Query 041786
Match_columns 260
No_of_seqs 202 out of 1839
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 10:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.3E-40 7.1E-45 301.5 27.1 233 28-260 471-758 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.4E-39 3E-44 297.4 26.9 245 16-260 490-793 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-36 4.1E-41 272.4 16.6 230 27-260 156-466 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.6E-35 9.9E-40 263.5 23.9 229 21-260 181-498 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.9E-34 4.1E-39 264.9 23.8 240 20-260 244-629 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 5.6E-34 1.2E-38 261.8 22.6 229 28-260 120-393 (857)
7 PF13041 PPR_2: PPR repeat fam 99.5 1.3E-14 2.8E-19 85.3 5.5 50 119-187 1-50 (50)
8 KOG4422 Uncharacterized conser 99.5 5.1E-12 1.1E-16 102.8 19.2 113 63-190 206-327 (625)
9 PF13041 PPR_2: PPR repeat fam 99.5 1.2E-13 2.6E-18 81.0 6.5 45 62-106 1-45 (50)
10 PRK11788 tetratricopeptide rep 99.4 3.7E-11 8E-16 101.6 21.0 241 14-257 51-354 (389)
11 KOG4318 Bicoid mRNA stability 99.4 3.6E-12 7.7E-17 111.5 13.5 206 50-260 11-275 (1088)
12 KOG4422 Uncharacterized conser 99.3 1.7E-09 3.7E-14 88.4 22.3 118 26-147 204-339 (625)
13 PF12854 PPR_1: PPR repeat 99.2 1.9E-11 4.1E-16 65.0 3.7 34 115-148 1-34 (34)
14 PF12854 PPR_1: PPR repeat 99.2 5.8E-11 1.3E-15 63.1 4.3 34 58-91 1-34 (34)
15 PRK11788 tetratricopeptide rep 99.1 1.7E-08 3.7E-13 85.4 18.7 198 32-234 110-355 (389)
16 TIGR02917 PEP_TPR_lipo putativ 99.0 2.9E-07 6.3E-12 85.5 24.6 204 39-248 645-898 (899)
17 TIGR02917 PEP_TPR_lipo putativ 99.0 4.8E-07 1E-11 84.1 24.5 31 195-225 734-764 (899)
18 TIGR00756 PPR pentatricopeptid 98.7 5.3E-08 1.2E-12 52.0 4.4 34 122-155 1-34 (35)
19 PF13812 PPR_3: Pentatricopept 98.6 5.1E-08 1.1E-12 51.8 4.1 33 122-154 2-34 (34)
20 TIGR00756 PPR pentatricopeptid 98.6 5.6E-08 1.2E-12 51.9 4.0 35 198-232 1-35 (35)
21 PF13812 PPR_3: Pentatricopept 98.6 5.6E-08 1.2E-12 51.7 3.9 34 197-230 1-34 (34)
22 PF01535 PPR: PPR repeat; Int 98.5 1.8E-07 3.9E-12 48.5 3.6 31 122-152 1-31 (31)
23 PRK15174 Vi polysaccharide exp 98.5 0.00021 4.6E-09 64.7 24.4 212 32-250 113-381 (656)
24 PF01535 PPR: PPR repeat; Int 98.4 3.9E-07 8.5E-12 47.2 3.1 31 198-228 1-31 (31)
25 KOG4318 Bicoid mRNA stability 98.3 1.7E-05 3.7E-10 70.8 12.0 79 112-190 194-286 (1088)
26 TIGR02521 type_IV_pilW type IV 98.2 0.00055 1.2E-08 52.9 19.1 170 36-249 38-231 (234)
27 PRK15174 Vi polysaccharide exp 98.2 0.00078 1.7E-08 61.1 21.9 206 37-250 84-347 (656)
28 PF13429 TPR_15: Tetratricopep 98.2 6.1E-06 1.3E-10 66.7 7.0 183 40-248 55-275 (280)
29 TIGR00540 hemY_coli hemY prote 98.0 0.0032 7E-08 53.8 20.1 207 33-248 157-397 (409)
30 PRK10747 putative protoheme IX 97.9 0.0073 1.6E-07 51.5 21.9 198 36-248 160-388 (398)
31 TIGR00990 3a0801s09 mitochondr 97.9 0.0036 7.7E-08 56.6 21.0 198 45-249 310-570 (615)
32 PRK11447 cellulose synthase su 97.9 0.0055 1.2E-07 59.4 23.3 216 36-256 468-747 (1157)
33 PF13429 TPR_15: Tetratricopep 97.9 4.7E-05 1E-09 61.6 7.8 191 39-249 18-242 (280)
34 PF06239 ECSIT: Evolutionarily 97.9 0.00019 4.2E-09 54.4 10.3 89 61-149 44-167 (228)
35 TIGR00990 3a0801s09 mitochondr 97.9 0.0021 4.6E-08 58.0 18.8 211 12-227 308-572 (615)
36 PRK14574 hmsH outer membrane p 97.9 0.024 5.3E-07 52.6 27.2 134 15-150 51-198 (822)
37 KOG1126 DNA-binding cell divis 97.8 0.0013 2.7E-08 57.4 14.7 195 47-249 337-585 (638)
38 PF08579 RPM2: Mitochondrial r 97.8 0.00037 8E-09 47.1 8.9 88 68-188 29-117 (120)
39 PF08579 RPM2: Mitochondrial r 97.7 0.00044 9.5E-09 46.8 8.7 77 43-133 39-116 (120)
40 TIGR02521 type_IV_pilW type IV 97.7 0.0091 2E-07 45.9 17.1 170 14-225 47-231 (234)
41 PRK10747 putative protoheme IX 97.6 0.014 3E-07 49.8 18.6 203 43-257 98-362 (398)
42 KOG1129 TPR repeat-containing 97.6 0.018 3.8E-07 46.7 17.5 186 37-249 231-457 (478)
43 PRK09782 bacteriophage N4 rece 97.6 0.029 6.2E-07 53.2 21.4 72 175-248 643-731 (987)
44 PRK10049 pgaA outer membrane p 97.5 0.023 4.9E-07 52.8 20.0 177 42-249 250-455 (765)
45 TIGR00540 hemY_coli hemY prote 97.5 0.013 2.8E-07 50.2 16.7 208 42-257 97-371 (409)
46 PRK12370 invasion protein regu 97.5 0.069 1.5E-06 47.7 22.1 78 47-149 322-400 (553)
47 PRK09782 bacteriophage N4 rece 97.5 0.054 1.2E-06 51.4 21.4 162 40-249 520-705 (987)
48 COG3071 HemY Uncharacterized e 97.4 0.052 1.1E-06 45.0 18.3 193 29-224 153-388 (400)
49 KOG4626 O-linked N-acetylgluco 97.4 0.006 1.3E-07 53.4 13.2 204 42-255 129-420 (966)
50 KOG1155 Anaphase-promoting com 97.4 0.059 1.3E-06 45.7 18.3 201 47-248 245-493 (559)
51 KOG1126 DNA-binding cell divis 97.4 0.01 2.3E-07 51.9 14.5 96 47-149 409-517 (638)
52 PRK11447 cellulose synthase su 97.4 0.026 5.6E-07 54.9 18.9 175 65-250 462-700 (1157)
53 KOG1155 Anaphase-promoting com 97.4 0.063 1.4E-06 45.5 18.3 217 2-250 266-553 (559)
54 COG2956 Predicted N-acetylgluc 97.3 0.06 1.3E-06 43.6 18.6 33 198-230 250-282 (389)
55 PF10037 MRP-S27: Mitochondria 97.3 0.0026 5.7E-08 53.9 10.2 94 58-151 60-168 (429)
56 PF10037 MRP-S27: Mitochondria 97.3 0.0019 4.2E-08 54.7 9.3 103 115-234 60-175 (429)
57 KOG1070 rRNA processing protei 97.3 0.046 9.9E-07 52.2 18.1 175 38-249 1506-1682(1710)
58 PF06239 ECSIT: Evolutionarily 97.2 0.0026 5.7E-08 48.4 8.0 77 110-189 76-152 (228)
59 KOG4626 O-linked N-acetylgluco 97.2 0.065 1.4E-06 47.2 17.0 216 11-255 231-488 (966)
60 PF12921 ATP13: Mitochondrial 97.1 0.014 3E-07 41.0 10.3 103 63-190 1-103 (126)
61 KOG1128 Uncharacterized conser 97.1 0.061 1.3E-06 48.0 15.9 159 66-249 426-615 (777)
62 PF12569 NARP1: NMDA receptor- 97.0 0.21 4.6E-06 44.0 20.0 182 30-234 39-299 (517)
63 PRK14574 hmsH outer membrane p 97.0 0.13 2.9E-06 47.8 18.3 91 42-149 305-395 (822)
64 PRK10049 pgaA outer membrane p 97.0 0.12 2.7E-06 48.0 18.3 176 35-243 278-472 (765)
65 KOG1840 Kinesin light chain [C 96.9 0.27 5.8E-06 43.1 19.4 174 39-224 251-477 (508)
66 KOG1840 Kinesin light chain [C 96.9 0.11 2.3E-06 45.5 16.0 157 64-249 199-395 (508)
67 COG2956 Predicted N-acetylgluc 96.8 0.18 4E-06 40.9 15.4 194 47-250 53-278 (389)
68 PF04733 Coatomer_E: Coatomer 96.8 0.22 4.7E-06 40.5 18.5 193 50-248 53-286 (290)
69 PRK12370 invasion protein regu 96.7 0.15 3.3E-06 45.5 16.4 79 15-94 321-402 (553)
70 cd05804 StaR_like StaR_like; a 96.7 0.29 6.3E-06 40.8 19.8 198 47-250 98-336 (355)
71 PRK15359 type III secretion sy 96.6 0.1 2.3E-06 37.6 12.2 96 66-226 26-121 (144)
72 TIGR02552 LcrH_SycD type III s 96.5 0.12 2.6E-06 36.5 11.8 92 35-150 23-114 (135)
73 PF09295 ChAPs: ChAPs (Chs5p-A 96.5 0.061 1.3E-06 45.5 11.6 107 37-148 177-295 (395)
74 PRK11189 lipoprotein NlpI; Pro 96.5 0.38 8.2E-06 39.3 17.8 54 39-93 74-127 (296)
75 COG4783 Putative Zn-dependent 96.4 0.36 7.7E-06 41.3 15.5 129 47-226 324-454 (484)
76 PRK15359 type III secretion sy 96.4 0.21 4.7E-06 35.9 13.1 91 35-149 30-120 (144)
77 KOG3941 Intermediate in Toll s 96.3 0.032 6.8E-07 44.4 8.3 100 48-149 53-187 (406)
78 COG3071 HemY Uncharacterized e 96.3 0.55 1.2E-05 39.1 21.7 205 46-257 101-397 (400)
79 KOG2003 TPR repeat-containing 96.3 0.072 1.6E-06 45.1 10.5 138 10-149 539-688 (840)
80 PF09295 ChAPs: ChAPs (Chs5p-A 96.2 0.14 3.1E-06 43.3 12.3 112 67-224 172-295 (395)
81 KOG2002 TPR-containing nuclear 96.2 0.091 2E-06 48.4 11.6 78 47-148 630-707 (1018)
82 PF05843 Suf: Suppressor of fo 96.1 0.16 3.5E-06 41.1 11.6 29 65-93 2-30 (280)
83 PRK10370 formate-dependent nit 96.0 0.48 1E-05 36.2 14.4 101 62-228 71-175 (198)
84 cd00189 TPR Tetratricopeptide 96.0 0.2 4.3E-06 31.7 10.4 95 66-225 2-96 (100)
85 COG5010 TadD Flp pilus assembl 96.0 0.43 9.3E-06 37.5 13.0 65 62-149 98-162 (257)
86 TIGR02552 LcrH_SycD type III s 96.0 0.31 6.6E-06 34.3 11.6 100 63-227 16-115 (135)
87 KOG1070 rRNA processing protei 95.9 0.64 1.4E-05 45.0 15.9 187 47-255 1443-1668(1710)
88 PF14559 TPR_19: Tetratricopep 95.9 0.031 6.7E-07 34.2 5.5 52 75-150 2-54 (68)
89 KOG2047 mRNA splicing factor [ 95.9 1.2 2.6E-05 39.8 17.3 100 47-150 156-277 (835)
90 COG4783 Putative Zn-dependent 95.8 0.73 1.6E-05 39.5 14.4 105 118-250 336-454 (484)
91 PF12921 ATP13: Mitochondrial 95.8 0.099 2.1E-06 36.7 8.0 81 120-226 1-81 (126)
92 KOG0547 Translocase of outer m 95.8 0.51 1.1E-05 40.6 13.3 195 42-247 339-563 (606)
93 COG3063 PilF Tfp pilus assembl 95.7 0.71 1.5E-05 35.8 14.9 144 65-252 36-204 (250)
94 PRK11189 lipoprotein NlpI; Pro 95.7 0.95 2.1E-05 36.9 17.5 100 47-149 44-160 (296)
95 TIGR02795 tol_pal_ybgF tol-pal 95.6 0.41 8.9E-06 32.5 12.3 104 65-227 3-106 (119)
96 KOG2076 RNA polymerase III tra 95.6 0.86 1.9E-05 42.0 14.9 188 63-250 413-695 (895)
97 PF09976 TPR_21: Tetratricopep 95.5 0.51 1.1E-05 33.9 11.4 66 65-151 13-78 (145)
98 KOG0547 Translocase of outer m 95.5 0.78 1.7E-05 39.6 13.5 172 38-224 369-564 (606)
99 TIGR03302 OM_YfiO outer membra 95.5 0.92 2E-05 35.4 15.2 55 39-93 43-99 (235)
100 KOG2003 TPR repeat-containing 95.4 0.77 1.7E-05 39.2 13.2 89 117-225 588-688 (840)
101 PRK15179 Vi polysaccharide bio 95.4 2.1 4.5E-05 39.4 17.0 30 63-92 85-114 (694)
102 KOG1914 mRNA cleavage and poly 95.3 1.9 4.1E-05 37.8 15.9 42 62-106 18-60 (656)
103 COG5010 TadD Flp pilus assembl 95.3 0.33 7.2E-06 38.1 10.0 106 120-245 99-226 (257)
104 PRK15179 Vi polysaccharide bio 95.3 2.4 5.3E-05 39.0 17.6 146 39-252 96-247 (694)
105 TIGR03302 OM_YfiO outer membra 95.2 1.1 2.4E-05 34.9 14.4 158 62-251 31-233 (235)
106 KOG1129 TPR repeat-containing 95.2 1.3 2.7E-05 36.4 13.1 65 61-149 220-284 (478)
107 PF03704 BTAD: Bacterial trans 95.1 0.22 4.8E-06 35.8 8.3 61 66-149 64-124 (146)
108 PF13424 TPR_12: Tetratricopep 95.0 0.17 3.7E-06 31.9 6.7 67 64-148 5-73 (78)
109 KOG1915 Cell cycle control pro 95.0 2 4.3E-05 37.1 14.2 101 47-149 91-202 (677)
110 KOG3081 Vesicle coat complex C 94.8 1.6 3.5E-05 34.7 13.4 35 193-227 203-237 (299)
111 KOG2047 mRNA splicing factor [ 94.8 2.7 5.8E-05 37.7 14.9 157 66-226 104-277 (835)
112 PF13170 DUF4003: Protein of u 94.7 1 2.2E-05 36.8 11.9 60 47-106 80-148 (297)
113 PF12895 Apc3: Anaphase-promot 94.7 0.075 1.6E-06 34.2 4.6 76 46-146 6-83 (84)
114 PRK10370 formate-dependent nit 94.6 1.2 2.6E-05 34.0 11.4 112 15-151 56-174 (198)
115 PF14559 TPR_19: Tetratricopep 94.5 0.23 5E-06 30.2 6.3 59 43-104 5-63 (68)
116 PF04733 Coatomer_E: Coatomer 94.5 1.1 2.4E-05 36.5 11.7 105 62-189 129-249 (290)
117 TIGR02795 tol_pal_ybgF tol-pal 94.4 0.99 2.1E-05 30.6 11.3 91 40-150 13-105 (119)
118 PF05843 Suf: Suppressor of fo 94.4 1.4 3E-05 35.7 12.0 93 34-150 6-99 (280)
119 PF13432 TPR_16: Tetratricopep 94.3 0.28 6.2E-06 29.6 6.2 56 70-149 3-59 (65)
120 PLN03088 SGT1, suppressor of 94.2 1.3 2.9E-05 37.2 11.9 83 43-150 16-99 (356)
121 cd00189 TPR Tetratricopeptide 94.0 0.91 2E-05 28.5 9.6 84 42-149 13-96 (100)
122 KOG1915 Cell cycle control pro 93.9 4 8.6E-05 35.4 19.0 106 120-227 321-467 (677)
123 PF13414 TPR_11: TPR repeat; P 93.7 0.56 1.2E-05 28.6 6.8 63 63-149 2-66 (69)
124 PF03704 BTAD: Bacterial trans 93.6 0.66 1.4E-05 33.3 8.0 59 33-92 66-124 (146)
125 PF12895 Apc3: Anaphase-promot 93.4 0.35 7.6E-06 31.0 5.7 49 77-146 2-50 (84)
126 PF12569 NARP1: NMDA receptor- 93.3 5.5 0.00012 35.3 18.3 82 12-93 124-223 (517)
127 KOG3941 Intermediate in Toll s 93.2 0.73 1.6E-05 37.0 8.0 75 110-190 96-173 (406)
128 KOG2076 RNA polymerase III tra 93.2 7.2 0.00016 36.3 22.3 64 29-93 173-236 (895)
129 KOG2002 TPR-containing nuclear 93.2 7.7 0.00017 36.5 17.9 41 110-150 441-481 (1018)
130 KOG0495 HAT repeat protein [RN 92.7 7.5 0.00016 35.2 17.4 69 158-227 737-847 (913)
131 PF13424 TPR_12: Tetratricopep 92.7 0.74 1.6E-05 28.9 6.4 68 121-224 5-73 (78)
132 KOG1914 mRNA cleavage and poly 92.6 6.1 0.00013 34.8 13.1 101 65-167 367-479 (656)
133 PLN03088 SGT1, suppressor of 92.6 3 6.5E-05 35.1 11.5 91 72-227 10-100 (356)
134 PF11207 DUF2989: Protein of u 92.5 3.1 6.8E-05 31.7 10.3 78 44-141 121-198 (203)
135 KOG4340 Uncharacterized conser 92.5 5 0.00011 32.7 12.4 88 59-149 5-106 (459)
136 KOG3081 Vesicle coat complex C 92.4 3.7 8.1E-05 32.7 10.8 76 71-150 144-236 (299)
137 COG3629 DnrI DNA-binding trans 92.3 3.1 6.7E-05 33.6 10.6 99 14-130 137-236 (280)
138 KOG4570 Uncharacterized conser 92.1 0.69 1.5E-05 37.6 6.6 94 57-150 57-164 (418)
139 PF09976 TPR_21: Tetratricopep 91.8 2.1 4.5E-05 30.7 8.6 100 47-146 29-143 (145)
140 PLN03098 LPA1 LOW PSII ACCUMUL 91.7 1.5 3.2E-05 37.7 8.5 64 63-150 74-141 (453)
141 PF04840 Vps16_C: Vps16, C-ter 91.6 1.2 2.6E-05 36.8 7.9 76 118-219 205-284 (319)
142 PF13371 TPR_9: Tetratricopept 91.6 1.1 2.4E-05 27.5 6.2 57 71-150 2-58 (73)
143 TIGR03504 FimV_Cterm FimV C-te 91.5 0.35 7.5E-06 26.9 3.2 39 127-165 5-43 (44)
144 cd05804 StaR_like StaR_like; a 91.2 7.8 0.00017 32.2 15.0 133 71-224 50-213 (355)
145 COG3629 DnrI DNA-binding trans 91.2 3.3 7.1E-05 33.4 9.6 82 66-184 155-236 (280)
146 PF13432 TPR_16: Tetratricopep 91.0 1.2 2.6E-05 26.7 5.7 54 39-93 7-60 (65)
147 PRK10803 tol-pal system protei 90.4 8 0.00017 31.0 11.7 103 64-226 143-246 (263)
148 CHL00033 ycf3 photosystem I as 90.4 5.6 0.00012 29.2 12.4 68 62-149 33-100 (168)
149 KOG2053 Mitochondrial inherita 90.3 16 0.00034 34.3 19.0 205 11-228 22-257 (932)
150 KOG0985 Vesicle coat protein c 90.1 10 0.00022 36.2 12.7 110 33-156 1052-1168(1666)
151 KOG3616 Selective LIM binding 89.8 1.1 2.4E-05 40.7 6.4 13 235-247 896-908 (1636)
152 PF13176 TPR_7: Tetratricopept 89.8 0.88 1.9E-05 23.9 3.8 26 123-148 1-26 (36)
153 KOG3060 Uncharacterized conser 89.7 8.8 0.00019 30.5 15.3 151 77-248 25-218 (289)
154 KOG0495 HAT repeat protein [RN 89.7 16 0.00034 33.3 20.1 53 197-249 618-679 (913)
155 KOG4340 Uncharacterized conser 89.6 5 0.00011 32.6 9.3 40 67-106 147-186 (459)
156 PF13176 TPR_7: Tetratricopept 89.5 0.84 1.8E-05 23.9 3.6 26 66-91 1-26 (36)
157 PRK10153 DNA-binding transcrip 89.4 15 0.00033 32.7 14.4 131 115-249 331-481 (517)
158 KOG1125 TPR repeat-containing 88.6 11 0.00025 33.3 11.4 79 47-149 412-492 (579)
159 PF13762 MNE1: Mitochondrial s 88.6 5.8 0.00013 28.6 8.3 93 95-187 10-127 (145)
160 KOG1173 Anaphase-promoting com 88.6 5.2 0.00011 35.3 9.3 124 39-166 390-532 (611)
161 KOG0553 TPR repeat-containing 88.5 3.3 7.1E-05 33.5 7.6 91 131-244 91-196 (304)
162 PRK02603 photosystem I assembl 87.8 9.1 0.0002 28.2 14.4 66 63-149 34-100 (172)
163 PF02284 COX5A: Cytochrome c o 87.6 3.8 8.3E-05 27.5 6.3 38 112-149 36-73 (108)
164 PF13428 TPR_14: Tetratricopep 87.2 3.3 7.1E-05 22.7 5.2 30 65-94 2-31 (44)
165 PF13414 TPR_11: TPR repeat; P 86.4 5.3 0.00011 24.1 6.9 64 120-225 2-66 (69)
166 PLN03098 LPA1 LOW PSII ACCUMUL 86.3 8.2 0.00018 33.3 9.2 94 120-252 74-176 (453)
167 COG5107 RNA14 Pre-mRNA 3'-end 86.1 9.4 0.0002 33.0 9.3 83 64-146 397-491 (660)
168 PF13374 TPR_10: Tetratricopep 85.8 2 4.3E-05 22.8 3.8 29 197-225 2-30 (42)
169 PF13374 TPR_10: Tetratricopep 85.7 2.4 5.2E-05 22.5 4.1 29 64-92 2-30 (42)
170 KOG3785 Uncharacterized conser 85.6 20 0.00044 30.0 12.8 46 128-173 468-518 (557)
171 PF13428 TPR_14: Tetratricopep 85.2 2.2 4.7E-05 23.4 3.8 28 123-150 3-30 (44)
172 KOG3616 Selective LIM binding 85.2 24 0.00051 32.8 11.7 100 123-224 793-909 (1636)
173 KOG1173 Anaphase-promoting com 85.2 27 0.00059 31.1 16.0 28 64-91 312-339 (611)
174 KOG0985 Vesicle coat protein c 85.1 20 0.00043 34.5 11.5 20 125-144 1170-1189(1666)
175 PRK02603 photosystem I assembl 84.9 13 0.00029 27.3 13.4 54 39-92 45-100 (172)
176 KOG1125 TPR repeat-containing 84.7 28 0.00061 31.0 17.0 157 47-226 337-527 (579)
177 PF09205 DUF1955: Domain of un 84.7 4.8 0.0001 28.6 5.9 113 134-252 15-151 (161)
178 KOG4162 Predicted calmodulin-b 84.6 34 0.00073 31.7 16.4 195 53-248 312-574 (799)
179 PRK10803 tol-pal system protei 84.6 19 0.00042 28.9 10.8 86 43-150 157-246 (263)
180 smart00299 CLH Clathrin heavy 84.2 12 0.00027 26.4 8.4 43 35-78 13-55 (140)
181 cd00923 Cyt_c_Oxidase_Va Cytoc 83.8 5.4 0.00012 26.5 5.5 38 112-149 33-70 (103)
182 KOG4570 Uncharacterized conser 83.5 3.8 8.2E-05 33.5 5.7 63 31-94 103-165 (418)
183 COG3063 PilF Tfp pilus assembl 83.3 20 0.00043 28.1 16.4 149 36-228 42-204 (250)
184 PRK10153 DNA-binding transcrip 83.2 33 0.00073 30.6 15.7 125 58-227 331-483 (517)
185 KOG1128 Uncharacterized conser 83.1 38 0.00083 31.2 12.4 166 36-226 431-616 (777)
186 PF12688 TPR_5: Tetratrico pep 83.1 13 0.00028 25.8 9.8 87 42-148 14-102 (120)
187 PF13170 DUF4003: Protein of u 82.4 26 0.00056 28.7 17.9 41 110-150 86-132 (297)
188 smart00299 CLH Clathrin heavy 82.3 5.3 0.00012 28.3 5.8 81 123-223 9-95 (140)
189 PF04840 Vps16_C: Vps16, C-ter 82.3 7.5 0.00016 32.2 7.3 105 116-243 172-284 (319)
190 PRK14720 transcript cleavage f 82.1 49 0.0011 31.7 15.6 140 63-227 30-199 (906)
191 PF14938 SNAP: Soluble NSF att 81.9 26 0.00056 28.4 13.3 168 65-249 36-224 (282)
192 PRK14720 transcript cleavage f 81.9 50 0.0011 31.7 13.6 136 65-227 117-253 (906)
193 cd00923 Cyt_c_Oxidase_Va Cytoc 81.6 13 0.00028 24.7 8.1 69 47-117 25-95 (103)
194 COG5107 RNA14 Pre-mRNA 3'-end 81.5 25 0.00054 30.6 10.0 66 158-223 415-492 (660)
195 PF11663 Toxin_YhaV: Toxin wit 80.6 1.6 3.5E-05 30.8 2.4 26 47-74 113-138 (140)
196 PF13371 TPR_9: Tetratricopept 80.4 6.9 0.00015 23.8 5.2 55 39-94 5-59 (73)
197 PF12688 TPR_5: Tetratrico pep 80.3 17 0.00037 25.3 10.4 57 71-149 8-66 (120)
198 TIGR03504 FimV_Cterm FimV C-te 79.6 5.2 0.00011 22.2 3.8 25 203-227 5-29 (44)
199 PF11848 DUF3368: Domain of un 79.4 7.9 0.00017 21.9 4.7 36 71-106 9-44 (48)
200 KOG2280 Vacuolar assembly/sort 78.8 56 0.0012 30.3 11.7 122 47-219 666-792 (829)
201 PF09868 DUF2095: Uncharacteri 78.3 8.2 0.00018 26.3 5.1 45 126-171 66-110 (128)
202 KOG1538 Uncharacterized conser 77.7 57 0.0012 29.9 12.6 47 202-250 778-846 (1081)
203 PRK15363 pathogenicity island 77.5 25 0.00055 25.7 14.6 97 64-226 35-132 (157)
204 PF07079 DUF1347: Protein of u 76.4 52 0.0011 28.7 14.9 39 68-106 132-174 (549)
205 KOG3617 WD40 and TPR repeat-co 76.3 72 0.0016 30.3 11.9 16 133-148 924-939 (1416)
206 KOG4648 Uncharacterized conser 75.3 5.5 0.00012 33.0 4.4 75 129-224 105-185 (536)
207 PF02284 COX5A: Cytochrome c o 75.2 22 0.00048 23.9 9.0 58 47-106 28-86 (108)
208 PF00515 TPR_1: Tetratricopept 75.0 8.9 0.00019 19.2 4.1 29 65-93 2-30 (34)
209 PF07721 TPR_4: Tetratricopept 74.4 6.7 0.00014 18.7 3.0 23 66-88 3-25 (26)
210 PF08311 Mad3_BUB1_I: Mad3/BUB 73.9 28 0.0006 24.4 7.5 79 11-89 42-124 (126)
211 KOG3617 WD40 and TPR repeat-co 71.8 91 0.002 29.7 11.3 48 39-92 738-785 (1416)
212 PF07035 Mic1: Colon cancer-as 71.8 38 0.00083 25.1 11.1 89 50-146 15-114 (167)
213 KOG1127 TPR repeat-containing 71.5 1E+02 0.0022 29.9 14.3 132 16-149 476-624 (1238)
214 PRK15363 pathogenicity island 71.5 37 0.00081 24.8 9.8 87 40-150 46-132 (157)
215 PF10366 Vps39_1: Vacuolar sor 71.3 29 0.00063 23.5 9.0 50 199-248 41-93 (108)
216 PF04053 Coatomer_WDAD: Coatom 71.1 44 0.00096 29.1 9.2 123 64-222 295-427 (443)
217 PF13181 TPR_8: Tetratricopept 70.4 12 0.00026 18.7 4.1 28 65-92 2-29 (34)
218 PF07719 TPR_2: Tetratricopept 69.5 12 0.00027 18.5 4.1 29 65-93 2-30 (34)
219 CHL00033 ycf3 photosystem I as 69.3 41 0.0009 24.5 10.6 55 39-93 45-101 (168)
220 KOG1174 Anaphase-promoting com 69.3 75 0.0016 27.5 13.6 30 191-220 361-391 (564)
221 KOG2376 Signal recognition par 68.3 92 0.002 28.1 17.1 99 47-152 30-141 (652)
222 PF13431 TPR_17: Tetratricopep 68.2 6.4 0.00014 20.3 2.3 22 63-84 12-33 (34)
223 PRK10564 maltose regulon perip 66.7 12 0.00025 30.5 4.4 46 59-104 251-297 (303)
224 PF02259 FAT: FAT domain; Int 66.7 72 0.0016 26.3 14.5 167 62-249 29-212 (352)
225 COG4003 Uncharacterized protei 66.6 18 0.0004 23.0 4.3 26 126-151 36-61 (98)
226 PF11663 Toxin_YhaV: Toxin wit 66.5 3.9 8.5E-05 28.9 1.5 22 235-256 109-130 (140)
227 PF07035 Mic1: Colon cancer-as 66.3 51 0.0011 24.4 13.0 105 102-223 10-115 (167)
228 KOG2796 Uncharacterized conser 65.8 71 0.0015 25.9 12.5 59 48-106 196-254 (366)
229 PF10300 DUF3808: Protein of u 65.0 99 0.0021 27.3 10.2 27 123-149 307-333 (468)
230 PF10366 Vps39_1: Vacuolar sor 64.0 30 0.00065 23.5 5.5 27 66-92 41-67 (108)
231 KOG0553 TPR repeat-containing 63.1 83 0.0018 25.7 9.8 83 47-157 99-183 (304)
232 PF08631 SPO22: Meiosis protei 63.0 80 0.0017 25.5 15.1 59 197-255 121-191 (278)
233 PF09205 DUF1955: Domain of un 62.7 54 0.0012 23.5 8.1 35 118-152 117-151 (161)
234 COG4235 Cytochrome c biogenesi 62.3 85 0.0018 25.6 11.1 88 62-151 154-257 (287)
235 PF13174 TPR_6: Tetratricopept 62.0 16 0.00036 17.8 3.2 25 69-93 5-29 (33)
236 PRK11639 zinc uptake transcrip 61.9 39 0.00084 25.1 6.2 60 112-172 17-76 (169)
237 PF00637 Clathrin: Region in C 61.4 5.3 0.00011 28.4 1.5 53 36-88 14-66 (143)
238 PF14853 Fis1_TPR_C: Fis1 C-te 61.3 30 0.00065 20.0 4.6 39 127-167 7-45 (53)
239 PF14689 SPOB_a: Sensor_kinase 61.1 15 0.00032 22.1 3.2 25 125-149 27-51 (62)
240 PF10602 RPN7: 26S proteasome 60.8 45 0.00098 24.9 6.5 65 64-148 36-100 (177)
241 PRK10564 maltose regulon perip 60.8 13 0.00028 30.3 3.7 38 192-229 251-289 (303)
242 COG4649 Uncharacterized protei 60.4 71 0.0015 24.1 11.1 119 120-239 58-209 (221)
243 PF04184 ST7: ST7 protein; In 59.3 1.3E+02 0.0027 26.8 9.4 60 69-149 264-323 (539)
244 PF13929 mRNA_stabil: mRNA sta 59.3 77 0.0017 25.9 7.7 30 116-145 233-262 (292)
245 PF11846 DUF3366: Domain of un 59.2 69 0.0015 24.1 7.4 34 116-149 139-172 (193)
246 PF12926 MOZART2: Mitotic-spin 59.1 40 0.00087 21.9 5.0 44 50-93 29-72 (88)
247 PF14689 SPOB_a: Sensor_kinase 57.8 17 0.00037 21.8 3.1 26 200-225 26-51 (62)
248 COG0735 Fur Fe2+/Zn2+ uptake r 57.0 32 0.0007 24.7 5.0 60 112-172 12-71 (145)
249 cd07153 Fur_like Ferric uptake 56.9 36 0.00078 23.1 5.1 44 127-170 6-49 (116)
250 KOG2053 Mitochondrial inherita 56.4 1.9E+02 0.0041 27.7 12.5 76 47-148 27-104 (932)
251 PF09435 DUF2015: Fungal prote 56.2 32 0.0007 24.1 4.5 34 217-257 88-123 (128)
252 TIGR02561 HrpB1_HrpK type III 56.1 43 0.00092 24.3 5.3 41 209-251 22-74 (153)
253 KOG1127 TPR repeat-containing 55.6 2.1E+02 0.0045 28.0 14.2 118 120-247 525-656 (1238)
254 KOG1156 N-terminal acetyltrans 55.6 1.7E+02 0.0036 26.9 14.3 54 194-249 366-433 (700)
255 PF10602 RPN7: 26S proteasome 54.9 30 0.00066 25.8 4.7 32 199-230 38-69 (177)
256 PF01475 FUR: Ferric uptake re 54.8 29 0.00062 23.9 4.3 45 126-170 12-56 (120)
257 KOG4077 Cytochrome c oxidase, 54.7 74 0.0016 22.5 7.9 68 26-93 41-113 (149)
258 PRK09462 fur ferric uptake reg 54.5 78 0.0017 22.7 7.0 60 112-172 8-68 (148)
259 PF14669 Asp_Glu_race_2: Putat 54.1 48 0.001 25.3 5.4 70 68-145 136-205 (233)
260 PF11846 DUF3366: Domain of un 54.0 47 0.001 25.0 5.7 34 59-92 139-172 (193)
261 KOG0548 Molecular co-chaperone 53.9 53 0.0011 29.1 6.4 76 129-224 10-97 (539)
262 PF09613 HrpB1_HrpK: Bacterial 53.5 46 0.00099 24.5 5.2 41 208-250 21-73 (160)
263 COG0735 Fur Fe2+/Zn2+ uptake r 53.0 52 0.0011 23.7 5.5 63 50-117 7-70 (145)
264 KOG3060 Uncharacterized conser 52.7 1.2E+02 0.0026 24.4 12.7 108 39-149 62-182 (289)
265 KOG2796 Uncharacterized conser 51.5 1.3E+02 0.0028 24.4 13.5 36 114-149 205-240 (366)
266 KOG4077 Cytochrome c oxidase, 50.9 42 0.00091 23.7 4.4 38 112-149 75-112 (149)
267 KOG2114 Vacuolar assembly/sort 50.7 92 0.002 29.4 7.6 117 131-248 378-517 (933)
268 COG1729 Uncharacterized protei 50.5 1.3E+02 0.0029 24.2 9.1 28 122-150 143-170 (262)
269 PF09613 HrpB1_HrpK: Bacterial 50.0 1E+02 0.0022 22.7 8.3 62 65-150 8-73 (160)
270 PF13762 MNE1: Mitochondrial s 49.3 99 0.0021 22.4 9.0 37 55-91 28-66 (145)
271 PF13281 DUF4071: Domain of un 49.1 1.7E+02 0.0037 25.0 22.0 188 47-250 159-357 (374)
272 PF04053 Coatomer_WDAD: Coatom 49.0 70 0.0015 28.0 6.6 94 38-146 327-427 (443)
273 PF10475 DUF2450: Protein of u 48.2 1.5E+02 0.0033 24.2 9.4 68 123-190 129-212 (291)
274 PF09868 DUF2095: Uncharacteri 48.2 63 0.0014 22.2 4.8 45 202-252 66-110 (128)
275 PF13929 mRNA_stabil: mRNA sta 48.2 1.5E+02 0.0033 24.2 14.4 57 116-190 197-253 (292)
276 smart00777 Mad3_BUB1_I Mad3/BU 48.1 94 0.002 21.8 6.9 42 47-88 81-123 (125)
277 COG2976 Uncharacterized protei 47.9 1.2E+02 0.0026 23.3 6.7 86 127-251 95-189 (207)
278 smart00028 TPR Tetratricopepti 47.4 30 0.00064 15.8 3.2 27 199-225 3-29 (34)
279 KOG2376 Signal recognition par 47.4 2.2E+02 0.0048 25.9 15.4 32 158-190 476-507 (652)
280 COG4235 Cytochrome c biogenesi 47.3 1.6E+02 0.0034 24.1 14.4 135 74-232 112-262 (287)
281 COG5108 RPO41 Mitochondrial DN 46.6 99 0.0022 28.6 7.0 25 126-150 33-57 (1117)
282 PF08461 HTH_12: Ribonuclease 45.8 65 0.0014 19.6 4.3 45 127-171 3-47 (66)
283 KOG2041 WD40 repeat protein [G 45.7 1.7E+02 0.0037 27.4 8.3 32 61-92 689-720 (1189)
284 COG3898 Uncharacterized membra 45.4 2E+02 0.0044 24.8 11.8 131 78-231 134-297 (531)
285 PRK10292 hypothetical protein; 44.8 70 0.0015 19.3 7.1 47 135-189 2-48 (69)
286 PF14938 SNAP: Soluble NSF att 44.4 1.7E+02 0.0036 23.6 11.1 70 64-150 155-225 (282)
287 TIGR02561 HrpB1_HrpK type III 44.0 1.2E+02 0.0027 22.0 8.6 64 65-151 8-74 (153)
288 COG4455 ImpE Protein of avirul 43.7 1.6E+02 0.0035 23.2 8.5 101 44-145 16-128 (273)
289 COG2987 HutU Urocanate hydrata 43.2 33 0.00071 29.7 3.5 57 134-190 216-279 (561)
290 PF10155 DUF2363: Uncharacteri 41.5 1.2E+02 0.0027 21.2 10.6 39 110-148 87-125 (126)
291 KOG0276 Vesicle coat complex C 41.2 1.4E+02 0.003 27.3 7.0 148 64-246 614-774 (794)
292 TIGR01228 hutU urocanate hydra 39.9 65 0.0014 28.4 4.8 48 209-258 206-253 (545)
293 KOG4555 TPR repeat-containing 39.8 1.4E+02 0.003 21.4 7.2 78 130-227 52-145 (175)
294 PRK04841 transcriptional regul 39.8 3.5E+02 0.0076 26.0 16.0 27 123-149 533-559 (903)
295 COG2987 HutU Urocanate hydrata 38.9 50 0.0011 28.6 4.0 48 209-258 215-262 (561)
296 PRK05414 urocanate hydratase; 38.9 69 0.0015 28.3 4.8 47 210-258 216-262 (556)
297 PF07864 DUF1651: Protein of u 38.2 41 0.0009 21.0 2.7 24 235-258 50-73 (75)
298 TIGR02328 conserved hypothetic 38.1 1.1E+02 0.0024 21.0 4.8 16 241-256 55-70 (120)
299 KOG1538 Uncharacterized conser 37.7 3.4E+02 0.0074 25.3 10.2 27 202-228 822-848 (1081)
300 KOG1174 Anaphase-promoting com 36.8 2.9E+02 0.0063 24.1 19.2 106 119-226 366-500 (564)
301 TIGR01228 hutU urocanate hydra 36.4 53 0.0012 28.9 3.8 57 134-190 207-270 (545)
302 PF14162 YozD: YozD-like prote 36.4 52 0.0011 18.8 2.5 19 238-256 12-30 (57)
303 PHA02875 ankyrin repeat protei 36.0 2.7E+02 0.006 23.7 9.8 96 50-145 49-156 (413)
304 PLN02789 farnesyltranstransfer 35.8 2.6E+02 0.0056 23.3 13.3 29 65-93 38-66 (320)
305 KOG0550 Molecular chaperone (D 35.7 2.2E+02 0.0048 24.7 7.2 55 75-148 260-314 (486)
306 PF11817 Foie-gras_1: Foie gra 35.4 1.9E+02 0.004 22.9 6.7 63 68-148 182-245 (247)
307 PF11207 DUF2989: Protein of u 35.3 1.4E+02 0.0031 22.9 5.6 27 192-218 173-199 (203)
308 PRK05414 urocanate hydratase; 34.9 55 0.0012 28.9 3.7 57 134-190 216-279 (556)
309 PF09454 Vps23_core: Vps23 cor 34.6 95 0.002 18.9 3.8 36 117-152 4-39 (65)
310 KOG0543 FKBP-type peptidyl-pro 34.3 3E+02 0.0066 23.6 11.4 121 73-249 217-354 (397)
311 PF05944 Phage_term_smal: Phag 34.2 1.7E+02 0.0037 20.7 6.2 52 177-231 31-82 (132)
312 PRK14956 DNA polymerase III su 34.1 3.4E+02 0.0074 24.2 10.4 107 49-166 186-295 (484)
313 COG4105 ComL DNA uptake lipopr 33.6 2.5E+02 0.0054 22.5 14.0 75 62-157 33-108 (254)
314 cd08819 CARD_MDA5_2 Caspase ac 33.4 1.4E+02 0.003 19.5 7.0 50 41-91 14-63 (88)
315 PF07079 DUF1347: Protein of u 33.1 3.5E+02 0.0075 24.0 8.7 50 123-187 130-179 (549)
316 KOG2280 Vacuolar assembly/sort 32.8 4.3E+02 0.0093 25.0 12.6 72 172-243 712-792 (829)
317 KOG4648 Uncharacterized conser 32.2 2.7E+02 0.0058 23.7 7.0 46 73-142 106-152 (536)
318 PF02184 HAT: HAT (Half-A-TPR) 32.0 74 0.0016 16.3 2.5 14 136-149 2-15 (32)
319 COG3947 Response regulator con 31.3 1.4E+02 0.0031 24.6 5.2 48 123-190 281-328 (361)
320 PRK09462 fur ferric uptake reg 31.1 1.5E+02 0.0033 21.2 5.1 51 54-105 7-59 (148)
321 COG1729 Uncharacterized protei 30.4 2.9E+02 0.0063 22.3 9.5 25 67-91 181-205 (262)
322 PF13281 DUF4071: Domain of un 30.1 3.5E+02 0.0077 23.1 16.8 108 63-189 140-253 (374)
323 cd07153 Fur_like Ferric uptake 29.6 1.3E+02 0.0028 20.3 4.4 32 47-78 18-49 (116)
324 PF04184 ST7: ST7 protein; In 29.5 4.1E+02 0.009 23.8 8.1 73 34-106 264-338 (539)
325 KOG1920 IkappaB kinase complex 29.5 4.6E+02 0.01 26.3 8.8 45 171-220 931-975 (1265)
326 KOG1156 N-terminal acetyltrans 28.7 4.8E+02 0.01 24.2 18.4 80 172-252 366-470 (700)
327 PRK08691 DNA polymerase III su 28.6 5.1E+02 0.011 24.4 13.1 88 56-155 192-279 (709)
328 PHA02875 ankyrin repeat protei 28.5 3.7E+02 0.008 22.9 10.4 10 71-80 39-48 (413)
329 PF10300 DUF3808: Protein of u 28.3 4.2E+02 0.0091 23.4 9.4 59 195-254 264-339 (468)
330 KOG4334 Uncharacterized conser 28.3 69 0.0015 28.1 3.2 96 115-210 409-573 (650)
331 PF01475 FUR: Ferric uptake re 28.2 1.2E+02 0.0026 20.7 4.0 30 69-98 12-41 (120)
332 PF07875 Coat_F: Coat F domain 28.0 1.4E+02 0.003 17.8 4.3 18 237-254 44-61 (64)
333 TIGR03236 dnd_assoc_1 dnd syst 27.6 85 0.0018 26.5 3.5 28 82-109 314-341 (363)
334 PRK15331 chaperone protein Sic 27.4 2.6E+02 0.0057 20.7 9.1 42 127-168 111-153 (165)
335 PF01175 Urocanase: Urocanase; 27.3 74 0.0016 28.1 3.2 48 209-258 205-252 (546)
336 KOG0550 Molecular chaperone (D 27.2 1.8E+02 0.0039 25.2 5.4 45 130-190 258-302 (486)
337 cd08785 CARD_CARD9-like Caspas 26.7 1.9E+02 0.004 18.8 5.5 51 42-96 12-65 (86)
338 PF11264 ThylakoidFormat: Thyl 26.0 3.2E+02 0.0069 21.3 11.3 65 155-225 136-205 (216)
339 PRK14963 DNA polymerase III su 25.9 4.8E+02 0.011 23.3 10.6 96 47-155 179-275 (504)
340 PF07443 HARP: HepA-related pr 25.8 35 0.00077 20.0 0.8 30 47-76 10-39 (55)
341 PRK07003 DNA polymerase III su 25.8 6E+02 0.013 24.4 12.3 97 47-155 182-279 (830)
342 cd08332 CARD_CASP2 Caspase act 25.8 2E+02 0.0042 18.8 6.1 44 47-94 21-64 (90)
343 COG2405 Predicted nucleic acid 25.3 1.6E+02 0.0035 21.2 4.0 36 71-106 116-151 (157)
344 PF01175 Urocanase: Urocanase; 24.6 64 0.0014 28.5 2.4 56 134-189 206-268 (546)
345 cd00280 TRFH Telomeric Repeat 24.5 3.2E+02 0.007 20.8 8.1 25 202-226 116-140 (200)
346 PF15297 CKAP2_C: Cytoskeleton 24.5 4.4E+02 0.0095 22.3 7.0 63 42-106 116-182 (353)
347 cd00280 TRFH Telomeric Repeat 24.4 2.4E+02 0.0053 21.4 5.1 24 126-149 116-139 (200)
348 PF04190 DUF410: Protein of un 24.4 3.7E+02 0.0081 21.5 8.5 72 148-220 41-113 (260)
349 PRK11639 zinc uptake transcrip 24.3 3E+02 0.0065 20.3 6.5 49 139-190 27-75 (169)
350 PF06368 Met_asp_mut_E: Methyl 23.8 80 0.0017 27.3 2.8 23 158-180 155-177 (441)
351 PLN02789 farnesyltranstransfer 23.7 4.3E+02 0.0093 22.0 17.4 102 47-152 55-173 (320)
352 KOG4162 Predicted calmodulin-b 23.5 6.4E+02 0.014 23.9 19.0 89 59-149 257-351 (799)
353 PF05664 DUF810: Protein of un 23.4 6.2E+02 0.014 23.7 8.5 35 58-92 211-249 (677)
354 COG1466 HolA DNA polymerase II 23.2 4.4E+02 0.0095 21.9 7.5 88 53-154 151-241 (334)
355 smart00804 TAP_C C-terminal do 23.2 1.1E+02 0.0024 18.5 2.6 22 235-256 39-61 (63)
356 smart00164 TBC Domain in Tre-2 23.0 2.1E+02 0.0046 21.3 4.9 24 85-108 152-176 (199)
357 PF09986 DUF2225: Uncharacteri 22.8 3.7E+02 0.0079 20.8 7.3 41 205-246 173-213 (214)
358 PF14669 Asp_Glu_race_2: Putat 22.6 3.7E+02 0.0079 20.8 14.9 181 58-259 2-216 (233)
359 smart00386 HAT HAT (Half-A-TPR 22.5 1E+02 0.0023 14.4 3.7 16 78-93 1-16 (33)
360 cd08329 CARD_BIRC2_BIRC3 Caspa 22.5 2.4E+02 0.0051 18.6 6.3 43 48-94 25-67 (94)
361 PF08542 Rep_fac_C: Replicatio 22.5 2.1E+02 0.0045 18.1 4.2 35 62-97 3-37 (89)
362 PF10579 Rapsyn_N: Rapsyn N-te 22.5 1.8E+02 0.0038 18.7 3.5 43 44-86 21-65 (80)
363 COG1608 Predicted archaeal kin 22.3 1.1E+02 0.0025 24.2 3.2 43 212-254 79-130 (252)
364 PF06711 DUF1198: Protein of u 21.9 1.8E+02 0.004 20.8 3.8 44 205-248 80-123 (148)
365 KOG4555 TPR repeat-containing 21.6 3.2E+02 0.0069 19.7 5.8 54 73-149 52-105 (175)
366 TIGR01503 MthylAspMut_E methyl 21.6 3E+02 0.0066 24.2 5.8 44 47-93 72-115 (480)
367 PF01335 DED: Death effector d 21.4 2E+02 0.0044 18.2 3.8 42 47-89 38-79 (84)
368 PF11491 DUF3213: Protein of u 21.1 24 0.00052 22.5 -0.6 20 194-213 21-40 (88)
369 cd08324 CARD_NOD1_CARD4 Caspas 20.9 2.5E+02 0.0054 18.2 4.7 34 27-60 27-60 (85)
370 PF12793 SgrR_N: Sugar transpo 20.9 2E+02 0.0042 19.8 3.8 21 214-234 34-54 (115)
371 KOG0508 Ankyrin repeat protein 20.7 83 0.0018 27.6 2.3 93 49-145 97-204 (615)
372 PRK05301 pyrroloquinoline quin 20.7 5.2E+02 0.011 21.8 8.7 113 137-252 48-183 (378)
373 KOG2908 26S proteasome regulat 20.7 5.3E+02 0.011 21.9 13.8 74 65-157 76-156 (380)
374 cd02679 MIT_spastin MIT: domai 20.7 1.8E+02 0.004 18.5 3.4 47 77-149 21-67 (79)
375 PF01995 DUF128: Domain of unk 20.3 2.6E+02 0.0057 22.1 4.8 26 207-232 32-57 (236)
376 COG5053 CDC33 Translation init 20.1 2.2E+02 0.0047 21.7 4.0 51 61-119 52-102 (217)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-40 Score=301.51 Aligned_cols=233 Identities=19% Similarity=0.204 Sum_probs=181.9
Q ss_pred ccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH
Q 041786 28 DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107 (260)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 107 (260)
+..+++.++..+.+++....|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44556778888888888888888888888888888888888888888888888888888888888888888888888885
Q ss_pred HH-------------HHHHh--CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH---------------
Q 041786 108 CF-------------VRMIR--KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR--------------- 157 (260)
Q Consensus 108 ~~-------------~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------- 157 (260)
++ ++|.. .|+.||..+|++||.+|+++|++++|.++|++|.+.|+.|+..
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 54 55654 5788888888888888888888888888888888888766654
Q ss_pred -HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 158 -SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 158 -~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
+|.++|++|.+.|+.||..+|+++|++|++.|+ .|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 778888888888888888888888888888777 566777777777777777777777777777777
Q ss_pred HHCCCCcCCCc-----------ccHHHHHHHHHHHHhcCCCCCCCCCC
Q 041786 224 VEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVYA 260 (260)
Q Consensus 224 ~~~~~~p~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~ty~ 260 (260)
.+.|+.|+..+ |++++|.++|++|...|+.||..||+
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 77777766655 67777777777777677777766653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-39 Score=297.42 Aligned_cols=245 Identities=16% Similarity=0.158 Sum_probs=228.0
Q ss_pred hhhHHHHHHHH----cccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 16 AAVNHIANIVR----HDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 16 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
.+..-+..|.+ ++..+++.++..+.+.+...+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555554 45666788999999999999999999999999999999999999999999999999999999998
Q ss_pred h--cCCCCcHHHHHHHHHHH-------------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 041786 92 A--FNCQQCVLLYNSLHVCF-------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156 (260)
Q Consensus 92 ~--~~~~~~~~~~~~li~~~-------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 156 (260)
. .|+.||..+|+++|.++ +.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 6 68999999999999665 78999999999999999999999999999999999999999999996
Q ss_pred H----------------HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-------------CCCCcchHHHHHHHHhh
Q 041786 157 R----------------SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAV 207 (260)
Q Consensus 157 ~----------------~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-------------~~~~~~~~t~~~li~~~ 207 (260)
. +|.++|..|.+.|+.||..+|++||.+|++.|+ .++.||..+||.||.+|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4 899999999999999999999999999999999 68899999999999999
Q ss_pred hhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHhcCCCCCCCCCC
Q 041786 208 SKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRPVYA 260 (260)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~ty~ 260 (260)
++.|++++|.++|++|.+.|+.|+..+ |++++|.++|++|.+.|+.||..+|+
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyn 793 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 999999999999999999999999888 99999999999999999999998874
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=272.43 Aligned_cols=230 Identities=14% Similarity=0.120 Sum_probs=175.8
Q ss_pred cccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 27 HDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
++..+.+.+...+.+++....|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|.+.|+.|+..||+.++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 4455567777888888888888888888864 688889999999999999999999999998888888888887777
Q ss_pred HHH-------------HHHHhCCC-------------------------------CCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 107 VCF-------------VRMIRKGF-------------------------------VPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 107 ~~~-------------~~m~~~g~-------------------------------~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
.++ ..+.+.|+ .+|.++||+||.+|++.|++++|.+
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 332 22333343 4555666666666666666666666
Q ss_pred HHHHHHhCCCCCCHH----------------HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC---------CCCCcch
Q 041786 143 FLQELSDKGFNPPVR----------------SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE---------LGLCADV 197 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~----------------~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~~~~~ 197 (260)
+|++|.+.|+.|+.. .|.+++..|.+.|+.||..+|++||++|++.|+ .-..||+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 666666666666644 566677777777777777777777777777776 3346888
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHh-cCCCCCCCCCC
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQI-KTHPPNRPVYA 260 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~-~g~~p~~~ty~ 260 (260)
.+||.||.+|++.|+.++|.++|++|.+.|+.|+..| |.+++|.++|++|.+ .|+.|+..+|+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 9999999999999999999999999999999998888 889999999999976 49999988885
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=263.48 Aligned_cols=229 Identities=17% Similarity=0.220 Sum_probs=197.5
Q ss_pred HHHHHHcccchhHHHHHhhhhhcchHHHHHHHHhcccCCC-----------------------------------CCCHH
Q 041786 21 IANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSL-----------------------------------SVFPQ 65 (260)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-----------------------------------~~~~~ 65 (260)
+.+|..++..+.+.+...+.+.+...+|+++|++|.+.|+ .||..
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 3344445666667777777777766677777777755544 55566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-------------HHHHhCCCCCCHhhHHHHHHHHh
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------VRMIRKGFVPDKRTHTILVNAWC 132 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------------~~m~~~g~~p~~~~~~~li~~~~ 132 (260)
+||+||++|++.|++++|.++|++|.+ +|..+||++|.++ ++|.+.|+.||..||+++|.+|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 678889999999999999999999974 7899999999666 78999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC------
Q 041786 133 SSGKMREAQEFLQELSDKGFNPPV----------------RSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------ 190 (260)
Q Consensus 133 ~~g~~~~a~~~~~~m~~~~~~~~~----------------~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~------ 190 (260)
+.|++++|.+++.+|.+.|+.|+. ..|.++|+.|. .||..+||+||.+|++.|+
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999988775 39999999985 4899999999999999998
Q ss_pred -------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHH-CCCCcCCCc-----------ccHHHHHHHHHHHHhcC
Q 041786 191 -------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE-DGHKLFPSL-----------GQFDDAFCFFSEMQIKT 251 (260)
Q Consensus 191 -------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~-----------g~~~~a~~~~~~m~~~g 251 (260)
.|+.||..||+.+|.+|++.|.+++|.++|++|.+ .|+.|+..+ |++++|.+++++| +
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 89999999999999999999999999999999986 699999877 9999999999876 6
Q ss_pred CCCCCCCCC
Q 041786 252 HPPNRPVYA 260 (260)
Q Consensus 252 ~~p~~~ty~ 260 (260)
+.||..+|+
T Consensus 490 ~~p~~~~~~ 498 (697)
T PLN03081 490 FKPTVNMWA 498 (697)
T ss_pred CCCCHHHHH
Confidence 899988774
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-34 Score=264.91 Aligned_cols=240 Identities=16% Similarity=0.105 Sum_probs=160.1
Q ss_pred HHHHHHHcccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcH
Q 041786 20 HIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV 99 (260)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 99 (260)
-+.+|.+++..+.++++..+.+.+...+|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 34444455666667777777777777777777777777777777777777777777777777777777777666666666
Q ss_pred HHHHHHHHHH---------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-------------
Q 041786 100 LLYNSLHVCF---------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR------------- 157 (260)
Q Consensus 100 ~~~~~li~~~---------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------- 157 (260)
.+||+|+.++ .++.+.-..||..+||++|.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 6666666444 112222223344444444444444444444444444444444433321
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Q 041786 158 ---------------------------------------------------------------------SAKQMVNKMIK 168 (260)
Q Consensus 158 ---------------------------------------------------------------------~a~~l~~~m~~ 168 (260)
+|..+|++|.+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555543
Q ss_pred CCCCCChhchHHHHHHHHhcCC-------------------------------------------CCCCcchHHHHHHHH
Q 041786 169 QGSVPDLETFNSLIETICKSGE-------------------------------------------LGLCADVNTNKISIP 205 (260)
Q Consensus 169 ~g~~p~~~~~~~li~~~~~~~~-------------------------------------------~~~~~~~~t~~~li~ 205 (260)
++.||..||+++|.+|++.|+ ....||+.+||.+|.
T Consensus 484 -~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~ 562 (857)
T PLN03077 484 -TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLT 562 (857)
T ss_pred -CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHH
Confidence 355666666555555554443 123778899999999
Q ss_pred hhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHH-hcCCCCCCCCCC
Q 041786 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQ-IKTHPPNRPVYA 260 (260)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~-~~g~~p~~~ty~ 260 (260)
+|++.|+.++|.++|++|.+.|+.|+..| |.+++|.++|++|. ..|+.||..||+
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999988 99999999999999 569999988874
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-34 Score=261.80 Aligned_cols=229 Identities=15% Similarity=0.195 Sum_probs=181.8
Q ss_pred ccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH
Q 041786 28 DIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107 (260)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 107 (260)
+....+.+...+.+++....|+++|++|.+ ||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 345567888888888888899999999964 6888999999999999999999999999999999999999999985
Q ss_pred HH-------------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC------------CCHHHHHHH
Q 041786 108 CF-------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN------------PPVRSAKQM 162 (260)
Q Consensus 108 ~~-------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------~~~~~a~~l 162 (260)
+. ..|.+.|+.||..+||+||.+|+++|+++.|.++|++|...+.. ....+|.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 43 56777888888888888888888888888888888888765442 233388888
Q ss_pred HHHHHHCCCCCChhchHHHHHHHHhcCC-------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCC
Q 041786 163 VNKMIKQGSVPDLETFNSLIETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229 (260)
Q Consensus 163 ~~~m~~~g~~p~~~~~~~li~~~~~~~~-------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 229 (260)
|.+|.+.|+.||..||+++|.+|++.|+ .|+.||..+||.||.+|++.|++++|.++|++|...++.
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 8888888888888888888888888877 677778888888888888888888888888777654444
Q ss_pred cCCCc-------ccHHHHHHHHHHHHhcCCCCCCCCCC
Q 041786 230 LFPSL-------GQFDDAFCFFSEMQIKTHPPNRPVYA 260 (260)
Q Consensus 230 p~~~~-------g~~~~a~~~~~~m~~~g~~p~~~ty~ 260 (260)
.++.+ |++++|+++|++|...|+.||..||+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 44333 77777777777777777777777763
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=1.3e-14 Score=85.26 Aligned_cols=50 Identities=38% Similarity=0.740 Sum_probs=46.4
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHh
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 187 (260)
||..+||++|++|++.|++++|.++|++|.+ .|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-------------------~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-------------------RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-------------------cCCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999884 5689999999999999975
No 8
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=5.1e-12 Score=102.78 Aligned_cols=113 Identities=21% Similarity=0.352 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHH--H-------HHHHhCCCCCCHhhHHHHHHHHhc
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC--F-------VRMIRKGFVPDKRTHTILVNAWCS 133 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~-------~~m~~~g~~p~~~~~~~li~~~~~ 133 (260)
+..+|.+||.+.|+....+.|.+++++-.....+.+..+||.+|.+ | .+|....++||..|||+++...++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 5679999999999999999999999999998889999999999933 3 789999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 134 SGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
.|+++.|..- +.+++.+|++-|+.|...+|..+|.-+++-++
T Consensus 286 fg~F~~ar~a---------------alqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 286 FGKFEDARKA---------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred hcchHHHHHH---------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 9998876432 33344444445555555555555555554444
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=1.2e-13 Score=81.05 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
||+.+||+||++|++.|++++|.++|++|.+.|++||..||+++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 899999999999999999999999999988765544444444433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.44 E-value=3.7e-11 Score=101.64 Aligned_cols=241 Identities=12% Similarity=0.029 Sum_probs=167.7
Q ss_pred hhhhhHHHHHHHHcccc---hhHHHHHhhhhhcchHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 041786 14 YFAAVNHIANIVRHDIY---AERTLNRLNLTLISELSMWKTIELMKPDSLSVF---PQTLSLIIEEFGKHGLIDNAVEVF 87 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~ 87 (260)
+..++..+.++++.+.. ....+-.++...+...+|.++++.+.+.+..++ ...+..+...|.+.|++++|..+|
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 130 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELF 130 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33455555555555432 234455556666677789999988876542222 356788888999999999999999
Q ss_pred HHhhhcCCCCcHHHHHHHHHHH-------------HHHHhCCCCCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 88 NKCTAFNCQQCVLLYNSLHVCF-------------VRMIRKGFVPD----KRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 88 ~~m~~~~~~~~~~~~~~li~~~-------------~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+++.+.. +.+..+++.+..++ +.+.+.+..+. ...|..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 131 LQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 9988652 23456666666443 33444332222 123456677788899999999999988764
Q ss_pred CC---------------CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCcchHHHHHHH
Q 041786 151 GF---------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCADVNTNKISI 204 (260)
Q Consensus 151 ~~---------------~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~~~t~~~li 204 (260)
.- ..+..+|.++|..+.+.+......+++.+..+|.+.|+ ....|+...+..+.
T Consensus 210 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la 289 (389)
T PRK11788 210 DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALA 289 (389)
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 31 11222888888888765433335678889999999998 34467777778899
Q ss_pred HhhhhhccHHHHHHHHHHHHHCCCCcCCCc--------------ccHHHHHHHHHHHHhcCCCCCCC
Q 041786 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--------------GQFDDAFCFFSEMQIKTHPPNRP 257 (260)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~ 257 (260)
..+.+.|++++|..+|+++.+. .|+... |+.++++.+|++|.+++++|++.
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999988765 354433 47889999999999998888864
No 11
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=3.6e-12 Score=111.53 Aligned_cols=206 Identities=18% Similarity=0.160 Sum_probs=150.5
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---HHHHhCCCCCCHhhHHH
Q 041786 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---VRMIRKGFVPDKRTHTI 126 (260)
Q Consensus 50 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~m~~~g~~p~~~~~~~ 126 (260)
.++..+...|+.|+..||..+|..||..|+++.|- +|..|+-.....+...|+.++.++ ..|... -.|...||+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enp-kep~aDtyt~ 88 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENP-KEPLADTYTN 88 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCC-CCCchhHHHH
Confidence 46677888999999999999999999999999999 999999888888899999999765 223322 3789999999
Q ss_pred HHHHHhccCCHHH---HHHHHHHHH----hCCC-----------------CCCHH------HHHHHHHHHHHCC-CCCCh
Q 041786 127 LVNAWCSSGKMRE---AQEFLQELS----DKGF-----------------NPPVR------SAKQMVNKMIKQG-SVPDL 175 (260)
Q Consensus 127 li~~~~~~g~~~~---a~~~~~~m~----~~~~-----------------~~~~~------~a~~l~~~m~~~g-~~p~~ 175 (260)
|+.+|...||+.. .++.+.... ..|+ .|+.. .-..+.+...+-+ ..|..
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999998655 333222221 2232 22222 1111122222221 01211
Q ss_pred h-----------------chHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----
Q 041786 176 E-----------------TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---- 234 (260)
Q Consensus 176 ~-----------------~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---- 234 (260)
. -+-.+++. |+.. .+ .|+..+|..++..-.-+|+++.|..++.+|++.|.....+-
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~-cksl-~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNM-CKSL-VE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHH-HHHh-hc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1 12222222 2222 23 79999999999999999999999999999999999888883
Q ss_pred ----ccHHHHHHHHHHHHhcCCCCCCCCCC
Q 041786 235 ----GQFDDAFCFFSEMQIKTHPPNRPVYA 260 (260)
Q Consensus 235 ----g~~~~a~~~~~~m~~~g~~p~~~ty~ 260 (260)
++..-+..+++-|...|+.|+.+||+
T Consensus 246 l~g~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 246 LLGINAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred hhcCccchHHHHHHHHHHHhcCCCCcchhH
Confidence 88889999999999999999999974
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.7e-09 Score=88.36 Aligned_cols=118 Identities=8% Similarity=0.096 Sum_probs=67.7
Q ss_pred HcccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHH
Q 041786 26 RHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105 (260)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 105 (260)
.+-..+...+++...++.+...|.+++.+-.....+.+..+||.+|.+-+= ....+++.+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 344444555555555666666666666666555556666666666644321 1115566666666666666666666
Q ss_pred HHHH-----------------HHHHhCCCCCCHhhHHHHHHHHhccCCHHH-HHHHHHHH
Q 041786 106 HVCF-----------------VRMIRKGFVPDKRTHTILVNAWCSSGKMRE-AQEFLQEL 147 (260)
Q Consensus 106 i~~~-----------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m 147 (260)
+.|. .+|++-|+.|...+|..+|.-+++.++..+ |..++.++
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 6554 556666666666666666666666655533 33333333
No 13
>PF12854 PPR_1: PPR repeat
Probab=99.21 E-value=1.9e-11 Score=64.99 Aligned_cols=34 Identities=32% Similarity=0.696 Sum_probs=32.2
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 14
>PF12854 PPR_1: PPR repeat
Probab=99.16 E-value=5.8e-11 Score=63.12 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 58 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
+|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999985
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.09 E-value=1.7e-08 Score=85.41 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=148.3
Q ss_pred hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcH----HHHHHHHH
Q 041786 32 ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV----LLYNSLHV 107 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~ 107 (260)
...+...+...+....|.++|+.+.+.. ..+..+++.++..|.+.|++++|.+.|+.+.+.+-.+.. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4555666777778889999999987652 346788999999999999999999999999876533322 12333322
Q ss_pred HH-------------HHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----------------CCHH
Q 041786 108 CF-------------VRMIRKGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----------------PPVR 157 (260)
Q Consensus 108 ~~-------------~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------------~~~~ 157 (260)
.+ +++.+. .|+ ...+..+...|.+.|++++|.++|+++...+-. .+..
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 22 333332 343 557777889999999999999999998764321 2233
Q ss_pred HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCcchHHHHHHHHhhhh---hccHHHHHHHHHHH
Q 041786 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCADVNTNKISIPAVSK---EFMIDEAFRLLCNL 223 (260)
Q Consensus 158 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~~~t~~~li~~~~~---~g~~~~a~~~~~~m 223 (260)
+|...++.+.+. .|+...+..+...+.+.|+ ....|+..+++.++..+.. .|+.+++..+|++|
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 788888888776 4677777889999999998 4557999999999988775 56999999999999
Q ss_pred HHCCCCcCCCc
Q 041786 224 VEDGHKLFPSL 234 (260)
Q Consensus 224 ~~~~~~p~~~~ 234 (260)
.+.++.|++.-
T Consensus 345 ~~~~~~~~p~~ 355 (389)
T PRK11788 345 VGEQLKRKPRY 355 (389)
T ss_pred HHHHHhCCCCE
Confidence 99888887754
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.00 E-value=2.9e-07 Score=85.52 Aligned_cols=204 Identities=11% Similarity=0.018 Sum_probs=114.5
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---------
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--------- 109 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--------- 109 (260)
+...+...+|.+.++.+.+.. +.+...|..+...+.+.|++++|.++++.+.+.+ +.+...+..+..++
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 333444445555555554332 1234555556666666666666666666655543 22333333333222
Q ss_pred ----HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------------CCCHHHHHHHHHHHHHCC
Q 041786 110 ----VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------NPPVRSAKQMVNKMIKQG 170 (260)
Q Consensus 110 ----~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------~~~~~~a~~l~~~m~~~g 170 (260)
+.+.+ ..|+..++..+..++.+.|+.++|.+.++.+.+... ..+..+|..+|+.+.+..
T Consensus 723 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 723 IQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 22222 234445566666677777777777777766654321 122236777777776654
Q ss_pred CCCChhchHHHHHHHHhcCC----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----
Q 041786 171 SVPDLETFNSLIETICKSGE----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----- 234 (260)
Q Consensus 171 ~~p~~~~~~~li~~~~~~~~----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----- 234 (260)
+.+...++.+...+.+.|+ ....| +..++..+...+...|++++|..+|+++.+.+.. ++.+
T Consensus 801 -p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 878 (899)
T TIGR02917 801 -PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLA 878 (899)
T ss_pred -CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHH
Confidence 3456667777777776665 12222 3445556666777778888888888877775532 2222
Q ss_pred ------ccHHHHHHHHHHHH
Q 041786 235 ------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 235 ------g~~~~a~~~~~~m~ 248 (260)
|+.++|..++++|+
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 78888888887775
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.97 E-value=4.8e-07 Score=84.07 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=14.7
Q ss_pred cchHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 195 ~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
|+..++..+...+.+.|+.++|...++.+.+
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334444444445555555555555544443
No 18
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.66 E-value=5.3e-08 Score=52.03 Aligned_cols=34 Identities=29% Similarity=0.686 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP 155 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 155 (260)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999998887776
No 19
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.64 E-value=5.1e-08 Score=51.83 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=31.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 154 (260)
.+||++|.+|++.|+++.|.++|++|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999888766
No 20
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.63 E-value=5.6e-08 Score=51.94 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCC
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 232 (260)
.+||++|.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
No 21
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.63 E-value=5.6e-08 Score=51.67 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCc
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 230 (260)
+.||+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 22
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.50 E-value=1.8e-07 Score=48.49 Aligned_cols=31 Identities=29% Similarity=0.647 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGF 152 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 152 (260)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998764
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.46 E-value=0.00021 Score=64.72 Aligned_cols=212 Identities=11% Similarity=0.034 Sum_probs=135.3
Q ss_pred hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--
Q 041786 32 ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-- 109 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-- 109 (260)
...+-..+...+....|.+.++...+.. +.+...+..+...+.+.|+.++|...++.+....-.+.. .+..+....
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~~l~~~ 190 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCLSFLNK 190 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHc
Confidence 3444445556666668888888876542 224667778888888889999998888877654322222 222221111
Q ss_pred ----------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH---------------------H
Q 041786 110 ----------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR---------------------S 158 (260)
Q Consensus 110 ----------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------------~ 158 (260)
+.+.+....++...+..+..++.+.|++++|.+.|++..... |+.. .
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 233332222334445556677888899999999888876543 2211 2
Q ss_pred HHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 159 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
|...|+...+.. +.+...+..+...+.+.|+ ....|+ ...+..+-..|.+.|++++|...|+++...
T Consensus 269 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 269 AAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 677777766543 2245677788888888887 333444 445666778888899999999999888765
Q ss_pred CCCcCCCc------------ccHHHHHHHHHHHHhc
Q 041786 227 GHKLFPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 227 ~~~p~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
+ |+... |+.++|...|++..+.
T Consensus 348 ~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 K--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred C--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 33211 8889999888887654
No 24
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.38 E-value=3.9e-07 Score=47.18 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCCC
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (260)
+|||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 25
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.26 E-value=1.7e-05 Score=70.79 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=67.7
Q ss_pred HHhCCC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-------------HHHHHHHHHHHCCCCCChhc
Q 041786 112 MIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------------SAKQMVNKMIKQGSVPDLET 177 (260)
Q Consensus 112 m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------~a~~l~~~m~~~g~~p~~~~ 177 (260)
|.+.+. .|++.+|.++++.-.-+|+++.|..++.+|++.|+.-+.. .+..+.+.|...|+.|+..|
T Consensus 194 ~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 194 MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcch
Confidence 334433 4999999999999999999999999999999999855443 88888999999999999999
Q ss_pred hHHHHHHHHhcCC
Q 041786 178 FNSLIETICKSGE 190 (260)
Q Consensus 178 ~~~li~~~~~~~~ 190 (260)
+...+-.+...|.
T Consensus 274 ~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 274 QADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHhhhcchh
Confidence 9988888887655
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.22 E-value=0.00055 Score=52.89 Aligned_cols=170 Identities=10% Similarity=0.003 Sum_probs=106.5
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~ 115 (260)
-..+...+...+|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+..
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------- 95 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------------- 95 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------
Confidence 334444555557777777765442 2245677777888888888888888888766532
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----- 190 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~----- 190 (260)
+.+...+..+...+...|++++|.+.|++....... ......+..+-..+...|+
T Consensus 96 --~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 96 --PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY------------------PQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred --CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------------------ccchHHHHHHHHHHHHcCCHHHHH
Confidence 123445666667777778888888887776642111 1112233334444444444
Q ss_pred ------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHh
Q 041786 191 ------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 191 ------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~ 249 (260)
....| +...+..+...+...|++++|...+++.... .|+... |+.++|..+++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 11122 3456777778888899999999999888775 232211 788888888777654
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.20 E-value=0.00078 Score=61.12 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=142.4
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHH------
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCF------ 109 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~------ 109 (260)
......+....|.+.++.+.... +-+...|..+...+.+.|++++|...|++..+. .|+ ...+..+..++
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~ 160 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKE 160 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCh
Confidence 33444566668999999987653 124567888889999999999999999998865 344 44555554443
Q ss_pred -------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----------------CCHHHHHHHHHHH
Q 041786 110 -------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN----------------PPVRSAKQMVNKM 166 (260)
Q Consensus 110 -------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------------~~~~~a~~l~~~m 166 (260)
+.+... .|+.......+..+.+.|++++|..+++.+.+..-. .+..+|...++..
T Consensus 161 ~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 161 LQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 222222 233322222234578899999999999987665321 2233677777777
Q ss_pred HHCCCCCChhchHHHHHHHHhcCCC---------------CCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCc
Q 041786 167 IKQGSVPDLETFNSLIETICKSGEL---------------GLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230 (260)
Q Consensus 167 ~~~g~~p~~~~~~~li~~~~~~~~~---------------~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 230 (260)
.+.. +.+...+..+-..|...|+. ...| +...+..+...+.+.|++++|...+++.... .|
T Consensus 239 l~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P 315 (656)
T PRK15174 239 LARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HP 315 (656)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 7654 23566777788888888862 2335 3567888889999999999999999998875 35
Q ss_pred CCCc------------ccHHHHHHHHHHHHhc
Q 041786 231 FPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 231 ~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
+... |++++|+..++++...
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5443 9999999999988764
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.16 E-value=6.1e-06 Score=66.72 Aligned_cols=183 Identities=15% Similarity=0.056 Sum_probs=61.8
Q ss_pred hhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH----------
Q 041786 40 LTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------- 109 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---------- 109 (260)
........|.+.++.+...+.. +...+..++.. ...+++++|.++++..-+.. ++...+...+..+
T Consensus 55 ~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 55 WSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHH
Confidence 3344444677777776655432 45556666666 56777777777766554332 2333333333222
Q ss_pred ---HHHHh-CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHH
Q 041786 110 ---VRMIR-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185 (260)
Q Consensus 110 ---~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 185 (260)
+.... .....+...|..+-..+.+.|+.++|++++++..+.. |+ |......++..+
T Consensus 131 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~------------------~~~~~~~l~~~l 190 (280)
T PF13429_consen 131 ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PD------------------DPDARNALAWLL 190 (280)
T ss_dssp HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-------------------HHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC------------------CHHHHHHHHHHH
Confidence 11111 2334567778888888888999999999998877632 22 234444455444
Q ss_pred HhcCC------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHH
Q 041786 186 CKSGE------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAF 241 (260)
Q Consensus 186 ~~~~~------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~ 241 (260)
...|+ .....|...+..+-.+|...|+.++|...|++..... |+... |+.++|.
T Consensus 191 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT---------
T ss_pred HHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 44444 1113455667788888888899999999998877643 32222 8888888
Q ss_pred HHHHHHH
Q 041786 242 CFFSEMQ 248 (260)
Q Consensus 242 ~~~~~m~ 248 (260)
.+.++..
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 8776543
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.96 E-value=0.0032 Score=53.85 Aligned_cols=207 Identities=14% Similarity=0.024 Sum_probs=133.6
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHH-------HHHH
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL-------YNSL 105 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~l 105 (260)
...-++....+....|.+.++.+.+.. +-+...+..+...|.+.|+++.|.+++..+.+.++.++... +..+
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 334556666777779999999998775 23567888999999999999999999999999875443322 2121
Q ss_pred HHH-H--------HHHHhCCC---CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHCCCC
Q 041786 106 HVC-F--------VRMIRKGF---VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-SAKQMVNKMIKQGSV 172 (260)
Q Consensus 106 i~~-~--------~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~a~~l~~~m~~~g~~ 172 (260)
+.- . ..+.+... +.+...+-.+...+...|+.++|.+++++..+.. |+.. ....++....... .
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~-~ 312 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLK-P 312 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcC-C
Confidence 200 0 11122111 1377888899999999999999999999887642 2222 1111222222221 1
Q ss_pred CChhchHHHHHHHHhcCCCCCCcch---HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHH
Q 041786 173 PDLETFNSLIETICKSGELGLCADV---NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFD 238 (260)
Q Consensus 173 p~~~~~~~li~~~~~~~~~~~~~~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~ 238 (260)
.|....-..+....+. .|+. ....++-..+.+.|++++|.+.|+........|+... |+.+
T Consensus 313 ~~~~~~~~~~e~~lk~-----~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN-----VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred CChHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence 2223333333333332 2443 3444666778899999999999995444444565554 9999
Q ss_pred HHHHHHHHHH
Q 041786 239 DAFCFFSEMQ 248 (260)
Q Consensus 239 ~a~~~~~~m~ 248 (260)
+|.+++++-.
T Consensus 388 ~A~~~~~~~l 397 (409)
T TIGR00540 388 EAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.95 E-value=0.0073 Score=51.51 Aligned_cols=198 Identities=9% Similarity=0.005 Sum_probs=126.1
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHH-------HHHHHHHH
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL-------LYNSLHVC 108 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~ 108 (260)
-.++...+....|.+.++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..++.-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 456677778889999999987765 2357788899999999999999999999999887653321 22222211
Q ss_pred H---------HHHHhC---CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChh
Q 041786 109 F---------VRMIRK---GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLE 176 (260)
Q Consensus 109 ~---------~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~ 176 (260)
. ...-+. ..+.+......+..++.+.|+.++|..++++..+.. ++. ....++..+.. .+..
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~-~l~~l~~~l~~----~~~~ 311 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE-RLVLLIPRLKT----NNPE 311 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH-HHHHHHhhccC----CChH
Confidence 0 111111 223467788889999999999999999998877632 222 11122222211 1111
Q ss_pred chHHHHHHHHhcCCCCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHH
Q 041786 177 TFNSLIETICKSGELGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFF 244 (260)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~ 244 (260)
.--..+..+.+. .|+ ...+.++-..+.+.|++++|.+.|+...+.. |+... |+.++|..++
T Consensus 312 ~al~~~e~~lk~-----~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 312 QLEKVLRQQIKQ-----HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred HHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112222222222 243 4456677777888888888888888877653 44443 8888888888
Q ss_pred HHHH
Q 041786 245 SEMQ 248 (260)
Q Consensus 245 ~~m~ 248 (260)
++-.
T Consensus 385 ~~~l 388 (398)
T PRK10747 385 RDGL 388 (398)
T ss_pred HHHH
Confidence 7553
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.94 E-value=0.0036 Score=56.57 Aligned_cols=198 Identities=13% Similarity=-0.004 Sum_probs=128.5
Q ss_pred hHHHHHHHHhcccCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHH------------
Q 041786 45 ELSMWKTIELMKPDS-LSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCF------------ 109 (260)
Q Consensus 45 ~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~------------ 109 (260)
..+|.+.|+...+.+ ..| ....|+.+-..+...|++++|+..|++..+.. |+ ...|..+-.++
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 347888888876654 234 35678888888899999999999999988653 44 33444443333
Q ss_pred -HHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------------CCCHHHHHHHHHHHHHCCCC
Q 041786 110 -VRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------NPPVRSAKQMVNKMIKQGSV 172 (260)
Q Consensus 110 -~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------~~~~~~a~~l~~~m~~~g~~ 172 (260)
++..+ ..| +...|..+-..|...|++++|+..|++..+..- ..+...|...|+...+.. +
T Consensus 388 ~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P 464 (615)
T TIGR00990 388 FDKALK--LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-P 464 (615)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 22222 234 467888888889999999999999998776431 122337777777766542 2
Q ss_pred CChhchHHHHHHHHhcCC-----------CCCCcch--------HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCC
Q 041786 173 PDLETFNSLIETICKSGE-----------LGLCADV--------NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS 233 (260)
Q Consensus 173 p~~~~~~~li~~~~~~~~-----------~~~~~~~--------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 233 (260)
-+...|+.+-..+...|+ ....|+. ..++.....+...|++++|..++++.... .|+..
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~ 542 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECD 542 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 346677777778888887 2222221 11222222334468888888888876654 35554
Q ss_pred c------------ccHHHHHHHHHHHHh
Q 041786 234 L------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 234 ~------------g~~~~a~~~~~~m~~ 249 (260)
. |++++|+..|++...
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4 888888888887654
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.94 E-value=0.0055 Score=59.42 Aligned_cols=216 Identities=13% Similarity=0.054 Sum_probs=128.9
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHH----
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCF---- 109 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~---- 109 (260)
-..+...+...+|.+.+++..+.. | +...+..+...|.+.|++++|...|++..+.. |+ ...+..+....
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCC
Confidence 334445566668888887776543 3 45666777788888888888888888876532 22 22221111110
Q ss_pred ------HHHHh---CCCCCC---------HhhHHHHHHHHhccCCHHHHHHHHHHHHhCC-----------CCCCHHHHH
Q 041786 110 ------VRMIR---KGFVPD---------KRTHTILVNAWCSSGKMREAQEFLQELSDKG-----------FNPPVRSAK 160 (260)
Q Consensus 110 ------~~m~~---~g~~p~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~~~~~~a~ 160 (260)
..+.+ ....++ ...+..+...+...|+.++|..+++.-.... ...+..+|.
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 00100 000111 1112234556777777777777766210000 012223677
Q ss_pred HHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCC
Q 041786 161 QMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228 (260)
Q Consensus 161 ~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (260)
..|+...+.. +.+...+..+...|...|+ ....|+ ...+..+-..+...|+.++|..+|+.+....-
T Consensus 624 ~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 624 AAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 7777766653 2357788888999988888 334443 45566677888899999999999999886532
Q ss_pred CcCC----Cc------------ccHHHHHHHHHHHH-hcCCCCCC
Q 041786 229 KLFP----SL------------GQFDDAFCFFSEMQ-IKTHPPNR 256 (260)
Q Consensus 229 ~p~~----~~------------g~~~~a~~~~~~m~-~~g~~p~~ 256 (260)
...+ .. |+.++|+..|++.. ..|+.|+.
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~ 747 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTR 747 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCC
Confidence 2111 01 99999999998765 44776653
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.92 E-value=4.7e-05 Score=61.56 Aligned_cols=191 Identities=18% Similarity=0.147 Sum_probs=73.5
Q ss_pred hhhhcchHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------
Q 041786 39 NLTLISELSMWKTIELMKPDSL-SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------- 109 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------- 109 (260)
....+....|+++++.-..... .-+...|..+-......++.+.|+..++++...+.. +...+..++...
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~~~~~A 96 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 3444555588888865444432 234555666667777889999999999999876532 334444444322
Q ss_pred HHHHhCC--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHh
Q 041786 110 VRMIRKG--FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187 (260)
Q Consensus 110 ~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 187 (260)
..+.+.+ ..++...+..++..+.+.++++++.++++..... ....++...|..+-..+.+
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 97 LKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------------------PAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-------------------T---T-HHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------------------cCCCCCHHHHHHHHHHHHH
Confidence 1122222 2356677778888888999999999988886642 2234577777788888888
Q ss_pred cCC-----------CCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHH
Q 041786 188 SGE-----------LGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFF 244 (260)
Q Consensus 188 ~~~-----------~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~ 244 (260)
.|+ ....|+ ....+.++..+...|+.+++..++....+.. ..++.. |+.++|+..|
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccc
Confidence 887 445664 6778889999999999999999998887764 223333 9999999999
Q ss_pred HHHHh
Q 041786 245 SEMQI 249 (260)
Q Consensus 245 ~~m~~ 249 (260)
++...
T Consensus 238 ~~~~~ 242 (280)
T PF13429_consen 238 EKALK 242 (280)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 98775
No 34
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.91 E-value=0.00019 Score=54.38 Aligned_cols=89 Identities=19% Similarity=0.346 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------------------------
Q 041786 61 SVFPQTLSLIIEEFGKH-----GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------------------- 109 (260)
Q Consensus 61 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------------------------- 109 (260)
..+..+|..+|+.|.+. |.++=....+..|.+.|+..|..+|+.||.++
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45888999999998865 67777788889999999999999999999776
Q ss_pred ---HHHHhCCCCCCHhhHHHHHHHHhccCC-HHHHHHHHHHHHh
Q 041786 110 ---VRMIRKGFVPDKRTHTILVNAWCSSGK-MREAQEFLQELSD 149 (260)
Q Consensus 110 ---~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 149 (260)
++|...|+.||..++..|++.|.+.+. +.+..++.-.|.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 889999999999999999999988775 4456666666654
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.90 E-value=0.0021 Score=57.99 Aligned_cols=211 Identities=14% Similarity=0.023 Sum_probs=123.7
Q ss_pred cchhhhhHHHHHHHHcc---c---chhHHHHHhhhhhcchHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 041786 12 EDYFAAVNHIANIVRHD---I---YAERTLNRLNLTLISELSMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAV 84 (260)
Q Consensus 12 ~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~ 84 (260)
+.|-.++.-+...+..+ . .....+..++...+...+|...++...+. .|+ ...|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555432 1 11233333444556666888888776554 344 557777788888888888888
Q ss_pred HHHHHhhhcCCCCcHHHHHHHHHHH-------------HHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 85 EVFNKCTAFNCQQCVLLYNSLHVCF-------------VRMIRKGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 85 ~~~~~m~~~~~~~~~~~~~~li~~~-------------~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
..|++..+.. +.+..+|..+-.++ ++.. .+.|+ ...+..+-..+.+.|++++|+..|++..+.
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal--~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI--DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888876653 12344555444333 1111 23343 455666777788888888888888876653
Q ss_pred CC---------------CCCHHHHHHHHHHHHHCCCCCChhc------hHHHHHHHHhcCC-----------CCCCcc-h
Q 041786 151 GF---------------NPPVRSAKQMVNKMIKQGSVPDLET------FNSLIETICKSGE-----------LGLCAD-V 197 (260)
Q Consensus 151 ~~---------------~~~~~~a~~l~~~m~~~g~~p~~~~------~~~li~~~~~~~~-----------~~~~~~-~ 197 (260)
.- ..+..+|...|+...+..-..+... ++.....+...|+ ....|+ .
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 21 1122267777776554421111111 1111122222344 233454 4
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
..+..+...+.+.|++++|...|++..+..
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 468889999999999999999999987653
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.85 E-value=0.024 Score=52.57 Aligned_cols=134 Identities=7% Similarity=-0.016 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHcccch---hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 15 FAAVNHIANIVRHDIYA---ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
..+++.+...++.+... -..+..++...+...+|+..++..... -..+......+...|...|++++|+++|+++.
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555554432 124455555666777788777776621 11122233333557777788888888888887
Q ss_pred hcCCCCcHHHHHHHHHHH----------HHHHh-CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 92 AFNCQQCVLLYNSLHVCF----------VRMIR-KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 92 ~~~~~~~~~~~~~li~~~----------~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+..-. +...+..+...+ +...+ ....|+...+-.++..+...++..+|++.++++.+.
T Consensus 130 ~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 130 KKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred hhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 65411 233343433322 11111 134555555533333333344554577777777654
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.0013 Score=57.42 Aligned_cols=195 Identities=12% Similarity=0.047 Sum_probs=131.2
Q ss_pred HHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhhcC-C-CCcHHHHHHHHHHH-HHH----HhC---
Q 041786 47 SMWKTIELMKPDSLSVFP-QTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-C-QQCVLLYNSLHVCF-VRM----IRK--- 115 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~li~~~-~~m----~~~--- 115 (260)
+|..+|..+.+. .+|+ .+...+=.+|...+++++|..+|+.+++.. . .-+..+|++.+... +.+ +.+
T Consensus 337 ~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 337 EALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888888885443 2333 555667789999999999999999998753 1 12567888888433 111 111
Q ss_pred CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--------C-------CHHHHHHHHHHHHHCCCCCChhchH
Q 041786 116 GFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN--------P-------PVRSAKQMVNKMIKQGSVPDLETFN 179 (260)
Q Consensus 116 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--------~-------~~~~a~~l~~~m~~~g~~p~~~~~~ 179 (260)
...| ...+|-++=+.|.-.++.+.|+..|++..+.+-. + +.++|..-|+. .+..|+..|+
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~----Al~~~~rhYn 490 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK----ALGVDPRHYN 490 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh----hhcCCchhhH
Confidence 1233 4579999999999999999999999988764320 0 11144444433 3556777776
Q ss_pred HH---HHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------
Q 041786 180 SL---IETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------- 234 (260)
Q Consensus 180 ~l---i~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---------- 234 (260)
+. --.|.+.+. ..+-| +.+.-..+...+-+.|+.|+|.++|++..... |....
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASILF 568 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHH
Confidence 54 445566665 34444 45556666677888899999999998876543 22222
Q ss_pred --ccHHHHHHHHHHHHh
Q 041786 235 --GQFDDAFCFFSEMQI 249 (260)
Q Consensus 235 --g~~~~a~~~~~~m~~ 249 (260)
++.++|+..++++++
T Consensus 569 ~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE 585 (638)
T ss_pred hhcchHHHHHHHHHHHH
Confidence 899999999999874
No 38
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.79 E-value=0.00037 Score=47.13 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 68 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
..-|..+...+++.....+|+.+++ .|+ .|+..+|+.++.+.++...=. ..+-.+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkR----------------------N~i~lPsv~~Yn~VL~Si~~R~lD~--~~ie~k 84 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKR----------------------NGITLPSVELYNKVLKSIAKRELDS--EDIENK 84 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHh----------------------cCCCCCcHHHHHHHHHHHHHccccc--hhHHHH
Confidence 3445555566777777777776664 555 677777777777776643211 112222
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhc
Q 041786 147 LSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188 (260)
Q Consensus 147 m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 188 (260)
|- ..+.++.+|...+++|+..||+.++..+.+.
T Consensus 85 l~---------~LLtvYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 85 LT---------NLLTVYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred HH---------HHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 33 3566777777888999999999999887653
No 39
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.75 E-value=0.00044 Score=46.79 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=53.4
Q ss_pred cchHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCH
Q 041786 43 ISELSMWKTIELMKPDSL-SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK 121 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~ 121 (260)
.....-.-++.-+++.|+ .|++.+|+.++.+.++..--..+ +=++| ..++.||..|...+++|+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~--ie~kl------------~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED--IENKL------------TNLLTVYQDILSNKLKPND 104 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh--HHHHH------------HHHHHHHHHHHHhccCCcH
Confidence 444467778889999999 89999999999998876532211 11111 2245667777777777888
Q ss_pred hhHHHHHHHHhc
Q 041786 122 RTHTILVNAWCS 133 (260)
Q Consensus 122 ~~~~~li~~~~~ 133 (260)
.||+.+|..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 888877777654
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.68 E-value=0.0091 Score=45.94 Aligned_cols=170 Identities=14% Similarity=0.026 Sum_probs=102.5
Q ss_pred hhhhhHHHHHHHHcccc---hhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 041786 14 YFAAVNHIANIVRHDIY---AERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (260)
+-.+...+...+..+.. ....+-..+...+....|.+.++...+.. +.+...+..+...+...|++++|.+.|++.
T Consensus 47 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 47 LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33444445544444322 22334444555666668999998876653 235667888889999999999999999988
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Q 041786 91 TAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170 (260)
Q Consensus 91 ~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g 170 (260)
...... ......+..+-..+.+.|++++|.+.|.+..+.. |
T Consensus 126 ~~~~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---------------- 166 (234)
T TIGR02521 126 IEDPLY---------------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQID--P---------------- 166 (234)
T ss_pred Hhcccc---------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c----------------
Confidence 753211 1123344445566667777777777776655421 1
Q ss_pred CCCChhchHHHHHHHHhcCC------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 171 SVPDLETFNSLIETICKSGE------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 171 ~~p~~~~~~~li~~~~~~~~------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
.+...+..+...+...|+ .....+...+..+...+...|+.+.|..+++.+..
T Consensus 167 --~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 167 --QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 112233333333444443 11123445566677788889999999998887754
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.63 E-value=0.014 Score=49.82 Aligned_cols=203 Identities=11% Similarity=0.093 Sum_probs=127.1
Q ss_pred cchHHHHHHHHhcccCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH----HH--------
Q 041786 43 ISELSMWKTIELMKPDSLSVFPQTLSLI-IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV----CF-------- 109 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~----~~-------- 109 (260)
+....|.+.+..-.+.. ++...+-.+ .....+.|+++.|.+.|.++.+. .|+....-.+.. ..
T Consensus 98 Gd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 44447776666543332 223333333 34447889999999999998764 344433322221 11
Q ss_pred ---HHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHH----------
Q 041786 110 ---VRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSA-------KQMVNKMIK---------- 168 (260)
Q Consensus 110 ---~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a-------~~l~~~m~~---------- 168 (260)
+...+ ..| +......+...|.+.|++++|.+++..+.+.+..++.... ..++....+
T Consensus 174 ~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33333 335 4567788899999999999999999999988766433211 111111111
Q ss_pred -----CCCCCChhchHHHHHHHHhcCC-----------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCC
Q 041786 169 -----QGSVPDLETFNSLIETICKSGE-----------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP 232 (260)
Q Consensus 169 -----~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 232 (260)
...+.++.....+..++...|+ ....|+. --.++.+....++.+++.+..+...+. .|+.
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~ 327 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDT 327 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHhhccCCChHHHHHHHHHHHhh--CCCC
Confidence 0123466677888888999998 3334444 223455556679999999999988865 3444
Q ss_pred Cc------------ccHHHHHHHHHHHHhcCCCCCCC
Q 041786 233 SL------------GQFDDAFCFFSEMQIKTHPPNRP 257 (260)
Q Consensus 233 ~~------------g~~~~a~~~~~~m~~~g~~p~~~ 257 (260)
.. +++++|.+.|+...+. .|+..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~ 362 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAY 362 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 33 9999999999999864 46544
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.018 Score=46.68 Aligned_cols=186 Identities=11% Similarity=-0.014 Sum_probs=100.0
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCC
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g 116 (260)
+++.+.+-..+|.+.|..-.+. .|-+.||-.|-..|.+...+..|+.+|.+-.+
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld------------------------ 284 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD------------------------ 284 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh------------------------
Confidence 3333343333555544443322 24444555555555555555555555554433
Q ss_pred CCCCHhhHH-HHHHHHhccCCHHHHHHHHHHHHhCC---C------------CCCHHHHHHHHHHHHHCCCCCChhchHH
Q 041786 117 FVPDKRTHT-ILVNAWCSSGKMREAQEFLQELSDKG---F------------NPPVRSAKQMVNKMIKQGSVPDLETFNS 180 (260)
Q Consensus 117 ~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~---~------------~~~~~~a~~l~~~m~~~g~~p~~~~~~~ 180 (260)
..|-.+||- -+-+.+-..++.++|.++++...+.. + ....+-|+.+++.+.+.|+. ++..|+.
T Consensus 285 ~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~N 363 (478)
T KOG1129|consen 285 SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCN 363 (478)
T ss_pred cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhh
Confidence 234444442 33445555667777777777665431 1 12233677777777777765 6666666
Q ss_pred HHHHHHhcCC-------------CCCCcc--hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------c
Q 041786 181 LIETICKSGE-------------LGLCAD--VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----------G 235 (260)
Q Consensus 181 li~~~~~~~~-------------~~~~~~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------g 235 (260)
+--.|.-.++ ..-.|+ ...|-.|-...+-.|++..|.+-|+-...++-.--... |
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence 6555555554 111122 23454555556677888888887766554331111111 8
Q ss_pred cHHHHHHHHHHHHh
Q 041786 236 QFDDAFCFFSEMQI 249 (260)
Q Consensus 236 ~~~~a~~~~~~m~~ 249 (260)
++++|..+++....
T Consensus 444 ~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 444 DILGARSLLNAAKS 457 (478)
T ss_pred chHHHHHHHHHhhh
Confidence 88888888876654
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.59 E-value=0.029 Score=53.23 Aligned_cols=72 Identities=10% Similarity=-0.062 Sum_probs=40.1
Q ss_pred hhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----ccH
Q 041786 175 LETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----GQF 237 (260)
Q Consensus 175 ~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----g~~ 237 (260)
...++.+-..+...|+ ....| +...+..+-.++...|++++|...|++..+.. |+..- |..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~ 720 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHH
Confidence 3445555556666666 22334 34556666666777777777777777666432 44332 555
Q ss_pred HHHHHHHHHHH
Q 041786 238 DDAFCFFSEMQ 248 (260)
Q Consensus 238 ~~a~~~~~~m~ 248 (260)
..+..-|+...
T Consensus 721 ~~~~~~~~~a~ 731 (987)
T PRK09782 721 NQQRFNFRRLH 731 (987)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.54 E-value=0.023 Score=52.80 Aligned_cols=177 Identities=8% Similarity=-0.066 Sum_probs=98.8
Q ss_pred hcchHHHHHHHHhcccCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC-CC
Q 041786 42 LISELSMWKTIELMKPDSLS-VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF-VP 119 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~-~p 119 (260)
.+...+|.+.|+.+.+.+-. |+- .-..+...|...|++++|+..|+++.+.. | .. ..
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p------------------~~~~~ 308 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP--E------------------TIADL 308 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC--C------------------CCCCC
Confidence 34445788888887766532 221 22224567777888888888888765421 0 00 01
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCCh---hchHHHHHHHHhcCC------
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL---ETFNSLIETICKSGE------ 190 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~---~~~~~li~~~~~~~~------ 190 (260)
.......+..++...|++++|.++++.+.... |.... ++. ...-.|+. ..+..+...+...|+
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~--P~~~~---~~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNS--PPFLR---LYG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--CceEe---ecC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 12345666778899999999999999887642 10000 000 00001221 122333344444444
Q ss_pred -----CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHh
Q 041786 191 -----LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 191 -----~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~ 249 (260)
....| +...+..+...+...|+.++|...+++.... .|+... |++++|..+++++.+
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11223 3455666667777777777777777766653 355422 777777777777764
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.50 E-value=0.013 Score=50.22 Aligned_cols=208 Identities=11% Similarity=0.030 Sum_probs=125.5
Q ss_pred hcchHHHHHHHHhcccCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHH-----HHHHHH-------H
Q 041786 42 LISELSMWKTIELMKPDSLSVFPQTL-SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL-----YNSLHV-------C 108 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-----~~~li~-------~ 108 (260)
-+....|.+.+....+. .|+...+ -.....+.+.|+.+.|.+.+.+..+.. |+... +..+.. +
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 44555888888776554 3554333 344567778899999999999876543 33321 222110 0
Q ss_pred ---HHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-------HH------------HHHHH
Q 041786 109 ---FVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS-------AK------------QMVNK 165 (260)
Q Consensus 109 ---~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------a~------------~l~~~ 165 (260)
.+.+.+.. | +......+...+...|++++|.+.+..+.+.+..++... .. +.+..
T Consensus 173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 13344433 5 456788899999999999999999999999876543321 11 12222
Q ss_pred HHHCCC---CCChhchHHHHHHHHhcCC-----------CCCCcchHH---HHHHHHhhhhhccHHHHHHHHHHHHHCCC
Q 041786 166 MIKQGS---VPDLETFNSLIETICKSGE-----------LGLCADVNT---NKISIPAVSKEFMIDEAFRLLCNLVEDGH 228 (260)
Q Consensus 166 m~~~g~---~p~~~~~~~li~~~~~~~~-----------~~~~~~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (260)
+.+... +.+...+..+...+...|+ ....||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 222211 1267777788888888887 333444432 122222334457777787777776653
Q ss_pred CcCCC--c------------ccHHHHHHHHHHHHhcCCCCCCC
Q 041786 229 KLFPS--L------------GQFDDAFCFFSEMQIKTHPPNRP 257 (260)
Q Consensus 229 ~p~~~--~------------g~~~~a~~~~~~m~~~g~~p~~~ 257 (260)
.|+.. . |++++|.+.|+........||..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 34444 2 99999999999544444456544
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=97.48 E-value=0.069 Score=47.70 Aligned_cols=78 Identities=14% Similarity=0.024 Sum_probs=39.6
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-HhhHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-KRTHT 125 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-~~~~~ 125 (260)
+|.+.++...+.. +-+...|..+-..+...|++++|...|++..+.+ |+ ...+.
T Consensus 322 ~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------------------------P~~~~a~~ 376 (553)
T PRK12370 322 KAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS------------------------PISADIKY 376 (553)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------------CCCHHHHH
Confidence 4455554443332 1134445555555555566666666665555432 33 33444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.+-..+...|++++|...+++..+
T Consensus 377 ~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 377 YYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555566666666666665544
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.46 E-value=0.054 Score=51.44 Aligned_cols=162 Identities=9% Similarity=-0.072 Sum_probs=109.8
Q ss_pred hhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC
Q 041786 40 LTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP 119 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p 119 (260)
...+...+|...|+.+... .|+...+..+...+.+.|+.++|...|+...+.+ | .
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P---------------------~ 574 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--L---------------------G 574 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C---------------------c
Confidence 3566677999999887544 3455566777788899999999999999887632 1 1
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC---------
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--------- 190 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--------- 190 (260)
+...+..+.....+.|++++|.+.+++..+ ..|+...|..+-..+.+.|+
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---------------------l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLN---------------------IAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 112222223333445777777777776654 24555566666666666666
Q ss_pred --CCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHh
Q 041786 191 --LGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 191 --~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~ 249 (260)
....|+ ...++.+-..+...|+.++|...|++..+. .|+... |++++|+..|++...
T Consensus 634 ~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 634 AALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344454 556677777888899999999999888764 344433 899999998888764
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.43 E-value=0.052 Score=44.97 Aligned_cols=193 Identities=13% Similarity=0.107 Sum_probs=118.6
Q ss_pred cchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcH-------HH
Q 041786 29 IYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV-------LL 101 (260)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~ 101 (260)
..++.+.-++.+.-++...|..-++++.+.+- -++.........|.+.|++.....++..|.+.|+--+. .+
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 34456666667777766788888888776652 36778899999999999999999999999999875543 45
Q ss_pred HHHHHH-HH-----HHH------HhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH---------HHH
Q 041786 102 YNSLHV-CF-----VRM------IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR---------SAK 160 (260)
Q Consensus 102 ~~~li~-~~-----~~m------~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------~a~ 160 (260)
|+.++. +. +.+ .-...+-+...-.+++.-+.++|+.++|.++..+-.+....|... ...
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~ 311 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPE 311 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCch
Confidence 665551 11 000 001223355666778889999999999999999888776555422 111
Q ss_pred HHHHHH----HHCCCCCChhchHHHHHHHHhcCC-----------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 161 QMVNKM----IKQGSVPDLETFNSLIETICKSGE-----------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 161 ~l~~~m----~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
.+...+ ...+-.| ..+.+|=..|.+.+. ....|+..+|+.+-.+|.+.|+..+|.+++++-.
T Consensus 312 ~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 312 PLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 111111 1122222 333334334444443 4455555555555555555555555555555544
No 49
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.41 E-value=0.006 Score=53.36 Aligned_cols=204 Identities=16% Similarity=0.144 Sum_probs=130.0
Q ss_pred hcchHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHH----HHH----------
Q 041786 42 LISELSMWKTIELMKPDSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYN----SLH---------- 106 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~li---------- 106 (260)
-+...+|+.+++.+.+. +| .+..|.-+-.++...|+.+.|.+.|.+..+.+ |+..... .|+
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhH
Confidence 33444788888777655 33 46788888888888888888888887766543 4332221 122
Q ss_pred HHH-------------------------------HHHHh-CCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCC-C
Q 041786 107 VCF-------------------------------VRMIR-KGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKG-F 152 (260)
Q Consensus 107 ~~~-------------------------------~~m~~-~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~ 152 (260)
.|| ....+ -.+.|+ ...|-.|=..|...+.++.|...+.+..... -
T Consensus 205 ~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 205 ACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 122 11111 134444 3455666667777777888888777654321 0
Q ss_pred --------------CCCHHHHHHHHHHHHHCCCCCC-hhchHHHHHHHHhcCC-----------CCCCcc-hHHHHHHHH
Q 041786 153 --------------NPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGE-----------LGLCAD-VNTNKISIP 205 (260)
Q Consensus 153 --------------~~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~~~-----------~~~~~~-~~t~~~li~ 205 (260)
.+..+.|..-+++-.+. .|+ +..|+.|-.++...|+ ....|+ ....+.|-+
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 23344666666665443 566 6789999999999998 334443 456778888
Q ss_pred hhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhcCCCCC
Q 041786 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIKTHPPN 255 (260)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~g~~p~ 255 (260)
.|...|+++.|.++|....+ +.|.-.. |++++|+..+++.. .|.|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~ 420 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPT 420 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCch
Confidence 99999999999999887665 3333222 88899988888766 34443
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.059 Score=45.69 Aligned_cols=201 Identities=12% Similarity=0.025 Sum_probs=128.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-C-CcHHHHHHHHHHHH------HHHh---C
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNC-Q-QCVLLYNSLHVCFV------RMIR---K 115 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~-~~~~~~~~li~~~~------~m~~---~ 115 (260)
++.+-.+.+...|+..+...-+....+.-...+++.|+.+|+++.+..- + -|..+|+.++.... .+.+ +
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~ 324 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN 324 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 5555556666777766665555555666677899999999999997631 1 25678888884330 0111 1
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH---------------HHHHHHHHHHHCCCCCChhchHH
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR---------------SAKQMVNKMIKQGSVPDLETFNS 180 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------------~a~~l~~~m~~~g~~p~~~~~~~ 180 (260)
--+-...|..++-+-|+-.++.++|...|++..+.+-.-... .|.+-++.-.+-. +.|-..|-.
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG 403 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG 403 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh
Confidence 112233456666677777888888988888877654221111 4444444443332 234456666
Q ss_pred HHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------ccHH
Q 041786 181 LIETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----------GQFD 238 (260)
Q Consensus 181 li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------g~~~ 238 (260)
|=.+|.-.+- ..++| |...|.+|-.+|.+.++.++|.+-|......|-.-.... ++.+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 6666666554 55666 678999999999999999999999998887653311111 7777
Q ss_pred HHHHHHHHHH
Q 041786 239 DAFCFFSEMQ 248 (260)
Q Consensus 239 ~a~~~~~~m~ 248 (260)
+|...|+.-.
T Consensus 484 eAa~~yek~v 493 (559)
T KOG1155|consen 484 EAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHH
Confidence 7777766544
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.01 Score=51.93 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=68.5
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC-cHHHHHHHHHHH---------HHHHhCC
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ-CVLLYNSLHVCF---------VRMIRKG 116 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~---------~~m~~~g 116 (260)
.|.++.+.... .+.+|.++=.+|+-.++.+.|++.|+...+.. | ..++|+.+-+=+ ..-.+..
T Consensus 409 Laq~Li~~~~~-----sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 409 LAQDLIDTDPN-----SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHhhCCC-----CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 45555544432 46789999999999999999999999877633 3 455666554211 1223456
Q ss_pred CCCCHhhHHHHH---HHHhccCCHHHHHHHHHHHHh
Q 041786 117 FVPDKRTHTILV---NAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 117 ~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+..|..+||++- -.|.|.++++.|+-.|+...+
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 788999998874 468999999999998887664
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.38 E-value=0.026 Score=54.90 Aligned_cols=175 Identities=17% Similarity=0.090 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHH-------------HHHHhCCCCCC-HhhHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCF-------------VRMIRKGFVPD-KRTHTILVN 129 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~-------------~~m~~~g~~p~-~~~~~~li~ 129 (260)
..+..+...+...|++++|++.|++..+.. |+ ...+..+..++ ++..+ ..|+ ...+-.+..
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~--~~P~~~~~~~a~al 537 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ--QKPNDPEQVYAYGL 537 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHH
Confidence 357778889999999999999999988753 44 33333333333 22222 2332 333333344
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-------------------------CHHHHHHHHHHHHHCCCCCChhchHHHHHH
Q 041786 130 AWCSSGKMREAQEFLQELSDKGFNP-------------------------PVRSAKQMVNKMIKQGSVPDLETFNSLIET 184 (260)
Q Consensus 130 ~~~~~g~~~~a~~~~~~m~~~~~~~-------------------------~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 184 (260)
.+...|+.++|...++.+......+ +..+|..+++ ..+.+...+..+-..
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHH
Confidence 5567788888888877654322211 1223444443 123455566777788
Q ss_pred HHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHH
Q 041786 185 ICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDA 240 (260)
Q Consensus 185 ~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a 240 (260)
+.+.|+ ....| +...+..+...|...|+.++|...++...+. .|+... |+.++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHH
Confidence 888887 23344 5678888999999999999999999987654 333322 999999
Q ss_pred HHHHHHHHhc
Q 041786 241 FCFFSEMQIK 250 (260)
Q Consensus 241 ~~~~~~m~~~ 250 (260)
..++++....
T Consensus 691 ~~~~~~al~~ 700 (1157)
T PRK11447 691 QRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhhh
Confidence 9999998764
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.063 Score=45.53 Aligned_cols=217 Identities=17% Similarity=0.137 Sum_probs=118.6
Q ss_pred chhhhhhccccchhhhhHHHHHHHHcccchhHHH----HHhhhhhc-chH--HHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 041786 2 TTVAAAKTSKEDYFAAVNHIANIVRHDIYAERTL----NRLNLTLI-SEL--SMWKTIELMKPDSLSVFPQTLSLIIEEF 74 (260)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~ 74 (260)
|.++++..+..+|..+...+..+.+.|++-..-+ +.++++.. +.+ .|..++.- -+...+|+.++-.-|
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i-----dKyR~ETCCiIaNYY 340 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI-----DKYRPETCCIIANYY 340 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh-----ccCCccceeeehhHH
Confidence 4456677777777777777777777765432111 11122211 111 22222211 012334555555556
Q ss_pred HhcCChHHHHHHHHHhhhcCC---------------------------------CCcHHHHHHHHHHHHHH---------
Q 041786 75 GKHGLIDNAVEVFNKCTAFNC---------------------------------QQCVLLYNSLHVCFVRM--------- 112 (260)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~---------------------------------~~~~~~~~~li~~~~~m--------- 112 (260)
+-.++.++|...|+...+.+- +.|-..|-.|-.+|+-|
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHH
Confidence 666666666666666554431 12222333332222111
Q ss_pred -H-hCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcC
Q 041786 113 -I-RKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189 (260)
Q Consensus 113 -~-~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~ 189 (260)
+ ...++| |...|.+|=..|.+.+++++|+..|......|-. +...|..|-..|-+.+
T Consensus 421 fqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------------------e~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 421 FQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------------------EGSALVRLAKLYEELK 480 (559)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------------------chHHHHHHHHHHHHHH
Confidence 1 123455 6899999999999999999999999987765422 2233333333333333
Q ss_pred C------------------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhc
Q 041786 190 E------------------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250 (260)
Q Consensus 190 ~------------------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~ 250 (260)
+ ....| .....-.|-..+.+.+++++|...-......+ ...++|..++++....
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~-------~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE-------TECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHh
Confidence 3 11223 22233335566778888888887665554432 4578888888887754
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.06 Score=43.61 Aligned_cols=33 Identities=9% Similarity=0.005 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCc
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 230 (260)
.+-..|..+|...|+.++....+.++.+....+
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 345566666777777777777666666554333
No 55
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0026 Score=53.95 Aligned_cols=94 Identities=15% Similarity=0.264 Sum_probs=71.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCcHHHHHHHH-HHH--------HHH----HhCCCCCCHh
Q 041786 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF--NCQQCVLLYNSLH-VCF--------VRM----IRKGFVPDKR 122 (260)
Q Consensus 58 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li-~~~--------~~m----~~~g~~p~~~ 122 (260)
.+...+......+++.+....+++++..++...+.. ....-..|..+++ .|. -.| ...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 355667788888888888888888888888888765 2223334455666 443 122 3459999999
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 151 (260)
+||.||+.+.+.|++..|.++...|...+
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999877544
No 56
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.32 E-value=0.0019 Score=54.74 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=82.1
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC----
Q 041786 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE---- 190 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~---- 190 (260)
.+...+......+++.+....+++.+..++.+.+... ....--..|.+++|..|...|.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~-----------------~~~~~~~~t~ha~vR~~l~~~~~~~~ 122 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP-----------------NCSYLLPSTHHALVRQCLELGAEDEL 122 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc-----------------ccccccCccHHHHHHHHHhcCCHHHH
Confidence 4455677788888888888888999999888887642 1222334455688888888886
Q ss_pred ---------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc
Q 041786 191 ---------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234 (260)
Q Consensus 191 ---------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 234 (260)
.|+-||..|+|.||..+.+.|++..|.++..+|...+...++.+
T Consensus 123 l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 123 LELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 89999999999999999999999999999999988776655544
No 57
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.27 E-value=0.046 Score=52.22 Aligned_cols=175 Identities=14% Similarity=0.033 Sum_probs=114.8
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
+-..++......++|+...+.. -.-.+|..|...|.+....++|.++|+.|.+. -|
T Consensus 1506 lEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---------------------F~- 1561 (1710)
T KOG1070|consen 1506 LENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---------------------FG- 1561 (1710)
T ss_pred HHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---------------------hc-
Confidence 3334445556666676665431 12345667777777777777777777777652 12
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCCCC-hhchHHHHHHHHhcCCCCCCc
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI-KQGSVPD-LETFNSLIETICKSGELGLCA 195 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~-~~g~~p~-~~~~~~li~~~~~~~~~~~~~ 195 (260)
-...+|......+.+.++-+.|.+++.+..+.--.-...+..+-|.+|. +.|-.+- ...|--++.+| .-
T Consensus 1562 -q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--------PK 1632 (1710)
T KOG1070|consen 1562 -QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--------PK 1632 (1710)
T ss_pred -chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--------cc
Confidence 4567888888999999988999999887665432223445566666664 3343222 23555555553 22
Q ss_pred chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHh
Q 041786 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQI 249 (260)
Q Consensus 196 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~ 249 (260)
-...|+..|+.=.+.|+.+.++.+|++....++.| ++.....+-|-+|..
T Consensus 1633 RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~----kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1633 RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI----KKMKFFFKKWLEYEK 1682 (1710)
T ss_pred chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh----hHhHHHHHHHHHHHH
Confidence 45789999999999999999999999999988765 444455555555543
No 58
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0026 Score=48.39 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=58.4
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcC
Q 041786 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189 (260)
Q Consensus 110 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~ 189 (260)
+.|.+-|+.-|..+|+.||+.+=+.. +- -..+|+.+=. .......-|.+++++|...|+.||..|+..|++.+++.+
T Consensus 76 ~~M~efgv~kDL~~Y~~LLDvFPKg~-fv-p~n~fQ~~F~-hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 76 KKMDEFGVEKDLEVYKALLDVFPKGK-FV-PRNFFQAEFM-HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHcCCcccHHHHHHHHHhCCCCC-cc-cccHHHHHhc-cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 78999999999999999999988733 22 3333333211 123334478999999999999999999999999988777
No 59
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.18 E-value=0.065 Score=47.24 Aligned_cols=216 Identities=14% Similarity=0.125 Sum_probs=120.0
Q ss_pred ccchhhhhHHHHHHHHcccchhHHH---HHhhhhhcchHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 041786 11 KEDYFAAVNHIANIVRHDIYAERTL---NRLNLTLISELSMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEV 86 (260)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~ 86 (260)
..+.|..++++.+.+.-+.-...++ -.++.......+|...+..-. ...|+ ...|.-|-..|-..|.++.|+..
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl--~lrpn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL--NLRPNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH--hcCCcchhhccceEEEEeccccHHHHHHH
Confidence 3455667777777666654333332 222333333334444444322 33454 67777888888889999999999
Q ss_pred HHHhhhcCCCCc-HHHHHHHHHHH---------HHH--HhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 041786 87 FNKCTAFNCQQC-VLLYNSLHVCF---------VRM--IRKGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153 (260)
Q Consensus 87 ~~~m~~~~~~~~-~~~~~~li~~~---------~~m--~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 153 (260)
|++..+. +|+ ...||.|-.+. ..+ .....-|+ ....+.|-..|...|.++.|..+|.....
T Consensus 309 Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---- 382 (966)
T KOG4626|consen 309 YKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---- 382 (966)
T ss_pred HHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh----
Confidence 9887753 343 23444444222 000 01111222 23344555555555555655555554332
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hhchHHHHHHHHhcCC-----------CCCCcch-HHHHHHHHhhhhhccHHHHHHHH
Q 041786 154 PPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGE-----------LGLCADV-NTNKISIPAVSKEFMIDEAFRLL 220 (260)
Q Consensus 154 ~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~~~-----------~~~~~~~-~t~~~li~~~~~~g~~~~a~~~~ 220 (260)
+-|. ...++.|-..|-..|+ ..+.|+. ..|+.+-+.|-..|+++.|...+
T Consensus 383 -----------------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 383 -----------------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred -----------------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 1222 2345666666666666 5566763 46777777788888888888877
Q ss_pred HHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhcCCCCC
Q 041786 221 CNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIKTHPPN 255 (260)
Q Consensus 221 ~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~g~~p~ 255 (260)
.+....+ |.-.- |++.+|+.-+++.. .++||
T Consensus 446 ~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPD 488 (966)
T KOG4626|consen 446 TRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPD 488 (966)
T ss_pred HHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCC
Confidence 6655432 21111 88888888887665 34554
No 60
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.09 E-value=0.014 Score=41.02 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
|..++..+|.++++.|+++....+.+..= |+.++...-..- .-..+...|+..+..+++.+|+..|++..|.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-----~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~ 73 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-----YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALK 73 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-----cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHH
Confidence 46789999999999999999988886533 322211000000 01245678999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
+.+...+ .-++.-+..+|..|+.-.-..-+
T Consensus 74 ~vd~fs~------------------~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 74 LVDFFSR------------------KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHH------------------HcCCCCCHHHHHHHHHHHHHhcC
Confidence 9998776 44566667777777776555443
No 61
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.05 E-value=0.061 Score=47.98 Aligned_cols=159 Identities=17% Similarity=0.117 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
.|.-+|.+|+..|+..+|..+..+-.+ -+||..-|..+-+..-....+++|.++++
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le------------------------k~~d~~lyc~LGDv~~d~s~yEkawElsn 481 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE------------------------KDPDPRLYCLLGDVLHDPSLYEKAWELSN 481 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc------------------------CCCcchhHHHhhhhccChHHHHHHHHHhh
Confidence 455566666666655555555444332 24666666666666666666777777776
Q ss_pred HHHhC-----C----CCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCcc-hHHHHHHH
Q 041786 146 ELSDK-----G----FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCAD-VNTNKISI 204 (260)
Q Consensus 146 ~m~~~-----~----~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~-~~t~~~li 204 (260)
....+ | ..++..++...|+.-.+.. .--..+|-.+=.+..+.++ ....|| ...||.+=
T Consensus 482 ~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 482 YISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred hhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 43222 1 0244445555554433221 1123344333333333333 455675 45799999
Q ss_pred HhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------ccHHHHHHHHHHHHh
Q 041786 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------g~~~~a~~~~~~m~~ 249 (260)
.+|.+.|+-.+|+..+.+..+.+..+|..- |.+++|++.+++|..
T Consensus 561 ~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 561 TAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999999999999998887776654 999999999988764
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.02 E-value=0.21 Score=43.98 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=100.7
Q ss_pred chhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHH-HHHHhc-----CChHHHHHHHHHhhhcCCC-------
Q 041786 30 YAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLII-EEFGKH-----GLIDNAVEVFNKCTAFNCQ------- 96 (260)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~-----~~~~~a~~~~~~m~~~~~~------- 96 (260)
......-.++.+.+...+|..++..+.+++ |+-..|...+ .+..-. ...+....+|+++...--+
T Consensus 39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl 116 (517)
T PF12569_consen 39 AVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence 334555566777788889999999998875 5655555444 444222 2456667777777553200
Q ss_pred -C---cHHHHHHHHHHH-HHHHhCCC----------------------------------------------CCCHhhH-
Q 041786 97 -Q---CVLLYNSLHVCF-VRMIRKGF----------------------------------------------VPDKRTH- 124 (260)
Q Consensus 97 -~---~~~~~~~li~~~-~~m~~~g~----------------------------------------------~p~~~~~- 124 (260)
. +..-|...+..| ..+.+.|+ .|+...|
T Consensus 117 ~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~ 196 (517)
T PF12569_consen 117 PLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWT 196 (517)
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHH
Confidence 0 011122222111 22333333 1222222
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC-hhchHHHHHHHHhcCC-----------C
Q 041786 125 -TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGE-----------L 191 (260)
Q Consensus 125 -~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~~~-----------~ 191 (260)
.-+-..|-+.|+.++|++.+++..+ . .|+ +..|..--..|-+.|+ +
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~-------------------h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIE-------------------H--TPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-------------------c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2223334445555555555554433 2 455 4566666777778887 2
Q ss_pred CCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc
Q 041786 192 GLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234 (260)
Q Consensus 192 ~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 234 (260)
...+ |-..-+-....+.++|++++|..++....+.+..|....
T Consensus 256 ~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 256 ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 3333 444555566777889999999999888887776444433
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.97 E-value=0.13 Score=47.84 Aligned_cols=91 Identities=12% Similarity=0.054 Sum_probs=68.1
Q ss_pred hcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCH
Q 041786 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK 121 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~ 121 (260)
.+...++.+.++.|...|.+....+--.+.++|...+++++|+.+|..+....-. .....++.
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~-----------------~~~~~~~~ 367 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK-----------------TFRNSDDL 367 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc-----------------ccCCCcch
Confidence 3344488888899988887777788899999999999999999999988642100 00112344
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.....|..+|...+++++|.++++.+.+
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4457788888888888888888888876
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.97 E-value=0.12 Score=47.99 Aligned_cols=176 Identities=11% Similarity=-0.017 Sum_probs=117.2
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHH
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSV---FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 111 (260)
+-..+...+...+|++.|+...+..... ....+..|..++.+.|++++|..+++.+.... ++....+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~-------- 348 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYG-------- 348 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecC--------
Confidence 4456666777779999999876542111 23556777788999999999999999988642 11111110
Q ss_pred HHhCCCCCCH---hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhc
Q 041786 112 MIRKGFVPDK---RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188 (260)
Q Consensus 112 m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 188 (260)
...-.|+. ..+..+...+...|++++|+++++++.... +-+...+..+...+...
T Consensus 349 --~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--------------------P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 349 --SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--------------------PGNQGLRIDYASVLQAR 406 (765)
T ss_pred --CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHhc
Confidence 00113442 245567778889999999999999887631 22345666666666666
Q ss_pred CC-----------CCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-ccHHHHHHH
Q 041786 189 GE-----------LGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-GQFDDAFCF 243 (260)
Q Consensus 189 ~~-----------~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-g~~~~a~~~ 243 (260)
|+ ....|+ ...+-.....+.+.|++++|..+++++.+. .|+... .+++.+.++
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~~~ 472 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARARDV 472 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 76 445565 455666667889999999999999999874 354444 444444443
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.89 E-value=0.27 Score=43.10 Aligned_cols=174 Identities=14% Similarity=0.035 Sum_probs=97.2
Q ss_pred hhhhcchHHHHHHHHhcc-------cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-----CC-CCcHHH-HHH
Q 041786 39 NLTLISELSMWKTIELMK-------PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF-----NC-QQCVLL-YNS 104 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~-------~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~~~-~~~ 104 (260)
+....+..+|..+|.++. .....--..+++-|-..|.+.|++++|...++...+. |. .|.+.. ++.
T Consensus 251 y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 333444446666665542 2221122456777778899999999998888775532 11 122221 111
Q ss_pred HH--HHH--------------HHHHhCCCCCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041786 105 LH--VCF--------------VRMIRKGFVPD----KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVN 164 (260)
Q Consensus 105 li--~~~--------------~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~ 164 (260)
+. .+. -.....-..++ ..+++.|=..|-+.|++++|.++|++..... +
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~------------~ 398 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL------------R 398 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH------------H
Confidence 11 111 11122222222 3588899999999999999999998765421 1
Q ss_pred HHHHCCCCCChhchHHHHHHHHhcCC------------------CCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 165 KMIKQGSVPDLETFNSLIETICKSGE------------------LGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 165 ~m~~~g~~p~~~~~~~li~~~~~~~~------------------~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
+.......-....++.|-.+|.+.+. ....|+ ..+|..|...|.+.|+++.|.++.+...
T Consensus 399 ~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 399 ELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 10000000112223333333333332 112244 4689999999999999999999988776
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.88 E-value=0.11 Score=45.45 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC-CCCHh-hHHHHHHHHhccCCHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF-VPDKR-THTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~-~p~~~-~~~~li~~~~~~g~~~~a~ 141 (260)
..+...|...|...|+++.|..+++...+. .-...|. .|... ..+.+-..|...+++++|.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-----------------l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv 261 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-----------------LEKTSGLKHLVVASMLNILALVYRSLGKYDEAV 261 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------------HHHccCccCHHHHHHHHHHHHHHHHhccHHHHH
Confidence 456677899999999999999999987752 0011221 12221 2234556788899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-------------------CCCCcchHH-HH
Q 041786 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------------LGLCADVNT-NK 201 (260)
Q Consensus 142 ~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-------------------~~~~~~~~t-~~ 201 (260)
.+|+++.. ++....-...+--..+++.|-.+|.+.|+ .-..|.+.. ++
T Consensus 262 ~ly~~AL~------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 262 NLYEEALT------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred HHHHHHHH------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 99997653 33333222222234566777777888887 233444443 55
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHHC---CCCcCCCc---------------ccHHHHHHHHHHHHh
Q 041786 202 ISIPAVSKEFMIDEAFRLLCNLVED---GHKLFPSL---------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~---------------g~~~~a~~~~~~m~~ 249 (260)
.+...+...+++++|..++....+. -..++... |++++|.++++....
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6677788999999999988765432 23334412 999999999987764
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.18 Score=40.91 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=98.7
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---------------HH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------------VR 111 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---------------~~ 111 (260)
.|.++|-+|.+.. +-+..+--+|=+.|-+.|+++.|+++-+.+.++ ||...--.++..+ +.
T Consensus 53 KAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 53 KAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred hHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 8999999987641 112334456778899999999999999988863 3322211111110 11
Q ss_pred HHhCCCC---CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC-CChhc-hHHHHHHHH
Q 041786 112 MIRKGFV---PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-PDLET-FNSLIETIC 186 (260)
Q Consensus 112 m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~-p~~~~-~~~li~~~~ 186 (260)
+...-+. .-....--|+..|-...++++|+++-+++.+.+-.+...+.-..+.++...-.. -|..- -..+-.+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA-- 206 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA-- 206 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--
Confidence 1111111 011122234445555555555555555554444333333333333333221110 01110 1111111
Q ss_pred hcCCCCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHhc
Q 041786 187 KSGELGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 187 ~~~~~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~~ 250 (260)
....|+ +..-..+-..+...|++..|.+.++...+.+..--+.+ |+.++...++..+.+.
T Consensus 207 ----lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 ----LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred ----HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 111222 22223344667889999999999998887653222222 8888888888877655
No 68
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.78 E-value=0.22 Score=40.54 Aligned_cols=193 Identities=13% Similarity=0.029 Sum_probs=92.8
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH-HH------HHHHh-CCCCCCH
Q 041786 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-CF------VRMIR-KGFVPDK 121 (260)
Q Consensus 50 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~------~~m~~-~g~~p~~ 121 (260)
.++.++.+.. .|.......+...+....+-+.++.-+++.......++..++..+.. .+ +.-.+ ..-.-+.
T Consensus 53 ~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~l 131 (290)
T PF04733_consen 53 SVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSL 131 (290)
T ss_dssp HHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCH
T ss_pred HHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcc
Confidence 4555664444 56666655554444333444555555544433332222223322221 11 21111 1111455
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-------------------HHHHHHHHHHHCCCCCChhchHHHH
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------------------SAKQMVNKMIKQGSVPDLETFNSLI 182 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------------------~a~~l~~~m~~~g~~p~~~~~~~li 182 (260)
......+..|.+.+++|.|...++.|.+.+ .|.. .|..+|+++.+. ..+++.+.+.+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 666778899999999999999999998653 2211 666666665433 345555555555
Q ss_pred HHHHhcCC------------CCCCcchHHHHHHHHhhhhhccH-HHHHHHHHHHHHCCCCcC-CCcccHHHHHHHHHHHH
Q 041786 183 ETICKSGE------------LGLCADVNTNKISIPAVSKEFMI-DEAFRLLCNLVEDGHKLF-PSLGQFDDAFCFFSEMQ 248 (260)
Q Consensus 183 ~~~~~~~~------------~~~~~~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~-~~~g~~~~a~~~~~~m~ 248 (260)
.++...|+ ..-.-+..+...+|......|+. +.+.+.+.+++.. .|+ +.+.+..+....|++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~~~~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHPLVKDLAEKEAEFDRAV 286 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHH
Confidence 55555555 11122344444455555555555 4455555555542 121 11244444455554443
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=96.73 E-value=0.15 Score=45.50 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHcccchh---HHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 15 FAAVNHIANIVRHDIYAE---RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
..+...+.+.+..+.... ..+-.++...+...+|...|+...+.+ +.+...|..+-..+...|++++|...++...
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555555544332 223334445566668999999887664 2246678888899999999999999999988
Q ss_pred hcC
Q 041786 92 AFN 94 (260)
Q Consensus 92 ~~~ 94 (260)
+.+
T Consensus 400 ~l~ 402 (553)
T PRK12370 400 KLD 402 (553)
T ss_pred hcC
Confidence 753
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.69 E-value=0.29 Score=40.79 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=115.0
Q ss_pred HHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHH---------HHHHhC
Q 041786 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCF---------VRMIRK 115 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~---------~~m~~~ 115 (260)
.+.+.++. ..+..|+ ...+..+-..+...|++++|...+++..+.. |+ ...+..+-.++ ....+.
T Consensus 98 ~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 98 HVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred hHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45555544 2222343 3344455677888999999999999988754 33 33333333333 112222
Q ss_pred CC-----CCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHH---HHHHHHHHHHHCCCCCChhchHHHHHH
Q 041786 116 GF-----VPDK--RTHTILVNAWCSSGKMREAQEFLQELSDKGF-NPPVR---SAKQMVNKMIKQGSVPDLETFNSLIET 184 (260)
Q Consensus 116 g~-----~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~---~a~~l~~~m~~~g~~p~~~~~~~li~~ 184 (260)
.+ .|+. ..|..+-..+...|+.++|.+++++...... .+... .+..++..+...|...-..-|..+...
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~ 253 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADY 253 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 11 1232 3455677889999999999999998754322 22222 122455555666655555566555544
Q ss_pred HHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCc----C--CCc-------------ccHHHHHHHHH
Q 041786 185 ICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL----F--PSL-------------GQFDDAFCFFS 245 (260)
Q Consensus 185 ~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~--~~~-------------g~~~~a~~~~~ 245 (260)
....... ............++...|+.+.|..+++.+......+ . ..+ |+.++|...+.
T Consensus 254 ~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 254 AAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3222111 1112222356677889999999999999987643321 0 011 99999999988
Q ss_pred HHHhc
Q 041786 246 EMQIK 250 (260)
Q Consensus 246 ~m~~~ 250 (260)
+-...
T Consensus 332 ~al~~ 336 (355)
T cd05804 332 PVRDD 336 (355)
T ss_pred HHHHH
Confidence 76643
No 71
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.62 E-value=0.1 Score=37.56 Aligned_cols=96 Identities=13% Similarity=-0.067 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
.+..+-..+.+.|++++|...|+...... ..+...|..+-..+.+.|++++|...|+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-----------------------PWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35556677788899999998888876522 1356677777888888899999998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 146 ~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
.....+ | .+...+..+-.++...|+.++|...|+...+
T Consensus 83 ~Al~l~---------------------p---------------------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 83 HALMLD---------------------A---------------------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHhcC---------------------C---------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777531 1 1344555555667777888888888888766
Q ss_pred C
Q 041786 226 D 226 (260)
Q Consensus 226 ~ 226 (260)
.
T Consensus 121 ~ 121 (144)
T PRK15359 121 M 121 (144)
T ss_pred h
Confidence 4
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.51 E-value=0.12 Score=36.48 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=65.1
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
+...+...+...+|.+.|+.....+ +.+...|..+-..+.+.|++++|...|+...+.+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------------- 81 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-------------------- 81 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------
Confidence 3344445556667888887775543 2356777778888888888888888888765421
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+.+...+..+-..|...|+.++|...|+...+.
T Consensus 82 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 ---PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234566666777888999999999999887764
No 73
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.50 E-value=0.061 Score=45.53 Aligned_cols=107 Identities=13% Similarity=0.032 Sum_probs=61.2
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-------
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF------- 109 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~------- 109 (260)
++.........|.++|+++.+.. |+ ....|+..+...++-.+|.+++++..+.. +.+......-...+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 33333334446677777766553 33 33345666666666667777766666432 11211111111111
Q ss_pred ---HHHHh-CCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 110 ---VRMIR-KGFVPDK-RTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 110 ---~~m~~-~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
.-.++ -.+.|+. .+|..|..+|.+.|+++.|+-.++.+-
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 00111 1356765 599999999999999999999988765
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.46 E-value=0.38 Score=39.29 Aligned_cols=54 Identities=11% Similarity=0.017 Sum_probs=38.5
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
+...+....|...|+...+.. +.+...|+.+-..|.+.|++++|...|+...+.
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455557777777765543 124678888888888888888888888887753
No 75
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.43 E-value=0.36 Score=41.33 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=82.6
Q ss_pred HHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-HhhH
Q 041786 47 SMWKTIELMKPDSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-KRTH 124 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-~~~~ 124 (260)
.|++.++.+.+. .| |..-+....+.+.+.++..+|.+.++.+.. ..|+ ...+
T Consensus 324 ~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~------------------------l~P~~~~l~ 377 (484)
T COG4783 324 EALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA------------------------LDPNSPLLQ 377 (484)
T ss_pred hHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------------cCCCccHHH
Confidence 556666665443 23 334444445666666666666666666554 3455 3445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHH
Q 041786 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISI 204 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li 204 (260)
-.+-.+|.+.|++.+|+.++++.... .+-|+..|..|-.+|...|+. ...--.--
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~--------------------~p~dp~~w~~LAqay~~~g~~-----~~a~~A~A 432 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFN--------------------DPEDPNGWDLLAQAYAELGNR-----AEALLARA 432 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc--------------------CCCCchHHHHHHHHHHHhCch-----HHHHHHHH
Confidence 55667788888888888877766543 244778888888888888842 22233445
Q ss_pred HhhhhhccHHHHHHHHHHHHHC
Q 041786 205 PAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
++|...|+++.|...+...++.
T Consensus 433 E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh
Confidence 6777888888888887776654
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.41 E-value=0.21 Score=35.92 Aligned_cols=91 Identities=5% Similarity=-0.125 Sum_probs=72.5
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
.-......+...+|.+.|+...... +.+...|..+-..+.+.|++++|...|+.....+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-------------------- 88 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-------------------- 88 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------------
Confidence 3344555666668999999886654 2367888999999999999999999999888632
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+.+...+..+-.++.+.|+.++|+..|+...+
T Consensus 89 ---p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ---ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred ---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23567778888889999999999999998776
No 77
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.34 E-value=0.032 Score=44.36 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=75.8
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-------------
Q 041786 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKH-----GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF------------- 109 (260)
Q Consensus 48 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~------------- 109 (260)
.++.|.... |-+-|..+|-+.+..|... +.++-..-.+..|.+.|+..|..+|+.||..+
T Consensus 53 ~e~~F~aa~--~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 53 VEKQFEAAE--PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred hhhhhhccC--cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 344444433 3355788888888877654 55666667788899999999999999999554
Q ss_pred ----------------HHHHhCCCCCCHhhHHHHHHHHhccCC-HHHHHHHHHHHHh
Q 041786 110 ----------------VRMIRKGFVPDKRTHTILVNAWCSSGK-MREAQEFLQELSD 149 (260)
Q Consensus 110 ----------------~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 149 (260)
++|...|+.||..+--.||++|.+-+- ..+..+..-.|-+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 889999999999999999999999885 4456666666644
No 78
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.26 E-value=0.55 Score=39.14 Aligned_cols=205 Identities=13% Similarity=0.023 Sum_probs=128.2
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH----------------
Q 041786 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------------- 109 (260)
Q Consensus 46 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---------------- 109 (260)
..|+++...-.+.+-.| ...|..-..+--+.|+.+.+-..+.+..+. ++..+....+...
T Consensus 101 ~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 101 QQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred HHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 37888887766665433 335555567777889999999999998874 2233333333111
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHC-------------
Q 041786 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-------SAKQMVNKMIKQ------------- 169 (260)
Q Consensus 110 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~a~~l~~~m~~~------------- 169 (260)
.+..+.+ .-+.........+|.+.|++..+..++..|.+.|.-.+.. ....++++....
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 2222222 2346677889999999999999999999999999876665 111111111110
Q ss_pred --CCCCChhchHHHHHHHHhcCC-------------------------------------------CCCCcchHHHHHHH
Q 041786 170 --GSVPDLETFNSLIETICKSGE-------------------------------------------LGLCADVNTNKISI 204 (260)
Q Consensus 170 --g~~p~~~~~~~li~~~~~~~~-------------------------------------------~~~~~~~~t~~~li 204 (260)
..+-++..-.+++.-+.+.|+ ....-+...+.+|=
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 011122222333333333333 11222336778888
Q ss_pred HhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHhcCCCCCCC
Q 041786 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTHPPNRP 257 (260)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~ 257 (260)
.-|.+.+.+.+|...|+...+. .|+..+ |+..+|..++++-...-.+|+..
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 8899999999999999965554 455555 99999999998877665666543
No 79
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.072 Score=45.11 Aligned_cols=138 Identities=9% Similarity=0.108 Sum_probs=92.0
Q ss_pred cccchhhhhHHHHHHHHcccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041786 10 SKEDYFAAVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK 89 (260)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (260)
..++....+-++..+++....+.-.+-..+--.-...+|.+++-+... =++-|....+-|-..|-+.|+-..|.+.+-+
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~yd 617 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYD 617 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhh
Confidence 344444555556666666666666666666555566677777765433 2344688899999999999999999886544
Q ss_pred hhhcCCCCcHHHHHHHHHHH----------HHHH-hCCCCCCHhhHHHHHHHHhc-cCCHHHHHHHHHHHHh
Q 041786 90 CTAFNCQQCVLLYNSLHVCF----------VRMI-RKGFVPDKRTHTILVNAWCS-SGKMREAQEFLQELSD 149 (260)
Q Consensus 90 m~~~~~~~~~~~~~~li~~~----------~~m~-~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~ 149 (260)
--. =++-+..|.-.|-..| ..+. ..-++|+..-|-.+|..|.+ .|++.+|+++|.+..+
T Consensus 618 syr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 618 SYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred ccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 221 1233455555444333 1222 23689999999999988755 8999999999998765
No 80
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.22 E-value=0.14 Score=43.34 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
-.+|+..+...++++.|+++|+++.+.. | +. ...+.+.+...++-.+|.+++++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--p----------------------ev--~~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--P----------------------EV--AVLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--C----------------------cH--HHHHHHHHHhcCcHHHHHHHHHH
Confidence 3455666667789999999999998753 2 21 22234444444444444444444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCcc-hHHHHHHHHhhhhhccHH
Q 041786 147 LSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCAD-VNTNKISIPAVSKEFMID 214 (260)
Q Consensus 147 m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~-~~t~~~li~~~~~~g~~~ 214 (260)
..+.. +-|......-..-|.+.++ ....|+ ..+|..|..+|.+.|+++
T Consensus 226 aL~~~--------------------p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 226 ALKEN--------------------PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHhC--------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 33210 0011111111222222222 234454 447888888888888999
Q ss_pred HHHHHHHHHH
Q 041786 215 EAFRLLCNLV 224 (260)
Q Consensus 215 ~a~~~~~~m~ 224 (260)
+|...++.+.
T Consensus 286 ~ALlaLNs~P 295 (395)
T PF09295_consen 286 NALLALNSCP 295 (395)
T ss_pred HHHHHHhcCc
Confidence 9988887764
No 81
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.091 Score=48.39 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=42.9
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTI 126 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~ 126 (260)
.|+++|.+..+.. +.|.+.=|.+-..++..|++.+|+.+|.+.++.. .-+..+|-.
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-----------------------~~~~dv~lN 685 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-----------------------SDFEDVWLN 685 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-----------------------hhCCceeee
Confidence 5555555544332 2244555555556666666666666666665421 123345555
Q ss_pred HHHHHhccCCHHHHHHHHHHHH
Q 041786 127 LVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~ 148 (260)
+-+.|..+|++..|.++|+...
T Consensus 686 lah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666443
No 82
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.07 E-value=0.16 Score=41.05 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
.+|..++...-+.+.++.|+.+|.+.++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~ 30 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD 30 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC
Confidence 57888999999999999999999998853
No 83
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.02 E-value=0.48 Score=36.19 Aligned_cols=101 Identities=11% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHH-HhccCC--H
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNA-WCSSGK--M 137 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~-~~~~g~--~ 137 (260)
.|...|..|-..|...|++++|...|++..+. .| +...+..+-.+ +...|+ .
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------------------------~P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQL------------------------RGENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------CCCCHHHHHHHHHHHHHhcCCCCc
Confidence 46778888888888888888888888876652 23 45555555554 356666 4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHH
Q 041786 138 REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217 (260)
Q Consensus 138 ~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~ 217 (260)
++|.+++++..+.+ |+ +...+..+-..+...|++++|.
T Consensus 127 ~~A~~~l~~al~~d---------------------P~---------------------~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 127 PQTREMIDKALALD---------------------AN---------------------EVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHHHHHHhC---------------------CC---------------------ChhHHHHHHHHHHHcCCHHHHH
Confidence 78888888776532 21 3455666677788899999999
Q ss_pred HHHHHHHHCCC
Q 041786 218 RLLCNLVEDGH 228 (260)
Q Consensus 218 ~~~~~m~~~~~ 228 (260)
..|+++.+..-
T Consensus 165 ~~~~~aL~l~~ 175 (198)
T PRK10370 165 ELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHhhCC
Confidence 99999987643
No 84
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.01 E-value=0.2 Score=31.74 Aligned_cols=95 Identities=22% Similarity=0.158 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
.|..+...+.+.|++++|...|++..+.. ..+...+..+...+...|++++|.+.|+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-----------------------PDNADAYYNLAAAYYKLGKYEEALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----------------------CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888999999999999876521 1223556667777777888899988888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 146 ~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
...+.. |. +...+..+...+...|+.+.|...+.+..+
T Consensus 59 ~~~~~~---------------------~~---------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 59 KALELD---------------------PD---------------------NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhCC---------------------Cc---------------------chhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 765421 11 113455555667777788888888877654
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.01 E-value=0.43 Score=37.49 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 141 (260)
-|....+.......+.|++..|...|.+.... -++|...||.+=-+|.+.|+++.|.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----------------------~p~d~~~~~~lgaaldq~Gr~~~Ar 154 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----------------------APTDWEAWNLLGAALDQLGRFDEAR 154 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----------------------CCCChhhhhHHHHHHHHccChhHHH
Confidence 35556667888888889999999998887652 3467888888888899999999998
Q ss_pred HHHHHHHh
Q 041786 142 EFLQELSD 149 (260)
Q Consensus 142 ~~~~~m~~ 149 (260)
.-|.+..+
T Consensus 155 ~ay~qAl~ 162 (257)
T COG5010 155 RAYRQALE 162 (257)
T ss_pred HHHHHHHH
Confidence 88877665
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.98 E-value=0.31 Score=34.31 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+......+...+.+.|+.++|.+.|+.....+ +.+...|..+-..+.+.|++++|..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------p~~~~~~~~la~~~~~~~~~~~A~~ 72 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-----------------------PYNSRYWLGLAACCQMLKEYEEAID 72 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----------------------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788889999999999999877532 2356777788888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
.++...+.+ | .+...+..+-..|...|+.++|...|+.
T Consensus 73 ~~~~~~~~~---------------------p---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 73 AYALAAALD---------------------P---------------------DDPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred HHHHHHhcC---------------------C---------------------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 998766421 1 1334444555677788899999999988
Q ss_pred HHHCC
Q 041786 223 LVEDG 227 (260)
Q Consensus 223 m~~~~ 227 (260)
..+..
T Consensus 111 al~~~ 115 (135)
T TIGR02552 111 AIEIC 115 (135)
T ss_pred HHHhc
Confidence 87753
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.95 E-value=0.64 Score=45.01 Aligned_cols=187 Identities=14% Similarity=0.035 Sum_probs=118.1
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCcH---HHHHHHHH---HH-------HHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF-NCQQCV---LLYNSLHV---CF-------VRM 112 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~---~~~~~li~---~~-------~~m 112 (260)
.|.+.-+..... +-+...|-..|....+.+++++|++++++.... +++-.. ..|-+++. .| +-+
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344444444333 224678888889999999999999999987642 433332 34555552 22 111
Q ss_pred HhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-
Q 041786 113 IRKGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE- 190 (260)
Q Consensus 113 ~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~- 190 (260)
.+.---.| -..|..|...|.+.+.+++|.++++.|.+ +.| -....|...+..+.++++
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K------------------KF~--q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLK------------------KFG--QTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHH------------------Hhc--chhhHHHHHHHHHhcccHH
Confidence 11111123 35677889999999999999999998876 333 355667777777776665
Q ss_pred ----------CCCCcc---hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCc---CCCc-------ccHHHHHHHHHHH
Q 041786 191 ----------LGLCAD---VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL---FPSL-------GQFDDAFCFFSEM 247 (260)
Q Consensus 191 ----------~~~~~~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~-------g~~~~a~~~~~~m 247 (260)
...-|- +..-.-....-.+.|+.+.++.+|+......-+- |... |..+.++.+|++.
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 222333 2222233334457788888888998887653111 1111 8889999999999
Q ss_pred HhcCCCCC
Q 041786 248 QIKTHPPN 255 (260)
Q Consensus 248 ~~~g~~p~ 255 (260)
...++.|-
T Consensus 1661 i~l~l~~k 1668 (1710)
T KOG1070|consen 1661 IELKLSIK 1668 (1710)
T ss_pred HhcCCChh
Confidence 99888774
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.92 E-value=0.031 Score=34.25 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=42.9
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
.+.|++++|+++|+.+.... | +...+-.+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~------------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN------------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT------------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999987632 4 6677778999999999999999999987764
No 89
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.90 E-value=1.2 Score=39.79 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=66.7
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC------CCCcHHHHHHHHHHH-----------
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN------CQQCVLLYNSLHVCF----------- 109 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~----------- 109 (260)
.+.++++...+. ++..-+--|..+++.+++++|-+.+....... .+.+--.|.-+....
T Consensus 156 ts~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 156 TSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred HHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 444555444332 44446667788888899999988888776432 233344455444111
Q ss_pred -HHHHhCCC--CCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 110 -VRMIRKGF--VPD--KRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 110 -~~m~~~g~--~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+.+.+.|+ -+| ...|++|-+-|.+.|.+++|.++|++-.+.
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 66666665 345 358899999999999999999999975543
No 90
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.78 E-value=0.73 Score=39.51 Aligned_cols=105 Identities=18% Similarity=0.116 Sum_probs=80.2
Q ss_pred CCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC-hhchHHHHHHHHhcCC-----
Q 041786 118 VPDK-RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGE----- 190 (260)
Q Consensus 118 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~~~----- 190 (260)
.|+. .-+......+.+.|+..+|.+-++.+... .|+ ....-.+-.+|.+.|+
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---------------------~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---------------------DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------------CCCccHHHHHHHHHHHhcCChHHHH
Confidence 3554 44456678899999999999999988863 455 3444455666666666
Q ss_pred -------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhc
Q 041786 191 -------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250 (260)
Q Consensus 191 -------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~ 250 (260)
....-|...|..|-.+|...|+..++..-.-+..... |++++|..++....+.
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~-------G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA-------GRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHh
Confidence 4445678999999999999999999998888776554 8899998888776654
No 91
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.77 E-value=0.099 Score=36.74 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=58.2
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHH
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t 199 (260)
|..++.++|.++++.|+++....+.+..= |+..+. ...++. ........|+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~-------------~~~~~~-----------~~~~spl~Pt~~l 54 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNG-------------KKKEGD-----------YPPSSPLYPTSRL 54 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCC-------------ccccCc-----------cCCCCCCCCCHHH
Confidence 45678899999999999999998886443 222110 000000 1222567789999
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 200 NKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
..+++.+|+.+|++..|.++.+...+.
T Consensus 55 L~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 55 LIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999888765
No 92
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.51 Score=40.59 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=101.4
Q ss_pred hcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCcHHHHHHHHHHH--------HHH
Q 041786 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNC-QQCVLLYNSLHVCF--------VRM 112 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~--------~~m 112 (260)
+++...+.+-|+...+....++. .|--+-..|.+..+.++..+.|+...+.+- -||++-...-+... .+.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 44555777777776655433222 266677778888888888888887776542 23333322222111 122
Q ss_pred Hh-CCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 113 IR-KGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 113 ~~-~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
.+ ..+.|. ...|--+--+..|.+.++++...|++.+++ -|+..++..+|.+..- |-.-|..-+.-|-+.-+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLt-----DqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILT-----DQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHh-----hHHhHHHHHHHHHHHHh
Confidence 21 134443 455655666666778888888888887754 3444444444443321 11112222222211111
Q ss_pred ---------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------ccHHHHHHHHHHH
Q 041786 191 ---------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----------GQFDDAFCFFSEM 247 (260)
Q Consensus 191 ---------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------g~~~~a~~~~~~m 247 (260)
.+..|-+.--..++. ..+++..|..++....+.+-+.+... |+.++|+++|++-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111121111111222 44888888888877665433332222 8888999888764
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.72 E-value=0.71 Score=35.80 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-KRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
.....|--+|.+.|+...|..-+++..+.. |+ ..+|..+-..|-+.|..+.|.+-
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D------------------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~ 91 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD------------------------PSYYLAHLVRAHYYQKLGENDLADES 91 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------cccHHHHHHHHHHHHHcCChhhHHHH
Confidence 456667788999999999999999988743 33 23444555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC--------------CCCCcchHHHHHHHHhhhh
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--------------LGLCADVNTNKISIPAVSK 209 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--------------~~~~~~~~t~~~li~~~~~ 209 (260)
|+...+.. +-+....|..=.-+|..|. ....--..||..+--+..+
T Consensus 92 YrkAlsl~--------------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 92 YRKALSLA--------------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK 151 (250)
T ss_pred HHHHHhcC--------------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh
Confidence 55443321 0011222222222222222 1111223456666666677
Q ss_pred hccHHHHHHHHHHHHHCCCCcCCCc----------ccHHHHHHHHHHHHhcCC
Q 041786 210 EFMIDEAFRLLCNLVEDGHKLFPSL----------GQFDDAFCFFSEMQIKTH 252 (260)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~p~~~~----------g~~~~a~~~~~~m~~~g~ 252 (260)
.|+++.|...|++-.+..-.-.+.. |++-.|..+++.....|.
T Consensus 152 ~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 152 AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 7888888888877766532211111 777777777777666543
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.67 E-value=0.95 Score=36.95 Aligned_cols=100 Identities=16% Similarity=0.079 Sum_probs=57.6
Q ss_pred HHHHHHHhcccC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-------------H
Q 041786 47 SMWKTIELMKPD-SLSVF--PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------V 110 (260)
Q Consensus 47 ~a~~~~~~m~~~-g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------------~ 110 (260)
.+..-+.++... .+.|+ ...|..+-..|.+.|+.++|...|++..+.. +.+...|+.+-..+ +
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444555555432 23333 4567777778999999999999999888643 11234444443222 1
Q ss_pred HHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 111 RMIRKGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 111 ~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
... .+.|+ ...|..+-.++...|++++|.+.|+...+
T Consensus 123 ~Al--~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 123 SVL--ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 23343 34555555566666777777766665554
No 95
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.64 E-value=0.41 Score=32.53 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
.++-.+...+.+.|++++|...|+.+.+.. .+-......+..+-..+.+.|+++.|.+.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 62 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--------------------PKSTYAPNAHYWLGEAYYAQGKYADAAKAF 62 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------CCccccHHHHHHHHHHHHhhccHHHHHHHH
Confidence 456677788889999999999999887532 011112345566888899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 145 ~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
+...... |+.. .....+..+-..+.+.|+.++|...++++.
T Consensus 63 ~~~~~~~---------------------p~~~------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 63 LAVVKKY---------------------PKSP------------------KAPDALLKLGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHC---------------------CCCC------------------cccHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9877521 2210 012223344455667888899999998888
Q ss_pred HCC
Q 041786 225 EDG 227 (260)
Q Consensus 225 ~~~ 227 (260)
+..
T Consensus 104 ~~~ 106 (119)
T TIGR02795 104 KRY 106 (119)
T ss_pred HHC
Confidence 764
No 96
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.62 E-value=0.86 Score=41.97 Aligned_cols=188 Identities=18% Similarity=0.243 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHH---------h--CCCCCCH-hhHHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMI---------R--KGFVPDK-RTHTILVNA 130 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~---------~--~g~~p~~-~~~~~li~~ 130 (260)
+...|.-+..+|.+.|++.+|+.+|..+.....-.+...|-.+-.|+.+.. + -...|+. ..-..|-.-
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL 492 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence 456677777788888888888888887776644445666666666661110 0 1234543 233445566
Q ss_pred HhccCCHHHHHHHHHHHHhCC--------CCCCHH--------------------HHHHHHHHHH----------HC---
Q 041786 131 WCSSGKMREAQEFLQELSDKG--------FNPPVR--------------------SAKQMVNKMI----------KQ--- 169 (260)
Q Consensus 131 ~~~~g~~~~a~~~~~~m~~~~--------~~~~~~--------------------~a~~l~~~m~----------~~--- 169 (260)
+-+.|+.|+|.++++.+..-+ ..|+.. .+..++.... +.
T Consensus 493 ~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~ 572 (895)
T KOG2076|consen 493 YQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRR 572 (895)
T ss_pred HHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 788999999999999865322 122211 1111111110 00
Q ss_pred -----CCCCChhchHHHHHHHHhcCC-------------------CCCCcc--hHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 170 -----GSVPDLETFNSLIETICKSGE-------------------LGLCAD--VNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 170 -----g~~p~~~~~~~li~~~~~~~~-------------------~~~~~~--~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
+..-...+...++.+-.+.++ .+...+ -..+.-+|..+++.+++++|..+...+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a 652 (895)
T KOG2076|consen 573 AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTA 652 (895)
T ss_pred hhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 011223333344444444443 222221 245567788999999999999999888
Q ss_pred HHCCCCcCCCc----------------ccHHHHHHHHHHHHhc
Q 041786 224 VEDGHKLFPSL----------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 224 ~~~~~~p~~~~----------------g~~~~a~~~~~~m~~~ 250 (260)
....+.-...- +++..|...++.|...
T Consensus 653 ~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 653 LEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 87653322211 8889999988888754
No 97
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.53 E-value=0.51 Score=33.93 Aligned_cols=66 Identities=12% Similarity=-0.006 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
..|..++..+. .++...+...++.+.+..- +........-.+-..+...|++++|...|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~--------------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l 71 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYP--------------------SSPYAALAALQLAKAAYEQGDYDEAKAAL 71 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCC--------------------CChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45666666664 7778888888888776320 00011122223456788899999999999
Q ss_pred HHHHhCC
Q 041786 145 QELSDKG 151 (260)
Q Consensus 145 ~~m~~~~ 151 (260)
+......
T Consensus 72 ~~~~~~~ 78 (145)
T PF09976_consen 72 EKALANA 78 (145)
T ss_pred HHHHhhC
Confidence 9888643
No 98
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.78 Score=39.55 Aligned_cols=172 Identities=15% Similarity=0.079 Sum_probs=99.1
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------- 109 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------- 109 (260)
.+.........++.|.+-.+..- -|..+|..=-+.+.-.+++++|..=|++..... |.. .|.-+=.|+
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~-~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PEN-AYAYIQLCCALYRQHKI 444 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhh-hHHHHHHHHHHHHHHHH
Confidence 33333344466666666544432 234556655555566667777777777766532 221 111111222
Q ss_pred -HHH-----HhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHHCCCCCC
Q 041786 110 -VRM-----IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK---------GFNPPVRSAKQMVNKMIKQGSVPD 174 (260)
Q Consensus 110 -~~m-----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~~a~~l~~~m~~~g~~p~ 174 (260)
+.| ....++-....||..-..+...+++++|.+-|+..... |..|-+.+|.-+++.=
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-------- 516 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-------- 516 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh--------
Confidence 111 11234445678888999999999999999999865432 4445555666665521
Q ss_pred hhchHHHHHHHHhcCCCCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 175 LETFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
.-++.-+..+.+.- .+.| ....|..|-..-.+.|++++|.++|+.-.
T Consensus 517 -~d~~~a~~Ll~KA~--e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 -EDINQAENLLRKAI--ELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hhHHHHHHHHHHHH--ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11222222222222 1223 34568888888899999999999998754
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.46 E-value=0.92 Score=35.37 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=37.7
Q ss_pred hhhhcchHHHHHHHHhcccCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 39 NLTLISELSMWKTIELMKPDSL-SVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
+...+....|...|++..+... .|. ...+..+-..+.+.|++++|...|+++.+.
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3344555578888887754421 121 246677788888999999999999988764
No 100
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.44 E-value=0.77 Score=39.21 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=50.8
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC------
Q 041786 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------ 190 (260)
Q Consensus 117 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~------ 190 (260)
++-|..+.+-|-.-|-+.|+-..|++.+-+--+ . ++.|..|.--|-..|....-
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyr--y------------------fp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--Y------------------FPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--c------------------cCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 334567778888888888888888877653221 1 11222222222222221111
Q ss_pred -----CCCCcchHHHHHHHHhh-hhhccHHHHHHHHHHHHH
Q 041786 191 -----LGLCADVNTNKISIPAV-SKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 191 -----~~~~~~~~t~~~li~~~-~~~g~~~~a~~~~~~m~~ 225 (260)
.-++|+..-|..+|..| .+.|.+.+|+.+|+..-+
T Consensus 648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34567777777776544 456778888877777654
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.42 E-value=2.1 Score=39.44 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
++..+--|-....+.|..++|+.+++...+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~ 114 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ 114 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 456666666666777777777777776664
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.27 E-value=1.9 Score=37.79 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLH 106 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li 106 (260)
-|+.+|+.||.-+... .+++++++++++.. ..|+ ...|..-|
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi 60 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYI 60 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHH
Confidence 4789999999988766 89999999999884 3343 34454444
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.27 E-value=0.33 Score=38.09 Aligned_cols=106 Identities=17% Similarity=0.082 Sum_probs=80.0
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC---------
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--------- 190 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--------- 190 (260)
|....+...+...+.|++..|...|.+...- -++|...|+.+=-+|-+.|+
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------------------APTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------------------CCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 4445666899999999999999999987753 35688899999999999998
Q ss_pred --CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------ccHHHHHHHHH
Q 041786 191 --LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----------GQFDDAFCFFS 245 (260)
Q Consensus 191 --~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------g~~~~a~~~~~ 245 (260)
..+.| +....|.|--.|.-.|+.+.|+.++......+......- |++++|..+..
T Consensus 159 qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 159 QALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 34444 456678888888889999999999988776653222211 78887776653
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.25 E-value=2.4 Score=38.99 Aligned_cols=146 Identities=8% Similarity=0.010 Sum_probs=99.5
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
....+...+|+.+++...+. .|+ ......+...+.+.+++++|+..+++....
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------------------------ 149 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------------------------ 149 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------------------------
Confidence 34455555888888887655 465 566677888999999999999999987763
Q ss_pred CCCHh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcc
Q 041786 118 VPDKR-THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196 (260)
Q Consensus 118 ~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 196 (260)
.|+.. ..+.+-.++.+.|..++|..+|++....+ |+ +
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~---------------------p~---------------------~ 187 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQH---------------------PE---------------------F 187 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC---------------------CC---------------------c
Confidence 36654 45556667788999999999999887521 11 2
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHHHCC---CCc-CCCcccHHHHHHHHHHHHhcCC
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG---HKL-FPSLGQFDDAFCFFSEMQIKTH 252 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p-~~~~g~~~~a~~~~~~m~~~g~ 252 (260)
...+..+-..+-..|+.++|...|+...+.. .+- ....+++..-..+++++.-.+.
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 3445555566777889999999999887542 221 1111555555666666654443
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.23 E-value=1.1 Score=34.93 Aligned_cols=158 Identities=16% Similarity=0.039 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhccCCH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD----KRTHTILVNAWCSSGKM 137 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~ 137 (260)
.....+-.+...+.+.|++++|...|+++.... |+ ...+..+-.++.+.|++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~------------------------p~~~~~~~a~~~la~~~~~~~~~ 86 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY------------------------PFSPYAEQAQLDLAYAYYKSGDY 86 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CCchhHHHHHHHHHHHHHhcCCH
Confidence 346677788888999999999999999887532 32 23556677788889999
Q ss_pred HHHHHHHHHHHhCCC-CCCH-------------------------HHHHHHHHHHHHCCCCCChh-chHHHHHHHHhcCC
Q 041786 138 REAQEFLQELSDKGF-NPPV-------------------------RSAKQMVNKMIKQGSVPDLE-TFNSLIETICKSGE 190 (260)
Q Consensus 138 ~~a~~~~~~m~~~~~-~~~~-------------------------~~a~~l~~~m~~~g~~p~~~-~~~~li~~~~~~~~ 190 (260)
++|...++++.+..- .+.. ..|...|+...+.. |+.. .+..+. .+....
T Consensus 87 ~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~-~~~~~~- 162 (235)
T TIGR03302 87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKK-RMDYLR- 162 (235)
T ss_pred HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHH-HHHHHH-
Confidence 999999998865321 2221 12333333333221 2211 111110 000000
Q ss_pred CCCCcch-HHHHHHHHhhhhhccHHHHHHHHHHHHHCCC-CcCCCc------------ccHHHHHHHHHHHHhcC
Q 041786 191 LGLCADV-NTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-KLFPSL------------GQFDDAFCFFSEMQIKT 251 (260)
Q Consensus 191 ~~~~~~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~------------g~~~~a~~~~~~m~~~g 251 (260)
... ...-.+-..|.+.|+.++|...|++..+..- .|+..- |+.++|..+++.+..+.
T Consensus 163 ----~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 163 ----NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred ----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 000 0011344567888999999999999886532 121111 99999999998887653
No 106
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.16 E-value=1.3 Score=36.40 Aligned_cols=65 Identities=12% Similarity=0.027 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041786 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140 (260)
Q Consensus 61 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 140 (260)
..|-.--+.|-.+|.+.|.+.+|.+.|+.-.+ -.|-..||-.|-++|.+..+++.|
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~------------------------q~~~~dTfllLskvY~ridQP~~A 275 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLT------------------------QFPHPDTFLLLSKVYQRIDQPERA 275 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhh------------------------cCCchhHHHHHHHHHHHhccHHHH
Confidence 33444447888999999999999998886554 246777888899999999999999
Q ss_pred HHHHHHHHh
Q 041786 141 QEFLQELSD 149 (260)
Q Consensus 141 ~~~~~~m~~ 149 (260)
+.+|.+-.+
T Consensus 276 L~~~~~gld 284 (478)
T KOG1129|consen 276 LLVIGEGLD 284 (478)
T ss_pred HHHHhhhhh
Confidence 999987654
No 107
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.10 E-value=0.22 Score=35.79 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
....++..+...|++++|..+...+.... +.|...|-.+|.+|.+.|+...|.++|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----------------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-----------------------PYDEEAYRLLMRALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 45666777888999999999999887632 2467899999999999999999999999
Q ss_pred HHHh
Q 041786 146 ELSD 149 (260)
Q Consensus 146 ~m~~ 149 (260)
.+.+
T Consensus 121 ~~~~ 124 (146)
T PF03704_consen 121 RYRR 124 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 108
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.01 E-value=0.17 Score=31.90 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC-CCC-HhhHHHHHHHHhccCCHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF-VPD-KRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~a~ 141 (260)
..+|+.+-..|...|++++|+..|++..+. ....|- .|+ ..+++.+-..|.+.|++++|+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI------------------EEQLGDDHPDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------------------HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467888999999999999999999998852 111221 233 567888889999999999999
Q ss_pred HHHHHHH
Q 041786 142 EFLQELS 148 (260)
Q Consensus 142 ~~~~~m~ 148 (260)
+.+++..
T Consensus 67 ~~~~~al 73 (78)
T PF13424_consen 67 EYYQKAL 73 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998644
No 109
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.97 E-value=2 Score=37.11 Aligned_cols=101 Identities=9% Similarity=0.012 Sum_probs=63.6
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH---------HHHHHHhC--
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV---------CFVRMIRK-- 115 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~---------~~~~m~~~-- 115 (260)
.|..+|+...... .-+...|--.+..=.++..+..|..+++.....--+.| ..|-.-+. +.+++.+.
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8888888876554 34677788888888899999999999998765321111 11211111 11222222
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
...|+...|++.|+.=.+-..++.|.+++++..-
T Consensus 169 ~w~P~eqaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 169 EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 4567777777777777777777777777766553
No 110
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=1.6 Score=34.68 Aligned_cols=35 Identities=11% Similarity=-0.163 Sum_probs=22.8
Q ss_pred CCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 193 ~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
..|+..+-|-...++...|++++|..++++..++.
T Consensus 203 ~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 203 TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 34556666666666667777777777777766553
No 111
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.77 E-value=2.7 Score=37.70 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh-cCCCCcHHHHHHHHHHH---------HHHHhCCCCCCHhhHHHHHHHHhccC
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTA-FNCQQCVLLYNSLHVCF---------VRMIRKGFVPDKRTHTILVNAWCSSG 135 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~---------~~m~~~g~~p~~~~~~~li~~~~~~g 135 (260)
.|-.-+....+.|++...+..|+.... ..+..-...|...+... -...+.=++.+...-+--|..+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 355555566666666666666655432 12222222333333111 00011111223334677788899999
Q ss_pred CHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcc--hHHHHHHHHhhh
Q 041786 136 KMREAQEFLQELSDKGFN-----PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD--VNTNKISIPAVS 208 (260)
Q Consensus 136 ~~~~a~~~~~~m~~~~~~-----~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~--~~t~~~li~~~~ 208 (260)
++++|-+.+......... ++...-+..+.++.... |+. +.+.=+++..|.|. +.-+| ...|+.|-.-|.
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~--p~~-~~slnvdaiiR~gi-~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN--PDK-VQSLNVDAIIRGGI-RRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC--cch-hcccCHHHHHHhhc-ccCcHHHHHHHHHHHHHHH
Confidence 999998888877654321 12222222222222221 221 22223445555553 23344 467999999999
Q ss_pred hhccHHHHHHHHHHHHHC
Q 041786 209 KEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~ 226 (260)
+.|++++|..+|++-...
T Consensus 260 r~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 999999999999886654
No 112
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.73 E-value=1 Score=36.80 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=33.6
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHhhhcCC---CCcHHHHHHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGK--H----GLIDNAVEVFNKCTAFNC---QQCVLLYNSLH 106 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~m~~~~~---~~~~~~~~~li 106 (260)
+..++++.|.+.|++-+..+|-+-.-.... . ....+|..+|+.|++... .++..++..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 666677777777777777666542222222 1 134667777777776532 23344444444
No 113
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.73 E-value=0.075 Score=34.21 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=52.5
Q ss_pred HHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-Hhh
Q 041786 46 LSMWKTIELMKPDSL-SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-KRT 123 (260)
Q Consensus 46 ~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-~~~ 123 (260)
..|+.+++.+.+... .++...+-.+..+|.+.|++++|..+++. .+. .|+ ...
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------------------------~~~~~~~ 60 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------------------------DPSNPDI 60 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------------------------HHCHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------------------------CCCCHHH
Confidence 367777877765532 23455566688999999999999999987 321 122 233
Q ss_pred HHHHHHHHhccCCHHHHHHHHHH
Q 041786 124 HTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 124 ~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
.-.+-.+|.+.|++++|+++|++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhc
Confidence 33456778899999999999875
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.55 E-value=1.2 Score=34.04 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=80.3
Q ss_pred hhhhHHHHHHHHcccch---hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcCC--hHHHHHHHH
Q 041786 15 FAAVNHIANIVRHDIYA---ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEE-FGKHGL--IDNAVEVFN 88 (260)
Q Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~~--~~~a~~~~~ 88 (260)
-..+..+...++.+... -..+-..+...+...+|.+.++...+... -+...+..+-.+ |.+.|+ .++|.++++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34445555555554433 23344456677777799999998776642 257777777776 467777 599999999
Q ss_pred HhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 041786 89 KCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 89 ~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 151 (260)
+..+.+ | +...+..+-..+.+.|++++|...|+++.+..
T Consensus 135 ~al~~d------------------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 135 KALALD------------------------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhC------------------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 988643 4 56777888888999999999999999988753
No 115
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.53 E-value=0.23 Score=30.23 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=43.5
Q ss_pred cchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHH
Q 041786 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 104 (260)
+...+|.++|+...+..- -+...+-.+..+|.+.|++++|..+++.+.... |+...|..
T Consensus 5 ~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~ 63 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQ 63 (68)
T ss_dssp THHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHH
Confidence 344588999988865532 267888899999999999999999999998753 44334433
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.52 E-value=1.1 Score=36.51 Aligned_cols=105 Identities=19% Similarity=0.135 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH---HHH-------------HHHHhCCCCCCHhhHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH---VCF-------------VRMIRKGFVPDKRTHT 125 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~-------------~~m~~~g~~p~~~~~~ 125 (260)
.+.+.....+..|.+.++++.|.+.++.|++.+ .|....+..- ..+ +++.+ ...++..+.|
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~ln 205 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLN 205 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHH
Confidence 467777888999999999999999999998743 3433322221 111 44433 4567888889
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~ 189 (260)
.+..++...|++++|++++.+....+ +-|..+...++......|
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~--------------------~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKD--------------------PNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC---------------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc--------------------cCCHHHHHHHHHHHHHhC
Confidence 99999999999999999988765432 224556667777777777
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.44 E-value=0.99 Score=30.58 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=64.8
Q ss_pred hhhcchHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 40 LTLISELSMWKTIELMKPDSL--SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
...+....|.+.|..+.+..- ......+..+...+.+.|+++.|...|+.+.... .+-
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------p~~ 72 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--------------------PKS 72 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--------------------CCC
Confidence 344555588888888865421 1124567778899999999999999999887521 111
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
......+..+-.++.+.|+.++|.+.+++..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 112345666777888999999999999988764
No 118
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.37 E-value=1.4 Score=35.71 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=53.4
Q ss_pred HHHHhhhhhcchHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHH
Q 041786 34 TLNRLNLTLISELSMWKTIELMKPDS-LSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112 (260)
Q Consensus 34 ~~~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m 112 (260)
.++++..+......|.++|....+.+ +..++....++|..+ ..++.+.|..+|+...+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~------------------- 65 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK------------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-------------------
Confidence 34445555555668888888876443 334444444444333 245566688888877652
Q ss_pred HhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 113 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+..+...|..-|+.+.+.|+.+.|..+|++....
T Consensus 66 ----f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 66 ----FPSDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp ----HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred ----CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 2234555666666667777777777777766543
No 119
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.27 E-value=0.28 Score=29.57 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=45.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
+-..+.+.|++++|...|++..+.. | +...+..+-..+...|++++|...|++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD------------------------PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS------------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457889999999999999988632 4 56677778888999999999999999886
Q ss_pred h
Q 041786 149 D 149 (260)
Q Consensus 149 ~ 149 (260)
+
T Consensus 59 ~ 59 (65)
T PF13432_consen 59 E 59 (65)
T ss_dssp H
T ss_pred H
Confidence 5
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.19 E-value=1.3 Score=37.21 Aligned_cols=83 Identities=12% Similarity=-0.118 Sum_probs=65.5
Q ss_pred cchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CH
Q 041786 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DK 121 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~ 121 (260)
+....|.+.|++..+..- -+...|..+-.+|.+.|++++|+..++...+. .| +.
T Consensus 16 ~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------------------------~P~~~ 70 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL------------------------DPSLA 70 (356)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CcCCH
Confidence 344488888888765532 25677888889999999999999999988763 24 45
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
..|..+-.+|.+.|++++|+..|++..+.
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 67777888899999999999999988764
No 121
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.00 E-value=0.91 Score=28.49 Aligned_cols=84 Identities=17% Similarity=0.087 Sum_probs=62.4
Q ss_pred hcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCH
Q 041786 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK 121 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~ 121 (260)
.+...+|.+.++...+.. ..+...+..+...+...+++++|.+.|+...... ..+.
T Consensus 13 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~ 68 (100)
T cd00189 13 LGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-----------------------PDNA 68 (100)
T ss_pred HhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------------Ccch
Confidence 344457888888876543 2234677888889999999999999999876532 1233
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..+..+...+...|+.+.|...+....+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 5777788889999999999998887654
No 122
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.87 E-value=4 Score=35.38 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=71.6
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH--------------------------HHHHHHHHHHHCCCCC
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR--------------------------SAKQMVNKMIKQGSVP 173 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------------------~a~~l~~~m~~~g~~p 173 (260)
|-.+|--.++---..|+.+...++|++... +++|-.. .+.+++....+ -++-
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 455666667777778999999999998765 3444222 55666666555 2333
Q ss_pred ChhchHHHHHHHHhc----CC-----------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 174 DLETFNSLIETICKS----GE-----------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 174 ~~~~~~~li~~~~~~----~~-----------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
...||.-+=-.|+.. .+ .|..|-..+|..-|..=.+.+.+|.+..+|+...+-+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455666554444432 22 6777888888888888888888888888888887654
No 123
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.69 E-value=0.56 Score=28.57 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccC-CHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSG-KMREA 140 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~a 140 (260)
++..|..+-..+.+.|++++|+..|++..+.. | +...|..+-.+|.+.| ++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------------------------p~~~~~~~~~g~~~~~~~~~~~~A 57 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------------------------PNNAEAYYNLGLAYMKLGKDYEEA 57 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------------------------TTHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------CCCHHHHHHHHHHHHHhCccHHHH
Confidence 46788889999999999999999999988632 4 4567777888888899 79999
Q ss_pred HHHHHHHHh
Q 041786 141 QEFLQELSD 149 (260)
Q Consensus 141 ~~~~~~m~~ 149 (260)
++.|+...+
T Consensus 58 ~~~~~~al~ 66 (69)
T PF13414_consen 58 IEDFEKALK 66 (69)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 124
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.59 E-value=0.66 Score=33.27 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=43.3
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
..+.......+....|.++...+.... +.+...|-.+|.+|.+.|+...|.++|+.+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334444555666668888888876543 34778999999999999999999999999875
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.39 E-value=0.35 Score=31.00 Aligned_cols=49 Identities=27% Similarity=0.397 Sum_probs=36.0
Q ss_pred cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
.|+++.|+.+|+++.+.. ...++...+-.+-.+|.+.|++++|.++++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~---------------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD---------------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH---------------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHC---------------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 578899999999888631 0112344555588999999999999999986
No 126
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.33 E-value=5.5 Score=35.34 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=44.8
Q ss_pred cchhhhhHH-HHHHHHccc-chhHHHHHhhhhhcchHHHHHHHHhc----ccCC----------CCCCH--HHHHHHHHH
Q 041786 12 EDYFAAVNH-IANIVRHDI-YAERTLNRLNLTLISELSMWKTIELM----KPDS----------LSVFP--QTLSLIIEE 73 (260)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~m----~~~g----------~~~~~--~~~~~li~~ 73 (260)
+.|...++. +...++++. .....+..++..-.+..-..+++... ...| -.|+. .+|..+.+.
T Consensus 124 ~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh 203 (517)
T PF12569_consen 124 DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH 203 (517)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence 445555555 455555654 44566666655433333333333332 2211 12444 344556677
Q ss_pred HHhcCChHHHHHHHHHhhhc
Q 041786 74 FGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~ 93 (260)
|-..|+.++|++..++..+.
T Consensus 204 yd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 77888888888888877764
No 127
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.22 E-value=0.73 Score=36.96 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=57.2
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHH-H-HHHHHH-HHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHH
Q 041786 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMRE-A-QEFLQE-LSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186 (260)
Q Consensus 110 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a-~~~~~~-m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~ 186 (260)
+.|.+.|+.-|..+|+.||+.+=|..-.-. . +.+|-. -++. .-+..++++|...|+.||-.+-..|++++.
T Consensus 96 k~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ------~C~I~vLeqME~hGVmPdkE~e~~lvn~FG 169 (406)
T KOG3941|consen 96 KYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQ------NCAIKVLEQMEWHGVMPDKEIEDILVNAFG 169 (406)
T ss_pred HHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhh------hHHHHHHHHHHHcCCCCchHHHHHHHHHhc
Confidence 889999999999999999999877653221 1 122211 1111 157889999999999999999999999999
Q ss_pred hcCC
Q 041786 187 KSGE 190 (260)
Q Consensus 187 ~~~~ 190 (260)
+.+.
T Consensus 170 r~~~ 173 (406)
T KOG3941|consen 170 RWNF 173 (406)
T ss_pred cccc
Confidence 9885
No 128
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.19 E-value=7.2 Score=36.30 Aligned_cols=64 Identities=11% Similarity=-0.098 Sum_probs=29.0
Q ss_pred cchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 29 IYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
..++.++-.++-..+....+...+-..- .--+-|...|-.+-....+.|+++.|.-.|.+..+.
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA 236 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 3444445544444444443333221111 111123455555555555555555555555555543
No 129
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.15 E-value=7.7 Score=36.52 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=31.2
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 110 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+.+...+-.+-....|.+-.-....|+++.|...|......
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 44555666677778888888888899999999988876554
No 130
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.71 E-value=7.5 Score=35.20 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC------------------------------------------CCCCc
Q 041786 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------------------------------------------LGLCA 195 (260)
Q Consensus 158 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~------------------------------------------~~~~~ 195 (260)
.|..+|+.-.-.+ +-|...|-..|..=.|.|+ ...+-
T Consensus 737 rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~ 815 (913)
T KOG0495|consen 737 RARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH 815 (913)
T ss_pred hHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence 6777777665554 3467778888888888887 34555
Q ss_pred chHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 196 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
|.+..-.+-..+-...++++|...|.+.++.+
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 66666666667777788888888888777643
No 131
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.70 E-value=0.74 Score=28.86 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=48.9
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcc-hHH
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD-VNT 199 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~-~~t 199 (260)
..+|+.+-..|.+.|++++|+..|++..+ +...+ | + ..|+ ..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~------------~~~~~---~---~------------------~~~~~a~~ 48 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALD------------IEEQL---G---D------------------DHPDTANT 48 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH------------HHHHT---T---T------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------HHHHH---C---C------------------CCHHHHHH
Confidence 35788888999999999999999997653 21111 1 1 1122 456
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 200 NKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
++.+-..|...|+.++|.+.+++..
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788889999999999999998754
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.61 E-value=6.1 Score=34.80 Aligned_cols=101 Identities=11% Similarity=0.180 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC-cHHHHHHHHHHH--------HHHHhCCC--CCCHhhH-HHHHHHHh
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ-CVLLYNSLHVCF--------VRMIRKGF--VPDKRTH-TILVNAWC 132 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~--------~~m~~~g~--~p~~~~~-~~li~~~~ 132 (260)
-+|..+|..-.|..-+..|+.+|.+.++.+..+ .+.+.++++..+ -.+.+.|+ -+|...| ..-++.+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 367777777777777888888888888777666 667777777322 22333332 2344444 35566677
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041786 133 SSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167 (260)
Q Consensus 133 ~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~ 167 (260)
+.|+=..|.-+|++...+++.+ +++.++++.|.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~--~ks~~Iw~r~l 479 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSA--DKSKEIWDRML 479 (656)
T ss_pred HhCcchhHHHHHHHHHhccCCh--hhhHHHHHHHH
Confidence 7777777777777777663333 34444444443
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.56 E-value=3 Score=35.10 Aligned_cols=91 Identities=13% Similarity=-0.053 Sum_probs=67.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 041786 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 151 (260)
..+.+.|++++|+..|++..+.. .-+...|..+-.+|.+.|++++|+..+++....
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-----------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l- 65 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-----------------------PNNAELYADRAQANIKLGNFTEAVADANKAIEL- 65 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 45667899999999999887632 124566777788899999999999999887752
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 152 FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 152 ~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
.|+ +...|..+-.+|...|++++|...|++..+.+
T Consensus 66 --------------------~P~---------------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 66 --------------------DPS---------------------LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred --------------------CcC---------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 221 23345555567778889999999998877643
No 134
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.54 E-value=3.1 Score=31.66 Aligned_cols=78 Identities=3% Similarity=-0.034 Sum_probs=61.5
Q ss_pred chHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhh
Q 041786 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRT 123 (260)
Q Consensus 44 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~ 123 (260)
....|.+.|-.+...+.--++...-.|...|. ..+.++++.++....+ +...+-.+|...
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~-------------------l~~~~~~~n~ei 180 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALE-------------------LSNPDDNFNPEI 180 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHH-------------------hcCCCCCCCHHH
Confidence 34489999999988887767777777777776 5678999999888775 234455788999
Q ss_pred HHHHHHHHhccCCHHHHH
Q 041786 124 HTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 124 ~~~li~~~~~~g~~~~a~ 141 (260)
+.+|...|-+.|+.+.|-
T Consensus 181 l~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHhcchhhhh
Confidence 999999999999998874
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=5 Score=32.65 Aligned_cols=88 Identities=8% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-------------HHHHhCCCCCCHhhHH
Q 041786 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------VRMIRKGFVPDKRTHT 125 (260)
Q Consensus 59 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------------~~m~~~g~~p~~~~~~ 125 (260)
|+.....-+++.+..+.+..++.+|++++..-.+++ +.+....+.+-.|| +++- -..|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~--ql~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLG--QLHPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhChHHHHHH
Confidence 333333346667777777778888887777655543 11344444444555 1111 1335444443
Q ss_pred HH-HHHHhccCCHHHHHHHHHHHHh
Q 041786 126 IL-VNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 126 ~l-i~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.- -..+.+.+.+.+|.++...|..
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcC
Confidence 22 3445667778888888887765
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=3.7 Score=32.71 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=48.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-----------------HHHHhCCCCCCHhhHHHHHHHHhc
Q 041786 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-----------------VRMIRKGFVPDKRTHTILVNAWCS 133 (260)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-----------------~~m~~~g~~p~~~~~~~li~~~~~ 133 (260)
+..+.|..+++.|.+.+++|.+. -+..|.+-|-.++ ++|- ....|+..+.|-...++..
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s-~k~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS-EKTPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-cccCCChHHHccHHHHHHH
Confidence 44555556666666666666652 2223333222111 2221 2367888899999999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 041786 134 SGKMREAQEFLQELSDK 150 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~ 150 (260)
.|++++|+.++++...+
T Consensus 220 ~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDK 236 (299)
T ss_pred hcCHHHHHHHHHHHHhc
Confidence 99999999999987764
No 137
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.31 E-value=3.1 Score=33.57 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=70.4
Q ss_pred hhhhhHHHHHHHHcc-cchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 14 YFAAVNHIANIVRHD-IYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
|..++...++.+... +.+...+...+..++....+...++.+.... +-+...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 137 f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 137 FDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 555666666655554 3445666666777766667777777775543 34788999999999999999999999999986
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 041786 93 FNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNA 130 (260)
Q Consensus 93 ~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~ 130 (260)
. .+.+.|+.|...+.......
T Consensus 216 ~-----------------~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 216 T-----------------LAEELGIDPAPELRALYEEI 236 (280)
T ss_pred H-----------------hhhhcCCCccHHHHHHHHHH
Confidence 2 23455777776666655555
No 138
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=0.69 Score=37.61 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=70.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC---CCC--cHHHHHHHHHHH---------HHHHhCCCCCCHh
Q 041786 57 PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN---CQQ--CVLLYNSLHVCF---------VRMIRKGFVPDKR 122 (260)
Q Consensus 57 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~--~~~~~~~li~~~---------~~m~~~g~~p~~~ 122 (260)
..|...+..+...++..-....+++++...+-+++.+- ..| +.++|-.++.-| ..=.+.|+-||..
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchh
Confidence 34666777888888988888899999999888877541 233 345555555333 2224679999999
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+++.+|+.+.+.++..+|-++.-+|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998887766544
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.84 E-value=2.1 Score=30.68 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred HHHHHHHhcccCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH--HHH---------HHHH
Q 041786 47 SMWKTIELMKPDSLS--VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH--VCF---------VRMI 113 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li--~~~---------~~m~ 113 (260)
.+.+.++.+.+..-. ......-.+-..+...|++++|...|+........|+......+- .++ ....
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555665444211 112333344567777777777777777777655222211111111 111 1111
Q ss_pred hC--CCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 114 RK--GFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 114 ~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
+. +-......+...=+.|.+.|+.++|...|+.
T Consensus 109 ~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 109 QQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11 1122334555667789999999999999875
No 140
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.65 E-value=1.5 Score=37.69 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHhccCCHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK----RTHTILVNAWCSSGKMR 138 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~ 138 (260)
+...|+.+-.+|.+.|++++|+..|++..+ +.|+. ..|..+-.+|.+.|+.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------------L~Pd~aeA~~A~yNLAcaya~LGr~d 129 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE------------------------LNPNPDEAQAAYYNKACCHAYREEGK 129 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------------hCCCchHHHHHHHHHHHHHHHcCCHH
Confidence 478899999999999999999999998775 34663 35888888999999999
Q ss_pred HHHHHHHHHHhC
Q 041786 139 EAQEFLQELSDK 150 (260)
Q Consensus 139 ~a~~~~~~m~~~ 150 (260)
+|++.+++..+.
T Consensus 130 EAla~LrrALel 141 (453)
T PLN03098 130 KAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHh
Confidence 999988877664
No 141
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.62 E-value=1.2 Score=36.81 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=56.4
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC----CCC
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGL 193 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~----~~~ 193 (260)
.|+..-|..-|.+++..+++++-.++... +-+++-|-.++.+|.+.|+ ...
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------------------------kKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS-------------------------KKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------------------------CCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 48999999999999999999988765331 1256888888888888887 111
Q ss_pred CcchHHHHHHHHhhhhhccHHHHHHH
Q 041786 194 CADVNTNKISIPAVSKEFMIDEAFRL 219 (260)
Q Consensus 194 ~~~~~t~~~li~~~~~~g~~~~a~~~ 219 (260)
-|. .++.--+..|.++|++.+|-+.
T Consensus 260 I~k-~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 260 IPK-IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHh-CChHHHHHHHHHCCCHHHHHHH
Confidence 222 3346778888999999988665
No 142
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.57 E-value=1.1 Score=27.51 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=46.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
-..|.+.+++++|+++++.+...+ +.+...|...-..+.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-----------------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-----------------------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-----------------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357889999999999999988632 124566667778889999999999999988764
No 143
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.48 E-value=0.35 Score=26.94 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=30.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNK 165 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~ 165 (260)
|-.+|...|+.+.|.+++++....|-.+--.+|..++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 568999999999999999999876654444566666543
No 144
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=91.20 E-value=7.8 Score=32.21 Aligned_cols=133 Identities=10% Similarity=-0.019 Sum_probs=73.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHH---HH-HHH--------HHHHhC--CCCCCH-hhHHHHHHHHhccC
Q 041786 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS---LH-VCF--------VRMIRK--GFVPDK-RTHTILVNAWCSSG 135 (260)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---li-~~~--------~~m~~~--g~~p~~-~~~~~li~~~~~~g 135 (260)
...+...|++++|...+++..+.. +.+...+.. .. ... .+..+. ...|+. .....+-..+...|
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC
Confidence 345566788888888888877653 222333331 11 000 122221 222332 23334455677889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCC---Ccch--HH
Q 041786 136 KMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGL---CADV--NT 199 (260)
Q Consensus 136 ~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~---~~~~--~t 199 (260)
++++|.+.+++..+.. +.+...+..+-..|...|+ ... .++. ..
T Consensus 129 ~~~~A~~~~~~al~~~--------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 129 QYDRAEEAARRALELN--------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred CHHHHHHHHHHHHhhC--------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 9999999988877632 1223445555555555555 111 1222 23
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 200 NKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
|-.+...+...|+.++|..+|++..
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4456677778888888888888764
No 145
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.18 E-value=3.3 Score=33.43 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
++..++..+...|+.+.+...++++.... .-+...|-.+|.+|.+.|+...|++.|+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-----------------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-----------------------PYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-----------------------ccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 44556666666777777777777666421 2478899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHH
Q 041786 146 ELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIET 184 (260)
Q Consensus 146 ~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 184 (260)
.+.+. .+.+.|+.|-..+.......
T Consensus 212 ~l~~~--------------~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 212 QLKKT--------------LAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHH--------------hhhhcCCCccHHHHHHHHHH
Confidence 98863 34466788877777776666
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.02 E-value=1.2 Score=26.75 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=42.9
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
+...+...+|.+.|+...+.. +-+...+..+-..+.+.|++++|...|++..+.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445556669999999998775 225788888899999999999999999998764
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.44 E-value=8 Score=31.04 Aligned_cols=103 Identities=11% Similarity=0.092 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..-+..+.+.|++++|...|+.+.+.- | ++...|+ .+-.+-..|...|++++|...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P----------------~s~~a~~--A~y~LG~~y~~~g~~~~A~~~ 202 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--P----------------DSTYQPN--ANYWLGQLNYNKGKKDDAAYY 202 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--c----------------CCcchHH--HHHHHHHHHHHcCCHHHHHHH
Confidence 4567777777777899999999999988632 1 1112223 334577788899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC-hhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
|+.+.+. -|+ ..... .+-.+...+...|+.++|..+|++
T Consensus 203 f~~vv~~---------------------yP~s~~~~d-------------------Al~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 203 FASVVKN---------------------YPKSPKAAD-------------------AMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHHHH---------------------CCCCcchhH-------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988753 122 11111 122233445577888999999988
Q ss_pred HHHC
Q 041786 223 LVED 226 (260)
Q Consensus 223 m~~~ 226 (260)
+.+.
T Consensus 243 vi~~ 246 (263)
T PRK10803 243 VIKK 246 (263)
T ss_pred HHHH
Confidence 8764
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=90.42 E-value=5.6 Score=29.22 Aligned_cols=68 Identities=10% Similarity=-0.050 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 141 (260)
-....|..+...+...|++++|+..|+....... +......+|..+-..|.+.|++++|+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--------------------~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI--------------------DPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--------------------cchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 3466778888888899999999999998775210 10012347788888899999999999
Q ss_pred HHHHHHHh
Q 041786 142 EFLQELSD 149 (260)
Q Consensus 142 ~~~~~m~~ 149 (260)
..++....
T Consensus 93 ~~~~~Al~ 100 (168)
T CHL00033 93 EYYFQALE 100 (168)
T ss_pred HHHHHHHH
Confidence 99987764
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.35 E-value=16 Score=34.28 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=109.0
Q ss_pred ccchhhhhHHHHHHHHcccchhHH-HHHh--hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 041786 11 KEDYFAAVNHIANIVRHDIYAERT-LNRL--NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVF 87 (260)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 87 (260)
...|..++.....++++.+...-+ ..+. ..+.++..+|..+++.....+.. |..|...+-..|.+.+..++|..+|
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 445566677777777776544322 2222 23455555888888887666554 8889999999999999999999999
Q ss_pred HHhhhcCCCCcHHHHHHHHHHH------HHHHhC------CCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCC
Q 041786 88 NKCTAFNCQQCVLLYNSLHVCF------VRMIRK------GFVPDKRTHTILVNAWCSSG-KMREAQEFLQELSDKGFNP 154 (260)
Q Consensus 88 ~~m~~~~~~~~~~~~~~li~~~------~~m~~~------g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~ 154 (260)
+...... |+......+..|+ .++++. ...-+.+.|.++++-+...- ..+.+.. .|
T Consensus 101 e~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~---~i------- 168 (932)
T KOG2053|consen 101 ERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD---PI------- 168 (932)
T ss_pred HHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc---ch-------
Confidence 9877543 5544444444443 222222 22334555666666554432 2222222 00
Q ss_pred CHHHHHHHHHHHHHCC-CCCChhchHHHHHHHHhcCC--------------CCCCcchHHHHHHHHhhhhhccHHHHHHH
Q 041786 155 PVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGE--------------LGLCADVNTNKISIPAVSKEFMIDEAFRL 219 (260)
Q Consensus 155 ~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~~~--------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~ 219 (260)
-..-|...++.+.+.+ ..-+..-...-+..+...|. .-...+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 0113444555554433 11111111111111222222 11222334444556667777777777777
Q ss_pred HHHHHHCCC
Q 041786 220 LCNLVEDGH 228 (260)
Q Consensus 220 ~~~m~~~~~ 228 (260)
-.++...|.
T Consensus 249 ~~~Ll~k~~ 257 (932)
T KOG2053|consen 249 SSRLLEKGN 257 (932)
T ss_pred HHHHHHhCC
Confidence 777777664
No 150
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=10 Score=36.25 Aligned_cols=110 Identities=14% Similarity=0.214 Sum_probs=65.3
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--- 109 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--- 109 (260)
..+-.+.+...-..+|..+|+... .+....+.||.-. +.++.|.+.-+...+ +..|+.+-.+.
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i---~~ldRA~efAe~~n~------p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI---GSLDRAYEFAERCNE------PAVWSQLAKAQLQG 1117 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh---hhHHHHHHHHHhhCC------hHHHHHHHHHHHhc
Confidence 344444444444557777776643 3455555565533 456666665554432 45666665433
Q ss_pred ---HHHHhCCC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 041786 110 ---VRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV 156 (260)
Q Consensus 110 ---~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 156 (260)
.+..++-+ .-|...|..+|+...+.|.+++-...+...++....|.+
T Consensus 1118 ~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i 1168 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI 1168 (1666)
T ss_pred CchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc
Confidence 12222222 236778999999999999999998888766665444443
No 151
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.80 E-value=1.1 Score=40.69 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHHH
Q 041786 235 GQFDDAFCFFSEM 247 (260)
Q Consensus 235 g~~~~a~~~~~~m 247 (260)
|+...|...|-+.
T Consensus 896 g~lkaae~~flea 908 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEA 908 (1636)
T ss_pred cChhHHHHHHHhh
Confidence 7777777766543
No 152
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.77 E-value=0.88 Score=23.85 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999999844
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.72 E-value=8.8 Score=30.47 Aligned_cols=151 Identities=12% Similarity=0.042 Sum_probs=92.7
Q ss_pred cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCC---
Q 041786 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR-THTILVNAWCSSGKMREAQEFLQELSDKGF--- 152 (260)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--- 152 (260)
..+.++..++++++... +......++.. .|--+.-+...+|+.+.|..+++.+..+=-
T Consensus 25 ~rnseevv~l~~~~~~~------------------~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~ 86 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNY------------------SKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK 86 (289)
T ss_pred ccCHHHHHHHHHHHHHH------------------hhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh
Confidence 35677777777777642 11111444443 233444555566666666666666554320
Q ss_pred ------------CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC------------CCCCcchHHHHHHHHhhh
Q 041786 153 ------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------------LGLCADVNTNKISIPAVS 208 (260)
Q Consensus 153 ------------~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~------------~~~~~~~~t~~~li~~~~ 208 (260)
.....+|.++++.+.+.. +-|..+|--=+...-..|. ..+-.|...|--+-+.|.
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 111116666666665554 3345555544444444554 456678899999999999
Q ss_pred hhccHHHHHHHHHHHHHCCCCcCCCc---------------ccHHHHHHHHHHHH
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKLFPSL---------------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p~~~~---------------g~~~~a~~~~~~m~ 248 (260)
..|++++|--.++++.-. .|.... .+.+.|.+++..-.
T Consensus 166 ~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred hHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999874 465555 55566666665544
No 154
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=89.66 E-value=16 Score=33.28 Aligned_cols=53 Identities=9% Similarity=-0.028 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc---------ccHHHHHHHHHHHHh
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---------g~~~~a~~~~~~m~~ 249 (260)
...|-.-+..-..+..++.|..+|.+....+-.+...+ ++.++|.+++++-..
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 34566666666777788888888877655332222222 777888877766553
No 155
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.56 E-value=5 Score=32.64 Aligned_cols=40 Identities=23% Similarity=0.122 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 67 LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
.+-.-....+.|+.+.|.+-|+...+-+--.....||.-+
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL 186 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL 186 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH
Confidence 3333344456677777777777665543223344555555
No 156
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.47 E-value=0.84 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999999999999999854
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=89.41 E-value=15 Score=32.70 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=82.0
Q ss_pred CCCCCCHhhHHHHHHHHhcc--C---CHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHCCCCCCh-hchHHHHHHHH
Q 041786 115 KGFVPDKRTHTILVNAWCSS--G---KMREAQEFLQELSDKGFNPPVRSAKQM--VNKMIKQGSVPDL-ETFNSLIETIC 186 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~--g---~~~~a~~~~~~m~~~~~~~~~~~a~~l--~~~m~~~g~~p~~-~~~~~li~~~~ 186 (260)
.+...|...|...+.+.... + +.+.|.++|++..+. .|+...|... +......+..|.. ..+..+.....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 45567888999999886443 2 377899999988764 4665433332 2233344444432 22333344333
Q ss_pred hcCCC-CCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHh
Q 041786 187 KSGEL-GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 187 ~~~~~-~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~ 249 (260)
+.-.. ....+...|..+--.+...|++++|...+++..+.+ |+... |+.++|...+++...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 32211 233345677777666667899999999999998876 33221 999999999987653
No 158
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.63 E-value=11 Score=33.27 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=51.0
Q ss_pred HHHHHHHhc-ccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhH
Q 041786 47 SMWKTIELM-KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTH 124 (260)
Q Consensus 47 ~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~ 124 (260)
...++|-++ ...+.++|..+++.|=-.|--.|++++|.+.|+.... +.| |...|
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~------------------------v~Pnd~~lW 467 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ------------------------VKPNDYLLW 467 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh------------------------cCCchHHHH
Confidence 455566555 4446556777777777777778889999999988765 223 34556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 125 TILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
|-|=..+++..+-++|++-|.+..+
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHh
Confidence 6666666666666666666665544
No 159
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.58 E-value=5.8 Score=28.55 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHH-HHHHhCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHhCC---CC---------------
Q 041786 95 CQQCVLLYNSLHVCF-VRMIRKGFVPDK--RTHTILVNAWCSSGKMREAQEFLQELSDKG---FN--------------- 153 (260)
Q Consensus 95 ~~~~~~~~~~li~~~-~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~--------------- 153 (260)
+.++..+|...+.-. ..|.+.+..++. ...|+++.-.+--+++....++++.+..-. +.
T Consensus 10 ~~~nL~~w~~fi~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~Sl 89 (145)
T PF13762_consen 10 VLANLEVWKTFINSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSL 89 (145)
T ss_pred hhhhHHHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHH
Confidence 445566666666433 455666666665 345777777777778888877777663211 00
Q ss_pred ---CC-HHHHHHHHHHHHHCCCCCChhchHHHHHHHHh
Q 041786 154 ---PP-VRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187 (260)
Q Consensus 154 ---~~-~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 187 (260)
+. -..+..+|..|++.+.+++..-|..+|+++.+
T Consensus 90 snSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 90 SNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 00 00445555555555555566666666655544
No 160
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=5.2 Score=35.28 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=67.8
Q ss_pred hhhhcchHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCcHHHHHHHH----HHHHH
Q 041786 39 NLTLISELSMWKTIELMKPDSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF--NCQQCVLLYNSLH----VCFVR 111 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li----~~~~~ 111 (260)
+....+...|.+.|.+-. ++.| |+.+++-+=-..-+.+.+.+|...|+..... .+-+...+|..+. +.+++
T Consensus 390 y~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 334445556666665543 2233 4556666555555566677777666655421 1112222333333 22211
Q ss_pred H----------Hh--CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041786 112 M----------IR--KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166 (260)
Q Consensus 112 m----------~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m 166 (260)
. ++ .-.+.|..++.++--.|...|+++.|.+.|++-.. +.|+...+.+++..+
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 0 00 12345778888888889999999999999996553 344444444444444
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.51 E-value=3.3 Score=33.47 Aligned_cols=91 Identities=14% Similarity=-0.018 Sum_probs=64.8
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhcCC-----------CCCCcc-h
Q 041786 131 WCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGE-----------LGLCAD-V 197 (260)
Q Consensus 131 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~~~-----------~~~~~~-~ 197 (260)
..+.+++.+|.+.|.+..+ +.| |.+-|..--.+|++.|. ..+.|. .
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---------------------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH
Confidence 4567788888888887765 344 55666677899999996 334443 5
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc--ccHHHHHHHH
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--GQFDDAFCFF 244 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--g~~~~a~~~~ 244 (260)
.+|..|=.+|...|++++|.+-|+...+ +.|+..+ .+++.|..-+
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999887654 5566654 3344443333
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=87.84 E-value=9.1 Score=28.24 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 141 (260)
....|..+-..+.+.|++++|...|++..+.+.. .+ ....+..+-..+.+.|++++|.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------------------~~~~~~~~~~la~~~~~~g~~~~A~ 92 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED---------------------PNDRSYILYNMGIIYASNGEHDKAL 92 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---------------------cchHHHHHHHHHHHHHHcCCHHHHH
Confidence 4566788888899999999999999987753210 11 1356778888899999999999
Q ss_pred HHHHHHHh
Q 041786 142 EFLQELSD 149 (260)
Q Consensus 142 ~~~~~m~~ 149 (260)
..+.+..+
T Consensus 93 ~~~~~al~ 100 (172)
T PRK02603 93 EYYHQALE 100 (172)
T ss_pred HHHHHHHH
Confidence 99987765
No 163
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.61 E-value=3.8 Score=27.45 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=30.4
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+....+.|+..+..+.++||.|.+++..|.++|+-.+.
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999998875
No 164
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.24 E-value=3.3 Score=22.70 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (260)
.+|..+-..|.+.|++++|.++|+...+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 357788999999999999999999998753
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.42 E-value=5.3 Score=24.07 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=47.4
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHH
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t 199 (260)
+...|..+=..+.+.|++++|+..|.+..+.+ |+ +...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---------------------p~---------------------~~~~ 39 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---------------------PN---------------------NAEA 39 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---------------------TT---------------------HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CC---------------------CHHH
Confidence 45677788888999999999999999877521 21 3445
Q ss_pred HHHHHHhhhhhc-cHHHHHHHHHHHHH
Q 041786 200 NKISIPAVSKEF-MIDEAFRLLCNLVE 225 (260)
Q Consensus 200 ~~~li~~~~~~g-~~~~a~~~~~~m~~ 225 (260)
|..+-.+|.+.| +.++|...|+...+
T Consensus 40 ~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 40 YYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 666667777778 78888888877654
No 166
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=86.27 E-value=8.2 Score=33.33 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=59.9
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHH
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t 199 (260)
+...|+.+-.+|.+.|++++|...|++..+ +.|+... -...
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---------------------L~Pd~ae------------------A~~A 114 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---------------------LNPNPDE------------------AQAA 114 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------hCCCchH------------------HHHH
Confidence 467888899999999999999999998665 2343210 0134
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc---------ccHHHHHHHHHHHHhcCC
Q 041786 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------GQFDDAFCFFSEMQIKTH 252 (260)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---------g~~~~a~~~~~~m~~~g~ 252 (260)
|..+-.+|.+.|++++|...+++..+.+-...... .+.++..++++++..-|.
T Consensus 115 ~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 115 YYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 56666777777788888888877776421111000 333455566666665554
No 167
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=86.11 E-value=9.4 Score=32.99 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCcHHHHHHHHHHH--------HHHHhCCC--CCCHhhH-HHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-CQQCVLLYNSLHVCF--------VRMIRKGF--VPDKRTH-TILVNAW 131 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~--------~~m~~~g~--~p~~~~~-~~li~~~ 131 (260)
..+|...|....+..-++.|+.+|-+.++.+ +.++++.+++++..+ -.+.+.|+ -||...| +-.+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566777777777777888888888888877 567777888887333 23333332 3555554 4556667
Q ss_pred hccCCHHHHHHHHHH
Q 041786 132 CSSGKMREAQEFLQE 146 (260)
Q Consensus 132 ~~~g~~~~a~~~~~~ 146 (260)
.+-++-+.|..+|+.
T Consensus 477 i~inde~naraLFet 491 (660)
T COG5107 477 IRINDEENARALFET 491 (660)
T ss_pred HHhCcHHHHHHHHHH
Confidence 777777777777773
No 168
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.79 E-value=2 Score=22.82 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=24.1
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45788899999999999999999988764
No 169
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.67 E-value=2.4 Score=22.47 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999998775
No 170
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.58 E-value=20 Score=30.04 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=26.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHHCCCCC
Q 041786 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVR-----SAKQMVNKMIKQGSVP 173 (260)
Q Consensus 128 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----~a~~l~~~m~~~g~~p 173 (260)
-+-|.+++.+=-|-..|+.+...+-.|..- .+-.+|..+......|
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG~f~~l~~~~~~~ 518 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACAGLFRQLANHKTDP 518 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHHHHHHHHHcCCCCC
Confidence 455777777777777777766654333322 4455555555444333
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.21 E-value=2.2 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+|..+-.+|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667889999999999999999998874
No 172
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.19 E-value=24 Score=32.75 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=53.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC-------CChhchHHHHHHHHhcCC-----
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-------PDLETFNSLIETICKSGE----- 190 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~-------p~~~~~~~li~~~~~~~~----- 190 (260)
.++-.|.+|.++|++++|..+-.+.... ......-..--++|.+.|-- .+...=..-|..|-+.|.
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMI 870 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHH
Confidence 4666788899999999998876654321 11111111112233333311 011111234667777775
Q ss_pred ---CCCCcch--HHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 191 ---LGLCADV--NTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 191 ---~~~~~~~--~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
....|+. .|-.-+-.-|-..|++..|+..|-+..
T Consensus 871 rlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 871 RLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 1222332 344455566777888888888775543
No 173
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=27 Score=31.08 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
..+|-++-.-|--.|+..+|++.|.+..
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat 339 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKAT 339 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHh
Confidence 4455555555555566666666666544
No 174
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.13 E-value=20 Score=34.52 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=11.8
Q ss_pred HHHHHHHhccCCHHHHHHHH
Q 041786 125 TILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~ 144 (260)
+.||-+|++.+++.+-++++
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHh
Confidence 45666666666666555543
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=84.92 E-value=13 Score=27.34 Aligned_cols=54 Identities=11% Similarity=-0.058 Sum_probs=41.3
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVF--PQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
+...+...+|.+.|++..+....+. ...|..+...+.+.|++++|...+++..+
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445566699999988765533332 46788888999999999999999998775
No 176
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.75 E-value=28 Score=30.95 Aligned_cols=157 Identities=14% Similarity=0.075 Sum_probs=100.4
Q ss_pred HHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcC-------------------CCCcHHHHHHHH
Q 041786 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-------------------CQQCVLLYNSLH 106 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------------~~~~~~~~~~li 106 (260)
.|..-+.+-. .+.|+ ....-.|--.|...|.-..|+..++.=.... -.++...+..+-
T Consensus 337 ~ai~AL~rcl--~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~ 414 (579)
T KOG1125|consen 337 NAISALRRCL--ELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQ 414 (579)
T ss_pred HHHHHHHHHH--hcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHH
Confidence 4444443333 33454 6777888888999998889988887653321 113344444444
Q ss_pred HHH-HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC-hhchHHHHHH
Q 041786 107 VCF-VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIET 184 (260)
Q Consensus 107 ~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~ 184 (260)
..+ +.-.+.+.++|..++..|=--|--.|.+++|...|+.... ++|+ ...||-|=..
T Consensus 415 ~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---------------------v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 415 ELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---------------------VKPNDYLLWNRLGAT 473 (579)
T ss_pred HHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---------------------cCCchHHHHHHhhHH
Confidence 333 3334556556666777676667778999999999998776 3454 4566666655
Q ss_pred HHhcCC-----------CCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 185 ICKSGE-----------LGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 185 ~~~~~~-----------~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
++...+ ..++|+ ++..-.|--+|...|.+++|...|-+....
T Consensus 474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 555554 456666 344444555788999999998888665543
No 177
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.71 E-value=4.8 Score=28.55 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHhCC-CC-C--------CHHHHHHHHHHHHHCCCCCChhch---HHHHHHHHhcCCCCCCcchHHH
Q 041786 134 SGKMREAQEFLQELSDKG-FN-P--------PVRSAKQMVNKMIKQGSVPDLETF---NSLIETICKSGELGLCADVNTN 200 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~-~~-~--------~~~~a~~l~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~~~~~~t~ 200 (260)
.|.+++..++..+...+. +. . |...+..+|..+..-|-..|.... -.++..|++.| .+....
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n-----~~se~v 89 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN-----KLSEYV 89 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--------HHH
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-----chHHHH
Confidence 456666666666554321 10 0 111555666666666666666544 45688888887 455666
Q ss_pred HHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHhcCC
Q 041786 201 KISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIKTH 252 (260)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~~g~ 252 (260)
...+..+...|+-|...+++.++.+.+ .+++.. |+..++-.++.+.=++|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 777888888888888888888877533 233322 888888888888777775
No 178
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.58 E-value=34 Score=31.68 Aligned_cols=195 Identities=11% Similarity=0.120 Sum_probs=114.2
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---------HHHHhC--CCC--C
Q 041786 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------VRMIRK--GFV--P 119 (260)
Q Consensus 53 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---------~~m~~~--g~~--p 119 (260)
.++....+.-+...|..|.-+..+.|+++.+.+.|++....- .-....|+.+-.|+ -.+.+. +.. |
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 444444555688999999999999999999999999876422 22345566665444 111121 333 3
Q ss_pred CH-hhHHHHHHHHhc-cCCHHHHHHHHHHHHh--CCCC----CCHH-------------------------HHHHHHHHH
Q 041786 120 DK-RTHTILVNAWCS-SGKMREAQEFLQELSD--KGFN----PPVR-------------------------SAKQMVNKM 166 (260)
Q Consensus 120 ~~-~~~~~li~~~~~-~g~~~~a~~~~~~m~~--~~~~----~~~~-------------------------~a~~l~~~m 166 (260)
+. ..+-..-+-|.+ .+.++++++.-.+... .+.. |-.. ++.+.+++-
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 32 222222233333 4566666666555544 1111 1111 666666666
Q ss_pred HHC-CCCCChhchHHHHHHHHhcCC-----------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC-CC-----
Q 041786 167 IKQ-GSVPDLETFNSLIETICKSGE-----------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED-GH----- 228 (260)
Q Consensus 167 ~~~-g~~p~~~~~~~li~~~~~~~~-----------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~~----- 228 (260)
.+. +-.|+..-|-++-.+..|.=. .+-.-+...|..|.-.+...+++.+|..+.+...+. |.
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 554 455666666665544433322 334557788888888888899999999988766533 11
Q ss_pred ----CcCCCcccHHHHHHHHHHHH
Q 041786 229 ----KLFPSLGQFDDAFCFFSEMQ 248 (260)
Q Consensus 229 ----~p~~~~g~~~~a~~~~~~m~ 248 (260)
......++.++|+.....|.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHH
Confidence 11111188888877766665
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.57 E-value=19 Score=28.88 Aligned_cols=86 Identities=10% Similarity=-0.028 Sum_probs=58.3
Q ss_pred cchHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCC
Q 041786 43 ISELSMWKTIELMKPDSLSVF----PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~ 118 (260)
+...+|...|+.+.+.- |+ ...+-.+-..|...|++++|...|..+.+.- | .+..
T Consensus 157 ~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P----------------~s~~- 215 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--P----------------KSPK- 215 (263)
T ss_pred CCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C----------------CCcc-
Confidence 44457888888876542 32 2456778889999999999999999988531 1 0111
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
....+-.+...+...|+.++|..+|+...+.
T Consensus 216 -~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 216 -AADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1222223445566889999999999988764
No 180
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=84.20 E-value=12 Score=26.37 Aligned_cols=43 Identities=14% Similarity=-0.051 Sum_probs=24.0
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG 78 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 78 (260)
++...............++.+.+.+. .+...+|.+|..|++.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD 55 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC
Confidence 33344334444466666666655542 45566677777776653
No 181
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.84 E-value=5.4 Score=26.47 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=33.6
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+....+.|+..+..+.++||-|.+++..|.++|+-.+.
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34557889999999999999999999999999998774
No 182
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.47 E-value=3.8 Score=33.53 Aligned_cols=63 Identities=17% Similarity=0.064 Sum_probs=50.1
Q ss_pred hhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 041786 31 AERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94 (260)
Q Consensus 31 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (260)
+.-+..+++.++... .+.-++..=...|+-||.++++.+|+.+.+.+++.+|.++.-.|...+
T Consensus 103 ~~~~~irlllky~pq-~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 103 TIHTWIRLLLKYDPQ-KAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cHHHHHHHHHccChH-HHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 345566666666555 677777777788999999999999999999999999999887776543
No 183
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.28 E-value=20 Score=28.10 Aligned_cols=149 Identities=16% Similarity=0.006 Sum_probs=89.6
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
-.-+...++...|.+-+++-.+. .|+ ..+|..+...|-+.|+.+.|.+-|+...+..
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------------------- 99 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------------------- 99 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--------------------
Confidence 33455566667888888887665 344 6789999999999999999999999877632
Q ss_pred CCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC---
Q 041786 115 KGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--- 190 (260)
Q Consensus 115 ~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--- 190 (260)
| +..+.|.-=..+|..|.+++|.+-|++.....- ..--..+|..+--+..+.|+
T Consensus 100 ----p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~------------------Y~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 100 ----PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPA------------------YGEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred ----CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCC------------------CCCcchhhhhhHHHHhhcCCchh
Confidence 3 234445555556667777777777766554211 00012233333333333333
Q ss_pred --------CCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCC
Q 041786 191 --------LGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228 (260)
Q Consensus 191 --------~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (260)
....|+ ..+.-.+.....+.|+.-.|...++.....+.
T Consensus 158 A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 158 AEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 111221 23344455566667777777777776665544
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=83.17 E-value=33 Score=30.58 Aligned_cols=125 Identities=11% Similarity=-0.046 Sum_probs=73.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHhhhcCCCCcH-HHHHHHHHHHHH------------------HH
Q 041786 58 DSLSVFPQTLSLIIEEFGKHG-----LIDNAVEVFNKCTAFNCQQCV-LLYNSLHVCFVR------------------MI 113 (260)
Q Consensus 58 ~g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~------------------m~ 113 (260)
.+.+.|...|...+.+..... ....|..+|++..+.. |+. ..|..+..++.. ..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344567888998888755432 3678999999888753 553 344443333311 01
Q ss_pred h---C-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcC
Q 041786 114 R---K-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189 (260)
Q Consensus 114 ~---~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~ 189 (260)
+ . ....+...|.++--.....|++++|...+++...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---------------------------------------- 448 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---------------------------------------- 448 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------------------------
Confidence 1 0 1112233444443333334566666665555443
Q ss_pred CCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 190 ELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 190 ~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
..|+...|..+-..+...|+.++|...|++....+
T Consensus 449 ---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 449 ---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556667777788888899999999998876543
No 185
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=83.11 E-value=38 Score=31.18 Aligned_cols=166 Identities=13% Similarity=-0.042 Sum_probs=105.5
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-----CC-CCcHHHHHHHHHHH
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF-----NC-QQCVLLYNSLHVCF 109 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~~~~~~li~~~ 109 (260)
..+|...+....|..+.....+ -+|+...|..+-+.......+++|.++++....+ |. .-+..-|.....+.
T Consensus 431 i~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHH
Confidence 3344445544467777666555 3689999999999999999999999999986643 11 01112233333222
Q ss_pred -HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC-hhchHHHHHHHHh
Q 041786 110 -VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICK 187 (260)
Q Consensus 110 -~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~ 187 (260)
..|..+.+ -..+|-.+=.+..+++++..|.+.|..-.. ..|| ...||.+-.+|.+
T Consensus 509 e~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvt---------------------L~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 509 ERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVT---------------------LEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred HHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhh---------------------cCCCchhhhhhhhHHHHH
Confidence 22222222 223444444455667777777777776554 3455 5689999888888
Q ss_pred cCC------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 188 SGE------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 188 ~~~------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
.+. .--.-+...|-.-+....+.|.+++|.+.+.++.+.
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 887 111334455666677788999999999999888654
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=83.06 E-value=13 Score=25.81 Aligned_cols=87 Identities=20% Similarity=0.119 Sum_probs=55.7
Q ss_pred hcchHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC
Q 041786 42 LISELSMWKTIELMKPDSLSVF--PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP 119 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p 119 (260)
.+...+|..+++.-...|+... ...+-.+-..+...|++++|..+|++..... |+ .....
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~----------------~~~~~ 75 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PD----------------DELNA 75 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC----------------ccccH
Confidence 4556688999988888777654 3455666778888899999999998776421 10 01111
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
....+ +--++...|+.++|.+.+-...
T Consensus 76 ~l~~f--~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 76 ALRVF--LALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHH--HHHHHHHCCCHHHHHHHHHHHH
Confidence 11222 2336677788888887765443
No 187
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.37 E-value=26 Score=28.72 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=21.3
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhc--cCC----HHHHHHHHHHHHhC
Q 041786 110 VRMIRKGFVPDKRTHTILVNAWCS--SGK----MREAQEFLQELSDK 150 (260)
Q Consensus 110 ~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~ 150 (260)
+.|.+.|+.-+..+|-+..-.... ..+ ..+|.++|+.|++.
T Consensus 86 ~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 86 EKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 455666666666666543222222 222 34566667766653
No 188
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=82.34 E-value=5.3 Score=28.28 Aligned_cols=81 Identities=14% Similarity=0.028 Sum_probs=47.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCC------Ccc
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL------CAD 196 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~------~~~ 196 (260)
....+|..+...+.......+++.+...+ ..+...++.++..|++.+.... ..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--------------------~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~ 68 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN--------------------SENPALQTKLIELYAKYDPQKEIERLDNKSN 68 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC--------------------ccchhHHHHHHHHHHHHCHHHHHHHHHhccc
Confidence 34567777777777888887777766532 2455677777777777654100 122
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
......++..|.+.+.++++..++..+
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 222334556666666666666666554
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=82.30 E-value=7.5 Score=32.18 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=73.6
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----- 190 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~----- 190 (260)
+......+.+..|.-+...|+...|..+-.+.+ .|+..-|...|.+|+..++
T Consensus 172 ~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----------------------v~dkrfw~lki~aLa~~~~w~eL~ 228 (319)
T PF04840_consen 172 NTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK-----------------------VPDKRFWWLKIKALAENKDWDELE 228 (319)
T ss_pred ccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC-----------------------CcHHHHHHHHHHHHHhcCCHHHHH
Confidence 333344566777777888888888877655443 3889999999999999998
Q ss_pred --CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC-CCCcCCCcccHHHHHHH
Q 041786 191 --LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED-GHKLFPSLGQFDDAFCF 243 (260)
Q Consensus 191 --~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~g~~~~a~~~ 243 (260)
.+.+-.+.-|-..+..|.+.|...+|......+... .+..+...|.+.+|...
T Consensus 229 ~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 229 KFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHCCCHHHHHHH
Confidence 333455688999999999999999999888763210 11111122777777655
No 190
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=82.12 E-value=49 Score=31.71 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCcHHHHHHHHHHH-----------------------------HHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN-CQQCVLLYNSLHVCF-----------------------------VRM 112 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~-----------------------------~~m 112 (260)
+...|..|+..|...+++++|.++.+.-.+.. -.+....+..++... ..|
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 35667777777777777777777777544432 122223333332111 111
Q ss_pred HhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCC
Q 041786 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192 (260)
Q Consensus 113 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 192 (260)
.+.+ -+...+-.+-.+|-+.|+.++|.++++++.+.+ .-|+...|.+-..|+.. .
T Consensus 110 ~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------------------~~n~~aLNn~AY~~ae~---d 164 (906)
T PRK14720 110 LLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------------------RDNPEIVKKLATSYEEE---D 164 (906)
T ss_pred Hhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------cccHHHHHHHHHHHHHh---h
Confidence 1111 111334445555666677777777777766542 23566777777777766 2
Q ss_pred CCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 193 ~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
+.--...+.-.+..|....++..+..+|.++....
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcC
Confidence 33345556666777888888888888888887654
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=81.91 E-value=26 Score=28.36 Aligned_cols=168 Identities=10% Similarity=-0.006 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc--HHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC--VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
..|.-.-..|...+++++|.+.|........+.+ ...-..+..+..-..+....--...|.-.+..|...|++..|-.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4556666667777778887777776543221111 11111111111111222111124567778888888898888887
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHH
Q 041786 143 FLQELSDK--GFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220 (260)
Q Consensus 143 ~~~~m~~~--~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~ 220 (260)
++..+-+. ...++...|.+.|..-. ..|...|. ..--..++.-+...+.+.|++++|..+|
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~---------------~~y~~e~~--~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAA---------------ELYEQEGS--PHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHH---------------HHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHHHHCCC--hhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77766432 11135555555554432 22222220 0011234445556677777777777777
Q ss_pred HHHHHCCCCcCCC-c----------------ccHHHHHHHHHHHHh
Q 041786 221 CNLVEDGHKLFPS-L----------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 221 ~~m~~~~~~p~~~-~----------------g~~~~a~~~~~~m~~ 249 (260)
++........... . |+...|.+.|++...
T Consensus 179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7766543322211 1 666677777766653
No 192
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=81.90 E-value=50 Score=31.66 Aligned_cols=136 Identities=12% Similarity=0.101 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
..+-.+..+|-+.|+.++|..+++++.+.. .-|....|-+-..|+.. ++++|.+++
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----------------------~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-----------------------RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------------cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 345556666667788888888888777643 23556666677777777 777777777
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 145 QELSDKGF-NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 145 ~~m~~~~~-~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
.+....-+ .-....+.+++..+..... -|...+..++.....+ .+...-+.++-.|-..|-...+++++..+|+.+
T Consensus 173 ~KAV~~~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~--~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 173 KKAIYRFIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGH--REFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhh--hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 66544322 1133356666666655432 1333334444433332 235566778888889999999999999999998
Q ss_pred HHCC
Q 041786 224 VEDG 227 (260)
Q Consensus 224 ~~~~ 227 (260)
.+..
T Consensus 250 L~~~ 253 (906)
T PRK14720 250 LEHD 253 (906)
T ss_pred HhcC
Confidence 8753
No 193
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.63 E-value=13 Score=24.75 Aligned_cols=69 Identities=9% Similarity=0.063 Sum_probs=49.9
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCcHHHHHHHHH-HHHHHHhCCC
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSLHV-CFVRMIRKGF 117 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~-~~~~m~~~g~ 117 (260)
+..+-+..+....+.|+.....+-+.+|.|..++..|.++|+-.+.+ |. ....|..++. ....+.+.|+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqeikp~l~ELGI 95 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEIKPTLKELGI 95 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHHhHHHHHHCC
Confidence 45555566667788999999999999999999999999999988843 32 3446666662 2234444454
No 194
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.53 E-value=25 Score=30.56 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCC-CCCChhchHHHHHHHHhcCC----------CCCCcchHHHH-HHHHhhhhhccHHHHHHHHHHH
Q 041786 158 SAKQMVNKMIKQG-SVPDLETFNSLIETICKSGE----------LGLCADVNTNK-ISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 158 ~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~~~----------~~~~~~~~t~~-~li~~~~~~g~~~~a~~~~~~m 223 (260)
.|..+|....+.| +.+++..++++|.-++.... ...-||.-.|. -.+.-+.+.++-+.|..+|+.-
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 3344444444555 56788889999988887765 22335554443 3455566778888888888743
No 195
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.58 E-value=1.6 Score=30.76 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=19.3
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEF 74 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~ 74 (260)
+|..+|..|.++|-.||. |+.|+...
T Consensus 113 DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 113 DAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred cHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 788888888888877775 77776553
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=80.42 E-value=6.9 Score=23.82 Aligned_cols=55 Identities=11% Similarity=-0.027 Sum_probs=42.3
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (260)
+........|.++++.+..... .+...|...-..+.+.|++++|...|+...+.+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3444455588888888876642 266777888899999999999999999988754
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=80.31 E-value=17 Score=25.26 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=42.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD--KRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
-.++-..|+.++|+.+|++....|.. .. ...+-.+-..+...|++++|..++++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLS----------------------GADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC----------------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566779999999999988765432 22 2345556778889999999999999776
Q ss_pred h
Q 041786 149 D 149 (260)
Q Consensus 149 ~ 149 (260)
.
T Consensus 66 ~ 66 (120)
T PF12688_consen 66 E 66 (120)
T ss_pred H
Confidence 5
No 198
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.62 E-value=5.2 Score=22.23 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.6
Q ss_pred HHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 203 SIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
|-.+|...|+.+.|..++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4578999999999999999998654
No 199
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.38 E-value=7.9 Score=21.88 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
+-...+.|-+.++..+++.|.+.|+..+...+..++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 444556777888888888888888877777777665
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.80 E-value=56 Score=30.32 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=81.1
Q ss_pred HHHHHHHhcc-cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHH
Q 041786 47 SMWKTIELMK-PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125 (260)
Q Consensus 47 ~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~ 125 (260)
.-+++.+.+. +.|....--+.+--+.-+...|+-.+|.++-.+.+- ||...|.
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki--------------------------pdKr~~w 719 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI--------------------------PDKRLWW 719 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC--------------------------cchhhHH
Confidence 4445555553 334444445566666677778888888877776663 8888888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC----CCCCcchHHHH
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----LGLCADVNTNK 201 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~----~~~~~~~~t~~ 201 (260)
.=+.+++..+++++-+++-+.++ .+.-|--.+.+|.+.|+ ....|-+.-+.
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk-------------------------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK-------------------------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC-------------------------CCCCchhHHHHHHhcccHHHHhhhhhccCChH
Confidence 88888888888888776544322 36667777888888887 23333333333
Q ss_pred HHHHhhhhhccHHHHHHH
Q 041786 202 ISIPAVSKEFMIDEAFRL 219 (260)
Q Consensus 202 ~li~~~~~~g~~~~a~~~ 219 (260)
-...+|.+.|++.+|-++
T Consensus 775 ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 775 EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHHHHHhccHHHHHHH
Confidence 567788888888887654
No 201
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=78.28 E-value=8.2 Score=26.32 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=35.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
++|+...+|...++|++|.+.|.++| ..+...|..+-..+.+.|+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kGv 110 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKGV 110 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhH
Confidence 46777889999999999999999988 4455567777666666664
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=77.70 E-value=57 Score=29.88 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=27.7
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------------------ccHHHHHHHHHHHHhc
Q 041786 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----------------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------------------g~~~~a~~~~~~m~~~ 250 (260)
.++..+...+++.+|+++-+...+ ..|+... |+-.||..+++++...
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 455556666666666666554332 3344433 7777777777776543
No 203
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=77.53 E-value=25 Score=25.71 Aligned_cols=97 Identities=12% Similarity=-0.082 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHhccCCHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTI-LVNAWCSSGKMREAQE 142 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~ 142 (260)
....-.+-..+...|++++|..+|+.+.. +.|....|.- |=-.|-..|++++|+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------------YDAWSFDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------hCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445566677789999999999998775 3465555544 4444455789999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
.|......+ || |...+-.+-.++...|+.+.|.+-|+.
T Consensus 91 aY~~A~~L~---------------------~d---------------------dp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 91 AYGRAAQIK---------------------ID---------------------APQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHhcC---------------------CC---------------------CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 998766521 11 233444445566667777777777776
Q ss_pred HHHC
Q 041786 223 LVED 226 (260)
Q Consensus 223 m~~~ 226 (260)
....
T Consensus 129 Ai~~ 132 (157)
T PRK15363 129 VVRI 132 (157)
T ss_pred HHHH
Confidence 6544
No 204
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.39 E-value=52 Score=28.71 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCC----CcHHHHHHHH
Q 041786 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQ----QCVLLYNSLH 106 (260)
Q Consensus 68 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~li 106 (260)
+..++++...|++.+++.+++.|...=++ -+..+||.++
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 56677888888888888888887765443 5677777733
No 205
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=76.34 E-value=72 Score=30.30 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=10.5
Q ss_pred ccCCHHHHHHHHHHHH
Q 041786 133 SSGKMREAQEFLQELS 148 (260)
Q Consensus 133 ~~g~~~~a~~~~~~m~ 148 (260)
-.|++|.|+.+|+..+
T Consensus 924 S~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAK 939 (1416)
T ss_pred cccchHHHHHHHHHhh
Confidence 3577777777776544
No 206
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.33 E-value=5.5 Score=33.05 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=49.3
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhcCC-----CCCCcchHHHHH
Q 041786 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGE-----LGLCADVNTNKI 202 (260)
Q Consensus 129 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~~~-----~~~~~~~~t~~~ 202 (260)
+-|.+.|.+++|+++|..-.. ..| |++++..-..+|.+... ..+..-+..-..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---------------------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---------------------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---------------------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 358899999999999986443 346 88888888888888776 222222333345
Q ss_pred HHHhhhhhccHHHHHHHHHHHH
Q 041786 203 SIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~ 224 (260)
.+.+|++.+.-..+.....+.+
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 5677777766555555544444
No 207
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.25 E-value=22 Score=23.92 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCcHHHHHHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSLH 106 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li 106 (260)
+..+-+..+....+.|++.+..+.+.+|.|..++..|.++|+-++.+ |-+ ...|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHH
Confidence 44455556667788999999999999999999999999999999864 322 22666666
No 208
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.02 E-value=8.9 Score=19.23 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
..|..+-..|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 56888889999999999999999988763
No 209
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.38 E-value=6.7 Score=18.67 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFN 88 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~ 88 (260)
....+-..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567788999999999999876
No 210
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.87 E-value=28 Score=24.38 Aligned_cols=79 Identities=8% Similarity=0.085 Sum_probs=50.6
Q ss_pred ccchhhhhHHHHHHHHccc--chhHHHHHhhhhhcchH-HHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 041786 11 KEDYFAAVNHIANIVRHDI--YAERTLNRLNLTLISEL-SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEV 86 (260)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~ 86 (260)
......++++..+....+. .-...+.++...+.... ++.++|..|..+|+-.. +.-|..-...+.+.|++.+|.++
T Consensus 42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I 121 (126)
T PF08311_consen 42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEI 121 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444556666555554432 22334444433333221 89999999988777544 67788888999999999999999
Q ss_pred HHH
Q 041786 87 FNK 89 (260)
Q Consensus 87 ~~~ 89 (260)
|+.
T Consensus 122 ~~~ 124 (126)
T PF08311_consen 122 YQL 124 (126)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 211
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=71.76 E-value=91 Score=29.67 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=34.7
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
++..++...|.+-+..++ +..+|..|...|.+-++++-|.-.+..|..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 444555556666555544 446799999999999999988888888774
No 212
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=71.76 E-value=38 Score=25.09 Aligned_cols=89 Identities=11% Similarity=0.204 Sum_probs=56.9
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-----------HHHHhCCCC
Q 041786 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-----------VRMIRKGFV 118 (260)
Q Consensus 50 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-----------~~m~~~g~~ 118 (260)
+.+.-+.+.|++|+...|..+|..+.+.|+.... .++...++-+|+......+... -+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH---
Confidence 4445556789999999999999999999987655 5555567778877766665222 112211
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
=...+..++..+...|++-+|.++...
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 011344555566666666666665544
No 213
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=71.54 E-value=1e+02 Score=29.90 Aligned_cols=132 Identities=12% Similarity=0.035 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHcccch---hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 16 AAVNHIANIVRHDIYA---ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 16 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
..++.+.+.++.+... ...+...+-.......|.+.|+.-.+.. .-+...+..+.+-|+...+++.|..+.-..-+
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3455555656666443 3344444555555558888888765443 13678888999999999999999888322111
Q ss_pred cCCCCcHHHHHHHHHHH------------HHHHh-CCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 93 FNCQQCVLLYNSLHVCF------------VRMIR-KGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 93 ~~~~~~~~~~~~li~~~------------~~m~~-~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.-+--...+|.+-.+. ...+. ..+.| |...|..+..+|.++|....|..+|.+...
T Consensus 555 -ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 555 -KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred -hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 1111223344433111 12221 13445 567888999999999999999999986654
No 214
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=71.48 E-value=37 Score=24.85 Aligned_cols=87 Identities=6% Similarity=-0.021 Sum_probs=63.2
Q ss_pred hhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC
Q 041786 40 LTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP 119 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p 119 (260)
...++..+|.++|+.+..... -+..-|-.|--.+-..|++.+|+..|....... .-
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-----------------------~d 101 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-----------------------ID 101 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------------------CC
Confidence 345566699999999876532 244555667777778899999999999877532 12
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
|...+-.+=.++.+.|+.+.|++.|+.....
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455556677888999999999999976543
No 215
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.29 E-value=29 Score=23.55 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHC--CCCcCCCc-ccHHHHHHHHHHHH
Q 041786 199 TNKISIPAVSKEFMIDEAFRLLCNLVED--GHKLFPSL-GQFDDAFCFFSEMQ 248 (260)
Q Consensus 199 t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~-g~~~~a~~~~~~m~ 248 (260)
-|..|+.-|-..|..++|.+++.++.+. +-..+... |....++++++.+.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~ 93 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLG 93 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCC
Confidence 4889999999999999999999998873 22222222 44344466666653
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=71.14 E-value=44 Score=29.15 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---HHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---VRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 140 (260)
....+.++..+-+.|..+.|+++..+-. .-|..-+.|. .......-..+...|..|=+...+.|+++-|
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD--------HRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHH
Confidence 5668899999999999999998876532 2233333222 1122223345788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-------CCCCcchHHHHHHHHhhhhhccH
Q 041786 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------LGLCADVNTNKISIPAVSKEFMI 213 (260)
Q Consensus 141 ~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-------~~~~~~~~t~~~li~~~~~~g~~ 213 (260)
++.|.+... |..|+--|.-.|+ ........-+|..+.++.-.|++
T Consensus 367 e~c~~k~~d----------------------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 367 EECYQKAKD----------------------------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDV 418 (443)
T ss_dssp HHHHHHCT-----------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-H
T ss_pred HHHHHhhcC----------------------------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCH
Confidence 999986553 2333333333333 00011111366666677777888
Q ss_pred HHHHHHHHH
Q 041786 214 DEAFRLLCN 222 (260)
Q Consensus 214 ~~a~~~~~~ 222 (260)
++..+++.+
T Consensus 419 ~~cv~lL~~ 427 (443)
T PF04053_consen 419 EECVDLLIE 427 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877777654
No 217
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.45 E-value=12 Score=18.68 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
.+|..+-..|.+.|+.++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4677788899999999999999998765
No 218
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=69.51 E-value=12 Score=18.50 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
..|..+-..|.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677788999999999999999987753
No 219
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=69.32 E-value=41 Score=24.50 Aligned_cols=55 Identities=9% Similarity=-0.151 Sum_probs=40.2
Q ss_pred hhhhcchHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 39 NLTLISELSMWKTIELMKPDSLSV--FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
+...+...+|+..|+........+ ...+|..+-..|.+.|+.++|+..++.....
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455568888888875443222 2357888889999999999999999987753
No 220
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.31 E-value=75 Score=27.47 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=23.5
Q ss_pred CCCCc-chHHHHHHHHhhhhhccHHHHHHHH
Q 041786 191 LGLCA-DVNTNKISIPAVSKEFMIDEAFRLL 220 (260)
Q Consensus 191 ~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~ 220 (260)
....| +...|.-|+.+|...|++.+|..+-
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 34554 6789999999999999999975443
No 221
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.33 E-value=92 Score=28.13 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=57.3
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHH-H-H--HH------H-HHHh-
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL-H-V--CF------V-RMIR- 114 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-i-~--~~------~-~m~~- 114 (260)
+|.+....+...+ +-+...+..=+-+..+.+.+++|+.+.+.=. -..+++.. + . |. + .+..
T Consensus 30 ~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 30 EAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred HHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 6667777766555 3345566666667778888888885554311 11222222 1 2 22 1 1111
Q ss_pred CCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 041786 115 KGFVPDKR-THTILVNAWCSSGKMREAQEFLQELSDKGF 152 (260)
Q Consensus 115 ~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 152 (260)
.|..++.. +-..=-..|.|.|++++|..+|+.+.+.+.
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 15555443 443444567889999999999999876653
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.21 E-value=6.4 Score=20.26 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAV 84 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~ 84 (260)
+...|+.+-..|.+.|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5889999999999999999986
No 223
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.74 E-value=12 Score=30.54 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=36.6
Q ss_pred CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHH
Q 041786 59 SLSVFPQTL-SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104 (260)
Q Consensus 59 g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 104 (260)
.+.|+.+.| |.-|....+.|++++|++++++..+.|+.--..+|-.
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 455676654 7999999999999999999999999887655555433
No 224
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=66.73 E-value=72 Score=26.30 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 141 (260)
++...|.++... +.++.+++....+.....- ...=.......|........+...+.+.+
T Consensus 29 ~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~------------------~~~l~~~~~~s~~~~y~~l~~lq~L~Ele 88 (352)
T PF02259_consen 29 PEYSFYRALLAL--RQGDYDEAKKYIEKARQLL------------------LDELSALSSESYQRAYPSLVKLQQLVELE 88 (352)
T ss_pred hhHHHHHHHHHH--hCccHHHHHHHHHHHHHHH------------------HHHHHHhhhhhHHHHHHHHHHHhHHHHHH
Confidence 455566666555 7788888888887776521 11000012223333333333333344444
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC--CCCCcchHHHHHHHHhhhhhccHHHHHH
Q 041786 142 EFLQELSDKGF-NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--LGLCADVNTNKISIPAVSKEFMIDEAFR 218 (260)
Q Consensus 142 ~~~~~m~~~~~-~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~~~~~~t~~~li~~~~~~g~~~~a~~ 218 (260)
++.+-...... ..+.......++.=. .+..++..+|..++.-=.-.=. ........+|..+...+.+.|+++.|..
T Consensus 89 e~~~~~~~~~~~~~~~~~l~~~W~~Rl-~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~ 167 (352)
T PF02259_consen 89 EIIELKSNLSQNPQDLKSLLKRWRSRL-PNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALS 167 (352)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44433211110 111112222222211 1345667677666544221111 1233456788899999999999999999
Q ss_pred HHHHHHHCCCC-----cCCCc---------ccHHHHHHHHHHHHh
Q 041786 219 LLCNLVEDGHK-----LFPSL---------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 219 ~~~~m~~~~~~-----p~~~~---------g~~~~a~~~~~~m~~ 249 (260)
.+..+...+.. |.... |+.++|+..+++...
T Consensus 168 ~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 168 ALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998875422 22222 888999999988876
No 225
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.60 E-value=18 Score=23.04 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~ 151 (260)
++++.+.+|.--++|+++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56788899999999999999999887
No 226
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.51 E-value=3.9 Score=28.90 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHHHHhcCCCCCC
Q 041786 235 GQFDDAFCFFSEMQIKTHPPNR 256 (260)
Q Consensus 235 g~~~~a~~~~~~m~~~g~~p~~ 256 (260)
|.-.+|..+|+.|..+|-.||.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc
Confidence 6666777777777777777763
No 227
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=66.30 E-value=51 Score=24.43 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHCCCCCChhchHH
Q 041786 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR-SAKQMVNKMIKQGSVPDLETFNS 180 (260)
Q Consensus 102 ~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~a~~l~~~m~~~g~~p~~~~~~~ 180 (260)
.+.++...+.+.+.++.|+...|..+|+.+.+.|.+....++ ...++.+|.. -|..++.. .. -++.++-.
T Consensus 10 i~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~-~~----~~~~~~Ql 80 (167)
T PF07035_consen 10 IAVLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL-GN----QYPPAYQL 80 (167)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh-Hc----cChHHHHH
Confidence 333444446677889999999999999999999987776554 4445544443 33333222 11 13445556
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 181 LIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 181 li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
=++.+.|.+ ..+..+++.+...|++-+|.++.+..
T Consensus 81 ~lDMLkRL~--------~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 81 GLDMLKRLG--------TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHhh--------hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 666666655 24667778888899999998887664
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.76 E-value=71 Score=25.85 Aligned_cols=59 Identities=15% Similarity=-0.071 Sum_probs=41.4
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 48 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
..+++.+..++.-+-++.....|...-.+.|+.+.|...|+...+..-+.+-.+++.++
T Consensus 196 S~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 196 SVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred hHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 34444455444444566677778888889999999999999888766666666666665
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=64.99 E-value=99 Score=27.25 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=15.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.+--+.-.+.-..++++|.+.|..+.+
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 334444455555666666666666554
No 230
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.97 E-value=30 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 399999999999999999999998876
No 231
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.07 E-value=83 Score=25.74 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-HhhH
Q 041786 47 SMWKTIELMKPDSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-KRTH 124 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-~~~~ 124 (260)
+|++.+.+-.+. .| |..-|.-=..+|++.|+.+.|++=.+.... +.|. ...|
T Consensus 99 eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~------------------------iDp~yskay 152 (304)
T KOG0553|consen 99 EAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS------------------------IDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh------------------------cChHHHHHH
Confidence 555555554433 23 334444445666666666666554443332 3344 4688
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH
Q 041786 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVR 157 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 157 (260)
..|=.+|...|++++|.+.|++-.. +.|+..
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne 183 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALE--LDPDNE 183 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhc--cCCCcH
Confidence 8888999999999999999887654 344444
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=62.96 E-value=80 Score=25.48 Aligned_cols=59 Identities=8% Similarity=0.052 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhcCCCCC
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIKTHPPN 255 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~g~~p~ 255 (260)
...+-.-|..+.+.++.+.+.+++.+|...-..+.... .....|...+..+....+.|.
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 33444445555667888888888888887643333322 334455566665555544443
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.74 E-value=54 Score=23.47 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=27.6
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 152 (260)
.++....-.+-.||.+.|+..++.+++.+.-++|+
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 46777777888999999999999999999888775
No 234
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.31 E-value=85 Score=25.58 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCcHHHHHHHHHHH------------HHHHhC--CCCCC-HhhHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF-NCQQCVLLYNSLHVCF------------VRMIRK--GFVPD-KRTHT 125 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~------------~~m~~~--g~~p~-~~~~~ 125 (260)
-|...|-.|=..|.+.|+.+.|..-|.+..+. |-.| ..+..+-... +.|.++ ...|+ ...-.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 37899999999999999999999999987764 3333 3333322111 444443 34554 34445
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~ 151 (260)
.|--++...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 55667888999999999999998753
No 235
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=62.01 E-value=16 Score=17.81 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 69 LIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
.+-.++.+.|+.++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456777889999999999998764
No 236
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=61.95 E-value=39 Score=25.06 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=37.2
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~ 172 (260)
+...|+.++..-. +++..+...+..=.|.++++.+.+.+...+...+.+.++.+.+.|+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445665554433 34444444555667888888888777666666666666666666653
No 237
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=61.37 E-value=5.3 Score=28.38 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=32.4
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN 88 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (260)
+..+..........+.++.+.+.+..-+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33333333444555666666655545567778888888888877677766666
No 238
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.26 E-value=30 Score=20.04 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=28.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMI 167 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~ 167 (260)
+--++.+.|+++.|.+..+.+.+. .|+...|..+...+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHHHHH
Confidence 445788999999999999988863 677777776665543
No 239
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.11 E-value=15 Score=22.09 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 125 TILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
--+|.+|...|++++|.+..+++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3579999999999999999887764
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=60.85 E-value=45 Score=24.90 Aligned_cols=65 Identities=8% Similarity=0.186 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...+..+...|.+.|+.+.|++.|..+.+....+ ..-...+-.+|......+++..+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--------------------~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSP--------------------GHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--------------------HHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4578889999999999999999999988743222 12233445566666666777766666
Q ss_pred HHHHH
Q 041786 144 LQELS 148 (260)
Q Consensus 144 ~~~m~ 148 (260)
..+..
T Consensus 96 i~ka~ 100 (177)
T PF10602_consen 96 IEKAE 100 (177)
T ss_pred HHHHH
Confidence 65544
No 241
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.75 E-value=13 Score=30.27 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=32.2
Q ss_pred CCCcchHH-HHHHHHhhhhhccHHHHHHHHHHHHHCCCC
Q 041786 192 GLCADVNT-NKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229 (260)
Q Consensus 192 ~~~~~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 229 (260)
.+.|+..+ |+.-|....+.|++++|.++++|..+.|+.
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34466554 789999999999999999999999999864
No 242
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.36 E-value=71 Score=24.08 Aligned_cols=119 Identities=11% Similarity=0.065 Sum_probs=65.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHHCCCCCChh-chHHH
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN-----------------PPVRSAKQMVNKMIKQGSVPDLE-TFNSL 181 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------------~~~~~a~~l~~~m~~~g~~p~~~-~~~~l 181 (260)
....|...++ .++.+..++|+.-|.++.+.|.. .+...|...|++.-...-.|-.. -..-|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445544444 34566677777777777776653 23336666677765554444332 22233
Q ss_pred HHHHHhcCC---------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHH
Q 041786 182 IETICKSGE---------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDD 239 (260)
Q Consensus 182 i~~~~~~~~---------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~ 239 (260)
=.+|.-..+ .+.......-..|--+--+.|++.+|...|+.+.+....|.....+..-
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ 209 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence 333333332 1111112223345555678999999999999998866666554444333
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.32 E-value=1.3e+02 Score=26.79 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
.|-.++.+.|+.++|.+.|.+|.+.. ...-+..+...||.++...+..++++.++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~---------------------p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF---------------------PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC---------------------CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 45556667899999999999987521 111133466779999999999999999988765
Q ss_pred h
Q 041786 149 D 149 (260)
Q Consensus 149 ~ 149 (260)
+
T Consensus 323 D 323 (539)
T PF04184_consen 323 D 323 (539)
T ss_pred c
Confidence 3
No 244
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.31 E-value=77 Score=25.85 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=23.0
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
+..-|...|...|+.-.+.|+..-...+.+
T Consensus 233 ~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 233 VPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 445578889999999999998877665544
No 245
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.22 E-value=69 Score=24.09 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=30.6
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
...|+..+|..++.++...|+.++|.+..+++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3569999999999999999999999999988765
No 246
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=59.05 E-value=40 Score=21.85 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 50 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
++|+.-...|+..|..+|-.+++...-+-.++...+++..|-..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777788899999999999999998888899999999888753
No 247
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.79 E-value=17 Score=21.82 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=20.6
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 200 NKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
--.+|.||...|++++|.+..+++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33678999999999999999888764
No 248
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.96 E-value=32 Score=24.74 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=39.3
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~ 172 (260)
+.+.|++++..= -.+++.+.+.++.-.|.++++++.+.+...+...+.+.++.+.+.|+.
T Consensus 12 lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 12 LKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 344555554432 346777777777788888888888777666666666666666666653
No 249
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=56.88 E-value=36 Score=23.07 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=20.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g 170 (260)
++..+...+..-.|.++++.+.+.+...+...+.+.++.+.+.|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33444444444455555555555444444444444444444444
No 250
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=56.37 E-value=1.9e+02 Score=27.68 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=46.4
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEF--GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~ 124 (260)
.|++..+.+.++ .|+. .|..++.++ .|.|+.++|..+++.....+.. |..|.
T Consensus 27 kal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-----------------------D~~tL 80 (932)
T KOG2053|consen 27 KALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-----------------------DDLTL 80 (932)
T ss_pred HHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-----------------------chHHH
Confidence 677777776554 2443 455555554 4678999999888876643321 44555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 041786 125 TILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
..+-..|...|..++|..+|++..
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 555555555555666665555544
No 251
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=56.16 E-value=32 Score=24.08 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCCcCCCcccHHHHHHHH--HHHHhcCCCCCCC
Q 041786 217 FRLLCNLVEDGHKLFPSLGQFDDAFCFF--SEMQIKTHPPNRP 257 (260)
Q Consensus 217 ~~~~~~m~~~~~~p~~~~g~~~~a~~~~--~~m~~~g~~p~~~ 257 (260)
.++.+-|++.++ .+|+|..++ +.+.++||-||..
T Consensus 88 ~EI~~IM~~~~v-------~FDeARliy~~~~f~~NgI~pdG~ 123 (128)
T PF09435_consen 88 REIRRIMKRRRV-------NFDEARLIYTERRFKKNGIGPDGR 123 (128)
T ss_pred HHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCCCCCC
Confidence 667777788775 699999998 4667789999853
No 252
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.08 E-value=43 Score=24.35 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=28.0
Q ss_pred hhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhcC
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIKT 251 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~g 251 (260)
..++++++..+++.|.- .+|...- |++++|.++|++....+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777788888777764 3343333 88888888888877654
No 253
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=55.65 E-value=2.1e+02 Score=27.98 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=63.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CCCChhchHHHHHHHHhcCCCCCCc-ch
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCA-DV 197 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~~-~~ 197 (260)
+...+-...+.|++..+++.|..+.-.-.+. ..... ..+.... .| ..|...-++-.|.-+... ....| |.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qk---a~a~~--~k~nW~~-rG~yyLea~n~h~aV~~fQsA--LR~dPkD~ 596 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQK---APAFA--CKENWVQ-RGPYYLEAHNLHGAVCEFQSA--LRTDPKDY 596 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhh---chHHH--HHhhhhh-ccccccCccchhhHHHHHHHH--hcCCchhH
Confidence 4456678899999999999999883322211 11100 1111111 22 223333333333222211 12233 56
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHH
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEM 247 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m 247 (260)
..|..+..+|.++|+...|.++|..... +.|...- |.+++|+..+...
T Consensus 597 n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6777888888888888888888876554 3343333 5555555555443
No 254
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=55.64 E-value=1.7e+02 Score=26.89 Aligned_cols=54 Identities=13% Similarity=-0.014 Sum_probs=30.4
Q ss_pred CcchHHHH--HHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHh
Q 041786 194 CADVNTNK--ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 194 ~~~~~t~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~ 249 (260)
.|....|. .++..|-+.|+++.|....+...++ .|...- |.+++|..++++-++
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 34444444 4556677777777777777665543 222211 666666666665543
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=54.88 E-value=30 Score=25.83 Aligned_cols=32 Identities=9% Similarity=-0.106 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHCCCCc
Q 041786 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL 230 (260)
Q Consensus 199 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 230 (260)
.+.-+...|.+.|+.++|.+.|.++.+....+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~ 69 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSP 69 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH
Confidence 35555566666666666666666666554333
No 256
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=54.78 E-value=29 Score=23.85 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQG 170 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g 170 (260)
.+++.....+..-.|.++++.+.+.+...+...+.+.++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344555555555556666666665554444444444444444444
No 257
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.72 E-value=74 Score=22.50 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=51.0
Q ss_pred HcccchhHHHHHhhhhhcchH-----HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 26 RHDIYAERTLNRLNLTLISEL-----SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-----~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
.++.++..++...+.++.+.. +..+-+..+....+.|+..+...-+.++-+..++-.|.++|+-++..
T Consensus 41 ~hg~et~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 41 EHGPETAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred hcCcccHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344445555666666655522 44555666677789999999999999999999999999999998853
No 258
>PRK09462 fur ferric uptake regulator; Provisional
Probab=54.53 E-value=78 Score=22.72 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHhCCCCCCHhhHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSS-GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~ 172 (260)
+.+.|+.++..-. .++..+... +..=.|.++++.+.+.+...+...+.+.++.+.+.|+.
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445665544322 344444443 45667888888888777666666666667766666653
No 259
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.12 E-value=48 Score=25.32 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041786 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 68 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
-+++..|.+.-++.+.+++++.|.+..+. |+.|=. ..-..+..+....-|.....|.++|++|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~-----ft~LKG---L~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIH-----FTSLKG---LTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhccC---ccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 45667777777888888888877754221 111100 00012345677788999999999999999999887
No 260
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.00 E-value=47 Score=25.01 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 59 SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 59 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
...|+..+|..++..+...|+.++|.+...++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4469999999999999999999999999998875
No 261
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.91 E-value=53 Score=29.08 Aligned_cols=76 Identities=17% Similarity=0.041 Sum_probs=58.8
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCcc-
Q 041786 129 NAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCAD- 196 (260)
Q Consensus 129 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~- 196 (260)
++.+..|+++.|...|-+-..-. ++|.+.|..-..+|++.|+ ..+.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--------------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w 69 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--------------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW 69 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--------------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 34567899999999998766431 4577788888888998888 566675
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
..-|+-.-.++.-.|++++|..-|.+=.
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL 97 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGL 97 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHh
Confidence 4678888888888899999998886633
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.49 E-value=46 Score=24.49 Aligned_cols=41 Identities=24% Similarity=0.164 Sum_probs=23.2
Q ss_pred hhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhc
Q 041786 208 SKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
.+.++.+++..+++.|.- .+|.... |++++|+++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344566666666666654 2333322 6666666666666544
No 263
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.04 E-value=52 Score=23.65 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=43.2
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcH-HHHHHHHHHHHHHHhCCC
Q 041786 50 KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV-LLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 50 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~m~~~g~ 117 (260)
++...+++.|++++. ---.++..+.+.+..-.|.++++++.+.+...+. ..|++| +.+.+.|+
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L----~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTL----KLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHH----HHHHHCCC
Confidence 344556777887665 3456778888887778899999999987755543 456666 34455554
No 264
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.75 E-value=1.2e+02 Score=24.38 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=66.4
Q ss_pred hhhhcchHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------
Q 041786 39 NLTLISELSMWKTIELMKPDS-LSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------- 109 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------- 109 (260)
...++....|..+++.+.++= -.+-+.-...+ .+-..|+.++|.++++.+.+.+ +.|..++-.=+...
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 444555557777777765441 11112111111 2334577888888888888765 33444444322111
Q ss_pred --HHHHh--CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 110 --VRMIR--KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 110 --~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+.+.+ ..+.-|...|.-+-..|...|++++|.-+++++.-
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 22211 13567889999999999999999999999998864
No 265
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.51 E-value=1.3e+02 Score=24.41 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=26.0
Q ss_pred hCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 114 RKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 114 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+...+-+....+.|.+.-.+.|+.+.|...|++..+
T Consensus 205 ~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 205 KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333445666777777777888888888888887664
No 266
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.86 E-value=42 Score=23.67 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.....+.|+..+...-+.+|-+.+++..|.++|+-.+.
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999998875
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.67 E-value=92 Score=29.43 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=63.7
Q ss_pred HhccCCHHHHHHHHHHHHhCC-------CCCCHH---HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC--------CC
Q 041786 131 WCSSGKMREAQEFLQELSDKG-------FNPPVR---SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--------LG 192 (260)
Q Consensus 131 ~~~~g~~~~a~~~~~~m~~~~-------~~~~~~---~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--------~~ 192 (260)
+.+.|++++|.+-|-+-...= .-+|.. .--.+++.+.+.|+. +...-+.||.+|.+.++ .+
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 456788888876554332110 012222 344556777778864 77777899999999997 11
Q ss_pred CC--cchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc---ccHHHHHHHHHHHH
Q 041786 193 LC--ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---GQFDDAFCFFSEMQ 248 (260)
Q Consensus 193 ~~--~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---g~~~~a~~~~~~m~ 248 (260)
.. -...-....+..+.+.+-.++|..+=..-..+-...+... +++++|+++++.|.
T Consensus 457 ~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 457 CDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 11 1122234455555566666665544333222111111111 78888888887664
No 268
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.54 E-value=1.3e+02 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
.-|+.-++.| +.|++..|.+-|....+.
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~ 170 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKK 170 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHc
Confidence 3688887766 677799999999988764
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.98 E-value=1e+02 Score=22.71 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=41.3
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHhccCCHHHH
Q 041786 65 QTLSLIIEEF---GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL-VNAWCSSGKMREA 140 (260)
Q Consensus 65 ~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a 140 (260)
.+.+.||..+ .+.++.+++..++..++. +.|.....-.+ -.-+.+.|++++|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv------------------------LRP~~~e~~~~~~~l~i~r~~w~dA 63 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV------------------------LRPEFPELDLFDGWLHIVRGDWDDA 63 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH------------------------hCCCchHHHHHHHHHHHHhCCHHHH
Confidence 4455555544 456789999999998885 23443332221 2335678999999
Q ss_pred HHHHHHHHhC
Q 041786 141 QEFLQELSDK 150 (260)
Q Consensus 141 ~~~~~~m~~~ 150 (260)
.++|+++...
T Consensus 64 ~rlLr~l~~~ 73 (160)
T PF09613_consen 64 LRLLRELEER 73 (160)
T ss_pred HHHHHHHhcc
Confidence 9999998764
No 270
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=49.30 E-value=99 Score=22.35 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=24.0
Q ss_pred cccCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 55 MKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 55 m~~~g~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
|++.+..++.. ..|.++.-....++..-.+++++.+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~ 66 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLH 66 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 45556655543 34677777777777777777777764
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=49.07 E-value=1.7e+02 Score=24.99 Aligned_cols=188 Identities=10% Similarity=0.013 Sum_probs=101.9
Q ss_pred HHHHHHHhcccCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC
Q 041786 47 SMWKTIELMKPDS---LSVFPQTLSLIIEEFGK---HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120 (260)
Q Consensus 47 ~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~ 120 (260)
.+.++++.|.... +.-....--...-++-+ .|+.++|++++..+....-.+++.+|..+-..|+++-..+..-|
T Consensus 159 amI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d 238 (374)
T PF13281_consen 159 AMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTD 238 (374)
T ss_pred HHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccc
Confidence 6777777776541 11111111122234445 68889999999887666667788888888877755544432234
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-Ch-h---chHHHHHHHHhcCCCCCCc
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DL-E---TFNSLIETICKSGELGLCA 195 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~-~---~~~~li~~~~~~~~~~~~~ 195 (260)
.......|..|.+.=.. .|+......+.--+.-.|..- +. . +-..+-+.+.+.|..+-..
T Consensus 239 ~~~ldkAi~~Y~kgFe~---------------~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 239 RESLDKAIEWYRKGFEI---------------EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred hHHHHHHHHHHHHHHcC---------------CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 44444444444332111 122222222222222222110 00 0 0111222333444444444
Q ss_pred chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhc
Q 041786 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250 (260)
Q Consensus 196 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~ 250 (260)
+-=.+.+++.++.-.|+.++|.+..+.|.......|. .+..-+=+.++++....
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~-l~St~~ni~Li~~~~~~ 357 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE-LESTLENIKLIRHFRKR 357 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh-HHHHHHHHHHHHHHhcC
Confidence 5556678899999999999999999999987644443 35555666677766654
No 272
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=48.97 E-value=70 Score=27.95 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=55.7
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH------HH
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF------VR 111 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~------~~ 111 (260)
+.+.++....|.++-.+. .+...|..|-....+.|+++-|.+.|.+..+ |..|+..+ +.
T Consensus 327 LAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 344455555555543332 3778999999999999999999999998775 22232111 22
Q ss_pred HHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 112 MIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 112 m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
|.+. .+.....-+|....++.-.|++++..+++.+
T Consensus 392 L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 392 LSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2211 1112233466667777777888877777653
No 273
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.22 E-value=1.5e+02 Score=24.15 Aligned_cols=68 Identities=10% Similarity=0.233 Sum_probs=36.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhC-----CC------CCCHHHHHHHHHHHHHC-----CCCCChhchHHHHHHHH
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDK-----GF------NPPVRSAKQMVNKMIKQ-----GSVPDLETFNSLIETIC 186 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~------~~~~~~a~~l~~~m~~~-----g~~p~~~~~~~li~~~~ 186 (260)
.-...|......|++.+|++++.+..+. |+ .............+.+. -..-|+..|..++.||.
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~ 208 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQ 208 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344566677788888888877766542 11 11111122222222111 11357777777777777
Q ss_pred hcCC
Q 041786 187 KSGE 190 (260)
Q Consensus 187 ~~~~ 190 (260)
-.|+
T Consensus 209 lLgk 212 (291)
T PF10475_consen 209 LLGK 212 (291)
T ss_pred HHhh
Confidence 7775
No 274
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.18 E-value=63 Score=22.22 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=34.7
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhcCC
Q 041786 202 ISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTH 252 (260)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~g~ 252 (260)
++|.-+.+|.-.++|..+.+-|.++|-. ..+.|..+-..+..+|+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEI------t~e~A~eLr~~L~~kGv 110 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEI------TPEEAKELRSILVKKGV 110 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhH
Confidence 4566678899999999999999999852 45667777677776665
No 275
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.15 E-value=1.5e+02 Score=24.20 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=41.7
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
|-.++..+...+|..+++.+++.+-.++++.-... .+..-|...|..+|......|+
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~------------------~~~~~D~rpW~~FI~li~~sgD 253 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPN------------------SVPGNDPRPWAEFIKLIVESGD 253 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhccc------------------CCCCCCCchHHHHHHHHHHcCC
Confidence 46688888889999999999999998888765431 1233466667777777777775
No 276
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.08 E-value=94 Score=21.78 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 041786 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFN 88 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 88 (260)
+..++|..|.+.|+-.. +.-|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57888999988877654 4566677777888899999988886
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.89 E-value=1.2e+02 Score=23.31 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=50.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHh
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPA 206 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~ 206 (260)
+-+.+..+|++++|..-++.-... |....+..++.- .|-..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~----------------------t~De~lk~l~~l-----------------RLArv 135 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ----------------------TKDENLKALAAL-----------------RLARV 135 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc----------------------chhHHHHHHHHH-----------------HHHHH
Confidence 346788899999999888865532 222223333222 23344
Q ss_pred hhhhccHHHHHHHHHHHHHCCCCcCCCc---------ccHHHHHHHHHHHHhcC
Q 041786 207 VSKEFMIDEAFRLLCNLVEDGHKLFPSL---------GQFDDAFCFFSEMQIKT 251 (260)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~---------g~~~~a~~~~~~m~~~g 251 (260)
....|.+|+|..+++..++.+..+...- |+-++|+.-|+.-..++
T Consensus 136 q~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 136 QLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5566777777777776666654442211 66667776666665554
No 278
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=47.42 E-value=30 Score=15.78 Aligned_cols=27 Identities=22% Similarity=-0.108 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 199 TNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 199 t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
.|..+-..+...|+++.|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456667778888999999998887664
No 279
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.40 E-value=2.2e+02 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.275 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 158 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
+|.++++++.+.. .+|..+...++.+|++..-
T Consensus 476 ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 476 EASSLLEELVKFN-PNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH
Confidence 5555555555543 5788999999999998885
No 280
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=47.26 E-value=1.6e+02 Score=24.10 Aligned_cols=135 Identities=13% Similarity=0.029 Sum_probs=87.1
Q ss_pred HHhcCChHHHHHHHHHhhhcC-CCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 041786 74 FGKHGLIDNAVEVFNKCTAFN-CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152 (260)
Q Consensus 74 ~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 152 (260)
|...|.++.+ +..+.... -.|+...-+.++...+.-.+.. +-|...|-.|=..|.+.|+++.|..-|..-.+..
T Consensus 112 y~~vg~~~q~---~~r~~~~~a~~~~~~~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~- 186 (287)
T COG4235 112 YQAVGAPEQP---ADRLADPLAQPPAEQEMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA- 186 (287)
T ss_pred hhhcCCcccc---chhhhcccccCCCcccHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 4444555554 33333222 2466777788876554333332 2478899999999999999999999999766521
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC--------------CCCCc-chHHHHHHHHhhhhhccHHHHH
Q 041786 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--------------LGLCA-DVNTNKISIPAVSKEFMIDEAF 217 (260)
Q Consensus 153 ~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--------------~~~~~-~~~t~~~li~~~~~~g~~~~a~ 217 (260)
.+|+..+..+-.++..+.+ ....| |+..-..|-..+...|++.+|.
T Consensus 187 -------------------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~ 247 (287)
T COG4235 187 -------------------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAA 247 (287)
T ss_pred -------------------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 1344455555555444443 22333 5666777778899999999999
Q ss_pred HHHHHHHHCCCCcCC
Q 041786 218 RLLCNLVEDGHKLFP 232 (260)
Q Consensus 218 ~~~~~m~~~~~~p~~ 232 (260)
..|+.|.+..-.-++
T Consensus 248 ~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 248 AAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHhcCCCCCc
Confidence 999999887543333
No 281
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.62 E-value=99 Score=28.56 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+|+.+|..+|++-.+.++++.+...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~ 57 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDH 57 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC
Confidence 7999999999999999999987654
No 282
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=45.81 E-value=65 Score=19.58 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=35.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
++..+..++.+-.+.++.+.+...|...+.......++.|.+.|+
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Gl 47 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGL 47 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCC
Confidence 466667777777888888888888877777788888888888884
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=45.68 E-value=1.7e+02 Score=27.38 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 61 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
.|....|..|...-.+.-.++.|...|-....
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 36677777777666666667777766665543
No 284
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=45.39 E-value=2e+02 Score=24.83 Aligned_cols=131 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---------------HHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHH
Q 041786 78 GLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------------VRMIRKGFVPD-KRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 78 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---------------~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~ 141 (260)
|+.++|.+-|+.|. -|..|--.=+.|. -.-...+..|. ...+.+.+...|..|+++.|+
T Consensus 134 G~~~~Ar~kfeAMl-----~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 134 GDYEDARKKFEAML-----DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred CchHHHHHHHHHHh-----cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC----------------CCCCcchHHHHHHH-
Q 041786 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----------------LGLCADVNTNKISI- 204 (260)
Q Consensus 142 ~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~----------------~~~~~~~~t~~~li- 204 (260)
++.+.-+. ..-+.++..--.--.-.-++... .++.||..--..+-
T Consensus 209 kLvd~~~~------------------~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 209 KLVDAQRA------------------AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHH------------------HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHH
Q ss_pred HhhhhhccHHHHHHHHHHHHHCCCCcC
Q 041786 205 PAVSKEFMIDEAFRLLCNLVEDGHKLF 231 (260)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~p~ 231 (260)
.++.+.|++.++-.+++.+-+..-.|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChH
No 285
>PRK10292 hypothetical protein; Provisional
Probab=44.82 E-value=70 Score=19.35 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcC
Q 041786 135 GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189 (260)
Q Consensus 135 g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~ 189 (260)
|+...+.++|++|.. .+-.+.-.|...|.+|.......+|..-...+
T Consensus 2 ~n~~~~d~lY~EmCR--------VVGdvVl~m~~lG~e~k~i~Ia~vlrTa~a~~ 48 (69)
T PRK10292 2 GNRTKEDELYREMCR--------VVGKVVLEMRDLGQEPKHIVIAGVLRTALANK 48 (69)
T ss_pred CchHHHHHHHHHHHH--------HHHHHHHHHHHcCCCcchhhHHHHHHHHHHhc
Confidence 566778888888876 45667778889999999988888885544444
No 286
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=44.37 E-value=1.7e+02 Score=23.61 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhccCCHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR-THTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~ 142 (260)
...+.-+...+.+.|++++|.++|++....-.. ......+.. .|-..+-.+...|+...|..
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~-----------------~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLE-----------------NNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC-----------------HCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc-----------------ccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456677888899999999999999987753211 111223332 22223335566789999999
Q ss_pred HHHHHHhC
Q 041786 143 FLQELSDK 150 (260)
Q Consensus 143 ~~~~m~~~ 150 (260)
.|++....
T Consensus 218 ~~~~~~~~ 225 (282)
T PF14938_consen 218 ALERYCSQ 225 (282)
T ss_dssp HHHHHGTT
T ss_pred HHHHHHhh
Confidence 99987754
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=43.98 E-value=1.2e+02 Score=22.02 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=40.5
Q ss_pred HHHHHHHHHHH---hcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041786 65 QTLSLIIEEFG---KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 65 ~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 141 (260)
...+.||+... ..++++++..+++.|+-.. | -.|...+|-.. -+...|++++|.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P-------------------~~~e~d~~dg~--l~i~rg~w~eA~ 64 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLR--P-------------------NLKELDMFDGW--LLIARGNYDEAA 64 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--C-------------------CccccchhHHH--HHHHcCCHHHHH
Confidence 34455554443 4688899999998887521 1 01233344333 356788999999
Q ss_pred HHHHHHHhCC
Q 041786 142 EFLQELSDKG 151 (260)
Q Consensus 142 ~~~~~m~~~~ 151 (260)
++|++....+
T Consensus 65 rvlr~l~~~~ 74 (153)
T TIGR02561 65 RILRELLSSA 74 (153)
T ss_pred HHHHhhhccC
Confidence 9999888643
No 288
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.70 E-value=1.6e+02 Score=23.20 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=63.3
Q ss_pred chHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCcHHHHHHHHHHH---HHHHhCCCC
Q 041786 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF--NCQQCVLLYNSLHVCF---VRMIRKGFV 118 (260)
Q Consensus 44 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~---~~m~~~g~~ 118 (260)
+..+|++..++-.+.+ +-|...-+.+++.||-.|++++|..-++..-+. ...+...+|..+|.|- .+...-+..
T Consensus 16 sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evfag~~~ 94 (273)
T COG4455 16 SLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVFAGGAV 94 (273)
T ss_pred cHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3346777666654442 235677789999999999999999877776543 3456678999999775 445555555
Q ss_pred CC-----HhhHHHHHHH-H-hccCCHHHHHHHHH
Q 041786 119 PD-----KRTHTILVNA-W-CSSGKMREAQEFLQ 145 (260)
Q Consensus 119 p~-----~~~~~~li~~-~-~~~g~~~~a~~~~~ 145 (260)
|+ ...|-..|.+ . ++.+.-.+|.+-+.
T Consensus 95 Pgflg~p~p~wva~L~aala~h~dg~gea~~alr 128 (273)
T COG4455 95 PGFLGGPSPEWVAALLAALALHSDGAGEARTALR 128 (273)
T ss_pred CCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHH
Confidence 53 3345544433 3 33443444444444
No 289
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.23 E-value=33 Score=29.71 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHCCCCCChhc----hHHHHHHHHhcCC
Q 041786 134 SGKMREAQEFLQELSDKGFNPPVR---SAKQMVNKMIKQGSVPDLET----FNSLIETICKSGE 190 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~~~~~~~---~a~~l~~~m~~~g~~p~~~~----~~~li~~~~~~~~ 190 (260)
...+++|+.+.++-.+.|..-++. .|-+++.++.++|++||..| .+-.+++|+-.|-
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~ 279 (561)
T COG2987 216 AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGY 279 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcC
Confidence 568999999998888776544433 78899999999999998764 3446667777665
No 290
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=41.48 E-value=1.2e+02 Score=21.24 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 110 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
..+.+.++.-....+.-+=..|.+-.++.+|-++|+-++
T Consensus 87 ~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 87 QSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 345666665556666666667777777888887777554
No 291
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.24 E-value=1.4e+02 Score=27.32 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH------HHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV------CFVRMIRKGFVPDKRTHTILVNAWCSSGKM 137 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~------~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 137 (260)
...-+.+.+.+.+.|..++|+++--+-. .-|-..+. +++...+ .-+..-|..|=++....|++
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~D~d--------~rFelal~lgrl~iA~~la~e---~~s~~Kw~~Lg~~al~~~~l 682 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELSTDPD--------QRFELALKLGRLDIAFDLAVE---ANSEVKWRQLGDAALSAGEL 682 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCCChh--------hhhhhhhhcCcHHHHHHHHHh---hcchHHHHHHHHHHhhcccc
Confidence 3456777777777787777765532111 11111110 0011111 13567899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHH
Q 041786 138 REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217 (260)
Q Consensus 138 ~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~ 217 (260)
..|.+.|..-...+ .++--....| |..-...+-+.+.+.| ..|.-.-+|...|+++++.
T Consensus 683 ~lA~EC~~~a~d~~---------~LlLl~t~~g---~~~~l~~la~~~~~~g---------~~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 683 PLASECFLRARDLG---------SLLLLYTSSG---NAEGLAVLASLAKKQG---------KNNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhHHHHHHhhcchh---------hhhhhhhhcC---ChhHHHHHHHHHHhhc---------ccchHHHHHHHcCCHHHHH
Confidence 99999988655421 0000000111 2222223333333333 2445566788889999998
Q ss_pred HHHHHHHHCCCCcCCCc-------ccHHHHHHHHHH
Q 041786 218 RLLCNLVEDGHKLFPSL-------GQFDDAFCFFSE 246 (260)
Q Consensus 218 ~~~~~m~~~~~~p~~~~-------g~~~~a~~~~~~ 246 (260)
+++.+ .+.-|.... ..+.+...+|++
T Consensus 742 ~lLi~---t~r~peAal~ArtYlps~vs~iv~~wk~ 774 (794)
T KOG0276|consen 742 ELLIS---TQRLPEAALFARTYLPSQVSRIVELWKE 774 (794)
T ss_pred HHHHh---cCcCcHHHHHHhhhChHHHHHHHHHHHH
Confidence 88754 333333322 555555666654
No 292
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=39.86 E-value=65 Score=28.36 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.2
Q ss_pred hhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~g~~p~~~t 258 (260)
...++++|....++.++.+-... .|-.-.|..+|.++.++|+.||..|
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~~S--Ig~~GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKPIS--IGLLGNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCceE--EEeeccHHHHHHHHHHcCCCCCCcC
Confidence 34678888888888887764322 2455556888999999999999765
No 293
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=39.84 E-value=1.4e+02 Score=21.42 Aligned_cols=78 Identities=13% Similarity=-0.008 Sum_probs=48.0
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC--------------CCCCc
Q 041786 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--------------LGLCA 195 (260)
Q Consensus 130 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--------------~~~~~ 195 (260)
+.+..|+++.|++.|.+-... .+-+...||.--.++.-.|+ .|-+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--------------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--------------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--------------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence 567889999999999876542 12355667777777666665 12111
Q ss_pred c--hHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 196 D--VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 196 ~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
. ...|..--..|...|+-+.|..-|+..-+.|
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 1 1223222334667788888888887766655
No 294
>PRK04841 transcriptional regulator MalT; Provisional
Probab=39.80 E-value=3.5e+02 Score=25.96 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=20.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.+..+-..+...|++++|.+.+++...
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445556677889999999998886543
No 295
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=38.94 E-value=50 Score=28.62 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=36.2
Q ss_pred hhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~g~~p~~~t 258 (260)
.+..+++|.++-++-.+.|.... .|-.-.|.+++.++.++|+.||..|
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~p~S--Igl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 215 IAETLDEALALAEEATAAGEPIS--IGLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCCceE--EEEeccHHHHHHHHHHcCCCCceec
Confidence 45778888888888777764322 2555567889999999999999765
No 296
>PRK05414 urocanate hydratase; Provisional
Probab=38.94 E-value=69 Score=28.34 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=35.0
Q ss_pred hccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 041786 210 EFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258 (260)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~g~~p~~~t 258 (260)
..++|+|....++.++.+-... .|-.-.|..+|.++.++|+.||..|
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~S--Ig~~GNaadv~~~l~~~~i~pDlvt 262 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPLS--IGLLGNAADVLPELVRRGIRPDLVT 262 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCceE--EEEeccHHHHHHHHHHcCCCCCccC
Confidence 4678888888888887763222 2455556889999999999999765
No 297
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=38.15 E-value=41 Score=21.01 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCCC
Q 041786 235 GQFDDAFCFFSEMQIKTHPPNRPV 258 (260)
Q Consensus 235 g~~~~a~~~~~~m~~~g~~p~~~t 258 (260)
-..++|++.+++|+..|.++...-
T Consensus 50 l~~~~A~e~W~~L~~~GW~~~~~~ 73 (75)
T PF07864_consen 50 LTREEARELWKELQKTGWRRCEPQ 73 (75)
T ss_pred EEHHHHHHHHHHHHHcCCEECCCC
Confidence 567888888888888888776543
No 298
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=38.09 E-value=1.1e+02 Score=20.97 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCCCCC
Q 041786 241 FCFFSEMQIKTHPPNR 256 (260)
Q Consensus 241 ~~~~~~m~~~g~~p~~ 256 (260)
..+.+||..+|.+||.
T Consensus 55 ~lv~~EM~~RGY~~~~ 70 (120)
T TIGR02328 55 LLVMEEMATRGYHVSK 70 (120)
T ss_pred HHHHHHHHHcCCCCCh
Confidence 4456777777777775
No 299
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=37.70 E-value=3.4e+02 Score=25.27 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=21.9
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHHCCC
Q 041786 202 ISIPAVSKEFMIDEAFRLLCNLVEDGH 228 (260)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (260)
-.-.+|.++|+-.+|.++++++....+
T Consensus 822 EAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 822 EAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 345679999999999999999876654
No 300
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.77 E-value=2.9e+02 Score=24.15 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=69.9
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHH----HHHhCCC----------CCCH---HHHHHHHHHHHHCCCCCChh-chHH
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQ----ELSDKGF----------NPPV---RSAKQMVNKMIKQGSVPDLE-TFNS 180 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~~~----------~~~~---~~a~~l~~~m~~~g~~p~~~-~~~~ 180 (260)
.+..+|--|+..|...|.+.+|.-.-+ -|.++.. .++. ++|..+++.-.+ +.|+-. ..+.
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNL 443 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHH
Confidence 367899999999999999988765443 3433311 1221 266666655332 345432 3444
Q ss_pred HHHHHHhcCC-----------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 181 LIETICKSGE-----------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 181 li~~~~~~~~-----------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
+-..+...|. ....||....+.|-..++....+.+|...|......
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5555555555 556789999999999999999999998888776543
No 301
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=36.42 E-value=53 Score=28.87 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHCCCCCChhc----hHHHHHHHHhcCC
Q 041786 134 SGKMREAQEFLQELSDKGFNPPVR---SAKQMVNKMIKQGSVPDLET----FNSLIETICKSGE 190 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~~~~~~~---~a~~l~~~m~~~g~~p~~~~----~~~li~~~~~~~~ 190 (260)
..++|+|++..++-++.+...++. .+-+++.++.++|+.||..| .+..+.+|+-.|-
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~ 270 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGY 270 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCC
Confidence 457888988888887776544433 67888899988898887654 2334555665553
No 302
>PF14162 YozD: YozD-like protein
Probab=36.41 E-value=52 Score=18.85 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 041786 238 DDAFCFFSEMQIKTHPPNR 256 (260)
Q Consensus 238 ~~a~~~~~~m~~~g~~p~~ 256 (260)
+-|..+|.++.++|..|+.
T Consensus 12 EIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHHHccCCCcH
Confidence 3456667777777877764
No 303
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.01 E-value=2.7e+02 Score=23.67 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=48.0
Q ss_pred HHHHhcccCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH--------HHHHHHHhCCCCC
Q 041786 50 KTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH--------VCFVRMIRKGFVP 119 (260)
Q Consensus 50 ~~~~~m~~~g~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li--------~~~~~m~~~g~~p 119 (260)
++++.+.+.|..|+.. ...+.++..++.|+.+.+..+++.-....-..+..-.+.+. ...+.+.+.|..|
T Consensus 49 ~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~ 128 (413)
T PHA02875 49 EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128 (413)
T ss_pred HHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 4556666667666543 22345666667788777666665322111011111112222 1226667778777
Q ss_pred CHhhH--HHHHHHHhccCCHHHHHHHHH
Q 041786 120 DKRTH--TILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 120 ~~~~~--~~li~~~~~~g~~~~a~~~~~ 145 (260)
+.... .+.+...+..|+.+-+..+++
T Consensus 129 ~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 129 DIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 54322 234445556777766555543
No 304
>PLN02789 farnesyltranstransferase
Probab=35.84 E-value=2.6e+02 Score=23.27 Aligned_cols=29 Identities=3% Similarity=0.125 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
.+++.+-..+...+..++|+.+.+++.+.
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~l 66 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRL 66 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35556666666777888888888887763
No 305
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=35.74 E-value=2.2e+02 Score=24.72 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=35.8
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 75 GKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 75 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
.+.|.+.+|.+.|.+.... .| +.+.|+...|...-....+.|++++|+.--++..
T Consensus 260 fk~G~y~~A~E~Yteal~i--dP-----------------~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNI--DP-----------------SNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhccchhHHHHHHHHhhcC--Cc-----------------cccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 3556777777777765532 22 3456667777777777778888888876655444
No 306
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.36 E-value=1.9e+02 Score=22.91 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 68 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
--|-.-|.+.|++++|.++|+.+.. ...++|. .+...+...+..++.+.|+.+....+.-+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~------------------~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAAS------------------SYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH------------------HHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455778888999999998887743 2233443 23445666677777888888887776555
Q ss_pred HH
Q 041786 147 LS 148 (260)
Q Consensus 147 m~ 148 (260)
+.
T Consensus 244 Ll 245 (247)
T PF11817_consen 244 LL 245 (247)
T ss_pred Hh
Confidence 43
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=35.29 E-value=1.4e+02 Score=22.89 Aligned_cols=27 Identities=11% Similarity=-0.113 Sum_probs=20.4
Q ss_pred CCCcchHHHHHHHHhhhhhccHHHHHH
Q 041786 192 GLCADVNTNKISIPAVSKEFMIDEAFR 218 (260)
Q Consensus 192 ~~~~~~~t~~~li~~~~~~g~~~~a~~ 218 (260)
+-.+|+..+..|...|-+.|+.+.|.-
T Consensus 173 ~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 173 DDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 336777888888888888888887753
No 308
>PRK05414 urocanate hydratase; Provisional
Probab=34.86 E-value=55 Score=28.89 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHCCCCCChhc----hHHHHHHHHhcCC
Q 041786 134 SGKMREAQEFLQELSDKGFNPPVR---SAKQMVNKMIKQGSVPDLET----FNSLIETICKSGE 190 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~~~~~~~---~a~~l~~~m~~~g~~p~~~~----~~~li~~~~~~~~ 190 (260)
..++|+|++..++-++.+...++. .+-+++.++.++|+.||..| .+-.+.+|.-.|-
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~ 279 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGW 279 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCC
Confidence 457888888888888776544433 67888899999999887654 2233446666664
No 309
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.64 E-value=95 Score=18.89 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=29.3
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 041786 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152 (260)
Q Consensus 117 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 152 (260)
+.|....++-++..+++..-.++++..+.+..++|.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~ 39 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS 39 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457788889999999998889999999888887653
No 310
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.29 E-value=3e+02 Score=23.65 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=74.3
Q ss_pred HHHhcCChHHHHHHHHHhhhc-C---CCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 73 EFGKHGLIDNAVEVFNKCTAF-N---CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~-~---~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
.|.+.|++..|..-|+..... + ..++ ++.. .-...-..+++.|.-.|.|.+.+..|++..+...
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-----------ee~~-~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDE-----------EEQK-KAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCH-----------HHHH-HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 577788888888888775531 0 0000 0000 0112334566777888899999999988877766
Q ss_pred hCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCC
Q 041786 149 DKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228 (260)
Q Consensus 149 ~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (260)
..+ |+. ..|+-|.| .+|...|+++.|...|+.+.+ +
T Consensus 285 e~~---------------------~~N------~KALyRrG---------------~A~l~~~e~~~A~~df~ka~k--~ 320 (397)
T KOG0543|consen 285 ELD---------------------PNN------VKALYRRG---------------QALLALGEYDLARDDFQKALK--L 320 (397)
T ss_pred hcC---------------------CCc------hhHHHHHH---------------HHHHhhccHHHHHHHHHHHHH--h
Confidence 532 111 23444444 577778888888888888876 4
Q ss_pred CcCCCc-------------ccHHHHHHHHHHHHh
Q 041786 229 KLFPSL-------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 229 ~p~~~~-------------g~~~~a~~~~~~m~~ 249 (260)
.|++.. ...+...++|..|..
T Consensus 321 ~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 321 EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 576655 333344666776654
No 311
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=34.20 E-value=1.7e+02 Score=20.75 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=40.7
Q ss_pred chHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcC
Q 041786 177 TFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231 (260)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 231 (260)
-|.-.+.++...|. |. +|. .+..++-.+.-.|+++.|..+.+-..++|....
T Consensus 31 ~Y~p~v~g~L~~g~-g~-qd~-Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P 82 (132)
T PF05944_consen 31 KYLPWVEGVLASGS-GA-QDD-VLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMP 82 (132)
T ss_pred hHHHHHHHHHHcCC-CC-cCc-hHHhhHhhhhcccCHHHHHHHHHHHHHcCCCcc
Confidence 68888999998884 33 333 344566788999999999999999999997554
No 312
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.07 E-value=3.4e+02 Score=24.17 Aligned_cols=107 Identities=14% Similarity=0.196 Sum_probs=66.6
Q ss_pred HHHHHhc-ccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 041786 49 WKTIELM-KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTIL 127 (260)
Q Consensus 49 ~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~l 127 (260)
.+.+... .+.|+..+......++... .|++.+|+.++++....+ ....++..+. ++. |. .+...+..+
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia~~S--~Gd~RdAL~lLeq~i~~~--~~~it~~~V~----~~l--g~-~~~~~~~~l 254 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIAKKG--DGSVRDMLSFMEQAIVFT--DSKLTGVKIR----KMI--GY-HGIEFLTSF 254 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CChHHHHHHHHHHHHHhC--CCCcCHHHHH----HHh--CC-CCHHHHHHH
Confidence 3334433 3457777777776665443 589999999999866432 1122333332 111 44 366667777
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 041786 128 VNAWCSSGKMREAQEFLQELSDKGFNPPVR--SAKQMVNKM 166 (260)
Q Consensus 128 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~a~~l~~~m 166 (260)
+++....+....|+..+++|.+.|..|... ...+.|+.+
T Consensus 255 ~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l 295 (484)
T PRK14956 255 IKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTL 295 (484)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 887777777789999999999988766633 334444433
No 313
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=33.59 E-value=2.5e+02 Score=22.49 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 141 (260)
|-...|+.-+.. .+.|++++|.+.|+.+..... +-.-...+--.++.++-+.++.+.|+
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p--------------------~s~~~~qa~l~l~yA~Yk~~~y~~A~ 91 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHP--------------------FSPYSEQAQLDLAYAYYKNGEYDLAL 91 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCC--------------------CCcccHHHHHHHHHHHHhcccHHHHH
Confidence 444566665554 478999999999999986421 11123445556778888999999999
Q ss_pred HHHHHHHh-CCCCCCHH
Q 041786 142 EFLQELSD-KGFNPPVR 157 (260)
Q Consensus 142 ~~~~~m~~-~~~~~~~~ 157 (260)
..+++..+ .+-.|+..
T Consensus 92 ~~~drFi~lyP~~~n~d 108 (254)
T COG4105 92 AYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHhCCCCCChh
Confidence 98887654 45455544
No 314
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.41 E-value=1.4e+02 Score=19.49 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=37.2
Q ss_pred hhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 41 TLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 41 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
...+.+.+.++++.+.++|+ .+......+-.+-...|+.+.|.+++..+.
T Consensus 14 ~LV~~L~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 14 TLVDKMKTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV 63 (88)
T ss_pred HHHHHhhHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc
Confidence 34455578889999988885 455566666555556789999999999888
No 315
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=33.15 E-value=3.5e+02 Score=23.97 Aligned_cols=50 Identities=10% Similarity=0.318 Sum_probs=33.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHh
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 187 (260)
-=+.....+...|.+++++.++++|..+ +.++.+.-+..+|+.++-.+++
T Consensus 130 l~~i~a~sLIe~g~f~EgR~iLn~i~~~---------------llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 130 LDEIEAHSLIETGRFSEGRAILNRIIER---------------LLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHH---------------HhhhhhcccHHHHHHHHHHHhH
Confidence 3367788889999999999999987753 2233344555666654444443
No 316
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.81 E-value=4.3e+02 Score=24.96 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=50.9
Q ss_pred CCChhchHHHHHHHHhcCC-------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCC--CCcCCCcccHHHHHH
Q 041786 172 VPDLETFNSLIETICKSGE-------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG--HKLFPSLGQFDDAFC 242 (260)
Q Consensus 172 ~p~~~~~~~li~~~~~~~~-------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~g~~~~a~~ 242 (260)
.||-..|..=+.+++..++ .+.+..+.-|.....+|.+.|+.++|.+.+-+..... +..+..+|++.+|.+
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHH
Confidence 4888888888889988888 3444447788899999999999999999886543211 122223377777765
Q ss_pred H
Q 041786 243 F 243 (260)
Q Consensus 243 ~ 243 (260)
+
T Consensus 792 ~ 792 (829)
T KOG2280|consen 792 L 792 (829)
T ss_pred H
Confidence 4
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=32.18 E-value=2.7e+02 Score=23.66 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=29.5
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHH
Q 041786 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
-|.+.|.+++|++.|..-.. +.| |.+++..--.+|.+...+..|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia------------------------~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA------------------------VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhc------------------------cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 36677788888877765432 334 66666666666777666665554
No 318
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.00 E-value=74 Score=16.31 Aligned_cols=14 Identities=7% Similarity=0.171 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHh
Q 041786 136 KMREAQEFLQELSD 149 (260)
Q Consensus 136 ~~~~a~~~~~~m~~ 149 (260)
.+|.|..+|++...
T Consensus 2 E~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 2 EFDRARSIYERFVL 15 (32)
T ss_pred hHHHHHHHHHHHHH
Confidence 36777777777665
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=31.34 E-value=1.4e+02 Score=24.55 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=32.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
+++..-+.|..+|.+.+|.++.++....+ +-+...|-.++..|+..|+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--------------------pL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--------------------PLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--------------------hhhhHHHHHHHHHHHHhcc
Confidence 33555678899999999999888776532 2345555566777776664
No 320
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.06 E-value=1.5e+02 Score=21.17 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=30.8
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHhhhcCCCCcH-HHHHHH
Q 041786 54 LMKPDSLSVFPQTLSLIIEEFGKH-GLIDNAVEVFNKCTAFNCQQCV-LLYNSL 105 (260)
Q Consensus 54 ~m~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~-~~~~~l 105 (260)
.+.+.|+.++.. -..++..+... +..-.|.++++.+.+.+...+. .+|.+|
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L 59 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVL 59 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 345667765553 33444555543 4567888888888887755554 345555
No 321
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.44 E-value=2.9e+02 Score=22.27 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 67 LSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 67 ~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
+-.|-..+...|+.++|..+|..+.
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH
Confidence 3344455555555555555555444
No 322
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=30.06 E-value=3.5e+02 Score=23.13 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc---cCCHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCS---SGKMRE 139 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~ 139 (260)
+..+...|+-+|....+++.-.++++.+... |+. .+.-...+--...-|+.| .|+-++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~---p~~----------------~~~~~~~i~~~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL---PTC----------------DVANQHNIKFQYAFALNRRNKPGDREK 200 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc---Ccc----------------chhcchHHHHHHHHHHhhcccCCCHHH
Confidence 3334445555688888888888998888752 100 000011111122334445 899999
Q ss_pred HHHHHHHHHhCCCCCCHH---HHHHHHHHHHHCCCCCChhchHHHHHHHHhcC
Q 041786 140 AQEFLQELSDKGFNPPVR---SAKQMVNKMIKQGSVPDLETFNSLIETICKSG 189 (260)
Q Consensus 140 a~~~~~~m~~~~~~~~~~---~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~ 189 (260)
|.+++..+....-.++.+ -.-+++.++......-|......-|.+|.+.=
T Consensus 201 Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 201 ALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 999999865544433333 56666777765544446666777777777543
No 323
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.58 E-value=1.3e+02 Score=20.26 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=13.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG 78 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 78 (260)
.|.++++.+.+.+..++..|---.|+.+.+.|
T Consensus 18 sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 18 TAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 44444444444443334333333334444443
No 324
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=29.54 E-value=4.1e+02 Score=23.76 Aligned_cols=73 Identities=10% Similarity=-0.020 Sum_probs=49.6
Q ss_pred HHHHhhhhhcchHHHHHHHHhcccC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHH
Q 041786 34 TLNRLNLTLISELSMWKTIELMKPD-SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLH 106 (260)
Q Consensus 34 ~~~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li 106 (260)
.+-.+.-+.+...+|.+.|.+|.+. ...-+......||..+...+...++..++.+-.+...+.+ ...|+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3444455567777999999999654 3222445677899999999999999999998654333222 23455544
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=29.53 E-value=4.6e+02 Score=26.26 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=23.5
Q ss_pred CCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHH
Q 041786 171 SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220 (260)
Q Consensus 171 ~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~ 220 (260)
..|+...+.-+..+|+..=. ....|.-..-+|.++|+.++|..-|
T Consensus 931 y~~~~e~~k~i~~~ya~hL~-----~~~~~~~Aal~Ye~~GklekAl~a~ 975 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLR-----EELMSDEAALMYERCGKLEKALKAY 975 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHH-----HhccccHHHHHHHHhccHHHHHHHH
Confidence 35777777777777765542 1122222333444555555554444
No 326
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=28.70 E-value=4.8e+02 Score=24.19 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=54.5
Q ss_pred CCChhchH--HHHHHHHhcCC-----------CCCCcch-HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc---
Q 041786 172 VPDLETFN--SLIETICKSGE-----------LGLCADV-NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--- 234 (260)
Q Consensus 172 ~p~~~~~~--~li~~~~~~~~-----------~~~~~~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--- 234 (260)
+|....|+ .+...|-+.|+ -+-.|+. ..|..=-+.+...|.+++|..++++.++-+. ||...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHH
Confidence 45555554 45666777776 3444543 3455556788999999999999999886642 33333
Q ss_pred --------ccHHHHHHHHHHHHhcCC
Q 041786 235 --------GQFDDAFCFFSEMQIKTH 252 (260)
Q Consensus 235 --------g~~~~a~~~~~~m~~~g~ 252 (260)
.+.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 788888888877776664
No 327
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.58 E-value=5.1e+02 Score=24.44 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=58.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 041786 56 KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSG 135 (260)
Q Consensus 56 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g 135 (260)
.+.|+..+......|+... .|++..++.+++++...|- ...+...+ ..|. |. .+......|++++.+ +
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V----~~lL--G~-~d~~~If~LldAL~~-~ 259 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDV----RQMI--GA-VDKQYLYELLTGIIN-Q 259 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHH----HHHH--cc-cCHHHHHHHHHHHHc-C
Confidence 4568888888887777665 6999999999988776431 11111111 1111 22 344456667777766 8
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 041786 136 KMREAQEFLQELSDKGFNPP 155 (260)
Q Consensus 136 ~~~~a~~~~~~m~~~~~~~~ 155 (260)
+...++.+++++...|..+.
T Consensus 260 d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 260 DGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred CHHHHHHHHHHHHHhCCCHH
Confidence 89999999999998887544
No 328
>PHA02875 ankyrin repeat protein; Provisional
Probab=28.50 E-value=3.7e+02 Score=22.87 Aligned_cols=10 Identities=20% Similarity=-0.233 Sum_probs=4.2
Q ss_pred HHHHHhcCCh
Q 041786 71 IEEFGKHGLI 80 (260)
Q Consensus 71 i~~~~~~~~~ 80 (260)
++..++.|+.
T Consensus 39 L~~A~~~~~~ 48 (413)
T PHA02875 39 IKLAMKFRDS 48 (413)
T ss_pred HHHHHHcCCH
Confidence 3333444444
No 329
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=28.31 E-value=4.2e+02 Score=23.41 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=37.8
Q ss_pred cchHHHHHHH-HhhhhhccHHHHHHHHHHHHHCCCCcCCCc---------------ccHHHHHHHHHHHHhc-CCCC
Q 041786 195 ADVNTNKISI-PAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------------GQFDDAFCFFSEMQIK-THPP 254 (260)
Q Consensus 195 ~~~~t~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---------------g~~~~a~~~~~~m~~~-g~~p 254 (260)
|+...|...- ..+...|++++|.+.|++...... -+... +++++|...|..+.+. .+.+
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk 339 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQS-EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK 339 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh-hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH
Confidence 6666554433 446677999999999987553211 11111 8999999999888764 4433
No 330
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=28.27 E-value=69 Score=28.09 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=59.7
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC------C---CCC----CHHHHHHHHHHHHHCCC--------CC
Q 041786 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK------G---FNP----PVRSAKQMVNKMIKQGS--------VP 173 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~---~~~----~~~~a~~l~~~m~~~g~--------~p 173 (260)
.|+.||...|.+=..+--+.-....|++.++.+.-. + -.+ ....-+++|+.+.-..- ..
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~ 488 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCA 488 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhcchhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcC
Confidence 467788888876666655666677777777655311 0 011 12255666665532211 01
Q ss_pred ChhchHHHHHHHHhcCC------------------------------------------------CCCCcchHHHHHHHH
Q 041786 174 DLETFNSLIETICKSGE------------------------------------------------LGLCADVNTNKISIP 205 (260)
Q Consensus 174 ~~~~~~~li~~~~~~~~------------------------------------------------~~~~~~~~t~~~li~ 205 (260)
-+.-|+.|..++.|.-. ..+.|.+.||..|++
T Consensus 489 ~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLr 568 (650)
T KOG4334|consen 489 IPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLR 568 (650)
T ss_pred CCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHH
Confidence 23457778888777654 457899999999999
Q ss_pred hhhhh
Q 041786 206 AVSKE 210 (260)
Q Consensus 206 ~~~~~ 210 (260)
.|.+.
T Consensus 569 iYGr~ 573 (650)
T KOG4334|consen 569 IYGRL 573 (650)
T ss_pred Hhhhh
Confidence 99876
No 331
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.16 E-value=1.2e+02 Score=20.67 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=13.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCc
Q 041786 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98 (260)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 98 (260)
.++..+...+..-.|.++++.+.+.+...+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is 41 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRIS 41 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcC
Confidence 344444444444445555555555444443
No 332
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=28.02 E-value=1.4e+02 Score=17.79 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 041786 237 FDDAFCFFSEMQIKTHPP 254 (260)
Q Consensus 237 ~~~a~~~~~~m~~~g~~p 254 (260)
.+.+.++|+-|.++|+-|
T Consensus 44 ~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHcCCcC
Confidence 344455555555555443
No 333
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=27.58 E-value=85 Score=26.46 Aligned_cols=28 Identities=4% Similarity=-0.133 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhcCCCCcHHHHHHHHHHH
Q 041786 82 NAVEVFNKCTAFNCQQCVLLYNSLHVCF 109 (260)
Q Consensus 82 ~a~~~~~~m~~~~~~~~~~~~~~li~~~ 109 (260)
.-.++|++..++|+--|..+=..+|.-+
T Consensus 314 ~l~~L~~eFekRGvffD~~SkqeiI~fy 341 (363)
T TIGR03236 314 PLNRLIEEFSKRGVAFDRQSQQMLIEFY 341 (363)
T ss_pred hHHHHHHHHHhcCceeCchhHHHHHHHH
Confidence 3445555555555555555555555444
No 334
>PRK15331 chaperone protein SicA; Provisional
Probab=27.37 E-value=2.6e+02 Score=20.73 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=26.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHH
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVR-SAKQMVNKMIK 168 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~a~~l~~~m~~ 168 (260)
.=..|...|+.+.|.+.|+....+.-..... +|..+++.+.+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHc
Confidence 4456778899999999998777632211111 56666665543
No 335
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=27.31 E-value=74 Score=28.15 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=29.2
Q ss_pred hhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~g~~p~~~t 258 (260)
...++|+|.+..++-++.+-.... |-.-.|..+|+++.++|+.||..|
T Consensus 205 ~~~~ldea~~~~~ea~~~~~~~SI--g~~GN~ad~~~~l~~~~i~pDl~t 252 (546)
T PF01175_consen 205 VTDDLDEALARAKEARAKKEPLSI--GLLGNAADLWEELVERGIIPDLVT 252 (546)
T ss_dssp EESSHHHHHHHHHHHHHTT--EEE--EEES-HHHHHHHHHHTT---SEE-
T ss_pred EcCCHHHHHHHHHHhhccCCeeEE--EEeccHHHHHHHHHHcCCCCCccc
Confidence 346788888888888877643222 444455788888988899988654
No 336
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.17 E-value=1.8e+02 Score=25.21 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=30.5
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 130 AWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 130 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
-..+.|++..|.++|.+-...+ .....|+...|-..-....+.|+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~id----------------P~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNID----------------PSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCC----------------ccccchhHHHHHHhHhhhcccCC
Confidence 3557778888888887765432 23456677777777777777776
No 337
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=26.71 E-value=1.9e+02 Score=18.79 Aligned_cols=51 Identities=4% Similarity=0.014 Sum_probs=31.8
Q ss_pred hcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhcCCC
Q 041786 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG---LIDNAVEVFNKCTAFNCQ 96 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~ 96 (260)
....+.+.++++.|.+.|+ .+.....-+. ++.. +-++|..+++.+..+|-.
T Consensus 12 L~~~l~~~~l~d~L~q~~V-Lt~~d~EeI~---~~~t~~~r~~ka~~LLdiL~~rG~~ 65 (86)
T cd08785 12 LTRKINPSRLTPYLRQCKV-LDEQDEEEVL---SSPRLPIRANRTGRLLDILATRGKR 65 (86)
T ss_pred HHHHhhHHHHHHHHHhcCC-CCHHHHHHHh---CCCccccHHHHHHHHHHHHHhcCcc
Confidence 3344467778888888875 3444333333 3333 348888888888876643
No 338
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=26.04 E-value=3.2e+02 Score=21.31 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHCCC--CCChhchHHHHHHHHhcCC---CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 155 PVRSAKQMVNKMIKQGS--VPDLETFNSLIETICKSGE---LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 155 ~~~~a~~l~~~m~~~g~--~p~~~~~~~li~~~~~~~~---~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
+---|..+|.-+...+. ..|.......+..++..-. ..+..|...|...+. +++.|.++.+++..
T Consensus 136 SRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~kDL~lYrsnLe------Km~qA~el~ee~~~ 205 (216)
T PF11264_consen 136 SRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEKDLDLYRSNLE------KMAQAKELMEEILE 205 (216)
T ss_pred HHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHhhHHHHHhHHH------HHHHHHHHHHHHHH
Confidence 33366667777666554 4566666666666665443 445667788887776 66777888777654
No 339
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.91 E-value=4.8e+02 Score=23.35 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=57.9
Q ss_pred HHHHHHHh-cccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHH
Q 041786 47 SMWKTIEL-MKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125 (260)
Q Consensus 47 ~a~~~~~~-m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~ 125 (260)
+..+.+.. +.+.|+..+......++... .|++..|...++.+...+-. .+...+. ++ .|. +.....-
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~---It~~~V~----~~--l~~-~~~~~if 246 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTP---VTRKQVE----EA--LGL-PPQERLR 246 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCC---CCHHHHH----HH--HCC-CcHHHHH
Confidence 33444433 34567777777777766555 58888888888887654311 1221111 00 133 3344445
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP 155 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 155 (260)
.+++++ ..+++++|..+++++...|..|.
T Consensus 247 ~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 247 GIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 566666 45889999999999998885544
No 340
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=25.83 E-value=35 Score=20.00 Aligned_cols=30 Identities=7% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGK 76 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 76 (260)
+...+|..|..+.+.|....||-.+.=|.+
T Consensus 10 ~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 10 ELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred HHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 567888889888888888888777765543
No 341
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.81 E-value=6e+02 Score=24.40 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=58.7
Q ss_pred HHHHHHHhc-ccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHH
Q 041786 47 SMWKTIELM-KPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT 125 (260)
Q Consensus 47 ~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~ 125 (260)
+..+.++.. .+.|+..+......|.... .|++.+|+.++++....+-. ..+...+ ..| .|. +|...+.
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~--~It~~~V----~~~--LG~-~d~~~i~ 250 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSAN--EVTETAV----SGM--LGA-LDQTYMV 250 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccC--CcCHHHH----HHH--hCC-CCHHHHH
Confidence 444444443 3457777776666665544 78899999998876643211 1111111 111 133 4444566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPP 155 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 155 (260)
.++.++.. |+..+++.+++++...|....
T Consensus 251 ~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 251 RLLDALAA-GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 67776554 889999999999998887555
No 342
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.80 E-value=2e+02 Score=18.75 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=24.0
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (260)
....+++.+.+.|+- +...+..+- +...+.+++..+++.++.+|
T Consensus 21 ~~~~v~~~L~~~gvl-t~~~~~~I~---~~~t~~~k~~~Lld~L~~RG 64 (90)
T cd08332 21 VLDELLIHLLQKDIL-TDSMAESIM---AKPTSFSQNVALLNLLPKRG 64 (90)
T ss_pred CHHHHHHHHHHcCCC-CHHHHHHHH---cCCCcHHHHHHHHHHHHHhC
Confidence 455666666666652 333333222 23345667777777777654
No 343
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=25.26 E-value=1.6e+02 Score=21.19 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=25.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 71 IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 71 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
+..+...|-+.+...++++|.+.|+..+...|+-++
T Consensus 116 L~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL 151 (157)
T COG2405 116 LALAKSKGLISKDKPILDELIEKGFRISRSILEEIL 151 (157)
T ss_pred HHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHH
Confidence 344445667777778888888888777777777665
No 344
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=24.59 E-value=64 Score=28.52 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHCCCCCChhc----hHHHHHHHHhcC
Q 041786 134 SGKMREAQEFLQELSDKGFNPPVR---SAKQMVNKMIKQGSVPDLET----FNSLIETICKSG 189 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~~~~~~~---~a~~l~~~m~~~g~~p~~~~----~~~li~~~~~~~ 189 (260)
..++|+|++..++-++.+...++. .+-+++.++.+.|+.||..| .+-.+.+|.-.|
T Consensus 206 ~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g 268 (546)
T PF01175_consen 206 TDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAG 268 (546)
T ss_dssp ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT
T ss_pred cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCC
Confidence 457888888888887776543332 67788888888888887653 223333555555
No 345
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.48 E-value=3.2e+02 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.2
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 202 ISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
..+..|.+.|.+++|.++++.....
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC
Confidence 4456799999999999999998764
No 346
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.45 E-value=4.4e+02 Score=22.31 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=46.7
Q ss_pred hcchHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 42 LISELSMWKTIELMKPDSLSVF----PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
-+...+.+.+++++.+. -|+ +.-|-.+.....+.|.+++++.+|++....|-+|-...-..++
T Consensus 116 Gcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 116 GCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred CCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 33444777777777655 244 4567888899999999999999999999988888655544444
No 347
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.36 E-value=2.4e+02 Score=21.45 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..+-.|.+.|.+++|.+++++.-.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc
Confidence 456789999999999999998765
No 348
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.35 E-value=3.7e+02 Score=21.49 Aligned_cols=72 Identities=15% Similarity=0.018 Sum_probs=32.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHHCC-CCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHH
Q 041786 148 SDKGFNPPVRSAKQMVNKMIKQG-SVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220 (260)
Q Consensus 148 ~~~~~~~~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~ 220 (260)
.+.+...+.....++.+-+...+ -.|...++..-.-..++.|. ...-+......+-..|.+.|++.+|+..|
T Consensus 41 ~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 41 EKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGS-YKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS--TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCC-CCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33455555444344443333332 23455555444444443332 22234555666667777788888877666
No 349
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.26 E-value=3e+02 Score=20.33 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 139 EAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 139 ~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
.=..|++.+...+ ....|.+|++.+.+.+..++..|.---|..+.+.|-
T Consensus 27 qR~~IL~~l~~~~---~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 27 QRLEVLRLMSLQP---GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHHHHhcC---CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3344555555432 233689999999999988888888888899999886
No 350
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=23.84 E-value=80 Score=27.30 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCCCCCChhchHH
Q 041786 158 SAKQMVNKMIKQGSVPDLETFNS 180 (260)
Q Consensus 158 ~a~~l~~~m~~~g~~p~~~~~~~ 180 (260)
.+.+++....+.|+.+|..+|.-
T Consensus 155 y~drl~g~y~e~Gv~inrE~FGp 177 (441)
T PF06368_consen 155 YVDRLCGYYEENGVEINREPFGP 177 (441)
T ss_dssp HHHHHHHHHHHTT---EEE--TT
T ss_pred HHHHHHHHHHhcCCccccccCCC
Confidence 44455555566666666666544
No 351
>PLN02789 farnesyltranstransferase
Probab=23.65 E-value=4.3e+02 Score=21.96 Aligned_cols=102 Identities=4% Similarity=-0.055 Sum_probs=58.0
Q ss_pred HHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---------------
Q 041786 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHG-LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--------------- 109 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--------------- 109 (260)
+|+.+.++..+.. |+ ...|+.--..+.+.| .+++++..++++.+.+-+ +..+|+..-.+.
T Consensus 55 rAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 55 RALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred HHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 5556665554432 22 334544444445555 467888888777765422 223444222111
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 041786 110 VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152 (260)
Q Consensus 110 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 152 (260)
+++.+.. .-|...|+-.-..+.+.|+++++++.++++.+.+.
T Consensus 132 ~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 132 RKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 2222211 23566777777778888899999999998877543
No 352
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=23.53 E-value=6.4e+02 Score=23.92 Aligned_cols=89 Identities=13% Similarity=0.070 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH---HHHHHHHhCCCCCCHhhHHHHHHHHh
Q 041786 59 SLSVFPQTLSLIIEE---FGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH---VCFVRMIRKGFVPDKRTHTILVNAWC 132 (260)
Q Consensus 59 g~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~~~m~~~g~~p~~~~~~~li~~~~ 132 (260)
+..-+..++..+-++ |...++.+++ .|-...+.-..|-...+.+.+ ...+++....+.-|...|-.|.-+..
T Consensus 257 ~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~ 334 (799)
T KOG4162|consen 257 SWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALS 334 (799)
T ss_pred ccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 333344444444433 3344556665 333333333333333333333 23355666667788999999999999
Q ss_pred ccCCHHHHHHHHHHHHh
Q 041786 133 SSGKMREAQEFLQELSD 149 (260)
Q Consensus 133 ~~g~~~~a~~~~~~m~~ 149 (260)
++|+++.+-+.|++...
T Consensus 335 ~~g~f~~lae~fE~~~~ 351 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALP 351 (799)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 99999999999887654
No 353
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=23.43 E-value=6.2e+02 Score=23.75 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHhhh
Q 041786 58 DSLSVFPQTLSLIIEEFGKHGL----IDNAVEVFNKCTA 92 (260)
Q Consensus 58 ~g~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~ 92 (260)
.|++.|+..|..|+.++....+ ++++.++++.++.
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~ 249 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKK 249 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHH
Confidence 4778899999999988776432 4667777776653
No 354
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=23.22 E-value=4.4e+02 Score=21.92 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=46.9
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCcHHHHHHHHHHHHHHHhCCCCCCHhhHHH-HHH
Q 041786 53 ELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNC--QQCVLLYNSLHVCFVRMIRKGFVPDKRTHTI-LVN 129 (260)
Q Consensus 53 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~-li~ 129 (260)
....+.|++.+....+.|+..+. |+...+.+-++.+.-... ..+......++ .+..+++. =+-
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v------------~~~~~~~~f~l~ 216 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVV------------SDVAEFNIFDLA 216 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHH------------hccccCCHHHHH
Confidence 33456677788887777777775 666666665555543211 12221111111 12222221 122
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC
Q 041786 130 AWCSSGKMREAQEFLQELSDKGFNP 154 (260)
Q Consensus 130 ~~~~~g~~~~a~~~~~~m~~~~~~~ 154 (260)
-....|+..+|.++++++...|..|
T Consensus 217 dail~g~~~~a~~~l~~L~~~ge~p 241 (334)
T COG1466 217 DALLKGDVKKALRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCcH
Confidence 3345677888888888877766443
No 355
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=23.21 E-value=1.1e+02 Score=18.49 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHHHHhcC-CCCCC
Q 041786 235 GQFDDAFCFFSEMQIKT-HPPNR 256 (260)
Q Consensus 235 g~~~~a~~~~~~m~~~g-~~p~~ 256 (260)
=+++.|...|.++...| |.|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 47888888888888764 55543
No 356
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=22.96 E-value=2.1e+02 Score=21.29 Aligned_cols=24 Identities=0% Similarity=0.108 Sum_probs=14.2
Q ss_pred HHHHHhhh-cCCCCcHHHHHHHHHH
Q 041786 85 EVFNKCTA-FNCQQCVLLYNSLHVC 108 (260)
Q Consensus 85 ~~~~~m~~-~~~~~~~~~~~~li~~ 108 (260)
++++.+.+ .|+.|...++..++..
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~l 176 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTL 176 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHH
Confidence 45555554 6677776666665543
No 357
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.79 E-value=3.7e+02 Score=20.83 Aligned_cols=41 Identities=15% Similarity=-0.096 Sum_probs=28.4
Q ss_pred HhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHH
Q 041786 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSE 246 (260)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~ 246 (260)
..+.+.|+.++|.+.|..+...+-.+. ...-.+.|...++.
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~~~s~-~~~l~~~AR~~w~~ 213 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSKKASK-EPKLKDMARDQWQL 213 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCCCCCC-cHHHHHHHHHHHHh
Confidence 456788999999999999997765443 22334556665554
No 358
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.61 E-value=3.7e+02 Score=20.77 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=88.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh----cCCCCcHH-HHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 041786 58 DSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA----FNCQQCVL-LYNSLHVCFVRMIRKGFVPDK-RTHTILVNAW 131 (260)
Q Consensus 58 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~-~~~~li~~~~~m~~~g~~p~~-~~~~~li~~~ 131 (260)
.|..++...++.++..+.+..-...=...+-.|+. ++..++-. -.+.++.-.+.-++.| |- ..=+..++.+
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~---DW~klg~ly~nv~ 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKG---DWTKLGNLYINVK 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhc---cHHHHhhHHhhHH
Confidence 47788999999999988876544444444444443 34433322 1112221111111211 11 1112234444
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-CCC--CcchHHHHHHHHhhh
Q 041786 132 CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-LGL--CADVNTNKISIPAVS 208 (260)
Q Consensus 132 ~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~--~~~~~t~~~li~~~~ 208 (260)
+-+.++++-.++.... |..+..+.++ + -..-|-....+-++.-+ ... .+=-..-..++..|-
T Consensus 79 ~gce~~~dlq~~~~~v-----------a~~Ltkd~Kd---k-~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yh 143 (233)
T PF14669_consen 79 MGCEKFADLQRFCACV-----------AEALTKDSKD---K-PGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYH 143 (233)
T ss_pred hhcCCHHHHHHHHHHH-----------HHHHHhcccc---c-CCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHH
Confidence 4444444444333221 1122222211 1 12234444444333321 111 111233456778899
Q ss_pred hhccHHHHHHHHHHHHHCCCCc---------CCCc----------------ccHHHHHHHHHHHHhcCCCCCCCCC
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKL---------FPSL----------------GQFDDAFCFFSEMQIKTHPPNRPVY 259 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p---------~~~~----------------g~~~~a~~~~~~m~~~g~~p~~~ty 259 (260)
+.-++.+++++++.|.+..+.- ...+ |++|.|+.+++ ++.+-.|..+|
T Consensus 144 k~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~t~lW 216 (233)
T PF14669_consen 144 KTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIISTPLW 216 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeecCCCC
Confidence 9999999999999997664321 1111 99999999988 34455554443
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=22.53 E-value=1e+02 Score=14.44 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=11.8
Q ss_pred CChHHHHHHHHHhhhc
Q 041786 78 GLIDNAVEVFNKCTAF 93 (260)
Q Consensus 78 ~~~~~a~~~~~~m~~~ 93 (260)
|+.+.|..+|+.+...
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4567888888887754
No 360
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=22.52 E-value=2.4e+02 Score=18.57 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=22.6
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 041786 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94 (260)
Q Consensus 48 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (260)
...+++.+.+.|+ .+..-|..+-. .....++|..+++.+..+|
T Consensus 25 v~~ilD~Ll~~~V-lt~ee~e~I~~---~~t~~~qAr~Lld~l~~KG 67 (94)
T cd08329 25 VLPILDSLLSANV-ITEQEYDVIKQ---KTQTPLQARELIDTVLVKG 67 (94)
T ss_pred hHHHHHHHHHcCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHhhh
Confidence 3446666666664 34444443322 2233466666666666655
No 361
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=22.49 E-value=2.1e+02 Score=18.09 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 97 (260)
|+......++..+.. ++++++...+.++...|+.+
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~ 37 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSA 37 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH
Confidence 445555566666655 48888888888887656543
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=22.47 E-value=1.8e+02 Score=18.65 Aligned_cols=43 Identities=7% Similarity=-0.007 Sum_probs=30.3
Q ss_pred chHHHHHHHHhcccCCC-CCCH-HHHHHHHHHHHhcCChHHHHHH
Q 041786 44 SELSMWKTIELMKPDSL-SVFP-QTLSLIIEEFGKHGLIDNAVEV 86 (260)
Q Consensus 44 ~~~~a~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~~~~~~a~~~ 86 (260)
....|+..|....++-. .++. .++..|+.+|+..|++.+++..
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33478888877654422 2333 5778899999999999887764
No 363
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=22.26 E-value=1.1e+02 Score=24.16 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHCCCCcC---CCc-----ccHHHH-HHHHHHHHhcCCCC
Q 041786 212 MIDEAFRLLCNLVEDGHKLF---PSL-----GQFDDA-FCFFSEMQIKTHPP 254 (260)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~p~---~~~-----g~~~~a-~~~~~~m~~~g~~p 254 (260)
..+.+..+-+.|.+.|+.|- +.. |++... ...+.++.++|+.|
T Consensus 79 m~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvP 130 (252)
T COG1608 79 MLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVP 130 (252)
T ss_pred HHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEe
Confidence 44566777788888888773 222 777777 88889999888887
No 364
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=21.89 E-value=1.8e+02 Score=20.79 Aligned_cols=44 Identities=16% Similarity=0.002 Sum_probs=36.9
Q ss_pred HhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHH
Q 041786 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQ 248 (260)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~ 248 (260)
..+.+.|.-+......+.+.+.+..|.....+.+.|+.+|+|+.
T Consensus 80 Q~~Ivd~sd~Nl~~W~~~L~ka~l~~~it~~q~~lAl~flrele 123 (148)
T PF06711_consen 80 QTFIVDGSDENLQRWRRILQKAGLSPPITDEQVRLALGFLRELE 123 (148)
T ss_pred eeeeecCCHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Confidence 34567788888888888889999999988899999999998875
No 365
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=21.59 E-value=3.2e+02 Score=19.69 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=38.2
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 73 EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 73 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+.+..|+++.|++.|.+.... .+-+...||.--.++.-.|+.++|.+=+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----------------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----------------------APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----------------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 567789999999999986642 123556677777777777777777766665443
No 366
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.58 E-value=3e+02 Score=24.24 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=33.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
+..++++.+.+.|- +| ....-|++|.|.+++++|..-+++-.+.
T Consensus 72 e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 72 EHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKA 115 (480)
T ss_pred HHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhc
Confidence 67777777777652 23 4556689999999999999888876653
No 367
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=21.36 E-value=2e+02 Score=18.16 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK 89 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (260)
.+.++|..|.+.|. .+..-...|...+...|+.+-+..+.+-
T Consensus 38 ~~~dlf~~Le~~~~-i~~~nl~~L~~lL~~i~R~DL~~~i~~~ 79 (84)
T PF01335_consen 38 SGLDLFEELEKRGL-ISPDNLSLLKELLKRIGRPDLLKKIEEY 79 (84)
T ss_dssp SHHHHHHHHHHTTS-SSTTBHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHcCC-CCCccHHHHHHHHHHhCHHHHHHHHHHH
Confidence 68899999988764 3444567788888888988888777653
No 368
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=21.09 E-value=24 Score=22.53 Aligned_cols=20 Identities=5% Similarity=0.135 Sum_probs=7.0
Q ss_pred CcchHHHHHHHHhhhhhccH
Q 041786 194 CADVNTNKISIPAVSKEFMI 213 (260)
Q Consensus 194 ~~~~~t~~~li~~~~~~g~~ 213 (260)
..+..+|...|++|++.|.+
T Consensus 21 sk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 21 SKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp TTTTTB------TTSS--EE
T ss_pred hcccceeeeeecccccceEE
Confidence 34556677777777776643
No 369
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=20.92 E-value=2.5e+02 Score=18.18 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=14.5
Q ss_pred cccchhHHHHHhhhhhcchHHHHHHHHhcccCCC
Q 041786 27 HDIYAERTLNRLNLTLISELSMWKTIELMKPDSL 60 (260)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 60 (260)
.+..+...+..+...-.++..|.++++.....|-
T Consensus 27 n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG~ 60 (85)
T cd08324 27 NDYFSTEDAEIVCACPTQPDKVRKILDLVQSKGE 60 (85)
T ss_pred cCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 3333333333333333344455555555444443
No 370
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=20.87 E-value=2e+02 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHCCCCcCCCc
Q 041786 214 DEAFRLLCNLVEDGHKLFPSL 234 (260)
Q Consensus 214 ~~a~~~~~~m~~~~~~p~~~~ 234 (260)
..|..++++|.+.|..-|..-
T Consensus 34 Rn~r~lLkkm~~~gWi~W~pg 54 (115)
T PF12793_consen 34 RNARTLLKKMQEEGWITWQPG 54 (115)
T ss_pred HHHHHHHHHHHHCCCeeeeCC
Confidence 467889999999987666554
No 371
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.71 E-value=83 Score=27.63 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=57.3
Q ss_pred HHHHHhcccCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc---HHHH-HHHHHHH-------HHHHhC
Q 041786 49 WKTIELMKPDSLSVFPQT--LSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC---VLLY-NSLHVCF-------VRMIRK 115 (260)
Q Consensus 49 ~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~-~~li~~~-------~~m~~~ 115 (260)
+++...+.++|...|..| =++=+.+-|=.|+++-...+++ .|.-|. ..-. ..+|.|| +.+.+.
T Consensus 97 l~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE----~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~ 172 (615)
T KOG0508|consen 97 LEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVE----HGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ 172 (615)
T ss_pred HHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHH----cCCCCcccccCCCeeEEeeeccCchHHHHHHHHh
Confidence 455555555555544333 3244555555666665555553 343332 2222 2334555 778888
Q ss_pred CCCCCHhhH--HHHHHHHhccCCHHHHHHHHH
Q 041786 116 GFVPDKRTH--TILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 116 g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~ 145 (260)
|..++..++ |+.+.-|+.+|.+|-.+.++.
T Consensus 173 gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 173 GADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred CCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 999988777 789999999999988877665
No 372
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.69 E-value=5.2e+02 Score=21.84 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCC--------CCCHH-HHHHHHHHHHHCCCCCChhc----hH-HHHHHHHhcCCCCCC-----cch
Q 041786 137 MREAQEFLQELSDKGF--------NPPVR-SAKQMVNKMIKQGSVPDLET----FN-SLIETICKSGELGLC-----ADV 197 (260)
Q Consensus 137 ~~~a~~~~~~m~~~~~--------~~~~~-~a~~l~~~m~~~g~~p~~~~----~~-~li~~~~~~~~~~~~-----~~~ 197 (260)
.++..++++++.+.|+ .|-.. ...++++...+.|+.....| .+ -.+..+.+.|-..+. ++.
T Consensus 48 ~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~ 127 (378)
T PRK05301 48 TEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDP 127 (378)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCH
Confidence 4455556665555442 22211 34566666666665433222 22 345566666542221 123
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----ccHHHHHHHHHHHHhcCC
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----GQFDDAFCFFSEMQIKTH 252 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----g~~~~a~~~~~~m~~~g~ 252 (260)
.++..+ . ...|.++.+.+.++.+++.|+.....+ .+.++..++++-+.+.|+
T Consensus 128 e~~d~i-r--g~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv 183 (378)
T PRK05301 128 ELNDRL-A--GTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGA 183 (378)
T ss_pred HHHHHH-c--CCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCC
Confidence 334322 1 122578888888888888887544333 556666666665555554
No 373
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=20.67 E-value=5.3e+02 Score=21.86 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHhccCCHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHT--ILVNAWCSSGKMREAQE 142 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~ 142 (260)
.....++...-+.++.++|++.++++.+. . +.--.|+.+.|. .....+...|+..++..
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~------------------~-~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk 136 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEK------------------L-KEYKEPDAVIYILTEIARLKLEINDLKEIKK 136 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH------------------H-HhhccchhHHHHHHHHHHHHHhcccHHHHHH
Confidence 34455566666777899999999998862 2 222346777664 44556667899999999
Q ss_pred HHHHHHh-----CCCCCCHH
Q 041786 143 FLQELSD-----KGFNPPVR 157 (260)
Q Consensus 143 ~~~~m~~-----~~~~~~~~ 157 (260)
++++.++ .++.+++.
T Consensus 137 ~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 137 LLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHhcccCCChhhh
Confidence 9988876 46666544
No 374
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=20.65 E-value=1.8e+02 Score=18.47 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=30.8
Q ss_pred cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.|+.++|+..|+.-.. ++..|+...+. ..+....++.|.++-+.|..
T Consensus 21 ~g~~e~Al~~Y~~gi~-------------------~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLR-------------------ELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHH-------------------HHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 4788888888887664 34444433332 33455568888888888875
No 375
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=20.29 E-value=2.6e+02 Score=22.12 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=17.6
Q ss_pred hhhhccHHHHHHHHHHHHHCCCCcCC
Q 041786 207 VSKEFMIDEAFRLLCNLVEDGHKLFP 232 (260)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~p~~ 232 (260)
+...+++++|..++++..+.|+...+
T Consensus 32 ~v~k~d~~~al~i~~~v~~~g~~vs~ 57 (236)
T PF01995_consen 32 YVDKEDLDEALEIFKEVFKAGLSVSP 57 (236)
T ss_dssp EEEGGGHHHHHHHHHHHHHTT-SSSS
T ss_pred EecHHHHHHHHHHHHHHHHcCCcccC
Confidence 45567788888888888777764433
No 376
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=2.2e+02 Score=21.70 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC
Q 041786 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP 119 (260)
Q Consensus 61 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p 119 (260)
.+....|+-++...+...-+++-.-+++.+...+.-|-...||.+ +.||.|
T Consensus 52 e~g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvF--------reGIrP 102 (217)
T COG5053 52 EDGLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVF--------REGIRP 102 (217)
T ss_pred ccchhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHH--------HcCCCc
Confidence 456778999999999999999999999999988887777777766 566666
Done!