175 -----------LETFNSLIETICKSGELGLCADVNTNKISI 204
L T+N LI +CK G++ A++ I++
Sbjct: 268 DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITL 308
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 41/248 (16%)
Query: 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
+L+L ++L T +KP+ + S +I + G I+ A + + +
Sbjct: 364 DLSLANKLLEKMTFSGLKPNVV-----VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPD 418
Query: 99 VLLYNSLHVCFVRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+ YN++ C + + +G PD T + + +GKM EA ++
Sbjct: 419 IFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFD 478
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISI 204
E+ D G P ++N K G++ + L F L LG+ DV T I
Sbjct: 479 EMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL-------HALGVLPDVQTCSAFI 531
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKT 251
+ K + EA ++ L E G L P + G+ + AF EM +K
Sbjct: 532 HGLLKNGRVQEALKVFSELKEKG--LVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKG 589
Query: 252 HPPNRPVY 259
PN +Y
Sbjct: 590 IAPNIFIY 597
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 104/259 (40%), Gaps = 68/259 (26%)
Query: 42 LISELSMWKTIELMKPDSLSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV 99
L+ LS+++ + +L V P QT S I K+G + A++VF++
Sbjct: 505 LMEALSIFRHLH-----ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE---------- 549
Query: 100 LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----- 154
+ KG VPD T++ L++ +C G++ +A E E+ KG P
Sbjct: 550 ------------LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 597
Query: 155 -----------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNT 199
++ A+++ + M ++G PD T++++I+ CKS + L ++ +
Sbjct: 598 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 657
Query: 200 NKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFC-------- 242
+ + KE +++A L +++ G S D +C
Sbjct: 658 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEA 717
Query: 243 --FFSEMQIKTHPPNRPVY 259
F EM K P+ Y
Sbjct: 718 SQLFQEMIAKQIMPDHVTY 736
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 33/177 (18%)
Query: 87 FNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
FN C+ C + S F MI K +PD T+T +++ C +GKM EA +E
Sbjct: 701 FNTLIDGYCKSCKIQEAS--QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 758
Query: 147 LSDK--------------GFNPPVRSAK--QMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ ++ G+N +S++ + KM+ +G PD T+ +I CK
Sbjct: 759 MQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN 818
Query: 191 L-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
L G+ + + I A+ K + EA +LL + E G K PSL
Sbjct: 819 LVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK--PSL 873
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC 108
T E M+ L S +I+ F + G ID + + + + ++ YN L +C
Sbjct: 231 TFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLC 290
Query: 109 -FVRM-----IRKGFV-----PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
F +M I KG + P+ RT +L+ +C M A E L E+ + P
Sbjct: 291 KFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAV 350
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217
S M+N + DL N L+E + S GL +V I + E I+EA
Sbjct: 351 SYGAMINGLCH---CKDLSLANKLLEKMTFS---GLKPNVVVYSTLIMGYASEGRIEEAR 404
Query: 218 RLLCNLVEDGHKLFPSLGQFDDAFCF 243
RLL DG G D FC+
Sbjct: 405 RLL-----DG---MSCSGVAPDIFCY 422
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 49/247 (19%)
Query: 41 TLISELSMWKTIE-----LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAF 93
TLI+ L K ++ L++ ++ FP T + +++ K G +D A+E+
Sbjct: 184 TLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKK 243
Query: 94 NCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140
V+LY +L C F M+ KG + T++ LV+ C G+ +EA
Sbjct: 244 GFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEA 303
Query: 141 QEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIET 184
L +++ G +P V + A ++N M+++G P T+N L+
Sbjct: 304 NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 363
Query: 185 ICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
+CK G E G ADV T + + + +DEA +L ++ ++ + L
Sbjct: 364 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 423
Query: 232 PSLGQFD 238
P++ F+
Sbjct: 424 PNVFTFN 430
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I K G + AV++ K ++ YN L + ++
Sbjct: 428 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 487
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ GFVP+ T++IL++ +C + A+ E+ G NP + ++ + K+GS+
Sbjct: 488 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 547
Query: 173 ----------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
PD+ +FN++I+ K+G E+GL D T
Sbjct: 548 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 607
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I +SK +DEA L +V G
Sbjct: 608 INRLSKLGELDEAKSALERMVASG 631
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 31/139 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ KG P T+ +L++ C G + +A + L+ + +KG V + ++ + +G
Sbjct: 345 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGK 404
Query: 172 V------------------PDLETFNSLIETICKSGEL-------------GLCADVNTN 200
V P++ TFN LI +CK G L G C ++ T
Sbjct: 405 VDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 464
Query: 201 KISIPAVSKEFMIDEAFRL 219
+ + K I EA L
Sbjct: 465 NMLLGGCLKAGKIKEAMEL 483
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 29/142 (20%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HVCFVR-----MIRKGFVPDKR 122
K G ++ A +F + NC+ ++ +N++ FV+ M+ G PD
Sbjct: 543 KEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDAL 602
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------RSAK-------QMVNKM 166
T + L+N G++ EA+ L+ + GF P S+K ++++M
Sbjct: 603 TFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQM 662
Query: 167 IKQGSVPDLETFNSLIETICKS 188
+G+V D + ++++ +C S
Sbjct: 663 AAKGTVLDRKIVSTILTCLCHS 684
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
++ +E M L++ T +++I K G + A+E+F + + V+ Y SL
Sbjct: 312 YELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 371
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F +R+G PD + L+N+ +SG + A E + E+ K P
Sbjct: 372 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 431
Query: 156 ----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A++++++M K+G PDL T+N+LI G++
Sbjct: 432 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDV 483
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 29/150 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMIRKG 116
+I G ID A E+ + + YN+L +C + M ++G
Sbjct: 403 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 462
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD T+ L++ + G +++A E+ +KGFNP + + A+
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 522
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGE 190
MV +M++ G PD T+ SLIE + E
Sbjct: 523 NMVKEMVENGITPDDSTYISLIEGLTTEDE 552
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 90/235 (38%), Gaps = 63/235 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV-PDKRTH 124
T +I + K G +D AV+VF++ M+ KG V P+ +
Sbjct: 223 TYGTVISGWCKVGRVDEAVKVFDE----------------------MLTKGEVKPEAVMY 260
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIK 168
L+ +C GK+ A + + ++G V + A ++V +M
Sbjct: 261 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 320
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G D+ T+N LI CK G + G+ A V T I A+SK+ + E
Sbjct: 321 KGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQE 380
Query: 216 AFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+L V G + L+ +L G D AF EM+ K P+ Y
Sbjct: 381 TDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 435
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 40/219 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFV------------RMIRKG 116
+I + G +D A+ ++ V YN L H F+ M KG
Sbjct: 263 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 322
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
D T+ IL+N C G +++A E + +S +G V + ++ + K+G V
Sbjct: 323 LALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD 382
Query: 173 ------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
PDL +N+LI + SG + ++ + + R L
Sbjct: 383 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 442
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C LG+ D+A EM + P+ Y
Sbjct: 443 C-----------LLGRVDEARKLIDEMTKRGIQPDLVTY 470
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMIRKG 116
II+ K L+++A + +++ A V+ YN+L +C + +MI +
Sbjct: 215 IIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILEN 274
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P T +ILV+A+C GK++EA+ + K P + + ++N V E
Sbjct: 275 INPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAE 334
Query: 177 T-FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH--KLFPS 233
+ FN++ ++G+ DV++ I I K M+DEA +L E+ H ++FP
Sbjct: 335 SIFNTM-------AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLF----EEMHCKQIFPD 383
Query: 234 LGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
+ ++ D C EM + PPN Y
Sbjct: 384 VVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITY 422
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 47/199 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK-------- 115
T S++++ F K G + A VF + + ++ YNSL C V + K
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM 340
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
G PD +++I+++ +C + EA + +E+ KQ+
Sbjct: 341 AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEM----------HCKQI---------F 381
Query: 173 PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRL 219
PD+ T+NSLI+ +CKSG + G ++ T + A+ K +D+A L
Sbjct: 382 PDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIEL 441
Query: 220 LCNLVEDGHKLFPSLGQFD 238
L L + H + PS+ ++
Sbjct: 442 LTKLKD--HNIQPSVCTYN 458
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 35/157 (22%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC---VLLYNSL--HVC----------- 108
+ S++I F K ++D A+++F + +C+Q V+ YNSL +C
Sbjct: 350 HSYSIMISGFCKIKMVDEAMKLFEE---MHCKQIFPDVVTYNSLIDGLCKSGRISYALKL 406
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
M +G P+ T+ L++A C + + +A E L +L D P V + ++N + K
Sbjct: 407 IGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCK 466
Query: 169 QGSVPDLE----------------TFNSLIETICKSG 189
G + D + T+N++I+ CK G
Sbjct: 467 SGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKG 503
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 22/107 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +++ K+ +D A+E+ K N Q V YN
Sbjct: 421 TYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYN---------------------- 458
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
IL+N C SG++++AQ+ +++ G+N V + M+ K+G V
Sbjct: 459 ILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +++KG+ PD T T L+ C G + +A F ++ GF S + ++N + K
Sbjct: 127 FSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCK 186
Query: 169 QGSVP----------------DLETFNSLIETICK 187
G D+ +N++I+ +CK
Sbjct: 187 VGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCK 221
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ +GK G ++ ++ + C+ V+ YN+L CF + M
Sbjct: 231 TYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEM 290
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
R+G + + T + V+A+C +G +REA + ++ KG P +
Sbjct: 291 KREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRL 350
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A + N+M++QG ++ T+ L++ +CK G++ DV
Sbjct: 351 DDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDV 391
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M G P+ +T +++A + K EA LQ++ D GF P + + +V+ + K G
Sbjct: 464 KMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAG 523
Query: 171 SV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
S+ P+++ + +L++ +CK+G ++ + + MID
Sbjct: 524 SIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNG-----------RLDKAVLLLDEMID 572
Query: 215 EAFRL---LCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+ L +C + DGH G DAF ++M
Sbjct: 573 KGMSLDNVVCTSLMDGHL---KQGNLQDAFALKAKM 605
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 80/232 (34%), Gaps = 52/232 (22%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
S P + ++ GL+D+AV + N + +C R
Sbjct: 125 SALPSVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWR 184
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
+ + P+ T I+++ C G + EA+ L +M G
Sbjct: 185 LFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLA-------------------RMKAIGC 225
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
PD+ T+NSLI+ K GEL G DV T + K ++ A+
Sbjct: 226 SPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYS 285
Query: 219 LLCNLVEDGHKL-FPSLGQFDDAFC----------FFSEMQIKTHPPNRPVY 259
+ +G + F DAFC F++M++K PN Y
Sbjct: 286 YFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTY 337
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 28/162 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++ K G ID A+ FNK M+ G P+ + +T
Sbjct: 511 TYCALVDGLCKAGSIDEAISHFNK----------------------MVDLGLEPNVQAYT 548
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
LV+ C +G++ +A L E+ DKG + +++ +KQG++ D +
Sbjct: 549 ALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKA----- 603
Query: 186 CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
K GL D+ + MI EA +L ++E+G
Sbjct: 604 -KMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENG 644
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
MK + + T S ++ F K+G++ A+++F +M
Sbjct: 290 MKREGVMANVVTFSTFVDAFCKNGMVREAMKLF----------------------AQMRM 327
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P++ T+T LV+ C +G++ +A E+ +G V + +V+ + K+G V +
Sbjct: 328 KGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAE 387
Query: 175 LETFNSLIE 183
E L+E
Sbjct: 388 AEDVFRLME 396
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 65 QTLSLIIEEFGKHGLIDNAV----EVFNKCTAFNCQQCVLLYNS------LHVCFV---R 111
Q + +++ K+G +D AV E+ +K + + C L + L F +
Sbjct: 545 QAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAK 604
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI G D +T V +C+ ++EA+E L E+ + G P ++NK K G+
Sbjct: 605 MINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGN 664
Query: 172 VPDLETFNSLIETI 185
+ + + +E++
Sbjct: 665 MEEAAILQNEMESL 678
>gi|341605697|gb|AEK82951.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQTCXFN-------GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMMLFKRME 184
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 60/251 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMI---------- 113
T +++I + G ++ E+FN +F C V+ YN+L +C +
Sbjct: 200 TFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEV 259
Query: 114 --RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
R PD T+T +++ + GK+ A +E+ G P V +
Sbjct: 260 QSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGN 319
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE--LGL-----------CADVNTNKI 202
A+ M KM +PD+ TF SLI+ C++G+ LGL ++ T +
Sbjct: 320 MVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSV 379
Query: 203 SIPAVSKEFMIDEAFRLLCNL--------------VEDGHKLFPSLGQFDDAFCFFSEMQ 248
I A+ K+ I EA LL L V DG F G D+A +EM+
Sbjct: 380 IINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDG---FCKAGNVDEANVIVTEME 436
Query: 249 IKTHPPNRPVY 259
K P++ +
Sbjct: 437 EKRCRPDKVTF 447
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 42/211 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM--IRKGF------ 117
T +++I+ FGK G + A + K +++C V+ + SL + R IR G
Sbjct: 306 TFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVM 365
Query: 118 -----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPP---------V 156
P+ T+++++NA C ++ EA++ L++L +NP V
Sbjct: 366 KARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNV 425
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI--- 213
A +V +M ++ PD TF LI C G + D+ ++I I
Sbjct: 426 DEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSL 485
Query: 214 ----------DEAFRLLCNLVEDGHKLFPSL 234
EAF ++ ED + F SL
Sbjct: 486 VACLLKAGKPSEAFHIVQTASEDLNLSFSSL 516
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 60/235 (25%)
Query: 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92
R+L ++ L + E+ I M+ D + + L ++ F + G D A ++ +
Sbjct: 101 RSLCQMGLHDLVEM----VIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQG 156
Query: 93 FNCQQCVLLYNSLHVCFVRMIRKGFV----------------PDKRTHTILVNAWCSSGK 136
+ +YN L +++ G V P+ T IL+ C G+
Sbjct: 157 EEARISSFVYNYL---LNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGE 213
Query: 137 MREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----G 192
+ +KGF ++ N M G +PD+ T+N+LI +CK+ EL
Sbjct: 214 V-----------EKGF--------ELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACD 254
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
L +V + P V I FR LG+ + A F EM
Sbjct: 255 LLKEVQSRNDCSPDVMTYTSIISGFR--------------KLGKLEAASVLFEEM 295
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 35/158 (22%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
L +W ++MK ++S T S+II K I A ++ + + +YN +
Sbjct: 359 LKVW---DVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPV 415
Query: 106 -------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+V M K PDK T TIL+ C G+M EA + +
Sbjct: 416 IDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFK------- 468
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
KM+ G PD T +SL+ + K+G+
Sbjct: 469 ------------KMLAIGCAPDNITISSLVACLLKAGK 494
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 28/180 (15%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
+W I+ M+ + T + +I+ K+G +D A+ +FNK
Sbjct: 393 VWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNK------------------ 434
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
M +G P T TIL++ C G++++AQE Q+L KG++ V M+N
Sbjct: 435 ----MKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHC 490
Query: 168 KQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
KQG + + T S +E E G + T I I A+ K+ D+A +LL ++ G
Sbjct: 491 KQGLLEEALTMLSKME------ENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRG 544
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 51/192 (26%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+ +++I F K+ ++D A+ +F + M +K VP T+
Sbjct: 340 HSYTILINGFCKNKMVDEALNLFKE----------------------MHQKNMVPGIVTY 377
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVNKMIK 168
+ L++ C SG++ + + E+ D+G N + A + NKM
Sbjct: 378 SSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKD 437
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
QG P TF L++ +CK G L G DV + I K+ +++E
Sbjct: 438 QGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEE 497
Query: 216 AFRLLCNLVEDG 227
A +L + E+G
Sbjct: 498 ALTMLSKMEENG 509
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 31/165 (18%)
Query: 84 VEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
VE++N C+ L + + F M KG D T+T L+ +C + K++EA
Sbjct: 199 VEMYNTIIDALCK--YQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGL 256
Query: 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICK 187
L E+ K NP V + +V+ + K+G V PD+ T+++L++
Sbjct: 257 LNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFL 316
Query: 188 SGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRL 219
EL G+ DV++ I I K M+DEA L
Sbjct: 317 VYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNL 361
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 17/102 (16%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
HV F M G PD ++TIL+N +C + + EA +E+ K P + + +++
Sbjct: 325 HV-FNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDG 383
Query: 166 MIKQGSV----------------PDLETFNSLIETICKSGEL 191
+ K G + ++ T+NSLI+ +CK+G L
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHL 425
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 84/233 (36%), Gaps = 53/233 (22%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RMIRKGFVPDKRTHTI 126
+D+AV FN+ ++ +N + F R+ KG PD T I
Sbjct: 40 VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQG 170
L+N +C G++ L ++ +G+ P V A +K++ QG
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159
Query: 171 SVPDLETFNSLIETICKSGEL-----------GLCADVNTNKIS--IPAVSKEFMIDEAF 217
D ++ +LI +CK G+ G N + I A+ K ++ EA+
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAY 219
Query: 218 RLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L + G F + +A +EM +KT PN Y
Sbjct: 220 GLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTY 272
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 110/276 (39%), Gaps = 43/276 (15%)
Query: 10 SKEDYFAAVNHIA-NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLS 68
+KE + N +A N V H + E + +L E+ T + +KPD + T +
Sbjct: 255 AKEGGACSPNVVAYNTVIHGFFKEGETGK-ACSLFHEM----TRQGVKPDVV-----TYN 304
Query: 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRK 115
LII+ K +D A V + T Q + YN + F +M +
Sbjct: 305 LIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSR 364
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G +P+ + + C G+ +EA E ++ KG P + S +++ +G D+
Sbjct: 365 GLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADM 424
Query: 176 -ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH------ 228
FNS+ G+ AD I I A +K M+D+A + + + G
Sbjct: 425 IGLFNSMKSN-------GIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVT 477
Query: 229 -----KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F +G+ DA F++M + PN VY
Sbjct: 478 YSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVY 513
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 82/278 (29%)
Query: 11 KEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLI 70
K + AA + NI+ H YA+R + + + +E+ + + PD + T S +
Sbjct: 432 KSNGIAADCRVFNILIH-AYAKRGMVDDAMLIFTEMQQ----QGVSPDVV-----TYSTV 481
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNA 130
I F + G + +A+E FN+ M+ +G P+ + ++
Sbjct: 482 ISAFSRMGRLTDAMEKFNQ----------------------MVARGIQPNTAVYHSIIQG 519
Query: 131 WCSSGKMREAQEFLQELSDKGF-NPPVRSAKQMVNKMIKQGSV----------------P 173
+C G + +A+E + E+ +KG P + ++N + K G V P
Sbjct: 520 FCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERP 579
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL----VEDGHK 229
D+ TF SLI+ C G++ D+AF++L + VE
Sbjct: 580 DVITFTSLIDGYCLVGKM----------------------DKAFKILDAMEVVGVETDIV 617
Query: 230 LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ +L G+ +D F EMQ K PN Y
Sbjct: 618 TYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYG 655
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 40/192 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F M R+G PD T+ ++++A C + M +A+ L++++ G P
Sbjct: 288 FHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYAT 347
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG---ELGLCADVNTNKISIPAV-- 207
++ A +M KM +G +P++ NS + ++CK G E D T K P +
Sbjct: 348 LGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVS 407
Query: 208 --------SKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQ 248
+ E + L ++ +G + G DDA F+EMQ
Sbjct: 408 YCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQ 467
Query: 249 IKTHPPNRPVYA 260
+ P+ Y+
Sbjct: 468 QQGVSPDVVTYS 479
>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
Length = 346
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTI 126
+D AVE+ + + V++Y+SL C FV M KG PD +T
Sbjct: 166 VDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTG 225
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
L+++ C GK ++A + + +G P V + ++N M K+GSV + I +
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKE------AIGVLK 279
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
K E G+ DV T I +S +DEA LL +V
Sbjct: 280 KMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV 317
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 43/217 (19%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107
+W+ E M + LS T +I+ + G + A E+F++
Sbjct: 166 LWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDE------------------ 207
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------- 156
M KG VP +TIL+ CS K+ EA+ + + + G P V
Sbjct: 208 ----MRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYC 263
Query: 157 -----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
+ A ++ M+ +G VPD+ TF LI+ +CK GE+ ++ N I
Sbjct: 264 KLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIA 323
Query: 212 MIDEAFRLLCNL--VEDGHKLFPSLGQFD---DAFCF 243
+ + C + V + LF L +F+ D F +
Sbjct: 324 VYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTY 360
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 35/171 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
FV MI+ P+ + L++A+C G + EA EL +P V
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVS 208
A + KM K+G + + T+NSLI+ CK G+ L +C+ + N + ++
Sbjct: 370 VSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVIT 429
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ID + + A +SEM IK+ P+ Y
Sbjct: 430 FSTLIDG---------------YCKIRNLQAAMGIYSEMVIKSLSPDVVTY 465
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 34/222 (15%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV 110
E M + + T + +I+ K G +D A+E+ ++ T + V+ +++L C +
Sbjct: 381 EKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKI 440
Query: 111 R-----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
R M+ K PD T+T +++ C G M+EA + ++ D G P +
Sbjct: 441 RNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTI 500
Query: 160 KQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLC-ADVNTNKISIPAVSKEFMIDEAF 217
+++ + K G + D LE F IE + C D +K P+++
Sbjct: 501 SCLLDGLCKDGKISDALELFTEKIEF-----QTPRCNVDAGGSK---PSLTNHVAYTALI 552
Query: 218 RLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
LC +D GQF A FS+M+ P+ +Y
Sbjct: 553 HGLC---QD--------GQFSKAVKLFSDMRRYGLQPDEVIY 583
>gi|341605693|gb|AEK82949.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGXAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Cucumis sativus]
Length = 460
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 53/238 (22%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
+P+S+S +++I+ + K G + A +F++ Q V+ YNS
Sbjct: 183 RPNSVSY-----NIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRKGEM 237
Query: 106 --HVC-FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE---------------- 146
+C F M KG P+ T+ +L+ WC GK +EA++ + +
Sbjct: 238 DTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVL 297
Query: 147 LSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKI 202
++ G + + ++N+M K+ PD+ T+N L+ +CK G++G + +
Sbjct: 298 MTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGC 357
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
A + MID CN G FD A + M + H P+ +A
Sbjct: 358 DPNAATYRMMIDG----YCN-----------AGDFDGAMKILNAMLMSGHYPHLKTFA 400
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 56/227 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNC----QQCVLLYNSLHVC---------FVRMIRKG 116
+I+ +GK L++ +E+F++ +FNC Q +L N+L C F +
Sbjct: 122 LIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMD 181
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
F P+ ++ I++ W G +A E+ +KG P V
Sbjct: 182 FRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSV-------------------V 222
Query: 177 TFNSLIETICKSGEL--GLCADVN-TNKISIP-AVSKEFMID---------EAFRLLCNL 223
T+NS + +C+ GE+ LC N T K P AV+ +++ EA +L+ ++
Sbjct: 223 TYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDM 282
Query: 224 VEDGHKLFP-----------SLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G KL P G D+ +EM+ + P+ Y
Sbjct: 283 EFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTY 329
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 32/138 (23%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FV 110
P +++ GK G ID + N+ + V+ YN L ++C V
Sbjct: 291 PVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLV 350
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M G P+ T+ ++++ +C++G A +++N M+ G
Sbjct: 351 KMQVGGCDPNAATYRMMIDGYCNAGDF-------------------DGAMKILNAMLMSG 391
Query: 171 SVPDLETFNSLIETICKS 188
P L+TF SL+ + K
Sbjct: 392 HYPHLKTFASLVVGLLKG 409
>gi|145337672|ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405
gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 458
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 23/142 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG------- 116
+++ +++ G+ G + A+ F + ++C+ V YN++ +C V +K
Sbjct: 167 SITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQM 226
Query: 117 ------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+ PD T+TIL++++C G +Q K + A +M +M+ +G
Sbjct: 227 QLPGFRYPPDTYTYTILISSYCRYG--------MQTGCRKAIRRRMWEANRMFREMLFRG 278
Query: 171 SVPDLETFNSLIETICKSGELG 192
VPD+ T+N LI+ CK+ +G
Sbjct: 279 FVPDVVTYNCLIDGCCKTNRIG 300
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+ +GFVPD T+ L++ C + ++ A E +++ KG P
Sbjct: 271 FREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSV 330
Query: 155 --PVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
+ A +M+ M K G VP T+ LI + ++ D+ + V +E+
Sbjct: 331 TNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVETRRAAEARDLVVEMVEAGLVPREY 390
Query: 212 MIDEAFRLLCN 222
++L+C+
Sbjct: 391 ----TYKLVCD 397
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 50/234 (21%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEF 74
+ A + NI+ H E + RL ++ ++ W ++P +S + ++ +
Sbjct: 132 YPASLYFFNILMHRFCKEGEM-RLAQSVFDAITKWG----LRPSVVS-----FNTLMNGY 181
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDK 121
K G +D + N A Q V Y+ L +C F M+ G VP+
Sbjct: 182 IKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNG 241
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
T T L++ C +G++ A + +++ ++GF+P V + A+ ++++
Sbjct: 242 VTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDE 301
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
M ++G PD T+ +LI+ CK G+L ++ +E MI E+ RL
Sbjct: 302 MSRKGLKPDKITYTTLIDGSCKEGDLETAFEL-----------RERMIKESIRL 344
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K+G +D A++++ + V+ YN+L + M
Sbjct: 243 TFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEM 302
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVRS 158
RKG PDK T+T L++ C G + A E + + + G R+
Sbjct: 303 SRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRA 362
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A++M+ +M++ G PD ET+ ++ CK G++
Sbjct: 363 VDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDV 397
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
M+R G PD T+T+++N +C G +++A E L+E+ G P V
Sbjct: 372 MLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCV 416
>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
Length = 626
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 44/211 (20%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKC-------TAFNCQ---QCVLLYNSLHVC---FV 110
P L+++ + K G+I F + + C +L N +H+C +
Sbjct: 182 PIIFDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLCWHVYG 241
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M R G +P+ T IL + +C G + + +FL+++ ++GF P + + ++N +G
Sbjct: 242 EMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRG 301
Query: 171 S----------------VPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+PDL ++ +L+ +CK G + GL DV +
Sbjct: 302 RLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYN 361
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
I KE + E+ LL ++ G+ +FP
Sbjct: 362 TLICGYCKEGKMLESKSLLYEMI--GNGIFP 390
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++ F K G ID + K + ++ YN+L + M
Sbjct: 254 TFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYLYRIM 313
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R+ +PD ++T L+N C G++REA + L + +G NP V S ++ K+G +
Sbjct: 314 YRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKM 373
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
LE+ + L E I G+ D T ++ I KE + A L+ L + G + P
Sbjct: 374 --LESKSLLYEMIGN----GIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISP 427
Query: 233 SLGQF 237
+ +
Sbjct: 428 DIYDY 432
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 51/134 (38%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------------- 152
H RM+ +G PD ++ L+ +C GKM E++ L E+ G
Sbjct: 342 HQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQG 401
Query: 153 ------------------------NPPVR--------------SAKQMVNKMIKQGSVPD 174
+P + +AK ++ +M ++G +P
Sbjct: 402 YRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPH 461
Query: 175 LETFNSLIETICKS 188
+E +N LIE++CK
Sbjct: 462 VEIYNKLIESLCKG 475
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 53/219 (24%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K E+M + + + +I F + G ID A+E+F
Sbjct: 245 YKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELF--------------------- 283
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+M G PD T+T+LV A+C GK EA +F +E+ + G P V +
Sbjct: 284 -FQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCK 342
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+M++ M+++G V + FN+LI+ CK G + +C + T
Sbjct: 343 VGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRT 402
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
I ++ +D A LL + E+ KL P+L ++
Sbjct: 403 YNELICGFCRKKSMDRAMALLNKMYEN--KLSPNLVTYN 439
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 93/244 (38%), Gaps = 42/244 (17%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S W+ LM D +T I+ K G ++ A +VF + + LY +L
Sbjct: 453 SAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALI 512
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H+ F RM+ +G P+ T +L++ GK+ +A + +
Sbjct: 513 DGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAK 572
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
P V + A +++MI G P++ T+ + I+ C+ G L +
Sbjct: 573 PTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRL-----L 627
Query: 198 NTNKISIPAVSKEFMIDE-AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
++ + + ++D + +L N + +GQ D AF M P+R
Sbjct: 628 EAEEMVVKIKEEGILLDSFIYDVLVN-------AYGCIGQLDSAFGVLIRMFDTGCEPSR 680
Query: 257 PVYA 260
Y+
Sbjct: 681 QTYS 684
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC 108
++ MK + + +T + +I F + +D A+ + NK ++ YN+L +C
Sbjct: 387 VLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLC 446
Query: 109 FVR-----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------- 150
R MI+ GFVPD+RT ++ C GK+ +A + + L +K
Sbjct: 447 KARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEF 506
Query: 151 -------GFNPPVR--SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
G+ + A + +M+ +G P+ TFN L++ + K G++
Sbjct: 507 LYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKV 556
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 68/232 (29%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR---------- 114
T +++IEE + D A ++ + CQ V+ Y + + R R
Sbjct: 576 HTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVK 635
Query: 115 ---KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK----------- 160
+G + D + +LVNA+ G++ A L + D G P ++
Sbjct: 636 IKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKY 695
Query: 161 -------------------------------QMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ KM++QG VP++ T++ LI+ +CK
Sbjct: 696 NKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVE 755
Query: 190 EL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
L G+ N + + + K M +EA RLL +++E H
Sbjct: 756 HLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNH 807
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 44/193 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------- 152
F +++ GF D T+T L+ +C ++ +A + + + +G
Sbjct: 213 FCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCE 272
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNT 199
+ A ++ +M + G PD+ T+ L+ C+ G E G+ +V T
Sbjct: 273 VGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYT 332
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSE 246
+ I K +DE +L ++E G L S+ G +DA C
Sbjct: 333 YTVLIDYFCKVGKMDEGMEMLSTMLEKG--LVSSVVPFNALIDGYCKRGMMEDAICVLDS 390
Query: 247 MQIKTHPPNRPVY 259
M++ PN Y
Sbjct: 391 MKLNKVCPNSRTY 403
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 79/175 (45%), Gaps = 33/175 (18%)
Query: 63 FPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HV 107
FP T +++++ K G +++A+ + + F+ + V Y L ++
Sbjct: 537 FPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANM 596
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--------------- 152
+MI G P+ T+T + A+C G++ EA+E + ++ ++G
Sbjct: 597 FLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYG 656
Query: 153 -NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC--KSGELGLCADVNTNKISI 204
+ SA ++ +M G P +T++ L++ + K + G+ D+N+ IS+
Sbjct: 657 CIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISV 711
>gi|341605791|gb|AEK82998.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGXAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CXNALIDALTKHGKVDEAMTLFKRME 184
>gi|341605703|gb|AEK82954.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605705|gb|AEK82955.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605709|gb|AEK82957.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605813|gb|AEK83009.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605815|gb|AEK83010.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605817|gb|AEK83011.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605819|gb|AEK83012.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQTCXFN-------GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMXLFKRME 184
>gi|341605773|gb|AEK82989.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGXAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALXKHGKVDEAMTLFKRME 184
>gi|297839599|ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 459
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 23/142 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG------- 116
+++ +++ G+ G + A+ F + ++C+ V YN++ +C V +K
Sbjct: 167 SITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQM 226
Query: 117 ------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+ PD T+TIL++++C G +Q K + A +M +M+ +G
Sbjct: 227 QLPGFRYPPDTYTYTILISSYCRYG--------MQTGCRKAIRRRMWEANRMFREMLFRG 278
Query: 171 SVPDLETFNSLIETICKSGELG 192
VPD+ T+N LI+ CK+ +G
Sbjct: 279 FVPDVVTYNCLIDGCCKTNRIG 300
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+ +GFVPD T+ L++ C + ++ A E +++ KG P
Sbjct: 271 FREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSV 330
Query: 155 --PVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
+ A +M+ M K G VP T+ LI + ++ D+ + V +E+
Sbjct: 331 TNEIEGAIEMMRTMKKMGHGVPGSSTYTPLIHALVETRRAAEARDLLVEMVEAGLVPREY 390
>gi|341605797|gb|AEK83001.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605799|gb|AEK83002.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605801|gb|AEK83003.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ + + ++ I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFNGXAINSXFYSSLID--GLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|341605737|gb|AEK82971.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605739|gb|AEK82972.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605741|gb|AEK82973.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRXN--GXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMXLFKRME 184
>gi|260780352|gb|ACX50722.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 99/258 (38%), Gaps = 59/258 (22%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
++ + P T + ++ + K G + A+ + VL YN+L + R
Sbjct: 377 AMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLE 436
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------- 154
M+ +G PD T+TIL+N + A+EF E+ KG P
Sbjct: 437 EARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRI 496
Query: 155 -------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
A Q+ M+ +G PD T+N +I+ +CK+G L GL
Sbjct: 497 CAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQ 556
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAF 241
D T I A + ++ EA +LL +V DG L PS+ G A+
Sbjct: 557 PDCITYTCLIHAHCERGLLSEARKLLNGMVSDG--LQPSVVTYTILIHTCCRRGNLYSAY 614
Query: 242 CFFSEMQIKTHPPNRPVY 259
+F +M PN Y
Sbjct: 615 GWFRKMLDVGIEPNEITY 632
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------- 156
++M+ G PD T+T L++A C G + EA++ L + G P V
Sbjct: 548 MKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRR 607
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTN 200
SA KM+ G P+ T+N LI +C++G E GL + T
Sbjct: 608 GNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTY 667
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I +E +A RL + ++G
Sbjct: 668 TLLIDGNCREGNWADAIRLYFEMHQNG 694
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M G +PD T+ ++N +C +G ++EA L +L G P V
Sbjct: 372 FAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCR 431
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLI 182
A+++ +M++QG PD+ T+ L+
Sbjct: 432 LGGLEEARRLKEEMVEQGCFPDVCTYTILM 461
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 29/134 (21%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ------------- 169
T+ L+ A G +++ + E+ ++G P + + +++ ++K
Sbjct: 316 TYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEM 375
Query: 170 ---GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMI 213
G +PDL T+NS++ CK+G L GL V T I + +
Sbjct: 376 RAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGL 435
Query: 214 DEAFRLLCNLVEDG 227
+EA RL +VE G
Sbjct: 436 EEARRLKEEMVEQG 449
>gi|399107194|gb|AFP20361.1| At1g03560-like protein, partial [Capsella grandiflora]
gi|399107216|gb|AFP20372.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + GL + I + K IDEA RL + E G
Sbjct: 108 ALDYFQTCXFN-------GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMXLFKRME 186
>gi|260780468|gb|ACX50780.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780484|gb|ACX50788.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKRIQVPPHAFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CQFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 -----HKLFPSLGQFDDAFCFFSEMQ 248
F G+ D+A F M+
Sbjct: 159 CYNALIDAFTKHGKVDEAMTLFKRME 184
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 412
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M +G +P+ +++ LV+ +C +GK+ E++ E+ D+G P
Sbjct: 85 FEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCK 144
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V AK+++ I++G + DL T+NSLI+ CK G+L
Sbjct: 145 EGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDL 183
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 41/161 (25%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K +MK +SV + ++ K+G++ A+E+FN+ ++N
Sbjct: 258 KLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYN--------------- 302
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----- 164
F D +++ L++ C +GK+ A EF ++LS +G P V + M++
Sbjct: 303 -------FKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRV 355
Query: 165 --------------KMIKQGSVPDLETFNSLIETICKSGEL 191
KM + G PD+ T+N+L+ C+S +L
Sbjct: 356 EQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKL 396
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F+ M KG ++ ++TIL+N +C K+ EA E+ G P V++ ++ +++
Sbjct: 190 FLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQ 249
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G V D N L + S G+ D I + + K ++ EA L L
Sbjct: 250 TGKVGDA---NKLFGVMKAS---GISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNF 303
Query: 229 KL-FPSLGQFDDAFC----------FFSEMQIKTHPPN 255
KL F S + D C FF ++ + PN
Sbjct: 304 KLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPN 341
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQ-EFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++R+G++PD T+ L+ C ++ A + L G AK++ +M QG
Sbjct: 36 ILRRGYIPDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHED---EAKEIFEEMKAQG 92
Query: 171 SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
+P++ +++SL+ C +G+L G+ ++ + I + KE + EA
Sbjct: 93 MIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAK 152
Query: 218 RLLCNLVEDGHKL-FPSLGQFDDAFCFFSEM 247
+LL ++ G L + D FC ++
Sbjct: 153 KLLEVTIQRGIILDLVTYNSLIDGFCKIGDL 183
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 53/243 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKG 116
+I K G A+++ + Q V++YN++ +C V+ M+ KG
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 242
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
PD T+ L++ +C GKM++A + ++ + NP V + AK
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAK 302
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
++ M+KQG PD+ T+NSL++ C E+ G+ ++++ I I
Sbjct: 303 NVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGF 362
Query: 208 SKEFMIDEAFRLL----CNLVEDGHKLFPS-------LGQFDDAFCFFSEMQIKTHPPNR 256
K +DEA L CN + + S LG+ A EM + P ++
Sbjct: 363 CKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDK 422
Query: 257 PVY 259
Y
Sbjct: 423 ITY 425
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------R 111
+ S++I F K +D A+ +F + N V+ YNSL +C +
Sbjct: 353 HSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDE 412
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +G DK T+ +++A C + ++ +A L ++ D+G P + + +V+ + K G
Sbjct: 413 MHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGR 472
Query: 172 VPDLE-TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ D F L+ G DVN I + DE+ LL + E+G
Sbjct: 473 LEDARIVFEDLLVK-------GYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENG 522
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 42/223 (18%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
S ++ ++ MK S T +++I G++D+A+E N+ NC+ V+ Y L
Sbjct: 144 SAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILI 203
Query: 107 VCFV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ M+ PD T+ ++ C G + A + + +S KG+
Sbjct: 204 EATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYA 263
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGL 193
P V + ++++ M+ +G ++ T++ LI ++C+ G+ +GL
Sbjct: 264 PDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGL 323
Query: 194 CADVNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDG 227
D+ + I A+ KE +D A +L ++ DG
Sbjct: 324 LKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDG 366
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + II + G +D A ++ + ++ V+ YN L + M
Sbjct: 233 TYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDM 292
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ +G + T+++L+++ C GK+ E L+++ KG P V
Sbjct: 293 VARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRV 352
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A ++++ MI G VPD+ +N+++ +CK
Sbjct: 353 DLAIEVLDVMISDGCVPDIVNYNTILACLCK 383
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 81/235 (34%), Gaps = 78/235 (33%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+KPD P +I K G +D A+EV + MI
Sbjct: 332 LKPDGYCYDP-----LIAALCKEGRVDLAIEVLDV----------------------MIS 364
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
G VPD + ++ C + EA ++L + G +P S
Sbjct: 365 DGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVR 424
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
A M+ +M+ +G PD T+NSLI +C+ G M+DEA
Sbjct: 425 ALGMILEMLDKGVDPDGITYNSLISCLCRDG----------------------MVDEAIE 462
Query: 219 LLCNLVEDGHKLFPSLGQFD-------------DAFCFFSEMQIKTHPPNRPVYA 260
LL ++ + + PS+ ++ DA + M K PN Y
Sbjct: 463 LLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYT 517
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 32/174 (18%)
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------VRMIRKGFVPDKRTHTIL 127
D A+ +F K C YNS+ + M+ KG PD T+ L
Sbjct: 388 DEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSL 447
Query: 128 VNAWCSSGKMREAQEFL--QELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
++ C G + EA E L E+ P V S A +++ M+ +
Sbjct: 448 ISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDK 507
Query: 170 GSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
G P+ T+ LIE I G L D+ T +++ A+S E + ++ C L
Sbjct: 508 GCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDAIS-EHSFERLYKTFCKL 560
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 44/193 (22%)
Query: 109 FVR-MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG------FNP------- 154
F+R ++ KG PD T L++ +S + +A + + L + G +N
Sbjct: 79 FLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITGFCR 138
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD-------------VNT 199
+ SA Q++++M +G PD+ T+N LI ++C G L + V T
Sbjct: 139 ANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVT 198
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSE 246
I I A + IDEA +LL ++E L P + G D AF S
Sbjct: 199 YTILIEATLLQGGIDEAMKLLDEMLE--INLQPDMFTYNSIIRGMCREGYVDRAFQIISS 256
Query: 247 MQIKTHPPNRPVY 259
+ K + P+ Y
Sbjct: 257 ISSKGYAPDVITY 269
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 49/247 (19%)
Query: 41 TLISELSMWKTIE-----LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAF 93
TLI+ L K ++ L++ ++ FP T + +++ K G +D A+E+
Sbjct: 38 TLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKK 97
Query: 94 NCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140
V+LY +L C F M+ KG + T++ LV+ C G+ +EA
Sbjct: 98 GFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEA 157
Query: 141 QEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIET 184
L +++ G +P V + A ++N M+++G P T+N L+
Sbjct: 158 NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 217
Query: 185 ICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
+CK G E G ADV T + + + +DEA +L ++ ++ + L
Sbjct: 218 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 277
Query: 232 PSLGQFD 238
P++ F+
Sbjct: 278 PNVFTFN 284
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 29/141 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV--- 172
GFVP+ T++IL++ +C + A+ E+ G NP + ++ + K+GS+
Sbjct: 345 GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQA 404
Query: 173 -------------PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
PD+ +FN++I+ K+G E+GL D T I
Sbjct: 405 KSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINR 464
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
+SK +DEA L +V G
Sbjct: 465 LSKLGELDEAKSALERMVASG 485
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 48/192 (25%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ KG P T+ +L++ C G + +A + L+ + +KG V + ++ + +G
Sbjct: 199 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGK 258
Query: 172 V------------------PDLETFNSLIETICKSGEL-------------GLCADVNTN 200
V P++ TFN LI +CK G L G C ++ T
Sbjct: 259 VDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 318
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEM 247
+ + K I EA L +++ G P+ + D FC F EM
Sbjct: 319 NMLLGGCLKAGKIKEAMELWKQVLDLG--FVPNSFTYSILIDGFCKMRMLNIAKGLFCEM 376
Query: 248 QIKTHPPNRPVY 259
+TH N ++
Sbjct: 377 --RTHGLNPALF 386
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 29/142 (20%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HVCFVR-----MIRKGFVPDKR 122
K G ++ A +F + NC+ ++ +N++ FV+ M+ G PD
Sbjct: 397 KEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDAL 456
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------RSAK-------QMVNKM 166
T + L+N G++ EA+ L+ + GF P S+K ++++M
Sbjct: 457 TFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQM 516
Query: 167 IKQGSVPDLETFNSLIETICKS 188
+G+V D + ++++ +C S
Sbjct: 517 AAKGTVLDRKIVSTILTCLCHS 538
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 50/233 (21%)
Query: 63 FPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
FP + S ++ K D + K + YN L CF R
Sbjct: 75 FPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALA 134
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------- 154
M++ G+ PD T L+N +C ++ +A + ++ + G+ P
Sbjct: 135 LLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLF 194
Query: 155 ---PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAV 207
A ++++M+++G PDL T+ +++ +CK G+ L L + KI V
Sbjct: 195 LHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVV 254
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID LC + DDA F+EM+ K PN Y+
Sbjct: 255 IYSTVIDS----LCKYRHE-----------DDALNLFTEMENKGVRPNVITYS 292
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S +I+ F K G + A +++ + + + Y+SL F M
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELM 384
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG---------------FNPPVR 157
IRK +P+ T+ L+N +C + ++ + E +E+S +G F
Sbjct: 385 IRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDC 444
Query: 158 SAKQMVNK-MIKQGSVPDLETFNSLIETICKSGELG 192
QMV K M+ G P++ T+N L++ +CK+G+L
Sbjct: 445 DNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLA 480
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++ K G D A+ + NK A + V++Y+++ +C F M
Sbjct: 220 TYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 279
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG P+ T++ L++ C+ G+ +A L ++ ++ NP + + +++ +K+G +
Sbjct: 280 ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL 339
Query: 173 ----------------PDLETFNSLIETICKSGELG 192
P++ T++SLI C LG
Sbjct: 340 VKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 30/125 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
+ E + GL+ N V F + C ++ + F +M+ G P+ T+ IL+
Sbjct: 415 LFREMSQRGLVGNTVTYTTLIHGFFQARDC----DNAQMVFKQMVSVGVHPNILTYNILL 470
Query: 129 NAWCSSGKMREAQ---EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
+ C +GK+ +A E+LQ RS + PD+ T+N +IE +
Sbjct: 471 DGLCKNGKLAKAMVVFEYLQ-----------RSTME-----------PDIYTYNIMIEGM 508
Query: 186 CKSGE 190
CK+G+
Sbjct: 509 CKAGK 513
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVCFVR------------M 112
T + +I+ + G +D A ++ + ++ YN +H F+ M
Sbjct: 323 TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEM 382
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
KG +PD TH IL+N +C G + A L E+ KG P +
Sbjct: 383 REKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRM 442
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
+ A + +K+ ++G +PD+ FN+LI+ C +G + + D T
Sbjct: 443 KEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTL 502
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTH 252
+ +E ++EA +LL + G K + G DAF EM
Sbjct: 503 MQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGF 562
Query: 253 PPNRPVY 259
P Y
Sbjct: 563 DPTILTY 569
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 70/188 (37%), Gaps = 59/188 (31%)
Query: 95 CQQCVLLYNSLH------VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
C Q + L+ L+ V + M R T I++N C GK+++A+EF+ +
Sbjct: 184 CNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHME 243
Query: 149 DKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
G P V + A+ + M +G PD T+NS I +CK G L
Sbjct: 244 TLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRL- 302
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDD 239
+EA L+C ++E G L P+ G D
Sbjct: 303 ---------------------EEASGLICKMLEGG--LVPNAVTYNALIDGYCNKGDLDK 339
Query: 240 AFCFFSEM 247
A+ + EM
Sbjct: 340 AYAYRDEM 347
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF------ 117
T + +I GK + A +F+K ++++N+L C I + F
Sbjct: 428 TYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM 487
Query: 118 -----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+PD+ T+ L+ +C GK+ EA++ L E+ +G P +
Sbjct: 488 DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A ++ ++M+ G P + T+N+LI+ +CK+ E
Sbjct: 548 KDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQE 581
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSA 159
G P+ T+ +++ C GK + A+ Q + DKG P + A
Sbjct: 246 GVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEA 305
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
++ KM++ G VP+ T+N+LI+ C G+L G+ A + T + I A
Sbjct: 306 SGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHA 365
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
+ E + +A ++ + E G
Sbjct: 366 LFMEGRMGDADNMIKEMREKG 386
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 46/216 (21%)
Query: 86 VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+N + C++ L S +C +M+ G VP+ T+ L++ +C+ G + +A +
Sbjct: 288 TYNSFISGLCKEGRLEEASGLIC--KMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRD 345
Query: 146 ELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
E+ KG + + A M+ +M ++G +PD T N LI C+ G
Sbjct: 346 EMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCG 405
Query: 190 E----LGLCADVNTNKIS---------IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-- 234
+ GL ++ I I + K + EA L + ++G L P +
Sbjct: 406 DAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEG--LLPDIIV 463
Query: 235 -----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G D AF EM P+ Y
Sbjct: 464 FNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITY 499
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 29/145 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
+I+ +G ID A ++ + + YN+L + R M R+G
Sbjct: 467 LIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRG 526
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD ++ L++ + G M++A E+ GF+P + + A+
Sbjct: 527 IKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAE 586
Query: 161 QMVNKMIKQGSVPDLETFNSLIETI 185
+++ +M+ +G PD T+ S+IE +
Sbjct: 587 ELLKEMVSKGITPDDSTYLSIIEAM 611
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 34/166 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
M PD++ T +++I + + G A + ++ Q ++ Y SL
Sbjct: 387 MMPDAV-----THNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNR 441
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
F ++ ++G +PD L++ C++G + A + L+E+ + P
Sbjct: 442 MKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNT 501
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A+Q++++M ++G PD ++N+LI K G++
Sbjct: 502 LMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQ 169
+LV A+C K EA E + +KGF P + + QM++ +M +
Sbjct: 151 LLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRM 210
Query: 170 GSVPDLETFNSLIETICKSGEL 191
L TFN +I +CK G+L
Sbjct: 211 NIRSSLYTFNIMINVLCKEGKL 232
>gi|341605747|gb|AEK82976.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605749|gb|AEK82977.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605751|gb|AEK82978.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 40/176 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M G VPD T+ IL+N +C G ++A E+ KG P +
Sbjct: 402 MGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNR 461
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVS--- 208
++A + K+I++G+ PDL FN+LI+ C +G L L +++ I V+
Sbjct: 462 MKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNT 521
Query: 209 ------KEFMIDEAFRLLCNLVEDG----HKLFPSL-------GQFDDAFCFFSEM 247
+E ++EA LL + G H + +L G +DAF EM
Sbjct: 522 LMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEM 577
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 90/237 (37%), Gaps = 40/237 (16%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV- 110
+++MK + T +I K G ++ A + K + YN+L +
Sbjct: 294 LDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCN 353
Query: 111 ------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--- 155
M+R+ +P T+ +L++A GKM EA ++++ D G P
Sbjct: 354 KGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSIT 413
Query: 156 -------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
+ A + ++MI +G P L T+ SLI + K + D+ KI
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDL-FEKI 472
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
S + ++ N + DGH + G D AF EM + P+ Y
Sbjct: 473 IREGASPDL-------IMFNALIDGH---CANGNLDRAFALLKEMDKRNIVPDEVTY 519
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 16/102 (15%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M ++ VPD+ T+ L+ C GK+ EA+E L+E+ +G P S +++ K+G
Sbjct: 507 MDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGD 566
Query: 172 V----------------PDLETFNSLIETICKSGELGLCADV 197
+ P L T+N+LI+ +CK+ + L ++
Sbjct: 567 INDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEEL 608
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 29/140 (20%)
Query: 81 DNAVEVFN---------KCTAFNCQQCVLL----YNSLHVCFVRMIRKGFVPDKRTHTIL 127
D+A E F+ K FN + L ++ V + M R T I+
Sbjct: 183 DDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIM 242
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGS 171
+N C GK+++A++F+ + + G P V A+ +++ M +G
Sbjct: 243 INVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGV 302
Query: 172 VPDLETFNSLIETICKSGEL 191
PD T+ SLI +CK G+L
Sbjct: 303 EPDSYTYGSLISGMCKGGKL 322
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M R+G PD ++ L++ + G + +A E+ GFNP + +
Sbjct: 542 MKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQ 601
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICK 187
A++++ +M+ +G PD T+ SLIE I K
Sbjct: 602 GDLAEELLKEMVSKGITPDDSTYFSLIEGIGK 633
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 30/192 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+I+E + G + + ++K F C + + F M G PD T+TIL++
Sbjct: 275 LIKEMMRKGFVPD-TSTYSKVITFLCHATKV--EKAFLLFQEMKMVGVTPDVYTYTILID 331
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------AKQ------MVNKMIKQGSVP 173
++C +G + +AQ +E+ G +P V + AKQ + ++M+ G P
Sbjct: 332 SFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP 391
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
+ T+ +L++ +CK+G + +V I + D F C ED H L P+
Sbjct: 392 NDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA-----DSDFYFPC---EDRHTLAPN 443
Query: 234 L---GQFDDAFC 242
+ G D C
Sbjct: 444 VVTYGALVDGLC 455
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 49/226 (21%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K + LM+ S T + +I+ GK G ID ++++F +
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ-------------------- 609
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD--------------KGFNPP 155
M RKG P+ T+ +L+N C++G + +A+ L E+ +GF+
Sbjct: 610 --MSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 667
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK--EFMI 213
++ ++ +M G+VP + LI+ K+G L + +++ + +P+ K M
Sbjct: 668 FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMY 727
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ LC Q ++AF +SEM + P V+
Sbjct: 728 ASLIQALC-----------LASQVEEAFRLYSEMTRRGFVPELSVF 762
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 35/168 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G P+ + L++ +C +GK+ AQE +++ G+ P V + ++++M K G
Sbjct: 470 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGR 529
Query: 172 V----------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
+ P++ T+ ++I+ +C+ GE L L + + S V+
Sbjct: 530 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 589
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ID G+ D + F++M K PN Y
Sbjct: 590 LIDG---------------LGKAGKIDLSLDLFTQMSRKGCSPNYVTY 622
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ F K G ID+A EVF + T V Y SL +M++
Sbjct: 485 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 544
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------ 164
P+ T+T +++ C G+ +A + L + +KG +P V + +++
Sbjct: 545 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604
Query: 165 ----KMIKQGSVPDLETFNSLIETICKSGEL 191
+M ++G P+ T+ LI +C +G L
Sbjct: 605 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 635
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 585
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
P+ ++ I+++ C GK +EA+ E+ D+G P V + AK+
Sbjct: 235 PNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKF 294
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+ M+ +G VPDL TF SLIE C G+L G DV + + I K
Sbjct: 295 LETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCK 354
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
F ++EA +L ++ G +P + F
Sbjct: 355 TFNVEEAMKLYNEMLRVGK--WPDMKTF 380
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 57 PDSLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
P +++ P S +II+E K G A +FN+ + V+ +++L +
Sbjct: 228 PYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGM 287
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
M+ +G VPD T T L+ +C G + A+E + KG+ P V S
Sbjct: 288 VIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTV 347
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
A ++ N+M++ G PD++TF L++ + +G++G
Sbjct: 348 LIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVG 394
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREA----QEFLQELSDKGFN--PPV------ 156
F+RM + G P+ T+ L+ C +G + A QE L S N P +
Sbjct: 184 FIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNII 243
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ AK++ N+M+ QG PD+ TF++LI+T+CK G
Sbjct: 244 IDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEG 286
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 42/181 (23%)
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
+I V ++ C FN ++ + LYN M+R G PD +T +L+ +GK+
Sbjct: 342 VISYTVLIYGYCKTFNVEEAMKLYN-------EMLRVGKWPDMKTFCVLLKGLFLAGKVG 394
Query: 139 EAQE-------------------FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179
+A++ FL L G + A ++ N++ D+E+FN
Sbjct: 395 DAKKLFGVVKPHAVPKNLYICSVFLDGLCKNG---CLFEAMELFNELKSYNMKLDIESFN 451
Query: 180 SLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
LI+ +CK+ +L GL DV T I I K +D A L + E+
Sbjct: 452 CLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEEN 511
Query: 227 G 227
G
Sbjct: 512 G 512
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 40/174 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
++R+G++PD T+T L+ C ++ EA + G P V + ++ + + G+
Sbjct: 152 IMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGN 211
Query: 172 V----------------------PDLETFNSLIETICKSGEL-------------GLCAD 196
+ P++ ++N +I+ +CK G+ G+ D
Sbjct: 212 INLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPD 271
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEM 247
V T I + KE M+ EA + L ++ G + P L F + FC ++
Sbjct: 272 VVTFSALIDTLCKEGMVIEAKKFLETMMLRG--IVPDLFTFTSLIEGFCLVGDL 323
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
Y+ + + +M G P+ T IL+N C+ ++RE + + +G+ P V +
Sbjct: 107 YSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTS 166
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A ++ +M K G P++ T+ +LI+ +C++G + L
Sbjct: 167 LIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINL 214
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
K ++KP ++ S+ ++ K+G + A+E+FN+ ++N + + +N L +
Sbjct: 398 KLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGL 457
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
C F ++ ++G PD T+ I++N +C +G++ A Q + + G P +
Sbjct: 458 CKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNL 517
Query: 157 RSAKQMVNKMIKQGSVPDL 175
+ +++ K + ++
Sbjct: 518 LTYSALLHGFYKNNKLEEV 536
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 91/238 (38%), Gaps = 34/238 (14%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
+W +E M+ L + T LI+ + + + AVE F K + F + + YN L
Sbjct: 184 VWSLVETMRCRGL-LSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLID 242
Query: 106 -----------HVCFVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ M RKG FVPD +T+T+L+ W + + QE+ D G
Sbjct: 243 TLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIR 302
Query: 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
P V + +++ K G + ++ F + + C C +N + E
Sbjct: 303 PDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLIN-------GLGSEER 355
Query: 213 IDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+DEA + + G + + +F+ AF EM+ PN Y
Sbjct: 356 LDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTY 413
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 13/153 (8%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K ++ M+ + +T +I+ K + A VF + C+ + Y +
Sbjct: 395 FKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGM 454
Query: 109 FV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F +M +G +P + L+N C ++ EA + QE+ DKG PP
Sbjct: 455 FCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPP 514
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+ + +++ G + + S ++ I K+
Sbjct: 515 GQLFSNLKEALVEGGRISLAQEMASKLDAIRKT 547
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 36/173 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-----QCVLLYNSLHV-- 107
++PD ++ ++I F K G D A++VF + A C C+L+ N L
Sbjct: 301 IRPDVVA-----YGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLI-NGLGSEE 354
Query: 108 -------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
F + + GF + T +V A+C + K A + + E+ + P R+
Sbjct: 355 RLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYD 414
Query: 161 QMVNKMIKQ----------------GSVPDLETFNSLIETICKSGELGLCADV 197
+++ +IK G P L T+ ++ C +G + + +V
Sbjct: 415 VILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNV 467
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 102/285 (35%), Gaps = 92/285 (32%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+ ++++ + + G + +A VF++ Q V+ +N+L +
Sbjct: 115 RQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGL 174
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------- 154
M + G PD T+ + C +G++++A E +E+ ++G NP
Sbjct: 175 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 234
Query: 155 ----------------------------------PVRSAKQMVNKMIKQGSVPDLETFNS 180
+++A +V +M K G PD T+ +
Sbjct: 235 VTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 294
Query: 181 LIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
LI+ CK GEL G+ D T I +SK +A R+LC ++E G
Sbjct: 295 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 354
Query: 228 HKLFPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
L P + DAFC EMQ K P Y
Sbjct: 355 --LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTY 397
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E M+ D L T + +I+ K G +D A+E+ + + + Y +L
Sbjct: 277 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 336
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
M+ G PD T+T++++A+C +G ++ + L+E+ +KG NP +
Sbjct: 337 AGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT 396
Query: 157 --------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++A ++N M+ G P+ T+N L++ CK G++
Sbjct: 397 YNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKV 445
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 139 EAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------- 191
EA++F + D + + SA+ + ++M+++G P + TFN+L+ +CK+ +L
Sbjct: 113 EARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALR 172
Query: 192 ------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G+ DV T I + K I +A + + E G
Sbjct: 173 GLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERG 214
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 49/179 (27%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F MI+ G +PD ++ IL++ C +G M EA EF ++ + G P
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRI 352
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+ A ++V +M+ G PDL T+ LI C+ G
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGN---------------------- 390
Query: 213 IDEAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
I+E+F+L ++ G K L SL G+ D+A EM++ P+ Y+
Sbjct: 391 IEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS 449
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR------------- 114
+++I+ + K G I AV + + ++ +NSL F + +
Sbjct: 519 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 578
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
G VP T+T L+N +C G M + L E+ K P +
Sbjct: 579 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 638
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ Q++ M +G PD T+N++I++ CK+ +L
Sbjct: 639 SVQLLKYMYARGLFPDQITYNTVIQSFCKAHDL 671
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVL--LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS 134
HGL+ +V + C++ + +++ LH M K P + T+T++V C
Sbjct: 579 HGLVPTSVTYTTLMNGY-CEEGDMHSMFDMLH----EMEAKAIKPTQITYTVVVKGLCKE 633
Query: 135 GKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLETF 178
G++ E+ + L+ + +G P ++ A Q+ N+M++ P T+
Sbjct: 634 GRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTY 693
Query: 179 NSLIETICKSGEL 191
N LI +C G L
Sbjct: 694 NVLINGLCVYGNL 706
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 42 LISELSMWKTIELMKP-DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
L E + ++++L+K + +FP T + +I+ F K + A ++ N+ + Q
Sbjct: 630 LCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPS 689
Query: 99 VLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+ YN L +C V + + K +T ++ A C+ G ++ A F
Sbjct: 690 PVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFH 749
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIET 184
++ ++GF +R ++N++ K+ + D + F ++ T
Sbjct: 750 QMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLT 788
>gi|156070795|gb|ABU45207.1| unknown [Solanum bulbocastanum]
Length = 405
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 42/203 (20%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-------------- 112
LS II +G G+ D+A++++++ + + +N L VR
Sbjct: 105 LSSIIRSYGVAGMFDHALKIYHQMDDLGTPRSAISFNVLLSACVRSKLYDRVPQLFDEIP 164
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--------------FNPPVRS 158
++ GF+PDK ++ IL+ ++C G A E L+E+ +KG F +S
Sbjct: 165 VKYGFLPDKVSYGILIRSYCEMGSPEMAMERLKEMEEKGVEITSVTFTTILHSFYKKRKS 224
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKS---GELGLCADVNTNKISIPAVSKEF-- 211
A+++ N+M+ +G PD+ +N I I G L ++N + +S +
Sbjct: 225 DEAEKVWNEMVNRGCGPDVGAYNVKIMNIQGGDPEGVKALIEEMNDAGLKPDTISYNYLM 284
Query: 212 -------MIDEAFRLLCNLVEDG 227
+IDEA ++ +L ++G
Sbjct: 285 TCYCRNELIDEAQKVYDDLEKNG 307
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 33/185 (17%)
Query: 45 ELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN- 103
E++M + E M+ + + T + I+ F K D A +V+N+ C V YN
Sbjct: 190 EMAMERLKE-MEEKGVEITSVTFTTILHSFYKKRKSDEAEKVWNEMVNRGCGPDVGAYNV 248
Query: 104 -----------SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+ M G PD ++ L+ +C + + EAQ+ +L G
Sbjct: 249 KIMNIQGGDPEGVKALIEEMNDAGLKPDTISYNYLMTCYCRNELIDEAQKVYDDLEKNGC 308
Query: 153 NPPVRSAKQMVNKMIKQG----------------SVPDLETFNSLIETICKSGEL----G 192
NP + + ++ + K+G +PD +T L+E + K +L G
Sbjct: 309 NPNAATFRTLIFYLCKKGRFETGYKVFKESVKVQKIPDFDTLKYLVEGLAKKSKLKDAKG 368
Query: 193 LCADV 197
+C V
Sbjct: 369 MCRTV 373
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 53/239 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ GK G +D A +F K ++Y SL H F +IR+G
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 523
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK-------- 168
PD ++ +G++ + + +++ GF P VRS +++ + K
Sbjct: 524 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 583
Query: 169 --------QGSVPDLETFNSLIETICKSGELGLCAD-------------VNTNKISIPAV 207
QG D +N++++ CKSG++ + V T + +
Sbjct: 584 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 643
Query: 208 SKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPN 255
+K +DEA+ L G +L F +G+ D+A+ EM K PN
Sbjct: 644 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 702
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRMIR 114
S +I+ FGK G ID A + + V +NSL VCF M
Sbjct: 672 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 731
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK------ 168
P+ T++IL+N C K +A F Q++ +G P V + M++ + K
Sbjct: 732 MKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITD 791
Query: 169 ----------QGSVPDLETFNSLIETI 185
G +PD +FN+LIE +
Sbjct: 792 AYSLFERFKANGGIPDAASFNALIEGM 818
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 44/188 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------MIRKGF 117
+I +G G ++A ++ + C V+ +NS+ C + +++K
Sbjct: 325 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA 384
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET 177
P+ T+ I+++ C G++ EA L E+ P+L T
Sbjct: 385 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASL-------------------FPNLLT 425
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
N +++ +CK+ +L G D T I + K+ +DEA+RL ++
Sbjct: 426 VNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 485
Query: 225 EDGHKLFP 232
+ GH P
Sbjct: 486 DAGHNANP 493
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M ++GF D R + +V+ +C SGK+ +A E L+E+ +K P V + +V+ + K
Sbjct: 586 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 645
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG- 227
+ L+ L E ++ G+ +V I K IDEA+ +L +++ G
Sbjct: 646 ---IDRLDEAYMLFE---EAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 699
Query: 228 -------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ L +L + ++A F M+ PPN Y+
Sbjct: 700 TPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 742
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 62/246 (25%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
I+ FGK G +D A + F++ A + + Y S+ F +M +
Sbjct: 256 IDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS 315
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------- 164
VP + ++ + S+G+ +A + L+ L ++G P V S ++
Sbjct: 316 VPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALS 375
Query: 165 --KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+++K+ + P+ T+N +I+ +C G + L ++ T I + + K
Sbjct: 376 LFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 435
Query: 210 EFMIDEAFRLL---------------CNLVED-GHKLFPSLGQFDDAFCFFSEMQIKTHP 253
++EA+++ C+L++ G K GQ D+A+ F +M H
Sbjct: 436 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKK-----GQVDEAYRLFEKMLDAGHN 490
Query: 254 PNRPVY 259
N VY
Sbjct: 491 ANPVVY 496
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/206 (17%), Positives = 88/206 (42%), Gaps = 43/206 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
++ + G + +A+ + ++ + ++LYN CF + + +G
Sbjct: 220 LVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQG 279
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNPPVR--SAK 160
PD ++T ++ C +G++ EA+E ++ + G+ R A
Sbjct: 280 LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAY 339
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV------------NTNKISIPAVS 208
+++ ++ ++G +P + +FNS++ + K ++ + +T I I +
Sbjct: 340 KLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLC 399
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSL 234
++EA+R+L + + LFP+L
Sbjct: 400 LGGRVEEAYRILDEM--EHASLFPNL 423
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
P+ T I+V+ C + K+ EA + + S +G NP + +++ + K+G V E +
Sbjct: 421 PNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD--EAY 478
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
L E + +G N N + ++ + F I EDGHK+F L
Sbjct: 479 R-LFEKMLDAGH-------NANPVVYTSLIRNFFIH-------GRKEDGHKIFKEL 519
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 45/219 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
MK ++ + + +++ F K G + A E+ + Q V Y ++
Sbjct: 589 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 648
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
++ F KG + ++ L++ + G++ EA L+E+ KG P V +
Sbjct: 649 LDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 708
Query: 162 MVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+++ ++K + + L F S+ E C NT SI +I+ L
Sbjct: 709 LLDALVKAEEINEALVCFQSMKEMKCPP---------NTYTYSI-------LING----L 748
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C + +++ AF F+ +MQ + PN Y
Sbjct: 749 CR-----------VQKYNKAFVFWQDMQKQGLVPNVVTY 776
>gi|341606831|gb|AEK83518.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606833|gb|AEK83519.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606835|gb|AEK83520.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606839|gb|AEK83522.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606841|gb|AEK83523.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606843|gb|AEK83524.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606845|gb|AEK83525.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606847|gb|AEK83526.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606849|gb|AEK83527.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606851|gb|AEK83528.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606853|gb|AEK83529.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606855|gb|AEK83530.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606857|gb|AEK83531.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606859|gb|AEK83532.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606861|gb|AEK83533.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606863|gb|AEK83534.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606865|gb|AEK83535.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606867|gb|AEK83536.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606871|gb|AEK83538.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606873|gb|AEK83539.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606875|gb|AEK83540.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606877|gb|AEK83541.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606879|gb|AEK83542.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606881|gb|AEK83543.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606883|gb|AEK83544.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606885|gb|AEK83545.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606887|gb|AEK83546.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606889|gb|AEK83547.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606891|gb|AEK83548.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606893|gb|AEK83549.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606895|gb|AEK83550.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606897|gb|AEK83551.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606899|gb|AEK83552.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606901|gb|AEK83553.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606903|gb|AEK83554.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606905|gb|AEK83555.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606907|gb|AEK83556.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606909|gb|AEK83557.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606911|gb|AEK83558.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606913|gb|AEK83559.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606915|gb|AEK83560.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606917|gb|AEK83561.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606919|gb|AEK83562.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606921|gb|AEK83563.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606923|gb|AEK83564.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606925|gb|AEK83565.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606927|gb|AEK83566.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606929|gb|AEK83567.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606931|gb|AEK83568.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606933|gb|AEK83569.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606935|gb|AEK83570.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606937|gb|AEK83571.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606939|gb|AEK83572.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606941|gb|AEK83573.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606943|gb|AEK83574.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606945|gb|AEK83575.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606947|gb|AEK83576.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606949|gb|AEK83577.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606951|gb|AEK83578.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606953|gb|AEK83579.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606957|gb|AEK83581.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606959|gb|AEK83582.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606961|gb|AEK83583.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606963|gb|AEK83584.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606965|gb|AEK83585.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606967|gb|AEK83586.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606969|gb|AEK83587.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606971|gb|AEK83588.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606973|gb|AEK83589.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606975|gb|AEK83590.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 5 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 42
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 43 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 102
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 103 ALDYFQT-----CRFN--GFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 155
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 156 CYNALIDALTKHGKVDEAMTLFKRME 181
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M KG P+ T+ ++N +CSSG+ EAQ L+E+ ++ +P V +
Sbjct: 271 FSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVK 330
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
A+++ N+M+ +G +P+ T+NS+I+ K L G DV T
Sbjct: 331 EGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVIT 390
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I +D+ +LL + G
Sbjct: 391 FSILIDGYCGAKRVDDGMKLLHEMSRRG 418
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ M +G VPD T+ +++ C ++ EA + + KGF+P V + ++N K
Sbjct: 527 YEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCK 586
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G V D +E C+ G G+ A+ T + I + I+ A + ++ G
Sbjct: 587 VGRVGD------GLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG 639
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 96/265 (36%), Gaps = 66/265 (24%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR----- 111
+ P T++ +I+ F K +D A +F C V+ ++ L C +
Sbjct: 348 GIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDG 407
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
M R+G V + T+T L++ +C G + A + LQE+ G P V + +++
Sbjct: 408 MKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDG 467
Query: 166 MIKQGSV---------------------------PDLETFNSLIETICKSGEL------- 191
+ G + PD++T+N LI + G+
Sbjct: 468 LCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELY 527
Query: 192 ------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL------- 234
GL D T I + K+ +DEA ++ ++ G F +L
Sbjct: 528 EEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKV 587
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ D F EM + N Y
Sbjct: 588 GRVGDGLEVFCEMGRRGIVANAITY 612
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRSAK- 160
F ++ + GF P T + L++ C ++ EA F ++ N R +
Sbjct: 134 FGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPNVIAFTTLMNGLCREGRV 193
Query: 161 ----QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
++++M++ G P+ T+ ++++ +CK G+ ++ + + +I A
Sbjct: 194 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSA 253
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ L +DG + DA FSEMQ K PN Y
Sbjct: 254 --IIDGLWKDGRQ--------TDAQNLFSEMQEKGISPNLFTY 286
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 30/147 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-KGFNPPV------------- 156
RM+ G P++ T+ +V+ C G A L+++ + P V
Sbjct: 202 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKD 261
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTN 200
A+ + ++M ++G P+L T+N +I C SG E + DV T
Sbjct: 262 GRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTF 321
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I A+ KE EA L ++ G
Sbjct: 322 SVLINALVKEGKFFEAEELYNEMLPRG 348
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 49/171 (28%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M GF D + + IL+ +C ++ EA E LQE+ + G P V
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ +++ KMI G P + TF +L+ CK G+ IDE
Sbjct: 439 FAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGK----------------------IDE 476
Query: 216 AFRLLCNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
A R+L ++ E G + ++ +L G D A F EM+ K+ P N
Sbjct: 477 ALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPAN 527
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 54/231 (23%)
Query: 41 TLISELSMWKTIE-------LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93
T+IS L+ +E MK + + +++I F + + A E+ +
Sbjct: 358 TMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEV 417
Query: 94 NCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140
+ V YN+L +MI G P T LV+ +C GK+ EA
Sbjct: 418 GIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEA 477
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV--N 198
L+ + + G +P N +I +N+LI+ +CK G++ L ++
Sbjct: 478 LRILRSMDESGIHP---------NNVI----------YNTLIDFLCKRGDVDLAIELFDE 518
Query: 199 TNKISIPAVSKEF-----------MIDEAFRLLCNLVEDGHKLFPSLGQFD 238
+ S+PA F M ++AF L+ + E+ + FP D
Sbjct: 519 MKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREE--RCFPDYVTVD 567
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELS--DKGFNPPVRSAKQMVNKMIKQGSV---- 172
PD T+ ILVN C +G++ +A L +S D P V + +V+ + K G V
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229
Query: 173 --------------PDLETFNSLIETICKSGELGL 193
P+ T+N LI+ C+ G + +
Sbjct: 230 AFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISM 264
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFL-QELSDKGFNPP-----------------VRSAK 160
PD T +V+ C SG+++EA F+ Q +S PP + A
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
++V KM +G ++ T N+++ +C++G G
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTG 298
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 49/171 (28%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M GF D + + IL+ +C ++ EA E LQE+ + G P V
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ +++ KMI G P + TF +L+ CK G+ IDE
Sbjct: 439 FAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGK----------------------IDE 476
Query: 216 AFRLLCNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
A R+L ++ E G + ++ +L G D A F EM+ K+ P N
Sbjct: 477 ALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPAN 527
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 54/234 (23%)
Query: 38 LNLTLISELSMWKTIE-------LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90
+ T+IS L+ +E MK + + +++I F + + A E+ +
Sbjct: 355 MYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEM 414
Query: 91 TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKM 137
+ V YN+L +MI G P T LV+ +C GK+
Sbjct: 415 KEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKI 474
Query: 138 REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
EA L+ + + G +P N +I +N+LI+ +CK G++ L ++
Sbjct: 475 DEALRILRSMDESGIHP---------NNVI----------YNTLIDFLCKRGDVDLAIEL 515
Query: 198 --NTNKISIPAVSKEF-----------MIDEAFRLLCNLVEDGHKLFPSLGQFD 238
+ S+PA F M ++AF L+ + E+ + FP D
Sbjct: 516 FDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREE--RCFPDYVTVD 567
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELS--DKGFNPPVRSAKQMVNKMIKQGSV---- 172
PD T+ ILVN C +G++ +A L +S D P V + +V+ + K G V
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229
Query: 173 --------------PDLETFNSLIETICKSGELGLCADV 197
P+ T+N LI+ C+ G + + ++
Sbjct: 230 AFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYEL 268
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFL-QELSDKGFNPP-----------------VRSAK 160
PD T +V+ C SG+++EA F+ Q +S PP + A
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
++V KM +G ++ T N+++ +C++G G
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTG 298
>gi|255685950|gb|ACU28464.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 168
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 6 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 65
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + +
Sbjct: 66 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYE 125
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 126 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 158
>gi|255685918|gb|ACU28448.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 165
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 10 MKNYGRKGKVQEAVNVFERMXFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 69
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + +
Sbjct: 70 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYE 129
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 130 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 162
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 44/213 (20%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRMIR 114
S +++ K G + A E+ + + V+ Y +L H F M+R
Sbjct: 270 STVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR 329
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
KGF PD ++T L+N +C K+ +A +E+ K + P ++
Sbjct: 330 KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQD 389
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A + ++M+ +G +PDL T++ L++++CK+ L L D+ I I
Sbjct: 390 AIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIID 449
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
+ + ++ A L NL G L PS+ ++
Sbjct: 450 GMCRAGELEAARDLFSNLSSKG--LHPSVWTYN 480
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++++ G PD T T L+ C GK+ EA ++ D+GF P V + ++N + K
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173
Query: 169 QGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
G+ PD+ + S+I+++CK ++ ++ + + F
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 233
Query: 213 IDEAFRLLCNLVEDGH 228
LCNL E H
Sbjct: 234 YTSLVHALCNLCEWKH 249
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 53/248 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +I K G A+ + NCQ V++Y S+ +C F +M
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G PD T+T LV+A C+ + + L ++ + P V
Sbjct: 223 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 282
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A ++V+ MI++G PD+ T+ +L++ C E+ G DV +
Sbjct: 283 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTL 342
Query: 204 IPAVSKEFMIDEAFRLLCNLVED----GHKLFPSL-------GQFDDAFCFFSEMQIKTH 252
I K ID+A L + K + +L G+ DA F EM +
Sbjct: 343 INGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQ 402
Query: 253 PPNRPVYA 260
P+ Y+
Sbjct: 403 MPDLVTYS 410
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 40 LTLISELSMWKTIELM--KPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNC 95
LT I+++ + T+ + + DS V P TL+++I F + A V K
Sbjct: 63 LTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGH 122
Query: 96 QQ------------CV--LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
Q CV + +LH+ F +MI +GF P+ T+ L+N C G A
Sbjct: 123 QPDPTTFTTLIRGLCVEGKIGEALHL-FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 181
Query: 142 EFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
L+ + P V A + ++M+ QG PD+ T+ SL+ +
Sbjct: 182 RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 241
Query: 186 CKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
C E + DV + A+ KE + EA ++ +++ G + P
Sbjct: 242 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE--P 299
Query: 233 SLGQFD---DAFCFFSEM 247
+ + D C SEM
Sbjct: 300 DVVTYTTLMDGHCLQSEM 317
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
PD + + I+++ C +G++ A++ LS KG +P V + M++ + K+G +
Sbjct: 439 PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 498
Query: 173 ----------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
PD T+N++ ++ E G ADV+T + + +S
Sbjct: 499 FMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSD 558
Query: 210 EFMIDEA-FRLLCNLVEDGHKLF 231
+ + + F +L L ED + F
Sbjct: 559 DGLDQSSCFLMLSVLSEDDRRYF 581
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 31/164 (18%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----------- 105
SL++ P T ++++++ K G++ A + + YNSL
Sbjct: 287 SLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVF 346
Query: 106 --HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
+ F MI KG +P+ ++ IL+N +C + ++ EA+E E+S +G P +
Sbjct: 347 EARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLI 406
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+++ M QG PDL T L++++CK G L
Sbjct: 407 SGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYL 450
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 49/201 (24%)
Query: 9 TSKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLI------SELSMWKTIELMKPDSLSV 62
T+ ED + NH+ I +H + ++L L+ + LS+ K IEL++ + V
Sbjct: 63 TNIEDALFSFNHM--IHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIER-DV 119
Query: 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
F +++I F + +D A V K +I+ GF PD
Sbjct: 120 FH--FNILINCFSRLQRVDFAFSVLGK----------------------IIKLGFEPDAV 155
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKM 166
T + L+N C K A EF E+ G+ P + + A ++ KM
Sbjct: 156 TFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKM 215
Query: 167 IKQGSVPDLETFNSLIETICK 187
K G PD+ +N++I+ +CK
Sbjct: 216 DKAGGRPDIVIYNTIIDGLCK 236
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 46/223 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIR-------- 114
T + II+ F K G AV + K + +++YN++ +C R++
Sbjct: 190 HTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSE 249
Query: 115 ---KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
KG PD T++IL++ C+S + EA E+ P V + +V+K
Sbjct: 250 IKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGM 309
Query: 166 ----------MIKQGSVPDLETFNSLIETIC---KSGELGLCADVNTNKISIPAVSKEFM 212
MI++G P+ T+NSL+ C K E + D K +P V
Sbjct: 310 LSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVV---- 365
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
++ +L N ++ D+A F EM + PN
Sbjct: 366 ---SYNILINGYCKAQRI-------DEARELFDEMSFRGLIPN 398
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M +G +P+ + L++ C +G+ EA+E +++ +G +P + + +++ + K
Sbjct: 387 FDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCK 446
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL 191
G + P+L T++ LI + KSG++
Sbjct: 447 LGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 50/195 (25%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K ++LM + + T +++I F K G++D A+++F
Sbjct: 1862 KVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLF---------------------- 1899
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
V M +G +PD T+ +V+ +C +GK+ EA + E+ +G P R+ + + +K
Sbjct: 1900 VEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKA 1959
Query: 170 GSVPDLE---------------TFNSLIETICKSG-------------ELGLCADVNTNK 201
G + D ++ +LI TICK G E G ++ T
Sbjct: 1960 GRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFN 2019
Query: 202 ISIPAVSKEFMIDEA 216
+ A+SKE D+A
Sbjct: 2020 VVFEALSKESNTDDA 2034
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 33/159 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC--------------- 108
T +++I K G +++A + A C ++ YN+L +C
Sbjct: 1769 TYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRL 1828
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ KG P T+T++++A +AQ+ L + + G + + ++N+ K
Sbjct: 1829 FEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAK 1888
Query: 169 ----------------QGSVPDLETFNSLIETICKSGEL 191
+G +PD+ T+NS+++ CK+G++
Sbjct: 1889 AGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKV 1927
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 76/211 (36%), Gaps = 61/211 (28%)
Query: 32 ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT 91
+R R + LI+E KP S T S I+ + + G A+ +
Sbjct: 1674 KRQYKRAHQMLIAE---------SKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHMK 1724
Query: 92 AFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
LYN + H+C M PD T+ IL+NA C G++
Sbjct: 1725 KAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLE 1784
Query: 139 EAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGELGLCADV 197
+AQ ++ M++ P D+ T+N+LI +C+ G
Sbjct: 1785 DAQGLVE--------------------MMQARECPTDIVTYNTLIHGLCRKG-------- 1816
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ F ++ AFRL +V+ GH
Sbjct: 1817 ----------NGRFRVERAFRLFEEMVDKGH 1837
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 50/244 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E MK + + ++I+ KHG A+++ + +C + YN L +
Sbjct: 1720 LEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCK 1779
Query: 112 MIR----KGFV---------PDKRTHTILVNAWCSSGKMR----EAQEFLQELSDKGFNP 154
+ R +G V D T+ L++ C G R A +E+ DKG P
Sbjct: 1780 VGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTP 1839
Query: 155 PV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV- 197
A+++++ M + G DL T+N LI K+G + D+
Sbjct: 1840 TSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLF 1899
Query: 198 --NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ IP V + N + DG F G+ ++A F+EM+ + PN
Sbjct: 1900 VEMPTRGCIPDV-----------VTYNSIVDG---FCKAGKVEEANKLFAEMKARGIFPN 1945
Query: 256 RPVY 259
Y
Sbjct: 1946 GRTY 1949
>gi|341606837|gb|AEK83521.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606869|gb|AEK83537.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606977|gb|AEK83591.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606979|gb|AEK83592.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606981|gb|AEK83593.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606983|gb|AEK83594.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606985|gb|AEK83595.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606987|gb|AEK83596.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606989|gb|AEK83597.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606991|gb|AEK83598.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606993|gb|AEK83599.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606995|gb|AEK83600.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606997|gb|AEK83601.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606999|gb|AEK83602.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607001|gb|AEK83603.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607003|gb|AEK83604.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607005|gb|AEK83605.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607007|gb|AEK83606.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607009|gb|AEK83607.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607011|gb|AEK83608.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607013|gb|AEK83609.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607015|gb|AEK83610.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 207
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 5 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 42
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 43 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 102
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 103 ALDYFQT-----CRFN--GFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 155
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 156 CYNALIDALTKHGKVDEAMTLFKRME 181
>gi|341605707|gb|AEK82956.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + B+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQTCXFN-------GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMXLFKRME 184
>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
Length = 278
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 29/164 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC------ 108
MK + QT + +I +GK + NAV++FN Y+++ C
Sbjct: 1 MKAAGIVPSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGF 60
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
F RM ++G P K T+ +++A+ SG A+E ++ D+G++P
Sbjct: 61 FQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLS 120
Query: 156 ----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A+ ++ +M +QG P L FN L+ K+G
Sbjct: 121 LICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAG 164
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 29/219 (13%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
++ LSV +T S +I +GK G +A ++F++ + + YN++ + R
Sbjct: 36 LQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGL 95
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M +G+ PD T+ L+ A+ + + +EA++ L+ + +G P +
Sbjct: 96 HTRAEEVFNDMQDEGYSPDSYTYLSLICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNH 155
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA---FR 218
+V K G V D I G+ GL +D+ ++ + E F
Sbjct: 156 LVFAFGKAGLVEDATRLYMEI------GKAGLKSDLACHRTMLKIYRDNGRTHEGILLFE 209
Query: 219 LLCNLVE-DGH------KLFPSLGQFDDAFCFFSEMQIK 250
L N +E DG+ L+ S G+ +A F M+ K
Sbjct: 210 KLQNYIEPDGNIYRMAIDLYESAGKIVEARYIFQLMKSK 248
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
W L PD S +++I+ + G A+E+ + T F C + +N L
Sbjct: 205 WIQDGLYSPDVWS-----FNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDG 259
Query: 107 VCFVRMIRKGF------------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C + + KG +P+ T+T +++ +C +GKM +A ++ + G P
Sbjct: 260 LCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRP 319
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ SA +M ++I + PD+ TF+SLI+ C+ G+L
Sbjct: 320 NTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQL 372
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 43/205 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------VRMIRKG 116
T + +I + K G +++A+ V+N + + YN L + VRM R+
Sbjct: 288 TYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQL 347
Query: 117 FV----PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS- 171
+ PD T + L++ +C G++ +A+ +E+ P V + +++ + KQ
Sbjct: 348 ILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRS 407
Query: 172 ----------------VPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
P +N +I+ +CK G E G D T I
Sbjct: 408 AEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTI 467
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I + I EA L +VE G
Sbjct: 468 LIIGHCMKGRIPEAITLFHKMVEAG 492
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M KG PDK T+TIL+ C G++ EA + +KM++ G
Sbjct: 453 MKEKGCHPDKYTYTILIIGHCMKGRIPEA-------------------ITLFHKMVEAGC 493
Query: 172 VPDLETFNSLIETICKSG 189
PD T NS + + K+G
Sbjct: 494 RPDNITVNSFVSCVLKAG 511
>gi|399107198|gb|AFP20363.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFN--GFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMTLFKRME 186
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 50/231 (21%)
Query: 78 GLIDNAVE--------VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
GL+D +E +N A C+ L +S + M +G VPD+RT+ ++
Sbjct: 313 GLLDEMLERNLVPDLITYNSLIAGQCRAGHL--DSAYRLLSLMKERGLVPDQRTYGCFID 370
Query: 130 AWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVP 173
C S ++ EA+ L+++G + V A + KM+ + P
Sbjct: 371 FLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSP 430
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ TFN+LI +C +G L GL V T I I + K+ D+A + L
Sbjct: 431 NAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCL 490
Query: 221 CNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
++ G K ++ S G+ +A +M+ + PP+ Y
Sbjct: 491 QKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYT 541
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 29/180 (16%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S ++ + LMK L +T I+ K ++ A +F+ T V++Y+ L
Sbjct: 345 SAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLI 404
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
F +M+ K P+ T L++ CS+G ++EA ++ G
Sbjct: 405 DGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLK 464
Query: 154 PPVRSAKQMVNKMIKQGSVPD----------------LETFNSLIETICKSGELGLCADV 197
P V + ++ +M+KQG D T+N+ IE C +G++ D+
Sbjct: 465 PTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDM 524
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 50/262 (19%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
L+ E++ T L + S+ ++ T +L+I + K G + A + K
Sbjct: 172 LVDEMNQLYTEMLEEFVSMDIY--TFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFT 229
Query: 102 YNS--LHVCFVRMIRKGF-----VPDKR--THTILVNAWCSSGKMREAQEFLQELSDKGF 152
S L C + + F +P++ ++ L++ C +G++ EA + D
Sbjct: 230 STSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCC 289
Query: 153 NPPVRS---------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------ 191
P V + A ++++M+++ VPDL T+NSLI C++G L
Sbjct: 290 YPNVYTYTALIKGLCRKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRL 349
Query: 192 -------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPS 233
GL D T I + K ++EA RL +L E+G +
Sbjct: 350 LSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCK 409
Query: 234 LGQFDDAFCFFSEMQIKTHPPN 255
+G+ D+A C F +M K PN
Sbjct: 410 VGKVDEAGCLFEKMLSKNCSPN 431
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 36/164 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I G + A+ +F++ + V +N L H C +M
Sbjct: 434 TFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKM 493
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ G P RT+ + +CS+GK++EA++ + ++ ++G P
Sbjct: 494 MSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLT 553
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIE-------TICKSGELGL 193
SA ++ M P TF SLI+ + KSGE G+
Sbjct: 554 YSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGV 597
>gi|359475966|ref|XP_002279628.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g63330-like [Vitis vinifera]
Length = 563
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 29/198 (14%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGF 117
++ +G G I A+ F++ +C+ YN++ FV+ ++++G
Sbjct: 189 VKAYGDRGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLARAVFDQIVKEGV 248
Query: 118 V-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
V PD T+T ++ +C G + A+ E+ K V AK+M+ +M G ++
Sbjct: 249 VKPDVSTYTTIIRGYCKMGMIENAKNVFDEMGCKPNLGNVDEAKRMMTRMRLNGLKDNVA 308
Query: 177 TFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
T S+++ +C G+ LG+ AD + + K D+A LL +
Sbjct: 309 THTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEM 368
Query: 224 VEDGHKLFPSLGQFDDAF 241
G + PS+ F+ F
Sbjct: 369 KSRG--INPSVSSFNAVF 384
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 67/237 (28%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN----KCTAFNCQQCVLLYNSLH--- 106
++KPD T + II + K G+I+NA VF+ K N + + +
Sbjct: 248 VVKPDV-----STYTTIIRGYCKMGMIENAKNVFDEMGCKPNLGNVDEAKRMMTRMRLNG 302
Query: 107 --------------VCFV-----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
+C V M+ G D + + ++VN +C GK +A
Sbjct: 303 LKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAI 362
Query: 142 EFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETI 185
L+E+ +G NP V S A ++ +M + G P+ +++++I+ +
Sbjct: 363 SLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGL 422
Query: 186 CKS-GEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
CK+ G + G D + + ++ D A RL C +++ G+
Sbjct: 423 CKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGY 479
>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 47/214 (21%)
Query: 64 PQTLSLI--IEEFGKHGLIDNAVEVF----NKCTAFNCQQC---------VLLYNSLHVC 108
P + + I I+ F + G+++ A E+F K + + ++ N + C
Sbjct: 205 PDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGALVRNNRMDEC 264
Query: 109 FV---RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------- 156
F MI G +PD T L+ CS+GK+ EA FLQE+ +KG+ P +
Sbjct: 265 FKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCFLKV 324
Query: 157 -------RSAKQMVNKMIKQGSVPDLETFNSLI-------------ETICKSGELGLCAD 196
A ++ +MI+ G P ++T N LI ET + + G D
Sbjct: 325 LCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFETWYEMDKRGCAQD 384
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
V+T + I + +++A L+ ++V G KL
Sbjct: 385 VDTYIVMIDGLFGCNKVEDACFLIEDIVNKGMKL 418
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 34/168 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK----------- 160
MI+ G PD T+ ++A+C +G + EA E + + KG +AK
Sbjct: 198 MIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGALVR 257
Query: 161 --------QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+++ MI G +PD+ TF LIE +C +G++ G D+ T
Sbjct: 258 NNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVT 317
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+ + + +EA RL ++E G FPS+ + F EM
Sbjct: 318 YNCFLKVLCENKNSEEALRLYERMIEAG--CFPSVQTHNMLISMFFEM 363
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 46/168 (27%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
PD T+ ++ WC ++R P R K ++ +MI+ G PD T+
Sbjct: 170 PDANTYNVMFFGWC---RVRN---------------PTRGMK-VLEEMIQLGHTPDSFTY 210
Query: 179 NSLIETICKSGELGLCADV----------------NTNKISIPAVSKEFMIDEAFRLLCN 222
+ I+ C++G + A++ T I I A+ + +DE F+LL +
Sbjct: 211 ITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGALVRNNRMDECFKLLED 270
Query: 223 LVEDG--------HKLFP---SLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ G +L S G+ D+A+ F EM K +PP+ Y
Sbjct: 271 MINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTY 318
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + +++I + K G +D A+ VF+K
Sbjct: 323 VGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSK---------------- 366
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------- 154
M ++G PD T+ ++ C SG++ +A + +++ D+G +P
Sbjct: 367 ------MRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHG 420
Query: 155 -----PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
A++++ +M+ +G + FNS+I++ CK G +G+ D
Sbjct: 421 LCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 480
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
+ T I +DEA +LL +V G K + + + DA F
Sbjct: 481 IITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFK 540
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 541 EMESSGVSPDIITY 554
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 38/172 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M++ G +P+ RT+T +++ +CSSG+ +EA FL+++ G P G
Sbjct: 257 MVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEP--------------DGL 302
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
PD+ T+ +L++ G L G+ D I I A +K+ +DEA
Sbjct: 303 EPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAML 362
Query: 219 LLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + + G + G+ +DA +F +M + P VY
Sbjct: 363 VFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 414
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G PD T++ L++ +C +GKM EA + L + G P + + ++N
Sbjct: 469 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCK 528
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 529 ISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 588
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + D+A R+ NL
Sbjct: 589 YNIILHGLCKNKLTDDALRMFQNL 612
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 45/190 (23%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G PD ++T ++N + G +A E+ D+ +P V + A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------------GLCADVNTNK 201
+++ M+K G +P+ T+ S++ C SG+ GL D+ T
Sbjct: 251 MEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYC 310
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIK 250
+ + + + LL +V +G H ++ L G+ D+A FS+M+ +
Sbjct: 311 TLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQ 370
Query: 251 THPPNRPVYA 260
P+ Y
Sbjct: 371 GLNPDAVTYG 380
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK---GFNPPVRSA 159
+++ + RM +PD + TIL+ C + +EA E ++D G P V S
Sbjct: 140 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSY 199
Query: 160 KQMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKI 202
++N K+G PD+ T++S+I +CK + +V T+ +
Sbjct: 200 TTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMV 258
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 100/234 (42%), Gaps = 59/234 (25%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMI 113
++KPD T + II + K G+I+NA VF++ C+ ++ YN++ F +
Sbjct: 248 VVKPDV-----STYTTIIRGYCKMGMIENAKNVFDE---MGCKPNLVTYNTMINGFCK-- 297
Query: 114 RKGFV-----------------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
KG + PD T+T L++ +C G++ EA ++++E+ + P V
Sbjct: 298 -KGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNV 356
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE---------- 190
+ AK+M+ +M G ++ T S+++ +C G+
Sbjct: 357 LTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKE 416
Query: 191 ---LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAF 241
LG+ AD + + K D+A LL + G + PS+ F+ F
Sbjct: 417 MVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRG--INPSVSSFNAVF 468
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 34/152 (22%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGF 117
++ +G G I A+ F++ +C+ YN++ FV+ ++++G
Sbjct: 189 VKAYGDRGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLARAVFDQIVKEGV 248
Query: 118 V-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG------ 170
V PD T+T ++ +C G + A+ E+ G P + + M+N K+G
Sbjct: 249 VKPDVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMINGFCKKGLMESAM 305
Query: 171 -----------SVPDLETFNSLIETICKSGEL 191
+PD T+ +LI+ CK GEL
Sbjct: 306 KIVDQMTETEDCMPDTVTYTTLIDGYCKRGEL 337
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 30/147 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ G D + + ++VN +C GK +A L+E+ +G NP V S
Sbjct: 417 MVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGK 476
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKS-GEL-------------GLCADVNTNK 201
A ++ +M + G P+ +++++I+ +CK+ G + G D +
Sbjct: 477 TDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYS 536
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ ++ D A RL C +++ G+
Sbjct: 537 WLVKGYCEDGNADMAMRLFCEMLDMGY 563
>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 524
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 51/192 (26%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+ ++II+ K ++D A+ +FN+ +C KG PDK T+
Sbjct: 311 HSYTIIIKRLCKIKMVDEALSLFNE------MRC----------------KGITPDKVTY 348
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKG----------------FNPPVRSAKQMVNKMIK 168
+ L++ C S ++ A E L ++ +G N V A +V K+
Sbjct: 349 SSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKD 408
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
QG P++ T+N LI+ +CK G G V T I I + E + DE
Sbjct: 409 QGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDE 468
Query: 216 AFRLLCNLVEDG 227
A LL + ++G
Sbjct: 469 AMTLLEKMEDNG 480
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++++ G+ PD T T L+ C +GK+ EA F + +GF S ++N + K
Sbjct: 106 LAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCK 165
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKIS----IPAVSKEFMIDEAFRLLCNLV 224
G ET +L G+L VNTN + I ++ KE ++ EA+ L ++
Sbjct: 166 MG-----ETRAALQVLRKIDGKL-----VNTNVVMYSTIIDSLCKEKLVTEAYELYSQMI 215
Query: 225 EDGHKLFPS-------------LGQFDDAFCFFSEMQIKTHPPN 255
K+ P +GQF +AF F EM + P+
Sbjct: 216 VK--KVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPD 257
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LH-----------VCFVRMI 113
T S +I+ K I +A E+ ++ A V+ Y S LH V V+ I
Sbjct: 347 TYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKI 406
Query: 114 R-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+ +G P+ T+ IL++ C G+ AQ Q+L KG+ V + M+N
Sbjct: 407 KDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLF 466
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGE 190
KM G PD+ T+ ++I + K+ E
Sbjct: 467 DEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDE 500
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 57/207 (27%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
+I +GF ++ ++ IL+N C G+ R A + L+++ K N V
Sbjct: 143 HVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEK 202
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
A ++ ++MI + PD+ TF++LI C G+ + DV T
Sbjct: 203 LVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFN 262
Query: 202 ISIPAVSKEFMIDEAFRLLC------NLVEDGHKLFPSLGQ------------------- 236
I + A+ KE E +L N V +F +G+
Sbjct: 263 ILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCK 322
Query: 237 ---FDDAFCFFSEMQIKTHPPNRPVYA 260
D+A F+EM+ K P++ Y+
Sbjct: 323 IKMVDEALSLFNEMRCKGITPDKVTYS 349
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 40/186 (21%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VR 157
++ PD ++TI++ C + EA E+ KG P +
Sbjct: 303 KRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERIS 362
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A +++++M +G D+ T+ S + +CK+ ++ G+ ++NT I I
Sbjct: 363 HAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILI 422
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL---GQFDDAFCFFSEMQIKTHP 253
+ KE + A + +L+ G+K + L G FD+A +M+
Sbjct: 423 DGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCT 482
Query: 254 PNRPVY 259
P+ Y
Sbjct: 483 PDVVTY 488
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ +MI K PD T + L+ +C G+ +EA E+ NP V + +V+ + K
Sbjct: 211 YSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCK 270
Query: 169 QGSVPDLETFNSL------IETICKS-------GELGLCADVNTNKISIPAVSKEFMIDE 215
+GS ET N L + + K+ G+ + DV++ I I + K M+DE
Sbjct: 271 EGSTK--ETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDE 328
Query: 216 AFRL 219
A L
Sbjct: 329 ALSL 332
>gi|341606955|gb|AEK83580.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 206
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 5 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 42
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 43 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 102
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 103 ALDYFQT-----CRFN--GFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 155
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 156 CYNALIDALTKHGKVDEAMTLFKRME 181
>gi|260780430|gb|ACX50761.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780496|gb|ACX50794.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 188
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CQFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 -----HKLFPSLGQFDDAFCFFSEMQ 248
F G+ D+A F M+
Sbjct: 159 CYNALIDAFTKHGKVDEAMTLFKRME 184
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 33/169 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+++G P+ T+ +L+N+ C G +REA +E+ DKG P V +
Sbjct: 254 MVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLE 313
Query: 159 ---AKQMVNKMIKQGSV--PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
A + +MI+ +V PD+ TFNS+I +CK G + T + + +E M
Sbjct: 314 MDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRM-------TQAVKV----REMMA 362
Query: 214 DEAFRLLCNLVEDGHKL--FPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ +CNLV + + F + + A E+ I P+ Y+
Sbjct: 363 ERG--CMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYS 409
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTI 126
+D A+E+ ++ Q V++Y+ L + R M R+G PD T
Sbjct: 174 LDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTG 233
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
L++ C GK +A + + +G P V + ++N + K+GSV + T ++
Sbjct: 234 LIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMD--- 290
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
+ G+ DV T I +S +DEA L +++ + P + F+
Sbjct: 291 ---DKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFN 339
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 55/252 (21%)
Query: 53 ELMKPDSLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV 110
E+++ D++ V P ++ +I K G + AV+V C ++ YN L F+
Sbjct: 323 EMIQGDTV-VEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFL 381
Query: 111 RMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
R+ + G PD T++IL+N + ++ A++FL + +G +
Sbjct: 382 RVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELF 441
Query: 158 SAKQMVNKMIKQGSVP---------------DLETFNSLIETICKSGEL----------- 191
++ M +QG + D ++++I CKSG++
Sbjct: 442 HYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDML 501
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFD 238
GL D T + I +K ++EA R+L + G K + + GQ D
Sbjct: 502 DEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTD 561
Query: 239 DAFCFFSEMQIK 250
EM+ K
Sbjct: 562 KVLKLIHEMRAK 573
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 53/235 (22%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------- 105
+ KPD+ +++I+ F K G++D A + N+ N ++ Y SL
Sbjct: 208 ITKPDTC-----IYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLS 262
Query: 106 -----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------ 154
F+ MI PD T +++ C GK+ +A+E + + +KG P
Sbjct: 263 QWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYN 322
Query: 155 ----------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTN 200
+ A+++ + MI +G PD+ ++ +LI + ++ L +++ N
Sbjct: 323 VVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQN 382
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ V+ C+++ G LF +G+ + A FF EMQ H PN
Sbjct: 383 GLKPSIVT------------CSVLLRG--LF-EVGRTECAKIFFDEMQAAGHIPN 422
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 100/266 (37%), Gaps = 81/266 (30%)
Query: 43 ISELSMWKTIE--LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
+ +LS W+ + ++ L+++P T + +I+ K G +++A E+ +
Sbjct: 258 LGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPN 317
Query: 99 VLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+ YN + F MI KG PD ++T L+N + KM +A + +
Sbjct: 318 EITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFR 377
Query: 146 ELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLET------------ 177
E+S G P + + AK ++M G +P+L T
Sbjct: 378 EISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNG 437
Query: 178 -----------------------FNSLIETICKSGEL-------------GLCADVNTNK 201
+ ++I +CK+G+L GL DV T
Sbjct: 438 LVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYT 497
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG 227
I +E ++DEA +L + ++G
Sbjct: 498 AMISGYCQEGLLDEAKDMLRKMEDNG 523
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 44/204 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFN-CQQCVLLYNSL--HVC----------FVRM 112
T + +I + +AV +F K N C+ ++Y ++ +C +R+
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRL 203
Query: 113 IRKGFV-PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
+ +G PD + I+++A+C G + A L E+ K P + + +++
Sbjct: 204 MEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQ 263
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+MI PD+ TFNS+I+ +CK G++ ++ T +MI++
Sbjct: 264 WEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMT-----------YMIEK 312
Query: 216 AF---RLLCNLVEDGHKLFPSLGQ 236
+ N+V DG+ L +G+
Sbjct: 313 GVEPNEITYNVVMDGYCLRGQMGR 336
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKR 122
K+GL++ A+ F+K + +Y ++ H F ++ G PD
Sbjct: 435 KNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVI 494
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
T+T +++ +C G + EA++ L+++ D G P R+ +V + V +++ F
Sbjct: 495 TYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAF 550
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIE 72
D A HI N+ H N + +S + +E + D+ Q + +I
Sbjct: 412 DEMQAAGHIPNLYTHCTLLGGYFK--NGLVEEAMSHFHKLERRREDT---NIQIYTAVIN 466
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---------MIRK----GFVP 119
K+G +D A F K V+ Y ++ + + M+RK G +P
Sbjct: 467 GLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLP 526
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
D RT+ ++V + S K+ E + FL+E++ K F+
Sbjct: 527 DNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFS 560
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 50 KTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
K +E++ + +SV P T + I+ G + A+EV ++ C V+ Y L
Sbjct: 194 KALEVL--ERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIE 251
Query: 106 HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C M +KG PD T+ +L+N C G++ EA +FL + G P
Sbjct: 252 ATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKP 311
Query: 155 PV-------RS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V RS A+++++ M+++G P + TFN LI +C+ LG DV
Sbjct: 312 NVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDV 370
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 41/184 (22%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RMI +G +PD T L+ +C SGK ++A ++ L + G P V + ++ K G
Sbjct: 131 RMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSG 190
Query: 171 SV-------------PDLETFNSLIETICKSGELGLC-------------ADVNTNKISI 204
+ PD+ T+N+++ ++C SG+L DV T I I
Sbjct: 191 EIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILI 250
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKT 251
A + + +A +LL + + G K P + G+ D+A F + M
Sbjct: 251 EATCNDSGVGQAMKLLDEMRKKGCK--PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG 308
Query: 252 HPPN 255
PN
Sbjct: 309 CKPN 312
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 21/181 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + L+ A++V K C L YN L F + M
Sbjct: 350 TFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 409
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD T+ L+ A C GK+ A E L +LS KG +P + + +++ + K G
Sbjct: 410 VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 469
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
E L+E + + GL D+ T + + +E +DEA ++ ++ +G + P
Sbjct: 470 ---EYAVELLEEMRRK---GLKPDIITYSTLLRGLGREGKVDEAIKIFHDM--EGLSIKP 521
Query: 233 S 233
S
Sbjct: 522 S 522
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 32/153 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++I + K G ID A+EV + + V+ YN++ +C R
Sbjct: 178 TYNVLIGGYCKSGEIDKALEVLER---MSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQ 234
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++ PD T+TIL+ A C+ + +A + L E+ KG P V + ++N + K+G +
Sbjct: 235 LQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 294
Query: 173 ----------------PDLETFNSLIETICKSG 189
P++ T N ++ ++C +G
Sbjct: 295 DEAIKFLNNMPSYGCKPNVITHNIILRSMCSTG 327
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+KPD + T S ++ G+ G +D A+++F+ + + + YN++ + +
Sbjct: 484 LKPDII-----TYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQ 538
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M+ KG P + T+TIL+ G EA E L EL +GF SA+Q
Sbjct: 539 TSRAIDFLAYMVEKGCKPTEATYTILIEGIADEGLAEEALELLNELCSRGFVKK-SSAEQ 597
Query: 162 MVNKM 166
+V KM
Sbjct: 598 VVVKM 602
>gi|255685912|gb|ACU28445.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 172
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 10 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQXHKVYMRMRDRGI 69
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + +
Sbjct: 70 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYE 129
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 130 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 162
>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW I M+ + + +T +++ ++ + +D A+ FN ++ ++ +N L
Sbjct: 117 MWDLINAMRKKKM-LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLS 175
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C + +RK F PD +T++IL+ W + +A+E +E+ D G +P
Sbjct: 176 ALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPD 235
Query: 156 VRSAKQMVNKMIKQGSVPD-LETFNSLIETICK 187
+ + MV+ + K G V + L S+ +ICK
Sbjct: 236 IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 268
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 41/203 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------------CFVRM 112
T S++++ K G +D A+ + C+ +Y+ L H F+ M
Sbjct: 238 TYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM 297
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G D L+ A+C + +M+ L+E+ KG P +S ++ +I++G
Sbjct: 298 ERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEK 357
Query: 173 ---------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
PD +T+ +I+ C+ E+ G+ ++T + I
Sbjct: 358 DEAFDVFRKMIKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLI 417
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG 227
+ +E +A LL ++E G
Sbjct: 418 NGLCEERTTQKACVLLEEMIEMG 440
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 100/258 (38%), Gaps = 59/258 (22%)
Query: 59 SLSVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
++ + P ++ ++ + K G + A+ + VL YN+L + R
Sbjct: 371 AMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLA 430
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
M+ +G PD T+TIL+N + A+EF E+ KG P +
Sbjct: 431 EARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRI 490
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
A Q+ M+ +G PD T+N +I+ +CK+G L GL
Sbjct: 491 CAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQ 550
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAF 241
D T I A + ++ EA +LL +V DG L PS+ G A+
Sbjct: 551 PDCITYTCLIHAHCERGLLREARKLLNGMVSDG--LQPSVVTYTILVHTCCRRGNLYSAY 608
Query: 242 CFFSEMQIKTHPPNRPVY 259
+F +M PN Y
Sbjct: 609 GWFRKMLDVGIEPNEITY 626
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------- 156
+M+ G PD T+T L++A C G +REA++ L + G P V
Sbjct: 542 TKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRR 601
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTN 200
SA KM+ G P+ T+N LI +C +G E GL + T
Sbjct: 602 GNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTY 661
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I +E +A RL + ++G
Sbjct: 662 TLLIDGNCREGNWADAIRLYFEMHQNG 688
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 93 FNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
C+Q + V F M G +PD T+ L+N +C +G ++EA L +L G
Sbjct: 354 LKCEQA----EAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGL 409
Query: 153 NPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLI 182
P V + A+++ +M++QG PD+ T+ L+
Sbjct: 410 APTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILM 455
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 65/259 (25%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
L+ EL W+TI+ M ++ P LS I++ G+ +++ A+ +F + C+
Sbjct: 140 LVGEL--WRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGT 197
Query: 102 YNS-------------LHVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQEL 147
YNS +H + M +G PD T++ L++A+ + A E+
Sbjct: 198 YNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEM 257
Query: 148 SDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ G P V A +V++M + VP + T+ LI + KSG
Sbjct: 258 KENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGR- 316
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSLGQFD---DA 240
+++A+ + N+++DG K L LG+ D +A
Sbjct: 317 ---------------------VEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEA 355
Query: 241 FCFFSEMQIKTHPPNRPVY 259
F EM++ PN Y
Sbjct: 356 VELFEEMRLLNCTPNVVTY 374
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 43/201 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVRMIRK 115
+I G+ + AVE+F + NC V+ YN++ RM +
Sbjct: 342 LINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKD 401
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G VP T++IL++ +C + ++ +A L+E+ +KGF P +A
Sbjct: 402 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAA 461
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
++ ++ + + + +I+ K G +LG DV I
Sbjct: 462 NELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITG 521
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
+ + M+DEAF L + E+G
Sbjct: 522 MVRADMMDEAFSLFRTMEENG 542
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+ +++I+ FGK G + A+ +FN+ C V YN+L VR
Sbjct: 478 RVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRT 537
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M G PD +H I++N +G + A E ++ P S
Sbjct: 538 MEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGL 597
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +++ +M +G DL T++S++E + K E
Sbjct: 598 FEEATKLMKEMNSKGFEYDLITYSSILEAVGKVDE 632
>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
Length = 225
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTI 126
+D AVE+ + + V++Y+SL C FV M KG PD +T
Sbjct: 45 VDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTG 104
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
L+++ C GK ++A + + +G P V + ++N M K+GSV + I +
Sbjct: 105 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKE------AIGVLK 158
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
K E G+ DV T I +S +DEA LL +V
Sbjct: 159 KMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV 196
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 29/140 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
+ MI K PD T L+ +C G+++EA E+ K NP V +
Sbjct: 222 YSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCK 281
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNT 199
AK M+ M+KQG +PD+ T++SL++ C E LG+ ++
Sbjct: 282 DGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHS 341
Query: 200 NKISIPAVSKEFMIDEAFRL 219
I I + K M+DEA L
Sbjct: 342 YNIMINGLGKIKMVDEALSL 361
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 44/190 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK--- 168
M+++G +PD T++ L++ +C ++ +A+ +S G P S M+N + K
Sbjct: 295 MMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKM 354
Query: 169 -------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+G PD T+NSLI+ +CK G + G+ AD+ T
Sbjct: 355 VDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNS 414
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSEMQI 249
I + K ID+A L+ + + G + PS+ ++ D C F ++ I
Sbjct: 415 LIDVLCKNHHIDKAIALVKKIKDQG--IQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLI 472
Query: 250 KTHPPNRPVY 259
K + N Y
Sbjct: 473 KGYSVNAWTY 482
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------- 152
F M KG PD T+ L++ C G++ A + + E+ + G
Sbjct: 362 FKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCK 421
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
N + A +V K+ QG P + T+N LI+ +CK G L G + T
Sbjct: 422 NHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWT 481
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I + KE + +EA LL + +G
Sbjct: 482 YNIMINGLCKEGLFNEAEVLLSKMENNG 509
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 35/167 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F ++++ G+ P T L+N C +GK++EA F + GF+ S + ++N + K
Sbjct: 117 FAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCK 176
Query: 169 QGSV----------------PDLETFNSLIETICK----SGELGLCADVNTNKISIPAVS 208
G D+ +N +I ++CK S L +++ T +IS V+
Sbjct: 177 IGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVT 236
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+I F +GQ +AF F EM +K P+
Sbjct: 237 FNSLILG---------------FCVVGQLKEAFGLFHEMVLKNINPD 268
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 35/188 (18%)
Query: 46 LSMWKTI--ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
LS++K + + + PD++ T + +I+ K G I A ++ ++ +L YN
Sbjct: 359 LSLFKEMCCKGIAPDTV-----TYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYN 413
Query: 104 SL------------HVCFVRMIR-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
SL + V+ I+ +G P T+ IL++ C G+++ AQ+ Q+L K
Sbjct: 414 SLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIK 473
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
G++ + M+N + K+G + E S +E N I AV+ E
Sbjct: 474 GYSVNAWTYNIMINGLCKEGLFNEAEVLLSKME---------------NNGIIPDAVTYE 518
Query: 211 FMIDEAFR 218
+I FR
Sbjct: 519 TIIRALFR 526
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 57/271 (21%)
Query: 25 VRHDIYAERTLNRLN-LTLISELSMWKTIELMKPDSLSVFPQTL--SLIIEEFGKHGLID 81
VR+D Y + ++NRLN L L ++++ + +P FP + S ++ K D
Sbjct: 45 VRYD-YRKISINRLNDLKLDDAVNLFGDMVKSRP-----FPSIVEFSKLLSAIAKMNKFD 98
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILV 128
+ + + + Y+ L CF R M++ G+ PD T L+
Sbjct: 99 LVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLL 158
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSV 172
N +C ++ +A + ++ + G+ P A +V++M+ +G
Sbjct: 159 NGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 173 PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
PDL T+ ++ +CK G+ L L + KI V +ID LCN
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA----LCN------ 268
Query: 229 KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+DA F+EM K PN Y
Sbjct: 269 -----YKNVNDALNLFTEMDNKGIRPNVVTY 294
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++ K G ID A+ + K + V++YN++ +C F M
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG P+ T+ L+ C+ G+ +A L ++ ++ NP V +
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETIC 186
A+++ ++MIK+ PD+ T++SLI C
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 55/248 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVR 111
T S +I+ F K G + A +++++ + + Y+SL H+ F
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM-FEL 386
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPP 155
MI K P+ T+ L+ +C + ++ E E +E+S +G
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+A+ + +M+ G +PD+ T++ L++ +C +G++ + D+ T I
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKT 251
I + K +++ + L C+L G K F G ++A F EM+ +
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566
Query: 252 HPPNRPVY 259
P+ Y
Sbjct: 567 PLPDSGTY 574
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 20/138 (14%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------- 156
V F + R PD T+ I++ C +GK+ + + LS KG P V
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Query: 157 ------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
A + +M ++G +PD T+N+LI + G+ A++ S V
Sbjct: 547 CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 606
Query: 211 FMIDEAFRLLCNLVEDGH 228
I L+ N++ DG
Sbjct: 607 STIG----LVTNMLHDGR 620
>gi|297805650|ref|XP_002870709.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316545|gb|EFH46968.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 608
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 58/218 (26%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKC-------TAFNC-------------QQCVLLYN 103
P ++++ + K GL+++ F K + C + C +YN
Sbjct: 164 PVVFDMLVKGYLKLGLVEDGFSTFRKVIDSGFRVSVVTCNHLLNGLLKLDLMEDCWQVYN 223
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M R G P+ T IL N +C++ E +FL+++ ++GF P + + +V
Sbjct: 224 V-------MCRVGIHPNTYTFNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNTLV 276
Query: 164 NKMIKQGS----------------VPDLETFNSLIETICKSGEL-------------GLC 194
+ ++G VPDL T+ SLI+ +CK G + G+
Sbjct: 277 SSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIK 336
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
D + I A KE M+ ++ +LL ++ G+ + P
Sbjct: 337 PDCMSYNTLIYAYCKEGMMQQSKKLLHEML--GNSVVP 372
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 20/122 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M R+ VPD T+T L+ C G++REA + + D+G P S
Sbjct: 295 MYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGM 354
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEF 211
+K+++++M+ VPD T ++E + G L ++ K+ IP +F
Sbjct: 355 MQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLAAVNFVVELRRLKVIIPIEVCDF 414
Query: 212 MI 213
+I
Sbjct: 415 LI 416
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
H F RM+ +G PD ++ L+ A+C G M+++++ L E+ P + K +V
Sbjct: 324 HQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEG 383
Query: 166 MIKQGS----------------VPDLETFNSLIETICKSGE 190
+++G + +E + LI+++C+ G+
Sbjct: 384 FVREGRLLAAVNFVVELRRLKVIIPIEVCDFLIKSLCQEGK 424
>gi|224576649|gb|ACN56998.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C GL + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CXFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKRME 154
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 82/190 (43%), Gaps = 42/190 (22%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV+ F + +NC V +N++ H ++RM +G
Sbjct: 83 MKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGV 142
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
D T+TI + ++C + + A L+ + + G + + A++
Sbjct: 143 QSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARE 202
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVS 208
+ ++M+ + PD+ FN L+ +CK G + G+C ++ T I + +
Sbjct: 203 LFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLC 262
Query: 209 KEFMIDEAFR 218
+E +D A R
Sbjct: 263 REGALDRAVR 272
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 43/205 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T +L+I K G + +A + + A C + YN+L + RM
Sbjct: 402 TYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRM 461
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+G PD T+ L+N C +GK E E + + +KG P V
Sbjct: 462 WSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKV 521
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------------GLCADVNTNKI 202
A ++ +M +G PD+ +F +L CK G++ +C T I
Sbjct: 522 NEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNI 581
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
+ A S++ ++ A +L + G
Sbjct: 582 IVSAFSEQLNMNMAMKLFSVMKNSG 606
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 43/150 (28%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
+PD L T + II+ + K G++ +A V + K
Sbjct: 292 EPDDL-----TYNSIIDGYCKKGMVQDANRVLKDA----------------------VFK 324
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSA 159
GF PD+ T+ L+N +C G A ++ KG P + A
Sbjct: 325 GFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPA 384
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG 189
Q++N+M + G +P++ T+N +I +CK G
Sbjct: 385 LQLMNEMAENGCLPNIWTYNLVINGLCKMG 414
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
+ L + + + + DS +V T+ + + G+H D+A E+F++ A V+ +N
Sbjct: 164 AALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEH---DHARELFDEMLARCLCPDVVAFN 220
Query: 104 SL-HVC------------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150
L HV +++++G P+ T I V C G + A
Sbjct: 221 KLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVR-------- 272
Query: 151 GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
N V A++ + KM+ G PD T+NS+I+ CK G + + N++ AV K
Sbjct: 273 --NSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQ-----DANRVLKDAVFKG 325
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F DE C+L+ F G D A F + K P+ +Y
Sbjct: 326 FKPDEF--TYCSLING----FCKDGDPDRAMAVFKDGLGKGLRPSIVLY 368
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M+ GF PD T+ +++ +C G +++A L++ KGF P + ++N K G
Sbjct: 285 KMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDG 344
Query: 171 SVPDLETFNSLIETICKSG-ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
PD + K G GL + I +S++ +I A +L+ + E+G
Sbjct: 345 D-PDRAM------AVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENG 395
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 43/163 (26%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK-----------------CTAFNCQQ 97
+KPD +S + F K G ID A ++F + +AF+ Q
Sbjct: 536 LKPDVVS-----FGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQ- 589
Query: 98 CVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-- 155
L N F M G PD T+ ++++ +C G + + +FL E +K F P
Sbjct: 590 --LNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLT 647
Query: 156 --------------VRSAKQMVNKMIKQGSVPDLETFNSLIET 184
V A +++ M+++G VP ET N++ E
Sbjct: 648 TFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVP--ETVNTIFEA 688
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 62/198 (31%)
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
YN+L V F R MIR GFV D T+ L+ +C S +++A ++
Sbjct: 695 YNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQML 754
Query: 149 DKGFNPPVRSAK----------------QMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
++G +P + + ++ +KM + G PD T+++LI K G
Sbjct: 755 NEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIG--- 811
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAF 241
NK E+ RL C +V G F +G+ D A
Sbjct: 812 -------NK------------KESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQAR 852
Query: 242 CFFSEMQIKTHPPNRPVY 259
+EMQ++ PP+ Y
Sbjct: 853 ELLNEMQVRGVPPSSSTY 870
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ MI GF+PD T++ +VN C G++ EAQE L+E+ G +P + +++ + K
Sbjct: 261 YEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFK 320
Query: 169 QGS 171
GS
Sbjct: 321 AGS 323
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 22/139 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F + + +P+ T+T L++ +C G M + LQE+ +K NP V + ++N
Sbjct: 366 FRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTK 425
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSGELGLCADV-NTNKISIPAVSKEF 211
KM+ Q +P+ + LI+ CK+G+ + D+ N K+S V+
Sbjct: 426 KGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVL 485
Query: 212 MIDEAFRLLCNLVEDGHKL 230
F +L N ++ G ++
Sbjct: 486 -----FDVLVNNLKRGKRM 499
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 97/271 (35%), Gaps = 102/271 (37%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S II + K G++D A+ V K M+ + +P+ +
Sbjct: 415 TYSSIINGYTKKGILDEAINVMKK----------------------MLDQNIIPNAYVYA 452
Query: 126 ILVNAWCSSGK-----------------------------------MREAQEFLQELSDK 150
IL++ +C +GK M EA+E L++++ +
Sbjct: 453 ILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSR 512
Query: 151 G---------------FNPPVRSAK-QMVNKMIKQGSVP-DLETFNSLIETICKSG---- 189
G F SA MV +M ++ S+P D+ T+N LI + + G
Sbjct: 513 GLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEK-SIPFDVVTYNVLINGLLEHGKYEA 571
Query: 190 --------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------- 233
E+GL + T I I A K+ +D A L + HK+ PS
Sbjct: 572 KSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEM--KSHKIMPSSITCNTLV 629
Query: 234 -----LGQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ + A +EM + PN ++
Sbjct: 630 VGLSEAGEIEKAMNVLNEMSVMGIHPNLVIH 660
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
MK + L+ T +I +GK G N ++ + LY M+
Sbjct: 788 MKENGLNPDASTYDTLISGYGKIG---------------NKKESIRLY-------CEMVA 825
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+GFVP T+ +L++ + GKM +A+E L E+ +G P + ++ PD
Sbjct: 826 QGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPD 885
Query: 175 LE 176
L+
Sbjct: 886 LD 887
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 37/118 (31%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-KGFNPPV------------- 156
RM ++G + D ++ L+N +C G+ +A+ L E+S+ +G V
Sbjct: 172 RMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDN 231
Query: 157 -----------------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+ + +MI G +PD+ T++S++ +CK G L
Sbjct: 232 LNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRL 289
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 38/155 (24%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
++L++ + V T + +I F +HGL++ A + L +
Sbjct: 65 LDLLRNVDVEVDTVTYNTVIWGFCQHGLVNQA------------------FGFLSI---- 102
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------ 158
M++K D T ILV +C G + + + L G FN +
Sbjct: 103 MVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGE 162
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A +V +M K+G + D+ ++N+LI CK GE
Sbjct: 163 MSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGE 197
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 53/243 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +I+ GK G +D A +F K ++Y SL H F +
Sbjct: 326 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKEL 385
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
IR+G PD ++ +G++ + + +++ GF P VRS +++ + K
Sbjct: 386 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA 445
Query: 169 ------------QGSVPDLETFNSLIETICKSGELGLCAD-------------VNTNKIS 203
QG D +N++++ CKSG++ + V T
Sbjct: 446 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI 505
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTH 252
+ ++K +DEA+ L G +L F +G+ D+A+ EM K
Sbjct: 506 VDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 565
Query: 253 PPN 255
PN
Sbjct: 566 TPN 568
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 29/175 (16%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRMIR 114
S +I+ FGK G ID A + + V +NSL VCF M
Sbjct: 538 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 597
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK------ 168
P+ T++IL+N C K +A F Q++ +G P V + M++ + K
Sbjct: 598 MKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITD 657
Query: 169 ----------QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
G +PD +FN+LIE + + ++S + S F++
Sbjct: 658 AYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQTTVYQLSSSSCSWNFLV 712
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M ++GF D R + +V+ +C SGK+ +A E L+E+ +K P V + +V+ + K
Sbjct: 452 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 511
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG- 227
+ L+ L E ++ G+ +V I K IDEA+ +L +++ G
Sbjct: 512 ---IDRLDEAYMLFE---EAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 565
Query: 228 -------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ L +L + ++A F M+ PPN Y+
Sbjct: 566 TPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 608
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 44/188 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------MIRKGF 117
+I +G G ++A ++ + C V+ +NS+ C + +++K
Sbjct: 191 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA 250
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET 177
P+ T+ I+++ C G++ EA L E+ P+L T
Sbjct: 251 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASL-------------------FPNLLT 291
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
N +++ +CK+ +L G D T I + K+ +DEA+RL ++
Sbjct: 292 VNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 351
Query: 225 EDGHKLFP 232
+ GH P
Sbjct: 352 DAGHNANP 359
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 62/246 (25%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
I+ FGK G +D A + F++ A + + Y S+ F +M +
Sbjct: 122 IDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS 181
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------- 164
VP + ++ + S+G+ +A + L+ L ++G P V S ++
Sbjct: 182 VPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALS 241
Query: 165 --KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSK 209
+++K+ + P+ T+N +I+ +C G + L ++ T I + + K
Sbjct: 242 LFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 301
Query: 210 EFMIDEAFRLL---------------CNLVED-GHKLFPSLGQFDDAFCFFSEMQIKTHP 253
++EA+++ C+L++ G K GQ D+A+ F +M H
Sbjct: 302 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKK-----GQVDEAYRLFEKMLDAGHN 356
Query: 254 PNRPVY 259
N VY
Sbjct: 357 ANPVVY 362
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/221 (17%), Positives = 92/221 (41%), Gaps = 43/221 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M+ V + ++ + G + +A+ + ++ + ++LYN CF +
Sbjct: 71 MQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGN 130
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK----------- 150
+ +G PD ++T ++ C +G++ EA+E ++ +
Sbjct: 131 VDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNT 190
Query: 151 ---GFNPPVR--SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV-------- 197
G+ R A +++ ++ ++G +P + +FNS++ + K ++ +
Sbjct: 191 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA 250
Query: 198 ----NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
+T I I + ++EA+R+L + + LFP+L
Sbjct: 251 EPNSSTYNIIIDMLCLGGRVEEAYRILDEM--EHASLFPNL 289
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
P+ T I+V+ C + K+ EA + + S +G NP + +++ + K+G V E +
Sbjct: 287 PNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD--EAY 344
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
L E + +G N N + ++ + F I EDGHK+F L
Sbjct: 345 R-LFEKMLDAGH-------NANPVVYTSLIRNFFIH-------GRKEDGHKVFKEL 385
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
MK ++ + + +++ F K G + A E+ + Q V Y ++
Sbjct: 455 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 514
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
++ F KG + ++ L++ + G++ EA L+E+ KG P V +
Sbjct: 515 LDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 574
Query: 162 MVNKMIKQGSVPD-LETFNSLIETIC 186
+++ ++K + + L F S+ E C
Sbjct: 575 LLDALVKAEEINEALVCFQSMKEMKC 600
>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g07740, mitochondrial-like [Cucumis sativus]
Length = 460
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 53/238 (22%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
+P+S+S +++I+ + K G + A +F++ Q V+ YNS
Sbjct: 183 RPNSVSY-----NIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSXLGVLCRKGEM 237
Query: 106 --HVC-FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE---------------- 146
+C F M KG P+ T+ +L+ WC GK +EA++ + +
Sbjct: 238 DTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPVNYGVL 297
Query: 147 LSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKI 202
++ G + + ++N+M K+ PD+ T+N L+ +CK G++G + +
Sbjct: 298 MTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKMQVGGC 357
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
A + MID CN G FD A + M + H P+ +A
Sbjct: 358 DPNAATYRMMIDG----YCN-----------AGDFDGAMKILNAMLMSGHYPHLKTFA 400
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 56/227 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNC----QQCVLLYNSLHVC---------FVRMIRKG 116
+I+ +GK L++ +E+F++ +FNC Q +L N+L C F + G
Sbjct: 122 LIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIFQQAYEMG 181
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
F P+ ++ I++ W G +A E+ +KG P V
Sbjct: 182 FRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSV-------------------V 222
Query: 177 TFNSLIETICKSGEL--GLCADVN-TNKISIP-AVSKEFMID---------EAFRLLCNL 223
T+NS + +C+ GE+ LC N T K P AV+ +++ EA +L+ ++
Sbjct: 223 TYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDM 282
Query: 224 VEDGHKLFP-----------SLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G KL P G D+ +EM+ + P+ Y
Sbjct: 283 EFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTY 329
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 32/138 (23%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FV 110
P +++ GK G ID + N+ + V+ YN L ++C V
Sbjct: 291 PVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLV 350
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M G P+ T+ ++++ +C++G A +++N M+ G
Sbjct: 351 KMQVGGCDPNAATYRMMIDGYCNAGDF-------------------DGAMKILNAMLMSG 391
Query: 171 SVPDLETFNSLIETICKS 188
P L+TF SL+ + K
Sbjct: 392 HYPHLKTFASLVVGLLKG 409
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
++PD++ T + +I+ + K +D A+E+ A + Y +L
Sbjct: 411 LRPDTV-----TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 465
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M+ G PD T+T++++A+C G ++ L+E+ +KG P V
Sbjct: 466 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 525
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
++A ++N MI G PD T+N L++ CK G++ ++ + K ++P
Sbjct: 526 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTVP 585
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 44/193 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F +M +G P+ TIL++A C G E +E+ ++G P
Sbjct: 333 FEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCR 392
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS--------- 203
++SA +V +M G PD T+ +LI+ CK EL + ++ N ++
Sbjct: 393 ARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVT 452
Query: 204 ----IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSE 246
I +SK +A R+L ++E G L P + DAFC E
Sbjct: 453 YTALISGLSKAGRSADAERVLGEMMEAG--LEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 510
Query: 247 MQIKTHPPNRPVY 259
MQ K P Y
Sbjct: 511 MQNKGRKPGVVTY 523
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+++++ G P+ + +L+ G++ AQ E+ +G V S M++ M +
Sbjct: 228 YLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR 287
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL 191
G + PD+ T+ +LI+ +C+ G +
Sbjct: 288 AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRI 326
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 40/250 (16%)
Query: 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKH-GLIDNAVEVFNKCTAFN 94
N+LNL +K + M+ L +L+++I+ ++ G +D +++F +
Sbjct: 135 NQLNLA-------FKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRG 187
Query: 95 CQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
C Y +L +C F M+ K P T+T L+N C S + EA
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAM 247
Query: 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTN 200
+L+E+ KG P V + +++ + K G S+ +E F ++ C+ ++ T
Sbjct: 248 RYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR-------PNMVTY 300
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQI 249
I + KE I EA LL + G K F ++ +F +A F EM +
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL 360
Query: 250 KTHPPNRPVY 259
PNR +
Sbjct: 361 GGITPNRLTW 370
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 35/176 (19%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
+ +E MK + T S +++ K G A+E+F A C+ ++ Y +L +
Sbjct: 248 RYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP- 155
C RM +G PD + +++ +C+ K REA FL E+ G P
Sbjct: 308 CKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNR 367
Query: 156 ------VRSAKQMVN---------------KMIKQGSVPDLETFNSLIETICKSGE 190
V+++ ++V M +G ++ET SL++ +CK GE
Sbjct: 368 LTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGE 423
>gi|341606821|gb|AEK83513.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 205
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 5 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 42
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 43 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 102
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 103 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 155
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ ++A F M+
Sbjct: 156 CYNALIDALTKHGKVNEAMTLFKRME 181
>gi|255685932|gb|ACU28455.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685936|gb|ACU28457.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685938|gb|ACU28458.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685940|gb|ACU28459.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685942|gb|ACU28460.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685944|gb|ACU28461.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685948|gb|ACU28463.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685952|gb|ACU28465.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685956|gb|ACU28467.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685958|gb|ACU28468.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 172
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 10 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 69
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + +
Sbjct: 70 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYE 129
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 130 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 162
>gi|399107214|gb|AFP20371.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + B+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + GL + I + K IDEA RL + E G
Sbjct: 108 ALDYFQTCXFN-------GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMXLFKRME 186
>gi|224576659|gb|ACN57003.1| At1g03560-like protein [Capsella grandiflora]
gi|224576663|gb|ACN57005.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ G + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GXAINSXFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 154
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 67/253 (26%)
Query: 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTL-----------SLIIEEFGKHGLIDNAV 84
+L +IS L +E+ K +VF L S II +G+ G + A+
Sbjct: 77 GKLASAMISTLGRLGKVEMAK----TVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAI 132
Query: 85 EVFNKCTAFNCQQCVLLYNS-LHVC-------------FVRMIRKGFVPDKRTHTILVNA 130
++F + + ++ YN+ + C F M+R G PD+ T L+ A
Sbjct: 133 KIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLL-A 191
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
CS G + EA L + +MVN+ I Q D+ T+N+L++ +CK G+
Sbjct: 192 VCSKGGLWEAARSL--------------SCEMVNRGIDQ----DIFTYNTLLDAVCKGGQ 233
Query: 191 LGLCADVNTN---KISIP-AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
L + ++ + K +P V+ MID + G+ DDA F+E
Sbjct: 234 LDMAFEIMSEMPAKNILPNVVTYSTMIDG---------------YAKAGRLDDARNLFNE 278
Query: 247 MQIKTHPPNRPVY 259
M+ +R Y
Sbjct: 279 MKFLGISLDRVSY 291
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 84/191 (43%), Gaps = 36/191 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
MK +S+ + + ++ + K G + A++V + ++ V+ YN+L + +
Sbjct: 279 MKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYK 338
Query: 112 --MIRKGF--------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--------- 152
++RK F P+ T++ L++ + G REA + +E G
Sbjct: 339 YDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSA 398
Query: 153 -------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------ELGLCADVN 198
N V SA ++++M K+G P++ T+NS+I+ + + G +++
Sbjct: 399 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQ 458
Query: 199 TNKISIPAVSK 209
+ +S AV K
Sbjct: 459 IDSLSSSAVEK 469
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KG PD T+ ++ +CSSG+ +A++ LQE+ ++ +P V + ++N +K
Sbjct: 278 FTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVK 337
Query: 169 QGS----------------VPDLETFNSLIETICKSGELGLCADV 197
+G +P+ T+NS+I+ CK L D+
Sbjct: 338 EGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 382
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+ +E G+I N + +N C+Q L ++ F M KG PD T T L++
Sbjct: 347 LYDEMLPRGIIPNTI-TYNSMIDGFCKQDRL--DAAEDMFYLMATKGCSPDVFTFTTLID 403
Query: 130 AWCSSGKMREAQEFLQELSDKG-------FNPPVR---------SAKQMVNKMIKQGSVP 173
+C + ++ + E L E+ +G +N + +A + +MI G P
Sbjct: 404 GYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCP 463
Query: 174 DLETFNSLIETICKSGEL 191
D+ T N+L++ +C +G+L
Sbjct: 464 DIVTCNTLLDGLCDNGKL 481
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 42/219 (19%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
+FP T + +I F G +A ++ + V+ YN+L FV+
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------- 156
M+ +G +P+ T+ +++ +C ++ A++ ++ KG +P V
Sbjct: 345 AELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG 404
Query: 157 -------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
+++++M ++G V + T+N+LI C G+L D++ IS V
Sbjct: 405 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCP 463
Query: 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
+ + CN + DG G+ DA F MQ
Sbjct: 464 DIVT-------CNTLLDG---LCDNGKLKDALEMFKAMQ 492
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ M +G VPD T++ +++ C ++ EA + + K F+P V + ++N K
Sbjct: 534 YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCK 593
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G V D +E C+ G G+ AD I K I+ A + ++ G
Sbjct: 594 AGRVDD------GLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG 646
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV--- 172
G PD T+ IL+ + GK EA+E +E+ +G P + M++ + KQ +
Sbjct: 506 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565
Query: 173 -------------PDLETFNSLIETICKSGEL 191
P++ TFN+LI CK+G +
Sbjct: 566 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV 597
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 29/150 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RMIR 114
S II+ K G +A +F + + YNS+ V F M+
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ----- 169
+ PD T+ L+NA+ GK EA E E+ +G P + M++ KQ
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 378
Query: 170 -----------GSVPDLETFNSLIETICKS 188
G PD+ TF +LI+ C +
Sbjct: 379 AEDMFYLMATKGCSPDVFTFTTLIDGYCGA 408
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 30/156 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------HVCFVRMIRK- 115
T + ++ + G I AV + ++ Q + Y ++ V + ++RK
Sbjct: 186 TFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM 245
Query: 116 ----GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
+P+ ++ ++++ C G+ +AQ E+ +KG P +
Sbjct: 246 EEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR 305
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+Q++ +M+++ PD+ T+N+LI K G+
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+ +M RK D + IL+ +CS K+ A +++ G +P V + +++ +
Sbjct: 102 YQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCV 161
Query: 169 QGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ V + L+ F+ + ET C+ +V T + + +E I EA LL ++EDG
Sbjct: 162 EDRVSEALDFFHQMFETTCR-------PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
++PD++ T + +I+ + K +D A+E+ A + Y +L
Sbjct: 287 LRPDTV-----TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 341
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M+ G PD T+T++++A+C G ++ L+E+ +KG P V
Sbjct: 342 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 401
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
++A ++N MI G PD T+N L++ CK G++ ++ + K ++P
Sbjct: 402 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTVP 461
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 44/193 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F +M +G P+ TIL++A C G E +E+ ++G P
Sbjct: 209 FEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCR 268
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS--------- 203
++SA +V +M G PD T+ +LI+ CK EL + ++ N ++
Sbjct: 269 ARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVT 328
Query: 204 ----IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSE 246
I +SK +A R+L ++E G L P + DAFC E
Sbjct: 329 YTALISGLSKAGRSADAERVLGEMMEAG--LEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 386
Query: 247 MQIKTHPPNRPVY 259
MQ K P Y
Sbjct: 387 MQNKGRKPGVVTY 399
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+++++ G P+ + +L+ G++ AQ E+ +G V S M++ M +
Sbjct: 104 YLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR 163
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL 191
G + PD+ T+ +LI+ +C+ G +
Sbjct: 164 AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRI 202
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIR--------- 114
T +++I F K+ ++D F + +FNC V+ YN+L +C +R
Sbjct: 221 TYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGM 280
Query: 115 ----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
+G P+ T+T L+ +C ++ EA L+E++ +G P
Sbjct: 281 GKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAH 340
Query: 155 PVRSAKQMVNKMIKQGSV-PDLETFNSLIETICKSGELGLCADV--NTNKISIPAVSKEF 211
+ K ++ +M G PD TFN++I C +G L V + K IPA S +
Sbjct: 341 KLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASY 400
>gi|224576615|gb|ACN56981.1| At1g03560-like protein [Capsella rubella]
gi|224576617|gb|ACN56982.1| At1g03560-like protein [Capsella rubella]
gi|224576619|gb|ACN56983.1| At1g03560-like protein [Capsella rubella]
gi|224576621|gb|ACN56984.1| At1g03560-like protein [Capsella rubella]
gi|224576623|gb|ACN56985.1| At1g03560-like protein [Capsella rubella]
gi|224576627|gb|ACN56987.1| At1g03560-like protein [Capsella rubella]
gi|224576629|gb|ACN56988.1| At1g03560-like protein [Capsella rubella]
gi|224576635|gb|ACN56991.1| At1g03560-like protein [Capsella rubella]
gi|224576637|gb|ACN56992.1| At1g03560-like protein [Capsella rubella]
gi|224576647|gb|ACN56997.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ G + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GFAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 154
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 41/172 (23%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RM++ G P+ T+T LV+ +CSSG++ EA +FL+++ G P V +
Sbjct: 258 RMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNG 317
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A+++ M+K+G PD+ T++SL+ G L V + + V + D
Sbjct: 318 RCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGAL-----VEMHGLFDLMVQSDMQPD 372
Query: 215 EAFRLLCNLVEDGHKLFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
H +F +L G+ D+A FS+M+ + PN Y
Sbjct: 373 -------------HYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTY 411
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 21/168 (12%)
Query: 109 FVRMIRKG---FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
F RM R G P T+ IL+ CS+G++ L + KGF R + N
Sbjct: 75 FNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGF----RVEPIIFNP 130
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
++K G D T +++ + ELG +V ++ I + + E EA LL + +
Sbjct: 131 LLK-GLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMAD 189
Query: 226 DGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
DG P++ G D A+ + EM + PN Y+
Sbjct: 190 DGGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYS 237
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 29/176 (16%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + M G VP+ +HTI++ C + +EA E L ++D G P V S
Sbjct: 143 DAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYS 202
Query: 161 QMVNKMIKQGS----------------VPDLETFNSLIETICKSGELGLCADVNTNKISI 204
+ + ++K G +P++ T++S+I +CK + +V+ +
Sbjct: 203 TVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKN 262
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
F C S GQ +A F +M PN Y+
Sbjct: 263 GVTPNCFTYTSLVHGFC-----------SSGQLTEAIKFLEKMCSNGVEPNVVTYS 307
>gi|341606823|gb|AEK83514.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 5 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 42
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 43 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 102
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 103 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 155
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ ++A F M+
Sbjct: 156 CYNALIDALTKHGKVNEAMTLFKRME 181
>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
Length = 489
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 102/248 (41%), Gaps = 56/248 (22%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW + +M+ + ++ +T +I+ ++ + +D AV FN + + +NSL
Sbjct: 125 MWDVVAIMRKEGVANV-ETFGIIMRKYARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLLS 183
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C + +RK F PD +T++IL+ W G P
Sbjct: 184 ALCKSKNVRKAQEIFDKMNNRFSPDAKTYSILLEGW-------------------GRAPS 224
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG--ELGLCA--DVNTN---------KI 202
+ +++ + M+ G PD+ T+ +++ +CK+G E +C D+++ I
Sbjct: 225 LPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSI 284
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKT 251
+ + I++A ++ +DG F + +F++AF +MQ
Sbjct: 285 LVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHG 344
Query: 252 HPPNRPVY 259
PN +
Sbjct: 345 ISPNSRTW 352
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-H------------VCFVRM 112
T ++++ K G ++ AV V ++ CQ +Y+ L H F+ M
Sbjct: 246 TYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDM 305
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS- 171
+ G +PD + L+ A+C K A + ++ G +P R+ ++N +I G
Sbjct: 306 EKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKD 365
Query: 172 --------------VPDLETFNSLIETICKSGELGLCADV 197
PD +T+ +I+ C++ ++ + V
Sbjct: 366 DEAYRVFRSMIKRCKPDSDTYTMMIKMFCENDKIEMALKV 405
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 27/119 (22%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
I+ KPDS T +++I+ F ++ I+ A++V+ ++R
Sbjct: 376 IKRCKPDS-----DTYTMMIKMFCENDKIEMALKVWK--------------------YMR 410
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+ K F+P T ++L+N C G++ +A L+++ +KG PP + ++ ++K+G
Sbjct: 411 L--KQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEG 467
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 30/208 (14%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKR 122
+ G +D A VF+ + V+ Y+ L F RM+ + VP
Sbjct: 500 RQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDF 559
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLI 182
T+ I +N C G+ EAQ+ L++ +KGF P + +++ IK+GSV T
Sbjct: 560 TYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALT---AY 616
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-FPSLGQFDDAF 241
+C+S G+ +V T I K D A ++ + G +L + G D F
Sbjct: 617 REMCES---GVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGF 673
Query: 242 C----------FFSEMQIKTHPPNRPVY 259
C FSE+ PN +Y
Sbjct: 674 CKKQDIETASWLFSELLDGGLSPNSVIY 701
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 40/223 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + I++ F K G + +A+ + + V+ Y +L F + M
Sbjct: 595 TYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEM 654
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
KG D + L++ +C + A EL D G +P +
Sbjct: 655 RNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNM 714
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
+A + +M+ +G DL+T+ +LI+ + K G L L D+ + ++S + + +I
Sbjct: 715 EAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYS-EMSAKGIIPDIII--- 770
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ +L N + GQ ++A +EM+ + PN P+Y
Sbjct: 771 YTVLINGL-------CGKGQLENAQKILAEMERDSITPNVPIY 806
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
+ M KG +PD +T+L+N C G++ AQ+ L E+ P V
Sbjct: 756 YSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFK 815
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
+ A ++ N+M+ +G P+ T++ LI K G L
Sbjct: 816 AGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGNSAL 856
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 24/141 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD--------------KGF--NPP 155
M KG+VP + T T ++ A G M EA E+ KG+
Sbjct: 305 MRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDK 364
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT---NKISIPAVSKEFM 212
+ SA + +KM + G P+ T+ LIE CK+G + D+ T NK P V F+
Sbjct: 365 LVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTV---FI 421
Query: 213 IDEAFR--LLCNLVEDGHKLF 231
++ R L E+ KLF
Sbjct: 422 VNSLIRGFLKVESREEASKLF 442
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM-----IRKGF--- 117
T +++IE K+G + A +++ + N V + NSL F+++ K F
Sbjct: 386 TYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEA 445
Query: 118 ----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV- 172
+ + T+ L++ C GKM EA Q++ DKG P S M+ +QG++
Sbjct: 446 VACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLD 505
Query: 173 ---------------PDLETFNSLIETICKSGE 190
P++ T++ L++ K+G+
Sbjct: 506 MAASVFSDMLDCGLKPNVITYSILMDGYFKNGD 538
>gi|255685750|gb|ACU28364.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A LQ + D+GF P V + +
Sbjct: 3 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVV 62
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K +DEA RL
Sbjct: 63 VNGLCKNGRVEEALDYFKT-----CRFN--GLAINSMFYSSLIDGLGKVGRVDEAERLFE 115
Query: 222 NLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+ E G F G+ ++A F M+
Sbjct: 116 EMSEKGCTRDSYCYNALIDAFTKHGKVNEAVALFKRME 153
>gi|341606827|gb|AEK83516.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 207
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 5 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 42
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 43 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 102
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 103 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 155
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ ++A F M+
Sbjct: 156 CYNALIDALTKHGKVNEAMTLFKRME 181
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 46/246 (18%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN--- 103
S + + LM+ ++ S +T + +I F + I A+ + +K Q V+ YN
Sbjct: 397 SALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILI 456
Query: 104 ----------SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
S + M G VPD+ T+++ ++ C G + EA+ + L +KG
Sbjct: 457 HGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIK 516
Query: 154 P----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS---GELGLC 194
V + +++KM+ G VP+ T+NSLI+ CK E L
Sbjct: 517 ANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLL 576
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
D+ + PA D L+ NL++D +FD A F +M P
Sbjct: 577 VDIMIKRDIEPAA------DTYTILIDNLLKD--------DEFDQAHDMFDQMLSTGSHP 622
Query: 255 NRPVYA 260
+ +Y
Sbjct: 623 DVFIYT 628
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F +M P RT+T+++ A C G+ EA +E+++K P V +
Sbjct: 297 FSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCE 356
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
AK+++N M+++G +P + T+N+LI+ CK G
Sbjct: 357 DSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKG 393
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 42/200 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+I F + +D A+++F++ NC V Y + +C F M K
Sbjct: 280 LIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKH 339
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG------ 170
P+ T+T+L+ + C +A++ L + +KG P V + +++ K+G
Sbjct: 340 CQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASAL 399
Query: 171 ----------SVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAV 207
P+ T+N LI C+ E L +V T I I
Sbjct: 400 EILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQ 459
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
KE + A++LL + E G
Sbjct: 460 CKEGDLGSAYKLLSLMNESG 479
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 72/188 (38%), Gaps = 19/188 (10%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR- 111
E +K + S +I+ + K G + + + +K + C + YNSL + +
Sbjct: 508 ESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKE 567
Query: 112 ------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
MI++ P T+TIL++ + +A + ++ G +P V
Sbjct: 568 KNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIY 627
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++ G + D E ICK G+ D + I A + ID AF +
Sbjct: 628 TAFIHAYCSHGRLKDAEVL------ICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGI 681
Query: 220 LCNLVEDG 227
L + E G
Sbjct: 682 LKRMHEVG 689
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------- 154
++ H F +M+ G PD +T ++A+CS G++++A+ + +++ KG P
Sbjct: 605 FDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTL 664
Query: 155 ---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
+ A ++ +M + G P T++ LI+ +
Sbjct: 665 FIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHL 704
>gi|302791469|ref|XP_002977501.1| hypothetical protein SELMODRAFT_50901 [Selaginella moellendorffii]
gi|300154871|gb|EFJ21505.1| hypothetical protein SELMODRAFT_50901 [Selaginella moellendorffii]
Length = 233
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 15/144 (10%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------- 110
+V P T S ++E + GL+D+A + + A +C V Y SL F
Sbjct: 73 AVLPDIVTFSTLVEGYCNAGLVDDAKRLLEEMVASDCSPDVYTYTSLVDGFCKVRRLVEV 132
Query: 111 -----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
RM ++G P+ T+T L++A+C +GK A + L+E+ G P V + + ++
Sbjct: 133 RRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIVM 192
Query: 166 MIKQGSVPDLETFNSLIETICKSG 189
M + + L+E I +SG
Sbjct: 193 MDRLCRTGRMSAVLELLEAIKQSG 216
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 31/156 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCF-------------V 110
T + +I F +D+ + + + TA C ++ YN+L +C V
Sbjct: 8 TYNSLIHGFCMANRVDSTLLLMEEMTATGCLPDIITYNTLIDGLCKAGKEMKAKFCNPDV 67
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
++ +PD T + LV +C++G + +A+ L+E+ +P V + +V+
Sbjct: 68 ITYKQAVLPDIVTFSTLVEGYCNAGLVDDAKRLLEEMVASDCSPDVYTYTSLVDGFCKVR 127
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGE 190
+M K+G P++ T+ +LI+ C++G+
Sbjct: 128 RLVEVRRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 163
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 38/158 (24%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K ++ M L V T +++I+ + K G + A ++ N
Sbjct: 417 KLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNA-------------------- 456
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M+++G P+ T+T L + C G ++ A E L E+S+KG + ++N + K
Sbjct: 457 --MVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKA 514
Query: 170 GSV----------------PDLETFNSLIETICKSGEL 191
G + PD+ T+ +LI+ +CKSG+L
Sbjct: 515 GYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDL 552
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--------------- 153
F M RKG D T+T ++N C + ++ EA++ LQE+ + +
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCK 443
Query: 154 -PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A QM N M+++G P++ T+ +L + +CK G++
Sbjct: 444 RGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDV 482
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQM 162
PD T+T L++A C SG + A LQE+ DKG P V K++
Sbjct: 534 PDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKL 593
Query: 163 VNKMIKQGSVPDLETFNSLIETIC 186
++ M+++ P+ T+NSL++ C
Sbjct: 594 LDWMLEKNIHPNAATYNSLMKQYC 617
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 35/176 (19%)
Query: 80 IDNAVEVFNKCTAFN-CQQCVLLYNSLHVCFVRMIRKGF-----VPDKRTHTILVNAWCS 133
+D A+E+F + N C +LL V+ R+ F PD T+ IL++ C+
Sbjct: 244 LDEAIELFQELPHKNVCSYNILLKALCDAGRVKDARQLFDEMASAPDVVTYGILIHGHCA 303
Query: 134 SGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLET 177
G++ A + L E+ G P + A ++V M+++ + D
Sbjct: 304 LGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEAL 363
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ +++ C G+L GL D T I + + ++EA +LL
Sbjct: 364 YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLL 419
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 62 VFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV---- 107
+FP T S +I+ K G I A+E+ ++ Q ++ YNS+ HV
Sbjct: 504 IFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAI 563
Query: 108 -CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
++ +G PD T+TILV C SGK+ +A++ ++L KG+N V + M+
Sbjct: 564 TLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGF 623
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+G F+ + + K E G D T +I I ++ ++ D A +LL ++
Sbjct: 624 CDKG------LFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMR 677
Query: 227 G 227
G
Sbjct: 678 G 678
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 51/192 (26%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
Q+ +++I F K ++D A+++F + M K PD T+
Sbjct: 474 QSYNIMINGFCKIKMVDEAMKLFKE----------------------MHHKQIFPDVITY 511
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIK 168
+ L++ C SG++ A E + E+ +G P V A ++ K+
Sbjct: 512 SSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKG 571
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
QG PD+ T+ L++ +C+SG+L G DV + I + + DE
Sbjct: 572 QGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDE 631
Query: 216 AFRLLCNLVEDG 227
A LL + E+G
Sbjct: 632 ALALLSKMEENG 643
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 59/246 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV-----CFVRMIRKG 116
+I K G A+E+ + Q V++YN++ HV + + K
Sbjct: 304 LINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKR 363
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
PD T+ L++ +C GK+++A + +++ K P V + AK
Sbjct: 364 IFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAK 423
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
++ M+KQ PD+ T++SL++ C E+ G+ A+V + I I
Sbjct: 424 NVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGF 483
Query: 208 SKEFMIDEAFRLLCNLVEDGHK-LFPSL-------------GQFDDAFCFFSEMQIKTHP 253
K M+DEA +L E HK +FP + G+ A EM +
Sbjct: 484 CKIKMVDEAMKL---FKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQ 540
Query: 254 PNRPVY 259
P+ Y
Sbjct: 541 PDIITY 546
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 96 QQCVLLYNSLHVCFV--RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
Q+C+L + + + ++++ G+ PD T T + +C G++ +A F ++ GF+
Sbjct: 236 QKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFH 295
Query: 154 PPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCADV 197
S ++N + K G PD+ +N++I+ +CK + D+
Sbjct: 296 LDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDL 355
Query: 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ K+S F + C +G+ DA F++M K P+
Sbjct: 356 YSEKVSKRIFPDVFTYNALISGFC-----------IVGKLKDAIDLFNKMTSKNIIPD 402
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 40/250 (16%)
Query: 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKH-GLIDNAVEVFNKCTAFN 94
N+LNL +K + M+ L +L+++I+ ++ G +D +++F++
Sbjct: 135 NQLNLA-------FKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRG 187
Query: 95 CQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
C Y +L +C F M+ K P T+T L+N C S + EA
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAM 247
Query: 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTN 200
+++E+ KG P V + +++ + K G S+ +E F ++ C+ ++ T
Sbjct: 248 RYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR-------PNMVTY 300
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQI 249
I + KE I EA LL + G K F ++ +F +A F EM +
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMIL 360
Query: 250 KTHPPNRPVY 259
PNR +
Sbjct: 361 GGITPNRLTW 370
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 35/177 (19%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
+ +E MK + T S +++ K G A+E+F A C+ ++ Y +L +
Sbjct: 248 RYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP- 155
C RM +G PD + +++ +C+ K REA FL E+ G P
Sbjct: 308 CKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNR 367
Query: 156 ------VRSAKQMVN---------------KMIKQGSVPDLETFNSLIETICKSGEL 191
V+++ ++V M +G ++ET +SL++ +CK GE
Sbjct: 368 LTWNIHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEF 424
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 44/181 (24%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+++ G P K ++ ILVNA+C G +++A +++ ++G P
Sbjct: 348 LAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCE 407
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC---------ADVNTNKIS 203
V A+ V +M+++G P +ET+NSLI + G C A + N IS
Sbjct: 408 TGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVIS 467
Query: 204 ----IPAVSKEFMIDEAFRLLCNLVEDGHKLFP-------------SLGQFDDAFCFFSE 246
I + K+ + +A +L +++ G + P SL + DAF FF E
Sbjct: 468 YGSLINCLCKDRKLIDAEIVLADMI--GRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDE 525
Query: 247 M 247
M
Sbjct: 526 M 526
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 27/157 (17%)
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------- 172
D+RT+ IL+N C G++ +A+E L +L + G P S +VN ++G V
Sbjct: 324 DERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTT 383
Query: 173 ---------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
P+ TFN++I C++GE+ A+ ++ VS E + L N
Sbjct: 384 EQMEERGLEPNRITFNTVISKFCETGEVD-HAETWVRRMVEKGVSPTV---ETYNSLING 439
Query: 224 VEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G K G F F F EM PN Y
Sbjct: 440 Y--GQK-----GHFVRCFEFLDEMDKAGIKPNVISYG 469
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 37/179 (20%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+ M +S +T + +I +G+ G E ++ + V+ Y SL C +
Sbjct: 418 VRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCK 477
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------ 152
MI +G P+ + +L+ A CS K+++A F E+ G
Sbjct: 478 DRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVT 537
Query: 153 ----------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNK 201
N V+ A+ + +M +G PD+ T+NSLI KS VNT K
Sbjct: 538 YNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKS--------VNTQK 588
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 38/157 (24%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV 110
T E M+ L T + +I +F + G +D+A
Sbjct: 382 TTEQMEERGLEPNRITFNTVISKFCETGEVDHA----------------------ETWVR 419
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
RM+ KG P T+ L+N + G EFL E+ G P V S ++N
Sbjct: 420 RMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDR 479
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGEL 191
MI +G P+ E +N LIE C +L
Sbjct: 480 KLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKL 516
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------- 152
F M++ VPD+ + ++ ++ G + +A Q++ D+G
Sbjct: 627 FQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLR 686
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
+ V K +V+ M +G VP ++T+N LI+ +C
Sbjct: 687 DRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLC 720
>gi|341605743|gb|AEK82974.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605753|gb|AEK82979.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605831|gb|AEK83018.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 8 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 45
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 46 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 105
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 106 ALDYFQT-----CRFN--GXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 158
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 159 CYNALIDALTKHGKVDEAMTLFKRME 184
>gi|224576651|gb|ACN56999.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ G + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GFAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 154
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 51/188 (27%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+T +++I+ GLID A +F++ MI +G P+ T+
Sbjct: 302 RTYTVLIKALCDRGLIDKAFNLFDE----------------------MIPRGCKPNVHTY 339
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------ 172
T+L++ C GK+ EA +++ P V + ++N K G V
Sbjct: 340 TVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEK 399
Query: 173 ----PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDE 215
P++ TFN L+E +C+ G + GL D+ + + I + +E ++
Sbjct: 400 RACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNT 459
Query: 216 AFRLLCNL 223
A++LL ++
Sbjct: 460 AYKLLSSM 467
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
+M KG P RT+T+L+ A C G + +A E+ +G P V +
Sbjct: 291 QMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDG 350
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A + KM+K P + T+N+LI CK G +
Sbjct: 351 KIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRV 387
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 21/109 (19%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
P+ +++IL++ C G++ EA ++ +KG P R+ A +
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAV 207
++MI +G P++ T+ LI+ +C+ G++ G+C + ++I P+V
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRI-FPSV 371
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 32/191 (16%)
Query: 33 RTLNRLNLTLISELSMWKTIELMK---PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK 89
RT N L L +K + L+K + LS + +++I+ + G ++ A ++ +
Sbjct: 407 RTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSS 466
Query: 90 CTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGK 136
F+ + L + ++ F + M+RKG D+ T T L++ C GK
Sbjct: 467 MNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGK 526
Query: 137 MREAQEFLQELSD-KGFNPP---------------VRSAKQMVNKMIKQGSVPDLETFNS 180
R+A L+ L + P V+ M+ K+ K G VP + T+ +
Sbjct: 527 TRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTT 586
Query: 181 LIETICKSGEL 191
L++ + +SG++
Sbjct: 587 LVDGLIRSGDI 597
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P +L++I++ K + + + K V+ Y +L +R
Sbjct: 546 PHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILE 605
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M G +P+ +TI++N C G++ EA++ L + D G +P + MV + G
Sbjct: 606 LMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNG 665
Query: 171 SVPD-LETFNSLIE 183
+ LET +++E
Sbjct: 666 KLDRALETVRAMVE 679
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 31/160 (19%)
Query: 62 VFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV------- 110
+FP T + +I + K G + A E+ C+ V +N L +C V
Sbjct: 367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV 426
Query: 111 ----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
RM+ G PD ++ +L++ C G M A + L ++ P + ++N
Sbjct: 427 HLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAF 486
Query: 167 IKQGSVP----------------DLETFNSLIETICKSGE 190
KQG D T +LI+ +CK G+
Sbjct: 487 CKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGK 526
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 30/154 (19%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------------- 152
+V + RM GFV + +VNA C +G A+ F+ ++ GF
Sbjct: 180 YVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLG 239
Query: 153 ---NPPVRSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGEL-------------GLCA 195
+R A ++ + M K+ + P+ +++ LI +C+ G L G
Sbjct: 240 FCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQP 299
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
T + I A+ +ID+AF L ++ G K
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCK 333
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 15/141 (10%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------AKQMVNKMIK 168
F P +++I+++A C + EA++ +E+ +G P V S AK++ N+M+
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVN 297
Query: 169 QGSVPDLETFNSLIETICKSGELGLCAD---VNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
QG P++ TFN LI+ +CK G++ D V + +P + + E F L+ +L
Sbjct: 298 QGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL-N 356
Query: 226 DGHKLF---PSLGQFDDAFCF 243
+LF PS G D C+
Sbjct: 357 SARELFVSMPSKGCEPDVICY 377
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 26/195 (13%)
Query: 28 DIYAERTLNRLNLTLISELS-MWKTIELMKPDSLSVFPQ----TLSLIIEEFGKHGLIDN 82
D++ E + + T+IS S MW+ + + + ++ Q T +++I+ K G +
Sbjct: 263 DLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIE 322
Query: 83 AVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVN 129
A ++ +L YNSL FV M KG PD +T+L+N
Sbjct: 323 AKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLIN 382
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+C + K+ EA + + G P V++ ++ + + G V D + +++ G
Sbjct: 383 GYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPG 442
Query: 190 EL--------GLCAD 196
+L GLC +
Sbjct: 443 DLYIYGIFLNGLCKN 457
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
Y+ + + +M G PD T IL+N C+ ++ E + + +G+ P + +
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A + +M K G P+ T+ +L++ +C++G + +
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISI 219
>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Vitis vinifera]
Length = 2037
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P L+I + K G+ID AVE F + V N + V+
Sbjct: 914 PSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFR 973
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
M KG P+ T IL+N C G +++A L+++ + GF P +
Sbjct: 974 EMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKG 1033
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++A ++++ MI +G D+ T+N I+ +C
Sbjct: 1034 RYKAAIELIDYMICKGIEADVCTYNVFIDNLC 1065
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 107/290 (36%), Gaps = 93/290 (32%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----HV-- 107
M+ + +S T + +I F K G I A +VFN+ + F+ + YN+L HV
Sbjct: 1080 MRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGD 1139
Query: 108 -----------------------------------------CFVRMIRKGFVPDKRTHTI 126
RM V +T+
Sbjct: 1140 FEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTV 1199
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQG 170
L++ C +G + EA + + + G NP V +SAK+++ +M + G
Sbjct: 1200 LIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 1259
Query: 171 SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
V + +++LI C+ G + G AD T + + ++ ++ + EA
Sbjct: 1260 LVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAE 1319
Query: 218 RLLCNLVEDGHKLFP-------------SLGQFDDAFCFFSEM-QIKTHP 253
+ LC++ G L P S+G +AF FF +M + HP
Sbjct: 1320 KFLCHMSRIG--LVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHP 1367
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 38/140 (27%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
S +I F +HG + A++V+ NC G D T +L
Sbjct: 1268 STLIYNFCQHGNVTEAMKVY---AVMNCN-------------------GHGADHFTCNVL 1305
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQGS 171
V++ C GK+ EA++FL +S G P + ++N MIK G
Sbjct: 1306 VSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 1365
Query: 172 VPDLETFNSLIETICKSGEL 191
P T+ SL++ +CK G L
Sbjct: 1366 HPSFFTYGSLLKGLCKGGNL 1385
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 45/169 (26%)
Query: 41 TLISELSMWKTI--ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
L+ LS++ T+ E + PD L+ L L K G+ D V++ K
Sbjct: 1560 ALLRYLSLYSTMMREGIFPDKLTFHSLILGL-----SKSGIPDLGVKLLGK--------- 1605
Query: 99 VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
MI +G + D+ T IL+N + SGKMR+A + + ++ G P
Sbjct: 1606 -------------MIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDT 1652
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
R + ++++M++ G +P + +LI +C+ G++
Sbjct: 1653 YNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDI 1701
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 39/173 (22%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C + N + V L++ +M++ +PD T++ L+ C GK A
Sbjct: 1415 CKSGNLHEAVALFD-------KMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMG 1467
Query: 150 KGFNPP-----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL- 191
+G P ++A +M+K+G+ PD FN++I++ + G++
Sbjct: 1468 RGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 1527
Query: 192 ------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
G+C ++ T I + SK+ + L ++ +G +FP
Sbjct: 1528 KANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG--IFP 1578
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 37/159 (23%)
Query: 92 AFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
F+ +Q +L Y SL + M+R+G PDK T L+ SG + D G
Sbjct: 1554 GFSKKQALLRYLSL---YSTMMREGIFPDKLTFHSLILGLSKSG-----------IPDLG 1599
Query: 152 FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVN 198
+++ KMI +G++ D TFN LI +SG+ LG+ D +
Sbjct: 1600 V--------KLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRD 1651
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
T ++K+ E+ +L ++E+G + P Q+
Sbjct: 1652 TYNHIFNGLNKKSAFRESTVVLHEMLENG--VIPKHAQY 1688
>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g12700, mitochondrial-like
[Glycine max]
Length = 555
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 88/277 (31%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVC--- 108
+L++P+ + T S +I+ K LI +A+ +F+ T+ V+ YNSL H C
Sbjct: 189 DLVRPNLI-----TYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSV 243
Query: 109 ---------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---- 155
M+R PD T ILV+A C G++ EAQ + +G P
Sbjct: 244 GQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTY 303
Query: 156 ------------VRSAKQMVNKMIKQGS-------------------------------- 171
V A+++ N+M+K+G
Sbjct: 304 NALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRC 363
Query: 172 ---VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
VP+L T+NSLI+ +CK G + G D+ T I + A K ++
Sbjct: 364 KNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEK 423
Query: 216 AFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQI 249
A L +V+ ++P +D + FC +++I
Sbjct: 424 AISLFRQIVQ---GIWPDFYMYDVIVENFCKGEKLKI 457
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 29/143 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPP 155
+++ GF P+ T L+N +C +G + +A F +L KG+ N
Sbjct: 116 ILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQ 175
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICK----SGELGLCADVNTNKISIPAVSKEF 211
R A Q++ KM + P+L T++++I+ +CK + L L + V + I + V+
Sbjct: 176 TRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNS 235
Query: 212 MID---------EAFRLLCNLVE 225
+I EA RLL +V
Sbjct: 236 LIHGCCSVGQWREATRLLTMMVR 258
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
+ R I +G PD + ++V +C K++ A+E LQ L G P VR+ M+N +
Sbjct: 425 ISLFRQIVQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINAL 484
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
K S F+ + + K + D T + I A+ + D+A +L ++E
Sbjct: 485 CKDCS------FDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIER 538
Query: 227 G 227
G
Sbjct: 539 G 539
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 40/241 (16%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
M ++LM + +S + +++ + K +I+ A+ +FNK V+ + +L
Sbjct: 320 MHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALID 379
Query: 106 HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--- 151
+C F +MI +G P+ + LV C+ GK +A+E E+ D+G
Sbjct: 380 ALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICV 439
Query: 152 ----FNP---------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN 198
FN V A+++++ MI+ G P++ ++N+L+ C +G + A +
Sbjct: 440 DAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLL 499
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258
+S EF R C + DDA+ F EM +K P
Sbjct: 500 DVMVSNGLKPNEFTYTILLRGYCKAR-----------RVDDAYSLFREMLMKGVTPVVAT 548
Query: 259 Y 259
Y
Sbjct: 549 Y 549
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 44/194 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F +MI +G PD T+ L++ + S+GK +E + L+E+S G P
Sbjct: 219 FQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCK 278
Query: 156 ---VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
R A+ + M ++G PD+ + L+ G L G+ +
Sbjct: 279 NGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRI 338
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-------------LGQFDDAFCFFSE 246
I A +K+ MI+EA + + + G L P LG+ DDA F++
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQG--LSPDVVSFGALIDALCKLGRVDDAVLQFNQ 396
Query: 247 MQIKTHPPNRPVYA 260
M + PN V++
Sbjct: 397 MINEGVTPNIFVFS 410
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G P++ T+TIL+ +C + ++ +A +E+ KG P V + +++ + + G
Sbjct: 502 MVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGR 561
Query: 172 VPDL-ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ E + ++I + K D+ T I + + K +DEAF++
Sbjct: 562 FSEANELYLNMINSRTK-------CDIYTYNIILNGLCKNNFVDEAFKMF 604
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 86/210 (40%), Gaps = 45/210 (21%)
Query: 80 IDNAVEVFN-KCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHT 125
+D A ++ + + F C V+ YN++ + F+ M+ +G P+ T+T
Sbjct: 141 VDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYT 200
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
+++ C + + A+ Q++ D+G P + QM+ +M
Sbjct: 201 TVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTH 260
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD T+ L++ +CK+G G+ DV I + + + + E
Sbjct: 261 GLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEM 320
Query: 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
L +V G+ + P+ F+ FC +++
Sbjct: 321 HSFLDLMV--GNGVSPNRRIFNIMFCAYAK 348
>gi|260780558|gb|ACX50825.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 176
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 24 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVV 83
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K IDEA RL
Sbjct: 84 VNGLCKNGRVEEALDYFQT-----CQFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFE 136
Query: 222 NLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+ E G F G+ D+A F M+
Sbjct: 137 EMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRME 174
>gi|255685922|gb|ACU28450.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 163
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 1 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 60
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQ 161
PD + TI + ++C + + A L +S +G V +
Sbjct: 61 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKXEXYE 120
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 121 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 153
>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
Length = 316
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 42/185 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
M R G P+ T+++L+N C SG EA+E + G P + + +++
Sbjct: 1 MSRDGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGN 60
Query: 166 ----------MIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
M++ G PD FN I CK G +LG D+ T
Sbjct: 61 LVDMNNVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTT 120
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIK 250
I + K +D+A C +++DG H F G+++ A F EM +
Sbjct: 121 VIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHG-FSMYGKWEKAEELFYEMMDR 179
Query: 251 THPPN 255
PPN
Sbjct: 180 GIPPN 184
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
M+PD ++ I + K G +D A FNK ++ Y ++ +C
Sbjct: 76 MRPDR-----HVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGR 130
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
F +MI G P+ T T L++ + GK +A+E E+ D+G P V +
Sbjct: 131 LDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNS 190
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKSGELG 192
M++++ K+G V P++ ++N++I +GE+G
Sbjct: 191 MIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVG 237
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 53/243 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +I+ GK G +D A +F K ++Y SL H F +
Sbjct: 194 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKEL 253
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK---- 168
IR+G PD ++ +G++ + + +++ GF P VRS +++ + K
Sbjct: 254 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA 313
Query: 169 ------------QGSVPDLETFNSLIETICKSGELGLCAD-------------VNTNKIS 203
QG D +N++++ CKSG++ + V T
Sbjct: 314 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI 373
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTH 252
+ ++K +DEA+ L G +L F +G+ D+A+ EM K
Sbjct: 374 VDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 433
Query: 253 PPN 255
PN
Sbjct: 434 TPN 436
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRMIR 114
S +I+ FGK G ID A + + V +NSL VCF M
Sbjct: 406 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 465
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK------ 168
P+ T++IL+N C K +A F Q++ +G P V + M++ + K
Sbjct: 466 MKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITD 525
Query: 169 ----------QGSVPDLETFNSLIETI 185
G +PD +FN+LIE +
Sbjct: 526 AYSLFERFKANGGIPDAASFNALIEGM 552
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M ++GF D R + +V+ +C SGK+ +A E L+E+ +K P V + +V+ + K
Sbjct: 320 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 379
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG- 227
+ L+ L E ++ G+ +V I K IDEA+ +L +++ G
Sbjct: 380 ---IDRLDEAYMLFE---EAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 433
Query: 228 -------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ L +L + ++A F M+ PPN Y+
Sbjct: 434 TPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 476
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 44/188 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------MIRKGF 117
+I +G G ++A ++ + C V+ +NS+ C + +++K
Sbjct: 59 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA 118
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET 177
P+ T+ I+++ C G++ EA L E+ P+L T
Sbjct: 119 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASL-------------------FPNLLT 159
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
N +++ +CK+ +L G D T I + K+ +DEA+RL ++
Sbjct: 160 VNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 219
Query: 225 EDGHKLFP 232
+ GH P
Sbjct: 220 DAGHNANP 227
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 96/255 (37%), Gaps = 71/255 (27%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
WK +K L + + +I K G + A E+F + A C YN+
Sbjct: 3 WKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNT---- 58
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
++ + S+G+ +A + L+ L ++G P V S ++
Sbjct: 59 ------------------MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGK 100
Query: 165 -----------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTN 200
+++K+ + P+ T+N +I+ +C G + L ++ T
Sbjct: 101 KRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTV 160
Query: 201 KISIPAVSKEFMIDEAFRLL---------------CNLVED-GHKLFPSLGQFDDAFCFF 244
I + + K ++EA+++ C+L++ G K GQ D+A+ F
Sbjct: 161 NIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKK-----GQVDEAYRLF 215
Query: 245 SEMQIKTHPPNRPVY 259
+M H N VY
Sbjct: 216 EKMLDAGHNANPVVY 230
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
P+ T I+V+ C + K+ EA + + S +G NP + +++ + K+G V +
Sbjct: 155 PNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEA--- 211
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234
L E + +G N N + ++ + F I EDGHK+F L
Sbjct: 212 YRLFEKMLDAGH-------NANPVVYTSLIRNFFIH-------GRKEDGHKIFKEL 253
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
MK ++ + + +++ F K G + A E+ + Q V Y ++
Sbjct: 323 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 382
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
++ F KG + ++ L++ + G++ EA L+E+ KG P V +
Sbjct: 383 LDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 442
Query: 162 MVNKMIKQGSVPD-LETFNSLIETIC 186
+++ ++K + + L F S+ E C
Sbjct: 443 LLDALVKAEEINEALVCFQSMKEMKC 468
>gi|341606825|gb|AEK83515.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 206
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 4 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 41
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 42 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 101
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ GL + I + K IDEA RL + E G
Sbjct: 102 ALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 154
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ ++A F M+
Sbjct: 155 CYNALIDALTKHGKVNEAMTLFKRME 180
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 102/285 (35%), Gaps = 92/285 (32%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------- 111
+ ++++ + + G + +A VF++ Q V+ +N+L +
Sbjct: 243 RQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGL 302
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------- 154
M + G PD T+ + C +G++++A E +E+ ++G NP
Sbjct: 303 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 362
Query: 155 ----------------------------------PVRSAKQMVNKMIKQGSVPDLETFNS 180
+++A +V +M K G PD T+ +
Sbjct: 363 VTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 422
Query: 181 LIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
LI+ CK GEL G+ D T I +SK +A R+LC ++E G
Sbjct: 423 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 482
Query: 228 HKLFPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
L P + DAFC EMQ K P Y
Sbjct: 483 --LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTY 525
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E M+ D L T + +I+ K G +D A+E+ + + + Y +L
Sbjct: 405 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 464
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
M+ G PD T+T++++A+C +G ++ + L+E+ +KG NP +
Sbjct: 465 AGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT 524
Query: 157 --------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++A ++N M+ G P+ T+N L++ CK G++
Sbjct: 525 YNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKV 573
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 32/132 (24%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++ ++ G P+ R +L+ SGK+ SA+ + ++M++
Sbjct: 230 YLHLLDAGVPPEARQFNMLMRDMIRSGKLA-------------------SARNVFDEMLR 270
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G P + TFN+L+ +CK+ +L G+ DV T I + K I +
Sbjct: 271 RGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQD 330
Query: 216 AFRLLCNLVEDG 227
A + + E G
Sbjct: 331 AMEMFEEMCERG 342
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S++I+ F + G +D A+ F++ + V YNSL F+ M
Sbjct: 402 TYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEM 461
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG P T T L++ +C ++++A + ++ D G P V + +++ + +
Sbjct: 462 TNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKM 521
Query: 173 PDL-ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ E F+ L+E K E+ T + I ++ ID+AF LL ++ + G
Sbjct: 522 AEASELFDELVERKIKPTEV-------TYNVLIEGYCRDGKIDKAFELLEDMHQKG 570
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C Q+ LYN +MI G P+ T T L++ CS+ KM EA E EL +
Sbjct: 481 CKDLQVQKAFKLYN-------KMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVE 533
Query: 150 KGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
+ P + A +++ M ++G VPD T+ LI +C +G +
Sbjct: 534 RKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSK 593
Query: 194 CAD---------VNTNKISIPAV----SKEFMIDEAFRLLCNLVEDG 227
D V N++ A+ +E + EA C +++ G
Sbjct: 594 AKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRG 640
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 57/249 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
+S +++ K G ID+A E+ K F + +YN+L + + M
Sbjct: 332 AVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNM 391
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
P+ T++IL++++C SG++ A + + G V + ++N
Sbjct: 392 SLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDL 451
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+M +G P TF SLI CK ++ G+ +V T
Sbjct: 452 SAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTAL 511
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIK 250
I + + EA L LVE K+ P+ G+ D AF +M K
Sbjct: 512 ISGLCSTNKMAEASELFDELVE--RKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQK 569
Query: 251 THPPNRPVY 259
P+ Y
Sbjct: 570 GLVPDTYTY 578
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KG + + TH I++ +C G+ EA + L E+++ G P V +
Sbjct: 778 KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGA 837
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ ++ + M+ +G PDL +N LI C +GEL
Sbjct: 838 SVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGEL 870
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS--- 171
KG D T+ LV +C + + + E+ + GF+P + +V+ + KQG
Sbjct: 289 KGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDD 348
Query: 172 -------------VPDLETFNSLIETICKSGEL 191
VP+L +N+LI ++CK G+L
Sbjct: 349 AYELVVKVGRFGFVPNLFVYNALINSLCKGGDL 381
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 29/196 (14%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAV 84
VR D Y + R L L + I M+ + + T +++I K + AV
Sbjct: 221 VRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAV 280
Query: 85 EVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAW 131
EV V+ Y +L + F R M+ GF P + + LV+
Sbjct: 281 EVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGL 340
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDL 175
GK+ +A E + ++ GF P + ++N + K G + P+
Sbjct: 341 RKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNG 400
Query: 176 ETFNSLIETICKSGEL 191
T++ LI++ C+SG L
Sbjct: 401 ITYSILIDSFCRSGRL 416
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 34/221 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG--FVPD- 120
T +++IE + + G ID A E+ Y L +C + K F+ D
Sbjct: 542 TYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDL 601
Query: 121 --------KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ ++ L++ +C G++ EA E+ +G N + +++ +KQ
Sbjct: 602 HKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQ--- 658
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
PD +TF L++ + + GL D I SKE +AF +V + + FP
Sbjct: 659 PDRKTFFDLLKDM---HDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTE--ECFP 713
Query: 233 SL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
++ G+ D A F MQ PPN Y
Sbjct: 714 NVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYG 754
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 43/190 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI++G D H +L++ + + L+++ D+G P M++ K+GS
Sbjct: 636 MIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGS 695
Query: 172 ----------------VPDLETFNSLIETICKSGEL---GL------CADVNTNKIS--- 203
P++ T+ +L+ +CK+GE+ GL A+V N I+
Sbjct: 696 FKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGC 755
Query: 204 -IPAVSKEFMIDEAF--------RLLCNLVEDGHKL----FPSLGQFDDAFCFFSEMQIK 250
+ ++KE + EA LL N V H + F LG+F +A SEM
Sbjct: 756 FLDNLTKEGNMKEAIGLHHAMLKGLLANTVT--HNIIIRGFCKLGRFHEATKVLSEMTEN 813
Query: 251 THPPNRPVYA 260
P+ Y+
Sbjct: 814 GIFPDCVTYS 823
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 102/268 (38%), Gaps = 72/268 (26%)
Query: 63 FPQTLSLI-----IEEFG--------------KHGLIDNAVEVFNKCTAFNCQQCVLLYN 103
FPQTL+ +EEFG K GL AV FN+ + C+ + ++
Sbjct: 126 FPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFS 185
Query: 104 SL------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
+ F ++ F PD +T LV+ WC +G + EA+ E+ G
Sbjct: 186 VVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAG 245
Query: 152 FNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG------ 189
P V + A + ++MI G P+ TFN+L+ K+G
Sbjct: 246 IQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVL 305
Query: 190 -------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS--------- 233
LG D T I + ++ ++EA ++L N V+ G L S
Sbjct: 306 QVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKIL-NSVKKGCNLNASSFNPIFGCI 364
Query: 234 --LGQFDDAFCFFSEMQIKTHPPNRPVY 259
LG + A F++M+ PN Y
Sbjct: 365 SKLGDVNSAHRMFAKMKDLKCRPNTVTY 392
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 30/192 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+I+E + G + + ++K F C + + F M G PD T+TIL++
Sbjct: 275 LIKEMMRKGFVPD-TSTYSKVITFLCHATKV--EKAFLLFQEMKMVGVTPDVYTYTILID 331
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------AKQ------MVNKMIKQGSVP 173
++C +G + +AQ +E+ G +P V + AKQ + ++M+ G P
Sbjct: 332 SFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP 391
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
+ T+ +L++ +CK+G + +V I + D F C ED H L P+
Sbjct: 392 NDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA-----DSDFYFPC---EDRHTLAPN 443
Query: 234 L---GQFDDAFC 242
+ G D C
Sbjct: 444 VVTYGALVDGLC 455
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 49/226 (21%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K + LM+ S T + +I+ GK G ID ++++F +
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ-------------------- 609
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD--------------KGFNPP 155
M RKG P+ T+ +L+N C++G + +A+ L E+ +GF+
Sbjct: 610 --MSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 667
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK--EFMI 213
++ ++ +M G+VP + LI+ K+G L + +++ + +P+ K M
Sbjct: 668 FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMY 727
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ LC Q ++AF +SEM + P V+
Sbjct: 728 ASLIQALC-----------LASQVEEAFRLYSEMTRRGFVPELSVF 762
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 35/168 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G P+ + L++ +C +GK+ AQE +++ G+ P V + ++++M K G
Sbjct: 470 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGR 529
Query: 172 V----------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
+ P++ T+ ++I+ +C+ GE L L + + S V+
Sbjct: 530 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 589
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ID G+ D + F++M K PN Y
Sbjct: 590 LIDG---------------LGKAGKIDLSLDLFTQMSRKGCSPNYVTY 622
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ F K G ID+A EVF + T V Y SL +M++
Sbjct: 485 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 544
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------ 164
P+ T+T +++ C G+ +A + L + +KG +P V + +++
Sbjct: 545 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604
Query: 165 ----KMIKQGSVPDLETFNSLIETICKSGEL 191
+M ++G P+ T+ LI +C +G L
Sbjct: 605 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 635
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 43/179 (24%)
Query: 41 TLISELSMWKTI-------ELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCT 91
T++S L K + E MK D FP T +++I G+ G + AVEVF +
Sbjct: 481 TVLSTLGKLKQVSHLHDLYEKMKQDG--PFPDIFTYNILISSLGRVGKVKEAVEVFEELE 538
Query: 92 AFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
+ +C+ ++ YNSL H+ F+ M KG PD T++ L+ + + K
Sbjct: 539 SSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDK-- 596
Query: 139 EAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
V A+ + ++MI QG P++ T+N L++ + ++G D+
Sbjct: 597 -----------------VEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDL 638
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-------------LHVCFVRMIRKG 116
++E + G A+E+ +K ++YN+ LH + +M + G
Sbjct: 447 MLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDG 506
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
PD T+ IL+++ GK++EA E +EL P + S ++N + K G V
Sbjct: 507 PFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAH 566
Query: 173 ------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
PD+ T+++LIE K+ ++ G C ++ T I + +
Sbjct: 567 MRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCL 626
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
+ E L L E G
Sbjct: 627 ERAGRTAETVDLYAKLREQG 646
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 41/108 (37%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
PD+ T+TI++ +GKM A+E L + +M+ +G P+L +
Sbjct: 302 PDEYTYTIMIRM---TGKMGRAEESL----------------ALFEEMLTKGCTPNLIAY 342
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
N++I+ + KSG M+D+A L CN++++
Sbjct: 343 NTMIQALSKSG----------------------MVDKAILLFCNMIKN 368
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNS--LHVCFVRMIRKGFVP 119
L++++ E G+ G +D +EV NK A+ + L +S H F M
Sbjct: 381 LNVLVAE-GQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGG 439
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----------------PPVRSAKQMV 163
D+ + ++ + C GK EA E L ++ +KG + V +
Sbjct: 440 DRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLY 499
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
KM + G PD+ T+N LI ++ + G++ +V
Sbjct: 500 EKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEV 533
>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g77360, mitochondrial; Flags: Precursor
gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW I M+ + + +T +++ ++ + +D A+ FN ++ ++ +N L
Sbjct: 153 MWDLINAMRKKKM-LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLS 211
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C + +RK F PD +T++IL+ W + +A+E +E+ D G +P
Sbjct: 212 ALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPD 271
Query: 156 VRSAKQMVNKMIKQGSVPD-LETFNSLIETICK 187
+ + MV+ + K G V + L S+ +ICK
Sbjct: 272 IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 304
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 41/203 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------------CFVRM 112
T S++++ K G +D A+ + C+ +Y+ L H F+ M
Sbjct: 274 TYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM 333
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G D L+ A+C + +M+ L+E+ KG P +S ++ +I++G
Sbjct: 334 ERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEK 393
Query: 173 ---------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
PD +T+ +I+ C+ E+ G+ ++T + I
Sbjct: 394 DEAFDVFRKMIKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLI 453
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG 227
+ +E +A LL ++E G
Sbjct: 454 NGLCEERTTQKACVLLEEMIEMG 476
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 101/265 (38%), Gaps = 55/265 (20%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ + LMK + P+ S ++ + + G + +A++V + +L+ N+ F
Sbjct: 228 RVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVF 287
Query: 110 VRMIR-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP- 155
VR R G VP+ T+ ++ +C ++ EA E L+++ KG P
Sbjct: 288 VRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDK 347
Query: 156 ---------------VRSAKQMVNKMIKQ-GSVPDLETFNSLIETICK------------ 187
+ + ++ KM K+ G VPD T+N+LI + K
Sbjct: 348 VSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLK 407
Query: 188 -SGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH------------KLFPSL 234
+ E G D + A+ KE + EA L+ ++ GH F L
Sbjct: 408 DAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRL 467
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ D A M H PN Y
Sbjct: 468 GEVDKAKKLLQVMHTHGHKPNTVSY 492
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 17/93 (18%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------VR 157
KGF DK ++ +V+A C G+M EA++ + E+ KG PP V
Sbjct: 412 KGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVD 471
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
AK+++ M G P+ ++ +L+ +C++G+
Sbjct: 472 KAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGK 504
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL------- 175
T+T LV+ G++ EA E ++++ KG +P + + ++++ + G V DL
Sbjct: 631 TYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKM 690
Query: 176 -------ETFNSLIETICKSGEL 191
+N +IE +C G+L
Sbjct: 691 ISRQKCRTIYNQVIEKLCVLGKL 713
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNK-CTAFNCQQCVLLYNSLHVCFVR-------------MI 113
S I+ K G + A ++ N+ + +C V+ Y ++ F R M
Sbjct: 422 SAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMH 481
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVR 157
G P+ ++T L+N C +GK EA+E + + ++P +
Sbjct: 482 THGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLS 541
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
A +V +M+ +G P N L++++C+ G
Sbjct: 542 EACDVVREMVLKGFFPGPVEINLLLQSLCRDG 573
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPP 155
M+ KGF P +L+ + C G+ EA++F++E +KG N
Sbjct: 550 MVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDE 609
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
+ +A +++ M D+ T+ +L++T+ K G +
Sbjct: 610 LDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIA 646
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 77/199 (38%), Gaps = 51/199 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +++ GK G I A E+ K M+ KG P T+
Sbjct: 631 TYTTLVDTLGKKGRIAEATELMKK----------------------MLHKGIDPTPVTYR 668
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKG-----FNPPV---------RSAKQMVNKMIKQGS 171
+++ +C GK+ + L+++ + +N + A ++ K+++ S
Sbjct: 669 TVIHRYCQMGKVDDLVAILEKMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTAS 728
Query: 172 VPDLETFNSLIETICKSG-------------ELGLCADVNT-NKISIPAVSKEFMIDEAF 217
D +T +L+E K G L DV K+S V K +DEA
Sbjct: 729 RSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKG-KVDEAD 787
Query: 218 RLLCNLVEDGHKLFPSLGQ 236
+L+ LVE GH SL Q
Sbjct: 788 KLMLRLVERGHISPQSLKQ 806
>gi|255551261|ref|XP_002516677.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544172|gb|EEF45696.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
P L+V + ++I++ + G ++A++VF K + C VL YN+L +C
Sbjct: 355 PRYLAVNLGSFNVIVDGYCAQGRFEDAIDVFRKMGDYRCSPDVLSYNNLIDQLCKNGMLV 414
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
+ M KG PD+ T+ +L++ ++ + + +++ D G P + ++V
Sbjct: 415 EAEDLYGEMDGKGVKPDEYTYGLLMDTCLEKDRVDDGAGYFRKMVDTGLRPNLAVYNRLV 474
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
+K++K + + ++F L+ K D + K + A++ +DE +++ +
Sbjct: 475 DKLVKLKKIDEAKSFYYLMVKKLK-------MDNASYKFMMEALADNDQMDELIKMVDGM 527
Query: 224 VED 226
++D
Sbjct: 528 LDD 530
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S II+ + G ID A+ +F + + V+ YNSL + M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ + VP+ T +L++ + GK++EA E +E+ +G +P +
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
A M++ M++ PD+ TF SLI+ C
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F + ++G V + T++ILV +C SGK++ A+E QE+ G P V + +++ +
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450
Query: 169 QGSV-------PDLE---------TFNSLIETICKSGEL-------------GLCADVNT 199
G + DL+ + ++IE +CK G++ G+ +V T
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I + K+ + EA LL + EDG+
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGN 539
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 40/180 (22%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G + T I++N +C K A L ++ G+ P V A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC-------------ADVNTNKISIPA 206
+V++M++ G PD+ T+NS++ IC+SG+ L ADV T I +
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 207 VSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
+ ++ ID A L + G K + SL G+++D +M + PN
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 35/169 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ G PD T+ +VN C SG A + L+++ ++ V + +++ + + G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242
Query: 171 SV----------------PDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKE 210
+ + T+NSL+ +CK+G+ L D+ + +I ++
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++D +F G+ +A + EM + PN Y
Sbjct: 303 VLLD---------------VFVKEGKLQEANELYKEMITRGISPNIITY 336
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 45/206 (21%)
Query: 23 NIVRHDIYAERTLN-------RLNLTLISELSMWKTIEL-MKPDSLSVFPQTLSLIIEEF 74
N + H+IY TLN R T + + K ++L +PD+ T + +I+
Sbjct: 117 NGIAHNIY---TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT-----TTFNTLIKGL 168
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDK 121
G + AV + ++ CQ V+ YNS+ +C +M + D
Sbjct: 169 FLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV 228
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS---------- 171
T++ ++++ C G + A +E+ KG V + +V + K G
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 172 ------VPDLETFNSLIETICKSGEL 191
VP++ TFN L++ K G+L
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKL 314
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 37/184 (20%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+AN V + I + + L EL + PD + T ++++ +G +
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM-----TYGILLDGLCDNGKL 454
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTIL 127
+ A+E+F +++Y ++ +C F + KG P+ T+T++
Sbjct: 455 EKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 514
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++ C G + EA L+ KM + G+ P+ T+N+LI +
Sbjct: 515 ISGLCKKGSLSEANILLR-------------------KMEEDGNAPNDCTYNTLIRAHLR 555
Query: 188 SGEL 191
G+L
Sbjct: 556 DGDL 559
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 40/192 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F MI G P+ ++ L+N C GK+REA E+ +G V
Sbjct: 102 FREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCR 161
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ A + ++M+ +G +PD+ TF +LI+ + K G++ G ++ T
Sbjct: 162 FGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVT 221
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQ 248
+ + +D A RL +VE G K+ + + G+ ++A F +MQ
Sbjct: 222 YNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQ 281
Query: 249 IKTHPPNRPVYA 260
+ P+ Y
Sbjct: 282 YEELTPSITTYT 293
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I+ K G + A ++F ++ YNSL +C F M
Sbjct: 186 TFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVM 245
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ +G D ++ L+N +C+SGK EA +++ + P +
Sbjct: 246 VERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRI 305
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
R+AK++ N M G P L+T+ L++ +CK+G + DV
Sbjct: 306 RTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDV 346
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 38/153 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M+ + L+ T +++++ ++G I A E+FN N Q C
Sbjct: 280 MQYEELTPSITTYTILLKALYQNGRIRTAKELFN-----NMQIC---------------- 318
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------S 158
G P T+T+L++ C +G + EA + + L + P +R S
Sbjct: 319 -GQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWES 377
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ +++ G VP++ T+N +I +CK G+L
Sbjct: 378 AMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKL 410
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN-------------SLHVCFVRM 112
T +++++ K+G I+ A++VF + + + +Y+ S F +
Sbjct: 326 TYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEI 385
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
G VP+ T+ I++N C GK+ EA+ ++ + G
Sbjct: 386 PTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESG 424
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 29/146 (19%)
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
++ G+ P+ T + LV C GK+ +A E +++ GF +
Sbjct: 1 MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
R A ++ +M+ + + T+ +I+++CK G +G+C +V
Sbjct: 61 RRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSL 120
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK 229
I + + + EA L +V G K
Sbjct: 121 INGLCRVGKLREAVNLFDEMVSQGIK 146
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 42/222 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+ ++LM +S + +T + +I F + + A+ + +K V+ YNSL
Sbjct: 165 EILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQ 224
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-- 154
+ M G VPD+ T+++ ++ C G++ EA L +KG
Sbjct: 225 CKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANE 284
Query: 155 --------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------- 191
+ A ++++M+ + +P+ T+N+LI+ +CK ++
Sbjct: 285 VIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMES 344
Query: 192 ----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
GL V T I I A+ KE D A R+L +V G++
Sbjct: 345 MIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQ 386
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 90/235 (38%), Gaps = 53/235 (22%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCF------------VRMIRKGFVPDKRTH 124
G +D + +F K +C V Y + H F M +G P+ T+
Sbjct: 53 GRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTY 112
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------ 172
T+++NA C K+ E + L E+ +KG P V + +++ K+G V
Sbjct: 113 TVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHS 172
Query: 173 ----PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDE 215
P+ T+N LI C+ E L V T I K +D
Sbjct: 173 NSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDS 232
Query: 216 AFRLLCNLVEDG-------HKLFPSL----GQFDDAFCFFSEMQIKTHPPNRPVY 259
A+RLL + E+G + +F G+ ++A F+ ++ K N +Y
Sbjct: 233 AYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIY 287
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116
PD+L T +L+I+ +G GL++ A +V + C Y+ C ++ + K
Sbjct: 422 PDAL-----TYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYS----CLIKHLLKE 472
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
+ K + L ++ F +++D +A ++ KM++ G P++
Sbjct: 473 ELTKKYKNVALCDSI--------PNVFFADVADVWKMMKFETALELFEKMLEHGCSPNIN 524
Query: 177 TFNSLIETICKSGELGLCADV----NTNKISIPAVSKEFMID---------EAFRLLCNL 223
T+ LI +CK G LG+ + N +S +++ +A RL+ +
Sbjct: 525 TYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAM 584
Query: 224 VEDGHKLFPSLGQFDDAFCFFSE 246
+E GH P L + FC E
Sbjct: 585 MEHGH--LPLLESLNVLFCGLYE 605
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 32/153 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------MIRKG 116
+I+ + K G +D+A + ++ +C YN+L +C R MI+KG
Sbjct: 290 LIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKG 349
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
T+TIL+ A G A L ++ G+ P V + A+
Sbjct: 350 LKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAE 409
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
M++ M ++G +PD T+ +I+ G LGL
Sbjct: 410 DMMSMMFERGVMPDALTYTLVIDAY---GGLGL 439
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 34/192 (17%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
++ H +M+ G+ PD +T ++A+C+ G ++EA++ + + ++G P
Sbjct: 370 FDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTL 429
Query: 156 ----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKS------GELGLCADV-N 198
+ A ++ +M G P T++ LI+ + K + LC + N
Sbjct: 430 VIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPN 489
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEM 247
+ V K + A L ++E G KL L G+ A F M
Sbjct: 490 VFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHM 549
Query: 248 QIKTHPPNRPVY 259
+ P+ +Y
Sbjct: 550 NERGVSPSEAIY 561
>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
Length = 1356
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P L+I + K G+ID AVE F + V N + V+
Sbjct: 163 PSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFR 222
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
M KG P+ T IL+N C G +++A L+++ + GF P +
Sbjct: 223 EMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKG 282
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++A ++++ MI +G D+ T+N I+ +C
Sbjct: 283 RYKAAIELIDYMICKGIEADVCTYNVFIDNLC 314
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 106/288 (36%), Gaps = 89/288 (30%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----HV-- 107
M+ + +S T + +I F K G I A +VFN+ + F+ + YN+L HV
Sbjct: 329 MRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGD 388
Query: 108 -----------------------------------------CFVRMIRKGFVPDKRTHTI 126
RM V +T+
Sbjct: 389 FEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTV 448
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQG 170
L++ C +G + EA + + + G NP V +SAK+++ +M + G
Sbjct: 449 LIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 508
Query: 171 SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
V + +++LI C+ G + G AD T + + ++ ++ + EA
Sbjct: 509 LVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAE 568
Query: 218 RLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEM-QIKTHP 253
+ LC++ G + S+G +AF FF +M + HP
Sbjct: 569 KFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHP 616
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 38/140 (27%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
S +I F +HG + A++V+ NC G D T +L
Sbjct: 517 STLIYNFCQHGNVTEAMKVY---AVMNCN-------------------GHGADHFTCNVL 554
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQGS 171
V++ C GK+ EA++FL +S G P + ++N MIK G
Sbjct: 555 VSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQ 614
Query: 172 VPDLETFNSLIETICKSGEL 191
P T+ SL++ +CK G L
Sbjct: 615 HPSFFTYGSLLKGLCKGGNL 634
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 45/169 (26%)
Query: 41 TLISELSMWKTI--ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
L+ LS++ T+ E + PD L+ L L K G+ D V++ K
Sbjct: 809 ALLRYLSLYSTMMREGIFPDKLTFHSLILGL-----SKSGIPDLGVKLLGK--------- 854
Query: 99 VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
MI +G + D+ T IL+N + SGKMR+A + + ++ G P
Sbjct: 855 -------------MIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDT 901
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
R + ++++M++ G +P + +LI +C+ G++
Sbjct: 902 YNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDI 950
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 39/173 (22%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C + N + V L++ +M++ +PD T++ L+ C GK A
Sbjct: 664 CKSGNLHEAVALFD-------KMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMG 716
Query: 150 KGFNPP-----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL- 191
+G P ++A +M+K+G+ PD FN++I++ + G++
Sbjct: 717 RGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 776
Query: 192 ------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
G+C ++ T I + SK+ + L ++ +G +FP
Sbjct: 777 KANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG--IFP 827
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 37/159 (23%)
Query: 92 AFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
F+ +Q +L Y SL + M+R+G PDK T L+ SG + D G
Sbjct: 803 GFSKKQALLRYLSL---YSTMMREGIFPDKLTFHSLILGLSKSG-----------IPDLG 848
Query: 152 FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVN 198
+++ KMI +G++ D TFN LI +SG+ LG+ D +
Sbjct: 849 V--------KLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRD 900
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF 237
T ++K+ E+ +L ++E+G + P Q+
Sbjct: 901 TYNHIFNGLNKKSAFRESTVVLHEMLENG--VIPKHAQY 937
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 30/149 (20%)
Query: 109 FVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------- 158
F+++I+ + P+ T+T+++ +C GK+ A+ L + ++G P +
Sbjct: 313 FLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHC 372
Query: 159 -------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVN 198
A +++NKM ++G P++ T+N+LI+ +CK G++ GL D
Sbjct: 373 KEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKV 432
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
T + I K+ I A L + E+G
Sbjct: 433 TYTVMITEHCKQGHITYALDLFNRMAENG 461
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F RM+ G P+ +T ++ C +++A L+E+ KG P V + ++N
Sbjct: 243 FRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCK 302
Query: 165 ------------KMIKQGSV-PDLETFNSLIETICKSGEL-------------GLCADVN 198
K+IK S P++ T+ +I CK G+L GL + N
Sbjct: 303 IGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTN 362
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
T I KE + AF L+ + +G + P++ ++ D C ++Q
Sbjct: 363 TYTTLISGHCKEGSFNCAFELMNKMRREGFQ--PNIYTYNALIDGLCKKGKIQ 413
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 29/143 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPP 155
+ R G +PD R+ L+ C G+M E L + +GF
Sbjct: 176 VTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGR 235
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
R ++ +M++ G+ P++ + + I+ +CK + GL +V T+
Sbjct: 236 FRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTS 295
Query: 203 SIPAVSKEFMIDEAFRLLCNLVE 225
I + K + AFRL L++
Sbjct: 296 LINGLCKIGWTERAFRLFLKLIK 318
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 32/185 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K + + L + T +++I E K G I A+++FN
Sbjct: 416 YKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFN-------------------- 455
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
RM G PD T+T L+ +C +M E+Q+ + P ++ M+ K
Sbjct: 456 --RMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCK 513
Query: 169 QG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G S L F +++ C+ AD T I + KE ++EA L +++
Sbjct: 514 VGKSTSALRVFERMVQNGCQ-------ADSITYGALISGLCKESRLEEARALYEGMLDK- 565
Query: 228 HKLFP 232
+L P
Sbjct: 566 -RLVP 569
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 96/246 (39%), Gaps = 62/246 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
M+ S+ S++I+ K G +D+A+ +FN+ + V+ Y+S+ +C
Sbjct: 235 MEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGR 294
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
MI + +P+ T + L++ + GK+ EA+E E+ +G P
Sbjct: 295 WDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSS 354
Query: 156 ----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
+ A QM++ M+ +G P++ T++ LI + CK+
Sbjct: 355 LIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKR--------------- 399
Query: 206 AVSKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPP 254
+D RL C + G + F G+ + A F EM + PP
Sbjct: 400 -------VDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPP 452
Query: 255 NRPVYA 260
+ Y
Sbjct: 453 SVVTYG 458
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
R ++ GF P+ T + L+N +C G++ EA + + + + P V + ++N
Sbjct: 129 RALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKG 188
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGELGLCADV----NTNKISIPAVSKE 210
+M+K G + T+ ++ +CKSG L D+ I V
Sbjct: 189 RVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYS 248
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID +L +DG+ DDA F+EM++K + Y+
Sbjct: 249 IVID-------SLCKDGN--------LDDALSLFNEMEMKGIKADVVAYS 283
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 47/215 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+ PD++ T S +I+ F K + A ++ + + C+ ++ Y+ L + + R
Sbjct: 345 IAPDTI-----TYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKR 399
Query: 115 -------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
KG V D T+ LV +C SGK+ A+E QE+ +G P V
Sbjct: 400 VDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGI 459
Query: 157 -----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
+ A ++ KM K + + +N +I +C + ++ G
Sbjct: 460 LLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKG 519
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ DV T + I + K+ + EA L + EDG
Sbjct: 520 VKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDG 554
>gi|255685910|gb|ACU28444.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685926|gb|ACU28452.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 172
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 29/153 (18%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 10 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 69
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQ 161
PD + TI + ++C + + A L +S +G V +
Sbjct: 70 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKXEXYE 129
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
+ KM+ G L TFN L+ +CK G++ C
Sbjct: 130 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 162
>gi|255685888|gb|ACU28433.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685890|gb|ACU28434.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685892|gb|ACU28435.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 172
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 9 VMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRG 68
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
P + TI + ++C + + A L +S +G V + A
Sbjct: 69 ITPXVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEAY 128
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
++ KM+ G L TFN L+ +CK G++ C
Sbjct: 129 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 162
>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 628
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 42/219 (19%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112
ELMK + +T++ +++ G+ L A +F+K
Sbjct: 262 ELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDK----------------------- 298
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++ F P+ T+T+L+N WC + EA ++ D+G P + + M+ +++
Sbjct: 299 LKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKK 358
Query: 173 PD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-- 229
D ++ F+ + KS G C +V + I I K+ ++ A ++V+ G +
Sbjct: 359 SDAIKLFH-----VMKSK--GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 411
Query: 230 ---------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F + + D + EMQ K HPP+ Y
Sbjct: 412 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTY 450
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 51/194 (26%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
++ +++I +F K ++ A+E F+ M+ G PD +
Sbjct: 378 RSYTIMIRDFCKQSSMETAIEYFDD----------------------MVDSGLQPDAAVY 415
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIK 168
T L+ + + K+ E L+E+ +KG P ++ A ++ NKMI+
Sbjct: 416 TCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQ 475
Query: 169 QGSVPDLETFNSLIET--ICKSGEL-----------GLCADVNTNKISIPAVSKEFMIDE 215
P + TFN ++++ + ++ E+ G+C D N+ + I + E E
Sbjct: 476 NEIEPSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSRE 535
Query: 216 AFRLLCNLVEDGHK 229
A R L +++ G K
Sbjct: 536 ACRYLEEMLDKGMK 549
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------R 111
+T + +I+ + ++A ++NK + + +N + +
Sbjct: 448 KTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGSAVWDE 507
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
MI+KG PD ++T+L+ GK REA +L+E+ DKG P+
Sbjct: 508 MIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPL 552
>gi|255685924|gb|ACU28451.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 162
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFV 118
+ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 1 KNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGIT 60
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
PD + TI + ++C + + A L +S +G V + ++
Sbjct: 61 PDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKVEGYEL 120
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLC 194
KM+ G L TFN L+ +CK G++ C
Sbjct: 121 FGKMLASGVSLCLSTFNKLLHVLCKKGDVKEC 152
>gi|399107200|gb|AFP20364.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFN--GXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ D+A F M+
Sbjct: 161 CYNALIDALTKHGKVDEAMTLFKRME 186
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S II+ + G ID A+ +F + + ++ YNSL +C M
Sbjct: 207 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDM 266
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +P+ T +L++ + GK++EA E +E+ KG +P +
Sbjct: 267 TSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRL 326
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A M++ M++ PD+ TF SLI+ CK
Sbjct: 327 SEANNMLDLMVRNNCSPDIVTFTSLIKGYCK 357
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+ + K GL+ N V F CQ L F M+ G +PD T+ IL++
Sbjct: 367 LFRKISKRGLVANTVTYSILVQGF-CQSGKL--EIAEELFQEMVSLGVLPDVMTYGILLD 423
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
C +GK+ +A E ++L N + ++ M K G V D +N CK
Sbjct: 424 GLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVED--AWNLFCSLPCK-- 479
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
G+ +V T + I + K+ + EA LL + EDG++
Sbjct: 480 --GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNE 517
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 35/173 (20%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
V RM+ G P+ T+ +VN C SG A + L+++ ++ V + +++ +
Sbjct: 156 VLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSL 215
Query: 167 IKQGSV----------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPA 206
+ G + L T+NSL+ +CK+G+ + L D+ + KI
Sbjct: 216 CRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNV 275
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ +ID +F G+ +A + EM K PN Y
Sbjct: 276 ITFNVLID---------------VFVKEGKLQEANELYKEMITKGISPNTITY 313
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 43/169 (25%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++++ G+ PD T L+N C K+ EA +V +M++ G
Sbjct: 125 KVMKLGYEPDTTTFNTLINGLCLESKVSEAV-------------------VLVARMVENG 165
Query: 171 SVPDLETFNSLIETICKSGELGLC-------------ADVNTNKISIPAVSKEFMIDEAF 217
P++ T+NS++ ICKSG+ L ADV T I ++ ++ ID A
Sbjct: 166 CQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAI 225
Query: 218 RLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
L + G K + SL G+++D +M + PN
Sbjct: 226 SLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPN 274
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 42/185 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T S++++ F + G ++ A E+F + + V+ Y L +C F +
Sbjct: 382 TYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 441
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ D +TI++ C GK+ +A L KG P V + M++ + K+GS+
Sbjct: 442 QKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 501
Query: 173 ----------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
P+ T+N+LI + G+L G AD ++ K+
Sbjct: 502 SEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMV 561
Query: 204 IPAVS 208
I +S
Sbjct: 562 IDMLS 566
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 55/252 (21%)
Query: 59 SLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR-- 114
+S+ P L+ L+I+ K GL+D+A++VF T C+ V Y +L + R
Sbjct: 192 GVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRID 251
Query: 115 -----------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------- 154
G P T +L+N C G + A + + + KG P
Sbjct: 252 EAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLI 311
Query: 155 -------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLC 194
+ A ++++M+ VP++ T+ ++I + K G E G C
Sbjct: 312 HGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYC 371
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCF 243
+ I + KE EA L + G++L + G+ DDA
Sbjct: 372 VNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEV 431
Query: 244 FSEMQIKTHPPN 255
SEM K PN
Sbjct: 432 LSEMTNKGCTPN 443
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 31/161 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIR 114
S +I+ + G D+AVEV ++ T C +SL F M +
Sbjct: 413 SAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAK 472
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
F ++ +++L++ C GK++EA ++ KG P V
Sbjct: 473 HNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVED 532
Query: 159 AKQMVNKMIKQG--SVPDLETFNSLIETICKSGELGLCADV 197
A Q+ N+M+ QG S PD+ T+N L+ T+CK + D+
Sbjct: 533 AMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDL 573
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 30/238 (12%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T S++I+ + G++D A+ +FN+ + V+ Y ++
Sbjct: 380 VDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTV 439
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G PDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 440 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGM 499
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+ ++N + K G + D + L + G D + +
Sbjct: 500 RLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNV------GQHPDAVVYSMLMDGYCLVGK 553
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+++A R+ +V G + + +G+ D+ F EM K P+ +Y
Sbjct: 554 MEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 611
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R +PD T +L+ + C GK++EA++ ++ KG NP V S K M+N
Sbjct: 316 FKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYAT 375
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G + D+ L+ G+ G+ D+ T + I A + M+D+A + + + G
Sbjct: 376 KGCLVDMTDLFDLM-----LGD-GIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGV 429
Query: 229 K-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K +G+ DDA F++M + P++ Y
Sbjct: 430 KPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 471
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 54/238 (22%)
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDK 121
GK G D+ + + + A C V+ Y ++ CF + M+++G PD
Sbjct: 200 GKSGQADDLLRMMAEGGAV-CSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDL 258
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNK 165
T++ +V+A C + M +A+ FL+++ +KG P + A ++ +
Sbjct: 259 VTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 318
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
M + +PD+ T N L+ ++CK G++ G DV + KI + + +
Sbjct: 319 MRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGC 378
Query: 213 IDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + L ++ DG K + + G D A F+EM+ P+ Y
Sbjct: 379 LVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 436
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------- 152
+L + R G VPD +++IL+ + C GK +A + L+ +++ G
Sbjct: 169 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTT 228
Query: 153 -------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
V A + +M+++G PDL T++S++ +CK+ +G
Sbjct: 229 VIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMG 275
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 46/240 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
+E M LS +T + +++ F + G ++ A+ + + A C + N L + +
Sbjct: 234 MEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCK 293
Query: 112 -------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
M +GF PD+ T LVN C G ++ A E L + +GF+P
Sbjct: 294 EGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFT 353
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG---ELGLCADVNT 199
V A +++N+MI + P+ T+N+LI T+CK E A V T
Sbjct: 354 YNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLT 413
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+K +P V + + LC + + H+L A F EM+ K P+ Y
Sbjct: 414 SKGILPDVCT---FNSLIQGLC--LTNNHRL---------AMELFEEMKTKGCHPDEFTY 459
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 62/234 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I+ G ++ A+ + + + C + V+ YN+L
Sbjct: 458 TYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL-------------------- 497
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVNKMIKQ 169
++ +C + ++ EA+E E+ +G N V A Q++++M+ +
Sbjct: 498 --IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLME 555
Query: 170 GSVPDLETFNSLIETICKSGELGLCADVNTNKIS-------------IPAVSKEFMIDEA 216
G PD T+NSL+ C++G++ AD+ S I +SK ++ A
Sbjct: 556 GLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELA 615
Query: 217 FRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
RLL + G L P + +A F EM K PP+ Y
Sbjct: 616 SRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTY 669
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 22/198 (11%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA-FNCQQCVLLYNSL 105
SM + ++ MK + T ++IE + K L D AV V + F + YN L
Sbjct: 123 SMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFL 182
Query: 106 HVCFV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
V RM+ +G PD T IL+ A C + ++R A ++E+ G
Sbjct: 183 LNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGL 242
Query: 153 NPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
+P ++ ++ I++G++ L ++ C S ++V N + + KE
Sbjct: 243 SPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPS------SNVTVN-VLVHGYCKEG 295
Query: 212 MIDEAFRLLCNLVEDGHK 229
I+E + + +G +
Sbjct: 296 RIEEVLSFIDEMSNEGFR 313
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 39/202 (19%)
Query: 19 NHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG 78
N N++ H E + + L+ I E+S E +PD T + ++ + G
Sbjct: 281 NVTVNVLVHGYCKEGRIEEV-LSFIDEMSN----EGFRPDRF-----TFNSLVNGLCRIG 330
Query: 79 LIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMIRKGFVPDKRTHT 125
+ +A+E+ + + YNSL +C + +MI + F P+ T+
Sbjct: 331 HVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYN 390
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQ 169
L++ C ++ EA E + L+ KG P V R A ++ +M +
Sbjct: 391 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTK 450
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G PD T+N LI+++C G L
Sbjct: 451 GCHPDEFTYNMLIDSLCSRGRL 472
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I K ++ A E+ T+ V +NSL +C F M
Sbjct: 388 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEM 447
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
KG PD+ T+ +L+++ CS G++ EA L+E+ G N +
Sbjct: 448 KTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRI 507
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A+++ ++M QG ++ T+N+LI+ +CK+
Sbjct: 508 EEAEEIFDEMELQGISRNVVTYNTLIDGLCKN 539
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 71/226 (31%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVR-----------M 112
T + +I+ F K+ I+ A E+F++ + V+ YN+L +C R M
Sbjct: 493 TYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQM 552
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG--------------------- 151
+ +G PDK T+ L+ +C +G +++A + +Q ++ G
Sbjct: 553 LMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRV 612
Query: 152 ---------------------FNPPVRS---------AKQMVNKMIKQGSVPDLETFNSL 181
+NP +++ A ++ +M+++G PD T+ +
Sbjct: 613 ELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVV 672
Query: 182 IETICK-SGELGLCADV---NTNKISIPAVSKEFMIDEAFRLLCNL 223
+C G +G D T+K +P S M+ E LC L
Sbjct: 673 FRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEG---LCAL 715
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGK-MREAQEFLQELSDKGFNPPVRS--------- 158
F M+ KG PD T+ ++ CS G + EA +FL E++DKGF P S
Sbjct: 654 FREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLC 713
Query: 159 -------AKQMVNKMIKQGSVPDLE 176
++VN+++KQ + D E
Sbjct: 714 ALSMEDTLIKLVNRVMKQANFSDSE 738
>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 29/152 (19%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P L+I + K G+ID AVE F + V N + V+
Sbjct: 163 PSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFR 222
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------------- 156
M KG P+ T IL+N C G +++A L+++ + GF P +
Sbjct: 223 EMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKG 282
Query: 157 --RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++A ++++ MI +G D+ T+N I+ +C
Sbjct: 283 RYKAAIELIDYMICKGIEADVCTYNVFIDNLC 314
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 52/189 (27%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----HV-- 107
M+ + +S T + +I F K G I A +VFN+ + F+ + YN+L HV
Sbjct: 329 MRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGD 388
Query: 108 -----------------------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMR 138
+ M G D T +LV++ C GK+
Sbjct: 389 FEEALRLLDHMEAAGLRLNEHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLG 448
Query: 139 EAQEFLQELSDKGFNPPVRSAKQMVNK----------------MIKQGSVPDLETFNSLI 182
EA++FL +S G P + ++N MIK G P T+ SL+
Sbjct: 449 EAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLL 508
Query: 183 ETICKSGEL 191
+ +CK G L
Sbjct: 509 KGLCKGGNL 517
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 39/173 (22%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C + N + V L++ +M++ +PD T++ L+ C GK A
Sbjct: 547 CKSGNLHEAVALFD-------KMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMG 599
Query: 150 KGFNPP-----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL- 191
+G P ++A +M+K+G+ PD FN++I++ + G++
Sbjct: 600 RGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 659
Query: 192 ------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
G+C ++ T I + SK+ + L ++ +G +FP
Sbjct: 660 KANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG--IFP 710
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 33/168 (19%)
Query: 42 LISELSMWKTI--ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV 99
L+ LS++ T+ E + PD L+ L L K G+ D V++ K
Sbjct: 693 LLRYLSLYSTMMREGIFPDKLTFHSLILGL-----SKSGIPDLGVKLLGK---------- 737
Query: 100 LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA 159
++ V M+ G +P + L+N C G ++ A + E+ GF +
Sbjct: 738 MIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAE 797
Query: 160 KQMVNKMIKQGS----------------VPDLETFNSLIETICKSGEL 191
MV ++ G +P + TF +L+ C+ ++
Sbjct: 798 SAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKI 845
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 49/171 (28%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M GF D + + IL+ +C ++ EA E LQE+ + G P V
Sbjct: 379 MKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGD 438
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ +++ KMI G P + TF +L+ CK G+ IDE
Sbjct: 439 FAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGK----------------------IDE 476
Query: 216 AFRLLCNLVEDG----HKLFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
A R+L ++ E G + ++ +L G D A F EM+ K+ P N
Sbjct: 477 ALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPAN 527
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 54/225 (24%)
Query: 41 TLISELSMWKTIE-------LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93
T+IS L+ +E MK + + +++I F + + A E+ +
Sbjct: 358 TMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEV 417
Query: 94 NCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140
+ V YN+L C +MI G P T LV+ +C GK+ EA
Sbjct: 418 GIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEA 477
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV--N 198
L+ + + G +P N +I +N+LI+ +CK G++ L ++
Sbjct: 478 LRILRSMDESGIHP---------NNVI----------YNTLIDFLCKRGDVDLAIELFDE 518
Query: 199 TNKISIPAVSKEF-----------MIDEAFRLLCNLVEDGHKLFP 232
+ S+PA F M ++AF L+ + E+ + FP
Sbjct: 519 MKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREE--RCFP 561
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELS--DKGFNPPVRSAKQMVNKMIKQGSV---- 172
PD T+ ILVN C +G++ +A L +S D P V + +V+ + K G V
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL 229
Query: 173 --------------PDLETFNSLIETICKSGELGL 193
P+ T+N LI+ C+ G + +
Sbjct: 230 AFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISM 264
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFL-QELSDKGFNPP-----------------VRSAK 160
PD T +V+ C SG+++EA F+ Q +S PP + A
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
++V KM +G ++ T N+++ +C++G G
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTG 298
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 31/162 (19%)
Query: 59 SLSVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
+ VFP T S ++I F +G I A +FN+ + V Y L R
Sbjct: 199 TYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVN 258
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------- 156
M+ KG+VPD ++T L+N+ C K+REA + L + KG NP +
Sbjct: 259 GAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVI 318
Query: 157 ----RSAKQM-----VNKMIKQGSVPDLETFNSLIETICKSG 189
R + M + M G +P+L ++ +L+ +C G
Sbjct: 319 LGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQG 360
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 46/200 (23%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---R 111
+K + V P S II +G+ L D A+++F F+C N + V
Sbjct: 126 LKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTILKFDCNPSPKHLNGILEILVSHQN 185
Query: 112 MIRKGF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
I+ F P+ +++ IL+ A+C +G+ + A
Sbjct: 186 YIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQ-------------------ISMAY 226
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---NTNKISIP----------AV 207
+ N+M K+ +PD+E++ L++ +C+ ++ D+ NK +P ++
Sbjct: 227 SLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSL 286
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
++ + EA++LLC + G
Sbjct: 287 CRKKKLREAYKLLCRMKVKG 306
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 34/170 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD+LS + ++ + + A ++ + C ++ YN++ + F R
Sbjct: 274 PDALSY-----TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAM 328
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------- 154
M G +P+ ++ LV C G EA+ L+E+ KGF+P
Sbjct: 329 DACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALI 388
Query: 155 -------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+ A +V +++K G P ET+ ++ IC+ +L ++
Sbjct: 389 KGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSRICEVDDLQRIGEI 438
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 30/192 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+I+E + G + + ++K F C + + F M G PD T+TIL++
Sbjct: 210 LIKEMMRKGFVPD-TSTYSKVITFLCHATKV--EKAFLLFQEMKMVGVTPDVYTYTILID 266
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------AKQ------MVNKMIKQGSVP 173
++C +G + +AQ +E+ G +P V + AKQ + ++M+ G P
Sbjct: 267 SFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP 326
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
+ T+ +L++ +CK+G + +V I + D F C ED H L P+
Sbjct: 327 NDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA-----DSDFYFPC---EDRHTLAPN 378
Query: 234 L---GQFDDAFC 242
+ G D C
Sbjct: 379 VVTYGALVDGLC 390
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 49/226 (21%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K + LM+ S T + +I+ GK G ID ++++F +
Sbjct: 505 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQ-------------------- 544
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD--------------KGFNPP 155
M RKG P+ T+ +L+N C++G + +A+ L E+ +GF+
Sbjct: 545 --MSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 602
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK--EFMI 213
++ ++ +M G+VP + LI+ K+G L + +++ + +P+ K M
Sbjct: 603 FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMY 662
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ LC Q ++AF +SEM + P V+
Sbjct: 663 ASLIQALC-----------LASQVEEAFRLYSEMTRRGFVPELSVF 697
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 35/168 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G P+ + L++ +C +GK+ AQE +++ G+ P V + ++++M K G
Sbjct: 405 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGR 464
Query: 172 V----------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
+ P++ T+ ++I+ +C+ GE L L + + S V+
Sbjct: 465 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 524
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ID G+ D + F++M K PN Y
Sbjct: 525 LIDG---------------LGKAGKIDLSLDLFTQMSRKGCSPNYVTY 557
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 29/151 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ F K G ID+A EVF + T V Y SL +M++
Sbjct: 420 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 479
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------------ 164
P+ T+T +++ C G+ +A + L + +KG +P V + +++
Sbjct: 480 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 539
Query: 165 ----KMIKQGSVPDLETFNSLIETICKSGEL 191
+M ++G P+ T+ LI +C +G L
Sbjct: 540 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 570
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S II+ + G ID A+ +F + + V+ YNSL + M
Sbjct: 220 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 279
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ + VP+ T +L++ + GK++EA E +E+ +G +P +
Sbjct: 280 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 339
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
A M++ M++ PD+ TF SLI+ C
Sbjct: 340 SEANNMLDLMVRNKCSPDIVTFTSLIKGYC 369
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F + ++G V + T++ILV +C SGK++ A+E QE+ G P V + +++ +
Sbjct: 381 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 440
Query: 169 QGSV-------PDLET---------FNSLIETICKSGEL-------------GLCADVNT 199
G + DL+ + ++IE +CK G++ G+ +V T
Sbjct: 441 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 500
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I + K+ + EA LL + EDG+
Sbjct: 501 YTVMISGLCKKGSLSEANILLRKMEEDGN 529
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 40/180 (22%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G + T I++N +C K A L ++ G+ P V A
Sbjct: 108 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 167
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC-------------ADVNTNKISIPA 206
+V++M++ G PD+ T+NS++ IC+SG+ L ADV T I +
Sbjct: 168 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 227
Query: 207 VSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
+ ++ ID A L + G K + SL G+++D +M + PN
Sbjct: 228 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 287
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 35/169 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ G PD T+ +VN C SG A + L+++ ++ V + +++ + + G
Sbjct: 173 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 232
Query: 171 SV----------------PDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKE 210
+ + T+NSL+ +CK+G+ L D+ + +I ++
Sbjct: 233 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 292
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++D +F G+ +A + EM + PN Y
Sbjct: 293 VLLD---------------VFVKEGKLQEANELYKEMITRGISPNIITY 326
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 45/206 (21%)
Query: 23 NIVRHDIYAERTLN-------RLNLTLISELSMWKTIEL-MKPDSLSVFPQTLSLIIEEF 74
N + H+IY TLN R T + + K ++L +PD+ T + +I+
Sbjct: 107 NGIAHNIY---TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT-----TTFNTLIKGL 158
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDK 121
G + AV + ++ CQ V+ YNS+ +C +M + D
Sbjct: 159 FLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV 218
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS---------- 171
T++ ++++ C G + A +E+ KG V + +V + K G
Sbjct: 219 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 278
Query: 172 ------VPDLETFNSLIETICKSGEL 191
VP++ TFN L++ K G+L
Sbjct: 279 MVSREIVPNVITFNVLLDVFVKEGKL 304
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 85/211 (40%), Gaps = 41/211 (19%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+AN V + I + + L EL + PD + T ++++ +G +
Sbjct: 390 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM-----TYGILLDGLCDNGKL 444
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTIL 127
+ A+E+F +++Y ++ +C F + KG P+ T+T++
Sbjct: 445 EKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 504
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++ C G + EA L+ KM + G+ P+ T+N+LI +
Sbjct: 505 ISGLCKKGSLSEANILLR-------------------KMEEDGNAPNDCTYNTLIRAHLR 545
Query: 188 SGELGLCA----DVNTNKISIPAVSKEFMID 214
G+L A ++ + S A S + +ID
Sbjct: 546 DGDLTASAKLIEEMKSCGFSADASSIKMVID 576
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S II+ + G ID A+ +F + + V+ YNSL + M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ + VP+ T +L++ + GK++EA E +E+ +G +P +
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
A M++ M++ PD+ TF SLI+ C
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F + ++G V + T++ILV +C SGK++ A+E QE+ G P V + +++ +
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450
Query: 169 QGSV-------PDLE---------TFNSLIETICKSGEL-------------GLCADVNT 199
G + DL+ + ++IE +CK G++ G+ +V T
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I + K+ + EA LL + EDG+
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGN 539
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 40/180 (22%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G + T I++N +C K A L ++ G+ P V A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC-------------ADVNTNKISIPA 206
+V++M++ G PD+ T+NS++ IC+SG+ L ADV T I +
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 207 VSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
+ ++ ID A L + G K + SL G+++D +M + PN
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 35/169 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ G PD T+ +VN C SG A + L+++ ++ V + +++ + + G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242
Query: 171 SV----------------PDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKE 210
+ + T+NSL+ +CK+G+ L D+ + +I ++
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++D +F G+ +A + EM + PN Y
Sbjct: 303 VLLD---------------VFVKEGKLQEANELYKEMITRGISPNIITY 336
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 45/206 (21%)
Query: 23 NIVRHDIYAERTLN-------RLNLTLISELSMWKTIEL-MKPDSLSVFPQTLSLIIEEF 74
N + H+IY TLN R T + + K ++L +PD+ T + +I+
Sbjct: 117 NGIAHNIY---TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT-----TTFNTLIKGL 168
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDK 121
G + AV + ++ CQ V+ YNS+ +C +M + D
Sbjct: 169 FLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV 228
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS---------- 171
T++ ++++ C G + A +E+ KG V + +V + K G
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 172 ------VPDLETFNSLIETICKSGEL 191
VP++ TFN L++ K G+L
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKL 314
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 37/184 (20%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+AN V + I + + L EL + PD + T ++++ +G +
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM-----TYGILLDGLCDNGKL 454
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTIL 127
+ A+E+F +++Y ++ +C F + KG P+ T+T++
Sbjct: 455 EKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 514
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++ C G + EA L+ KM + G+ P+ T+N+LI +
Sbjct: 515 ISGLCKKGSLSEANILLR-------------------KMEEDGNAPNDCTYNTLIRAHLR 555
Query: 188 SGEL 191
G+L
Sbjct: 556 DGDL 559
>gi|357129487|ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Brachypodium distachyon]
Length = 837
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 38/141 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S + K G +DNA+ +F ++ K ++PD H
Sbjct: 582 TYSAAMNGLCKTGEVDNALGIFRDISS----------------------KYYLPDVVAHN 619
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----------------NKMIKQ 169
IL+N + SGK+ EAQE ++E+ +KG P + + M+ NKMI +
Sbjct: 620 ILINGFRISGKLSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNIEKAIACLNKMIDE 679
Query: 170 GSVPDLETFNSLIETICKSGE 190
P + T+ SLI+ +C +G
Sbjct: 680 EESPTVVTYTSLIDGLCSTGR 700
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 35/168 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M++ GF+PD T++ +N C +G++ A +++S K + P V
Sbjct: 571 MLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDVVAHNILINGFRISGK 630
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A++++ +M+++G P + T+N +I+ CKSG + + +I ++K MIDE
Sbjct: 631 LSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNI---------EKAIACLNK--MIDE 679
Query: 216 ----AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+L+ DG S G+ D+A + +M K PN+ Y
Sbjct: 680 EESPTVVTYTSLI-DG---LCSTGRPDEAIALWHKMMDKGCAPNKIAY 723
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+FP T +L+I+ + K G I+ A+ NK V+ Y SL +C
Sbjct: 645 GLFPSIVTYNLMIDVWCKSGNIEKAIACLNKMIDEEESPTVVTYTSLIDGLCSTGRPDEA 704
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+ +M+ KG P+K +T VN C ++ A + +E+ KGF S +N
Sbjct: 705 IALWHKMMDKGCAPNKIAYTAFVNGLCKRARVDTALTYYEEMMTKGFELDTFSCLYFINF 764
Query: 166 MIKQG-SVPDLETFNSLIET-ICKSGELGLCADVN 198
+I G + E +++ I SG+L + +N
Sbjct: 765 LISTGNATKGCELLKEVLQKDITHSGDLKMAGLIN 799
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 51/218 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVR 111
+TLS+++ F K +D A+E+F+K ++ + +Y+ L +C F
Sbjct: 281 KTLSVLVHGFAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIGKAVKLFEE 340
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK---------------GF--NP 154
M R PD R ++ A+C G A F+ E + + GF +
Sbjct: 341 MKRGEVAPDARLLKKMLEAFCREGDFAIAGLFINENARQLKPSGVIALFNVVLEGFVNHG 400
Query: 155 PVRSAKQMVNKMIKQGSV-------------------PDLETFNSLIETICKSGELGLCA 195
+A Q++ MI+ G P+ ++FN ++ +CK +L
Sbjct: 401 QAEAAYQLLTSMIRGGQGISDGVTVGAHVVDISEDVKPNSDSFNIVVCGLCKVKKLDNAL 460
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNL--VEDGHKLF 231
+ + I K M ++ LC+L +++G+K+F
Sbjct: 461 ALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKMF 498
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F RM ++G+V D+ TIL A+ GK+ A E L + G P ++
Sbjct: 234 FERMSQRGWV-DEHVLTILAVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVLVHGFAK 292
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
A +M +KM G V L ++ LIE +C+ E+G
Sbjct: 293 QLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIG 332
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 52/196 (26%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
L+++ F K G +D AVE+ RM G P ++T
Sbjct: 246 HVLTILAVAFSKWGKVDGAVELLG----------------------RMELLGMRPSEKTL 283
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGF--NPPVRSA-------KQMVNKMI------KQ 169
++LV+ + ++ +A E ++ GF P+ S K+ + K + K+
Sbjct: 284 SVLVHGFAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIGKAVKLFEEMKR 343
Query: 170 GSV-PDLETFNSLIETICKSGEL---GLCADVNTNKISIPAVSKEFMI-----------D 214
G V PD ++E C+ G+ GL + N ++ V F + +
Sbjct: 344 GEVAPDARLLKKMLEAFCREGDFAIAGLFINENARQLKPSGVIALFNVVLEGFVNHGQAE 403
Query: 215 EAFRLLCNLVEDGHKL 230
A++LL +++ G +
Sbjct: 404 AAYQLLTSMIRGGQGI 419
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 36/160 (22%)
Query: 53 ELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----- 105
E MK D FP T +++I G+ G + AVEVF + + +C+ ++ YNSL
Sbjct: 505 EKMKQDG--PFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLG 562
Query: 106 --------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
H+ F+ M KG PD T++ L+ + + K V
Sbjct: 563 KNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDK-------------------VE 603
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A+ + ++MI QG P++ T+N L++ + ++G D+
Sbjct: 604 MARSLFDRMITQGCCPNIVTYNILLDCLERAGRTAETVDL 643
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-------------LHVCFVRMIRKG 116
++E + G A+E+ +K ++YN+ LH + +M + G
Sbjct: 452 MLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDG 511
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
PD T+ IL+++ GK++EA E +EL P + S ++N + K G V
Sbjct: 512 PFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAH 571
Query: 173 ------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
PD+ T+++LIE K+ ++ G C ++ T I + +
Sbjct: 572 MRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCL 631
Query: 208 SKEFMIDEAFRLLCNLVEDG 227
+ E L L E G
Sbjct: 632 ERAGRTAETVDLYAKLREQG 651
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 41/108 (37%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF 178
PD+ T+TI++ +GKM A+E L + +M+ +G P+L +
Sbjct: 307 PDEYTYTIMIRM---TGKMGRAEESL----------------ALFEEMLTKGCTPNLIAY 347
Query: 179 NSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
N++I+ + KSG M+D+A L CN++++
Sbjct: 348 NTMIQALSKSG----------------------MVDKAILLFCNMIKN 373
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNK-----CTAFNCQQCVLLYNS--LHVCFVRMIRKGFVP 119
L++++ E G+ G +D +EV NK A+ + L +S H F M
Sbjct: 386 LNVLVAE-GQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGG 444
Query: 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----------------PPVRSAKQMV 163
D+ + ++ + C GK EA E L ++ +KG + V +
Sbjct: 445 DRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLY 504
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
KM + G PD+ T+N LI ++ + G++ +V
Sbjct: 505 EKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEV 538
>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Brachypodium distachyon]
Length = 649
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 28/156 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVF---------NKCTAFNCQQCVLLYNSLHVCFVRM---I 113
+ I+ F G I NAV VF + +FNC L L R+ +
Sbjct: 274 AFKIAIKSFAAAGEIKNAVGVFEMMRVHGFDDGVESFNCLLVALAQEGLGKEAARVFDRM 333
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK----- 168
R + PD R++T L+ AWC++ + EA ++ +KG P V M++ +++
Sbjct: 334 RDQYTPDLRSYTALMLAWCNARNLVEAGRVWNDMLEKGMKPDVVVHNTMIDGLLRGQRRP 393
Query: 169 -----------QGSVPDLETFNSLIETICKSGELGL 193
+G P++ T+ LI CK G+L +
Sbjct: 394 EAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDM 429
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 52/210 (24%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
K ELMK T +++I + K G +D A+ F + CQ
Sbjct: 397 KMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAGCQ------------- 443
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------- 158
P+ T+T L+ + ++ +M L+E++ KG P R+
Sbjct: 444 ---------PEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALIKLLTNR 494
Query: 159 -----AKQMVNKMIKQGSVPDLETFNSLIETICKSG--------------ELGLCADVNT 199
A ++ KMI +G P + T+N ++++ G G+C DVN+
Sbjct: 495 NMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAVWEEMHRKGICPDVNS 554
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+ I + EA + L +++ G K
Sbjct: 555 YTVFINGHIRHGRPAEACKFLEEMIQKGMK 584
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------- 110
+T + +I+ + D+AV ++ K + + YN + +
Sbjct: 482 RTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYFLGGRNYAMGCAVWE 541
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M RKG PD ++T+ +N G+ EA +FL+E+ KG P + K G
Sbjct: 542 EMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGMKAPQIDYNKFAADFSKAG 601
Query: 171 SVPDL 175
PD+
Sbjct: 602 K-PDI 605
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 30/234 (12%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
K +++MK D + T +L+IE K+G +++ ++F++ + + +Y SL
Sbjct: 261 KILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWN 320
Query: 106 ---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ F + KG +P T+ L++ C G+M A+ + E+ KG N
Sbjct: 321 CRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQ 380
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEA 216
++N ++G + + ++E + G ADV T ++ DEA
Sbjct: 381 VVFNTLINGYCRKGMIDEASMIYDVME------KKGFQADVFTCNTIASCFNRLKRYDEA 434
Query: 217 FRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ L ++E G +L + G ++A F EM K PN Y
Sbjct: 435 KQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITY 488
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 42/218 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----- 109
M+ +++ + +I + + G+ID A +++ Q V N++ CF
Sbjct: 371 MQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKR 430
Query: 110 --------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
RM+ G ++T L++ +C G + EA+ E+S K P +
Sbjct: 431 YDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNV 490
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETIC-------------KSGELG 192
M+ KQG V PD T+ SLI C + G G
Sbjct: 491 MIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 550
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
L + T + I +SK DEAF L + G+ +
Sbjct: 551 LDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKGYTI 588
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 109/279 (39%), Gaps = 57/279 (20%)
Query: 15 FAAVNHIANIVRHDIYAERTLNRLNLTLIS-ELSMWKTIELMKPDSLSVFPQTLSLIIEE 73
F+ + + N V +D + ER + L ++ ++S + + + L+
Sbjct: 94 FSEMRLLLNSVVNDGFYERPVEGLGSAMVDCDIS---------EEKFEFWEKFFDLVFRV 144
Query: 74 FGKHGLIDNAVEVFN----KCTAFNCQQCVLLY------NSLHVC---FVRMIRKGFVPD 120
+ +G+ + + VF+ K + + + C++ + +C F RM+ G
Sbjct: 145 YVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFRRMVDSGVKIT 204
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK--------------- 165
+ TI+V C G++ ++++ ++E S KG P + ++N
Sbjct: 205 VYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILK 264
Query: 166 -MIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEF 211
M K G V + T+ LIE K+G E G+ +D++ I ++
Sbjct: 265 VMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKG 324
Query: 212 MIDEAFRLLCNLVEDGHKLFPS---LGQFDDAFCFFSEM 247
I AF L L E G L PS G D C EM
Sbjct: 325 NIKRAFLLFDELTEKG--LLPSSHTYGALIDGVCKVGEM 361
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S II+ + G ID A+ +F + + V+ YNSL + M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ + VP+ T +L++ + GK++EA E +E+ +G +P +
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
A M++ M++ PD+ TF SLI+ C
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F + ++G V + T++ILV +C SGK++ A+E QE+ G P V + +++ +
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450
Query: 169 QGSV-------PDLE---------TFNSLIETICKSGEL-------------GLCADVNT 199
G + DL+ + ++IE +CK G++ G+ +V T
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I + K+ + EA LL + EDG+
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGN 539
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 43/169 (25%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++++ G+ PD T L+N C GK V A +V++M++ G
Sbjct: 148 KVMKLGYEPDTTTFNTLINGLCLEGK-------------------VSKAVVLVDRMVENG 188
Query: 171 SVPDLETFNSLIETICKSGELGLC-------------ADVNTNKISIPAVSKEFMIDEAF 217
PD+ T+NS++ IC+SG+ L ADV T I ++ ++ ID A
Sbjct: 189 CQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAI 248
Query: 218 RLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
L + G K + SL G+++D +M + PN
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 45/206 (21%)
Query: 23 NIVRHDIYAERTLN-------RLNLTLISELSMWKTIEL-MKPDSLSVFPQTLSLIIEEF 74
N + H+IY TLN R T + + K ++L +PD+ T + +I
Sbjct: 117 NGIAHNIY---TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT-----TTFNTLINGL 168
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDK 121
G + AV + ++ CQ ++ YNS+ +C +M + D
Sbjct: 169 CLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADV 228
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS---------- 171
T++ ++++ C G + A +E+ KG V + +V + K G
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 172 ------VPDLETFNSLIETICKSGEL 191
VP++ TFN L++ K G+L
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKL 314
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 37/184 (20%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+AN V + I + + L EL + PD + T ++++ +G +
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM-----TYGILLDGLCDNGKL 454
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTIL 127
+ A+E+F +++Y ++ +C F + KG P+ T+T++
Sbjct: 455 EKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 514
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++ C G + EA L+ KM + G+ P+ T+N+LI +
Sbjct: 515 ISGLCKKGSLSEANILLR-------------------KMEEDGNAPNDCTYNTLIRAHLR 555
Query: 188 SGEL 191
G+L
Sbjct: 556 DGDL 559
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 67/253 (26%)
Query: 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTL-----------SLIIEEFGKHGLIDNAV 84
+L +IS L +EL K +VF L S +I +G+ G + A+
Sbjct: 190 GKLASAMISTLGRLGKVELAK----AVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAI 245
Query: 85 EVFNKCTAFNCQQCVLLYNS-LHVC-------------FVRMIRKGFVPDKRTHTILVNA 130
+VF+ + ++ YN+ + C F M+ G PD+ T L+ A
Sbjct: 246 KVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLL-A 304
Query: 131 WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
CS G + EA A+++ + M+ +G D+ T+N+L++ +CK G+
Sbjct: 305 VCSRGGLWEA------------------ARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQ 346
Query: 191 LGLC----ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246
+ L +++ T I V+ MID + +G+ DDA F+E
Sbjct: 347 MDLAFEIMSEMPTKNILPNVVTYSTMIDG---------------YAKVGRLDDALNMFNE 391
Query: 247 MQIKTHPPNRPVY 259
M+ +R Y
Sbjct: 392 MKFLGVGLDRVSY 404
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 29/148 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
++ + K G + A++V + ++ V+ YN+L F M R
Sbjct: 407 LLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGR 466
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAK 160
P+ T++ L++ + G +EA E +E G N V S+
Sbjct: 467 VSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSV 526
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKS 188
++++M K+G P++ T+NS+I+ +S
Sbjct: 527 TLLDEMTKEGIRPNVVTYNSIIDAFGRS 554
>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 95/259 (36%), Gaps = 66/259 (25%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---- 105
+T+ LM D +S T+ L + +D+AVE+ + ++ +C + YN L
Sbjct: 165 QTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNL 224
Query: 106 ---------------------HVCFVRMIRK-----------GFVPDKRTHTILVNAWCS 133
+VC + +R+ GF PD + ++ +C
Sbjct: 225 CKSRTLSLVYPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCM 284
Query: 134 SGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVPDLET 177
+ EA E + +KG P V AK+++ M ++G PD T
Sbjct: 285 LSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVT 344
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ SL+ +C+ GE G + T + + K M D+A L +
Sbjct: 345 YTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMK 404
Query: 225 EDGHKL-FPSLGQFDDAFC 242
DG KL S F A C
Sbjct: 405 SDGLKLDMASYATFVRALC 423
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
+H M+ G PDK T + V + C++ ++ +A E ++ELS K +P + S +V
Sbjct: 163 IHQTLNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVK 222
Query: 165 KMIKQGSV----PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ K ++ P+L T+ LI+ +C NT + + + +E F+
Sbjct: 223 NLCKSRTLSLVYPNLVTYTILIDNVC-----------NTKNLREATRLVDILEEEGFKPD 271
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C L K + L + +A ++ M+ K P+ Y
Sbjct: 272 CFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITY 310
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 25/148 (16%)
Query: 107 VCFVRMIRK---GFVPDKRTHTILVNAWCSSGKMREA-----QEFLQELSDKGFNP---- 154
+ F+R + K F PDK T+ IL+ C S + + + L + G +P
Sbjct: 122 IAFLRHMTKTHPSFSPDKSTYHILLTHCCKSTDSKYSTLSLIHQTLNLMVSDGISPDKGT 181
Query: 155 ---PVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC-ADVNTNK 201
VRS A +++ ++ + PD+ ++N L++ +CKS L L ++ T
Sbjct: 182 VDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYPNLVTYT 241
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
I I V + EA RL+ L E+G K
Sbjct: 242 ILIDNVCNTKNLREATRLVDILEEEGFK 269
>gi|224576645|gb|ACN56996.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYXVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ G + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GXAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 154
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 45/193 (23%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F++ ++ G VPD + L++ +C G + +A + E+ G NP + ++N + K
Sbjct: 649 FLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCK 708
Query: 169 QGS----------------VPDLETFNSLIETICKSGEL-------------GLCADVNT 199
G VPD+ T++++I+ CKSG L G+ D
Sbjct: 709 LGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYI 768
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC----------FFSE 246
I I KE +++A L E K SL F+ D+FC F +
Sbjct: 769 YCILIDGCGKEGNLEKALSLFH---EAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDD 825
Query: 247 MQIKTHPPNRPVY 259
M K PN Y
Sbjct: 826 MVDKKLTPNIVTY 838
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 41/195 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+I F K G I+ A +++++ +++YN+L +C F + K
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKD 726
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG------ 170
VPD T++ +++ +C SG + EA + E+ KG +P +++ K+G
Sbjct: 727 LVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKAL 786
Query: 171 ---------SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
SV L FNSLI++ CK G++ L ++ T I I A
Sbjct: 787 SLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYG 846
Query: 209 KEFMIDEAFRLLCNL 223
K M++EA +L ++
Sbjct: 847 KAEMMEEAEQLFLDM 861
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+ G VP+ +TIL+ C G EA + + +KG P +R+ +++
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSGEL 191
K +K G VPD+ +NSLI CK G++
Sbjct: 639 NGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDI 677
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ KG PD T+T+LV+ +C + +EA+ + + G NP + +++ IK+G+
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361
Query: 172 VPD----------------LETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+ + + T+N++I I K+GE+ GL D T +
Sbjct: 362 IEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNL 421
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
I K + +A LL + KL PS + C S++Q
Sbjct: 422 LIDGYLKSHDMAKACELLAEM--KARKLTPSPFTYSVLISGLCHSSDLQ 468
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 99/268 (36%), Gaps = 56/268 (20%)
Query: 48 MWKTIEL---MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
M K EL MK L+ P T S++I + A EV ++ + V +Y +
Sbjct: 432 MAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGT 491
Query: 105 LHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
L +V+ MI G +PD + L+ C + K+ EA+ L ++ +KG
Sbjct: 492 LIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG 551
Query: 152 FNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG------ 189
P ++ A++ M+ G VP+ + LI+ C G
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611
Query: 190 -------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL---- 234
E GL D+ I ++SK EA + ++ G L+ SL
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671
Query: 235 ---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G + A + EM PN VY
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVY 699
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 53/247 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I+ F K G I+ A+ + ++ + V+ YN++ F M
Sbjct: 348 TYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM 407
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ G PD T+ +L++ + S M +A E L E+ + P +
Sbjct: 408 LMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDL 467
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+ A +++++MI+ G P++ + +LI+ + G+ D+
Sbjct: 468 QKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCL 527
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTH 252
I + + ++EA LL ++ E G K L+ G+ A +F +M
Sbjct: 528 IIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGI 587
Query: 253 PPNRPVY 259
PN +Y
Sbjct: 588 VPNNVIY 594
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 39/190 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------GFNP-------- 154
+ M+ VPD T+T ++ A C G + + + L E+ + +N
Sbjct: 230 YGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQT 289
Query: 155 -PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK---SGELGL------CADVNTNKISI 204
V A ++ M+++G PD T+ L++ CK S E L + +N N+ +
Sbjct: 290 GAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTY 349
Query: 205 PAVSKEFM----IDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQI 249
A+ F+ I+EA R+ ++ G KL G+ A F+EM +
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409
Query: 250 KTHPPNRPVY 259
P+ Y
Sbjct: 410 AGLEPDTWTY 419
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 42/205 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ + G ++ AV+VF + C V Y L + F RM+ G
Sbjct: 218 LIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAG 277
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAK 160
VP+ T+T L+ CS G++ A LQ + + G P V A+
Sbjct: 278 LVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQ 337
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
++ +I++G + + SLI+ +CK+G G D +T I +
Sbjct: 338 LLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGL 397
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFP 232
++ + EA +L +++E G + P
Sbjct: 398 CRQKELSEAMLVLDDMMEKGVQPSP 422
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 29/147 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-PVR------------- 157
++ +GFVPD T++ L++ C ++ EA L ++ +KG P PV
Sbjct: 378 LVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVG 437
Query: 158 --SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+K++++KMI G PD+ T+ + + C G + G+C ++ T
Sbjct: 438 ADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNA 497
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK 229
I + + +AF ++V +G K
Sbjct: 498 LICGYANLGLTSQAFSTFKHMVANGCK 524
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 42/196 (21%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK-----------GFVPD 120
+ + GL+ +A +F C + Y +L +C M+R+ G PD
Sbjct: 117 YCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPD 176
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---------------- 164
+ +V+ C +G+ REA+ L + +GF P V +++
Sbjct: 177 PHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFE 236
Query: 165 KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEF 211
+M G P++ T+ LI CKS +L GL +V T I +
Sbjct: 237 RMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDG 296
Query: 212 MIDEAFRLLCNLVEDG 227
+D A+RLL ++ G
Sbjct: 297 QLDCAYRLLQSMENSG 312
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 31/174 (17%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------- 155
LH M++ + + + + C ++ EA+ L E+ P
Sbjct: 562 LHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIA 621
Query: 156 -------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
+ A V+ M+K G +P LE++ +I ++C+ G + V + + S
Sbjct: 622 CCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDML-----S 676
Query: 209 KEFMIDE-AFRLLCN-LVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
KE+ +E A+R+L + L++ G+ + S M+ K + P+ +YA
Sbjct: 677 KEYNYEEIAWRILIDGLLQKGY--------VAECSSLLSVMEEKNYRPSDALYA 722
>gi|255685730|gb|ACU28354.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685734|gb|ACU28356.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685738|gb|ACU28358.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685740|gb|ACU28359.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685742|gb|ACU28360.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + +G + +A L + D+GFNP V + +
Sbjct: 3 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVV 62
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + ++ F + C+ GL + I + K +D A RL
Sbjct: 63 VNGLCKNGRVEEAMDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRVDXAERLFE 115
Query: 222 NLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+ E G F G+ D+A F M+
Sbjct: 116 EMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRME 153
>gi|224076667|ref|XP_002304978.1| predicted protein [Populus trichocarpa]
gi|222847942|gb|EEE85489.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
+ S+ I F K G + +A VF++ + + ++ +N+L F RM
Sbjct: 164 SYSIAINGFCKMGDLVSAEMVFDEMIKSDVEPNLITFNTLLNGFYLNGKFADGERIWSRM 223
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
+ VPD R++ ++A +M+EA E ++E+ DKG FN +R
Sbjct: 224 VEMNVVPDVRSYNAKLHALALENRMKEAIEVVEEMRDKGLELDVFSFNALIRGFLNGEDL 283
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
AKQ +M + G P+ TF LI +C+ G++G ++
Sbjct: 284 EEAKQWYGEMRRHGCEPNRVTFQFLIPFLCEKGDVGFAVEI 324
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 110/263 (41%), Gaps = 41/263 (15%)
Query: 26 RHDIYA---ERTLNRLNLTLISE-LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLID 81
R+DIYA +R + L++I+E L K M ++ + +I +GK G+ D
Sbjct: 55 RYDIYAITVKRLIKYNRLSMINEILDHQKNFPDMTNETFTAH------LIYLYGKAGMFD 108
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR----KGFVPDKR----------THTIL 127
+A ++F++ C + V +N+L + + R K + D R +++I
Sbjct: 109 DARKLFDEMPDLKCPRTVFSFNALLLACINARRFDEIKKLLADFRSELGITFDVVSYSIA 168
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+N +C G + A+ E+ P + + ++N G D E S +
Sbjct: 169 INGFCKMGDLVSAEMVFDEMIKSDVEPNLITFNTLLNGFYLNGKFADGERIWS------R 222
Query: 188 SGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQ 236
E+ + DV + + A++ E + EA ++ + + G +L F +
Sbjct: 223 MVEMNVVPDVRSYNAKLHALALENRMKEAIEVVEEMRDKGLELDVFSFNALIRGFLNGED 282
Query: 237 FDDAFCFFSEMQIKTHPPNRPVY 259
++A ++ EM+ PNR +
Sbjct: 283 LEEAKQWYGEMRRHGCEPNRVTF 305
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 91/218 (41%), Gaps = 41/218 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++I++ K G + A F C V+ Y++L C F RM
Sbjct: 294 TYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRM 353
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+ +G P+ ++ I++ C +GK+ +A + ++L + P V +
Sbjct: 354 LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDT 413
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
++ M+ QG+ P+L +++ L++ IC++G L + ++ +S + +
Sbjct: 414 VSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNT 473
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHP 253
R LC G+ D+A F E++ ++ P
Sbjct: 474 LIRWLC-----------IAGRVDEALEVFRELERRSAP 500
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 16/95 (16%)
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+ +GF+PD T+T +++ C G++ E E E+ ++G+ P +
Sbjct: 214 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 273
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++ +M++ G+V T+N +++ +CK+G +
Sbjct: 274 PKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRV 308
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 25/152 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
FV M+ G PD +T L+ C SGK EA +E + + +
Sbjct: 135 FVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHAT------------- 181
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+VPD+ T+ SLI+ +CK+G + V ++ AV + F+ D + + DG
Sbjct: 182 --AVPDVVTYTSLIDGLCKAGRILEARQVFDDE----AVERGFIPDA---VTYTSIIDG- 231
Query: 229 KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
LG+ ++ F EM+ + + P+ YA
Sbjct: 232 --LCKLGRVEEGCERFHEMRNRGYEPDAVTYA 261
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
+++I + +D A V + C+ + YN +C +M
Sbjct: 9 AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 68
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
K +P T+T LV+ +G++ EA L+++ +KG +P +++
Sbjct: 69 DEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRV 128
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A+++ M+ G PD + +LI+ +CKSG+
Sbjct: 129 EEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGK 162
>gi|224576625|gb|ACN56986.1| At1g03560-like protein [Capsella rubella]
gi|224576631|gb|ACN56989.1| At1g03560-like protein [Capsella rubella]
gi|224576633|gb|ACN56990.1| At1g03560-like protein [Capsella rubella]
Length = 196
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ ++A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVNEAMTLFKRME 154
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 62/195 (31%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
+++I+ + K G +++A+ + LH RMI +GF PD T++++
Sbjct: 26 TVLIDGYAKSGSVEDAIRL------------------LH----RMIDEGFKPDVVTYSVV 63
Query: 128 VNAWCSSGKMREAQEFLQ-----------------------------------ELSDKGF 152
VN C +G++ EA ++ Q E+S+KG
Sbjct: 64 VNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGC 123
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+++ + K G V + T +E E G V T I I + K+
Sbjct: 124 TRDSYCYNALIDALTKHGKVNEAMTLFKRMEE-----EEGCDQTVYTYTILISGMFKDHR 178
Query: 213 IDEAFRLLCNLVEDG 227
+EA +L +++ G
Sbjct: 179 NEEALKLWDMMIDKG 193
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 30/232 (12%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFV 110
IELM ++L T +++I G I+ A ++ ++ V+ YN+L + C
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360
Query: 111 ------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
M KG P+ TH I+V +C GKM +A + ++ + GF+P +
Sbjct: 361 WSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
++N K G++ E F ++ E G + D T + + +E ++EA++
Sbjct: 421 YNTLINGYCKAGNMG--EAFRTMDEM----GRKNMKMDSVTLNTILRTLCREKKLEEAYK 474
Query: 219 LLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
LL + + G+ + + +L G D A + EM+ K P+ Y
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTY 526
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 32/226 (14%)
Query: 60 LSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------- 108
L + P T +++I + +AVE N +NC + YN++ +C
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGD 261
Query: 109 ----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
+ M +G +P++ T+ ILV +C G ++EA ++ ++ P V + ++N
Sbjct: 262 ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLIN 321
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ +G + + +E L L DV + I + I EAF+LL +
Sbjct: 322 GLCNEGRIEEAFKLRDEMEN------LKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMS 375
Query: 225 EDG-------H----KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E G H K + G+ DDA ++M+ P+ Y
Sbjct: 376 EKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTY 421
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 93/247 (37%), Gaps = 60/247 (24%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAF----NCQQCVLLYNSL-------HVCFVR---- 111
L I + + G +A ++F K N C L NSL V F R
Sbjct: 138 LDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFN 197
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
I+ G VP+ T I++ +C K ++A EFL + +P
Sbjct: 198 DAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKG 257
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A+ ++ M +G +P+ T+N L+ CK G L L DV T
Sbjct: 258 RLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYN 317
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD-------------DAFCFFSEMQ 248
+ I + E I+EAF+L + + KL P + ++ +AF EM
Sbjct: 318 MLINGLCNEGRIEEAFKLRDEM--ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMS 375
Query: 249 IKTHPPN 255
K PN
Sbjct: 376 EKGVKPN 382
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 29/146 (19%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
++ G +PD+ T+ +++ +C G + +A +F ++ + F P V
Sbjct: 549 LLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGV 608
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-------------LCADVNTNKI 202
A ++ N + +G D T+N+LI ++CK G L L D T
Sbjct: 609 LEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNA 668
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGH 228
I A++ I EA + ++E G+
Sbjct: 669 IITALTDSGRIREAEEFMSKMLEKGN 694
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
KPD VF T ++++ G+++ A+++FN + + YN+L +
Sbjct: 590 KPD---VF--TCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRL 644
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
M K PD T+ ++ A SG++REA+EF+ ++ +KG P
Sbjct: 645 DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLP 696
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 42/202 (20%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRMIR 114
S +++ K G+I A +V + + V+ Y +L H F M+
Sbjct: 712 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 771
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS--------- 158
KG VP+ R++ IL+N +C +M +A L+++S +G +N +
Sbjct: 772 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQH 831
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-------------LCADVNTNKISIP 205
A + ++M+ G +PDL T+ L++ +CK+ L L AD+ I+I
Sbjct: 832 AIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAID 891
Query: 206 AVSKEFMIDEAFRLLCNLVEDG 227
+ + ++ A L NL G
Sbjct: 892 GMCRAGELEAARDLFSNLSSKG 913
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 34/173 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
++++ G PD T T L+ C GK+ EA ++ +GF P V + ++N
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+MI +G P++ T+NSLI +CK E + DV T
Sbjct: 163 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 222
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQI 249
+ A+ KE M+ EA ++ ++ G + P++ ++ D C +E+ +
Sbjct: 223 LNTVVDALCKEGMVAEAHDVVDMMIHRGVE--PNVVTYNALMDGHCLRNEVDV 273
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 46/265 (17%)
Query: 40 LTLISELSMWKTIELM--KPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNC 95
LT I+++ + T+ + + DS + P TL+++I F + A V K
Sbjct: 588 LTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGF 647
Query: 96 QQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
Q V+ Y +L +MI KG PD T+ L++A C+ + + L E+ + P
Sbjct: 648 QPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPN 707
Query: 156 V----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------- 191
V A +V+ MIK+G PD+ T+ +L++ C E+
Sbjct: 708 VVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFD 767
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPSL 234
G +V + I I + +D+A LL + G H L +
Sbjct: 768 TMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLC-HV 826
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ A F EM P+ Y
Sbjct: 827 GRLQHAIALFHEMVASGQIPDLVTY 851
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------- 156
+LH+ F +MI +GF P+ T+ L+N C ++ EA E+ KG +P +
Sbjct: 134 ALHL-FDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLI 192
Query: 157 ---------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+ ++N+M+ +PD+ T N++++ +CK G + DV
Sbjct: 193 HGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDV 242
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRM 112
TL+ +++ K G++ A +V + + V+ YN+L H F M
Sbjct: 222 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 281
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ K V + ++ L+N +C + +A +E+S + P +
Sbjct: 282 VHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRL 341
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A + ++M+ +G +PDL T+ +L + +CK+ L
Sbjct: 342 QDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHL 376
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 27/142 (19%)
Query: 70 IIEEFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
++E+ GLI + V + C Q + L++ M+ G +PD T+
Sbjct: 800 LLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH-------EMVASGQIPDLVTYR 852
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQ 169
IL++ C + + EA L+ + + + +A+ + + + +
Sbjct: 853 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSK 912
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G PD+ T+N +I +CK G L
Sbjct: 913 GLQPDVRTYNIMIHGLCKRGLL 934
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGFV----- 118
T + +I G + +A+ +F++ A ++ Y +L ++C R + K
Sbjct: 327 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI 386
Query: 119 ------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
PD + +T +++ C +G++ +A++ LS KG P V + M++ + KQG
Sbjct: 387 EGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG 444
>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 56/238 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T + +++ + + G ++NA + ++ ++YNS+ +
Sbjct: 272 RTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSD 331
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF-----------NPPVRS-- 158
MI K PD+ T++I++ C +G + EA +FLQ + + N RS
Sbjct: 332 MIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNN 391
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS------------ 203
AKQ++ M +G VPD+ TF +LI+ CK G++ V I
Sbjct: 392 LAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNS 451
Query: 204 -IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQ 248
I +KE D A L+ L G LF + G+ D AF FSEM+
Sbjct: 452 VINGFAKEGSFDPAILLIDTLRRMG--LFDVVTYNTLIHGYCNCGKIDQAFALFSEMR 507
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------HVCFVRMI 113
T +I+ K G ++NA++V+ K + +L+YNS+ + + +
Sbjct: 413 TFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTL 472
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS-------- 158
R+ + D T+ L++ +C+ GK+ +A E+ + G +N + S
Sbjct: 473 RRMGLFDVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVL 532
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICK 187
AK+++ M+ +G +PD T+ LI + K
Sbjct: 533 QAKELMKMMVLRGLIPDYVTYTILITSFSK 562
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 89/222 (40%), Gaps = 45/222 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
WK + M T +LII GK G + AV V + V+ +N +
Sbjct: 148 WKMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDG 207
Query: 109 FVRM---------IRKGFV-------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
++M +RK V PD T+ VN +C G + A+EF +E+ K
Sbjct: 208 AIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEI 267
Query: 153 NPPVRSAKQMV----------------NKMIKQGSVPDLETFNSLIETICKSGEL----- 191
P VR+ +V ++++++G +P+ +NS+I + G++
Sbjct: 268 EPNVRTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASL 327
Query: 192 --------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ D T I I + + ++EAF+ L ++E
Sbjct: 328 LLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILE 369
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 30/232 (12%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFV 110
IELM ++L T +++I G I+ A ++ ++ V+ YN+L + C
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360
Query: 111 ------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
M KG P+ TH I+V +C GKM +A + ++ + GF+P +
Sbjct: 361 WSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
++N K G++ E F ++ E G + D T + + +E ++EA++
Sbjct: 421 YNTLINGYCKAGNMG--EAFRTMDEM----GRKNMKMDSVTLNTILRTLCREKKLEEAYK 474
Query: 219 LLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
LL + + G+ + + +L G D A + EM+ K P+ Y
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTY 526
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 32/226 (14%)
Query: 60 LSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------- 108
L + P T +++I + +AVE N +NC + YN++ +C
Sbjct: 202 LGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGD 261
Query: 109 ----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
+ M +G +P++ T+ ILV +C G ++EA ++ ++ P V + ++N
Sbjct: 262 ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLIN 321
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ +G + + +E L L DV + I + I EAF+LL +
Sbjct: 322 GLCNEGRIEEAFKLRDEMEN------LKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMS 375
Query: 225 EDG-------H----KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
E G H K + G+ DDA ++M+ P+ Y
Sbjct: 376 EKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTY 421
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 93/247 (37%), Gaps = 60/247 (24%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAF----NCQQCVLLYNSL-------HVCFVR---- 111
L I + + G +A ++F K N C L NSL V F R
Sbjct: 138 LDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFN 197
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
I+ G VP+ T I++ +C K ++A EFL + +P
Sbjct: 198 DAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKG 257
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ A+ ++ M +G +P+ T+N L+ CK G L L DV T
Sbjct: 258 RLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYN 317
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD-------------DAFCFFSEMQ 248
+ I + E I+EAF+L + + KL P + ++ +AF EM
Sbjct: 318 MLINGLCNEGRIEEAFKLRDEM--ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMS 375
Query: 249 IKTHPPN 255
K PN
Sbjct: 376 EKGVKPN 382
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
++ G +PD+ T+ +++ +C G + +A +F ++ + F P V
Sbjct: 549 LLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGM 608
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-------------LCADVNTNKI 202
A ++ N + +G D T+N+LI ++CK G L L D T
Sbjct: 609 LEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNA 668
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I A++ I EA + ++E G
Sbjct: 669 IITALTDSGRIREAEEFMSKMLEKG 693
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
KPD VF T ++++ G+++ A+++FN + + YN+L +
Sbjct: 590 KPD---VF--TCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRL 644
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
M K PD T+ ++ A SG++REA+EF+ ++ +KG P
Sbjct: 645 DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696
>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g62470, mitochondrial; Flags: Precursor
gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 599
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 42/219 (19%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112
ELMK + +T++ +++ G+ L A +F+K
Sbjct: 253 ELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDK----------------------- 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++ F P+ T+T+L+N WC + EA ++ D+G P + + M+ +++
Sbjct: 290 LKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKK 349
Query: 173 PD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-- 229
D ++ F+ + KS G C +V + I I K+ ++ A ++V+ G +
Sbjct: 350 SDAIKLFH-----VMKSK--GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402
Query: 230 ---------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F + + D + EMQ K HPP+ Y
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTY 441
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 51/194 (26%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
++ +++I +F K ++ A+E F+ M+ G PD +
Sbjct: 369 RSYTIMIRDFCKQSSMETAIEYFDD----------------------MVDSGLQPDAAVY 406
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIK 168
T L+ + + K+ E L+E+ +KG P ++ A ++ NKMI+
Sbjct: 407 TCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQ 466
Query: 169 QGSVPDLETFNSLIET--ICKSGEL-----------GLCADVNTNKISIPAVSKEFMIDE 215
P + TFN ++++ + ++ E+ G+C D N+ + I + E E
Sbjct: 467 NEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSRE 526
Query: 216 AFRLLCNLVEDGHK 229
A R L +++ G K
Sbjct: 527 ACRYLEEMLDKGMK 540
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T + +I+ + ++A ++NK + + +N + +
Sbjct: 439 KTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEE 498
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
MI+KG PD ++T+L+ GK REA +L+E+ DKG P+
Sbjct: 499 MIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPL 543
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 30/225 (13%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118
S + + S+I E G+ + D + ++K + C + + F M R G V
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTST--YSKVLGYLCNASKM--ELAFLLFEEMKRGGLV 515
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQM 162
D T+TI+V+++C +G + +A+++ E+ + G P V A ++
Sbjct: 516 ADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANEL 575
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---NTNKISIPAVS---KEFMIDEA 216
M+ +G +P++ T+++LI+ CK+G++ + +P V K++ D +
Sbjct: 576 FETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNS 635
Query: 217 FRLLCNLVEDGHKL--FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
R N+V G L F L + ++A M ++ PN+ VY
Sbjct: 636 ERP--NVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVY 678
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 50/217 (23%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR- 111
E MK L T +++++ F K GLI+ A + FN+ C V+ Y +L +++
Sbjct: 507 EEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566
Query: 112 ------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQE----------------F 143
M+ +G +P+ T++ L++ C +G+M +A + +
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMY 626
Query: 144 LQELSDKGFNPP-----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++ D P V A+++++ M +G P+ +++LI+ +C
Sbjct: 627 FKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLC 686
Query: 187 KSGELGLCADVNT--NKISIPAVSKEF--MIDEAFRL 219
K G+L +V ++ PA + +ID F++
Sbjct: 687 KVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKV 723
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +G P++ + L++ C GK+ EAQE E+S+ GF + +
Sbjct: 666 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKR 725
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A ++++KM++ P++ + +I+ +CK G+
Sbjct: 726 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 760
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M + FVPD +T L++ C + EA +FL + P V +
Sbjct: 293 METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQ 352
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
K+++N M+ +G P + FNSL+ C SG+
Sbjct: 353 LGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGD 387
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 49/210 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-CFVR------------MIRKG 116
+I + L + A++ N+ A +C V+ Y++L C + M+ +G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P + LV+A+C+SG D + A +++ KM+K G P
Sbjct: 368 CYPSPKIFNSLVHAYCTSG-------------DHSY------AYKLLKKMVKCGHTPGYV 408
Query: 177 TFNSLIETICKSGE------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+N LI +IC + L L + ++ V + + R LC
Sbjct: 409 VYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLC--------- 459
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
S G+++ AF EM + P+ Y+
Sbjct: 460 --SAGKYEKAFSVIREMIGQGFIPDTSTYS 487
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 63 FPQTL---SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV------- 110
FP TL S +I+ + K D A +V +K +C V++Y + +C V
Sbjct: 706 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 765
Query: 111 ----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
M KG P+ T+T +++ + GK+ E L+ + KG P + + +++
Sbjct: 766 KLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHC 825
Query: 167 IKQGSVPDLETFNSLIETI 185
K G+ L+ ++L+E +
Sbjct: 826 CKNGA---LDVAHNLLEEM 841
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
++ +E M L+ T +++I K G + A+E+F + + V+ Y SL
Sbjct: 199 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 258
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F +R+G PD + L+N+ +SG + A E + E+ K P
Sbjct: 259 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 318
Query: 156 ----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A++++++M K+G PDL T+N+LI G++
Sbjct: 319 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDV 370
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 29/150 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMIRKG 116
+I G ID A E+ + + YN+L +C + M ++G
Sbjct: 290 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD T+ L++ + G +++A E+ +KGFNP + + A+
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGE 190
MV +M++ G PD T+ SLIE + E
Sbjct: 410 NMVKEMVENGITPDDSTYISLIEGLTTEDE 439
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 91/235 (38%), Gaps = 63/235 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV-PDKRTH 124
T +I + K G +D AV+VF++ M+ KG V P+ +
Sbjct: 110 TYGTVISGWCKVGRVDEAVKVFDE----------------------MLTKGEVKPEAVMY 147
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIK 168
L+ +C GK+ A + + ++G V + A ++V +M
Sbjct: 148 NALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 207
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
+G PD+ T+N LI CK G + G+ A V T I A+SK+ + E
Sbjct: 208 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQE 267
Query: 216 AFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+L V G + L+ +L G D AF EM+ K P+ Y
Sbjct: 268 TDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTY 322
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 80/219 (36%), Gaps = 40/219 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCFV------------RMIRKG 116
+I + G +D A+ ++ V YN L H F+ M KG
Sbjct: 150 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 209
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
PD T+ IL+N C G +++A E + +S +G V + ++ + K+G V
Sbjct: 210 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD 269
Query: 173 ------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
PDL +N+LI + SG + ++ + + R L
Sbjct: 270 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 329
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C LG+ D+A EM + P+ Y
Sbjct: 330 C-----------LLGRVDEARKLIDEMTKRGIQPDLVTY 357
>gi|356507504|ref|XP_003522504.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Glycine max]
Length = 555
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-- 163
H F M +GF PD +++L+N +C G++ EA FL+ L G ++ ++
Sbjct: 33 HRLFNVMKERGFQPDLICYSVLINGYCKLGRLEEAISFLRLLERDGLALGIKGYSSLIAG 92
Query: 164 --------------NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSK 209
+M K+G VPD+ + LI + G +G A + I I V
Sbjct: 93 FFSARRYNEAHAWYGRMFKKGIVPDVVLYTILIRGLSSEGRVGEAAKMLGEMIQIGLVPD 152
Query: 210 EFMIDEAFRLLCNL 223
+E + LC++
Sbjct: 153 AVCYNEIIKGLCDV 166
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 51/141 (36%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE--------------- 146
YN H + RM +KG VPD +TIL+ S G++ EA + L E
Sbjct: 99 YNEAHAWYGRMFKKGIVPDVVLYTILIRGLSSEGRVGEAAKMLGEMIQIGLVPDAVCYNE 158
Query: 147 ----LSDKGFNPPVRS--------------------------------AKQMVNKMIKQG 170
L D G RS A+++ NKM K G
Sbjct: 159 IIKGLCDVGLLDRARSLQLEISEHQGFHNVCTHTIIICDLCKRGMAEKAQEIFNKMEKLG 218
Query: 171 SVPDLETFNSLIETICKSGEL 191
P + TFN+L++ +CK+G+L
Sbjct: 219 CFPSIVTFNALMDGLCKAGKL 239
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 85/227 (37%), Gaps = 70/227 (30%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++II + K G+ + A E+FNK C ++ +N+
Sbjct: 190 THTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNA--------------------- 228
Query: 126 ILVNAWCSSGKMREAQEFLQEL---------------SDKGFNP--------------PV 156
L++ C +GK+ EA L ++ SD+ + +
Sbjct: 229 -LMDGLCKAGKLEEAHLLLYKMEIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQL 287
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKS----GELGLCADVNTNKISIPAVSKEFM 212
A +++ ++ G +PD+ T+N LI CK+ G L L D+ +S V+ +
Sbjct: 288 LDAYKLLIQLAGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTL 347
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
ID FR +G+ +DAF M P+ VY
Sbjct: 348 IDGLFR---------------VGREEDAFKIHKHMLKHGCEPSFEVY 379
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-PV----------- 156
+++ G +PD T+ +L+N +C + + A + +++ +KG +P PV
Sbjct: 294 LIQLAGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTLIDGLFR 353
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A ++ M+K G P E + +L+ +C+
Sbjct: 354 VGREEDAFKIHKHMLKHGCEPSFEVYRALMTWLCR 388
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 16/102 (15%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------RS------ 158
M +G PD T+ +LVN C G++ EA +FL + G P V RS
Sbjct: 42 MGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGR 101
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A++++ +M+++G P + TFN LI +C+ G LG D+
Sbjct: 102 WMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDI 143
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I + GL+ A+++ K C L YN L F + M
Sbjct: 123 TFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIM 182
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G PD T+ ++ A C GK+ A E L +LS KG +P
Sbjct: 183 VSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKT 242
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A +++++M +G PD+ T++SLI + + G++
Sbjct: 243 DQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKV 277
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 59/251 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++IE + A+++ ++ + C+ V+ YN L +C M
Sbjct: 18 TYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSM 77
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
G P+ TH I++ + CS+G+ +A++ L E+ KG +P V + ++N
Sbjct: 78 PSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLL 137
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
KM G P+ ++N L+ CK ++ G D+ T
Sbjct: 138 GRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTM 197
Query: 204 IPAVSKEFMIDEAFRLL-------C-------NLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
+ A+ K+ +D A LL C N V DG +G+ D A EM+
Sbjct: 198 LTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDG---LSKVGKTDQAVELLHEMRG 254
Query: 250 KTHPPNRPVYA 260
K P+ Y+
Sbjct: 255 KGLKPDVITYS 265
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ- 169
R + K PD T+TIL+ A C+ + +A + L E+ +G P V + +VN M K+
Sbjct: 6 RQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEG 65
Query: 170 ---------------GSVPDLETFNSLIETICKSG 189
GS P++ T N ++ ++C +G
Sbjct: 66 RLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTG 100
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
+KPD + T S +I + G ++ A++ F+ F + YNS+ +
Sbjct: 257 LKPDVI-----TYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQ 311
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
MI KG P + ++TIL+ + G +EA E L EL +G SA+Q
Sbjct: 312 TDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKK-SSAEQ 370
Query: 162 MVNKM 166
+V ++
Sbjct: 371 VVVRL 375
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 29/180 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-----------------LHVC 108
T + ++ K G +D AVE+ N+ ++ C ++ YN+ LH
Sbjct: 193 TYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLH-- 250
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
M KG PD T++ L+ GK+ EA +F ++ G P + ++ + K
Sbjct: 251 --EMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCK 308
Query: 169 -QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
Q + ++ +I CK E+ + I I ++ E + EA LL L G
Sbjct: 309 AQQTDRAIDFLAYMISKGCKPTEV-------SYTILIEGIANEGLAKEALELLNELCSRG 361
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 109/279 (39%), Gaps = 71/279 (25%)
Query: 46 LSMWKTIELMK--PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC-TAFNCQQCVLLY 102
L +KT+ K PD + T +++++ K G ++ A ++F T+ C V+ Y
Sbjct: 85 LGYFKTVAGTKCTPDII-----TFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139
Query: 103 NSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
++ + M G P+ T+++LV C +G+ + LQE++
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR 199
Query: 150 KGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKS----- 188
+GF P V A ++V MI+ G P + T+NSL+E C+S
Sbjct: 200 RGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDR 259
Query: 189 --------GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD-- 238
E G DV I + ++ +D+A LL +V + P + +
Sbjct: 260 AFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV--AARCVPDVITYSTI 317
Query: 239 ----------------DAFCFFSEMQIKTH-PPNRPVYA 260
+A C EM +T PPN YA
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYA 356
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 42/209 (20%)
Query: 93 FNCQQCVLLYNSLHVCFVRMIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
NC +L+ H V++ R+ VP++ T+ L++ C +GK+ +A E L E+ D+G
Sbjct: 1 MNCALNLLVRAGQHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRG 60
Query: 152 FNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSGEL---- 191
P V ++ + K G PD+ TFN L++ + KSG +
Sbjct: 61 IPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120
Query: 192 ---------GLC-ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPS 233
C +V T I + K+ +D A LL + E G L
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180
Query: 234 L---GQFDDAFCFFSEMQIKTHPPNRPVY 259
L G+ D F EM + P+ +Y
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMY 209
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
+ +K +M P + +I+ K G +D AV VF + + + V YNS+
Sbjct: 405 AAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVL 463
Query: 106 -HVCFVR-----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+C V MI K PD ++ L+ C + EA E Q + KGF
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETF-NSLIET 184
V +VN++ K+ + D N LIE
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDAHGVANKLIEA 555
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 48/231 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + ++E F + +D A + + C V+ YN++ R M
Sbjct: 243 TYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQM 302
Query: 113 IRKGFVPDKRTHTILVNAWC------SSGKMREAQEFLQELSDKGFNP------------ 154
+ VPD T++ +++ C + K+ A E L+ + G P
Sbjct: 303 VAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGL 362
Query: 155 -PVRSAKQ---MVNKMIKQGSVPDLETFNSLIETICKSGEL-------GLCA--DVNTNK 201
R ++Q ++ +MI VPDL +F+ +I ++CKS +L G+ + + N
Sbjct: 363 CRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNP 422
Query: 202 IS----IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
++ I +SK +D+A R+ +VE + D C ++
Sbjct: 423 VAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIE 473
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 28/207 (13%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTI 126
+D A+E+ C V+ YNSL F R M +G PD +
Sbjct: 222 LDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNT 281
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++ C ++ +AQ L+++ P V + +++ + K V + E +
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILE 341
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF--------- 237
+ G + T + I + + +A LL +++ ++ P L F
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID--SEVVPDLSSFSMVIGSLCK 399
Query: 238 ----DDAFCFFSEMQIKTHPPNRPVYA 260
D A+ F M + PN YA
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYA 426
>gi|260780546|gb|ACX50819.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 182
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 23 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVV 82
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K IDEA RL
Sbjct: 83 VNGLCKNGRVEEALDYFQT-----CQFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFE 135
Query: 222 NLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+ E G F G+ D+A F M+
Sbjct: 136 EMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRME 173
>gi|260780506|gb|ACX50799.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780508|gb|ACX50800.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780510|gb|ACX50801.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780512|gb|ACX50802.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780514|gb|ACX50803.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780516|gb|ACX50804.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780518|gb|ACX50805.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780520|gb|ACX50806.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780522|gb|ACX50807.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780524|gb|ACX50808.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780526|gb|ACX50809.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780528|gb|ACX50810.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780530|gb|ACX50811.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780532|gb|ACX50812.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780534|gb|ACX50813.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780536|gb|ACX50814.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780538|gb|ACX50815.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780540|gb|ACX50816.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780542|gb|ACX50817.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780544|gb|ACX50818.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780550|gb|ACX50821.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780552|gb|ACX50822.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780554|gb|ACX50823.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780556|gb|ACX50824.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780560|gb|ACX50826.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780562|gb|ACX50827.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780564|gb|ACX50828.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780566|gb|ACX50829.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780568|gb|ACX50830.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780570|gb|ACX50831.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780572|gb|ACX50832.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780574|gb|ACX50833.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780576|gb|ACX50834.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780578|gb|ACX50835.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780580|gb|ACX50836.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780582|gb|ACX50837.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780584|gb|ACX50838.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780586|gb|ACX50839.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780588|gb|ACX50840.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780590|gb|ACX50841.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780592|gb|ACX50842.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780594|gb|ACX50843.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780596|gb|ACX50844.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780598|gb|ACX50845.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780600|gb|ACX50846.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780602|gb|ACX50847.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780604|gb|ACX50848.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780606|gb|ACX50849.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780608|gb|ACX50850.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780610|gb|ACX50851.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780612|gb|ACX50852.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780614|gb|ACX50853.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780616|gb|ACX50854.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780618|gb|ACX50855.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780620|gb|ACX50856.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780622|gb|ACX50857.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780624|gb|ACX50858.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 183
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 24 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVV 83
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K IDEA RL
Sbjct: 84 VNGLCKNGRVEEALDYFQT-----CQFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFE 136
Query: 222 NLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+ E G F G+ D+A F M+
Sbjct: 137 EMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRME 174
>gi|224576655|gb|ACN57001.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ G + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GXAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRME 154
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F MI+KGF PD+ T+T L++ +C G+M++A ++ G P V + + + + K
Sbjct: 273 FNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCK 332
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G +L+T N L+ +C+ GL +++T + + K I +A +L+ + E G
Sbjct: 333 SG---ELDTANELLHEMCRK---GLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG 385
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 36/173 (20%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A N Q V L M G PD T+T L++A+ +G+M +A+E L+E+ D
Sbjct: 366 CKAGNILQAVKLMEE-------MKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLD 418
Query: 150 KGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-- 191
+G P V ++++ M+++G +P+ T+NS+++ C +
Sbjct: 419 RGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRI 478
Query: 192 ------GLCA-----DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
G+CA D NT I I K + EA+ L +VE L S
Sbjct: 479 STEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTAS 531
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 25/122 (20%)
Query: 93 FNCQQCVLLYNSL---------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143
+N + +L NSL H +RM KG +PD ++T +++ +C G++++ +
Sbjct: 108 WNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQL 167
Query: 144 LQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++E+ KG P V ++++ +M+K+G PD + +LI+ CK
Sbjct: 168 VKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCK 227
Query: 188 SG 189
G
Sbjct: 228 LG 229
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +G VPD T+ IL+ C + M+EA +E+ +K FN S
Sbjct: 486 MCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKK 545
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+Q+ +M ++G V E +N ++ + G +
Sbjct: 546 LLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNM 581
>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
Length = 590
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN--KCTAF--NCQQCVLLYNSLHVC---- 108
PDS S Q LS ++ + + +A++VF + F + C +L NSL
Sbjct: 123 PDSNS---QILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTN 179
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
+ +M+R G VP+ +L++A C SG + +A++ L E+ + P + + ++
Sbjct: 180 MVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLI 239
Query: 164 ----------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
++M + G PD+ T+NSLI C+ G +
Sbjct: 240 SLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRM 283
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 40/232 (17%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR- 114
+S +FP T + +I + K G+ A+ + ++ ++ YNSL F R R
Sbjct: 224 ESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRM 283
Query: 115 ----------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------- 156
G P+ T+T L++ +C + EA + + +G +P V
Sbjct: 284 REALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILR 343
Query: 157 --------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
+ A +++N+M ++ PD T N+LI CK G++G V +
Sbjct: 344 KLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKP 403
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+F C L E D A F EM P+ Y+
Sbjct: 404 DQFTFKALIHGFCKLHE-----------VDSAKEFLFEMLDAGFSPSYSTYS 444
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV------- 163
+M+ G PD+ T L++ +C ++ A+EFL E+ D GF+P + +V
Sbjct: 395 KMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQD 454
Query: 164 ---------NKMIKQGSVPDLETFNSLIETICK 187
+++ ++G D+ + +LI +CK
Sbjct: 455 NKEAVIRLPDELSRKGLFVDISVYRALIRRLCK 487
>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 55/250 (22%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVR 111
QT S++++ F K GL+ A V + V+ YNSL F
Sbjct: 288 QTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGL 347
Query: 112 MIRKG--FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------- 156
M+R+G +P TH L++ WC ++ +A L E+ KG +P V
Sbjct: 348 MVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEV 407
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTN 200
+A+++ M + G VP+L+T +++ + K + GL D+
Sbjct: 408 KKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIY 467
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQI 249
I + + K +++A +LL ++ G K+ G DDA +M+
Sbjct: 468 NIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKE 527
Query: 250 KTHPPNRPVY 259
PPN+ Y
Sbjct: 528 NGCPPNKCSY 537
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 69/214 (32%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------------FVRMI-R 114
I++ K GL+ A+ + ++ N + V+ YN L +C F M+
Sbjct: 221 ILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAE 280
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG VPD +T +ILV+ +C G + A+ +V M++ G P+
Sbjct: 281 KGIVPDVQTFSILVDGFCKEGLLLRAE-------------------SVVGFMVRIGVEPN 321
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS- 233
+ T+NSLI C ++ +EA R+ +V +G PS
Sbjct: 322 VVTYNSLIAGYCLRSQM----------------------EEAMRVFGLMVREGEGCLPSV 359
Query: 234 ------------LGQFDDAFCFFSEMQIKTHPPN 255
+ + D A SEM K P+
Sbjct: 360 VTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPD 393
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 18/133 (13%)
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK-GFVPDKRTHTILVNAWCSSG 135
H L D + +V A NC C + +L + ++ K G P T +VN C G
Sbjct: 101 HSLGDGSADVCTLNIAINCL-CHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEG 159
Query: 136 KMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQGSVPDLETFN 179
+ A ++++ + G++ R+ +VN KM+K+ P++ +N
Sbjct: 160 DVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYN 219
Query: 180 SLIETICKSGELG 192
++++ +CK G +G
Sbjct: 220 AILDGLCKRGLVG 232
>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Vitis vinifera]
Length = 590
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN--KCTAF--NCQQCVLLYNSLHVC---- 108
PDS S Q LS ++ + + +A++VF + F + C +L NSL
Sbjct: 123 PDSNS---QILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTN 179
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
+ +M+R G VP+ +L++A C SG + +A++ L E+ + P + + ++
Sbjct: 180 MVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLI 239
Query: 164 ----------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
++M + G PD+ T+NSLI C+ G +
Sbjct: 240 SLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRM 283
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 40/232 (17%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR- 114
+S +FP T + +I + K G+ A+ + ++ ++ YNSL F R R
Sbjct: 224 ESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRM 283
Query: 115 ----------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-------- 156
G P+ T+T L++ +C + EA + + +G +P V
Sbjct: 284 REALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILR 343
Query: 157 --------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
+ A +++N+M ++ PD T N+LI CK G++G V +
Sbjct: 344 KLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKP 403
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+F C L E D A F EM P+ Y+
Sbjct: 404 DQFTFKALIHGFCKLHE-----------VDSAKEFLFEMLDAGFSPSYSTYS 444
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV------- 163
+M+ G PD+ T L++ +C ++ A+EFL E+ D GF+P + +V
Sbjct: 395 KMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQD 454
Query: 164 ---------NKMIKQGSVPDLETFNSLIETICK 187
+++ ++G D+ + +LI +CK
Sbjct: 455 NKEAVIRLPDELSRKGLFVDISVYRALIRRLCK 487
>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 376
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---------RMIRK--- 115
S +I K +D AV V N C+ +YN+L V R++R+
Sbjct: 133 SAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRVLREMGT 192
Query: 116 -GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
F P T++ L+N C + EA + ++E+ DKG NP V
Sbjct: 193 THFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDCKVEK 252
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193
A Q+ N++I +G PD++ N +I +C G++ L
Sbjct: 253 AFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQL 287
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD--------------KGF--NP 154
++I KGF PD + H I+++ CS GKM+ A ++ +GF +
Sbjct: 259 QVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDG 318
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK----SGELGLCADVNTNKISIPAVS 208
R+A + ++++ G PD+ ++N ++ +C SG + D KI + ++
Sbjct: 319 DFRNALVIWARIMRNGLQPDIISYNITLKGLCSCNRISGAILFLHDAVCKKIVLTVIT 376
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 54/213 (25%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+S+W ELMK T +++ F K+G ++ SL
Sbjct: 79 ISIW---ELMKESGYVEDSITYGILVHGFCKNGYLNK---------------------SL 114
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
HV + RKG V D ++ ++N C K+ +A L + G P ++N
Sbjct: 115 HVLEIAE-RKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALING 173
Query: 166 MI-------------KQGSV---PDLETFNSLIETICKSGELGLCAD------------- 196
++ + G+ P + T+++LI +CK G D
Sbjct: 174 LVGASKFEDAIRVLREMGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPS 233
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
V T + I + + +++AF+L ++ G K
Sbjct: 234 VITYSLLIKGLCLDCKVEKAFQLWNQVISKGFK 266
>gi|255685746|gb|ACU28362.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+ F MIRKG P+ +T+L++ + +G + +A L + D+GFNP V + +VN
Sbjct: 6 YAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNG 65
Query: 166 MIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ K G V + L+ F + C+ GL + I + K +D A RL +
Sbjct: 66 LCKNGRVEEALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRVDXAERLFEEMS 118
Query: 225 EDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
E G F G+ D+A F M+
Sbjct: 119 EKGCTRDSYCYNALIDAFTKHGKVDEALALFKRME 153
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 31/157 (19%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----HV------ 107
V P T + +I + K G + NA V ++ + SL H
Sbjct: 451 GVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDA 510
Query: 108 --CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS 158
CF M G P+ T+ +L++A CS+G + +A + L ++ G FN P+ S
Sbjct: 511 FDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILS 570
Query: 159 ---------AKQMVNKMIKQGSVPDLETFNSLIETIC 186
A+ + N M++ G VPD T+NSLI+ +C
Sbjct: 571 FCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALC 607
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 42/218 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
++ M D L + +++I+ F K G +D A E+ + ++ +N+L + +
Sbjct: 409 LKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSK 468
Query: 112 M-------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
+ + G +PD T T L+N C + ++ +A + E+++ G P
Sbjct: 469 LGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHT 528
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------------ 190
V A ++NKM K G PD +FN+ I + C+ +
Sbjct: 529 YNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAML 588
Query: 191 -LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
LG+ D T I A+ E IDEA +L + G
Sbjct: 589 RLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSG 626
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---------- 111
V + L +I +G+ GL A EVF + + +YN+L V VR
Sbjct: 139 VSEELLRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLR 198
Query: 112 ---MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
M G PD T+ LV+ C G + EA ++++ G P V + +V+
Sbjct: 199 FQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCN 258
Query: 169 QGSVPD-LETFNSLIE 183
G D + F+++ E
Sbjct: 259 AGRPEDAVHVFDTMKE 274
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------FVRMIRK----GFVPDKR 122
+ G +D A F + A CQ YN+L VC +R++R+ G P+
Sbjct: 188 RAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVF 247
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
T+T+LV+ +C++G+ +A + +KG +P S + +V+ +
Sbjct: 248 TYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFR 293
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 109/279 (39%), Gaps = 71/279 (25%)
Query: 46 LSMWKTIELMK--PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC-TAFNCQQCVLLY 102
L +KT+ K PD + T +++++ K G ++ A ++F T+ C V+ Y
Sbjct: 85 LGYFKTVAGTKCTPDII-----TFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTY 139
Query: 103 NSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
++ + M G P+ T+++LV C +G+ + LQE++
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR 199
Query: 150 KGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKS----- 188
+GF P V A ++V MI+ G P + T+NSL+E C+S
Sbjct: 200 RGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDR 259
Query: 189 --------GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD-- 238
E G DV I + ++ +D+A LL +V + P + +
Sbjct: 260 AFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMV--AARCVPDVITYSTI 317
Query: 239 ----------------DAFCFFSEMQIKTH-PPNRPVYA 260
+A C EM +T PPN YA
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYA 356
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 42/209 (20%)
Query: 93 FNCQQCVLLYNSLHVCFVRMIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
NC +L+ H V++ R+ VP++ T+ L++ C +GK+ +A E L E+ D+G
Sbjct: 1 MNCALNLLVRAGQHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRG 60
Query: 152 FNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSGEL---- 191
P V ++ + K G PD+ TFN L++ + KSG +
Sbjct: 61 IPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120
Query: 192 ---------GLC-ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPS 233
C +V T I + K+ +D A LL + E G L
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180
Query: 234 L---GQFDDAFCFFSEMQIKTHPPNRPVY 259
L G+ D F EM + P+ +Y
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMY 209
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
+ +K +M P + +I+ K G +D AV VF + + + V YNS+
Sbjct: 405 AAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVL 463
Query: 106 -HVCFVR-----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+C V MI K PD ++ L+ C + EA E Q + KGF
Sbjct: 464 DGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFA 523
Query: 154 PPVRSAKQMVNKMIKQGSVPDLETF-NSLIET 184
V +VN++ K+ + D N LIE
Sbjct: 524 MEVGVYNVLVNELCKKKRLSDAHGVANKLIEA 555
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 48/231 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + ++E F + +D A + + C V+ YN++ R M
Sbjct: 243 TYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQM 302
Query: 113 IRKGFVPDKRTHTILVNAWC------SSGKMREAQEFLQELSDKGFNP------------ 154
+ VPD T++ +++ C + K+ A E L+ + G P
Sbjct: 303 VAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGL 362
Query: 155 -PVRSAKQ---MVNKMIKQGSVPDLETFNSLIETICKSGEL-------GLCA--DVNTNK 201
R ++Q ++ +MI VPDL +F+ +I ++CKS +L G+ + + N
Sbjct: 363 CRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNP 422
Query: 202 IS----IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
++ I +SK +D+A R+ +VE + D C ++
Sbjct: 423 VAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIE 473
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 28/207 (13%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTI 126
+D A+E+ C V+ YNSL F R M +G PD +
Sbjct: 222 LDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNT 281
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++ C ++ +AQ L+++ P V + +++ + K V + E +
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILE 341
Query: 187 KSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQF--------- 237
+ G + T + I + + +A LL +++ ++ P L F
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID--SEVVPDLSSFSMVIGSLCK 399
Query: 238 ----DDAFCFFSEMQIKTHPPNRPVYA 260
D A+ F M + PN YA
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYA 426
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 60/254 (23%)
Query: 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122
F + S+I E K + D + ++K C + ++ + F M VPD
Sbjct: 461 FEKAYSIIREMMSKGFIPDTST--YSKVIGLLCNASKV--DNAFLLFEEMKSNHVVPDVF 516
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKM 166
T+TIL++++C G +++A+++ E+ G P V SA ++ M
Sbjct: 517 TYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMM 576
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNT---NKISIPAVSKEFMIDEA------- 216
+ +G +P++ T+ +LI+ CKSG++ + IP V F ID+
Sbjct: 577 LSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNI 636
Query: 217 --FRLLCNLVEDGHKL----------------------------FPSLGQFDDAFCFFSE 246
+ L + + HK+ F +G+ D+A F++
Sbjct: 637 FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696
Query: 247 MQIKTHPPNRPVYA 260
M + + PN Y+
Sbjct: 697 MSERGYGPNVYTYS 710
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 53/201 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ FGK G +D +E+ + A KG P+ T+
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGA----------------------KGCAPNFVTYR 815
Query: 126 ILVNAWCSSGKMREAQEFLQELSD--------------KGFNPPVRSAKQMVNKMIKQGS 171
+L+N C++G + +A + L E+ +GFN + +++++ + +
Sbjct: 816 VLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVA 875
Query: 172 VPDLETFNSLIETICKSGELGL---------------CADVNTNKISIPAVSKEFMIDEA 216
VP + + LI++ CK+G L L AD + I ++S +D+A
Sbjct: 876 VPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKA 935
Query: 217 FRLLCNLVEDGHKLFPSLGQF 237
F L ++++ G P L F
Sbjct: 936 FELYADMIKRGG--IPELSIF 954
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +G P+ + L++ +C GK+ EAQ ++S++G+ P V + +++++ K
Sbjct: 662 MSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKR 721
Query: 172 VP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-H- 228
+ L+ + ++E C +V I + K DEA+RL+ + E G H
Sbjct: 722 LDLALKVLSRMLENSCA-------PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774
Query: 229 ---------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F G+ D +M K PN Y
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTY 814
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ F K G +D A VF K + V Y+SL RM+
Sbjct: 677 LIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P+ +T +++ C GK EA + + +KG +P V + M++ K G V
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV---- 792
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ +E + + G G + T ++ I ++D+A +LL
Sbjct: 793 --DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLL 834
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
F D +T +++ C + EA +FL + P V + K
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCK 354
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGE 190
++++ MI +G P FNSLI C+SG+
Sbjct: 355 RILSMMITEGCYPSRRIFNSLIHAYCRSGD 384
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 35/157 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------------FV 110
+I + + G A ++ K CQ ++YN L +C +
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
M+ V +K + L C +GK +A ++E+ KGF P + +++
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNAS 494
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGEL 191
+M VPD+ T+ LI++ CK G L
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLL 531
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 44/214 (20%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRMI 113
S +++ K G + A E+ + + V+ Y +L F M+
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 337
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
RKGF PD ++T L+N +C K+ +A +E+ K + P ++
Sbjct: 338 RKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQ 397
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
A + ++M+ +G +PDL T++ L++++CK+ L L D+ I I
Sbjct: 398 DAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIII 457
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD 238
+ + ++ A L NL G L PS+ ++
Sbjct: 458 DGMCRAGELEAARDLFSNLSSKG--LHPSVWTYN 489
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++++ G PD T T L+ C GK+ EA ++ D+GF P V + ++N + K
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 182
Query: 169 QGSV----------------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
G+ PD+ + S+I+++CK ++ ++ + + F
Sbjct: 183 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 242
Query: 213 IDEAFRLLCNLVEDGH 228
LCNL E H
Sbjct: 243 YTSLVHALCNLCEWKH 258
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 53/248 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +I K G A+ + NCQ V++Y S+ +C F +M
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
+ +G PD T+T LV+A C+ + + L ++ + P V
Sbjct: 232 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 291
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
A ++V+ MI++G PD+ T+ +L++ C E+ G DV +
Sbjct: 292 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTL 351
Query: 204 IPAVSKEFMIDEAFRLLCNLVED----GHKLFPSL-------GQFDDAFCFFSEMQIKTH 252
I K ID+A L + K + +L G+ DA F EM +
Sbjct: 352 INGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQ 411
Query: 253 PPNRPVYA 260
P+ Y+
Sbjct: 412 MPDLVTYS 419
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 40 LTLISELSMWKTIELM--KPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNC 95
LT I+++ + T+ + + DS V P TL+++I F + A V K
Sbjct: 72 LTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGH 131
Query: 96 QQ------------CV--LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
Q CV + +LH+ F +MI +GF P+ T+ L+N C G A
Sbjct: 132 QPDPTTFTTLIRGLCVEGKIGEALHL-FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 190
Query: 142 EFLQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
L+ + P V A + ++M+ QG PD+ T+ SL+ +
Sbjct: 191 RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 250
Query: 186 CKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
C E + DV + A+ KE + EA ++ +++ G + P
Sbjct: 251 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE--P 308
Query: 233 SLGQFD---DAFCFFSEM 247
+ + D C SEM
Sbjct: 309 DVVTYTTLMDGHCLQSEM 326
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
PD + + I+++ C +G++ A++ LS KG +P V + M++ + K+G +
Sbjct: 448 PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 507
Query: 173 ----------PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
PD T+N++ ++ E + ++ +++ F D F +L
Sbjct: 508 FMEMDGNDCSPDGCTYNTIARGFLQNNE-----TLRAIQLLEEMLARGFSADSCFLMLSV 562
Query: 223 LVEDGHKLF 231
L ED + F
Sbjct: 563 LSEDDRRYF 571
>gi|399107188|gb|AFP20358.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 10 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 47
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 48 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 107
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 108 ALDYFQT-----CRFN--GXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 160
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ B+A F M+
Sbjct: 161 CYNALIDALTKHGKVBEAMTLFKRME 186
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 107/266 (40%), Gaps = 45/266 (16%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDN 82
N+V ++ +R N+ + ++ ++PDS T +I K G ++
Sbjct: 261 NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY-----TYGSLISGMCKEGRLEE 315
Query: 83 AVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RMIRKGFVPDKRTHTILVN 129
A +F+K + YN+L + M++KG +P T+ +LV+
Sbjct: 316 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 375
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVP 173
A G+M EA + ++E+ KG P + A + N+M+ +G P
Sbjct: 376 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 435
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
T+ SLI + + + D+ KI VS + ++ N + DGH +
Sbjct: 436 THVTYTSLIYVLSRRNRMKEADDL-FEKILDQGVSPDV-------IMFNAMVDGH---CA 484
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVY 259
G + AF EM K+ PP+ +
Sbjct: 485 NGNVERAFMLLKEMDRKSVPPDEVTF 510
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 27/169 (15%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------- 158
V + M R T I+VN C GK+++A+EF+ + GF P V S
Sbjct: 213 VLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY 272
Query: 159 --------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
A+++++ M +G PD T+ SLI +CK G L + + + I V
Sbjct: 273 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA 332
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ CN G + AF + EM K P+ Y
Sbjct: 333 VTYNTLIDGYCN-----------KGDLERAFSYRDEMVKKGIMPSVSTY 370
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M RK PD+ T L+ C GK+ EA+ L E+ +G P
Sbjct: 498 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGD 557
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---NTNKISIPAVSKEFM 212
++ A ++ ++M+ G P L T+N+LI+ +CK+ E L ++ NK P S
Sbjct: 558 IKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLS 617
Query: 213 IDEAFRLLCNLVED 226
+ E + LVED
Sbjct: 618 LIEGMGNVDTLVED 631
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 34/165 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+KPD T + II K G++D A E+ + V+ YN L
Sbjct: 259 LKPDMF-----TYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGK 313
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
+M + P+ T++IL+ C GK+ EA L+ + +KG P S
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A + + MI G +PD+ +N+++ T+CK+G+
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 38/135 (28%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RM K F PD T+ I++ + CS GK+ A + L +L P V +
Sbjct: 183 RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +++++M+ +G PD+ T+N++I +CK G M+D
Sbjct: 243 GVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG----------------------MVD 280
Query: 215 EAFRLLCNLVEDGHK 229
AF ++ NL G +
Sbjct: 281 RAFEMVRNLELKGSE 295
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 43/189 (22%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNS--------------LHVCFVRMIRKGFVPDK 121
K+G D A+E+F K C YN+ LH+ + M+ G PD+
Sbjct: 415 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM-ILEMMSNGIDPDE 473
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
T+ +++ C G + EA E L ++ F+P V A ++
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLES 533
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
M+ G P+ T+ LIE I +G ++ + + I A+S + +F+ L
Sbjct: 534 MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAIS-----EYSFKRL----- 583
Query: 226 DGHKLFPSL 234
H+ FP L
Sbjct: 584 --HRTFPLL 590
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 60/188 (31%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
++LMK L+ + +I F + G +D A+E
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET---------------------- 393
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MI G +PD + ++ C +GK +A E +L + G +P S
Sbjct: 394 MISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGD 453
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A M+ +M+ G PD T+NS+I +C+ G M+DE
Sbjct: 454 KIRALHMILEMMSNGIDPDEITYNSMISCLCREG----------------------MVDE 491
Query: 216 AFRLLCNL 223
AF LL ++
Sbjct: 492 AFELLVDM 499
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLET 177
PD + L+N +C ++ +A L + K F+P + M+ + +G + L+
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--- 234
N L+ C+ V T I I A E +DEA +L+ ++ G K P +
Sbjct: 216 LNQLLSDNCQ-------PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK--PDMFTY 266
Query: 235 ----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G D AF +++K P+ Y
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISY 301
>gi|413951889|gb|AFW84538.1| hypothetical protein ZEAMMB73_463361, partial [Zea mays]
Length = 423
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 53/232 (22%)
Query: 4 VAAAKTSKED-YFAAVNHIA------------NIVRHDIYAERTLNRLNLTLISELSMWK 50
V A + S+ D +FA+++H A NI+ + A ++R ++L S L
Sbjct: 171 VRARRYSEADAFFASLSHGACGRRLAPNLQTYNIILRSLCARGDVDR-AVSLFSSLRR-- 227
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HVCF 109
+ PD + T S ++ KH +DNA+++ ++ + Q + YN+L CF
Sbjct: 228 --RGVAPDRV-----TYSTLMSGLVKHDQLDNALDLLDEMPDYGVQADAVCYNALLSGCF 280
Query: 110 V------------RMIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP- 155
+++R G P+ T+ ++++ C G+ +EA E + P
Sbjct: 281 KTGMFEKAIKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMVANNHQPDT 340
Query: 156 ---------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
V SA ++ + M+K G V D+ +NSLI+ CK G G
Sbjct: 341 VTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVAVYNSLIKGFCKVGRTG 392
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 47/241 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+ELM+ +L +T + +I+ + K + A+ V NK V+ YNSL
Sbjct: 416 VELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
+ M +G VPD T+T ++++ C S ++ EA + L K P
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVM 534
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
V A M+ KM+ + +P+ TFN+LI +C G+L + +
Sbjct: 535 YTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMV 594
Query: 203 SI---PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
I P VS + + L+ L++D G FD A+ F +M P+ Y
Sbjct: 595 KIDLQPTVSTDTI------LIHRLLKD--------GDFDHAYRRFQQMLSSGTKPDAHTY 640
Query: 260 A 260
Sbjct: 641 T 641
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 52/221 (23%)
Query: 77 HGL-----IDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFV 118
HGL ID A+++F K +C V Y L +C M KG
Sbjct: 296 HGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIK 355
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
P+ T+T+L+++ CS K+ +A+E L ++ +KG P V + ++N K+G +
Sbjct: 356 PNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDV 415
Query: 173 ----------PDLETFNSLIETICKSG---ELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
P+ T+N LI+ CK +G+ + K+ V+ +ID R
Sbjct: 416 VELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR- 474
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G FD A+ S M + P+ Y
Sbjct: 475 --------------SGNFDSAYRLLSLMNDRGLVPDPWTYT 501
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 29/174 (16%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S ++ + LM L P T + +I+ K ++ A ++F+ + V++Y +L
Sbjct: 480 SAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALI 539
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H+ +M+ K +P+ T L++ C+ GK++EA +++
Sbjct: 540 DGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQ 599
Query: 154 PPVRSAKQMVNKMIKQ----------------GSVPDLETFNSLIETICKSGEL 191
P V + ++++++K G+ PD T+ + I+T C+ G L
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F +M+ G PD T+T + +C G++++A++ + ++ + G +P +
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGD 684
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETI-------CKSGELGLCADVNTNKISIP 205
SA ++ +M G P TF SLI+ + K GE G+C N + I
Sbjct: 685 LGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIV 744
Query: 206 AVSKEFMIDEA 216
E M++
Sbjct: 745 VELLEKMVEHG 755
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 31/153 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK-GFNPPV------------- 156
+M+ G P+ +++ L+ C G +R A++ + K G +P
Sbjct: 750 KMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKL 809
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTN 200
A ++V+ MI G +P LE+ LI + K GE G D
Sbjct: 810 EKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAW 869
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
KI I V K+ ++ EAF L N++E F S
Sbjct: 870 KIIIDGVGKQGLV-EAFYELFNVMEKNGCTFSS 901
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 52/189 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S +I F + G +D+A+E FN MI G PD ++
Sbjct: 436 TFSTVISAFCRLGRLDDAMEKFN----------------------HMIDTGVPPDTAVYS 473
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------VRSAKQMVNKMIK 168
L+ C+ + +A+E + ++ KG PP V K +V+ +I
Sbjct: 474 CLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIH 533
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G P+L TFNSL++ C G + G+ D+ T + K ID+
Sbjct: 534 TGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDD 593
Query: 216 AFRLLCNLV 224
A L +++
Sbjct: 594 ALTLFRDML 602
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 53/244 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+I+ F K G +D A ++F K V+ Y+SL +C +M+ G
Sbjct: 230 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 289
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
P+ T+ L++ + +SG +E+ +E+S P V + A+
Sbjct: 290 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 349
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ + M+ +G PD+ ++ +L+ +G + G+ D + I A
Sbjct: 350 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 409
Query: 208 SKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
++ M+D++ + ++ + G F LG+ DDA F+ M PP+
Sbjct: 410 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT 469
Query: 257 PVYA 260
VY+
Sbjct: 470 AVYS 473
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 66/262 (25%)
Query: 44 SELSMWKTIELMKPDSLSVFPQ-TLSLIIEEFG----------KHGLIDNAVEVFNKCTA 92
S MWK +S+ VF + + SL++ + G KHG I A ++F+
Sbjct: 305 STSGMWK-------ESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVL 357
Query: 93 FNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMRE 139
+ V+ Y +L F M+ +G VPD+ L+NA+ G M +
Sbjct: 358 KGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDK 417
Query: 140 AQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIE 183
+ ++++ +G NP + + A + N MI G PD ++ LI+
Sbjct: 418 SLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQ 477
Query: 184 TICKSGEL----GLCADVNTNKISIPAVS----------KEFMIDEAFRLLCNLVEDGHK 229
C +L L +D+ + I P + KE + E ++ ++ G +
Sbjct: 478 GQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQR 537
Query: 230 LFPSLGQFD---DAFCFFSEMQ 248
P+L F+ D +C M+
Sbjct: 538 --PNLITFNSLVDGYCLVGNMK 557
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 27/168 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+M++ G+ PD T + L+N +C S ++ +A + ++ + G+ P
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A +V++M+++G PDL T+ +++ +CK G++ L +S+ ++
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA-------LSLLKKMEKGK 253
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
I EA ++ N + DG DDA F+EM K P+ Y+
Sbjct: 254 I-EADVVIYNTIIDG---LCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 45/209 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++ K G ID A+ + K + V++YN++ +C F M
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG PD T++ L++ C+ G+ +A L ++ ++ NP V +
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG---------ELGLCADVNTNKISIPAV 207
A+++ ++MIK+ PD+ T++SLI C EL + D N ++ +
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
K F +A R VE+G +LF + Q
Sbjct: 405 IKGFC--KAKR-----VEEGMELFREMSQ 426
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I F + DNA VF + + +L YN L V F +
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
R PD T+ I++ C +GK+ + E LS KG +P V
Sbjct: 495 QRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSK 554
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A ++ KM + G +P+ T+N+LI + G+
Sbjct: 555 EEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 36/209 (17%)
Query: 16 AAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKP-DSLSVFP--QTLSLIIE 72
A N ++ +R D+ T N L L + I LM+ + + P +T + I++
Sbjct: 182 AHSNMVSRGIRPDV---STFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQ 238
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------------MIRKGFV 118
F + G +D A+ V + C + N L F + +R+GF
Sbjct: 239 GFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFF 298
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
PDK T +LVN +G ++ A E + + +GF+P + + A ++
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL 191
+N+MI++ P+ T+N++I T+CK ++
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQV 387
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T +++I+ G + A+ + + C + V+ YN+L F +M
Sbjct: 443 TYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQM 502
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------V 156
+G + T+ L++ C S ++ EA + + ++ +G P +
Sbjct: 503 ELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDI 562
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ A +V M G PD+ T+ +LI +CK+G +
Sbjct: 563 KKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRV 597
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 29/144 (20%)
Query: 83 AVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK-----------GFVPDKRTHTILVN 129
A+E++ + C YN L +CF +++ G + T+ L++
Sbjct: 425 AMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLID 484
Query: 130 AWCSSGKMREAQEFLQELSDKGFN----------------PPVRSAKQMVNKMIKQGSVP 173
+C + ++ EA+E ++ +G + V A Q++++MI +G P
Sbjct: 485 GFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRP 544
Query: 174 DLETFNSLIETICKSGELGLCADV 197
D T+NSL+ CK+G++ AD+
Sbjct: 545 DKFTYNSLLTYFCKAGDIKKAADI 568
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 44/221 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I K G +D AV+V N+ +C + YN++ + +
Sbjct: 338 TYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVL 397
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
KG +PD T+ L+ C S A E +E+ KG +P +
Sbjct: 398 TGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKL 457
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKIS 203
+ A ++ +M G ++ T+N+LI+ CK+ + G+ + T
Sbjct: 458 QEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTL 517
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFF 244
I + K ++EA +L+ ++ +G L P ++ +F
Sbjct: 518 IDGLCKSERVEEASQLMDQMIMEG--LRPDKFTYNSLLTYF 556
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 40/144 (27%)
Query: 63 FPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120
FP T ++++ K G + +A+EV + M+R+GF PD
Sbjct: 298 FPDKYTFNMLVNGLSKTGHVKHALEVMD----------------------MMLREGFDPD 335
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVN 164
T+ L++ C G++ EA + L ++ ++ +P V A ++
Sbjct: 336 IYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLAL 395
Query: 165 KMIKQGSVPDLETFNSLIETICKS 188
+ +G +PD+ T+NSLI+ +C S
Sbjct: 396 VLTGKGILPDVCTYNSLIQGLCLS 419
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 33/185 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K ++ A ++ ++ + YNSL F + M
Sbjct: 513 TYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTM 572
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS------- 158
G PD T+ L+ C +G++ A + L+ + KG +NP +++
Sbjct: 573 ASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRS 632
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICK-SGELGLCADVNTNKIS---IPAVSKEFM 212
A ++ +MI++ PD T+ + +C+ G +G D + +P S +M
Sbjct: 633 KEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYM 692
Query: 213 IDEAF 217
+ E
Sbjct: 693 LAEGL 697
>gi|260780548|gb|ACX50820.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 183
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 24 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVV 83
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ GL + I + K IDEA RL
Sbjct: 84 VNGLCKNGRVEEALDYFQT-----CQFN--GLAINSMFYSSLIDGLGKAGRIDEAERLFE 136
Query: 222 NLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+ E G F G+ D+A F M+
Sbjct: 137 EMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRME 174
>gi|341606829|gb|AEK83517.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
M + V P SL+I K G ++ VF MIR
Sbjct: 5 MDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFEN----------------------MIR 42
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
KG P+ +T+L++ + SG + +A L + D+GF P V + +VN + K G V +
Sbjct: 43 KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEE 102
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG------ 227
L+ F + C+ G + I + K IDEA RL + E G
Sbjct: 103 ALDYFQT-----CRFN--GXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSY 155
Query: 228 --HKLFPSL---GQFDDAFCFFSEMQ 248
+ L +L G+ B+A F M+
Sbjct: 156 CYNALIDALTKHGKVBEAMTLFKRME 181
>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 37/166 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF----------NKCTAFNCQQCVLLY---N 103
PDS T + I+ F K G++ A E+F + TA +L +
Sbjct: 406 PDSF-----TYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSD 460
Query: 104 SLHVCFV---RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
CF MI G +PD T+ ++ C +GK+ EA +FL+E+ +KG+ P +
Sbjct: 461 RTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYN 520
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A + +MI+ G VP + TFN LI + GE
Sbjct: 521 CFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGE 566
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 43/179 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK----------- 160
MI G PD T+ ++++C +G + EA E + + KG +AK
Sbjct: 399 MIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQ 458
Query: 161 --------QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+++ MI G +PD+ T+ +IE +C +G++ G D+ T
Sbjct: 459 SDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVT 518
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG-----H------KLFPSLGQFDDAFCFFSEM 247
+ + + +EA L ++E G H +F +G+ D AF + EM
Sbjct: 519 YNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEM 577
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 32/134 (23%)
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV----------------N 198
P R + ++ +MI+ G PD T+N+ I++ CK+G + ++
Sbjct: 389 PSRGMR-VLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAK 447
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFS 245
T I I A+ + +E F+L+ +++ G + P + G+ ++A+ F
Sbjct: 448 TYAIMILALVQSDRTEECFKLIKDMINSG--VLPDVSTYKQVIEGMCLAGKVEEAYKFLE 505
Query: 246 EMQIKTHPPNRPVY 259
EM K + P+ Y
Sbjct: 506 EMGNKGYRPDIVTY 519
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 41/207 (19%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
KPD +S + II G G +D A ++F++ + C + YN+L +C
Sbjct: 276 KPDVVSY-----TTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNV 330
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
F MIRK ++P+ T+T+L+ C GK+ A + ++ + ++G P V++ +
Sbjct: 331 EDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVL 390
Query: 163 VNKMIKQGS-----------------VPDLETFNSLIETIC---KSGELGLCADVNTNKI 202
+ ++G +P+ +T+N +I + ++ ++ + A + +
Sbjct: 391 IRYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAEDMAIAARMVMEMV 450
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK 229
+ + FM++ R+L L+ G++
Sbjct: 451 ERGYLPRRFMLN---RVLNGLMLTGNQ 474
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 28/226 (12%)
Query: 60 LSVFPQTLSLIIEEFG-KHGLIDNAVEVFNKC-TAFNCQQCVLLYNSL------------ 105
L P+T ++ E F D AV +F + Q + L+NSL
Sbjct: 129 LPFTPRTFPILFERFAASQRRPDIAVRLFLSLHRSHRVAQDLPLFNSLLDALGKSRHASK 188
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
VR + + F PD T+ L + WC A + L+++++ G P + ++
Sbjct: 189 AASLVRALERRFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKG 248
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLC-ADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ G + +N ++ + + C DV + I + +D+A +L +
Sbjct: 249 FFRAGQLQ--HAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMS 306
Query: 225 EDG-----------HKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++G ++ G +DA F +M K + PN Y
Sbjct: 307 KEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTY 352
>gi|255685732|gb|ACU28355.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+ F MIRKG P+ +T+L++ + +G + +A L + D+GFNP V + +VN
Sbjct: 6 YAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNG 65
Query: 166 MIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ K G V + L+ F + C+ GL + I + K +D A RL +
Sbjct: 66 LCKNGRVEEALDYFQT-----CRFN--GLAINSMFYSSLIDGLGKAGRVDXAERLFEEMS 118
Query: 225 EDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
E G F G+ D+A F M+
Sbjct: 119 EKGCTRDSYCYNALIDAFTKHGKVDEALALFKRME 153
>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 45/234 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------ 107
M+PD Q L+++++ F K G + A V V YNSL H+
Sbjct: 283 MRPD-----LQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNK 337
Query: 108 ------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
F M+ +G +PD T L++ WC + +A L+E+S GF P V +
Sbjct: 338 MNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTT 397
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
AK++ M K G VP+L+T +++ +CK L + +S+
Sbjct: 398 LIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLL-------SEAVSLA 450
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ +D ++ +++ DG S G+ + A+ FS + K N +Y
Sbjct: 451 KAMEKSNLDLNI-VIYSILLDG---MCSAGKLNAAWELFSSLPGKGLQINVYIY 500
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 100 LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----- 154
L+ +L++C M KG P+ T+ L+ C+ G+ +EA L E+ G P
Sbjct: 232 LVSEALNLC-SEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQML 290
Query: 155 -----------PVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
V AK ++ MI G PD+ T+NSLI C
Sbjct: 291 NILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYC 333
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M + GFVPD T T L+ +C +G+ A+E + G P +++ +++ + K+
Sbjct: 383 MSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENL 442
Query: 172 VPD----------------LETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+ + + ++ L++ +C +G+L GL +V I
Sbjct: 443 LSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTI 502
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I + K+ +D+A LL N+ E+G
Sbjct: 503 MIKGLCKQGSLDKAEDLLINMEENG 527
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 57/250 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----------FVR-M 112
T + ++ F K G + + A Q V+ YN L +C VR M
Sbjct: 12 TFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71
Query: 113 IRKGF--VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------RSA 159
I +G PD T++ L++ +C +GK+ E++E L+E+ +G P +SA
Sbjct: 72 ISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSA 131
Query: 160 K-----QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ +++ +MI+ G P L TFN+LI C+ L G+ ADV T
Sbjct: 132 RLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYN 191
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQI 249
+ + K + EA +LL + G + L S G+ +A +M+
Sbjct: 192 TLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKS-GKVLNAHQVLEQMRD 250
Query: 250 KTHPPNRPVY 259
H PN Y
Sbjct: 251 SDHDPNVVTY 260
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 35/161 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNK-CTAFNCQQCVLLYNSL--HVCFV-----------R 111
T + I++ K G ID A+E+ + ++ C V+ Y+++ +C +
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M R G PD T++ LVN C +GK+ EA E ++E++ +G P
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378
Query: 156 VRSAKQMVNKMIKQGSV-----PDLETFNSLIETICKSGEL 191
+ A++MV +M G P + T+N+LI +CK+G +
Sbjct: 379 LAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRI 419
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M G D T+ L++ C +G+++EA++ L+ + G P V + V + K G
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237
Query: 172 V----------------PDLETFNSLIETICKSGEL 191
V P++ T+N++++ +CKSG++
Sbjct: 238 VLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKI 273
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M R G P+ T LVN + G+ + + L+ ++ +G P V S
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60
Query: 159 ---AKQMVNKMIKQG--SVPDLETFNSLIETICKSGEL 191
A+++V MI +G S PDL T+++L+ CK+G++
Sbjct: 61 WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKV 98
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM G PD ++ V C SGK+ A + L+++ D +P V + +++ + K G
Sbjct: 212 RMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSG 271
Query: 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK- 229
+ +T ++E + S GL +V + + K EA ++ + G +
Sbjct: 272 KI---DTALEMMEQMASSDGCGL--NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRP 326
Query: 230 ---LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ SL G+ ++A EM ++ PN Y
Sbjct: 327 DVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 34/156 (21%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------HVCFVR-MIR 114
S +++ K G A V C+ V+ Y+SL V VR M
Sbjct: 297 STVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAM 356
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----PP--------------- 155
+G P+ T+ LV+ CS G++ EA+ ++E+S G PP
Sbjct: 357 EGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKA 416
Query: 156 --VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A + +M QG PD ++++++E + +SG
Sbjct: 417 GRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSG 452
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 16/94 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
MI++GF+PD T T+++ A C +G + A + +++ D GF P
Sbjct: 243 MIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGS 302
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
++ A +M+ +M++ G P++ T +LI+ +CK G
Sbjct: 303 IKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRG 336
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F RM +G P+ T+T L+N C +G A E + + D+GF P + +
Sbjct: 375 NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAA 434
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
++ + K+ P+ E + K+ GL AD T I I K+ I++A C
Sbjct: 435 IDSLCKKSRAPE------AYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCR 488
Query: 223 LVEDG 227
+ + G
Sbjct: 489 MNKTG 493
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 32/132 (24%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F RM + GF D R + IL+ A+C KM+E++ Q ++
Sbjct: 486 FCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQ-------------------LVVS 526
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G +P ET+ S+I CK G++ G D T I + K+ M+DE
Sbjct: 527 LGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDE 586
Query: 216 AFRLLCNLVEDG 227
A +L +++ G
Sbjct: 587 ACKLYEAMIDRG 598
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 32/135 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+E K I+ A+ F + + + L N L F R +
Sbjct: 465 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 524
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G +P K T+T +++ +C G + A ++ M + G V
Sbjct: 525 VSLGLIPTKETYTSMISCYCKEGDIDLALKYFH-------------------NMKRHGCV 565
Query: 173 PDLETFNSLIETICK 187
PD T+ SLI +CK
Sbjct: 566 PDSFTYGSLISGLCK 580
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 37/152 (24%)
Query: 59 SLSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116
SL + P +T + +I + K G ID A++ F+ M R G
Sbjct: 526 SLGLIPTKETYTSMISCYCKEGDIDLALKYFHN----------------------MKRHG 563
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-- 174
VPD T+ L++ C + EA + + + D+G +PP + + + K+ +
Sbjct: 564 CVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAM 623
Query: 175 -----------LETFNSLIETICKSGELGLCA 195
+ T +L+ +C ++G+ A
Sbjct: 624 ILLEPLDKKLWIRTVRTLVRKLCSEKKVGVAA 655
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 30/192 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+I+E + G + + ++K F C + + F M G PD T+TIL++
Sbjct: 444 LIKEMMRKGFVPD-TSTYSKVITFLCHATKV--EKAFLLFQEMKMVGVTPDVYTYTILID 500
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
++C +G + +AQ +E+ G +P V + A + ++M+ G P
Sbjct: 501 SFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP 560
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
+ T+ +L++ +CK+G + +V I + D F C ED H L P+
Sbjct: 561 NDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA-----DSDFYFPC---EDRHTLAPN 612
Query: 234 L---GQFDDAFC 242
+ G D C
Sbjct: 613 VVTYGALVDGLC 624
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G P+ + L++ +C +GK+ AQE +++ G+ P V + ++++M K G
Sbjct: 639 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGR 698
Query: 172 V----------------PDLETFNSLIETICKSGE 190
+ P++ T+ ++I+ +C+ GE
Sbjct: 699 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGE 733
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 41/214 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++ K G I A EV+ K + Y F R P+ T+
Sbjct: 564 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFY------FPCEDRHTLAPNVVTYG 617
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
LV+ C + K+ A E L + G P + SA+++ +M K
Sbjct: 618 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 677
Query: 170 GSVPDLETFNSLIETICKSGELGLCADVNT----NKISIPAVSKEFMIDEAFRLLCNLVE 225
G +P + T+ SLI+ + K G L L V + + + V+ MID R
Sbjct: 678 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR------- 730
Query: 226 DGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+G+ + A S M+ K PN Y
Sbjct: 731 --------IGESEKALKLLSLMEEKGCSPNVVTY 756
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 30/203 (14%)
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRMIRKGFVPDKRT 123
HG ++ ++F + CQ + L N+ C F + GF+PD R+
Sbjct: 2 HGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRS 61
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIE 183
++IL++ +G+ RE + +GF R+ +V+ K G V + + +L E
Sbjct: 62 YSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVD--KAYEALEE 119
Query: 184 TICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-----------FP 232
K + V T I ++K +DEA+ L G +L F
Sbjct: 120 MKVKH----VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFG 175
Query: 233 SLGQFDDAFCFFSEMQIKTHPPN 255
+G+ D+A+ EM K PN
Sbjct: 176 KVGRIDEAYLILEEMMKKGLAPN 198
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 29/147 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRMIR 114
S +I+ FGK G ID A + + V +NSL +CF M
Sbjct: 168 SSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKE 227
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK------ 168
P+ T++IL+N C K +A F QE+ +G P V + M++ + K
Sbjct: 228 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITD 287
Query: 169 ----------QGSVPDLETFNSLIETI 185
G +PD +FN+LIE +
Sbjct: 288 ACSLFERFKANGGIPDAASFNALIEGM 314
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 70/206 (33%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M ++GF D R + +V+ +C SGK+ +A E L+E+ K P V + +++
Sbjct: 82 FHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAK 141
Query: 165 -----------------------------------------------KMIKQGSVPDLET 177
+M+K+G P++ T
Sbjct: 142 IDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYT 201
Query: 178 FNSLIETICKSGELG---LC-ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
+NSL++ + K+ E+ +C + K S + +I+ LC +
Sbjct: 202 WNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILING----LCRVQ--------- 248
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVY 259
+++ AF F+ EMQ + PN Y
Sbjct: 249 --KYNKAFVFWQEMQKQGLVPNVVTY 272
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 41/231 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------- 106
M+ D + L L++ + + G +D+A N+ + + +YN+L
Sbjct: 135 MRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNL 194
Query: 107 -----VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ F + FVPD + IL+ C G++ +A EF Q + + G P + S
Sbjct: 195 VDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNT 254
Query: 162 MVN-----------------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISI 204
++N M+ +G PD+ T+ S+I CK G++ +++ +S
Sbjct: 255 LINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+F N++ DG F +G A + +M + P+
Sbjct: 315 GIKPNDFTF--------NVLIDG---FGKVGNMRSAMVMYEKMLLLGCLPD 354
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+ FGK G + +A+ ++ K C V+ + SL + R M
Sbjct: 322 TFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEM 381
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP---------PV 156
+ P+ T+ +L+NA C ++REA+ FL+ L +NP V
Sbjct: 382 KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKV 441
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +V +M ++ PD TF LI C G + I I V E I+
Sbjct: 442 DEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITIN 499
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 99 VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
V L +S + F M G +PD +LV+++ GK+ A+ FL E+ G
Sbjct: 122 VGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFV 181
Query: 159 AKQMVNKMIKQG----------------SVPDLETFNSLIETICKSGEL 191
++N ++KQ VPD+ +FN LI +C+ GE+
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 43 ISELSMWKTIELMKPDSL--SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
++E+S K +L+K D L V P T + II + K G + A E+F++ + +
Sbjct: 262 VNEIS--KGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPN 319
Query: 99 VLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+N L V + +M+ G +PD T T L++ +C G++ + + +
Sbjct: 320 DFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWE 379
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSG 189
E+ + +P V + ++N + K+ VP +N +I+ CK+G
Sbjct: 380 EMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAG 439
Query: 190 EL 191
++
Sbjct: 440 KV 441
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 97/238 (40%), Gaps = 30/238 (12%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M +LM D ++ T +++I+ + G++D A+ +FN+ + V+ Y ++
Sbjct: 376 VDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 435
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R MI +G PDK + L+ +C+ G + +A+E + E+ + G
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 495
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
+ + ++N + K G V D + L + GL + +
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNV------GLHPTAVVYSMLMDGYCLVGK 549
Query: 213 IDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+++A R+ +V G + + +G+ D+ F EM K P+ +Y
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 607
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M R +PD T ++L+ + C GK++EA++ ++ KG NP V S M+N
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYAT 371
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+G + D+ L+ G+ G+ D+ T + I A + M+D+A + + + G
Sbjct: 372 KGCLVDMTDLFDLM-----LGD-GIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 425
Query: 229 K-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
K +G+ DDA F++M + P++ Y
Sbjct: 426 KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 37/165 (22%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCT----------------AFNCQQCVLLY 102
S+ P TLS+++ K+G I A +VF+ + + C++
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDM 378
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
L F M+ G PD T +L+ A+ + G + +A E+ D G P V + + +
Sbjct: 379 TDL---FDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 435
Query: 163 V----------------NKMIKQGSVPDLETFNSLIETICKSGEL 191
+ N+MI QG PD ++ LI+ C G L
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+++G PD T++ +V+A C + M +A+ FL+++ +KG P
Sbjct: 242 FKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSS 301
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+ A ++ +M + +PD+ T + L+ ++CK G++ DV
Sbjct: 302 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 346
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 104 SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF--NPPVRSAKQ 161
+L + R G VPD +++IL+ + C GK +A + L+ +++ G +P V +
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYST 224
Query: 162 MVNKMIKQGSV----------------PDLETFNSLIETICKS 188
+++ K+G V PD T++S++ +CK+
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKA 267
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRM 112
T ++++ K+ D A+ +F + A N + ++ N++ F +
Sbjct: 641 TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASI 700
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G VP T++I++ G + EA++ + + G P R +V +++K+ +
Sbjct: 701 SRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEI 760
Query: 173 PDLETFNSLIE 183
+ S I+
Sbjct: 761 VRAGAYLSKID 771
>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1010
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 37/148 (25%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD++ T + +I+ FGK G +D+ V F + C+ V+ YN+L CF +
Sbjct: 128 PDTV-----TYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 182
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
M R G P+ +++ LV+A+C G M++A +F +
Sbjct: 183 KGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVD----------------- 225
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL 191
M + G VP+ T+ SLI+ CK G L
Sbjct: 226 --MRRVGLVPNEYTYTSLIDAYCKIGNL 251
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 38/156 (24%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
CF +M R P R+ L++ + GK + F ++ MI
Sbjct: 47 CFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKD-------------------MI 87
Query: 168 KQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
G+ P + T+N +I+ +CK G++ GL ++ + V+ MID
Sbjct: 88 GAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDG-------- 139
Query: 224 VEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F +G+ DD CFF EM+ P+ Y
Sbjct: 140 -------FGKVGRLDDTVCFFEEMKDMCCEPDVITY 168
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 106/267 (39%), Gaps = 53/267 (19%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
L+ E M+ L T + +I +G +D A+ +++K + ++ +N+L
Sbjct: 290 LAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNAL 349
Query: 106 --HVCFVRMIRKG-----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
C +MI++ VP+ T +++A+C +G M E + D+G
Sbjct: 350 INGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGI 409
Query: 153 ----------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------ 190
N VR+AK+++N+M D+ T+N LI CK GE
Sbjct: 410 FPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEK 469
Query: 191 -LG--LCADVNTNKIS----IPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFP 232
LG L V N ++ + E + A ++ + ++G K F
Sbjct: 470 LLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFC 529
Query: 233 SLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ +DA +EM K PNR Y
Sbjct: 530 KTGKLEDANRLLNEMLEKGLNPNRTTY 556
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 37/173 (21%)
Query: 105 LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
+ + MI++ P+ T I +N C +GK+ +A++ ++++ GF+P + + +++
Sbjct: 184 MQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLID 243
Query: 165 KMIKQGSV-------------------PDLETFNSLIETICKSGEL-------------G 192
K+GS P+ TFN+LI+ CK + G
Sbjct: 244 GHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQG 303
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFC 242
L ++ T I +S +DEA L +V G L P++ F+ + FC
Sbjct: 304 LKPNIVTYNSLINGLSNNGKLDEAIALWDKMV--GLGLKPNIVTFNALINGFC 354
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 40/66 (60%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+M ++G + T+ +L+ +C +GK+ +A L E+ +KG NP + + +M+++G
Sbjct: 508 QMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKG 567
Query: 171 SVPDLE 176
+PD+E
Sbjct: 568 FIPDIE 573
>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 529
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 113/277 (40%), Gaps = 78/277 (28%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV 110
+L++PD + + II+ K L+++A ++ + A V+ YN+L +C +
Sbjct: 146 KLVQPDVV-----MYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIM 200
Query: 111 -----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---- 155
+MI + P T +IL++A+C GKM+EA+ + + P
Sbjct: 201 AQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTY 260
Query: 156 ------------VRSAKQMVNKMIK--------------QGSVPDLETFNSLIETICKSG 189
V+ AK + N MIK + PD+ +NSLI+ +CKSG
Sbjct: 261 NSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSG 320
Query: 190 EL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-- 234
G D+ T + A+ K + +D+A LL L + G + PS+
Sbjct: 321 RTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQG--IQPSVCT 378
Query: 235 -----------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
G+ DA F ++ +K + N VY
Sbjct: 379 YNILINGLCKSGRLKDAEKVFEDLLVKGY--NTDVYT 413
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +G PD T+ L++A C + + +A E L +L D+G P V + ++N + K G
Sbjct: 332 MHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGR 391
Query: 172 VPDLE-TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ D E F L+ G DV T I K+ + DE ++ + + G
Sbjct: 392 LKDAEKVFEDLLVK-------GYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSG 441
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+G P T+ IL+N C SG++++A++ ++L KG+N V + M+ K+G
Sbjct: 370 QGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKG---- 425
Query: 175 LETFNSLIETICKSGELGLCADVNTNKISIPAV 207
F+ + + K + G D +I I ++
Sbjct: 426 --LFDETLAMVSKMKDSGCSPDAKNCEIIIRSL 456
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 30/170 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +++KG+ D T T L+ C G++ +A F ++ +GF S ++N + K
Sbjct: 70 FANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCK 129
Query: 169 QGSV----------------PDLETFNSLIETICKSGELG-------------LCADVNT 199
G PD+ +N++I+ +CK + +C V T
Sbjct: 130 VGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVT 189
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLV-EDGHKLFPSLGQFDDAFCFFSEMQ 248
I + + +A LL ++ ED + + DAFC +M+
Sbjct: 190 YNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMK 239
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +++ K+ +D A+E+ K Q V YN L +C F +
Sbjct: 343 TYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDL 402
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG+ D T+ ++ +C G E + ++ D G +P ++ + ++ + +G
Sbjct: 403 LVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGEN 462
Query: 173 PDLETFNSLI 182
F +I
Sbjct: 463 DKAGKFREMI 472
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 62/234 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S II K +D A+EV N M++ G +P+ RT+
Sbjct: 229 TYSSIIAALCKAQAMDKAMEVLNT----------------------MVKNGVMPNCRTYN 266
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQ 169
+V+ +CSSG++ EA FL+ + G P V + A+++ N M K
Sbjct: 267 SIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKC 326
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G PD+ T+ +L++ G L G+ + + I I A +K+ +DEA
Sbjct: 327 GLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEA 386
Query: 217 FRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + + G + LG+ DA +M + P+ VY
Sbjct: 387 MLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVY 440
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--PPVRSAK 160
+++ + RM + G +P+ + TIL+ C + +EA E LQ + D G + P V
Sbjct: 137 DAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYN 196
Query: 161 QMVNKMIKQGSVPD--LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
++N K+G PD T++ + + G+ DV T I A+ K +D+A
Sbjct: 197 TVINGFFKEGD-PDKAYATYHEMFDQ-------GILPDVVTYSSIIAALCKAQAMDKAME 248
Query: 219 LLCNLVEDG 227
+L +V++G
Sbjct: 249 VLNTMVKNG 257
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 47/201 (23%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+KPD + + II+ K+G +DNA+ +FN+ M
Sbjct: 172 IKPDVV-----IYTTIIDSLCKNGHVDNALSLFNQ----------------------MEN 204
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
G PD +T LVN C+SG+ R+A L+ + + P V +
Sbjct: 205 YGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLD 264
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD---VNTNKISIPAVSKEFMIDE 215
AK++ N+MI+ P++ T+ SLI +C G L + K P V +
Sbjct: 265 AKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLIN 324
Query: 216 AFRLLCNLVEDGHKLFPSLGQ 236
F C VED K+F + Q
Sbjct: 325 GF-CKCKKVEDAMKIFYEMSQ 344
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 34/166 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC---- 108
+KPD + T + +I+ F K G + +A E++N+ + + Y SL +C
Sbjct: 242 IKPDVI-----TFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGR 296
Query: 109 -------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
F M KG PD +T L+N +C K+ +A + E+S KG +
Sbjct: 297 LDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTT 356
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A+++ M+ +G P++ T+N L+ +C +G++
Sbjct: 357 LIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKV 402
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
++++ GF PD T T L+N +C ++ EA + ++ + G P V +++ + K G
Sbjct: 131 KLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNG 190
Query: 171 SV----------------PDLETFNSLIETICKSGE 190
V PD+ + SL+ +C SG
Sbjct: 191 HVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGR 226
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSA 159
G D T +L+N +C S + A FL +L GF P + A
Sbjct: 101 GVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEA 160
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
MVN+M++ G PD+ + ++I+++CK+G +
Sbjct: 161 MSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHV 192
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
I E + GL N + F V N F M+ +G P+ RT+ +L++
Sbjct: 338 IFYEMSQKGLTGNTITYTTLIQGFGL---VGKPNVAQEVFGHMVSRGVPPNIRTYNVLLH 394
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
C +GK+ +A +++ + + G P++ T+N L+ +C +G
Sbjct: 395 CLCYNGKVNKALMIFEDMQKREID----------------GVPPNIRTYNVLLHGLCYNG 438
Query: 190 EL 191
+L
Sbjct: 439 KL 440
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 41/223 (18%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------- 106
M+ D + L L++ + + G +D+A N+ + + +YN+L
Sbjct: 135 MRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNL 194
Query: 107 -----VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ F + FVPD + IL+ C G++ +A EF Q + + G P + S
Sbjct: 195 VDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNT 254
Query: 162 MVN-----------------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISI 204
++N M+ +G PD+ T+ S+I CK G++ +++ +S
Sbjct: 255 LINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314
Query: 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+F N++ DG F +G A + +M
Sbjct: 315 GIKPNDFTF--------NVLIDG---FGKVGNMRSAMVMYEKM 346
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+ FGK G + +A+ ++ K C V+ + SL + R M
Sbjct: 322 TFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEM 381
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP---------PV 156
+ P+ T+ +L+NA C ++REA+ FL+ L +NP V
Sbjct: 382 KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKV 441
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +V +M ++ PD TF LI C G + I I V E I+
Sbjct: 442 DEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITIN 499
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 99 VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
V L +S + F M G +PD +LV+++ GK+ A+ FL E+ G
Sbjct: 122 VGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFV 181
Query: 159 AKQMVNKMIKQGS----------------VPDLETFNSLIETICKSGEL 191
++N ++KQ VPD+ +FN LI +C+ GE+
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 43 ISELSMWKTIELMKPDSL--SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
++E+S K +L+K D L V P T + II + K G + A E+F++ + +
Sbjct: 262 VNEIS--KGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPN 319
Query: 99 VLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145
+N L V + +M+ G +PD T T L++ +C G++ + + +
Sbjct: 320 DFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWE 379
Query: 146 ELSDKGFNPPVRSAKQMVNKMIKQGS----------------VPDLETFNSLIETICKSG 189
E+ + +P V + ++N + K+ VP +N +I+ CK+G
Sbjct: 380 EMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAG 439
Query: 190 EL 191
++
Sbjct: 440 KV 441
>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Vitis vinifera]
Length = 709
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 37/166 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF----------NKCTAFNCQQCVLLY---N 103
PDS T + I+ F K G++ A E+F + TA +L +
Sbjct: 442 PDSF-----TYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSD 496
Query: 104 SLHVCFV---RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
CF MI G +PD T+ ++ C +GK+ EA +FL+E+ +KG+ P +
Sbjct: 497 RTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYN 556
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A + +MI+ G VP + TFN LI + GE
Sbjct: 557 CFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGE 602
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 43/179 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK----------- 160
MI G PD T+ ++++C +G + EA E + + KG +AK
Sbjct: 435 MIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQ 494
Query: 161 --------QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+++ MI G +PD+ T+ +IE +C +G++ G D+ T
Sbjct: 495 SDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVT 554
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG-----H------KLFPSLGQFDDAFCFFSEM 247
+ + + +EA L ++E G H +F +G+ D AF + EM
Sbjct: 555 YNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEM 613
>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 598
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 30/162 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG------- 116
T+++++ + G ID A + N +F C V+ YN+L +C + + +
Sbjct: 178 TVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEV 237
Query: 117 -----FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
F PD ++T +++ +C KM E E+ G P
Sbjct: 238 CLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGD 297
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+ SA + KM+ QG VPD+ TF SLI + G++ D+
Sbjct: 298 MASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDM 339
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I FGK G + +A+ ++ K M+ +G VPD T T
Sbjct: 284 TFNALIGGFGKLGDMASALALYEK----------------------MLVQGCVPDVATFT 321
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVNKMIKQ 169
L+N + G++ +A + +++DK N + A+ ++ + +
Sbjct: 322 SLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNES 381
Query: 170 GSVPDLETFNSLIETICKSGEL 191
VP +N +I+ CKSG +
Sbjct: 382 DIVPQPFIYNPVIDGYCKSGNV 403
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 52/189 (27%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S +I F + G +D+A+E FN MI G PD ++
Sbjct: 365 TFSTVISAFCRLGRLDDAMEKFN----------------------HMIDTGVPPDTAVYS 402
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP-----------------VRSAKQMVNKMIK 168
L+ C+ + +A+E + ++ KG PP V K +V+ +I
Sbjct: 403 CLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIH 462
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G P+L TFNSL++ C G + G+ D+ T + K ID+
Sbjct: 463 TGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDD 522
Query: 216 AFRLLCNLV 224
A L +++
Sbjct: 523 ALTLFRDML 531
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 53/244 (21%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKG 116
+I+ F K G +D A ++F K V+ Y+SL +C +M+ G
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAK 160
P+ T+ L++ + +SG +E+ +E+S P V + A+
Sbjct: 219 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 278
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAV 207
+ + M+ +G PD+ ++ +L+ +G + G+ D + I A
Sbjct: 279 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 338
Query: 208 SKEFMIDEAFRLLCNLVEDGH-----------KLFPSLGQFDDAFCFFSEMQIKTHPPNR 256
++ M+D++ + ++ + G F LG+ DDA F+ M PP+
Sbjct: 339 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT 398
Query: 257 PVYA 260
VY+
Sbjct: 399 AVYS 402
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 66/262 (25%)
Query: 44 SELSMWKTIELMKPDSLSVFPQ-TLSLIIEEFG----------KHGLIDNAVEVFNKCTA 92
S MWK +S+ VF + + SL++ + G KHG I A ++F+
Sbjct: 234 STSGMWK-------ESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVL 286
Query: 93 FNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMRE 139
+ V+ Y +L F M+ +G VPD+ L+NA+ G M +
Sbjct: 287 KGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDK 346
Query: 140 AQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIE 183
+ ++++ +G NP + + A + N MI G PD ++ LI+
Sbjct: 347 SLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQ 406
Query: 184 TICKSGEL----GLCADVNTNKISIPAVS----------KEFMIDEAFRLLCNLVEDGHK 229
C +L L +D+ + I P + KE + E ++ ++ G +
Sbjct: 407 GQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQR 466
Query: 230 LFPSLGQFD---DAFCFFSEMQ 248
P+L F+ D +C M+
Sbjct: 467 --PNLITFNSLVDGYCLVGNMK 486
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 59/247 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
II E G I + ++K C + ++ + F M VPD T+TIL++
Sbjct: 467 IIREMMSKGFIPD-TSTYSKVIGLLCNASKV--DNAFLLFEEMKSNHVVPDVFTYTILID 523
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVP 173
++C G +++A+++ E+ G P V SA ++ M+ +G +P
Sbjct: 524 SFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIP 583
Query: 174 DLETFNSLIETICKSGELGLCADVNT---NKISIPAVSKEFMIDEA---------FRLLC 221
++ T+ +LI+ CKSG++ + IP V F ID+ + L
Sbjct: 584 NVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALV 643
Query: 222 NLVEDGHKL----------------------------FPSLGQFDDAFCFFSEMQIKTHP 253
+ + HK+ F +G+ D+A F++M + +
Sbjct: 644 DGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYG 703
Query: 254 PNRPVYA 260
PN Y+
Sbjct: 704 PNVYTYS 710
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 53/201 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ FGK G +D +E+ + A KG P+ T+
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGA----------------------KGCAPNFVTYR 815
Query: 126 ILVNAWCSSGKMREAQEFLQELSD--------------KGFNPPVRSAKQMVNKMIKQGS 171
+L+N C++G + +A + L E+ +GFN + +++++ + +
Sbjct: 816 VLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVA 875
Query: 172 VPDLETFNSLIETICKSGELGL---------------CADVNTNKISIPAVSKEFMIDEA 216
VP + + LI++ CK+G L L AD + I ++S +D+A
Sbjct: 876 VPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKA 935
Query: 217 FRLLCNLVEDGHKLFPSLGQF 237
F L ++++ G P L F
Sbjct: 936 FELYADMIKRGG--IPELSIF 954
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +G P+ + L++ +C GK+ EAQ ++S++G+ P V + +++++ K
Sbjct: 662 MSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKR 721
Query: 172 VP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-H- 228
+ L+ + ++E C +V I + K DEA+RL+ + E G H
Sbjct: 722 LDLALKVLSRMLENSCA-------PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774
Query: 229 ---------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F G+ D +M K PN Y
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTY 814
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ F K G +D A VF K + V Y+SL RM+
Sbjct: 677 LIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P+ +T +++ C GK EA + + +KG +P V + M++ K G V
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV---- 792
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ +E + + G G + T ++ I ++D+A +LL
Sbjct: 793 --DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLL 834
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
F D +T +++ C + EA +FL + P V + K
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCK 354
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGE 190
++++ MI +G P FNSLI C+SG+
Sbjct: 355 RILSMMITEGCYPSRRIFNSLIHAYCRSGD 384
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 35/157 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------------FV 110
+I + + G A ++ K CQ ++YN L +C +
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
M+ V +K + L C +GK +A ++E+ KGF P + +++
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNAS 494
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGEL 191
+M VPD+ T+ LI++ CK G L
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLL 531
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 107/266 (40%), Gaps = 45/266 (16%)
Query: 23 NIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDN 82
N+V ++ +R N+ + ++ ++PDS T +I K G ++
Sbjct: 283 NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSY-----TYGSLISGMCKEGRLEE 337
Query: 83 AVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RMIRKGFVPDKRTHTILVN 129
A +F+K + YN+L + M++KG +P T+ +LV+
Sbjct: 338 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 397
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSVP 173
A G+M EA + ++E+ KG P + A + N+M+ +G P
Sbjct: 398 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 457
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
T+ SLI + + + D+ KI VS + ++ N + DGH +
Sbjct: 458 THVTYTSLIYVLSRRNRMKEADDL-FEKILDQGVSPDV-------IMFNAMVDGH---CA 506
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVY 259
G + AF EM K+ PP+ +
Sbjct: 507 NGNVERAFMLLKEMDRKSVPPDEVTF 532
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 27/169 (15%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------- 158
V + M R T I+VN C GK+++A+EF+ + GF P V S
Sbjct: 235 VLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY 294
Query: 159 --------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
A+++++ M +G PD T+ SLI +CK G L + + + I V
Sbjct: 295 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA 354
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ CN G + AF + EM K P+ Y
Sbjct: 355 VTYNTLIDGYCN-----------KGDLERAFSYRDEMVKKGIMPSVSTY 392
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M RK PD+ T L+ C GK+ EA+ L E+ +G P
Sbjct: 520 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGD 579
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---NTNKISIPAVSKEFM 212
++ A ++ ++M+ G P L T+N+LI+ +CK+ E L ++ NK P S
Sbjct: 580 IKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLS 639
Query: 213 IDEAFRLLCNLVED 226
+ E + LVED
Sbjct: 640 LIEGMGNVDTLVED 653
>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------HVC-------FVRMIRKG 116
++ + K G ID+A VF++ + N V +N++ H C F+RM R+G
Sbjct: 345 LVHMYAKSGSIDDARLVFDQMSVRN----VFTWNAMIGGLAQHGCGQEAFSLFLRMRREG 400
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
VPD T+ ++NA S+G + +E ++ G + VR +V+ K GS+ D
Sbjct: 401 VVPDAITYMSILNASASTGALGWVKEVHRQAVQAGLDSDVRVGNALVHMYCKTGSISDAR 460
Query: 177 -TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
F+ ++E DV T I +++ EAF L + +G
Sbjct: 461 LMFDGMVER-----------DVITWTAMISGLAQNECGQEAFSLFLQMQREG 501
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 23/170 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH---------VCFVRMIRKGFVPD 120
++ + K G I +A VF++ N ++ L F++M +GFVPD
Sbjct: 141 LVNMYAKSGSIKDARLVFDEMAERNVITWNVMIGGLAQHGFGQEAFSLFLQMQEEGFVPD 200
Query: 121 KRTH-TILVNAWCSS-GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE-T 177
T+ +IL CSS G + +E + GF+ +R +V+ K GSV D
Sbjct: 201 STTYLSILTATACSSAGALGWVKEVHRHAVKAGFDSDMRVCNALVHVYSKSGSVDDARLV 260
Query: 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
F +++ DV + I +++ EAF L + +G
Sbjct: 261 FEGMLDR-----------DVISWSAMIGGLAQNGCGHEAFSLFLKMQREG 299
>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
Length = 708
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 37/166 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF----------NKCTAFNCQQCVLLY---N 103
PDS T + I+ F K G++ A E+F + TA +L +
Sbjct: 415 PDSF-----TYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSD 469
Query: 104 SLHVCFV---RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
CF MI G +PD T+ ++ C +GK+ EA +FL+E+ +KG+ P +
Sbjct: 470 RTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYN 529
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A + +MI+ G VP + TFN LI + GE
Sbjct: 530 CFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGE 575
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 43/179 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK----------- 160
MI G PD T+ ++++C +G + EA E + + KG +AK
Sbjct: 408 MIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQ 467
Query: 161 --------QMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+++ MI G +PD+ T+ +IE +C +G++ G D+ T
Sbjct: 468 SDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVT 527
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG-----H------KLFPSLGQFDDAFCFFSEM 247
+ + + +EA L ++E G H +F +G+ D AF + EM
Sbjct: 528 YNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEM 586
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RMI +G PD T+++L++A C ++ EA L ++S +G + +
Sbjct: 624 RMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 683
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
AK+M N+M G P T+ I + CK G L G+ DV T
Sbjct: 684 KHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 743
Query: 202 ISIPAVSKEFMIDEAFRLLCNLV 224
I I ID AF L +V
Sbjct: 744 ILIDGCGHMGYIDRAFSTLKRMV 766
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 108/297 (36%), Gaps = 93/297 (31%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMI 113
+MK D S + + +I K G + +A +F+ V+ YN++ V + ++
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337
Query: 114 R-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
R G PD T+ L+ C K EA+E L +GF P V
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFT 396
Query: 157 -----------------------------------------------RSAKQMVNKMIKQ 169
+ AK+++N++
Sbjct: 397 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 456
Query: 170 GSVPDLETFNSLIETICKSGELGLCADV-------------NTNKISIPAVSKEFMIDEA 216
G VP++ T+ S+I+ CKSG++ + +V T + + K+ + +A
Sbjct: 457 GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKA 516
Query: 217 FRLLCNLVEDGHKLFPSL--------GQ-----FDDAFCFFSEMQIKTHPPNRPVYA 260
LL + +DG + P++ GQ FD+AF F M+ P+ YA
Sbjct: 517 MALLTKMQKDG--IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYA 571
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 34/169 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL------------QELSDKGFNPPV 156
F M + G PD+ + +L +A C +G+ EA F+ L D GF+
Sbjct: 555 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLID-GFSKAG 613
Query: 157 RS--AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKE 210
+ A ++ +MI +G PD T++ L+ +CK L + ++ I +
Sbjct: 614 NTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYT 673
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+IDE R G+ D A ++EM H P+ Y
Sbjct: 674 ILIDEMLR---------------EGKHDHAKRMYNEMTSSGHKPSATTY 707
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 29/209 (13%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSM-WKTIELMKPDSLSVFPQTLSLII 71
+Y+ + ++++ ++ R+++ + + EL + W+ +E M L+ T S +I
Sbjct: 773 NYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLI 832
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAW 131
F K G ++ A C+LL H+C KG P++ +T+L+
Sbjct: 833 AGFCKAGRLEEA--------------CLLLD---HMC-----GKGLSPNEDIYTLLIKCC 870
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
C + +A F+ +S+ GF P + S + +V + +G D E SL C EL
Sbjct: 871 CDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEG---DFEKVKSL---FCDLLEL 924
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
G D KI + K +D F++L
Sbjct: 925 GYNHDEVAWKILNDGLLKAGYVDICFQML 953
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 43/197 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ-------------CVLLYNSLHVCFVRM 112
T S ++ F +HG +D + F + A C Y V
Sbjct: 230 TYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEE 289
Query: 113 IRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ-- 169
+R+ G VPD T+++L+N + +G+ + E L+++ G P V + ++N + K+
Sbjct: 290 LRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERK 349
Query: 170 --------------GSVPDLETFNSLIETICKSGEL------------GLCA-DVNTNKI 202
GS P++ T+NS+++ +CKSG++ C+ DV T I
Sbjct: 350 FQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSI 409
Query: 203 SIPAVSKEFMIDEAFRL 219
+ +SK M+D A +L
Sbjct: 410 IMNGLSKAGMLDSAVKL 426
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 46/209 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T L+++ G+ + A+E+ + + V +YN + R M
Sbjct: 56 TYKLVVDGLCGAGMANQALELVRELSGVYTPT-VFIYNGIITGLCRASRVMDAYKVLEKM 114
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-PVRSAKQMVNKMIKQGS 171
+ + VP+ T+TIL+N C S K + A+E QE+ G P P+
Sbjct: 115 VEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPI--------------- 159
Query: 172 VPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231
T+ +LI+ + ++GE+ ++ I S E D + C + G
Sbjct: 160 -----TYGTLIQHLSRAGEID-----EALRVMIEQRSLELPTDV---ITCTTIVGG---L 203
Query: 232 PSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ DDA F EM+ PN Y+
Sbjct: 204 CKASRLDDALKFMEEMRQMGVRPNEVTYS 232
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 49/239 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK------------CTAFNCQQCVLLY 102
MK + P T +I+ + G ID A+ V + CT C
Sbjct: 149 MKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASR 208
Query: 103 NSLHVCFVRMIRK-GFVPDKRTHTILVNAWCSSGKM-REAQEFLQELSDKGFNPPVRS-- 158
+ F+ +R+ G P++ T++ LV+ + G++ R + F +E + KG + +
Sbjct: 209 LDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYP 268
Query: 159 --------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTN 200
A++ V ++ + G VPD+ T++ LI T ++G+ L L D+ N
Sbjct: 269 GYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRN 328
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ V+ +I+ +LC +F DAF M+ PPN Y
Sbjct: 329 GVKPDVVTYSTLIN----VLCKER-----------KFQDAFRLLELMEAAGSPPNVVTY 372
>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 44/194 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M++KGF P+ T++ L++ +C ++ +A+ ++ G NP ++S ++N K
Sbjct: 242 FAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCK 301
Query: 169 ----------------QGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
+ +P++ T+NSLI+ +CKSG++ G D+ T
Sbjct: 302 IKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIIT 361
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSE 246
+ A+ K D+A LL L + G L P++ G+ +DA F +
Sbjct: 362 YSSLLDALCKNHPGDKAIALLTKLKDQG--LQPNMYTYTILINGLCKGGRPEDAQNIFED 419
Query: 247 MQIKTHPPNRPVYA 260
+ +K + N Y
Sbjct: 420 LLVKGYNINVNTYT 433
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++ +G P+ T+TIL+N C G+ +AQ ++L KG+N V + M++
Sbjct: 382 LTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCN 441
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G F + + K E G + T +I I ++ + D+A +LL ++ G
Sbjct: 442 NG------MFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDENDKAEKLLLEMITRG 494
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 68/178 (38%), Gaps = 40/178 (22%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------- 154
N+L CFV F+ V+ +C GK++EA+ + KGF P
Sbjct: 206 NNLRECFVS-----FMFQYLGMMAPVSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSL 260
Query: 155 --------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK----SGELGLCADVNTNKI 202
V AK + N M + G PD++++N LI CK + L +++ KI
Sbjct: 261 MDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKI 320
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
V+ +ID LC G+ A EM + PP+ Y+
Sbjct: 321 IPNVVTYNSLIDG----LC-----------KSGKISYALKLVDEMHDRGQPPDIITYS 363
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 29/145 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M+ G VPD+ T+ I+++ +C G + +A +F E+ + F P V +
Sbjct: 554 MLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGM 613
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
A ++ N ++ +G D+ T+N++I ++CK G+ L D T K+
Sbjct: 614 LEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKV 673
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227
I A++ I EA +VE G
Sbjct: 674 IIAALTDAGRIKEAEEFTLKMVESG 698
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 109/262 (41%), Gaps = 53/262 (20%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LH-VC 108
T++ M+ + LS T + +I + K G + A + ++ T+ + N+ LH +C
Sbjct: 410 TLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLC 469
Query: 109 FVRMI-----------RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-- 155
+ + ++G++ D+ ++ IL+ + K A E+ ++ P
Sbjct: 470 VEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTI 529
Query: 156 --------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC------- 194
V A +N+M++ G VPD T+N +I C G +
Sbjct: 530 TYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEM 589
Query: 195 ------ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--------HKLFPSL---GQF 237
DV T I + + +E M+++A +L LV G + + SL G+F
Sbjct: 590 IENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKF 649
Query: 238 DDAFCFFSEMQIKTHPPNRPVY 259
++A+ +EM+ K P++ Y
Sbjct: 650 ENAYDLLTEMEAKKLGPDQYTY 671
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 99/258 (38%), Gaps = 53/258 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
MK LS T ++++ + + GL+ A +V T N V YN L F
Sbjct: 274 MKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGK 333
Query: 111 ---------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP 154
M + +PD T+ L++ E ++E+ KG +N
Sbjct: 334 IDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNI 393
Query: 155 PVR---------SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
++ A ++KM + G PD T+N+LI CK+G++ G
Sbjct: 394 ILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKG 453
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL------FPSLGQFDD-----AF 241
L D T + + E +DEA+ LLC+ + G+ L LG F D A
Sbjct: 454 LKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRAL 513
Query: 242 CFFSEMQIKTHPPNRPVY 259
+ EM+ + P+ Y
Sbjct: 514 NLWDEMKERQIMPSTITY 531
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 31/155 (20%)
Query: 60 LSVFPQTLSLIIEEFGK--HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------ 111
L V P T S I +G + +A++ NK + F C + YN++ ++
Sbjct: 207 LGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQE 266
Query: 112 -------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
M KG P+K T+ +LV +C G ++EA + ++ ++ P V + +VN
Sbjct: 267 ARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVN 326
Query: 165 ----------------KMIKQGSVPDLETFNSLIE 183
+M K +PD+ T+N+LI+
Sbjct: 327 GFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLID 361
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 45/182 (24%)
Query: 83 AVEVFNKCTAFNCQQCVLLYNSLHVCFVRM----------------IRKGFVPDKRTHTI 126
A ++FNK N + +L N+L VR I+ G VP+ + I
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNI 218
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK----------------QG 170
L+ +C K+++A +++ ++S+ G P S +++ ++K +G
Sbjct: 219 LIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKG 278
Query: 171 SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
P+ T+N L+ C+ G L L V T + + + IDEAF
Sbjct: 279 LSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAF 338
Query: 218 RL 219
R+
Sbjct: 339 RI 340
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------- 105
L KPD V+ T ++++ + G+++ A+++FN + V+ YN++
Sbjct: 593 LFKPD---VY--TCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEG 647
Query: 106 -----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
+ M K PD+ T+ +++ A +G+++EA+EF ++ + G
Sbjct: 648 KFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGI 699
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 19/138 (13%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
I++E + G + + + K F CQ + + L F M R G PD T+TIL++
Sbjct: 439 ILKEMMRKGFVPD-TSTYTKVITFLCQAKKVEKSFL--LFQEMKRAGVNPDVYTYTILID 495
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------AKQMV------NKMIKQGSVP 173
++C +G + +A+ + E+ G +P V + +KQ++ ++M+ P
Sbjct: 496 SFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYP 555
Query: 174 DLETFNSLIETICKSGEL 191
+ T+++LI+ +CK+GE+
Sbjct: 556 NAVTYSALIDGLCKAGEI 573
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 86 VFNKCTAFNCQQCVLLYNSLHVCFV---RMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142
V NK N +C+ F M+RKGFVPD T+T ++ C + K+ ++
Sbjct: 414 VLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFL 473
Query: 143 FLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETIC 186
QE+ G NP V + A+ ++M G P++ T+ +L+
Sbjct: 474 LFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYL 533
Query: 187 KSGEL 191
KS +L
Sbjct: 534 KSKQL 538
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 100/263 (38%), Gaps = 67/263 (25%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---------- 105
D+ ++ P T +I+ K + +A E+ + A C+ ++Y++L
Sbjct: 600 DTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKI 659
Query: 106 ---HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
F+RM + G++P T+T L++ G++ A + L E+ + NP V + M
Sbjct: 660 DNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAM 719
Query: 163 VNKMIKQGSV----------------PDLETFNSLIETICKSGEL-------------GL 193
++ + K G + P++ T+ +LI+ + K+G+ G
Sbjct: 720 IDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGC 779
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLL----------------CNLVEDGHKLFPSLGQF 237
+ T ++ I ++DEA LL C + K SLG
Sbjct: 780 APNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLG-- 837
Query: 238 DDAFCFFSEMQIKTHPPNRPVYA 260
EM+ P PVY
Sbjct: 838 -----LLEEMESHETVPIAPVYG 855
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 42/245 (17%)
Query: 45 ELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104
+L+M K + M DS + T + +I+ K G I+ A+ + + C V+ Y +
Sbjct: 695 DLAM-KVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTA 753
Query: 105 L-------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-- 149
L F +M KG P+ T+ +L+N C++G + EA L E+
Sbjct: 754 LIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTH 813
Query: 150 ------------KGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+GF+ ++ ++ +M +VP + LI++ K+G L ++
Sbjct: 814 WPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALEL 873
Query: 198 NTNKISIPA---VSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
+ + + + ++ M + LC Q ++AF ++EM K P
Sbjct: 874 HKELVEVSSSLNMTSTGMYASLIQALC-----------LASQVEEAFTLYTEMTRKGIVP 922
Query: 255 NRPVY 259
+ V+
Sbjct: 923 DLIVF 927
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 43/231 (18%)
Query: 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV------- 110
D V + L++++ +HGL D A+E + F + + YN+L
Sbjct: 163 DDREVLRRLLNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEM 222
Query: 111 ------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164
M GF D+ T A C G+ +A L L + FN QM++
Sbjct: 223 GFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADA---LNMLEKEDFNLDTVLCTQMIS 279
Query: 165 KMIK----------------QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
+++ +P++ T+ +L+ K + G C + ++
Sbjct: 280 GLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNP 339
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ + CN G + A+ F+ M PP Y
Sbjct: 340 NPSLFNSLVHGYCN-----------AGDYAYAYKLFNRMTTCGSPPGYVAY 379
>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
Length = 845
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F M +G VP+ T+ +++A C +G M EA + +Q + G P + ++ +
Sbjct: 546 NEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNIL 605
Query: 163 VNKMIKQGSV----------------PDLETFNSLIETICKSGEL-------------GL 193
++ + ++G + PD T+N++I C++ ++ G
Sbjct: 606 IDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGC 665
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
D+ T I + ++ + M+++A +LL LV
Sbjct: 666 EPDIFTYNIWMHSLCRNHMLNQAGKLLDELV 696
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 29/145 (20%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-----HVCFVR--------MIRKGFVPDKR 122
+ G + A VF + TA + + +N++ H VR M + G PD
Sbjct: 195 RSGEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVC 254
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE------ 176
++ IL+ C G R+A + + + G P V + +V+ + +G +P+
Sbjct: 255 SYNILIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEM 314
Query: 177 ----------TFNSLIETICKSGEL 191
TFN LI+ KSG++
Sbjct: 315 AQVGIQVNTITFNVLIDGYAKSGQM 339
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M G PD T+ ++NA+C + M A F+ ++ G P +
Sbjct: 625 MCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLCRNHM 684
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
A +++++++ P+ T+N+L++ IC
Sbjct: 685 LNQAGKLLDELVAVDCSPNSVTYNTLMDGICS 716
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 52/225 (23%)
Query: 70 IIEEFGKHGLIDNAVEVF---NK------CTAFN------CQQCVLLYNSLHVCFVRMIR 114
+I + K GL + A E++ NK + FN C Q L + + M+
Sbjct: 431 LIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRL--DEAQLLLEHMVS 488
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
KG+ + TI ++A+ G A + ++ + G V
Sbjct: 489 KGYCLST-SFTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNE 547
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIP 205
A Q +M +G VP+ T+NS+I +CK+G + GL D+ T+ I I
Sbjct: 548 AYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNILID 607
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEM 247
+ +E + LL ++ +G L P ++ +A+C +M
Sbjct: 608 GLCREGKLKMVDNLLLDMCSNG--LTPDTVTYNTIINAYCRAQDM 650
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 26/145 (17%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVRS--- 158
F M R G P T+ ILV+ C G+M EA+ E++ G FN +
Sbjct: 276 FEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAK 335
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSG---ELGLCADVNTNKISIPAVSK 209
A +M +G VPD TFN + K G +L D+ ++ +S +
Sbjct: 336 SGQMDQASAAYREMQARGLVPDSCTFNIIAARAHKFGYAAQLVHDHDMFSSHMSADGLDM 395
Query: 210 -------EFMIDEAFRLLCNLVEDG 227
+ +D+A+ LL +E G
Sbjct: 396 LVCRLCWDHRLDDAWELLLGAIEQG 420
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 47/192 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M +GF D T T++V A+C G+ R + + +S+ G PP
Sbjct: 207 MWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMG-TPPNMVNYSAWIDGLCERG 265
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL--------------GLCADVNTN 200
V+ A ++ +M+ +G P++ T SLI+ +CK G + +V+T
Sbjct: 266 YVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTY 325
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEM 247
+ I KE + A LL +VE G L P+ G FD AF ++M
Sbjct: 326 TVMIGGYCKEGKLARAEMLLGRMVEQG--LAPNTNTYTTLIHGHCKGGSFDRAFELMNKM 383
Query: 248 QIKTHPPNRPVY 259
+++ PN Y
Sbjct: 384 KLEGFLPNIYTY 395
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 32/156 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
+K + + L + T +++I E K G I A+++F + +C + Y ++
Sbjct: 412 YKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAM 471
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F + + G VP K+T+T ++ +C GK+
Sbjct: 472 YCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKL------------------ 513
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
SA ++ +M++ G +PD T+ +LI ++CK L
Sbjct: 514 -TSALKVFERMVQHGCLPDSITYGALISSLCKESRL 548
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 19/81 (23%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ +G P+ T+T L++ C G D+ F +++NKM +G
Sbjct: 347 RMVEQGLAPNTNTYTTLIHGHCKGGSF-----------DRAF--------ELMNKMKLEG 387
Query: 171 SVPDLETFNSLIETICKSGEL 191
+P++ T+N++I CK G++
Sbjct: 388 FLPNIYTYNAIIGGFCKKGKI 408
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 43/216 (19%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----- 109
M L+ T + +I K G D A E+ NK + YN++ F
Sbjct: 348 MVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGK 407
Query: 110 -------VRM-IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+RM +G DK T+TIL+ C G + A + +++++K +P + +
Sbjct: 408 IQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTT 467
Query: 162 MV----------------NKMIKQGSVPDLETFNSLIETICKSGEL-------------G 192
++ +K + G VP +T+ S+I C+ G+L G
Sbjct: 468 IIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHG 527
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
D T I ++ KE ++EA R L + D H
Sbjct: 528 CLPDSITYGALISSLCKESRLEEA-RALFETMLDKH 562
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSA 159
G PD R+ LV C G+ EA L + +GF R+
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNV 235
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
+ +M + G+ P++ +++ I+ +C+ G + GL +V T+ I
Sbjct: 236 TDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295
Query: 207 VSKEFMIDEAFRLLCNLVE 225
+ K ++ AFRL LV+
Sbjct: 296 LCKIGWMERAFRLFLKLVK 314
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 37/183 (20%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A N + + L++ + + +PD T++IL+ C +M EA LQE+
Sbjct: 344 CKAGNLSEALSLHSEIE-------KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKK 396
Query: 150 KGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL-- 191
KGF P + +++ K+G++ P++ TF++LI+ CK+G++
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEA 456
Query: 192 -----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-HKLFPSLGQFDD 239
GL DV I K+ EAFRL + E G H +L D
Sbjct: 457 AMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLID 516
Query: 240 AFC 242
C
Sbjct: 517 GLC 519
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 29/137 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M +KGF+P+ T+ L++ +C G M +A E ++++KG P +
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
+A + +M+ +G +PD+ + +LI+ K G E GL +V T
Sbjct: 454 MEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSC 513
Query: 203 SIPAVSKEFMIDEAFRL 219
I + K+ I +A +L
Sbjct: 514 LIDGLCKDGRISDAIKL 530
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 31/163 (19%)
Query: 60 LSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------- 108
+ V P Q +++++ K G D +V+ A V+ Y +L C
Sbjct: 152 MDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLK 211
Query: 109 ----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------- 154
F MI K P +TIL+ C ++ EA+ + + + G P
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271
Query: 155 ------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V+ A ++ +M+ G +P++ TF LI+ +CK+ E+
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEM 314
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I+ + K G ++ A+EV ++ T + ++ +++L C + M
Sbjct: 405 TYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG +PD +T L++ G +EA +E+ + G +P V + +++ + K G +
Sbjct: 465 VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRI 524
Query: 173 PD 174
D
Sbjct: 525 SD 526
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
+MWK M S T +I+ + G A +F++ V++Y L
Sbjct: 176 TMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILI 235
Query: 106 -HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+C F M G +P+ T+ +++ +C +++A E QE+ G
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLL 295
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
P V SA++ + M G VP++ +N LI+ CK+G L
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNL 349
>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
Length = 380
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 29/139 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M G PD T+ L+ C S ++ EA L + ++G P VRS
Sbjct: 137 FGTMAAMGCAPDAATYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCK 196
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNT 199
A+++V+ MI+ G PD+ +++ LI+ +C+ GE G + T
Sbjct: 197 QGRVLEAERLVDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVT 256
Query: 200 NKISIPAVSKEFMIDEAFR 218
I + A+ + +DEAFR
Sbjct: 257 YNIYMSALCRMGFLDEAFR 275
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 42/223 (18%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S +K ++L+K + L T S+ I+ K ++ A ++FN + ++Y +L
Sbjct: 477 SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536
Query: 106 --HV----------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H RM + +P+ T+ L+ C GK++E ++ +S G
Sbjct: 537 DGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVK 596
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------- 189
P V + A ++ N+M+ G PD+ T+ + I T C SG
Sbjct: 597 PTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGM 656
Query: 190 -----ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
E G+ D T + I A + + +AF +L +++ G
Sbjct: 657 MARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAG 699
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 42/220 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV-C- 108
+ LM+ ++ +T + +I F K + A+ + +K ++ YNSL HV C
Sbjct: 412 LGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCK 471
Query: 109 ---------FVRMIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
+ ++++ G VPD+ T+++ ++ C S +M EA + L +KG
Sbjct: 472 AGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVM 531
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG------------- 189
+ A ++ +M + +P+ T+NSLI +CK G
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMS 591
Query: 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
++G+ V T I I + +E D A R+ +V GHK
Sbjct: 592 KMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHK 631
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 103/301 (34%), Gaps = 88/301 (29%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
S +K +M + + II + G ID + +F K +C V Y +
Sbjct: 267 SAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVII 326
Query: 106 HVCFV------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H F M + P+ T+T++V+A C K+ E++ L E+ +KG
Sbjct: 327 HALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLV 386
Query: 154 PP---------------------------------------------------VRSAKQM 162
P V A +
Sbjct: 387 PSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTL 446
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSK 209
++KM++ P L T+NSLI CK+G E GL D T + I + K
Sbjct: 447 LSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK 506
Query: 210 EFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPV 258
++EA L +L E G K ++ +L G+ D+A M + PN
Sbjct: 507 SKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSST 566
Query: 259 Y 259
Y
Sbjct: 567 Y 567
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHV------------CFVRM 112
T +++IEE + G D+A VFN+ +F + V Y + +H RM
Sbjct: 601 TYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARM 660
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
I G +PD T+T+L++A+ G +A L+ + D G +P
Sbjct: 661 IEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDP 702
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 36/208 (17%)
Query: 69 LIIEEFGKHGLIDNAVEVFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIR 114
L+ + K+ + D A+++F + F CQ + YNSL F+
Sbjct: 58 LVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 117
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
G P+ +T+ IL+ C + +A+E L + +GF+P V S ++N + K G + D
Sbjct: 118 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSD 177
Query: 175 -LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
L+ F+ + E G+ DV I I K+ I A + L++ G ++P+
Sbjct: 178 ALKLFDEMPER-------GVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPN 229
Query: 234 L-------------GQFDDAFCFFSEMQ 248
+ G+FD++F + M+
Sbjct: 230 IPSYNVMINGLCKCGKFDESFEIWHRMK 257
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 42/206 (20%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFV 110
P + +I F + +++A+ F + C V+ YN+L +
Sbjct: 439 PYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVK 498
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR------------- 157
M++KG+ P+ T+++L+N C K+ A + +KGF P V+
Sbjct: 499 EMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 558
Query: 158 ---SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
A Q+ ++M ++ VP+L T N+L+E K + GL D+ +
Sbjct: 559 KVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYN 618
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDG 227
I++ + I +A L + V+ G
Sbjct: 619 ITLKGLCSCHRISDAVGFLNDAVDRG 644
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+S+W EL+ T +++ K+G ++ A+ + + Y+S+
Sbjct: 354 ISIW---ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 410
Query: 106 HVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
R M + G P+ ++N + + K+ +A F + KG
Sbjct: 411 INGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGC 470
Query: 153 NPPVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
P V + ++N +M+++G P++ T++ L+ +C+ +L + +
Sbjct: 471 FPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALN 530
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
+ A+ K F D N++ G S G+ +DA +SEM+ + PN
Sbjct: 531 -----LWCQALEKGFKPDVKMH---NIIIHG---LCSSGKVEDALQLYSEMKQRNCVPN 578
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAF-----NCQQCVLLYNSLHVC---------FVRMI 113
+++I+ F K G I NA E++ + N ++ N L C + RM
Sbjct: 198 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 257
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
+ D T++ L++ C SG + A +E+++ G +P V M+N ++ G +
Sbjct: 258 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 317
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
+ ++E K G C V + I I + + +DEA +
Sbjct: 318 ECLELWKVME---KEG----CRTVVSYNILIRGLFENAKVDEAISI 356
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 47/192 (24%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M R+GF D T T++V A+C G+ R+ + + G NPP
Sbjct: 207 MWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMG-NPPNVVNYTAWVDGLCKRG 265
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG--------------ELGLCADVNTN 200
V+ A ++ +M+ +G P++ T SLI+ +CK G +V+T
Sbjct: 266 YVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTY 325
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEM 247
+ I KE + A LL +VE G L P+ G FD AF ++M
Sbjct: 326 TVMIGGYCKEGKLARAEMLLGRMVEQG--LAPNTNTYTTLIDGHCRGGSFDRAFELMNKM 383
Query: 248 QIKTHPPNRPVY 259
+++ PN Y
Sbjct: 384 KLEGFLPNIYTY 395
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 32/156 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
+K + + L T +++I E K G I A+++FN+ +C + Y ++
Sbjct: 412 YKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAM 471
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
F + + G VP K+T+T ++ +C GK
Sbjct: 472 YCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGK------------------- 512
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
SA ++ +M++ G +PD T+ +LI +CK L
Sbjct: 513 STSALKVFERMVQHGCLPDPITYGALISGLCKESRL 548
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ +G P+ T+T L++ C G D+ F +++NKM +G
Sbjct: 347 RMVEQGLAPNTNTYTTLIDGHCRGGSF-----------DRAF--------ELMNKMKLEG 387
Query: 171 SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
+P++ T+N++I CK G++ GLC D T + I K+ I A
Sbjct: 388 FLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYAL 447
Query: 218 RLLCNLVED 226
L + E+
Sbjct: 448 DLFNQMAEN 456
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 29/165 (17%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----- 109
M L+ T + +I+ + G D A E+ NK + YN++ F
Sbjct: 348 MVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGK 407
Query: 110 -------VRM-IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+RM +G PDK T+T+L+ C G + A + ++++ +P + +
Sbjct: 408 IQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTT 467
Query: 162 MV----------------NKMIKQGSVPDLETFNSLIETICKSGE 190
++ +K + G VP +T+ S+I C+ G+
Sbjct: 468 IIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGK 512
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----------------PPVRSA 159
G PD R+ LV C G+ EA L + +GF+ R
Sbjct: 176 GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDV 235
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
+ +M++ G+ P++ + + ++ +CK G + GL +V T+ I
Sbjct: 236 PGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295
Query: 207 VSKEFMIDEAFRLLCNLVE 225
+ K + AFRL LV+
Sbjct: 296 LCKIGWTERAFRLFLKLVK 314
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------- 158
F M R G PD T+T L++ +C G + +A+ + E+ G P V +
Sbjct: 145 FQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLK 204
Query: 159 ------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVS 208
A ++ M+ G VP++ T+ +LI+ CK+GE + A + +K+ IP V
Sbjct: 205 TRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVD 264
Query: 209 KEFMI 213
F I
Sbjct: 265 IYFRI 269
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWC 132
E + G++ N V N C C C+ + + M+ KGF+PD T++ ++ C
Sbjct: 77 EMLEMGVVLNKV---NVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLC 133
Query: 133 SSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLE 176
++ K+ +A + QE+ G P V + A+ ++M + G P++
Sbjct: 134 NASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVV 193
Query: 177 TFNSLIETICKSGEL 191
T+ +LI K+ +L
Sbjct: 194 TYTALIHAYLKTRKL 208
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 48/188 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ FGK G +D +E+ M KG P+ T+
Sbjct: 421 TYTAMIDGFGKAGRVDRCLELLQ----------------------LMTSKGCAPNFITYR 458
Query: 126 ILVNAWCSSGKMREAQEFLQELSD--------------KGFNPPVRSAKQMVNKMIKQGS 171
+L+N C++G + +A + L+E+ +GF+ ++ ++ ++ + GS
Sbjct: 459 VLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGS 518
Query: 172 VPDLETFNSLIETICKSGELGLCADV------------NTNKISIPAVSKEFMIDEAFRL 219
VP L + LI+ K+G L + ++ NT I +++ +D+AF+L
Sbjct: 519 VPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVSLIESLTLACKVDKAFKL 578
Query: 220 LCNLVEDG 227
++ G
Sbjct: 579 YSDMTRRG 586
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 29/151 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ F K G +D A EVF K C V Y+SL +M+
Sbjct: 320 LIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENS 379
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK----------- 165
P+ +T +V+ C GK EA + + +KG P V + M++
Sbjct: 380 CAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCL 439
Query: 166 -----MIKQGSVPDLETFNSLIETICKSGEL 191
M +G P+ T+ LI C +G L
Sbjct: 440 ELLQLMTSKGCAPNFITYRVLINHCCAAGLL 470
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 40/188 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +G P++ + L++ +C GK+ EAQE ++ G +P V +
Sbjct: 305 MSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKR 364
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
A +++ KM++ P++ + +++ +CK G E G +V T
Sbjct: 365 LDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTA 424
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDG-------HKLFP----SLGQFDDAFCFFSEMQIKT 251
I K +D LL + G +++ + G DDA EM+
Sbjct: 425 MIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTY 484
Query: 252 HPPNRPVY 259
P + +Y
Sbjct: 485 WPKHIGMY 492
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S +I++ K +D A++V K +C V++Y + + + M
Sbjct: 351 TYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMM 410
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG P+ T+T +++ + +G++ E LQ ++ KG P + + ++N G +
Sbjct: 411 EEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLL 470
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
D ++ +G+ V I S EF+ + LL L EDG
Sbjct: 471 DDAHKLLEEMKQTYWPKHIGMYRKV------IEGFSHEFV--ASLGLLAELSEDG 517
>gi|224576661|gb|ACN57004.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F MIRKG P+ +T+L++ + SG + +A L + D+GF P V + +
Sbjct: 4 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVV 63
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
VN + K G V + L+ F + C+ G + I + K IDEA RL
Sbjct: 64 VNGLCKNGRVEEALDYFQT-----CRFN--GXAINSMFYSSLIDGLGKAGRIDEAERLFE 116
Query: 222 NLVEDG--------HKLFPSL---GQFDDAFCFFSEMQ 248
+ E G + L +L G+ D+A F M+
Sbjct: 117 EMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLFKRME 154
>gi|145334827|ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g57250, mitochondrial; Flags: Precursor
gi|332009488|gb|AED96871.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 971
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 41/219 (18%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVF----NK----------CTAFNCQQCVLLYNS 104
FP +L+ +I F + G +DNA+EV NK C+A C +
Sbjct: 129 GAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPE 188
Query: 105 LHVCFVR-MIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
L + F + G VP+ T+T LV+A C GK+ E ++ ++ L D+GF
Sbjct: 189 LALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNW 248
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++ K G++ D L ++E G+ DV + I I +SKE ++EA LL
Sbjct: 249 IHGYFKGGALVDALMQDREMVEK-------GMNRDVVSYSILIDGLSKEGNVEEALGLLG 301
Query: 222 NLVEDGHKLFPSL-------------GQFDDAFCFFSEM 247
++++G + P+L G+ ++AF F+ +
Sbjct: 302 KMIKEGVE--PNLITYTAIIRGLCKMGKLEEAFVLFNRI 338
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------HVCFVRMIRK------ 115
++II K G + A+ + + + + YNSL C V +R
Sbjct: 659 TIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLEN 718
Query: 116 -GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS--- 171
G VP + T+ IL++ C G +A++ L + KG P + +V+ K G
Sbjct: 719 IGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTED 778
Query: 172 -------------VPDLETFNSLIETICKSGEL 191
PD T +S+I+ CK G++
Sbjct: 779 AMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDM 811
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
Y + M PD T+ ++ +C +G++ EA E EL + V +
Sbjct: 463 YGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAV-CYNR 521
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAV 207
+++ + K+G ++ E + + E GL D++T++ + ++
Sbjct: 522 IIDALCKKG------MLDTATEVLIELWEKGLYLDIHTSRTLLHSI 561
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 30/149 (20%)
Query: 109 FVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------- 158
F+++I+ + P+ T+T+++ +C GK+ A+ L + ++G P +
Sbjct: 201 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHC 260
Query: 159 -------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVN 198
A +++NKM ++G +P++ T+N++I+ CK G++ GL D
Sbjct: 261 KGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKI 320
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
T I I K+ I A L +VE+G
Sbjct: 321 TYTILITEHCKQGHITYALDLFDRMVENG 349
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 38/159 (23%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
+K + + L T +++I E K G I A+++F+
Sbjct: 304 YKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFD-------------------- 343
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV----- 163
RM+ G PD +T L++ +C +M E+Q+F + G P ++ M+
Sbjct: 344 --RMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCK 401
Query: 164 -----------NKMIKQGSVPDLETFNSLIETICKSGEL 191
+M++ G D T+ +LI +CK L
Sbjct: 402 VGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 440
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F RM+ G P+ +T ++ C +++A L+E+ +G P V + +++
Sbjct: 131 FRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCK 190
Query: 165 ------------KMIKQGSV-PDLETFNSLIETICKSGEL-------------GLCADVN 198
K+IK S P++ T+ +I C+ G+L GL + N
Sbjct: 191 IGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTN 250
Query: 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQ 248
T I K D AF L+ + ++G P++ ++ D FC ++Q
Sbjct: 251 TYTTLIGGHCKGGSFDRAFELMNKMKQEG--FLPNIYTYNAVIDGFCKKGKIQ 301
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 43/197 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ-------------CVLLYNSLHVCFVRM 112
T S ++ F +HG +D + F + A C Y V
Sbjct: 230 TYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEE 289
Query: 113 IRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ-- 169
+R+ G VPD T+++L+N + +G+ + E L+++ G P V + ++N + K+
Sbjct: 290 LRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERK 349
Query: 170 --------------GSVPDLETFNSLIETICKSGEL------------GLCA-DVNTNKI 202
GS P++ T+NS+++ +CKSG++ C+ DV T I
Sbjct: 350 FQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSI 409
Query: 203 SIPAVSKEFMIDEAFRL 219
+ +SK M+D A +L
Sbjct: 410 IMNGLSKAGMLDSAVKL 426
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 49/196 (25%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------------- 155
F + +G V + T+ ++V+ C +G +A E ++ELS G P
Sbjct: 42 FTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELS--GVYTPTLFIYNGIITGLC 99
Query: 156 ----VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV---------NTNKI 202
V A +++ KM+++ VP++ T+ L+ +C+S + L +V N I
Sbjct: 100 RASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPI 159
Query: 203 S----IPAVSKEFMIDEAFRLL--------------CNLVEDGHKLFPSLGQFDDAFCFF 244
+ I +S+ IDEA R++ C + G + DDA F
Sbjct: 160 TYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGG---LCKASRLDDALKFM 216
Query: 245 SEMQIKTHPPNRPVYA 260
EM+ PN Y+
Sbjct: 217 EEMRQMGVRPNEVTYS 232
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 49/239 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK------------CTAFNCQQCVLLY 102
MK + P T +I+ + G ID A+ V + CT C
Sbjct: 149 MKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASR 208
Query: 103 NSLHVCFVRMIRK-GFVPDKRTHTILVNAWCSSGKM-REAQEFLQELSDKGFNPPVRS-- 158
+ F+ +R+ G P++ T++ LV+ + G++ R + F +E + KG + +
Sbjct: 209 LDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYP 268
Query: 159 --------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTN 200
A++ V ++ + G VPD+ T++ LI T ++G+ L L D+ N
Sbjct: 269 GYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRN 328
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ V+ +I+ +LC +F DAF M+ PPN Y
Sbjct: 329 GVKPDVVTYSTLIN----VLCKER-----------KFQDAFRLLELMEAAGSPPNVVTY 372
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 56/242 (23%)
Query: 40 LTLISELSMWKTIELM--KPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNC 95
LT I+++ + T+ + K DS + P TL+++I F +D A+ V K
Sbjct: 63 LTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAK------ 116
Query: 96 QQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+++ G PD T T LV C GK+ EA + ++ +GF P
Sbjct: 117 ----------------ILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPN 160
Query: 156 VRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGEL-------- 191
V + ++N +MI +G PD+ T+NSLI +C E
Sbjct: 161 VVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLN 220
Query: 192 -----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-HKLFPSLGQFDDAFCFFS 245
+ +V + I + A+ KE + EA ++ +++ G + D C S
Sbjct: 221 EMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRS 280
Query: 246 EM 247
EM
Sbjct: 281 EM 282
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 42/190 (22%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTI 126
+D AV+VF+ C V+ YN+L F M R+ +P+ T++
Sbjct: 282 MDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYST 341
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK--------------QGS- 171
L++ C G++++A E+ G P + + +++ + K +GS
Sbjct: 342 LIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSN 401
Query: 172 -VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAF 217
PD++ +N I+ +C++G+L GL DV T+ I I + K ++DEA
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEAS 461
Query: 218 RLLCNLVEDG 227
+L + E+G
Sbjct: 462 KLFREMDENG 471
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMRE 139
+D V+V+N C+ L + F + +G PD TH I++ C G + E
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDL--EAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDE 459
Query: 140 AQEFLQELSDKGF----------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIE 183
A + +E+ + G N A Q++ +M+ +G D+ T L++
Sbjct: 460 ASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVK 519
Query: 184 TICKSG 189
+ G
Sbjct: 520 MLSDDG 525
>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Brachypodium distachyon]
Length = 613
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 41/185 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + ++ F + GL + A EVF + + V YN+L + R M
Sbjct: 329 TYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLM 388
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
G PD+ ++ ILV+A+ +G REA+ + L +G P ++S
Sbjct: 389 QHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKSHMLLLSAHARSGNV 448
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG------------ELGLCADVNTNKISI 204
+Q++ ++ K G PD N+++ ++G +L ADV ++ +++
Sbjct: 449 GRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERLLAAMDLAGSADVGSHNVAV 508
Query: 205 PAVSK 209
A ++
Sbjct: 509 NAYAR 513
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 43/231 (18%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC--------- 108
S SVF T +I +G++G + ++E+ ++ +L YN+ ++ C
Sbjct: 173 SRSVFSYTA--LINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEG 230
Query: 109 ----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV- 163
F M +G PD T+ L++A G EA+ + ++D G P + + +V
Sbjct: 231 LLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVE 290
Query: 164 ---------------NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVS 208
++M GS+PD+ ++N L+E KSG + V +
Sbjct: 291 TFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTP 350
Query: 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ +L N LF G++DD F EM+ P+ Y
Sbjct: 351 NA----NTYSVLLN-------LFGQSGRYDDVRQLFLEMKSSNTDPDAATY 390
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 42/243 (17%), Positives = 93/243 (38%), Gaps = 53/243 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-----QCVLL--------YNSLHVCFVRM 112
+ ++++E + K G I A+ VF++ A C VLL Y+ + F+ M
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
PD T+ IL+ + G +E ++ ++ P + +
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKIS 203
A++++ M VP + + +IE ++ E+G + T
Sbjct: 439 EDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSL 498
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQIKTH 252
+ + ++ ++ E+ +L LV+ G + + G+F++A + +M+
Sbjct: 499 LYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRC 558
Query: 253 PPN 255
P+
Sbjct: 559 DPD 561
>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
Length = 410
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 37/203 (18%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR- 111
E M+ + + T +L+I+ +GK G + NA+ FN+ A Q V+ YN L F R
Sbjct: 167 EAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRA 226
Query: 112 ------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS- 158
M + P K T+TIL+ A+ +M A E L E+ G V+S
Sbjct: 227 RDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSY 286
Query: 159 ---------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNT 199
A+++ M +G P+ ++ +I + G L L ++
Sbjct: 287 GVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRK 346
Query: 200 NKISIPAVSKEFMIDEAFRLLCN 222
+ + IP V+ + RLLCN
Sbjct: 347 SGL-IPNVASYCL---TIRLLCN 365
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 40/198 (20%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------ 155
+ S + F M KG V + ++ IL+ C GK+++A + + + +G +P
Sbjct: 124 FKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNL 183
Query: 156 ----------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG------------- 192
+ +A N+M G P + T+N LI C++ ++
Sbjct: 184 LIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERR 243
Query: 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-FPSLGQFDDAFC--------- 242
L T I I A +KE +D AF +L + + G ++ S G A C
Sbjct: 244 LAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHAR 303
Query: 243 -FFSEMQIKTHPPNRPVY 259
F M K PN +Y
Sbjct: 304 KLFQSMDSKGVKPNNVLY 321
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 44/177 (24%)
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPP------------VRSAKQM----VNKMIK 168
T LV+ C SG + EA+ + G P VR ++M V +M +
Sbjct: 42 TALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRR 101
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G P+L T+N L+ C++GE G+ +V + I I + + + +
Sbjct: 102 GGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKD 161
Query: 216 AFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
A +L + +G + PS+ G+ +A FF++M+ P+ Y
Sbjct: 162 AAQLFEAMRREG--IHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTY 216
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ +GK G ++ + ++ C V+ YN+L CF + M
Sbjct: 236 TYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEM 295
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PV 156
R G + + T + V+A+C G +REA + ++ +G P +
Sbjct: 296 KRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRL 355
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
A ++++M+ QG VP++ T+ +++ +CK G++ + DV
Sbjct: 356 DDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDV 396
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 90/248 (36%), Gaps = 49/248 (19%)
Query: 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV-- 118
S P ++ HGL+D+AV + N + + R + G V
Sbjct: 130 SALPSVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRR 189
Query: 119 -------PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
P+ T I+++ C G++ EA+ + G +P V
Sbjct: 190 LFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGE 249
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
+ +V++M K G D+ T+N+LI K G LG+ A+V T
Sbjct: 250 LEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLST 309
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKT 251
+ A KE ++ EA +L + G + SL G+ DDA EM +
Sbjct: 310 FVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQG 369
Query: 252 HPPNRPVY 259
PN Y
Sbjct: 370 LVPNVVTY 377
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-------------VCFVRM 112
TLS ++ F K GL+ A+++F + Y SL V M
Sbjct: 306 TLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM 365
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG----------------FNPPV 156
+ +G VP+ T+T++V+ C GK+ A + L + G N
Sbjct: 366 VHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNS 425
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A ++N+M +G D+ + +LI +CK +L
Sbjct: 426 ERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKL 460
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 32/221 (14%)
Query: 54 LMKPDSLSVFPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC- 108
L K D + P T+ + I++ F K G AV + +K Q V+ Y +L +C
Sbjct: 467 LHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCK 526
Query: 109 ----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
F +M G P+ + +T L++ +C G + +A + E+ DKG +
Sbjct: 527 AGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVV 586
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
+++ +KQG DL+ +L K E GL D+ I M+ EA
Sbjct: 587 YTSLIDGHMKQG---DLQGAFAL---KAKMIETGLQLDLYCYTCFISGFCNMNMMQEARG 640
Query: 219 LLCNLVEDG-----------HKLFPSLGQFDDAFCFFSEMQ 248
+L ++ G + + LG ++A +EM+
Sbjct: 641 VLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEME 681
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
Q + +I+ F K G + AV + N+ ++Y SL +
Sbjct: 550 QVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAK 609
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI G D +T ++ +C+ M+EA+ L E+ G P + ++ K K G+
Sbjct: 610 MIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGN 669
Query: 172 VPDLETFNSLIETICKS 188
+ + + + +E++ S
Sbjct: 670 MEEASSLQNEMESVLSS 686
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 37/183 (20%)
Query: 90 CTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149
C A N + + L++ + + +PD T++IL+ C +M EA LQE+
Sbjct: 344 CKAGNLSEALSLHSEIE-------KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKK 396
Query: 150 KGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGEL-- 191
KGF P + +++ K+G++ P++ TF++LI+ CK+G++
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEA 456
Query: 192 -----------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-HKLFPSLGQFDD 239
GL DV I K+ EAFRL + E G H +L D
Sbjct: 457 AMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLID 516
Query: 240 AFC 242
C
Sbjct: 517 GLC 519
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 29/137 (21%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV--------------- 156
M +KGF+P+ T+ L++ +C G M +A E ++++KG P +
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453
Query: 157 -RSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
+A + +M+ +G +PD+ + +LI+ K G E GL +V T
Sbjct: 454 MEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSC 513
Query: 203 SIPAVSKEFMIDEAFRL 219
I + K+ I +A +L
Sbjct: 514 LIDGLCKDGRISDAIKL 530
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 31/163 (19%)
Query: 60 LSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------- 108
+ V P Q +++++ K G D +V+ A V+ Y +L C
Sbjct: 152 MDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLK 211
Query: 109 ----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------- 154
F MI K P +TIL+ C ++ EA+ + + + G P
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271
Query: 155 ------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V+ A ++ +M+ G +P++ TF LI+ +CK+ E+
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEM 314
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL- 105
+MWK M S T +I+ + G A +F++ V++Y L
Sbjct: 176 TMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILI 235
Query: 106 -HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+C F M G +P+ T+ +++ +C +++A E QE+ G
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLL 295
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
P V SA++ + M G VP++ +N LI+ CK+G L
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNL 349
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I+ + K G ++ A+EV ++ T + ++ +++L C + M
Sbjct: 405 TYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEM 464
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ KG +PD +T L++ G +EA +E+ + G +P V + +++ + K G +
Sbjct: 465 VIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRI 524
Query: 173 PD 174
D
Sbjct: 525 SD 526
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR---------- 114
+T + I++ + + G +D A+ + + F C + N + F + R
Sbjct: 225 KTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284
Query: 115 ----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
GF PD+ T LVN C +G ++ A E + + +G++P
Sbjct: 285 MSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLG 344
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG---ELGLCADVNTNKISIPAV 207
V+ A + +++MI + P+ T+N+LI T+CK E A V T+K +P V
Sbjct: 345 EVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 38/148 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I+ G +D A+ + + C + V+ YN+L
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL-------------------- 476
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
++ +C + K+REA+E E+ G + V A Q++++MI +
Sbjct: 477 --IDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIME 534
Query: 170 GSVPDLETFNSLIETICKSGELGLCADV 197
G PD T+NSL+ C+ G++ AD+
Sbjct: 535 GQKPDKFTYNSLLTHFCRGGDIKKAADI 562
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 16/91 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+++G+ PD T+ +++ C G+++EA EFL ++ + +P
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
V A ++ + +G +PD+ TFNSLI+ +C
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLC 411
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RMI +G PD T+++L++A C ++ EA L ++S +G + +
Sbjct: 624 RMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 683
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
AK+M N+M G P T+ I + CK G L G+ DV T
Sbjct: 684 KHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 743
Query: 202 ISIPAVSKEFMIDEAFRLLCNLV 224
I I ID AF L +V
Sbjct: 744 ILIDGCGHMGYIDRAFSTLKRMV 766
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 108/297 (36%), Gaps = 93/297 (31%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMI 113
+MK D S + + +I K G + +A +F+ V+ YN++ V + ++
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337
Query: 114 R-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
R G PD T+ L+ C K EA+E L +GF P V
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFT 396
Query: 157 -----------------------------------------------RSAKQMVNKMIKQ 169
+ AK+++N++
Sbjct: 397 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 456
Query: 170 GSVPDLETFNSLIETICKSGELGLCADV-------------NTNKISIPAVSKEFMIDEA 216
G VP++ T+ S+I+ CKSG++ + +V T + + K+ + +A
Sbjct: 457 GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKA 516
Query: 217 FRLLCNLVEDGHKLFPSL--------GQ-----FDDAFCFFSEMQIKTHPPNRPVYA 260
LL + +DG + P++ GQ FD+AF F M+ P+ YA
Sbjct: 517 MALLTKMQKDG--IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYA 571
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 34/169 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL------------QELSDKGFNPPV 156
F M + G PD+ + +L +A C +G+ EA F+ L D GF+
Sbjct: 555 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLID-GFSKAG 613
Query: 157 RS--AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKE 210
+ A ++ +MI +G PD T++ L+ +CK L + ++ I +
Sbjct: 614 NTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYT 673
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+IDE R G+ D A ++EM H P+ Y
Sbjct: 674 ILIDEMLR---------------EGKHDHAKRMYNEMTSSGHKPSATTY 707
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 29/209 (13%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSM-WKTIELMKPDSLSVFPQTLSLII 71
+Y+ + ++++ ++ R+++ + + EL + W+ +E M L+ T S +I
Sbjct: 773 NYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLI 832
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAW 131
F K G ++ A C+LL H+C KG P++ +T+L+
Sbjct: 833 AGFCKAGRLEEA--------------CLLLD---HMC-----GKGLSPNEDIYTLLIKCC 870
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
C + +A F+ +S+ GF P + S + +V + +G D E SL C EL
Sbjct: 871 CDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEG---DFEKVKSL---FCDLLEL 924
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
G D KI + K +D F++L
Sbjct: 925 GYNHDEVAWKILNDGLLKAGYVDICFQML 953
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 33/191 (17%)
Query: 30 YAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN- 88
+A R+L R ++T M + + D L T + +I+ + K G + A F
Sbjct: 153 FALRSLARFDMTEY----MGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRL 208
Query: 89 ------KCTAFNCQQCVLLYNSL----HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGK 136
+ F C VL Y C F+ M G ++ ++TIL+ C +
Sbjct: 209 LLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKC 268
Query: 137 MREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNS 180
+REA + G +P VR+ A+ + + M + G VP + T+N+
Sbjct: 269 VREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNA 328
Query: 181 LIETICKSGEL 191
+I K G +
Sbjct: 329 MIVGYSKLGRM 339
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 59/247 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
II E G I + ++K C + ++ + F M VPD T+TIL++
Sbjct: 467 IIREMMSKGFIPDT-STYSKVIGLLCNASKV--DNAFLLFEEMKSNHVVPDVFTYTILID 523
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVP 173
++C G +++A+++ E+ G P V SA ++ M+ +G +P
Sbjct: 524 SFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIP 583
Query: 174 DLETFNSLIETICKSGELGLCADVNT---NKISIPAVSKEFMIDEA---------FRLLC 221
++ T+ +LI+ CKSG++ + IP V F ID+ + L
Sbjct: 584 NVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALV 643
Query: 222 NLVEDGHKL----------------------------FPSLGQFDDAFCFFSEMQIKTHP 253
+ + HK+ F +G+ D+A F++M + +
Sbjct: 644 DGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYG 703
Query: 254 PNRPVYA 260
PN Y+
Sbjct: 704 PNVYTYS 710
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 53/201 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + +I+ FGK G +D +E+ + A KG P+ T+
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGA----------------------KGCAPNFVTYR 815
Query: 126 ILVNAWCSSGKMREAQEFLQELSD--------------KGFNPPVRSAKQMVNKMIKQGS 171
+L+N C++G + +A + L E+ +GFN + +++++ + +
Sbjct: 816 VLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVA 875
Query: 172 VPDLETFNSLIETICKSGELGL---------------CADVNTNKISIPAVSKEFMIDEA 216
VP + + LI++ CK+G L L AD + I ++S +D+A
Sbjct: 876 VPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKA 935
Query: 217 FRLLCNLVEDGHKLFPSLGQF 237
F L ++++ G P L F
Sbjct: 936 FELYADMIKRGG--IPELSIF 954
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M +G P+ + L++ +C GK+ EAQ ++S++G+ P V + +++++ K
Sbjct: 662 MSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKR 721
Query: 172 VP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-H- 228
+ L+ + ++E C +V I + K DEA+RL+ + E G H
Sbjct: 722 LDLALKVLSRMLENSCA-------PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774
Query: 229 ---------KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F G+ D +M K PN Y
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTY 814
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKG 116
+I+ F K G +D A VF K + V Y+SL RM+
Sbjct: 677 LIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS 736
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P+ +T +++ C GK EA + + +KG +P V + M++ K G V
Sbjct: 737 CAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV---- 792
Query: 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+ +E + + G G + T ++ I ++D+A +LL
Sbjct: 793 --DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLL 834
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--------------- 158
++ F D +T +++ C + EA +FL + P V +
Sbjct: 292 KEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLG 351
Query: 159 -AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
K++++ MI +G P FNSLI C+SG+
Sbjct: 352 RCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 35/157 (22%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------------FV 110
+I + + G A ++ K CQ ++YN L +C +
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
M+ V +K + L C +GK +A ++E+ KGF P + +++
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNAS 494
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGEL 191
+M VPD+ T+ LI++ CK G L
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLL 531
>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
Length = 414
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--H 106
W L PD S +++I+ + G + A+E+ + T F C + N L
Sbjct: 72 WIQDGLYSPDVWS-----FNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDG 126
Query: 107 VCFVRMIRKGF------------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C V+ + KG +P+ T+T +++ +C +G+M++A ++ G P
Sbjct: 127 LCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRP 186
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ SA +M ++I PD+ TFNSLI+ C+ G+L
Sbjct: 187 NTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQL 239
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 59/235 (25%)
Query: 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSL------H-------VCFVRMIRKG-FVPDKRT 123
GL+D A + K + F C+ YN+L H F I+ G + PD +
Sbjct: 25 GLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWS 84
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMI 167
+++ C G +++A E ++ +++ G +P V +++ ++
Sbjct: 85 FNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQ 144
Query: 168 KQG-SVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMI 213
+ G +P++ T+ S+I CK+G + G + T + I K +
Sbjct: 145 RDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDM 204
Query: 214 DEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPN 255
+ A R+ L+ H P + GQ DDA + EM PN
Sbjct: 205 ESAVRMYWQLIL--HSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPN 257
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 26/140 (18%)
Query: 70 IIEEFGKHGLIDN----AVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
I E G+H + N ++ + + CT + + L L+ +R VP +
Sbjct: 245 IWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELN------MRADIVPQTFIYN 298
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQ 169
+++ C GK+ EA + ++ +KG +P + A + +KM++
Sbjct: 299 PIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVET 358
Query: 170 GSVPDLETFNSLIETICKSG 189
G PD T NS I + K+G
Sbjct: 359 GCRPDNITINSFISCVLKAG 378
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 44/188 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I +GK +++AV ++ + +C V+ +NSL + R M
Sbjct: 190 TYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEM 249
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ P+ T +I++++ C+ + EA L+EL+ ++ V
Sbjct: 250 GQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELN------------------MRADIV 291
Query: 173 PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
P +N +I+ +CK G E G D T I I + I EA L
Sbjct: 292 PQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTL 351
Query: 220 LCNLVEDG 227
+VE G
Sbjct: 352 FHKMVETG 359
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 34/165 (20%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV------ 107
PD L T + +++ K G++ A V + + + V+ YNSL H
Sbjct: 262 PDQL-----TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMG 316
Query: 108 ----CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------- 155
F M+RKG VP ++T L+N +C M +A +E+S +G P
Sbjct: 317 KTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLI 376
Query: 156 --------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
+R A + ++M+ G +PDL T+ L + +CK+ L
Sbjct: 377 HGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLA 421
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 29/148 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F M ++G +PD T+ L++ C G++R+A E+ G P +
Sbjct: 357 FEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCK 416
Query: 157 --RSAKQMVNKMIKQGS--VPDLETFNSLIETICKSGEL-------------GLCADVNT 199
R A+ MV + +G+ PD+ ++ +++ +C++GEL GL DV T
Sbjct: 417 NHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRT 476
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDG 227
I I + ++ ++ EA +L + E+G
Sbjct: 477 YTIMINGLCQQGLLAEASKLFGEMDENG 504
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 99/264 (37%), Gaps = 62/264 (23%)
Query: 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC 108
T E +PD L T +I K G A+ NC+ V++Y+++ +C
Sbjct: 151 TGEGFQPDVL-----TYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLC 205
Query: 109 -----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157
F M+ KG P+ T++ L++ C G +EA + + P
Sbjct: 206 KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQL 265
Query: 158 SAKQMVNKMIKQGSV----------------PDLETFNSLIETICKSGELGLCA---DVN 198
+ +V+ + K+G V PD+ T+NSL++ C E+G D
Sbjct: 266 TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM 325
Query: 199 TNKISIPAV----------SKEFMIDEAFRLLCNLVEDGHKLFPS-------------LG 235
K +P+V K ++D+A L + + G L P +G
Sbjct: 326 VRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQG--LIPDTVTYNTLIHGLCHVG 383
Query: 236 QFDDAFCFFSEMQIKTHPPNRPVY 259
+ DA F EM + P+ Y
Sbjct: 384 RLRDAIALFHEMVVYGQIPDLVTY 407
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F ++ KG PD RT+TI++N C G + EA + E+ + G +P +I
Sbjct: 462 FSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSP-----NACTYNLIT 516
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+G + + ET + I+ + G DV+T + + +S + + ++LC V+
Sbjct: 517 RGFLRNNETLRA-IQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQILCEFVQ 572
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 35/173 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
+++ G+ P T T L+ C GK+ EA + +++ +GF P V + ++N + K G+
Sbjct: 115 ILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGN 174
Query: 172 V----------------PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
P + ++++I+++CK + L L +D+ IS +
Sbjct: 175 TSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSS 234
Query: 212 MI---------DEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQIKTH 252
+I EA RL ++ K+ P F+ DA C M +K H
Sbjct: 235 LIHGLCILGHWKEAIRLFYAMIH--RKIMPDQLTFNTLVDALC-KEGMVVKAH 284
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
F +M +GF PD T+ L+N C G A FL+ + + P V
Sbjct: 147 FDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK 206
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A + + M+ +G P+ T++SLI +C G
Sbjct: 207 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGH 244
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 29/139 (20%)
Query: 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK-------------GFVPDKRTHTI 126
ID+A+ +FN+ ++ ++ L RM G + T I
Sbjct: 35 IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQG 170
L+N++C ++ A L ++ G+ P + A Q+ +KM +G
Sbjct: 95 LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154
Query: 171 SVPDLETFNSLIETICKSG 189
PD+ T+ +LI +CK G
Sbjct: 155 FQPDVLTYGTLINGLCKVG 173
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RMI +G PD T+++L++A C ++ EA L ++S +G + +
Sbjct: 509 RMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 568
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
AK+M N+M G P T+ I + CK G L G+ DV T
Sbjct: 569 KHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYN 628
Query: 202 ISIPAVSKEFMIDEAFRLLCNLV 224
I I ID AF L +V
Sbjct: 629 ILIDGCGHMGYIDRAFSTLKRMV 651
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 34/169 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL------------QELSDKGFNPPV 156
F M + G PD+ + +L +A C +G+ EA F+ L D GF+
Sbjct: 440 FEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLID-GFSKAG 498
Query: 157 RS--AKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKE 210
+ A ++ +MI +G PD T++ L+ +CK L + ++ I +
Sbjct: 499 NTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYT 558
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+IDE R G+ D A ++EM H P+ Y
Sbjct: 559 ILIDEMLR---------------EGKHDHAKRMYNEMTSSGHKPSATTY 592
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 108/297 (36%), Gaps = 93/297 (31%)
Query: 54 LMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMI 113
+MK D S + + +I K G + +A +F+ V+ YN++ V + ++
Sbjct: 163 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 222
Query: 114 R-------------KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
R G PD T+ L+ C K EA+E L +GF P V
Sbjct: 223 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFT 281
Query: 157 -----------------------------------------------RSAKQMVNKMIKQ 169
+ AK+++N++
Sbjct: 282 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 341
Query: 170 GSVPDLETFNSLIETICKSGELGLCADV-------------NTNKISIPAVSKEFMIDEA 216
G VP++ T+ S+I+ CKSG++ + +V T + + K+ + +A
Sbjct: 342 GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKA 401
Query: 217 FRLLCNLVEDGHKLFPSL--------GQ-----FDDAFCFFSEMQIKTHPPNRPVYA 260
LL + +DG + P++ GQ FD+AF F M+ P+ YA
Sbjct: 402 MALLTKMQKDG--IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYA 456
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 29/209 (13%)
Query: 13 DYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSM-WKTIELMKPDSLSVFPQTLSLII 71
+Y+ + ++++ ++ R+++ + + EL + W+ +E M L+ T S +I
Sbjct: 658 NYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLI 717
Query: 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAW 131
F K G ++ A C+LL H+C KG P++ +T+L+
Sbjct: 718 AGFCKAGRLEEA--------------CLLLD---HMC-----GKGLSPNEDIYTLLIKCC 755
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
C + +A F+ +S+ GF P + S + +V + +G D E SL C EL
Sbjct: 756 CDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEG---DFEKVKSL---FCDLLEL 809
Query: 192 GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
G D KI + K +D F++L
Sbjct: 810 GYNHDEVAWKILNDGLLKAGYVDICFQML 838
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 87/217 (40%), Gaps = 42/217 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCF 109
+ M+ L + T + +I+ F K G +D+A+ + V+ YN+L C
Sbjct: 313 VRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCM 372
Query: 110 V-----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--- 155
V M KG PD T++ +++A+C + A E Q++ +KG P
Sbjct: 373 VGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAIT 432
Query: 156 -------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----------- 191
+ A + MIK G PD T+ SLI+ CK G +
Sbjct: 433 YSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMV 492
Query: 192 --GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
G+ DV T + I +SK EA +LL L +
Sbjct: 493 KAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE 529
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+ G P+ T+ IL+ A C G +EA L+++ G P
Sbjct: 138 FDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFR 197
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A+++V M+ G P+L TFNS++ +CK+G++
Sbjct: 198 AGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKM 236
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 19/83 (22%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+R+G PD ++ LV +C +G EA E++ KG
Sbjct: 243 FDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI---------------- 286
Query: 169 QGSVPDLETFNSLIETICKSGEL 191
+PD+ TF SLI +CK+G L
Sbjct: 287 ---MPDVVTFTSLIHVMCKAGNL 306
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 34/188 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQ-CVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
+ +E + GL + V +N C+ C + +L V F M +KG +PD T T L+
Sbjct: 242 VFDEMMREGLAPDGVS-YNTLVGGYCKAGCS--HEALSV-FAEMTQKGIMPDVVTFTSLI 297
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---------------- 172
+ C +G + A ++++ ++G + +++ K+G +
Sbjct: 298 HVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIK 357
Query: 173 PDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRL 219
P + +N+LI C G + GL DV T I A K AF L
Sbjct: 358 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 417
Query: 220 LCNLVEDG 227
++E G
Sbjct: 418 NQQMLEKG 425
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 26/152 (17%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAV--EVFNK-CTAFNCQQCVLLYNSLHVCFVRMIRK 115
S + + S+I E G+ + D + +V N C A + LL F M R
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL-------FEEMKRG 512
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G V D T+TI+V+++C +G + +A+++ E+ + G P V A
Sbjct: 513 GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYA 572
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++ M+ +G +P++ T+++LI+ CK+G++
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQV 604
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 94/216 (43%), Gaps = 49/216 (22%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR- 111
E MK L T +++++ F K GLI+ A + FN+ C V+ Y +L +++
Sbjct: 507 EEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566
Query: 112 ------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQE----------------F 143
M+ +G +P+ T++ L++ C +G++ +A + +
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626
Query: 144 LQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++ D P V A+++++ M +G P+ +++LI+ +CK
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686
Query: 188 SGELGLCADVNT--NKISIPAVSKEF--MIDEAFRL 219
G+L +V T ++ PA + +ID F++
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKV 722
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +G P++ + L++ C GK+ EAQE E+S+ GF + +
Sbjct: 665 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A ++++KM++ P++ + +I+ +CK G+
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 759
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
+ FVPD +T L++ C + EA +FL + P V +
Sbjct: 296 ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGR 355
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
K+++N M+ +G P + FNSL+ C SG+
Sbjct: 356 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGD 387
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 49/210 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-CFVR------------MIRKG 116
+I + L + A++ N+ A +C V+ Y++L C + M+ +G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P + LV+A+C+SG D + A +++ KM+K G +P
Sbjct: 368 CYPSPKIFNSLVHAYCTSG-------------DHSY------AYKLLKKMVKCGHMPGYV 408
Query: 177 TFNSLIETICKSGE------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+N LI +IC + L L + ++ V + + R LC
Sbjct: 409 VYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLC--------- 459
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
S G+++ AF EM + P+ Y+
Sbjct: 460 --SAGKYEKAFSVIREMIGQGFIPDTSTYS 487
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
+ M+ G V +K + CS+GK +A ++E+ +GF P + +++N
Sbjct: 436 YSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCN 495
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSG 189
+M + G V D+ T+ ++++ CK+G
Sbjct: 496 ASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 63 FPQTL---SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV------- 110
FP TL S +I+ + K D A +V +K +C V++Y + +C V
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 764
Query: 111 ----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
M KG P+ T+T +++ + GK+ E L+ + KG P + + +++
Sbjct: 765 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHC 824
Query: 167 IKQGSVPDLETFNSLIETI 185
K G+ L+ ++L+E +
Sbjct: 825 CKNGA---LDVAHNLLEEM 840
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S I+ F G ++ A +FN+ N + + L F M
Sbjct: 269 TYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAM 328
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
+KG P+ T+ L++ +C + +M EAQ+ L + DKG P V S
Sbjct: 329 TKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRL 388
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKIS 203
AK ++ +M ++ PD T+++L++ +C+ G GL D+ T
Sbjct: 389 DEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTL 448
Query: 204 IPAVSKEFMIDEAFRLLCNLVE 225
+ + K +DEA +LL ++ E
Sbjct: 449 LDGLCKHGHLDEALKLLKSMQE 470
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 26/168 (15%)
Query: 106 HVCFV-----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
HV F +M + G PD T L+N C G+++EA E+ +G P V S
Sbjct: 142 HVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYS 201
Query: 161 QMVNKMIKQGSVP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++N + K G+ L+ + E CK ++ I ++ K+ ++++A L
Sbjct: 202 TVINGLCKSGNTSMALQLLRKMEEKGCK-------PNLVAYTTIIDSLCKDTLVNDAMDL 254
Query: 220 LCNLVEDG------------HKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
L +V+ G H F SLG ++A F+EM + PN
Sbjct: 255 LSEMVDRGIPPDVVTYSTILHG-FCSLGHLNEATILFNEMVGRNVMPN 301
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 77/239 (32%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++++ K G++ A VF T + YN+L + M
Sbjct: 304 TFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIM 363
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ KG P ++ IL+N +C ++ EA+ L E+S+K P
Sbjct: 364 VDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRP 423
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------------------------- 191
+ A + +M G +PDL T+++L++ +CK G L
Sbjct: 424 QEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNIL 483
Query: 192 -----------------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
G+ + T I I + KE + DEA+ L + +DG
Sbjct: 484 IEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDG 542
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 84/212 (39%), Gaps = 47/212 (22%)
Query: 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC----- 108
+PD +S S +I K G A+++ K C+ ++ Y ++ +C
Sbjct: 194 QPDVISY-----STVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLV 248
Query: 109 ------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP------- 155
M+ +G PD T++ +++ +CS G + EA E+ + P
Sbjct: 249 NDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTIL 308
Query: 156 ---------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GL 193
V A+ + M K+G+ P+ T+N+L++ C + ++ G
Sbjct: 309 VDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGC 368
Query: 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
V++ I I K +DEA LL + E
Sbjct: 369 APVVHSYNILINGYCKRRRLDEAKSLLVEMSE 400
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S +++ KHG +D A+++ + ++LYN L F ++
Sbjct: 444 TYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKL 503
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPV 156
G P RT+TI++ G EA E +++ D GF N
Sbjct: 504 FADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDS 563
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIE 183
+A +++++M+ + D TF L++
Sbjct: 564 STAIRLIDEMVGKRFSADSSTFQMLLD 590
>gi|414872586|tpg|DAA51143.1| TPA: empty pericarp4 [Zea mays]
Length = 595
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 51/203 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
+ + +I+ G G +D A+ VF V M RKG PD T+
Sbjct: 261 SYTTLIQGLGARGRVDEAMRVF----------------------VEMRRKGCAPDAVTYG 298
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFN----------------PPVRSAKQMVNKMIKQ 169
LVN +C +GK+ + EFL +S G + +++ +M +
Sbjct: 299 TLVNTFCKAGKISQGYEFLDAMSRDGLRVDAAVYHGFFVAHEKKEQLEECLELMERMREC 358
Query: 170 GSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEA 216
PDL+ +N +I C+ GE GL V+T I + + + ++ EA
Sbjct: 359 RCPPDLKIYNVVIRLACRLGETKQAMTLWNEMESAGLSPVVDTFAIVVSGLVGQGLLIEA 418
Query: 217 FRLLCNLVEDGHKLFPSLGQFDD 239
++V G + P G D
Sbjct: 419 CSYFKDMVGRGLFVVPQYGVLKD 441
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 70/159 (44%), Gaps = 33/159 (20%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
L+ + +E ++P L + + + ++ + + G +D A V + A + V+++N+L
Sbjct: 172 LTAEQLVEELQP-RLPLSLRHYTALLYGWCRQGKLDEAKHVLARMKAADVALDVVVFNTL 230
Query: 106 HVCFV-------------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152
FV +M ++G P+ ++T L+ + G++ EA E
Sbjct: 231 LAGFVAEGRFEDAFELAGQMEQRGCPPNAVSYTTLIQGLGARGRVDEAMRVFVE------ 284
Query: 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
M ++G PD T+ +L+ T CK+G++
Sbjct: 285 -------------MRRKGCAPDAVTYGTLVNTFCKAGKI 310
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,864,922,977
Number of Sequences: 23463169
Number of extensions: 144684554
Number of successful extensions: 371164
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 1927
Number of HSP's that attempted gapping in prelim test: 323863
Number of HSP's gapped (non-prelim): 24402
length of query: 260
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 121
effective length of database: 9,097,814,876
effective search space: 1100835599996
effective search space used: 1100835599996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 75 (33.5 bits)