BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041786
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94JX6|PP391_ARATH Pentatricopeptide repeat-containing protein At5g18390,
mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2
SV=2
Length = 459
Score = 276 bits (705), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 192/353 (54%), Gaps = 103/353 (29%)
Query: 10 SKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISEL----------------------- 46
+K DYFAA+NH+ NIVR +I+ ER+LN L L + SE
Sbjct: 43 TKGDYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFRVLRATSRSSNDSLRFFNWAR 102
Query: 47 --------------------------SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
SMWK ++ MK SL + +TL IIE++GK+G +
Sbjct: 103 SNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHV 162
Query: 81 DNAVEVFNKC-TAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTI 126
D AVE+FN CQQ V +YNSL + RMIRKG PDKRT+ I
Sbjct: 163 DQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAI 222
Query: 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVR----------------SAKQMVNKMIKQG 170
LVN WCS+GKM+EAQEFL E+S +GFNPP R SAK+MV+KM K G
Sbjct: 223 LVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGG 282
Query: 171 SVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAF 217
VPD++TFN LIE I KSGE LGLC D++T K IPAVSK IDEAF
Sbjct: 283 FVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAF 342
Query: 218 RLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
RLL N VEDGHK FPSL G FDDAF FFS+M++K HPPNRPVY
Sbjct: 343 RLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVY 395
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIR 114
S+II+ K G +DNA +FN+ + ++ YN+L F MI+
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRS 158
+ P+ T ++L++++ GK+REA + L+E+ +G P +
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A QMV+ MI +G PD+ TFN LI CK+ +
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 34/226 (15%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
+ P T++ +I+ F K ++ A+++ + + C ++ +N L C
Sbjct: 363 GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDG 422
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
F M +G + + T+ LV +C SGK+ A++ QE+ + P + S K +++
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482
Query: 166 MIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ G + LE F + ++ EL D+ I I + +D+A+ L C+L
Sbjct: 483 LCDNGELEKALEIFGKIEKS---KMEL----DIGIYMIIIHGMCNASKVDDAWDLFCSLP 535
Query: 225 EDGHKL--------FPSLGQFDD---AFCFFSEMQIKTHPPNRPVY 259
G KL L + D A F +M + H P+ Y
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTY 581
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 38/153 (24%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ G P T LVN C +GK V A ++++M++ G
Sbjct: 183 RMVEMGHKPTLITLNTLVNGLCLNGK-------------------VSDAVVLIDRMVETG 223
Query: 171 SVPDLETFNSLIETICKSGELGLCADV----NTNKISIPAVSKEFMIDEAFRLLCNLVED 226
P+ T+ ++ +CKSG+ L ++ I + AV +ID L +D
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID-------GLCKD 276
Query: 227 GHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
G D+AF F+EM+IK + Y
Sbjct: 277 --------GSLDNAFNLFNEMEIKGFKADIITY 301
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK--- 168
M+++G P+ T+ L++ +C ++ EA + + + KG +P + + ++N K
Sbjct: 359 MMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANR 418
Query: 169 -------------QGSVPDLETFNSLIETICKSGEL 191
+G + + T+N+L++ C+SG+L
Sbjct: 419 IDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKL 454
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
+ F +M +G PD+ T+ IL+ A A E ++E+ GF V + K ++N M
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN-M 622
Query: 167 IKQGSV 172
+ G +
Sbjct: 623 LSSGEL 628
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 100/240 (41%), Gaps = 54/240 (22%)
Query: 70 IIEEFGKHGLIDNAVEVF-NKCTAFNCQQCVLLYNSLHVCFVR-------------MIRK 115
+I F HG +D+A V + T++ V YNSL + + M K
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G P+ ++TILV+ +C GK+ EA L E+S G P + A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
++ +M ++G PD+ TFNSLI +C+ E+ G+ A+ T I A
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKL----FPSL-------GQFDDAFCFFSEMQIKTHPPN 255
+ I EA +L+ +V G L + SL G+ D A F +M H P+
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 56/244 (22%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
+ + M D L + +I F K I AVE+F + C+ V +NSL
Sbjct: 444 YNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503
Query: 106 --------HVCFV--RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
H ++ MI +G V + T+ L+NA+ G+++E
Sbjct: 504 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE---------------- 547
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
A+++VN+M+ QGS D T+NSLI+ +C++GE+ G + I
Sbjct: 548 ---ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNI 604
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKT 251
I + + M++EA +V G F SL G+ +D F ++Q +
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 252 HPPN 255
PP+
Sbjct: 665 IPPD 668
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 29/153 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I F + G I A ++ N+ + YNSL +C F +M
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+R G P + IL+N C SG + EA EF +E+ +G P + + ++N + + G +
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650
Query: 173 ----------------PDLETFNSLIETICKSG 189
PD TFN+L+ +CK G
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGG 683
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD----------KGFNPPVR--S 158
RM+ +GF PD T+ L+N C G++ A++ + GF R
Sbjct: 312 RMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDD 371
Query: 159 AKQMVNKMIKQ-GSVPDLETFNSLIETICKSGELGLCADV---NTNKISIPAVSKEFMID 214
AK +++ M+ G VPD+ T+NSLI K G +GL +V NK P V
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSY---- 427
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
++ DG F LG+ D+A+ +EM PN
Sbjct: 428 -------TILVDG---FCKLGKIDEAYNVLNEMSADGLKPN 458
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 33 RTLNRLNLTLISELSMWKT---IELMKPDSLSVFP-QTLSLIIEEFGKHGLIDNAVEVFN 88
+T++RL + + E ++K I +M+ + FP QT L++E + N
Sbjct: 128 KTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLE-------MRNVYSCEP 180
Query: 89 KCTAFNCQQCVLLYNSLHVC----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
++N +L+ + H F M+ + P T +++ A+C+ ++ A L
Sbjct: 181 TFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLL 240
Query: 145 QELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++++ G P V A Q++ +M G VPD ETFN +I +CK
Sbjct: 241 RDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCK 299
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 31/152 (20%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP---------------- 155
M + G VP+ + L+++ ++ EA + L+E+ G P
Sbjct: 243 MTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 302
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+ A +MVN+M+ +G PD T+ L+ +CK G + D+ +I P +
Sbjct: 303 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL-FYRIPKPEI-------- 353
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
++ N + G F + G+ DDA S+M
Sbjct: 354 ---VIFNTLIHG---FVTHGRLDDAKAVLSDM 379
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 13/126 (10%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---------MIRK--- 115
+++I + G+++ AVE + ++ +NSL R M RK
Sbjct: 603 NILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQA 662
Query: 116 -GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
G PD T L++ C G + +A L E + GF P R+ ++ +I Q ++
Sbjct: 663 EGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722
Query: 175 LETFNS 180
+N+
Sbjct: 723 RRFYNA 728
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 43/214 (20%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-------------LHVCFVRMIRKG 116
+I + + GL + AVE+F + F C V +YN +++ + M R G
Sbjct: 117 VISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDG 176
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV---- 172
F P+ T+ +L+ A C + K+ A++ L E+S+KG P S +++ M + G V
Sbjct: 177 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGR 236
Query: 173 -------PDLETFNSLIETICK----SGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
P + +N+LI +CK G L ++ IS +S +I+ +LC
Sbjct: 237 ELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLIN----VLC 292
Query: 222 NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPN 255
N GQ + AF F ++M + PN
Sbjct: 293 N-----------SGQIELAFSFLTQMLKRGCHPN 315
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-------- 163
M+ KG P+ +++ L+N C+SG++ A FL ++ +G +P + + +V
Sbjct: 272 MVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGT 331
Query: 164 --------NKMIKQ-GSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
N+MI+ G P++ +N+L++ C G + +S+ + +E
Sbjct: 332 TFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNI-------VKAVSVFSHMEEIGCS 384
Query: 215 EAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
R +L+ F G D A +++M PN VY
Sbjct: 385 PNIRTYGSLING----FAKRGSLDGAVYIWNKMLTSGCCPNVVVY 425
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97
L T L +W ++++ L + +++ F HG I AV VF+ C
Sbjct: 328 LRGTTFDALDLWN--QMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSP 385
Query: 98 CVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144
+ Y SL F + M+ G P+ +T +V A C K +EA+ +
Sbjct: 386 NIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI 445
Query: 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+ +S K+ P + TFN+ I+ +C +G L
Sbjct: 446 EIMS-------------------KENCAPSVPTFNAFIKGLCDAGRL 473
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 47/241 (19%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+ELM+ LS +T + +I+ + K + A+ V NK V+ YNSL
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---- 154
+ M +G VPD+ T+T ++++ C S ++ EA + L KG NP
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVM 534
Query: 155 ------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKI 202
V A M+ KM+ + +P+ TFN+LI +C G+L + +
Sbjct: 535 YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMV 594
Query: 203 SI---PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
I P VS + + L+ L++D G FD A+ F +M P+ Y
Sbjct: 595 KIGLQPTVSTDTI------LIHRLLKD--------GDFDHAYSRFQQMLSSGTKPDAHTY 640
Query: 260 A 260
Sbjct: 641 T 641
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 52/221 (23%)
Query: 77 HGL-----IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK-------------GFV 118
HGL ID A+++F K C V Y L RK G
Sbjct: 296 HGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK 355
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------ 172
P+ T+T+L+++ CS K +A+E L ++ +KG P V + ++N K+G +
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415
Query: 173 ----------PDLETFNSLIETICKSG---ELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
P+ T+N LI+ CKS +G+ + K+ V+ +ID R
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR- 474
Query: 220 LCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G FD A+ S M + P++ Y
Sbjct: 475 --------------SGNFDSAYRLLSLMNDRGLVPDQWTYT 501
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F +M+ G PD T+T + +C G++ +A++ M+ KM +
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED-------------------MMAKMRE 665
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADV 197
G PDL T++SLI+ G+ DV
Sbjct: 666 NGVSPDLFTYSSLIKGYGDLGQTNFAFDV 694
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
L + + ++ M+ P+ T+ +VN +C G + EA +++ ++ + G +P +
Sbjct: 198 LVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYT 257
Query: 161 QMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRL 219
++ ++ + + FN + C+ E+ T+ I V++ IDEA L
Sbjct: 258 SLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY-----THLIHGLCVARR--IDEAMDL 310
Query: 220 LCNLVEDGHKLFPSLGQF 237
+ +D + FP++ +
Sbjct: 311 FVKMKDD--ECFPTVRTY 326
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 31/153 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS-DKGFNPPV------------- 156
+M+ P+ +++ L+ C G +R A++ + ++G +P
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKL 809
Query: 157 ---RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTN 200
A ++V+ MI G +P LE+ LI + K GE G D
Sbjct: 810 KKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAW 869
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
KI I V K+ ++ EAF L N++E F S
Sbjct: 870 KIIIDGVGKQGLV-EAFYELFNVMEKNGCKFSS 901
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 34/205 (16%)
Query: 73 EFGKHGLIDNAVE----VFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
E +HGL + + + + C A N + + + + V +G P++RT+T LV
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV-------RGLCPNERTYTTLV 387
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188
+ + G M EA L+E++D GF+P V + ++N G + D I +
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED------AIAVLEDM 441
Query: 189 GELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSLGQFDDAFC-- 242
E GL DV + + + + +DEA R+ +VE G K + SL Q FC
Sbjct: 442 KEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ---GFCEQ 498
Query: 243 --------FFSEMQIKTHPPNRPVY 259
+ EM PP+ Y
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTY 523
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+E MK LS + S ++ F + +D A+ V + + + Y+SL
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 106 -----HVC--FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-- 156
C + M+R G PD+ T+T L+NA+C G + +A + E+ +KG P V
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557
Query: 157 --------------RSAKQMVNKMIKQGSVPDLETFNSLIE 183
R AK+++ K+ + SVP T+++LIE
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 79/229 (34%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F +M KG +P+ T+ L++ +C K+ + + L+ ++ KG P + S ++N
Sbjct: 228 FDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCR 287
Query: 165 -----------------------------------------------KMIKQGSVPDLET 177
+M++ G P + T
Sbjct: 288 EGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVIT 347
Query: 178 FNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224
+ SLI ++CK+G + GLC + T + S++ ++EA+R+L +
Sbjct: 348 YTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMN 407
Query: 225 EDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
++G PS+ G+ +DA +M+ K P+ Y+
Sbjct: 408 DNGFS--PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M+ K PD + I+++ C +G +R+A +E+ GF + +V + K
Sbjct: 628 FESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHK 687
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+G V +L NS+I + +S EL ++ K+ + +E +D +L + +DG
Sbjct: 688 EGKVNEL---NSVIVHVLRSCEL---SEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 40/180 (22%)
Query: 22 ANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLID 81
A I+ D+ A +TL+ +L+ + S+ +T +L S SVF L+++ + + LID
Sbjct: 99 AQILAEDV-AAKTLDDEYASLVFK-SLQETYDLCYSTS-SVF----DLVVKSYSRLSLID 151
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------------MIRKGFVPDKRTHTIL 127
A+ + + A VL YN++ +R M+ P+ T+ IL
Sbjct: 152 KALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNIL 211
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ +C +G + A + +KM +G +P++ T+N+LI+ CK
Sbjct: 212 IRGFCFAGN-------------------IDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 60/252 (23%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM------------ 112
+T +++I G + A+E+ + F C+ ++ YN+L F +
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD 266
Query: 113 IRKGFV--PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
++ G V PD T+T +++ +C +GKMREA L ++ G P
Sbjct: 267 VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
+ +A+++ KMI G PD+ TF SLI+ C+ G++ G+ + T
Sbjct: 327 EMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYS 386
Query: 202 ISIPAVSKEFMIDEAFRLLCNL--------------VEDGHKLFPSLGQFDDAFCFFSEM 247
I I A+ E + +A LL L V DG F G+ ++A EM
Sbjct: 387 ILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDG---FCKAGKVNEANVIVEEM 443
Query: 248 QIKTHPPNRPVY 259
+ K P++ +
Sbjct: 444 EKKKCKPDKITF 455
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 31/163 (19%)
Query: 60 LSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRK 115
L ++P T +++++ + K G + A E+ K +F C V+ + SL C V + +
Sbjct: 306 LGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQ 365
Query: 116 GF-----------VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNP--- 154
GF P+ T++IL+NA C+ ++ +A+E L +L+ K +NP
Sbjct: 366 GFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVID 425
Query: 155 ------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
V A +V +M K+ PD TF LI C G +
Sbjct: 426 GFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N +V M +K PDK T TIL+ C G+M EA ++ G +P + +
Sbjct: 434 NEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSL 493
Query: 163 VNKMIKQGSVPDLETFNSL 181
++ ++K G + N +
Sbjct: 494 LSCLLKAGMAKEAYHLNQI 512
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 39/186 (20%)
Query: 95 CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C++ L ++++ ++I+ G+ PD T + L+N C G++ EA E + + + G P
Sbjct: 120 CRKLSLAFSAMG----KIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV- 197
V A ++++M++ G P+ T+ +++ +CKSG+ L ++
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235
Query: 198 ---NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
KI + AV +ID L +D G D+AF F+EM+IK
Sbjct: 236 RKMEERKIKLDAVKYSIIID-------GLCKD--------GSLDNAFNLFNEMEIKGFKA 280
Query: 255 NRPVYA 260
+ +Y
Sbjct: 281 DIIIYT 286
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RMIR 114
S+II+ K G +DNA +FN+ + +++Y +L C+ MI+
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK 310
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP----------------VRS 158
+ PD + L++ + GK+REA+E +E+ +G +P +
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
A M++ M+ +G P++ TFN LI CK+
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKA 400
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 43/208 (20%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+T +++I + K LID+ +E+F K M +G V D T+
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRK----------------------MSLRGVVADTVTY 425
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD--LETFNSLI 182
L+ +C GK+ A+E QE+ + P + S K +++ + G P+ LE F
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE-PEKALEIF---- 480
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK--------LFPSL 234
E I KS + D+ I I + +D+A+ L C+L G K + L
Sbjct: 481 EKIEKS---KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537
Query: 235 ---GQFDDAFCFFSEMQIKTHPPNRPVY 259
G +A F +M+ H PN Y
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTY 565
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 34/198 (17%)
Query: 22 ANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLID 81
AN + H+I + N+ L ++ +LM S T +I+ K G +
Sbjct: 853 ANTITHNIVISGLVKAGNVD--DALDLY--YDLMSDRDFSPTACTYGPLIDGLSKSGRLY 908
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSL-----------HVC--FVRMIRKGFVPDKRTHTILV 128
A ++F + C+ +YN L C F RM+++G PD +T+++LV
Sbjct: 909 EAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLV 968
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK-----------------QGS 171
+ C G++ E + +EL + G NP V ++N + K +G
Sbjct: 969 DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028
Query: 172 VPDLETFNSLIETICKSG 189
PDL T+NSLI + +G
Sbjct: 1029 TPDLYTYNSLILNLGIAG 1046
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 57/246 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN--------------SLHVCFVR 111
T + +++ +GK G ID E++ + + C+ + +N +L + +
Sbjct: 822 TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDL 881
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M + F P T+ L++ SG++ EA++ + + D G P
Sbjct: 882 MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKI 202
+A + +M+K+G PDL+T++ L++ +C G E GL DV +
Sbjct: 942 ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNL 1001
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQFDDAFCFFSEMQI 249
I + K ++EA +L N ++ + P L G ++A ++E+Q
Sbjct: 1002 IINGLGKSHRLEEAL-VLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060
Query: 250 KTHPPN 255
PN
Sbjct: 1061 AGLEPN 1066
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 66/245 (26%)
Query: 54 LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
L + ++L + P T ++ I G+ G I+ A E+ R
Sbjct: 246 LKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILK----------------------R 283
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------------- 157
M +G PD T+T+L++A C++ K+ A+E +++ G + P R
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK-TGRHKPDRVTYITLLDRFSDNR 342
Query: 158 ---SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
S KQ ++M K G VPD+ TF L++ +CK+G G+ +++T
Sbjct: 343 DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYN 402
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIK 250
I + + +D+A L N+ G K + G A F +M+ K
Sbjct: 403 TLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK 462
Query: 251 THPPN 255
PN
Sbjct: 463 GIAPN 467
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 48/210 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL----------- 105
PDS+ T +++++ + K G ID A+++ ++ C+ V++ NSL
Sbjct: 501 PDSV-----TYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVD 555
Query: 106 --HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
F+RM P T+ L+ +GK++EA E +
Sbjct: 556 EAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE------------------ 597
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
M+++G P+ TFN+L + +CK+ E+ L + + + V F + ++ L
Sbjct: 598 -GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT---IIFGL 653
Query: 224 VEDGHKLFPSLGQFDDAFCFFSEMQIKTHP 253
V++ GQ +A CFF +M+ +P
Sbjct: 654 VKN--------GQVKEAMCFFHQMKKLVYP 675
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 53/188 (28%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
WK MK L T + ++ GK+G I A+E+F
Sbjct: 558 WKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG------------------- 598
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
M++KG P+ T L + C N V A +M+ KM+
Sbjct: 599 ---MVQKGCPPNTITFNTLFDCLCK-------------------NDEVTLALKMLFKMMD 636
Query: 169 QGSVPDLETFNSLIETICKSGEL--GLC----------ADVNTNKISIPAVSKEFMIDEA 216
G VPD+ T+N++I + K+G++ +C D T +P V K +I++A
Sbjct: 637 MGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDA 696
Query: 217 FRLLCNLV 224
++++ N +
Sbjct: 697 YKIITNFL 704
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 64/180 (35%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------------- 157
M + G VPD T TILV+A C +G EA + L + D+G P +
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHR 413
Query: 158 -------------------------------------SAKQMVNKMIKQGSVPDLETFNS 180
SA + KM +G P++ N+
Sbjct: 414 LDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA 473
Query: 181 LIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ ++ K+G ++GL D T + + SK IDEA +LL ++E+G
Sbjct: 474 SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG 533
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 53/201 (26%)
Query: 58 DSLSVFPQTLSLI--IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115
+SL V P + I I+ +GK G +A+E F K M K
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK----------------------MKTK 462
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G P+ + + +G+ REA++ L D G P + A
Sbjct: 463 GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
+++++M++ G PD+ NSLI T+ K+ E+ L V T +
Sbjct: 523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAG 582
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
+ K I EA L +V+ G
Sbjct: 583 LGKNGKIQEAIELFEGMVQKG 603
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 110 VRMIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
+R +R+ GFV + ++ L++ S EA E + + +GF P +++ + M+
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSL---MVG 232
Query: 169 QGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
G D+++ L++ + LGL +V T I I + + I+EA+ +L + ++G
Sbjct: 233 LGKRRDIDSVMGLLKEM---ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGC 289
Query: 229 KLFPSLGQFD---DAFC----------FFSEMQIKTHPPNRPVY 259
P + + DA C F +M+ H P+R Y
Sbjct: 290 G--PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F+++ G +PD T+ L++A+ SGK+ E E +E+S + +++ ++K
Sbjct: 808 FLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVK 867
Query: 169 QGSVPD-LETFNSLIE------TICKSGEL--GLCADVNTNKISIPAVSKEFMIDEAFRL 219
G+V D L+ + L+ T C G L GL + ++ E M+D R
Sbjct: 868 AGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS---KSGRLYEAKQLFEGMLDYGCRP 924
Query: 220 LC---NLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
C N++ +G F G+ D A F M + P+ Y+
Sbjct: 925 NCAIYNILING---FGKAGEADAACALFKRMVKEGVRPDLKTYS 965
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKC-TAFNCQQCVLLYNSL--HVCFVRMI----------- 113
+LII GK ++ A+ +FN+ T+ + YNSL ++ M+
Sbjct: 1000 NLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQ 1059
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
R G P+ T L+ + SGK A Q + GF+P + +Q+ N+
Sbjct: 1060 RAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNR 1111
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 54/265 (20%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC 108
W+T+E +K +SV ++I + K G+ + AVE F + F+C+ V YN +
Sbjct: 112 WQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRV 171
Query: 109 FVR--------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+R M++ P+ T IL++ G+ +AQ+ +++ +G +P
Sbjct: 172 MMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231
Query: 155 ----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL------- 191
A+++ +M G+ PD N+L++ CK G +
Sbjct: 232 NRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELL 291
Query: 192 ------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL------- 234
G + I + + +AF L N+++ K L+ L
Sbjct: 292 RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKA 351
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G+ +DA S M K P+ Y
Sbjct: 352 GKIEDALKLLSSMPSKGISPDTYCY 376
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 37/150 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRM 112
+KPD + +++I+ K G I++A+++ + + YN++ +C +
Sbjct: 334 IKPDII-----LYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGL 388
Query: 113 IRKG-----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
+ +G PD THTIL+ + C +G +REA+E E+
Sbjct: 389 LEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIE------------- 435
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL 191
K G P + TFN+LI+ +CKSGEL
Sbjct: 436 ------KSGCSPSVATFNALIDGLCKSGEL 459
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
G PD ++ +L+N +C +G + A + L L KG +P + ++N + + G
Sbjct: 512 GSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVG 566
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 24/206 (11%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------- 111
++FP TL+++I+ K G + NA+E+F K + V+ YN+L F +
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534
Query: 112 ------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
M+ K +P +++ILVNA CS G + EA E+ K P V M+
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ G+ D E+F +E + G + C NT I +E + +AF L+ + E
Sbjct: 595 YCRSGNASDGESF---LEKMISEGFVPDCISYNT---LIYGFVREENMSKAFGLVKKMEE 648
Query: 226 DGHKLFPSLGQFDD---AFCFFSEMQ 248
+ L P + ++ FC ++M+
Sbjct: 649 EQGGLVPDVFTYNSILHGFCRQNQMK 674
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 27/162 (16%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
KG PD T+ L++A+ S G M EA E + + KGF+P V +
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYER 323
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
AK++ +M++ G PD T+ SL+ CK G++ V T K+ S++ + D
Sbjct: 324 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDV-----VETEKVFSDMRSRDVVPD---- 374
Query: 219 LLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
L+C LF G D A +F+ ++ P+ +Y
Sbjct: 375 LVC--FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------R 157
R G + T I+VNA C GKM + FL ++ +KG P +
Sbjct: 228 RSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLME 287
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAVSKEFMI 213
A +++N M +G P + T+N++I +CK G+ + A++ + +S + + ++
Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 347
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFD---DAFCFFSEMQIKTHPPN 255
EA + ++VE K+F + D D CF S M + T N
Sbjct: 348 MEACK-KGDVVET-EKVFSDMRSRDVVPDLVCFSSMMSLFTRSGN 390
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 49/235 (20%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------- 108
V+P T + +I + GL++ A E+ N V YN++ +C
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA 324
Query: 109 ---FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-- 163
F M+R G PD T+ L+ C G + E ++ ++ + P + M+
Sbjct: 325 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSL 384
Query: 164 --------------NKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCAD 196
N + + G +PD + LI+ C+ G + G D
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP---SLGQFDDAFCFFSEMQ 248
V T + + K M+ EA +L + E LFP +L D C +Q
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTE--RALFPDSYTLTILIDGHCKLGNLQ 497
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LH-VC-----------FVRMIR 114
+++I+ + + G+I A+ + N+ C V+ YN+ LH +C F M
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 473
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--------------GFNP--PVRS 158
+ PD T TIL++ C G ++ A E Q++ +K GF + +
Sbjct: 474 RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDT 533
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
AK++ M+ + +P +++ L+ +C G L
Sbjct: 534 AKEIWADMVSKEILPTPISYSILVNALCSKGHL 566
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 21/167 (12%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
H F + KGF L+ + G + A QE+S G V + MVN
Sbjct: 185 HEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNA 244
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ K G + + TF S ++ E G+ D+ T I A S + +++EAF L+ +
Sbjct: 245 LCKDGKMEKVGTFLSQVQ------EKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM-- 296
Query: 226 DGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G P + G+++ A F+EM P+ Y
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 102 YNSLHVCFVR---------MIRK------GFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146
YN+L FVR +++K G VPD T+ +++ +C +M+EA+ L++
Sbjct: 623 YNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRK 682
Query: 147 LSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+ ++G NP + M+N + Q ++ +
Sbjct: 683 MIERGVNPDRSTYTCMINGFVSQDNLTE 710
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P + S+++ G + A V+++ + N + V++ NS+ + R
Sbjct: 550 PISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLE 609
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--GFNPPV------------ 156
MI +GFVPD ++ L+ + M +A ++++ ++ G P V
Sbjct: 610 KMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCR 669
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLI 182
+ A+ ++ KMI++G PD T+ +I
Sbjct: 670 QNQMKEAEVVLRKMIERGVNPDRSTYTCMI 699
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
V +MI +G PD+ T+T ++N + S + EA E+ +GF+P
Sbjct: 677 EVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN----- 103
W I+LMK ++ + +T +++I + + GL AV FN+ + C + ++
Sbjct: 171 WHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISN 230
Query: 104 -------SLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
S F ++ F PD +T LV WC +G++ EA++ +E+ G P V
Sbjct: 231 LSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNV 290
Query: 157 RS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A + M+ G P+ TFN+L+ K+G
Sbjct: 291 YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAG 339
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 46/214 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL---HV----------CFVRM 112
T S++I+ + G I A +VF C + +N+L HV + +M
Sbjct: 292 TYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQM 351
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ-------ELSDKGFNP---------PV 156
+ G PD T+ L+ A C + A + L E++ FN V
Sbjct: 352 KKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDV 411
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT---NKISIPAVSKEFMI 213
A +M +KM++ P+ T+N L+ S + + +K P V+
Sbjct: 412 NGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVN----- 466
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEM 247
+RLL +F +G +++A+ F EM
Sbjct: 467 --TYRLLVT-------MFCGMGHWNNAYKLFKEM 491
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 31/171 (18%)
Query: 58 DSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR---- 111
D +SV P T + I+ G + A+EV ++ +C V+ Y L R
Sbjct: 196 DRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255
Query: 112 ---------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
M +G PD T+ +LVN C G++ EA +FL ++ G P V
Sbjct: 256 GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315
Query: 157 -RS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
RS A++++ M+++G P + TFN LI +C+ G LG D+
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV-------------RM 112
T +++I + GL+ A+++ K CQ L YN L F RM
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ +G PD T+ ++ A C GK+ +A E L +LS KG +P + + +++ + K G
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465
Query: 173 ----------------PDLETFNSLIETICKSGEL 191
PD T++SL+ + + G++
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 36/203 (17%)
Query: 21 IANIVRH----DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGK 76
+ N+V H DI TL R L K +E+++ T +++I + K
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184
Query: 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRT 123
G I+NA+ V ++ + V+ YN++ +C RM+++ PD T
Sbjct: 185 AGEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVIT 241
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV----------- 172
+TIL+ A C + A + L E+ D+G P V + +VN + K+G +
Sbjct: 242 YTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 301
Query: 173 -----PDLETFNSLIETICKSGE 190
P++ T N ++ ++C +G
Sbjct: 302 SSGCQPNVITHNIILRSMCSTGR 324
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 62/235 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++++ K G +D A++ N + CQ P+ TH
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ----------------------PNVITHN 313
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----------------KMIKQ 169
I++ + CS+G+ +A++ L ++ KGF+P V + ++N KM +
Sbjct: 314 IILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQH 373
Query: 170 GSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEA 216
G P+ ++N L+ CK ++ G D+ T + A+ K+ +++A
Sbjct: 374 GCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDA 433
Query: 217 FRLLCNLVEDG--------HKLFPSL---GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+L L G + + L G+ A EM+ K P+ Y+
Sbjct: 434 VEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYS 488
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS--LHVCFVR- 111
+KPD++ T S ++ + G +D A++ F++ + + +NS L +C R
Sbjct: 480 LKPDTI-----TYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQ 534
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
MI +G P++ ++TIL+ G +EA E L EL +KG SA+Q
Sbjct: 535 TDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK-SSAEQ 593
Query: 162 MVNKM 166
+ KM
Sbjct: 594 VAGKM 598
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 48/212 (22%)
Query: 45 ELSMWKTIE-LMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101
E M + IE L + S +P T + ++ K G +++AVE+ N+ ++ C ++
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT 451
Query: 102 YNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148
YN++ + M K PD T++ LV GK+ EA +F E
Sbjct: 452 YNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
Query: 149 DKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV----------- 197
+ G P+ TFNS++ +CKS + D
Sbjct: 512 -------------------RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKP 552
Query: 198 --NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227
+ I I ++ E M EA LL L G
Sbjct: 553 NETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
M+ G VPD T L+ +C GK R+A + L+ L G+
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG-------------------SGA 168
Query: 172 VPDLETFNSLIETICKSGEL 191
VPD+ T+N +I CK+GE+
Sbjct: 169 VPDVITYNVMISGYCKAGEI 188
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 91/232 (39%), Gaps = 62/232 (26%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127
S+II+ KHG +DNA +FN+ M KG + T+ IL
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNE----------------------MEMKGITTNIITYNIL 304
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGS 171
+ +C++G+ + + L+++ + NP V R A+++ +MI +G
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 364
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
PD T+ SLI+ CK L G ++ T I I K ID+
Sbjct: 365 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLE 424
Query: 219 L-----LCNLVEDGHKL------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L L +V D F LG+ + A F EM + PPN Y
Sbjct: 425 LFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 39/185 (21%)
Query: 95 CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
C++ L ++++ ++I+ G+ P+ T + L+N C G++ EA E + + + G P
Sbjct: 136 CRKLCLAFSAMG----KIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 191
Query: 155 PVRSAKQMVN----------------KMIKQGSVPDLETFNSLIETICKSGELGLCADV- 197
+ + +VN KM++ G P+ T+ ++ +CKSG+ L ++
Sbjct: 192 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 251
Query: 198 ---NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPP 254
I + AV +ID LC H G D+AF F+EM++K
Sbjct: 252 RKMEERNIKLDAVKYSIIIDG----LCK-----H------GSLDNAFNLFNEMEMKGITT 296
Query: 255 NRPVY 259
N Y
Sbjct: 297 NIITY 301
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 41/222 (18%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109
+ ++LM +T +++I + K ID+ +E+F K
Sbjct: 389 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK-------------------- 428
Query: 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169
M +G V D T+ L+ +C GK+ A+E QE+ + P + + K +++ +
Sbjct: 429 --MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 486
Query: 170 G-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL----V 224
G S LE F E I KS + D+ I I + +D+A+ L C+L V
Sbjct: 487 GESEKALEIF----EKIEKS---KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGV 539
Query: 225 EDGHKLFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ G K + + G +A F +M+ H P+ Y
Sbjct: 540 KPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTY 581
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 32/138 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++++ +G + A+E+F K + + +YN + +C F +
Sbjct: 475 TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 534
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG P +T+ I++ C G P+ A+ + KM + G
Sbjct: 535 PLKGVKPGVKTYNIMIGGLCKKG-------------------PLSEAELLFRKMEEDGHA 575
Query: 173 PDLETFNSLIETICKSGE 190
PD T+N LI G+
Sbjct: 576 PDGWTYNILIRAHLGDGD 593
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 83 AVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142
V+ +N C++ L + + F +M G PD T+ IL+ A G ++ +
Sbjct: 542 GVKTYNIMIGGLCKKGPL--SEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVK 599
Query: 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
++EL GF+ + K MV M+ G +
Sbjct: 600 LIEELKRCGFSVDASTIK-MVIDMLSDGRL 628
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-------FVRMIRK- 115
T + +I+ K G +D+A E+ ++ Q + YNS+ +C V+++ +
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
G D T+T L++A+C SG+M +AQE L+E+ KG P +
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
++++N M+ +G P+ TFNSL++ C
Sbjct: 578 EDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVN 129
+IE + GL N+ ++ C+ C L F MIR+G +PD +T L++
Sbjct: 303 LIEVMKRKGLKPNSY-IYGSIIGLLCRICKL--AEAEEAFSEMIRQGILPDTVVYTTLID 359
Query: 130 AWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIKQGSVP 173
+C G +R A +F E+ + P V + A ++ ++M +G P
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP 419
Query: 174 DLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLL 220
D TF LI CK+G + G +V T I + KE +D A LL
Sbjct: 420 DSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 479
Query: 221 CNLVEDG 227
+ + G
Sbjct: 480 HEMWKIG 486
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T ++ EF + G+ N V +N F CQ + H + M KG+ PD +++
Sbjct: 229 TAIIVFREFPEVGVCWN-VASYNIVIHFVCQLGRI--KEAHHLLLLMELKGYTPDVISYS 285
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
+VN +C G++ + + ++ + KG P + A++ ++MI+Q
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 170 GSVPDLETFNSLIETICKSGELGLCA----DVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
G +PD + +LI+ CK G++ + ++++ I+ P V I F + ++VE
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDIT-PDVLTYTAIISGFCQIGDMVE 404
Query: 226 DG---HKLF 231
G H++F
Sbjct: 405 AGKLFHEMF 413
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 20/139 (14%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171
MI+ G P+ T+T L++ C G + A E L E+ G P + + +VN + K G+
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 172 V----------------PDLETFNSLIETICKSGELGLCADVNTNKISI---PAVSKEFM 212
+ D T+ +L++ CKSGE+ ++ + P + +
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 566
Query: 213 IDEAFRLLCNLVEDGHKLF 231
+ F L ++EDG KL
Sbjct: 567 LMNGF-CLHGMLEDGEKLL 584
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 39/184 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFN---------KCTAFNC---QQCVLLYNSLHVC---FV 110
T ++++ F HG++++ ++ N T FN Q C+ N+L +
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI--RNNLKAATAIYK 620
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
M +G PD +T+ LV C + M+EA QE+ KGF+ V +
Sbjct: 621 DMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A+++ ++M ++G D E F+ +T K D I + + +++D
Sbjct: 681 KFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVD------PIDEIIENYLVD 734
Query: 215 EAFR 218
E R
Sbjct: 735 EQLR 738
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 42/201 (20%)
Query: 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGF 117
++ +G+ G + AV VF + ++C+ V YN++ H ++RM +G
Sbjct: 83 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQ 161
PD + TI + ++C + + A L +S +G V + +
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYE 202
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVS 208
+ KM+ G L TFN L+ +CK G++ G+ ++ T + I +
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262
Query: 209 KEFMIDEAFRLLCNLVEDGHK 229
+ +D A R++ L+E G K
Sbjct: 263 QRGELDGAVRMVGCLIEQGPK 283
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 35/157 (22%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK------ 165
MI KG+ PD T IL++ + + KM A E L + D G +P V + ++N
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSK 511
Query: 166 ----------MIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEF 211
M+++G P+L TFN L+E++C+ + LGL ++ ++ AV+
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571
Query: 212 MIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248
+ID F G D A+ F +M+
Sbjct: 572 LIDG---------------FCKNGDLDGAYTLFRKME 593
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 29/141 (20%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSA 159
GFVPD+ T+ L++ C G+ A E KG P V A
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
Q+ N+M ++G +P+++TFN L+ +CK G G D+ T I I
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
S + ++ A +L ++++G
Sbjct: 471 YSTQLKMENALEILDVMLDNG 491
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 45/195 (23%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT-AFNCQQCVLLYN------- 103
+E MK S++ T +I+ F K+G +D A +F K A+ YN
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFT 613
Query: 104 -SLHVC-----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-- 155
L+V F M+ + PD T+ ++V+ +C +G + +FL E+ + GF P
Sbjct: 614 EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLT 673
Query: 156 --------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNK 201
V A ++++M+++G VP+ + TIC DV+ +
Sbjct: 674 TLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE------AVNTIC---------DVDKKE 718
Query: 202 ISIPAVSKEFMIDEA 216
++ P + E ++ ++
Sbjct: 719 VAAPKLVLEDLLKKS 733
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 49/206 (23%)
Query: 61 SVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------------- 105
V P T +L I+ + G +D AV + + V+ YN+L
Sbjct: 246 GVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
V +M+ +G PD T+ L+ +C G V+ A+++V
Sbjct: 306 EVYLGKMVNEGLEPDSYTYNTLIAGYCKGGM-------------------VQLAERIVGD 346
Query: 166 MIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFM 212
+ G VPD T+ SLI+ +C GE G+ +V I +S + M
Sbjct: 347 AVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGM 406
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFD 238
I EA +L + E G L P + F+
Sbjct: 407 ILEAAQLANEMSEKG--LIPEVQTFN 430
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 34/148 (22%)
Query: 59 SLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC------ 108
S FP T +++I + ++NA+E+ + V YNSL +C
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFE 513
Query: 109 -----FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV 163
+ M+ KG P+ T IL+ + C K+ EA L+E+ +K N
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVN---------- 563
Query: 164 NKMIKQGSVPDLETFNSLIETICKSGEL 191
PD TF +LI+ CK+G+L
Sbjct: 564 ---------PDAVTFGTLIDGFCKNGDL 582
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 29/148 (19%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV---CFVR----------MIRKG 116
II+ K GL+++AVE+F++ + + YNSL C R M+ +
Sbjct: 180 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 239
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
VP+ T T +++ + GK EA + +E++ + +P V + AK
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 299
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKS 188
QM++ M+ +G +PD+ T+N+LI CKS
Sbjct: 300 QMLDLMVTKGCLPDVVTYNTLINGFCKS 327
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--------------- 155
+M++ G+ PD T + L+N +C ++ +A + + ++ + GF P
Sbjct: 129 KMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188
Query: 156 -VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA---------DVNTNKISIP 205
V A ++ ++M + G D T+NSL+ +C SG A D+ N I+
Sbjct: 189 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 248
Query: 206 AVSKEFMIDEAFRLLCNLVED 226
AV F+ + F L E+
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEE 269
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 39/201 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T + +I HG +D A ++ + C V+ YN+L C F M
Sbjct: 281 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 340
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------------FNPPVRSA 159
++G V D T+ ++ + +G+ AQE + + N V A
Sbjct: 341 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKA 400
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPA 206
+ M K D+ T+N +I +CK G + GL DV + I
Sbjct: 401 LVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG 460
Query: 207 VSKEFMIDEAFRLLCNLVEDG 227
++ D++ L + EDG
Sbjct: 461 FCRKRQWDKSDLLYRKMQEDG 481
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAK 160
L++ + VC G D ++ I++N C + A + ++ G+ P V +
Sbjct: 91 LFHHMEVC-------GIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVS 143
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
++N + V D I+ + K E+G DV I K ++++A L
Sbjct: 144 SLINGFCQGNRVFDA------IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELF 197
Query: 221 CNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
+ DG + + SL G++ DA +M ++ PN
Sbjct: 198 DRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPN 243
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 53/257 (20%)
Query: 22 ANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTL-SLIIEEFGKHGLI 80
+ ++RHD + ++ L +S+L+ + I L P+ + + + ++IE +GK G++
Sbjct: 143 SGLIRHDRDTHMKMIKM-LGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGIV 201
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTIL 127
+V++F K ++ + YNSL +R M+ +G P + T+ ++
Sbjct: 202 QESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLM 261
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ + S ++ A F +++ +G + PD TFN++I C+
Sbjct: 262 LWGFFLSLRLETALRFFEDMKTRGIS-------------------PDDATFNTMINGFCR 302
Query: 188 SGELG----LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCF 243
++ L ++ NKI VS MI K + ++ + DD
Sbjct: 303 FKKMDEAEKLFVEMKGNKIGPSVVSYTTMI---------------KGYLAVDRVDDGLRI 347
Query: 244 FSEMQIKTHPPNRPVYA 260
F EM+ PN Y+
Sbjct: 348 FEEMRSSGIEPNATTYS 364
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MI 113
+ +I ++G ID E + K + Q ++LYN+L F + MI
Sbjct: 348 FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407
Query: 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP 173
R+G PDK T+T L++ +C G + A E +E+ G +V M K+G V
Sbjct: 408 RRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVI 467
Query: 174 DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
D E +L E + G+ D T + + A K+ F+LL + DGH PS
Sbjct: 468 DAE--RALREML----RAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH--VPS 519
Query: 234 LGQFD---DAFCFFSEMQ 248
+ ++ + C +M+
Sbjct: 520 VVTYNVLLNGLCKLGQMK 537
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 29/154 (18%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKGF------- 117
++++ +F K G I +A +VF++ T + Q V+ +N+L C V + +GF
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302
Query: 118 ----VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVR 157
PD T++ L+NA C KM A E+ +G N +
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
K+ KM+ +G PD+ +N+L+ CK+G+L
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDL 396
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 40/197 (20%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------ 156
+ H F M ++G +P+ T L++ +G++ +E Q++ KG P +
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTL 386
Query: 157 ----------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKI 202
+A+ +V+ MI++G PD T+ +LI+ C+ G+ L + +++ N I
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGI 446
Query: 203 SIPAVS---------KEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFC 242
+ V KE + +A R L ++ G K F G F
Sbjct: 447 ELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFK 506
Query: 243 FFSEMQIKTHPPNRPVY 259
EMQ H P+ Y
Sbjct: 507 LLKEMQSDGHVPSVVTY 523
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 46/187 (24%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFV---- 110
++PD + T + +I+ F + G ++ A+E+ + + + +++L VC +
Sbjct: 411 LRPDKI-----TYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSAL-VCGMCKEG 464
Query: 111 ----------RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---- 156
M+R G PD T+T++++A+C G + + L+E+ G P V
Sbjct: 465 RVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYN 524
Query: 157 ------------RSAKQMVNKMIKQGSVPDLETFNSLIET----------ICKSGELGLC 194
++A +++ M+ G VPD T+N+L+E + E+G+
Sbjct: 525 VLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIGIV 584
Query: 195 ADVNTNK 201
AD+ + K
Sbjct: 585 ADLASYK 591
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
++ ++ GF + IL+N +C G + +AQ+ E++ + P V S ++N K
Sbjct: 228 YMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCK 287
Query: 169 QGSV----------------PDLETFNSLIETICKSGEL 191
G++ PD+ T+++LI +CK ++
Sbjct: 288 VGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKM 326
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 33/238 (13%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
++W I M+ + P+T +++ E + G D AV++F C Q + +N++
Sbjct: 109 TVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTIL 168
Query: 107 --VC----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154
+C R +R F D T+ +++N WC + +A E L+E+ ++G NP
Sbjct: 169 DVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINP 228
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
+ + M+ + G + F +E + E+ DV T + I
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEF--FLEMKKRDCEI----DVVTYTTVVHGFGVAGEIK 282
Query: 215 EAFRLLCNLVEDGHKLFPSLGQF-------------DDAFCFFSEMQIKTHPPNRPVY 259
A + ++ +G + PS+ + ++A F EM + + PN Y
Sbjct: 283 RARNVFDEMIREG--VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTY 338
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 49 WKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--- 105
W+ MK + T + ++ FG G I A VF++ V YN++
Sbjct: 250 WEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQV 309
Query: 106 ----------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
V F M+R+G+ P+ T+ +L+ +G+ +E +Q + ++G P
Sbjct: 310 LCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPN 369
Query: 156 VRSAKQMVN----------------KMIKQGSVPDLETFNSLI 182
++ M+ KM +P+L+T+N LI
Sbjct: 370 FQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILI 412
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 32/139 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +++ F + G I +A E F + +C+ V+ Y ++ F M
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
IR+G +P T+ ++ C V +A M +M+++G
Sbjct: 292 IREGVLPSVATYNAMIQVLCKKDN-------------------VENAVVMFEEMVRRGYE 332
Query: 173 PDLETFNSLIETICKSGEL 191
P++ T+N LI + +GE
Sbjct: 333 PNVTTYNVLIRGLFHAGEF 351
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 34/165 (20%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------- 105
+KPD T + II K G++D A E+ C+ V+ YN L
Sbjct: 259 LKPDMF-----TYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Query: 106 ----HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS--- 158
+M + P+ T++IL+ C GK+ EA L+ + +KG P S
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 159 -------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A + + MI G +PD+ +N+++ T+CK+G+
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 38/129 (29%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
RM K F PD T+ I++ + CS GK+ A + L +L P V +
Sbjct: 183 RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMID 214
A +++++M+ +G PD+ T+N++I +CK G M+D
Sbjct: 243 GVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG----------------------MVD 280
Query: 215 EAFRLLCNL 223
AF ++ NL
Sbjct: 281 RAFEMVRNL 289
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 43/189 (22%)
Query: 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNS--------------LHVCFVRMIRKGFVPDK 121
K+G D A+E+F K C YN+ LH+ + M+ G PD+
Sbjct: 415 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM-ILEMMSNGIDPDE 473
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNK 165
T+ +++ C G + EA E L ++ F+P V A ++
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLES 533
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
M+ G P+ T+ LIE I +G ++ + + I A+S + +F+ L
Sbjct: 534 MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAIS-----EYSFKRL----- 583
Query: 226 DGHKLFPSL 234
H+ FP L
Sbjct: 584 --HRTFPLL 590
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 60/188 (31%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111
++LMK L+ + +I F + G +D A+E
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET---------------------- 393
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
MI G +PD + ++ C +GK +A E +L + G +P S
Sbjct: 394 MISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGD 453
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
A M+ +M+ G PD T+NS+I +C+ G M+DE
Sbjct: 454 KIRALHMILEMMSNGIDPDEITYNSMISCLCREG----------------------MVDE 491
Query: 216 AFRLLCNL 223
AF LL ++
Sbjct: 492 AFELLVDM 499
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 23/155 (14%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLET 177
PD + L+N +C ++ +A L + K F+P + M+ + +G + L+
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--- 234
N L+ C+ V T I I A E +DEA +L+ ++ G K P +
Sbjct: 216 LNQLLSDNCQ-------PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK--PDMFTY 266
Query: 235 ----------GQFDDAFCFFSEMQIKTHPPNRPVY 259
G D AF +++K P+ Y
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISY 301
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 28/123 (22%)
Query: 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---------------KMIKQGSVPDLE 176
C SG E+ L+ + KG+NP V +++ +++++ PD+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159
Query: 177 TFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223
+N+LI CK + D T I I ++ +D A ++L L
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 224 VED 226
+ D
Sbjct: 220 LSD 222
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 58/256 (22%)
Query: 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----- 111
PD +S + +I F K G D A +++ V+ YNS+ +
Sbjct: 194 PDVVSY-----TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248
Query: 112 --------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----- 158
M++ G +PD T+ +++ +CSSG+ +EA FL+++ G P V +
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLM 308
Query: 159 -----------AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLC 194
A+++ + M K+G P++ T+ +L++ G L G+
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368
Query: 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCF 243
D I I A +K+ +D+A + + + G + G+ +DA +
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428
Query: 244 FSEMQIKTHPPNRPVY 259
F +M + P VY
Sbjct: 429 FEQMIDEGLSPGNIVY 444
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 62/254 (24%)
Query: 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
+ M ++LM + + S++I + K G +D A+ VF+K + Y ++
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412
Query: 106 -------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG- 151
+ F +MI +G P + L++ C+ K A+E + E+ D+G
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472
Query: 152 ------FNPPVRS---------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
FN + S ++++ M++ G P++ T+N+LI C +G++
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM----- 527
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFS 245
DEA +LL +V G K + + + +DA F
Sbjct: 528 -----------------DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 570
Query: 246 EMQIKTHPPNRPVY 259
EM+ P+ Y
Sbjct: 571 EMESSGVSPDIITY 584
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G PD ++T ++N + G +A E+ D+G P V + A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMID 214
+++N M+K G +PD T+NS++ C SG+ +G + ++ + V+ ++D
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 29/144 (20%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
F M+R G P+ T+ L+N +C +GKM EA + L + G P + ++N
Sbjct: 499 FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCK 558
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKS-------------GELGLCADVNT 199
+M G PD+ T+N +++ + ++ E G +++T
Sbjct: 559 ISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 618
Query: 200 NKISIPAVSKEFMIDEAFRLLCNL 223
I + + K + D+A ++ NL
Sbjct: 619 YNIILHGLCKNKLTDDALQMFQNL 642
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Query: 109 FVRMIRKG---FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN------PPV--- 156
+ RM R G PD T+ IL+ C +G++ L + KGF P+
Sbjct: 72 YNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 131
Query: 157 -----RSAKQM---VNKMIKQGSVPDLETFNSLIETIC 186
R++ M + +M + G +P++ ++N L++ +C
Sbjct: 132 LCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLC 169
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 52/200 (26%)
Query: 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-LHVC-------------FVRM 112
S +I +G+ GL + A+ VFN + + ++ YN+ + C F M
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G PD+ T L+ A CS G + EA L + +M N+ I+Q
Sbjct: 331 QRNGVQPDRITFNSLL-AVCSRGGLWEAARNLFD--------------EMTNRRIEQ--- 372
Query: 173 PDLETFNSLIETICKSGELGLC----ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
D+ ++N+L++ ICK G++ L A + +I VS +ID
Sbjct: 373 -DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDG------------- 418
Query: 229 KLFPSLGQFDDAFCFFSEMQ 248
F G+FD+A F EM+
Sbjct: 419 --FAKAGRFDEALNLFGEMR 436
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 74 FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPD 120
+ K G + A+++ + + ++ V+ YN+L F M R+ +P+
Sbjct: 454 YTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPN 513
Query: 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPPVRSAKQMVN 164
T++ L++ + G +EA E +E G N V SA +++
Sbjct: 514 LLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLID 573
Query: 165 KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIP 205
+M K+G P++ T+NS+I+ +S + AD +N S+P
Sbjct: 574 EMTKEGISPNVVTYNSIIDAFGRSATMDRSADY-SNGGSLP 613
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 45/230 (19%)
Query: 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105
++W IE M+ + + P+ +++ F ++ AVEV ++ + + ++ L
Sbjct: 149 AVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCL 208
Query: 106 HVCFVRM------------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ +R+ F P+ R T L+ WC GK+ EA+E L ++ + G
Sbjct: 209 LDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLE 268
Query: 154 PPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------- 190
P + A ++N M K+G P++ + LI+ +C++ +
Sbjct: 269 PDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMR 328
Query: 191 -------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233
G AD+ T I K MID+ + +L ++ + G + PS
Sbjct: 329 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKG--VMPS 376
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 31/163 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-------------FVRM 112
T + +I F K G+ID V + + Y + V +M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG-- 170
R+G PD + +++ C G+++EA E+ G +P V + M+N QG
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFL 463
Query: 171 ----------------SVPDLETFNSLIETICKSGELGLCADV 197
S P T SL+ + + +L + DV
Sbjct: 464 IEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 42/204 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRM----------- 112
T S +I+ +GK G + A + +N+ + ++ YNSL +C +
Sbjct: 256 TFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVL 315
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ KGF P+ T+ L+N +C + ++ + + L +S G +
Sbjct: 316 VSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKF 375
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG-------------LCADVNTNKIS 203
+A++++ +M+ G PD+ TFN L++ +C G++G + T I
Sbjct: 376 SAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNII 435
Query: 204 IPAVSKEFMIDEAFRLLCNLVEDG 227
I + K +++A+ L C+L G
Sbjct: 436 IKGLCKADKVEDAWYLFCSLALKG 459
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 51/187 (27%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-------------CFVRMIRKG 116
II+ + G ++ A++V + V+ YNSL M+R G
Sbjct: 190 IIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMG 249
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AK 160
PD T + L++ + G++ EA++ E+ + NP + + AK
Sbjct: 250 ISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAK 309
Query: 161 QMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
+++N ++ +G P+ T+N+LI CK+ +D+ ++L
Sbjct: 310 KVLNVLVSKGFFPNAVTYNTLINGYCKAKR----------------------VDDGMKIL 347
Query: 221 CNLVEDG 227
C + DG
Sbjct: 348 CVMSRDG 354
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 35/172 (20%)
Query: 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------- 154
C +M++ GF P T LVN +C + EA + ++ G+ P
Sbjct: 136 CLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLC 195
Query: 155 ---PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA----DVNTNKISIPAV 207
V +A ++ M K G PD+ T+NSLI + SG G+ A D+ IS +
Sbjct: 196 EKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVI 255
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ +ID ++ GQ +A ++EM ++ PN Y
Sbjct: 256 TFSALID---------------VYGKEGQLLEAKKQYNEMIQRSVNPNIVTY 292
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------A 159
G D + T L++ +C ++ A L ++ GF P + + A
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
+V++++ G P++ +N++I+++C+ G++ DV
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDV 206
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 44/211 (20%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN----------SLHVC---FV 110
P ++++ + K GL++ VF + V+ N + C +
Sbjct: 166 PVVFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYS 225
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M R G P+ T IL N +C+ RE +FL+++ ++GF P + + +V+ ++G
Sbjct: 226 VMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRG 285
Query: 171 S----------------VPDLETFNSLIETICKSGEL-------------GLCADVNTNK 201
VPDL T+ SLI+ +CK G + G+ D +
Sbjct: 286 RLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYN 345
Query: 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
I A KE M+ ++ +LL ++ G+ + P
Sbjct: 346 TLIYAYCKEGMMQQSKKLLHEML--GNSVVP 374
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
H F RM+ +G PD ++ L+ A+C G M+++++ L E+ P + K +V
Sbjct: 326 HQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEG 385
Query: 166 MIKQGSVPDLETFNSLIE 183
+++G + L N ++E
Sbjct: 386 FVREGRL--LSAVNFVVE 401
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFG---KHGLIDNAVEVFNKCT 91
L RL + + E+ + + L + L IIEE G K +N +E ++C
Sbjct: 402 LRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCD 461
Query: 92 AFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151
A ++ ++L L + V D +T+ L+ C G+ REA+ + E+ D
Sbjct: 462 AI--EEALVLKGKLK-------NQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSE 512
Query: 152 FNPP----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
P A+++++ + + D E++NSL++ +C++G
Sbjct: 513 VKPDSFICGALVYGYCKELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCETG 566
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------- 164
M+ +G + D +T+T+L+N + K+ +A+E +E+ KG P V S ++N
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 165 ---------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDE 215
+M+++G P++ +N L+ C+SGE+ ++ +++S+ + +
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL-LDEMSVKGLHPNAVT-- 699
Query: 216 AFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
C ++ DG + G +AF F EM++K P+ VY
Sbjct: 700 ----YCTII-DG---YCKSGDLAEAFRLFDEMKLKGLVPDSFVY 735
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T ++++ K+ +D+A E+F + V Y L F
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+ +G P+ + +L+ +C SG++ +A+E L E+S KG +P
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
+ A ++ ++M +G VPD + +L++ C+
Sbjct: 713 LAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 28/160 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
+ ++I F K G + A +F++ V++YN L F R M
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI----- 167
KG P+ T+ +++ +C SG + EA E+ KG P +V+
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV 748
Query: 168 ----------KQGSVPDLETFNSLIETICKSGELGLCADV 197
K+G FN+LI + K G+ L +V
Sbjct: 749 ERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEV 788
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 67/265 (25%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
MK ++ + P T +++ G +D A + + A C+ V++Y +L F++
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV----- 156
M +G PD + L+ + +M EA+ FL E+ + G P
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527
Query: 157 ---------------RSAKQM---------------VNKMIKQGSVPDL-ETFNSLIETI 185
+ K+M +N+ K+G V + + S+++
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQ- 586
Query: 186 CKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG-----------HKLFPSL 234
G+ D T + + + K +D+A + + G F L
Sbjct: 587 ------GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL 640
Query: 235 GQFDDAFCFFSEMQIKTHPPNRPVY 259
G A F EM + PN +Y
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIY 665
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 62/248 (25%)
Query: 54 LMKPDSLSVF--PQTLSLIIEEFGK-----------HGLIDNAVEVFNKCTAFNCQQCVL 100
L++ DSL V T SL+I+ K H ++ + + + K ++C CV+
Sbjct: 300 LVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINI--KPYMYDCCICVM 357
Query: 101 ----LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
+ F MI G +P + + L+ +C +R+ E L E
Sbjct: 358 SKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVE---------- 407
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG---------LCADVNTNKISIPAV 207
M K+ V T+ ++++ +C SG+L + + N + +
Sbjct: 408 ---------MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458
Query: 208 SKEFM----IDEAFRLLCNLVEDG--------HKLFPSLGQ---FDDAFCFFSEMQIKTH 252
K F+ +A R+L + E G + L L + D+A F EM
Sbjct: 459 IKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGL 518
Query: 253 PPNRPVYA 260
PN Y
Sbjct: 519 KPNAFTYG 526
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 34/165 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK---------- 115
T +++I+ K G ++ A E+F++ N V+ Y SL + +M R+
Sbjct: 807 TYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEA 866
Query: 116 ---GFVPDKRTHTILVNAWCSSGKMREA-----QEFLQELSDKGFNPPVRS--------- 158
G PD +++++NA+ G +A Q F + D G + +
Sbjct: 867 IAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFA 926
Query: 159 -------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
A++++ M++ +PD T LI C S + AD
Sbjct: 927 KVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEAD 971
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 61/292 (20%)
Query: 25 VRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSL--SVFPQ--TLSLIIEEFGKHGLI 80
+R D++ +L ++ + W + D L + P T + +I+ F K G +
Sbjct: 271 IRPDVFTYSSL----ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRMIRKGFVPDKRTHTIL 127
A ++F++ + ++ YNSL F M+ K +PD T+ L
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386
Query: 128 VNAWCSSGKMREAQEFLQELSDKG---------------FNPPVRSAKQMVNK-MIKQGS 171
+N +C + K+ + E +++S +G F QMV K M+ G
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446
Query: 172 VPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFR 218
P++ T+N+L++ +CK+G+L + D+ T I + K +++ +
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506
Query: 219 LLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L C+L G K F G ++A+ F +M+ P+ Y
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 35/170 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
+M++ G+ P T L+N +C ++ EA + ++ + G+ P
Sbjct: 125 KMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHN 184
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKE 210
A +V +M+ +G PDL T+ ++I +CK GE L L + KI V
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID LC DDA F+EM K P+ Y+
Sbjct: 245 TVIDS----LCKYR-----------HVDDALNLFTEMDNKGIRPDVFTYS 279
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV-----CFVRM 112
T +I K G D A+ + NK + V++Y+++ HV F M
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG PD T++ L++ C+ G+ +A L ++ ++ NP V +
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETIC 186
A+++ ++MI++ P++ T+NSLI C
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFC 356
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 29/161 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I F + DNA VF + + ++ YN+L V F +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+ PD T+ I+ C +GK+ + + LS KG P V + M++
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGELGLCADV 197
KM + G +PD T+N+LI + G+ A++
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 577
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
+S ++E K G I+ A+ + + F + +YN+L + F RM
Sbjct: 334 AVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRM 393
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G P+ T++IL++ +C GK+ A FL E+ D G V ++N K G +
Sbjct: 394 GKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDI 453
Query: 173 PDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232
E F + E I K E V T + + I++A RL + G + P
Sbjct: 454 SAAEGF--MAEMINKKLE----PTVVTYTSLMGGYCSKGKINKALRLYHEMT--GKGIAP 505
Query: 233 SL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
S+ G DA F+EM PNR Y
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTY 545
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 62/234 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T + ++ + GLI +AV++FN+ +N + P++ T+
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVK----------------------PNRVTYN 546
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETF------- 178
+++ +C G M +A EFL+E+++KG P S + +++ + G + + F
Sbjct: 547 VMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKG 606
Query: 179 ---------NSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEA--------- 216
L+ C+ G+ L +C ++ + + V +ID +
Sbjct: 607 NCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLF 666
Query: 217 FRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVY 259
F LL + + G K ++ S+ G F +AF + M + PN Y
Sbjct: 667 FGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 24/113 (21%)
Query: 96 QQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
Q+ V L+N+ I KG + + T+ +L+ +C G++ EA E + + G +P
Sbjct: 770 QKAVELHNA--------ILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPD 821
Query: 156 ----------------VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
V+ A ++ N M ++G PD +N+LI C +GE+G
Sbjct: 822 CITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMG 874
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 40/185 (21%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-- 172
K PD T+ LV C + E + E+ F+P + +V + K+G +
Sbjct: 291 KDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEE 350
Query: 173 --------------PDLETFNSLIETICKS-------------GELGLCADVNTNKISIP 205
P+L +N+LI+++CK G++GL + T I I
Sbjct: 351 ALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILID 410
Query: 206 AVSKEFMIDEAFRLLCNLVEDGHKL--FP---------SLGQFDDAFCFFSEMQIKTHPP 254
+ +D A L +V+ G KL +P G A F +EM K P
Sbjct: 411 MFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEP 470
Query: 255 NRPVY 259
Y
Sbjct: 471 TVVTY 475
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-----KM 166
MI +G VP++ T+T ++N C +G + EA+ ++ PV S V +
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQ------PVSSVPNQVTYGCFLDI 761
Query: 167 IKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226
+ +G V D++ L I K GL A+ T + I ++ I+EA L+ ++ D
Sbjct: 762 LTKGEV-DMQKAVELHNAILK----GLLANTATYNMLIRGFCRQGRIEEASELITRMIGD 816
Query: 227 G 227
G
Sbjct: 817 G 817
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M KG P T T L++ +G +R+A + E+++ P
Sbjct: 498 MTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGD 557
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
+ A + + +M ++G VPD ++ LI +C +G+
Sbjct: 558 MSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ 592
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 56/250 (22%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-- 104
+MW+ ++ M D +T +L+I G+ GL AV F K FN + YN+
Sbjct: 167 AMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAIL 226
Query: 105 -----------LHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ + +M+ GF PD T+ IL+ GKM E++ GF+
Sbjct: 227 NSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFS 286
Query: 154 P-----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196
P P+ +A +N M + G P + + +LI+ + ++G L C
Sbjct: 287 PDSYTYNILLHILGKGNKPL-AALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEAC-- 343
Query: 197 VNTNKISIPAVSKEFMIDEAFRLLC-------NLVEDGHKLFPSLGQFDDAFCFFSEMQI 249
++ +DE + C ++ G+ + G+ D A F EM +
Sbjct: 344 -------------KYFLDEMVKAGCRPDVVCYTVMITGYVV---SGELDKAKEMFREMTV 387
Query: 250 KTHPPNRPVY 259
K PN Y
Sbjct: 388 KGQLPNVFTY 397
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--- 111
M D S T ++++ GK A+ N VL Y +L R
Sbjct: 280 MARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGN 339
Query: 112 ----------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
M++ G PD +T+++ + SG++ +A+E +E++ K
Sbjct: 340 LEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVK----------- 388
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGEL 191
G +P++ T+NS+I +C +GE
Sbjct: 389 --------GQLPNVFTYNSMIRGLCMAGEF 410
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KG +P+ T+ ++ C +G+ REA L+E+ +G NP +V+ + K
Sbjct: 382 FREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRK 441
Query: 169 QGSVPDLETFNSLIETICKSG 189
G + + +I + K G
Sbjct: 442 AGKLSEAR---KVIREMVKKG 459
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 60/232 (25%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIR 114
S++I+ K G D+A+ +FN+ + V+ Y+SL +C MI
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174
+ +PD T + L++ + GK+ E AK++ N+MI +G PD
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLE-------------------AKELYNEMITRGIAPD 349
Query: 175 LETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
T+NSLI+ CK L G D+ T I I + K +D+ RL
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409
Query: 222 NLVEDGHKLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ G L P+ G+ + A F EM + PP+ Y
Sbjct: 410 EISSKG--LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--------- 109
+ P T++ +I+ F K + A ++F+ + C+ ++ Y+ L +
Sbjct: 345 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 404
Query: 110 VRMIR----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165
+R+ R KG +P+ T+ LV +C SGK+ A+E QE+ +G P V + +++
Sbjct: 405 MRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 464
Query: 166 MIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225
+ G + N +E K + + + I I + +D+A+ L C+L +
Sbjct: 465 LCDNGEL------NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 226 DGHK 229
G K
Sbjct: 519 KGVK 522
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 35/170 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN------ 164
R + G+ PD T + LVN +C G++ EA + + + P + + ++N
Sbjct: 130 RAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKG 189
Query: 165 ----------KMIKQGSVPDLETFNSLIETICKSGELGLCADV----NTNKISIPAVSKE 210
+M++ G PD T+ ++ +CKSG L D+ I V
Sbjct: 190 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYS 249
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID +L +D G FDDA F+EM++K + Y+
Sbjct: 250 IVID-------SLCKD--------GSFDDALSLFNEMEMKGIKADVVTYS 284
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 38/142 (26%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T S +I+ F K G + A E++N+ MI +G PD T+
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNE----------------------MITRGIAPDTITYN 354
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK----------------Q 169
L++ +C + EA + + KG P + + ++N K +
Sbjct: 355 SLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414
Query: 170 GSVPDLETFNSLIETICKSGEL 191
G +P+ T+N+L+ C+SG+L
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKL 436
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ GF PD+ T+ ++N C SG A + +++ ++ V +++ + K G
Sbjct: 200 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 259
Query: 171 SVPD-LETFNSLIETICKSGEL-GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
S D L FN + E+ G+ ADV T I + + D+ ++L ++ G
Sbjct: 260 SFDDALSLFNEM--------EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI--GR 309
Query: 229 KLFPSL-------------GQFDDAFCFFSEMQIKTHPPNRPVY 259
+ P + G+ +A ++EM + P+ Y
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 78/229 (34%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S++I + K +D+ + +F + ++ + YN+L + F + M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE-------------------------- 146
+ +G P T+ IL++ C +G++ +A E ++
Sbjct: 447 VSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506
Query: 147 ---------LSDKGFNPPVRSAKQMVNKMIKQGSV----------------PDLETFNSL 181
LSDKG P V + M+ + K+GS+ PD T+N L
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNIL 566
Query: 182 IET------ICKSGEL-------GLCADVNTNKISIPAVSKEFMIDEAF 217
I + S EL G AD +T K+ I +S +D++F
Sbjct: 567 IRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDR-RLDKSF 614
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 33/190 (17%)
Query: 33 RTLNRLNLTLISELS-MWKTIELMKPDSL-SVFPQTLS--LIIEEFGKHGLIDNAVEVFN 88
+ LNR+ L+S + K EL K L V P T S L+++ F + + A ++F
Sbjct: 155 KHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFG 214
Query: 89 KCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSG 135
K + V Y L F R M+ KGFVPD+ ++T L+N+ C
Sbjct: 215 KMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKT 274
Query: 136 KMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFN 179
++REA + L + KG NP + A+++++ M+ G P+ ++
Sbjct: 275 QLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYR 334
Query: 180 SLIETICKSG 189
+LI +C G
Sbjct: 335 TLIGGLCDQG 344
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 32/125 (25%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175
G +P+ R++ +L+ A+C N + A Q+ KM+++ VPD+
Sbjct: 185 GVMPNTRSYNLLMQAFC-------------------LNDDLSIAYQLFGKMLERDVVPDV 225
Query: 176 ETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
+++ LI+ C+ G++ G D + + ++ ++ + EA++LLC
Sbjct: 226 DSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCR 285
Query: 223 LVEDG 227
+ G
Sbjct: 286 MKLKG 290
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 94 NCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREA 140
C ++ YN++ + F R M+ G P+ ++ L+ C G E
Sbjct: 290 GCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEG 349
Query: 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200
+++L+E+ KGF+P + +V G V E ++E + K+GE +T
Sbjct: 350 KKYLEEMISKGFSPHFSVSNCLVKGFCSFGKV---EEACDVVEVVMKNGE---TLHSDTW 403
Query: 201 KISIPAVSKE 210
++ IP + E
Sbjct: 404 EMVIPLICNE 413
>sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405
OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1
Length = 458
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 23/142 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFVRMIRKG------- 116
+++ +++ G+ G + A+ F + ++C+ V YN++ +C V +K
Sbjct: 167 SITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQM 226
Query: 117 ------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
+ PD T+TIL++++C G +Q K + A +M +M+ +G
Sbjct: 227 QLPGFRYPPDTYTYTILISSYCRYG--------MQTGCRKAIRRRMWEANRMFREMLFRG 278
Query: 171 SVPDLETFNSLIETICKSGELG 192
VPD+ T+N LI+ CK+ +G
Sbjct: 279 FVPDVVTYNCLIDGCCKTNRIG 300
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
F M+ +GFVPD T+ L++ C + ++ A E +++ KG P
Sbjct: 271 FREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSV 330
Query: 155 --PVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEF 211
+ A +M+ M K G VP T+ LI + ++ D+ + V +E+
Sbjct: 331 TNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVETRRAAEARDLVVEMVEAGLVPREY 390
Query: 212 MIDEAFRLLCN 222
++L+C+
Sbjct: 391 ----TYKLVCD 397
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 50/233 (21%)
Query: 63 FPQTL--SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR--------- 111
FP + S ++ K D + K + YN L CF R
Sbjct: 75 FPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALA 134
Query: 112 ----MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP------------- 154
M++ G+ PD T L+N +C ++ +A + ++ + G+ P
Sbjct: 135 LLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLF 194
Query: 155 ---PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNKISIPAV 207
A ++++M+++G PDL T+ +++ +CK G+ L L + KI V
Sbjct: 195 LHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVV 254
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ID LC + DDA F+EM+ K PN Y+
Sbjct: 255 IYSTVIDS----LCKYRHE-----------DDALNLFTEMENKGVRPNVITYS 292
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T S +I+ F K G + A +++ + + + Y+SL F M
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELM 384
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG---------------FNPPVR 157
IRK +P+ T+ L+N +C + ++ + E +E+S +G F
Sbjct: 385 IRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDC 444
Query: 158 SAKQMVNK-MIKQGSVPDLETFNSLIETICKSGELG 192
QMV K M+ G P++ T+N L++ +CK+G+L
Sbjct: 445 DNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLA 480
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++ K G D A+ + NK A + V++Y+++ +C F M
Sbjct: 220 TYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 279
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG P+ T++ L++ C+ G+ +A L ++ ++ NP + + +++ +K+G +
Sbjct: 280 ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL 339
Query: 173 ----------------PDLETFNSLIETICKSGELG 192
P++ T++SLI C LG
Sbjct: 340 VKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 30/125 (24%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILV 128
+ E + GL+ N V F + C ++ + F +M+ G P+ T+ IL+
Sbjct: 415 LFREMSQRGLVGNTVTYTTLIHGFFQARDC----DNAQMVFKQMVSVGVHPNILTYNILL 470
Query: 129 NAWCSSGKMREAQ---EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185
+ C +GK+ +A E+LQ RS + PD+ T+N +IE +
Sbjct: 471 DGLCKNGKLAKAMVVFEYLQ-----------RSTME-----------PDIYTYNIMIEGM 508
Query: 186 CKSGE 190
CK+G+
Sbjct: 509 CKAGK 513
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 57/271 (21%)
Query: 25 VRHDIYAERTLNRLN-LTLISELSMWKTIELMKPDSLSVFPQTL--SLIIEEFGKHGLID 81
VR+D Y + ++NRLN L L ++++ + +P FP + S ++ K D
Sbjct: 45 VRYD-YRKISINRLNDLKLDDAVNLFGDMVKSRP-----FPSIVEFSKLLSAIAKMNKFD 98
Query: 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILV 128
+ + + + Y+ L CF R M++ G+ PD T L+
Sbjct: 99 LVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLL 158
Query: 129 NAWCSSGKMREAQEFLQELSDKGFNPP----------------VRSAKQMVNKMIKQGSV 172
N +C ++ +A + ++ + G+ P A +V++M+ +G
Sbjct: 159 NGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 173 PDLETFNSLIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
PDL T+ ++ +CK G+ L L + KI V +ID LCN
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA----LCN------ 268
Query: 229 KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+DA F+EM K PN Y
Sbjct: 269 -----YKNVNDALNLFTEMDNKGIRPNVVTY 294
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T +++ K G ID A+ + K + V++YN++ +C F M
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG P+ T+ L+ C+ G+ +A L ++ ++ NP V +
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETIC 186
A+++ ++MIK+ PD+ T++SLI C
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 55/248 (22%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------------HVCFVR 111
T S +I+ F K G + A +++++ + + Y+SL H+ F
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM-FEL 386
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF----------------NPP 155
MI K P+ T+ L+ +C + ++ E E +E+S +G
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKI 202
+A+ + +M+ G +PD+ T++ L++ +C +G++ + D+ T I
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506
Query: 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQIKT 251
I + K +++ + L C+L G K F G ++A F EM+ +
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566
Query: 252 HPPNRPVY 259
P+ Y
Sbjct: 567 PLPDSGTY 574
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 20/138 (14%)
Query: 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------- 156
V F + R PD T+ I++ C +GK+ + + LS KG P V
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Query: 157 ------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE 210
A + +M ++G +PD T+N+LI + G+ A++ S V
Sbjct: 547 CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 606
Query: 211 FMIDEAFRLLCNLVEDGH 228
I L+ N++ DG
Sbjct: 607 STIG----LVTNMLHDGR 620
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 40/250 (16%)
Query: 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKH-GLIDNAVEVFNKCTAFN 94
N+LNL +K + M+ L +L+++I+ ++ G +D +++F +
Sbjct: 135 NQLNLA-------FKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRG 187
Query: 95 CQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141
C Y +L +C F M+ K P T+T L+N C S + EA
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAM 247
Query: 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTN 200
+L+E+ KG P V + +++ + K G S+ +E F ++ C+ ++ T
Sbjct: 248 RYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR-------PNMVTY 300
Query: 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHK-----------LFPSLGQFDDAFCFFSEMQI 249
I + KE I EA LL + G K F ++ +F +A F EM +
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL 360
Query: 250 KTHPPNRPVY 259
PNR +
Sbjct: 361 GGITPNRLTW 370
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 35/176 (19%)
Query: 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HV 107
+ +E MK + T S +++ K G A+E+F A C+ ++ Y +L +
Sbjct: 248 RYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Query: 108 C-----------FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP- 155
C RM +G PD + +++ +C+ K REA FL E+ G P
Sbjct: 308 CKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNR 367
Query: 156 ------VRSAKQMVN---------------KMIKQGSVPDLETFNSLIETICKSGE 190
V+++ ++V M +G ++ET SL++ +CK GE
Sbjct: 368 LTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGE 423
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 51/188 (27%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
+T +++I+ GLID A +F++ MI +G P+ T+
Sbjct: 302 RTYTVLIKALCDRGLIDKAFNLFDE----------------------MIPRGCKPNVHTY 339
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV------------ 172
T+L++ C GK+ EA +++ P V + ++N K G V
Sbjct: 340 TVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEK 399
Query: 173 ----PDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPAVSKEFMIDE 215
P++ TFN L+E +C+ G + GL D+ + + I + +E ++
Sbjct: 400 RACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNT 459
Query: 216 AFRLLCNL 223
A++LL ++
Sbjct: 460 AYKLLSSM 467
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------ 158
+M KG P RT+T+L+ A C G + +A E+ +G P V +
Sbjct: 291 QMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDG 350
Query: 159 ----AKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
A + KM+K P + T+N+LI CK G +
Sbjct: 351 KIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRV 387
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 21/109 (19%)
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQM 162
P+ +++IL++ C G++ EA ++ +KG P R+ A +
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGEL----GLCADVNTNKISIPAV 207
++MI +G P++ T+ LI+ +C+ G++ G+C + ++I P+V
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRI-FPSV 371
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 32/191 (16%)
Query: 33 RTLNRLNLTLISELSMWKTIELMK---PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK 89
RT N L L +K + L+K + LS + +++I+ + G ++ A ++ +
Sbjct: 407 RTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSS 466
Query: 90 CTAFNCQQCVLLYNSLHVCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGK 136
F+ + L + ++ F + M+RKG D+ T T L++ C GK
Sbjct: 467 MNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGK 526
Query: 137 MREAQEFLQELSD-KGFNPP---------------VRSAKQMVNKMIKQGSVPDLETFNS 180
R+A L+ L + P V+ M+ K+ K G VP + T+ +
Sbjct: 527 TRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTT 586
Query: 181 LIETICKSGEL 191
L++ + +SG++
Sbjct: 587 LVDGLIRSGDI 597
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR------------ 111
P +L++I++ K + + + K V+ Y +L +R
Sbjct: 546 PHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILE 605
Query: 112 -MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
M G +P+ +TI++N C G++ EA++ L + D G +P + MV + G
Sbjct: 606 LMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNG 665
Query: 171 SVPD-LETFNSLIE 183
+ LET +++E
Sbjct: 666 KLDRALETVRAMVE 679
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 31/160 (19%)
Query: 62 VFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV------- 110
+FP T + +I + K G + A E+ C+ V +N L +C V
Sbjct: 367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV 426
Query: 111 ----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
RM+ G PD ++ +L++ C G M A + L ++ P + ++N
Sbjct: 427 HLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAF 486
Query: 167 IKQGSVP----------------DLETFNSLIETICKSGE 190
KQG D T +LI+ +CK G+
Sbjct: 487 CKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGK 526
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 30/154 (19%)
Query: 106 HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF------------- 152
+V + RM GFV + +VNA C +G A+ F+ ++ GF
Sbjct: 180 YVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLG 239
Query: 153 ---NPPVRSAKQMVNKMIKQGS-VPDLETFNSLIETICKSGEL-------------GLCA 195
+R A ++ + M K+ + P+ +++ LI +C+ G L G
Sbjct: 240 FCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQP 299
Query: 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229
T + I A+ +ID+AF L ++ G K
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCK 333
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI---- 167
M G P+ T+T++V + ++GK+ A E ++ + ++G+ R ++ +
Sbjct: 642 MQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQK 701
Query: 168 -----KQGSVPDL-------ETFNSLIETICKSGEL--GLCADVNTNKISIPAVSKEFMI 213
++ +V D+ E N LI + + G GLC + T + KE
Sbjct: 702 GIDNSEESTVSDIALRETDPECINELISVVEQLGGCISGLCIFLVTR------LCKEGRT 755
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFC 242
DE+ L+ N++E G L ++ +++C
Sbjct: 756 DESNDLVQNVLERGVFLEKAMDIIMESYC 784
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-- 105
MW I M+ + + +T +++ ++ + +D A+ FN ++ ++ +N L
Sbjct: 153 MWDLINAMRKKKM-LNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLS 211
Query: 106 HVCFVRMIRKG----------FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155
+C + +RK F PD +T++IL+ W + +A+E +E+ D G +P
Sbjct: 212 ALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPD 271
Query: 156 VRSAKQMVNKMIKQGSVPD-LETFNSLIETICK 187
+ + MV+ + K G V + L S+ +ICK
Sbjct: 272 IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 304
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 41/203 (20%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-HV------------CFVRM 112
T S++++ K G +D A+ + C+ +Y+ L H F+ M
Sbjct: 274 TYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEM 333
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
R G D L+ A+C + +M+ L+E+ KG P +S ++ +I++G
Sbjct: 334 ERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEK 393
Query: 173 ---------------PDLETFNSLIETICKSGEL-------------GLCADVNTNKISI 204
PD +T+ +I+ C+ E+ G+ ++T + I
Sbjct: 394 DEAFDVFRKMIKVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLI 453
Query: 205 PAVSKEFMIDEAFRLLCNLVEDG 227
+ +E +A LL ++E G
Sbjct: 454 NGLCEERTTQKACVLLEEMIEMG 476
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106
++++ ++ MK ++ ++ ++I+ + G D A +VF K C+ Y +
Sbjct: 360 NVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVI 418
Query: 107 VCFVR-------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
F M +KG P T ++L+N C ++A L+E+ + G
Sbjct: 419 KMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIR 478
Query: 154 PPVRSAKQMVNKMIKQ 169
P + ++ +IK+
Sbjct: 479 PSGVTFGRLRQLLIKE 494
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 29/150 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T S II+ + G ID A+ +F + + V+ YNSL + M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
+ + VP+ T +L++ + GK++EA E +E+ +G +P +
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
A M++ M++ PD+ TF SLI+ C
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F + ++G V + T++ILV +C SGK++ A+E QE+ G P V + +++ +
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450
Query: 169 QGSV-------PDLE---------TFNSLIETICKSGEL-------------GLCADVNT 199
G + DL+ + ++IE +CK G++ G+ +V T
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510
Query: 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228
+ I + K+ + EA LL + EDG+
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGN 539
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 40/180 (22%)
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G + T I++N +C K A L ++ G+ P V A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC-------------ADVNTNKISIPA 206
+V++M++ G PD+ T+NS++ IC+SG+ L ADV T I +
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 207 VSKEFMIDEAFRLLCNLVEDGHK----LFPSL-------GQFDDAFCFFSEMQIKTHPPN 255
+ ++ ID A L + G K + SL G+++D +M + PN
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 35/169 (20%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170
RM+ G PD T+ +VN C SG A + L+++ ++ V + +++ + + G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242
Query: 171 SV----------------PDLETFNSLIETICKSGELG----LCADVNTNKISIPAVSKE 210
+ + T+NSL+ +CK+G+ L D+ + +I ++
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302
Query: 211 FMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++D +F G+ +A + EM + PN Y
Sbjct: 303 VLLD---------------VFVKEGKLQEANELYKEMITRGISPNIITY 336
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 45/206 (21%)
Query: 23 NIVRHDIYAERTLN-------RLNLTLISELSMWKTIEL-MKPDSLSVFPQTLSLIIEEF 74
N + H+IY TLN R T + + K ++L +PD+ T + +I+
Sbjct: 117 NGIAHNIY---TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT-----TTFNTLIKGL 168
Query: 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDK 121
G + AV + ++ CQ V+ YNS+ +C +M + D
Sbjct: 169 FLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV 228
Query: 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS---------- 171
T++ ++++ C G + A +E+ KG V + +V + K G
Sbjct: 229 FTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 172 ------VPDLETFNSLIETICKSGEL 191
VP++ TFN L++ K G+L
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKL 314
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 37/184 (20%)
Query: 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI 80
+AN V + I + + L EL + PD + T ++++ +G +
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM-----TYGILLDGLCDNGKL 454
Query: 81 DNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRMIRKGFVPDKRTHTIL 127
+ A+E+F +++Y ++ +C F + KG P+ T+T++
Sbjct: 455 EKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVM 514
Query: 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++ C G + EA L+ KM + G+ P+ T+N+LI +
Sbjct: 515 ISGLCKKGSLSEANILLR-------------------KMEEDGNAPNDCTYNTLIRAHLR 555
Query: 188 SGEL 191
G+L
Sbjct: 556 DGDL 559
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 42/219 (19%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112
ELMK + +T++ +++ G+ L A +F+K
Sbjct: 253 ELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDK----------------------- 289
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+++ F P+ T+T+L+N WC + EA ++ D+G P + + M+ +++
Sbjct: 290 LKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKK 349
Query: 173 PD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-- 229
D ++ F+ + KS G C +V + I I K+ ++ A ++V+ G +
Sbjct: 350 SDAIKLFH-----VMKSK--GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402
Query: 230 ---------LFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F + + D + EMQ K HPP+ Y
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTY 441
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 51/194 (26%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124
++ +++I +F K ++ A+E F+ M+ G PD +
Sbjct: 369 RSYTIMIRDFCKQSSMETAIEYFDD----------------------MVDSGLQPDAAVY 406
Query: 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS----------------AKQMVNKMIK 168
T L+ + + K+ E L+E+ +KG P ++ A ++ NKMI+
Sbjct: 407 TCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQ 466
Query: 169 QGSVPDLETFNSLIET--ICKSGEL-----------GLCADVNTNKISIPAVSKEFMIDE 215
P + TFN ++++ + ++ E+ G+C D N+ + I + E E
Sbjct: 467 NEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSRE 526
Query: 216 AFRLLCNLVEDGHK 229
A R L +++ G K
Sbjct: 527 ACRYLEEMLDKGMK 540
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVR 111
+T + +I+ + ++A ++NK + + +N + +
Sbjct: 439 KTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEE 498
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156
MI+KG PD ++T+L+ GK REA +L+E+ DKG P+
Sbjct: 499 MIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPL 543
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 27/168 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+M++ G+ PD T + L+N +C S ++ +A + ++ + G+ P
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A +V++M+++G PDL T+ +++ +CK G++ L +S+ ++
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA-------LSLLKKMEKGK 253
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
I EA ++ N + DG DDA F+EM K P+ Y+
Sbjct: 254 I-EADVVIYNTIIDG---LCKYKHMDDALNLFTEMDNKGIRPDVFTYS 297
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 45/209 (21%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVC-----------FVRM 112
T ++ K G ID A+ + K + V++YN++ +C F M
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------------- 158
KG PD T++ L++ C+ G+ +A L ++ ++ NP V +
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344
Query: 159 --AKQMVNKMIKQGSVPDLETFNSLIETICKSG---------ELGLCADVNTNKISIPAV 207
A+++ ++MIK+ PD+ T++SLI C EL + D N ++ +
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Query: 208 SKEFMIDEAFRLLCNLVEDGHKLFPSLGQ 236
K F +A R VE+G +LF + Q
Sbjct: 405 IKGFC--KAKR-----VEEGMELFREMSQ 426
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 29/154 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-------------HVCFVRM 112
T + +I F + DNA VF + + +L YN L V F +
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------- 156
R PD T+ I++ C +GK+ + E LS KG +P V
Sbjct: 495 QRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSK 554
Query: 157 RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A ++ KM + G +P+ T+N+LI + G+
Sbjct: 555 EEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGD 588
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 16/94 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
MI++GF+PD T T+++ A C +G + A + +++ D GF P
Sbjct: 243 MIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGS 302
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
++ A +M+ +M++ G P++ T +LI+ +CK G
Sbjct: 303 IKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRG 336
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 103 NSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
N + F RM +G P+ T+T L+N C +G A E + + D+GF P + +
Sbjct: 375 NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAA 434
Query: 163 VNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222
++ + K+ P+ E + K+ GL AD T I I K+ I++A C
Sbjct: 435 IDSLCKKSRAPE------AYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCR 488
Query: 223 LVEDG 227
+ + G
Sbjct: 489 MNKTG 493
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 32/132 (24%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F RM + GF D R + IL+ A+C KM+E++ Q ++
Sbjct: 486 FCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQ-------------------LVVS 526
Query: 169 QGSVPDLETFNSLIETICKSGEL-------------GLCADVNTNKISIPAVSKEFMIDE 215
G +P ET+ S+I CK G++ G D T I + K+ M+DE
Sbjct: 527 LGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDE 586
Query: 216 AFRLLCNLVEDG 227
A +L +++ G
Sbjct: 587 ACKLYEAMIDRG 598
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 32/135 (23%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T +++I+E K I+ A+ F + + + L N L F R +
Sbjct: 465 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 524
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
+ G +P K T+T +++ +C G + A ++ M + G V
Sbjct: 525 VSLGLIPTKETYTSMISCYCKEGDIDLALKYFH-------------------NMKRHGCV 565
Query: 173 PDLETFNSLIETICK 187
PD T+ SLI +CK
Sbjct: 566 PDSFTYGSLISGLCK 580
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 37/152 (24%)
Query: 59 SLSVFP--QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116
SL + P +T + +I + K G ID A++ F+ M R G
Sbjct: 526 SLGLIPTKETYTSMISCYCKEGDIDLALKYFHN----------------------MKRHG 563
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-- 174
VPD T+ L++ C + EA + + + D+G +PP + + + K+ +
Sbjct: 564 CVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAM 623
Query: 175 -----------LETFNSLIETICKSGELGLCA 195
+ T +L+ +C ++G+ A
Sbjct: 624 ILLEPLDKKLWIRTVRTLVRKLCSEKKVGVAA 655
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 41/219 (18%)
Query: 61 SVFPQTLSL--IIEEFGKHGLIDNAVEVF----NK----------CTAFNCQQCVLLYNS 104
FP +L+ +I F + G +DNA+EV NK C+A C +
Sbjct: 129 GAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPE 188
Query: 105 LHVCFVR-MIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQM 162
L + F + G VP+ T+T LV+A C GK+ E ++ ++ L D+GF
Sbjct: 189 LALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNW 248
Query: 163 VNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
++ K G++ D L ++E G+ DV + I I +SKE ++EA LL
Sbjct: 249 IHGYFKGGALVDALMQDREMVEK-------GMNRDVVSYSILIDGLSKEGNVEEALGLLG 301
Query: 222 NLVEDGHKLFPSL-------------GQFDDAFCFFSEM 247
++++G + P+L G+ ++AF F+ +
Sbjct: 302 KMIKEGVE--PNLITYTAIIRGLCKMGKLEEAFVLFNRI 338
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 29/153 (18%)
Query: 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------HVCFVRMIRK------ 115
++II K G + A+ + + + + YNSL C V +R
Sbjct: 659 TIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLEN 718
Query: 116 -GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS--- 171
G VP + T+ IL++ C G +A++ L + KG P + +V+ K G
Sbjct: 719 IGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTED 778
Query: 172 -------------VPDLETFNSLIETICKSGEL 191
PD T +S+I+ CK G++
Sbjct: 779 AMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDM 811
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
Y + M PD T+ ++ +C +G++ EA E EL + V +
Sbjct: 463 YGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAV-CYNR 521
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAV 207
+++ + K+G ++ E + + E GL D++T++ + ++
Sbjct: 522 IIDALCKKG------MLDTATEVLIELWEKGLYLDIHTSRTLLHSI 561
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 35/133 (26%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114
+ PD+ T + +I+ + K G I+ A+E+FN+ +R
Sbjct: 478 LTPDT-----ATYATMIKGYCKTGQIEEALEMFNE-----------------------LR 509
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS--- 171
K V + +++A C G + A E L EL +KG + +++ +++ + G
Sbjct: 510 KSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKG 569
Query: 172 ----VPDLETFNS 180
V LE NS
Sbjct: 570 ILGLVYGLEQLNS 582
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 124 HTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS-VPDLETFNSLI 182
+TI++N C G + +A +G + ++N + +QG V L F+SL
Sbjct: 658 YTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSL- 716
Query: 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFD---D 239
E I GL T I I + KE + +A +LL ++V G L P++ ++ D
Sbjct: 717 ENI------GLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKG--LVPNIIIYNSIVD 768
Query: 240 AFCFFSEMQ 248
+C + +
Sbjct: 769 GYCKLGQTE 777
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 42 LISELSMWKTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV 99
L+ L ++ ++E ++ + P T ++I+ K GL +A ++ + + +
Sbjct: 706 LVEALRLFDSLE-----NIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNI 760
Query: 100 LLYNSLHVCF---------VRMIRKGFV----PDKRTHTILVNAWCSSGKMREAQEFLQE 146
++YNS+ + +R++ + + PD T + ++ +C G M EA E
Sbjct: 761 IIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTE 820
Query: 147 LSDK 150
DK
Sbjct: 821 FKDK 824
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 42/224 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I F K+ ++ A+++F +YN L + + M
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV---------------R 157
R+G VPD T+ L+ C +G + A++ +L+ KG V R
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESR 487
Query: 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217
A ++ +M K G P T+N +++ CK G L ++ T +++
Sbjct: 488 KAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ------------MEKER 535
Query: 218 RLLCNLVEDGHKL--FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
RL N+ L + G+ +DA +EM K PNR Y
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 84/226 (37%), Gaps = 43/226 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------- 111
T +++I K G ++ A +V + C V+ YN+L + +
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVL 284
Query: 112 --MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN----- 164
M+ P+ T IL++ + + + + +E+ D+ P V S ++N
Sbjct: 285 KEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNG 344
Query: 165 -----------KMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMI 213
KM+ G P+L T+N+LI CK+ L D+ + AV M
Sbjct: 345 GKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMY 404
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
+ C LG+ DD F EM+ + P+ Y
Sbjct: 405 NMLIDAYC-----------KLGKIDDGFALKEEMEREGIVPDVGTY 439
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV-----------RM 112
T +++I+ F K + +++VF + + + V+ YNSL +C +M
Sbjct: 298 TFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM 357
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN-------- 164
+ G P+ T+ L+N +C + ++EA + + +G P R +++
Sbjct: 358 VSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKI 417
Query: 165 --------KMIKQGSVPDLETFNSLIETICKSGEL 191
+M ++G VPD+ T+N LI +C++G +
Sbjct: 418 DDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
+ MIR+ P+ T +++NA C +GKM +A++ ++++ G +P V S +++
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCK 270
Query: 165 -----KMIKQGSV----------PDLETFNSLIETICKSGEL 191
KM K +V P+L TFN LI+ K L
Sbjct: 271 LGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNL 312
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
++ +L+ + GK+ +A L E+ +KG P + + + +M+ QG VPD+E
Sbjct: 543 SYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIE 596
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQE--------------------FLQELSDKG 151
M + G P T+ I++ +C G ++ A LQ S KG
Sbjct: 496 MSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555
Query: 152 FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189
+ A ++N+M+++G VP+ T+ + E + G
Sbjct: 556 ---KLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 26/152 (17%)
Query: 59 SLSVFPQTLSLIIEEFGKHGLIDNAV--EVFNK-CTAFNCQQCVLLYNSLHVCFVRMIRK 115
S + + S+I E G+ + D + +V N C A + LL F M R
Sbjct: 460 SAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL-------FEEMKRG 512
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSA 159
G V D T+TI+V+++C +G + +A+++ E+ + G P V A
Sbjct: 513 GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYA 572
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
++ M+ +G +P++ T+++LI+ CK+G++
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQV 604
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 94/216 (43%), Gaps = 49/216 (22%)
Query: 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR- 111
E MK L T +++++ F K GLI+ A + FN+ C V+ Y +L +++
Sbjct: 507 EEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566
Query: 112 ------------MIRKGFVPDKRTHTILVNAWCSSGKMREAQE----------------F 143
M+ +G +P+ T++ L++ C +G++ +A + +
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626
Query: 144 LQELSDKGFNP----------------PVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187
++ D P V A+++++ M +G P+ +++LI+ +CK
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686
Query: 188 SGELGLCADVNT--NKISIPAVSKEF--MIDEAFRL 219
G+L +V T ++ PA + +ID F++
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKV 722
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS------------- 158
M +G P++ + L++ C GK+ EAQE E+S+ GF + +
Sbjct: 665 MSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKR 724
Query: 159 ---AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
A ++++KM++ P++ + +I+ +CK G+
Sbjct: 725 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 759
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS---------------- 158
+ FVPD +T L++ C + EA +FL + P V +
Sbjct: 296 ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGR 355
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190
K+++N M+ +G P + FNSL+ C SG+
Sbjct: 356 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGD 387
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 49/210 (23%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-CFVR------------MIRKG 116
+I + L + A++ N+ A +C V+ Y++L C + M+ +G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176
P + LV+A+C+SG D + A +++ KM+K G +P
Sbjct: 368 CYPSPKIFNSLVHAYCTSG-------------DHSY------AYKLLKKMVKCGHMPGYV 408
Query: 177 TFNSLIETICKSGE------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230
+N LI +IC + L L + ++ V + + R LC
Sbjct: 409 VYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLC--------- 459
Query: 231 FPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
S G+++ AF EM + P+ Y+
Sbjct: 460 --SAGKYEKAFSVIREMIGQGFIPDTSTYS 487
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN---- 164
+ M+ G V +K + CS+GK +A ++E+ +GF P + +++N
Sbjct: 436 YSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCN 495
Query: 165 ------------KMIKQGSVPDLETFNSLIETICKSG 189
+M + G V D+ T+ ++++ CK+G
Sbjct: 496 ASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 63 FPQTL---SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--HVCFV------- 110
FP TL S +I+ + K D A +V +K +C V++Y + +C V
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 764
Query: 111 ----RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166
M KG P+ T+T +++ + GK+ E L+ + KG P + + +++
Sbjct: 765 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHC 824
Query: 167 IKQGSVPDLETFNSLIETI 185
K G+ L+ ++L+E +
Sbjct: 825 CKNGA---LDVAHNLLEEM 840
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 40/219 (18%)
Query: 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------MIRKG 116
II+ F K G +D+AV + + V+ Y SL + M KG
Sbjct: 590 IIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKG 649
Query: 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--PV--------RSAKQMV--- 163
D + L++ +C M A EL ++G NP P+ R+ MV
Sbjct: 650 VKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAAL 709
Query: 164 ---NKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220
KM+K G DL T+ +LI+ + K G L L +++ T ++ V E ++
Sbjct: 710 DLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDE--------II 761
Query: 221 CNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
++ +G GQF F EM+ PN +Y
Sbjct: 762 YTVIVNG---LSKKGQFVKVVKMFEEMKKNNVTPNVLIY 797
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 112/276 (40%), Gaps = 60/276 (21%)
Query: 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98
N L+S L ++ +E P SV T S++IE F K+G ++ A+E + K
Sbjct: 352 NNDLVSALVLFDKMEKEGPSPNSV---TFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPS 408
Query: 99 VLLYNSLHVCFVRMIR-----KGFVPDKRTHTILVN--------AW-CSSGKMREAQEFL 144
V +++ +++ + K F D+ T L N +W C GK EA E L
Sbjct: 409 VFHVHTIIQGWLKGQKHEEALKLF--DESFETGLANVFVCNTILSWLCKQGKTDEATELL 466
Query: 145 QELSDKGFNPPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKS 188
++ +G P V S A+ + + ++++G P+ T++ LI+ ++
Sbjct: 467 SKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRN 526
Query: 189 GE----LGLCADVNTNKISIPAVSKEFMID---------EAFRLLCNLVEDGH------- 228
+ L + + ++ I + V + +I+ +A LL N++E+
Sbjct: 527 HDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMS 586
Query: 229 -----KLFPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
F G+ D A + EM PN Y
Sbjct: 587 YNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITY 622
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMV-------------- 163
VP + T+T ++ A G M +A E+ G + V +A ++
Sbjct: 301 VPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALV 360
Query: 164 --NKMIKQGSVPDLETFNSLIETICKSGEL 191
+KM K+G P+ TF+ LIE K+GE+
Sbjct: 361 LFDKMEKEGPSPNSVTFSVLIEWFRKNGEM 390
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV------------ 156
+ M G VPD+ +T++VN G+ + + +E+ P V
Sbjct: 747 YTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYR 806
Query: 157 ----RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192
A ++ ++M+ +G +PD TF+ L+ SG++G
Sbjct: 807 EGNLDEAFRLHDEMLDKGILPDGATFDILV-----SGQVG 841
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF-NPPVRSAKQMVNKMIKQ 169
R I +G PD +++ V A C + + A L+E+ +K P + ++ +KQ
Sbjct: 258 RAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQ 317
Query: 170 GSVPD 174
G++ D
Sbjct: 318 GNMDD 322
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 46/222 (20%)
Query: 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92
R ++ N T ++ + + K ++ K V + + ++ + K D+AV++ N+
Sbjct: 132 RYVSTSNPTPMASVLVSKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLE 191
Query: 93 FNC----------QQCVLLYNSLHVC---FVRMIRKGFVPDKRTHTILVNAWCSSGKMRE 139
+ ++ NSL + RM+ G D T +L+ A K E
Sbjct: 192 LDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAE 251
Query: 140 AQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG----LCA 195
A E L ++ I++G+ PD ++ ++ CK+ +L L
Sbjct: 252 ALEVL-------------------SRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLR 292
Query: 196 DVNTNKISIP----------AVSKEFMIDEAFRLLCNLVEDG 227
++ K+ +P A K+ +D+A RL ++ DG
Sbjct: 293 EMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDG 334
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Query: 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR---------- 114
+T + +++ + + G +D A+ + + F C + N + F + R
Sbjct: 225 KTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284
Query: 115 ----KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP---------------- 154
GF PD+ T LVN C +G ++ A E + + +G++P
Sbjct: 285 MSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLG 344
Query: 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG---ELGLCADVNTNKISIPAV 207
V+ A +++++MI + P+ T+N+LI T+CK E A V T+K +P V
Sbjct: 345 EVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 38/148 (25%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125
T +++I+ G +D A+ + + C + V+ YN+L
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL-------------------- 476
Query: 126 ILVNAWCSSGKMREAQEFLQELSDKGFNP----------------PVRSAKQMVNKMIKQ 169
++ +C + K REA+E E+ G + V A Q++++MI +
Sbjct: 477 --IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534
Query: 170 GSVPDLETFNSLIETICKSGELGLCADV 197
G PD T+NSL+ C+ G++ AD+
Sbjct: 535 GQKPDKYTYNSLLTHFCRGGDIKKAADI 562
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 16/91 (17%)
Query: 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP----------------P 155
M+++G+ PD T+ +++ C G+++EA E L ++ + +P
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 156 VRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186
V A ++ + +G +PD+ TFNSLI+ +C
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLC 411
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN-KCTAFNCQQCVLLYNSL- 105
M K +E MK + T ++IE + + L D + V + F + YN +
Sbjct: 102 MKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRML 161
Query: 106 ------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
+ +M G PD T +L+ A C + ++R A L+++ G
Sbjct: 162 NLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLV 221
Query: 154 PPVRSAKQMVNKMIKQGSV 172
P ++ ++ I++G +
Sbjct: 222 PDEKTFTTVMQGYIEEGDL 240
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 30/154 (19%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR-------------M 112
T + +I+ K +++A ++ ++ + YNSL F R M
Sbjct: 507 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM 566
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPV------RSA 159
G PD T+ L++ C +G++ A + L+ + KG +NP + R
Sbjct: 567 TSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKT 626
Query: 160 KQMVN---KMIKQGSV-PDLETFNSLIETICKSG 189
+ +N +M++Q PD ++ + +C G
Sbjct: 627 TEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 119 PDKRTHTILVNAWCSSGK-MREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167
PD ++ I+ C+ G +REA +FL EL +KGF P S + ++
Sbjct: 644 PDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLL 693
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 53/267 (19%)
Query: 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS-L 105
+M + I+ M D T +L+I G+ GL + VE F K FN + YN+ L
Sbjct: 170 AMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAIL 229
Query: 106 HV------------CFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153
H + +M+ GF PD T+ I++ A GK L E+ GF+
Sbjct: 230 HSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFS 289
Query: 154 PPVRS----------------AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCA-- 195
P + + A ++N M + G P + F +LI+ + ++G+L C
Sbjct: 290 PDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYF 349
Query: 196 -----------DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-----------KLFPS 233
DV + I +++A + + E G + F
Sbjct: 350 MDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCM 409
Query: 234 LGQFDDAFCFFSEMQIKTHPPNRPVYA 260
G+F +A EM+ + PN VY+
Sbjct: 410 AGKFKEACALLKEMESRGCNPNFVVYS 436
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168
F M KG +P+ T+ ++ +C +GK +EA L+E+ +G NP +VN +
Sbjct: 385 FKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKN 444
Query: 169 QGSV 172
G V
Sbjct: 445 AGKV 448
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 33/203 (16%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL--------HV-----CFVRM 112
T ++ K G ID A+ + NK A + V+++N++ HV F M
Sbjct: 225 TYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM 284
Query: 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172
KG P+ T+ L+N C+ G+ +A L + +K NP V + +++ K+G +
Sbjct: 285 ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKL 344
Query: 173 ----------------PDLETFNSLIETICKSGELGLCADV---NTNKISIPAVSKEFMI 213
PD T+N LI C L + +K +P + +
Sbjct: 345 VEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404
Query: 214 DEAFRLLCNLVEDGHKLFPSLGQ 236
F C VEDG +LF + Q
Sbjct: 405 INGF-CKCKRVEDGVELFREMSQ 426
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 33/170 (19%)
Query: 109 FVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP-------------- 154
+M++ G+ PD T + L+N +C S ++ +A + ++ + G+ P
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 155 --PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM 212
A +V++M+++G PDL T+ +++ +CK G++ L ++ NK+
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNL-LNKM---------- 249
Query: 213 IDEAFRLLCNLVEDGHKLFPSLGQF---DDAFCFFSEMQIKTHPPNRPVY 259
EA R+ N+V + + SL ++ + A F+EM+ K PN Y
Sbjct: 250 --EAARIKANVVI-FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTY 296
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 40/149 (26%)
Query: 61 SVFPQTLS--LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118
S+ P T++ L+I F H +D A ++F M+ K +
Sbjct: 358 SIDPDTITYNLLINGFCMHNRLDEAKQMFK----------------------FMVSKDCL 395
Query: 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKG---------------FNPPVRSAKQMV 163
P+ +T+ L+N +C ++ + E +E+S +G F + QMV
Sbjct: 396 PNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMV 455
Query: 164 NKMIKQGSVP-DLETFNSLIETICKSGEL 191
K + VP D+ T++ L+ +C G+L
Sbjct: 456 FKQMVSNRVPTDIMTYSILLHGLCSYGKL 484
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/152 (18%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG--------- 116
T S+++ +G +D A+ +F + + +YN++ + + G
Sbjct: 470 TYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL 529
Query: 117 -FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG-------FNPPVR---------SA 159
PD T+ +++ CS ++EA + +++ + G +N +R ++
Sbjct: 530 SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAAS 589
Query: 160 KQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191
+++ +M G V D T SL+ + G L
Sbjct: 590 AELIKEMRSSGFVGDASTI-SLVTNMLHDGRL 620
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 30/230 (13%)
Query: 55 MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----- 109
M+ +++ + +I+ + + G++D A +++ Q V N++ CF
Sbjct: 390 MQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKR 449
Query: 110 --------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQ 161
RM+ G ++T L++ +C G + EA+ E+S KG P +
Sbjct: 450 YDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNV 509
Query: 162 MVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221
M+ KQG + + + +E G+ D T I +DEA RL
Sbjct: 510 MIYAYCKQGKIKEARKLRANMEAN------GMDPDSYTYTSLIHGECIADNVDEAMRLFS 563
Query: 222 NLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVYA 260
+ G G+ D+AF + EM+ K + + VY
Sbjct: 564 EMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYT 613
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 52 IELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL------ 105
+++MK D + T +L++E K+G + +A ++F++ + V +Y SL
Sbjct: 282 LKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCR 341
Query: 106 -------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158
+ F + KG P T+ L++ C G+M A+ + E+ KG N
Sbjct: 342 KGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV 401
Query: 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218
+++ ++G V + ++E + G ADV T ++ DEA +
Sbjct: 402 FNTLIDGYCRKGMVDEASMIYDVME------QKGFQADVFTCNTIASCFNRLKRYDEAKQ 455
Query: 219 LLCNLVEDGHKL-----------FPSLGQFDDAFCFFSEMQIKTHPPNRPVY 259
L ++E G KL + G ++A F EM K PN Y
Sbjct: 456 WLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITY 507
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 47/224 (20%)
Query: 69 LIIEEFGKHGLIDNAVEVFN----KCTAFNCQQCVLLY------NSLHVC---FVRMIRK 115
L+ + +G+ + + VF+ K + + + C++ + +C F RM+
Sbjct: 159 LVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDS 218
Query: 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ------ 169
G + TI+V C G++ ++++ ++E S KG P + ++N +KQ
Sbjct: 219 GVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGV 278
Query: 170 ----------GSVPDLETFNSLIETICKSG-------------ELGLCADVNTNKISIPA 206
G V + T+ L+E K+G E G+ +DV+ I
Sbjct: 279 EGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISW 338
Query: 207 VSKEFMIDEAFRLLCNLVEDGHKLFPS---LGQFDDAFCFFSEM 247
++ + AF L L E G L PS G D C EM
Sbjct: 339 NCRKGNMKRAFLLFDELTEKG--LSPSSYTYGALIDGVCKVGEM 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,659,972
Number of Sequences: 539616
Number of extensions: 3554799
Number of successful extensions: 11108
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 8333
Number of HSP's gapped (non-prelim): 1315
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)