Query 041786
Match_columns 260
No_of_seqs 202 out of 1839
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.3E-31 8E-36 229.3 18.0 169 47-234 8-212 (501)
2 4g26_A Pentatricopeptide repea 100.0 1E-27 3.5E-32 206.7 23.1 157 32-188 29-223 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 3E-21 1E-25 173.0 12.1 132 63-255 126-265 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-19 5.8E-24 161.9 9.4 140 31-211 129-286 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 7.1E-14 2.4E-18 122.7 23.4 205 41-250 284-545 (597)
6 2xpi_A Anaphase-promoting comp 99.6 2E-13 6.7E-18 119.8 22.7 218 27-250 303-579 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.1 3.2E-08 1.1E-12 82.1 20.9 107 121-249 237-367 (388)
8 2y4t_A DNAJ homolog subfamily 99.0 2E-07 6.7E-12 78.6 21.2 227 15-249 43-357 (450)
9 1w3b_A UDP-N-acetylglucosamine 99.0 3.3E-07 1.1E-11 75.9 22.2 124 121-249 169-333 (388)
10 2y4t_A DNAJ homolog subfamily 98.9 1.2E-07 3.9E-12 80.0 19.4 208 17-250 11-286 (450)
11 4eqf_A PEX5-related protein; a 98.8 6.7E-07 2.3E-11 73.3 17.7 182 43-250 79-310 (365)
12 3mkr_A Coatomer subunit epsilo 98.7 1.7E-06 5.7E-11 69.2 19.0 184 35-225 40-263 (291)
13 3hym_B Cell division cycle pro 98.7 3.4E-06 1.2E-10 67.6 20.4 126 121-249 125-298 (330)
14 1fch_A Peroxisomal targeting s 98.7 2.8E-06 9.5E-11 69.5 20.1 182 43-250 78-314 (368)
15 3uq3_A Heat shock protein STI1 98.7 5.7E-07 2E-11 69.5 14.8 190 35-249 11-235 (258)
16 2gw1_A Mitochondrial precursor 98.7 7.2E-06 2.4E-10 70.0 22.4 82 12-94 20-103 (514)
17 3hym_B Cell division cycle pro 98.6 1.6E-05 5.6E-10 63.6 21.3 199 27-250 20-265 (330)
18 3cv0_A Peroxisome targeting si 98.6 6.2E-06 2.1E-10 66.0 18.7 186 38-250 30-269 (327)
19 2ho1_A Type 4 fimbrial biogene 98.6 1.6E-05 5.6E-10 61.3 20.0 171 36-250 44-238 (252)
20 3mkr_A Coatomer subunit epsilo 98.6 2.3E-06 7.9E-11 68.4 14.7 198 40-250 10-264 (291)
21 3ieg_A DNAJ homolog subfamily 98.5 2.4E-05 8.2E-10 63.2 20.7 189 38-250 12-263 (359)
22 1b89_A Protein (clathrin heavy 98.5 3.4E-07 1.2E-11 76.7 9.3 177 34-224 37-234 (449)
23 3cv0_A Peroxisome targeting si 98.5 1.4E-05 4.7E-10 64.0 18.3 211 14-247 37-312 (327)
24 2vq2_A PILW, putative fimbrial 98.5 9.5E-06 3.3E-10 61.1 16.4 171 36-250 15-211 (225)
25 2ho1_A Type 4 fimbrial biogene 98.5 6.6E-06 2.3E-10 63.5 15.5 142 64-250 37-204 (252)
26 4eqf_A PEX5-related protein; a 98.5 1.5E-05 5E-10 65.3 18.2 189 15-226 82-310 (365)
27 2q7f_A YRRB protein; TPR, prot 98.5 2.5E-06 8.5E-11 65.4 12.7 54 39-93 33-86 (243)
28 1fch_A Peroxisomal targeting s 98.4 2.6E-05 8.8E-10 63.6 18.1 192 13-226 79-314 (368)
29 1b89_A Protein (clathrin heavy 98.4 7.1E-08 2.4E-12 80.8 2.2 145 40-223 14-174 (449)
30 2gw1_A Mitochondrial precursor 98.4 3.5E-05 1.2E-09 65.7 19.0 189 35-249 243-477 (514)
31 2pl2_A Hypothetical conserved 98.4 2.1E-05 7.1E-10 59.8 15.7 166 34-248 10-212 (217)
32 2ond_A Cleavage stimulation fa 98.4 6.8E-05 2.3E-09 60.1 19.5 80 46-150 81-163 (308)
33 2vq2_A PILW, putative fimbrial 98.4 2.5E-05 8.5E-10 58.8 15.6 143 63-250 7-176 (225)
34 1xnf_A Lipoprotein NLPI; TPR, 98.4 8.6E-05 2.9E-09 57.8 18.7 167 35-227 49-245 (275)
35 2q7f_A YRRB protein; TPR, prot 98.3 2.2E-05 7.7E-10 59.9 14.8 150 33-226 61-222 (243)
36 3fp2_A TPR repeat-containing p 98.3 0.00012 4.1E-09 62.8 20.8 231 14-250 41-407 (537)
37 3as5_A MAMA; tetratricopeptide 98.3 7.2E-05 2.4E-09 54.3 16.8 88 38-149 17-104 (186)
38 3ieg_A DNAJ homolog subfamily 98.3 9.6E-05 3.3E-09 59.6 19.0 232 12-250 17-335 (359)
39 3fp2_A TPR repeat-containing p 98.3 0.00015 5.1E-09 62.3 20.5 106 39-149 253-372 (537)
40 3vtx_A MAMA; tetratricopeptide 98.3 5E-05 1.7E-09 55.7 15.0 141 63-249 4-169 (184)
41 2fo7_A Synthetic consensus TPR 98.3 3.7E-05 1.3E-09 52.5 13.3 62 65-149 2-63 (136)
42 3edt_B KLC 2, kinesin light ch 98.3 2.1E-05 7.2E-10 61.3 13.0 153 47-226 26-198 (283)
43 3as5_A MAMA; tetratricopeptide 98.2 3.9E-05 1.3E-09 55.7 13.3 142 64-250 8-173 (186)
44 2pl2_A Hypothetical conserved 98.2 3.6E-05 1.2E-09 58.5 13.5 145 61-250 2-180 (217)
45 1xnf_A Lipoprotein NLPI; TPR, 98.2 0.00012 4.2E-09 56.9 15.7 181 44-250 20-244 (275)
46 3uq3_A Heat shock protein STI1 98.2 0.00018 6.3E-09 55.1 16.3 189 14-226 21-236 (258)
47 3nf1_A KLC 1, kinesin light ch 98.1 8.9E-05 3.1E-09 58.7 13.7 165 34-225 32-223 (311)
48 3nf1_A KLC 1, kinesin light ch 98.1 0.00015 5.2E-09 57.3 14.7 181 33-225 73-306 (311)
49 4abn_A Tetratricopeptide repea 98.0 1.7E-05 5.9E-10 67.8 8.9 172 47-244 86-315 (474)
50 2ooe_A Cleavage stimulation fa 98.0 0.0016 5.4E-08 56.2 20.1 159 47-249 304-491 (530)
51 1ouv_A Conserved hypothetical 98.0 0.0037 1.3E-07 48.7 20.7 178 41-251 18-252 (273)
52 3edt_B KLC 2, kinesin light ch 97.9 0.0011 3.7E-08 51.4 17.3 181 33-225 47-280 (283)
53 3vtx_A MAMA; tetratricopeptide 97.9 0.0013 4.4E-08 47.9 16.5 149 32-226 8-170 (184)
54 4gyw_A UDP-N-acetylglucosamine 97.9 0.00013 4.5E-09 65.6 12.7 138 64-248 9-172 (723)
55 4abn_A Tetratricopeptide repea 97.9 0.00024 8.1E-09 60.7 13.4 107 121-250 137-287 (474)
56 3u4t_A TPR repeat-containing p 97.8 0.0011 3.9E-08 51.3 15.7 148 38-226 12-171 (272)
57 2fo7_A Synthetic consensus TPR 97.8 0.0003 1E-08 47.8 10.0 107 123-250 3-132 (136)
58 3mv2_B Coatomer subunit epsilo 97.7 0.00063 2.2E-08 54.5 12.5 134 48-225 85-239 (310)
59 3u4t_A TPR repeat-containing p 97.7 0.0089 3E-07 46.1 19.6 195 12-227 17-251 (272)
60 2ond_A Cleavage stimulation fa 97.7 0.0034 1.2E-07 50.0 16.3 148 34-226 104-270 (308)
61 4gyw_A UDP-N-acetylglucosamine 97.7 0.0011 3.6E-08 59.7 14.4 146 33-225 13-173 (723)
62 1hh8_A P67PHOX, NCF-2, neutrop 97.6 0.0042 1.4E-07 46.2 15.1 47 197-245 121-167 (213)
63 4i17_A Hypothetical protein; T 97.6 0.0073 2.5E-07 45.5 16.4 88 38-149 16-104 (228)
64 1na0_A Designed protein CTPR3; 97.6 0.0031 1E-07 42.0 12.8 99 64-227 9-107 (125)
65 4a1s_A PINS, partner of inscut 97.5 0.0008 2.7E-08 55.6 11.2 73 177-249 265-371 (411)
66 1ouv_A Conserved hypothetical 97.5 0.021 7.2E-07 44.2 20.6 182 14-227 22-252 (273)
67 4i17_A Hypothetical protein; T 97.5 0.0066 2.3E-07 45.7 14.9 123 62-226 5-146 (228)
68 2h6f_A Protein farnesyltransfe 97.4 0.0074 2.5E-07 49.9 15.4 182 39-247 107-344 (382)
69 3ro2_A PINS homolog, G-protein 97.4 0.0022 7.7E-08 50.8 11.5 53 39-92 15-71 (338)
70 1na0_A Designed protein CTPR3; 97.3 0.0095 3.3E-07 39.5 12.9 90 37-150 17-106 (125)
71 4a1s_A PINS, partner of inscut 97.3 0.0021 7.1E-08 53.1 11.2 196 38-249 57-331 (411)
72 3mv2_B Coatomer subunit epsilo 97.3 0.013 4.4E-07 46.9 15.1 166 36-250 107-305 (310)
73 3urz_A Uncharacterized protein 97.3 0.0038 1.3E-07 46.7 11.6 137 43-226 18-186 (208)
74 3sz7_A HSC70 cochaperone (SGT) 97.3 0.012 4.1E-07 41.9 13.9 123 63-252 10-136 (164)
75 2r5s_A Uncharacterized protein 97.3 0.0033 1.1E-07 45.6 10.9 148 66-249 8-172 (176)
76 3qou_A Protein YBBN; thioredox 97.3 0.0046 1.6E-07 48.9 12.1 151 62-247 115-281 (287)
77 3sf4_A G-protein-signaling mod 97.3 0.002 7E-08 52.8 10.3 54 38-92 18-75 (406)
78 2lni_A Stress-induced-phosphop 97.3 0.0099 3.4E-07 40.1 12.3 101 61-226 13-113 (133)
79 2kck_A TPR repeat; tetratricop 97.2 0.0071 2.4E-07 39.4 11.1 102 63-227 5-107 (112)
80 2vgx_A Chaperone SYCD; alterna 97.2 0.01 3.4E-07 41.8 12.3 99 63-226 20-118 (148)
81 2h6f_A Protein farnesyltransfe 97.2 0.016 5.4E-07 48.0 15.0 163 59-247 91-302 (382)
82 1qqe_A Vesicular transport pro 97.2 0.0086 2.9E-07 47.3 13.0 151 66-249 39-227 (292)
83 3gyz_A Chaperone protein IPGC; 97.2 0.0097 3.3E-07 42.3 12.0 101 61-227 32-134 (151)
84 2vsy_A XCC0866; transferase, g 97.2 0.0083 2.8E-07 52.2 13.7 87 39-149 33-119 (568)
85 2dba_A Smooth muscle cell asso 97.2 0.018 6.3E-07 39.6 13.1 100 62-227 26-129 (148)
86 1a17_A Serine/threonine protei 97.2 0.024 8.4E-07 39.8 14.0 63 64-149 13-75 (166)
87 1xi4_A Clathrin heavy chain; a 97.1 0.013 4.4E-07 56.0 15.0 153 63-223 1133-1306(1630)
88 4g1t_A Interferon-induced prot 97.1 0.016 5.4E-07 48.7 14.7 102 47-151 231-364 (472)
89 3ulq_A Response regulator aspa 97.1 0.0087 3E-07 49.1 12.8 193 39-249 113-367 (383)
90 3rjv_A Putative SEL1 repeat pr 97.1 0.037 1.3E-06 41.4 15.3 45 47-94 4-48 (212)
91 2xcb_A PCRH, regulatory protei 97.1 0.014 4.9E-07 40.5 12.2 98 64-226 18-115 (142)
92 3gw4_A Uncharacterized protein 97.1 0.017 5.7E-07 42.3 12.9 85 46-149 9-94 (203)
93 1elw_A TPR1-domain of HOP; HOP 97.1 0.016 5.6E-07 37.9 11.7 100 63-227 3-102 (118)
94 4g1t_A Interferon-induced prot 97.1 0.078 2.7E-06 44.4 18.4 16 235-250 348-363 (472)
95 2yhc_A BAMD, UPF0169 lipoprote 97.1 0.032 1.1E-06 42.1 14.5 158 63-251 3-214 (225)
96 2r5s_A Uncharacterized protein 97.0 0.028 9.6E-07 40.5 13.6 142 38-224 15-171 (176)
97 3q49_B STIP1 homology and U bo 97.0 0.03 1E-06 38.0 13.2 100 62-226 7-106 (137)
98 3qky_A Outer membrane assembly 97.0 0.043 1.5E-06 42.2 15.4 92 39-150 25-126 (261)
99 1hz4_A MALT regulatory protein 97.0 0.069 2.4E-06 43.3 17.3 177 40-249 25-243 (373)
100 4gco_A Protein STI-1; structur 97.0 0.03 1E-06 38.1 12.8 98 64-226 13-110 (126)
101 1xi4_A Clathrin heavy chain; a 97.0 0.028 9.5E-07 53.7 15.9 175 35-223 1055-1247(1630)
102 3gyz_A Chaperone protein IPGC; 97.0 0.013 4.4E-07 41.6 11.0 90 37-151 44-134 (151)
103 1elr_A TPR2A-domain of HOP; HO 97.0 0.017 5.7E-07 38.7 11.3 105 64-227 4-109 (131)
104 3qky_A Outer membrane assembly 97.0 0.044 1.5E-06 42.1 14.9 64 63-150 14-81 (261)
105 2vyi_A SGTA protein; chaperone 97.0 0.034 1.2E-06 37.0 12.7 88 38-149 21-108 (131)
106 3qou_A Protein YBBN; thioredox 96.9 0.024 8.1E-07 44.7 13.3 148 33-223 121-281 (287)
107 3sf4_A G-protein-signaling mod 96.9 0.0076 2.6E-07 49.3 10.7 204 30-248 48-334 (406)
108 2yhc_A BAMD, UPF0169 lipoprote 96.9 0.073 2.5E-06 40.0 15.5 182 39-228 14-215 (225)
109 3upv_A Heat shock protein STI1 96.9 0.033 1.1E-06 37.5 12.2 98 64-226 4-101 (126)
110 2kck_A TPR repeat; tetratricop 96.9 0.026 8.8E-07 36.5 11.4 94 35-150 12-106 (112)
111 2lni_A Stress-induced-phosphop 96.9 0.032 1.1E-06 37.4 12.2 87 39-149 26-112 (133)
112 2vyi_A SGTA protein; chaperone 96.9 0.035 1.2E-06 36.9 12.2 99 63-226 11-109 (131)
113 4gcn_A Protein STI-1; structur 96.8 0.016 5.3E-07 39.6 10.1 102 65-226 9-112 (127)
114 3ro2_A PINS homolog, G-protein 96.8 0.017 5.8E-07 45.6 11.6 27 122-148 224-250 (338)
115 2ooe_A Cleavage stimulation fa 96.7 0.025 8.4E-07 48.7 12.8 147 35-226 327-492 (530)
116 3n71_A Histone lysine methyltr 96.7 0.019 6.3E-07 49.2 11.6 71 59-148 294-378 (490)
117 2xev_A YBGF; tetratricopeptide 96.7 0.046 1.6E-06 36.7 11.7 97 68-227 6-106 (129)
118 1p5q_A FKBP52, FK506-binding p 96.7 0.028 9.7E-07 45.4 12.2 132 63-223 146-291 (336)
119 4gco_A Protein STI-1; structur 96.6 0.051 1.8E-06 36.9 11.6 90 36-149 20-109 (126)
120 3q15_A PSP28, response regulat 96.6 0.14 5E-06 41.6 16.3 190 41-248 113-363 (378)
121 1elr_A TPR2A-domain of HOP; HO 96.6 0.022 7.6E-07 38.0 9.7 92 38-150 13-108 (131)
122 1hz4_A MALT regulatory protein 96.6 0.13 4.6E-06 41.6 15.9 174 39-248 103-320 (373)
123 2vgx_A Chaperone SYCD; alterna 96.6 0.02 6.9E-07 40.2 9.3 90 35-149 27-117 (148)
124 4ga2_A E3 SUMO-protein ligase 96.6 0.019 6.4E-07 40.4 9.1 91 34-149 36-128 (150)
125 2xm6_A Protein corresponding t 96.6 0.29 1E-05 41.4 21.0 196 42-251 56-326 (490)
126 2pzi_A Probable serine/threoni 96.5 0.057 1.9E-06 48.2 14.0 142 40-225 402-562 (681)
127 3ro3_A PINS homolog, G-protein 96.5 0.023 7.9E-07 39.4 9.5 68 64-149 9-77 (164)
128 1hh8_A P67PHOX, NCF-2, neutrop 96.5 0.15 5.1E-06 37.5 14.3 85 39-150 16-100 (213)
129 2xev_A YBGF; tetratricopeptide 96.5 0.087 3E-06 35.2 11.9 87 39-150 12-105 (129)
130 1hxi_A PEX5, peroxisome target 96.5 0.055 1.9E-06 36.4 10.7 95 66-226 19-114 (121)
131 2e2e_A Formate-dependent nitri 96.5 0.14 4.8E-06 36.6 13.8 115 47-227 28-145 (177)
132 1a17_A Serine/threonine protei 96.4 0.035 1.2E-06 39.0 10.0 106 121-248 13-144 (166)
133 2dba_A Smooth muscle cell asso 96.4 0.11 3.8E-06 35.4 12.4 89 37-150 36-128 (148)
134 2xcb_A PCRH, regulatory protei 96.4 0.061 2.1E-06 37.1 10.8 88 38-149 27-114 (142)
135 1qqe_A Vesicular transport pro 96.3 0.071 2.4E-06 41.9 12.0 156 37-225 45-227 (292)
136 2c2l_A CHIP, carboxy terminus 96.3 0.11 3.8E-06 40.7 13.0 63 63-149 3-66 (281)
137 2e2e_A Formate-dependent nitri 96.3 0.14 4.8E-06 36.5 12.7 113 14-150 26-144 (177)
138 2qfc_A PLCR protein; TPR, HTH, 96.3 0.16 5.4E-06 39.8 14.0 129 65-226 76-225 (293)
139 4f3v_A ESX-1 secretion system 96.2 0.062 2.1E-06 42.3 11.0 56 66-145 104-159 (282)
140 3sz7_A HSC70 cochaperone (SGT) 96.2 0.078 2.7E-06 37.5 10.8 89 37-149 19-107 (164)
141 2ifu_A Gamma-SNAP; membrane fu 96.2 0.063 2.2E-06 42.6 11.3 28 65-92 37-64 (307)
142 3ulq_A Response regulator aspa 96.2 0.077 2.6E-06 43.3 12.1 157 64-225 184-367 (383)
143 4ga2_A E3 SUMO-protein ligase 96.2 0.048 1.6E-06 38.3 9.4 77 47-149 15-93 (150)
144 3q15_A PSP28, response regulat 96.1 0.1 3.6E-06 42.5 12.6 101 120-225 260-364 (378)
145 3k9i_A BH0479 protein; putativ 96.1 0.017 5.9E-07 38.5 6.6 80 47-149 8-89 (117)
146 2pzi_A Probable serine/threoni 96.1 0.083 2.8E-06 47.2 12.7 133 13-148 406-561 (681)
147 2c2l_A CHIP, carboxy terminus 96.1 0.029 1E-06 44.0 8.8 87 38-149 13-100 (281)
148 3u3w_A Transcriptional activat 96.1 0.35 1.2E-05 37.8 16.0 86 43-149 89-183 (293)
149 3upv_A Heat shock protein STI1 96.1 0.14 4.8E-06 34.2 11.3 87 39-149 14-100 (126)
150 3u3w_A Transcriptional activat 96.1 0.37 1.3E-05 37.7 18.4 105 126-248 120-264 (293)
151 4gcn_A Protein STI-1; structur 96.0 0.08 2.7E-06 35.9 9.6 96 35-149 14-111 (127)
152 3q49_B STIP1 homology and U bo 96.0 0.15 5.3E-06 34.3 11.2 91 35-149 15-105 (137)
153 1elw_A TPR1-domain of HOP; HOP 96.0 0.17 5.8E-06 32.7 12.8 89 38-150 13-101 (118)
154 2kat_A Uncharacterized protein 95.9 0.1 3.6E-06 34.3 9.9 79 47-149 3-81 (115)
155 2vsy_A XCC0866; transferase, g 95.9 0.19 6.5E-06 43.5 13.8 79 47-150 7-86 (568)
156 3urz_A Uncharacterized protein 95.9 0.23 7.8E-06 36.8 12.5 114 35-150 60-186 (208)
157 2l6j_A TPR repeat-containing p 95.8 0.12 4E-06 33.4 9.7 65 63-150 3-67 (111)
158 1hxi_A PEX5, peroxisome target 95.8 0.072 2.4E-06 35.8 8.5 87 38-149 26-113 (121)
159 1p5q_A FKBP52, FK506-binding p 95.7 0.12 4E-06 41.7 11.0 94 33-149 151-258 (336)
160 4e6h_A MRNA 3'-END-processing 95.7 0.75 2.6E-05 41.0 16.6 90 47-150 361-463 (679)
161 3ma5_A Tetratricopeptide repea 95.6 0.11 3.9E-06 33.3 8.7 63 63-149 6-69 (100)
162 1na3_A Designed protein CTPR2; 95.6 0.21 7.1E-06 30.8 9.8 64 63-149 8-71 (91)
163 2hr2_A Hypothetical protein; a 95.5 0.29 9.9E-06 34.9 10.9 118 65-226 12-131 (159)
164 3gw4_A Uncharacterized protein 95.4 0.32 1.1E-05 35.1 11.7 137 35-225 32-175 (203)
165 2qfc_A PLCR protein; TPR, HTH, 95.4 0.72 2.5E-05 36.0 17.2 152 39-224 85-264 (293)
166 2ifu_A Gamma-SNAP; membrane fu 95.3 0.15 5.2E-06 40.3 10.3 127 64-224 76-222 (307)
167 4b4t_Q 26S proteasome regulato 95.3 0.36 1.2E-05 39.8 13.0 168 72-248 12-202 (434)
168 2fbn_A 70 kDa peptidylprolyl i 95.3 0.22 7.5E-06 36.4 10.4 113 64-226 38-151 (198)
169 3k9i_A BH0479 protein; putativ 95.3 0.056 1.9E-06 35.9 6.4 88 76-226 2-90 (117)
170 3ro3_A PINS homolog, G-protein 95.1 0.079 2.7E-06 36.6 7.2 114 121-249 9-157 (164)
171 2xm6_A Protein corresponding t 95.1 1.3 4.5E-05 37.3 25.6 197 42-250 92-360 (490)
172 2if4_A ATFKBP42; FKBP-like, al 95.1 0.11 3.9E-06 41.9 8.8 136 64-249 179-327 (338)
173 3qww_A SET and MYND domain-con 95.0 0.24 8.1E-06 41.6 10.7 95 77-225 311-410 (433)
174 3rkv_A Putative peptidylprolyl 94.7 0.5 1.7E-05 33.1 10.6 110 64-226 11-126 (162)
175 4f3v_A ESX-1 secretion system 94.7 1.2 4.2E-05 34.9 13.8 127 37-227 110-238 (282)
176 4e6h_A MRNA 3'-END-processing 94.4 0.8 2.7E-05 40.8 13.2 163 63-250 342-570 (679)
177 3n71_A Histone lysine methyltr 94.4 0.13 4.3E-06 44.1 7.7 132 43-226 323-464 (490)
178 2fbn_A 70 kDa peptidylprolyl i 94.3 0.79 2.7E-05 33.2 11.3 90 37-149 46-150 (198)
179 1kt0_A FKBP51, 51 kDa FK506-bi 94.2 0.52 1.8E-05 39.7 11.2 78 64-149 268-345 (457)
180 3qww_A SET and MYND domain-con 94.2 0.15 5.1E-06 42.9 7.7 88 44-148 313-409 (433)
181 1wao_1 Serine/threonine protei 94.1 0.23 8E-06 42.2 8.7 55 72-149 14-68 (477)
182 3qwp_A SET and MYND domain-con 94.0 0.52 1.8E-05 39.5 10.5 103 69-225 292-399 (429)
183 1kt0_A FKBP51, 51 kDa FK506-bi 93.4 0.65 2.2E-05 39.1 10.3 92 35-149 274-379 (457)
184 4b4t_Q 26S proteasome regulato 93.3 2.9 9.9E-05 34.2 17.6 145 66-225 57-244 (434)
185 1ihg_A Cyclophilin 40; ppiase 93.0 1.3 4.4E-05 36.2 11.2 112 65-226 224-336 (370)
186 3ma5_A Tetratricopeptide repea 93.0 0.75 2.6E-05 29.3 8.1 65 120-226 6-70 (100)
187 3rkv_A Putative peptidylprolyl 92.7 1.1 3.7E-05 31.3 9.3 64 64-150 63-126 (162)
188 1wao_1 Serine/threonine protei 91.9 1.1 3.8E-05 38.0 9.8 84 42-149 19-102 (477)
189 3qwp_A SET and MYND domain-con 91.3 0.25 8.4E-06 41.5 5.0 89 43-148 301-398 (429)
190 3rjv_A Putative SEL1 repeat pr 91.2 3.4 0.00012 30.4 15.0 58 33-94 22-83 (212)
191 2hr2_A Hypothetical protein; a 91.0 2.8 9.7E-05 29.7 9.6 94 39-149 21-130 (159)
192 3mkq_A Coatomer beta'-subunit; 90.9 3.3 0.00011 37.1 12.4 129 66-223 631-762 (814)
193 2l6j_A TPR repeat-containing p 90.8 1.6 5.5E-05 27.6 7.9 66 119-226 2-67 (111)
194 2kc7_A BFR218_protein; tetratr 90.1 1.7 5.9E-05 27.1 7.4 57 70-150 6-64 (99)
195 1pc2_A Mitochondria fission pr 89.8 3.9 0.00013 28.8 9.8 94 47-166 16-114 (152)
196 3mkq_B Coatomer subunit alpha; 89.5 2.3 7.9E-05 30.7 8.1 125 72-248 13-142 (177)
197 1ihg_A Cyclophilin 40; ppiase 89.4 3.7 0.00013 33.4 10.4 63 63-149 272-335 (370)
198 2kc7_A BFR218_protein; tetratr 89.1 0.92 3.1E-05 28.4 5.4 78 127-248 6-88 (99)
199 2if4_A ATFKBP42; FKBP-like, al 89.1 2.2 7.6E-05 34.2 8.8 87 38-149 188-292 (338)
200 1na3_A Designed protein CTPR2; 89.0 2.5 8.6E-05 25.5 7.6 64 121-226 9-72 (91)
201 2kat_A Uncharacterized protein 88.1 1.6 5.5E-05 28.2 6.3 60 32-92 22-81 (115)
202 3dra_A Protein farnesyltransfe 87.9 8.7 0.0003 30.4 18.6 67 158-225 204-286 (306)
203 1v54_E Cytochrome C oxidase po 87.8 2.2 7.6E-05 27.7 6.2 38 112-149 36-73 (109)
204 1zu2_A Mitochondrial import re 87.0 2.3 7.8E-05 30.2 6.7 78 47-149 20-119 (158)
205 2v5f_A Prolyl 4-hydroxylase su 86.8 4.5 0.00015 25.9 9.5 70 62-149 3-74 (104)
206 2uy1_A Cleavage stimulation fa 86.4 14 0.00049 31.3 15.9 97 48-147 198-312 (493)
207 3u64_A Protein TP_0956; tetrat 85.7 12 0.00039 29.6 10.8 91 117-248 192-296 (301)
208 3e4b_A ALGK; tetratricopeptide 84.8 16 0.00055 30.4 18.8 84 66-151 178-281 (452)
209 3u64_A Protein TP_0956; tetrat 84.6 9.5 0.00033 30.1 9.6 85 47-157 181-278 (301)
210 1v54_E Cytochrome C oxidase po 84.2 6.6 0.00023 25.5 8.6 70 47-117 28-98 (109)
211 3mkq_A Coatomer beta'-subunit; 84.1 17 0.00057 32.5 12.6 47 40-92 663-709 (814)
212 2y69_E Cytochrome C oxidase su 82.6 4.8 0.00016 27.7 6.2 39 111-149 78-116 (152)
213 2ff4_A Probable regulatory pro 81.7 10 0.00036 31.0 9.5 58 69-149 176-233 (388)
214 3ly7_A Transcriptional activat 81.5 9.5 0.00033 31.1 8.9 65 61-149 274-338 (372)
215 1klx_A Cysteine rich protein B 81.0 10 0.00035 25.5 13.0 42 47-93 13-54 (138)
216 3mkq_B Coatomer subunit alpha; 78.2 17 0.00057 26.2 8.8 96 37-146 13-114 (177)
217 1wy6_A Hypothetical protein ST 77.3 15 0.00053 25.4 7.8 34 195-228 123-156 (172)
218 3bee_A Putative YFRE protein; 76.9 11 0.00038 23.6 9.1 66 62-151 4-73 (93)
219 1klx_A Cysteine rich protein B 76.4 15 0.00051 24.7 13.2 106 17-151 14-127 (138)
220 4aez_C MAD3, mitotic spindle c 76.1 16 0.00056 27.3 8.0 87 13-99 95-185 (223)
221 3lpz_A GET4 (YOR164C homolog); 75.6 30 0.001 27.8 10.1 15 235-249 201-215 (336)
222 2y69_E Cytochrome C oxidase su 75.1 18 0.0006 24.9 9.5 87 30-117 49-141 (152)
223 1wdy_A 2-5A-dependent ribonucl 72.7 28 0.00094 26.2 9.7 91 50-145 19-126 (285)
224 2ff4_A Probable regulatory pro 72.3 22 0.00075 29.1 8.8 57 35-92 177-233 (388)
225 2uy1_A Cleavage stimulation fa 71.9 45 0.0015 28.2 11.4 30 196-225 383-412 (493)
226 2wvi_A Mitotic checkpoint seri 71.8 24 0.00082 25.0 8.0 88 13-100 41-132 (164)
227 4a1g_A Mitotic checkpoint seri 71.0 24 0.00081 24.7 8.4 85 14-98 47-135 (152)
228 1wy6_A Hypothetical protein ST 69.8 25 0.00085 24.4 8.6 37 117-153 121-157 (172)
229 3eu9_A Huntingtin-interacting 69.5 30 0.001 25.2 9.8 40 50-89 23-64 (240)
230 3dra_A Protein farnesyltransfe 69.5 39 0.0013 26.6 11.3 101 47-149 164-286 (306)
231 3ly7_A Transcriptional activat 69.0 46 0.0016 27.1 12.7 121 61-226 191-339 (372)
232 1k1a_A B-cell lymphoma 3-encod 62.3 26 0.00089 25.6 6.9 16 131-146 86-101 (241)
233 2fu4_A Ferric uptake regulatio 58.1 28 0.00095 20.9 6.2 59 112-171 8-67 (83)
234 1mzb_A Ferric uptake regulatio 53.3 49 0.0017 22.3 6.6 59 112-171 9-68 (136)
235 3ffl_A Anaphase-promoting comp 49.7 67 0.0023 22.8 6.9 71 57-148 11-90 (167)
236 3eyy_A Putative iron uptake re 49.5 47 0.0016 22.7 5.9 58 112-171 10-67 (145)
237 3lvg_A Clathrin heavy chain 1; 49.3 2.7 9.1E-05 36.0 -0.7 31 194-224 196-226 (624)
238 3mwm_A ZUR, putative metal upt 48.5 32 0.0011 23.4 4.9 46 126-171 18-63 (139)
239 3aji_A 26S proteasome non-ATPa 48.4 74 0.0025 22.9 9.4 22 206-231 178-199 (231)
240 2o03_A Probable zinc uptake re 47.9 32 0.0011 23.1 4.8 45 127-171 16-60 (131)
241 4gns_B Protein CSD3, chitin bi 46.7 96 0.0033 28.0 8.7 32 117-148 366-398 (754)
242 4b4t_P 26S proteasome regulato 46.1 1.3E+02 0.0044 25.0 10.4 133 116-248 51-204 (445)
243 4gns_B Protein CSD3, chitin bi 46.0 83 0.0028 28.4 8.2 27 197-223 371-397 (754)
244 3esl_A Checkpoint serine/threo 45.9 87 0.003 23.0 11.0 102 16-117 58-168 (202)
245 1zu2_A Mitochondrial import re 45.5 76 0.0026 22.2 7.7 45 47-93 64-120 (158)
246 2keb_A DNA polymerase subunit 42.4 65 0.0022 20.6 5.4 57 47-105 27-88 (101)
247 3bee_A Putative YFRE protein; 42.0 60 0.0021 20.0 10.0 33 197-229 43-75 (93)
248 4ets_A Ferric uptake regulatio 40.0 55 0.0019 22.9 5.1 60 111-171 23-84 (162)
249 2fe3_A Peroxide operon regulat 40.0 51 0.0017 22.5 4.8 59 112-171 13-71 (145)
250 3kea_A K1L; tropism, ANK repea 38.9 17 0.00058 28.0 2.5 38 51-88 46-83 (285)
251 2xig_A Ferric uptake regulatio 38.5 47 0.0016 22.9 4.5 59 112-171 18-76 (150)
252 2w57_A Ferric uptake regulatio 38.0 50 0.0017 22.7 4.6 60 112-172 8-68 (150)
253 1pc2_A Mitochondria fission pr 36.8 1.1E+02 0.0036 21.4 9.0 46 47-93 53-100 (152)
254 1x60_A Sporulation-specific N- 36.0 60 0.0021 19.2 4.2 43 211-253 18-72 (79)
255 3esl_A Checkpoint serine/threo 35.8 1.3E+02 0.0043 22.2 6.4 51 199-252 117-168 (202)
256 4a1g_A Mitotic checkpoint seri 35.3 37 0.0013 23.7 3.4 40 215-254 83-134 (152)
257 2qq8_A TBC1 domain family memb 35.0 67 0.0023 25.5 5.4 29 159-187 298-326 (334)
258 4h7y_A Dual specificity protei 34.7 1.2E+02 0.004 21.3 6.5 52 45-97 76-127 (161)
259 3ygs_P Procaspase 9; apoptosis 34.6 86 0.0029 19.7 7.4 57 24-84 30-88 (97)
260 2v5f_A Prolyl 4-hydroxylase su 34.4 84 0.0029 19.5 9.8 92 120-250 4-95 (104)
261 1nzn_A CGI-135 protein, fissio 32.7 1.1E+02 0.0038 20.5 10.1 80 62-166 33-117 (126)
262 3tjy_A Effector protein hopab3 32.1 90 0.0031 19.2 6.4 67 68-134 8-76 (94)
263 1x87_A Urocanase protein; stru 31.3 51 0.0018 27.9 4.1 48 209-258 210-257 (551)
264 1uwk_A Urocanate hydratase; hy 31.3 50 0.0017 28.0 4.0 48 209-258 215-262 (557)
265 2wvi_A Mitotic checkpoint seri 31.2 55 0.0019 23.2 3.8 39 216-254 79-129 (164)
266 3q7a_A Farnesyltransferase alp 31.0 2.1E+02 0.007 23.0 19.6 176 45-225 105-330 (349)
267 3hgl_A Effector protein hopab2 31.0 91 0.0031 18.9 6.6 64 68-131 10-75 (85)
268 1zl8_A LIN-7; heterodimer, alp 30.9 35 0.0012 18.7 2.1 24 211-234 7-30 (53)
269 4fhn_B Nucleoporin NUP120; pro 30.2 2.6E+02 0.0088 26.6 9.3 99 127-226 848-967 (1139)
270 2fkn_A Urocanate hydratase; ro 30.2 52 0.0018 27.9 3.9 48 209-258 211-258 (552)
271 1uta_A FTSN, MSGA, cell divisi 30.0 84 0.0029 18.8 4.2 46 211-256 18-75 (81)
272 4b4t_R RPN7, 26S proteasome re 29.3 1.2E+02 0.0041 25.0 6.2 30 64-93 131-160 (429)
273 2bn5_A PSI; nuclear protein, s 28.5 55 0.0019 16.1 2.3 24 202-225 7-30 (33)
274 1uwk_A Urocanate hydratase; hy 28.1 40 0.0014 28.6 2.9 44 134-177 216-262 (557)
275 2wpv_A GET4, UPF0363 protein Y 28.0 2.2E+02 0.0076 22.4 15.8 67 66-134 35-105 (312)
276 1dce_A Protein (RAB geranylger 27.8 2.9E+02 0.01 23.7 10.8 118 12-153 46-176 (567)
277 2yru_A Steroid receptor RNA ac 27.4 72 0.0025 21.1 3.6 45 48-92 45-89 (118)
278 1x87_A Urocanase protein; stru 27.0 41 0.0014 28.5 2.8 44 134-177 211-257 (551)
279 2b7e_A PRE-mRNA processing pro 26.1 25 0.00086 20.1 1.1 31 47-78 4-36 (59)
280 3twr_A Tankyrase-2; ankyrin re 25.9 1E+02 0.0034 20.8 4.6 14 70-83 45-58 (165)
281 2f8y_A Notch homolog 1, transl 25.8 93 0.0032 22.2 4.6 38 51-88 40-79 (223)
282 2fkn_A Urocanate hydratase; ro 25.5 41 0.0014 28.5 2.6 44 134-177 212-258 (552)
283 3e4b_A ALGK; tetratricopeptide 25.3 2.8E+02 0.0096 22.7 21.7 47 44-91 194-244 (452)
284 2dod_A Transcription elongatio 23.6 66 0.0023 19.7 2.7 20 236-255 15-35 (82)
285 4b4t_S RPN3, 26S proteasome re 23.2 3.6E+02 0.012 23.1 12.2 28 64-91 231-258 (523)
286 1wgl_A TOLL-interacting protei 21.7 53 0.0018 18.7 1.9 22 235-256 37-58 (59)
287 4aez_C MAD3, mitotic spindle c 21.4 87 0.003 23.4 3.5 33 199-231 152-184 (223)
288 1yyh_A HN1;, notch 1, ankyrin 21.2 91 0.0031 23.0 3.8 15 204-218 227-241 (253)
289 1oai_A Nuclear RNA export fact 21.2 90 0.0031 17.7 2.8 21 235-255 34-55 (59)
290 2xig_A Ferric uptake regulatio 20.5 2.1E+02 0.0072 19.5 5.4 46 142-190 31-76 (150)
291 2fe3_A Peroxide operon regulat 20.4 2.1E+02 0.007 19.3 6.1 33 158-190 39-71 (145)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.3e-31 Score=229.35 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=138.2
Q ss_pred HHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH----------------
Q 041786 47 SMWKTIELMKPDSLSVFP-QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------------- 109 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---------------- 109 (260)
.+..+.+.+.+++..+.. ..++.+|++|++.|++++|+++|++|.+.|++||..|||+||.++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345566777777766554 457888888888888888888888888888888888888888432
Q ss_pred ------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHH
Q 041786 110 ------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIE 183 (260)
Q Consensus 110 ------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~ 183 (260)
++|.+.|+.||..|||+||++|++.|++++|.++|++|. +.|+.||..||++||.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-------------------~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-------------------AFGIQPRLRSYGPALF 148 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------HTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------HcCCCCccceehHHHH
Confidence 678889999999999999999999999999999988887 4568899999999999
Q ss_pred HHHhcCC-------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc
Q 041786 184 TICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL 234 (260)
Q Consensus 184 ~~~~~~~-------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 234 (260)
+|++.|+ .|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..|
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999998 89999999999999999999999999999999999999999888
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1e-27 Score=206.72 Aligned_cols=157 Identities=9% Similarity=0.071 Sum_probs=145.4
Q ss_pred hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHhhhcCCCCcHHHH
Q 041786 32 ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGL---------IDNAVEVFNKCTAFNCQQCVLLY 102 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~ 102 (260)
....+..+.+.+...+|+++|++|.+.|++||..+||+||++|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566777888888999999999999999999999999999998765 68899999999999999999999
Q ss_pred HHHHHHH-------------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH------------
Q 041786 103 NSLHVCF-------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVR------------ 157 (260)
Q Consensus 103 ~~li~~~-------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------ 157 (260)
|+||.++ ++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 9999655 789999999999999999999999999999999999999999999976
Q ss_pred ----HHHHHHHHHHHCCCCCChhchHHHHHHHHhc
Q 041786 158 ----SAKQMVNKMIKQGSVPDLETFNSLIETICKS 188 (260)
Q Consensus 158 ----~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 188 (260)
+|.++|++|.+.|..|+..||+.++..|+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998863
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=3e-21 Score=173.03 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
-..|||+||++||+.|++++|.++|++|.+ |...|+.||.+|||+||++||+.|++++|.+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~-------------------m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~ 186 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHG-------------------QRQKRKLLTLDMYNAVMLGWARQGAFKELVY 186 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------------------SHHHHTTCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------------HhhcCCCCCHhHHHHHHHHHHhCCCHHHHHH
Confidence 356899999999999999999999999885 4567899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhcc-HHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFM-IDEAFRLLC 221 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~-~~~a~~~~~ 221 (260)
+|++|.+.| +.||+.|||+||.++++.|+ .++|.++|+
T Consensus 187 Lf~eM~~~G-----------------------------------------~~PDvvTYntLI~glcK~G~~~e~A~~Ll~ 225 (1134)
T 3spa_A 187 VLFMVKDAG-----------------------------------------LTPDLLSYAAALQCMGRQDQDAGTIERCLE 225 (1134)
T ss_dssp HHHHHHHTT-----------------------------------------CCCCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcC-----------------------------------------CCCcHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999998643 44666666666677777777 478889999
Q ss_pred HHHHCCCCcCCCc-------ccHHHHHHHHHHHHhcCCCCC
Q 041786 222 NLVEDGHKLFPSL-------GQFDDAFCFFSEMQIKTHPPN 255 (260)
Q Consensus 222 ~m~~~~~~p~~~~-------g~~~~a~~~~~~m~~~g~~p~ 255 (260)
+|.+.|+.||..+ ...+.+++.++++ ..++.|+
T Consensus 226 EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-CCCCCCC
T ss_pred HHHHcCCCCChhhcccccChhhHHHHHHHHHHh-CcccCCC
Confidence 9999999998887 3334455555555 4467765
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=161.89 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=115.2
Q ss_pred hhHHHHHhhhhhcchHHHHHHHHhcc---cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH
Q 041786 31 AERTLNRLNLTLISELSMWKTIELMK---PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107 (260)
Q Consensus 31 ~~~~~~~~~~~~~~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 107 (260)
++++++..+.+.+...+|.++|++|. +.|+.||+.|||+||++||+.|++++|.++|++|.+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~--------------- 193 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD--------------- 193 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH---------------
Confidence 47888888999999999999998875 458999999999999999999999999999998775
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHH
Q 041786 108 CFVRMIRKGFVPDKRTHTILVNAWCSSGKM-REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186 (260)
Q Consensus 108 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~ 186 (260)
.|+.||.+|||+||+++|+.|+. ++|.++|++|. +.|+.||..+|+++++++.
T Consensus 194 -------~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~-------------------~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 194 -------AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-------------------QEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp -------TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------------------HHTCCSHHHHHHSCCCHHH
T ss_pred -------cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-------------------HcCCCCChhhcccccChhh
Confidence 57789999999999999999984 78888888888 4567888899986555544
Q ss_pred hcCC--------CCCCcc------hHHHHHHHHhhhhhc
Q 041786 187 KSGE--------LGLCAD------VNTNKISIPAVSKEF 211 (260)
Q Consensus 187 ~~~~--------~~~~~~------~~t~~~li~~~~~~g 211 (260)
+.+- .++.|. +.|...|.+-|.+.+
T Consensus 248 R~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 4432 444444 667777778887765
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.64 E-value=7.1e-14 Score=122.66 Aligned_cols=205 Identities=8% Similarity=-0.087 Sum_probs=133.5
Q ss_pred hhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-----------
Q 041786 41 TLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----------- 109 (260)
Q Consensus 41 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----------- 109 (260)
..+...+|.++|+.+.+. .++..+|+.++..|.+.|++++|+++|+++.+.+. .+..+|+.++.++
T Consensus 284 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp THHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 445555899999998765 57899999999999999999999999999987652 3556666666544
Q ss_pred --HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------------CCCHHHHHHHHHHHHHCCCC
Q 041786 110 --VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------NPPVRSAKQMVNKMIKQGSV 172 (260)
Q Consensus 110 --~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------~~~~~~a~~l~~~m~~~g~~ 172 (260)
+++.+. ...+..+|+.+..+|.+.|++++|.++|+++.+..- ..+..+|.++|+.+.+.+ +
T Consensus 361 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 438 (597)
T 2xpi_A 361 ISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-Q 438 (597)
T ss_dssp HHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 223321 233566777777777777777777777777655321 112226677777766553 2
Q ss_pred CChhchHHHHHHHHhcCC------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC----CCCcCCC--c
Q 041786 173 PDLETFNSLIETICKSGE------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED----GHKLFPS--L 234 (260)
Q Consensus 173 p~~~~~~~li~~~~~~~~------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~--~ 234 (260)
.+..+|+.+..+|.+.|+ .....+..+|+.+...|.+.|++++|.++|+++.+. +..|+.. .
T Consensus 439 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 356677777777777776 111224566666667777777777777777666554 4455421 1
Q ss_pred -----------ccHHHHHHHHHHHHhc
Q 041786 235 -----------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 235 -----------g~~~~a~~~~~~m~~~ 250 (260)
|++++|.++|+++...
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666544
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.60 E-value=2e-13 Score=119.85 Aligned_cols=218 Identities=8% Similarity=-0.101 Sum_probs=174.2
Q ss_pred cccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 27 HDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
++......+...+...+...+|.++|+.+.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 3444556677778888888899999999976552 367889999999999999999999999998643 45677888887
Q ss_pred HHH-------------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC---------------CCHHH
Q 041786 107 VCF-------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN---------------PPVRS 158 (260)
Q Consensus 107 ~~~-------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---------------~~~~~ 158 (260)
.++ +++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+.. .+..+
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHH
Confidence 554 3333321 235779999999999999999999999998876432 22338
Q ss_pred HHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------------CCCCcc--hHHHHHHHHhhhhhccHHHHHHH
Q 041786 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------------LGLCAD--VNTNKISIPAVSKEFMIDEAFRL 219 (260)
Q Consensus 159 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------------~~~~~~--~~t~~~li~~~~~~g~~~~a~~~ 219 (260)
|.++|+.+.+.. +.+..+|+.+...|.+.|+ .+..|+ ..+|..+..+|.+.|++++|...
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998764 3478899999999999999 266787 78999999999999999999999
Q ss_pred HHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhc
Q 041786 220 LCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 220 ~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
|+++.+.+ |+... |++++|..+|+++.+.
T Consensus 539 ~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 539 LNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99998765 43222 9999999999998864
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=3.2e-08 Score=82.07 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=68.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC----------
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE---------- 190 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~---------- 190 (260)
..++..+...|.+.|++++|.+.|+++. +.. +.+..+|..+...|.+.|+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAI-------------------ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444445555555555555555555444 332 1245677777778877777
Q ss_pred --CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHh
Q 041786 191 --LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 191 --~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~ 249 (260)
.....+..+|+.+...+.+.|++++|...|+++.+. .|+... |++++|...|+++..
T Consensus 297 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 122345677888888888888888888888887654 243222 888888888888774
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.95 E-value=2e-07 Score=78.62 Aligned_cols=227 Identities=16% Similarity=0.072 Sum_probs=143.1
Q ss_pred hhhhHHHHHHHHccc---chhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 15 FAAVNHIANIVRHDI---YAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 15 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
..++..+...+..+. .....+-..+...+...+|.+.|+.+.+.+ +.+...|..+...|.+.|++++|...|+++.
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 121 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444443332 223444445556666668888888876553 2346778888888888888888888888887
Q ss_pred hcCCCCc-H---HHHHHHHHH------------H-------------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 92 AFNCQQC-V---LLYNSLHVC------------F-------------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 92 ~~~~~~~-~---~~~~~li~~------------~-------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+.. |+ . ..+..+... + +++.+. .+.+...+..+...|.+.|++++|.+
T Consensus 122 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 122 KSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred hcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 643 33 2 444444221 1 222222 12356777888888888888888888
Q ss_pred HHHHHHhCCC---------------CCCHHHHHHHHHHHHHCCCCCC-hhchHHH------------HHHHHhcCC----
Q 041786 143 FLQELSDKGF---------------NPPVRSAKQMVNKMIKQGSVPD-LETFNSL------------IETICKSGE---- 190 (260)
Q Consensus 143 ~~~~m~~~~~---------------~~~~~~a~~l~~~m~~~g~~p~-~~~~~~l------------i~~~~~~~~---- 190 (260)
+|+++.+..- ..+..+|...|+.+.+. .|+ ...+..+ ...|.+.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8887765321 23333788888877654 343 3334333 667777777
Q ss_pred -------CCCCcc-----hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHH
Q 041786 191 -------LGLCAD-----VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSE 246 (260)
Q Consensus 191 -------~~~~~~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~ 246 (260)
....|+ ...|..+...+.+.|++++|...++++.+.. |+... |++++|...|++
T Consensus 277 ~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 222333 4477788888888888988888888877642 32222 888899888888
Q ss_pred HHh
Q 041786 247 MQI 249 (260)
Q Consensus 247 m~~ 249 (260)
...
T Consensus 355 al~ 357 (450)
T 2y4t_A 355 AQE 357 (450)
T ss_dssp HHT
T ss_pred HHH
Confidence 875
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=3.3e-07 Score=75.91 Aligned_cols=124 Identities=10% Similarity=0.020 Sum_probs=75.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-----------------HHHHHHHHHHHHCCCCCChhchHHHHH
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPV-----------------RSAKQMVNKMIKQGSVPDLETFNSLIE 183 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----------------~~a~~l~~~m~~~g~~p~~~~~~~li~ 183 (260)
...|+.+...|.+.|++++|.+.|+++.+.+ |+. .+|...|....+.. +-+..++..+..
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 245 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHH
Confidence 4555666666666666666666666655432 221 14555555444432 123566777777
Q ss_pred HHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHH
Q 041786 184 TICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDD 239 (260)
Q Consensus 184 ~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~ 239 (260)
.|.+.|+ ....| +..+|..+...|.+.|++++|...|+++.+.. |+... |++++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHH
Confidence 7777776 22233 35567777778888888888888887777652 32221 78888
Q ss_pred HHHHHHHHHh
Q 041786 240 AFCFFSEMQI 249 (260)
Q Consensus 240 a~~~~~~m~~ 249 (260)
|...++++..
T Consensus 324 A~~~~~~al~ 333 (388)
T 1w3b_A 324 AVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.94 E-value=1.2e-07 Score=80.04 Aligned_cols=208 Identities=12% Similarity=-0.002 Sum_probs=126.1
Q ss_pred hhHHHHHHHHcccch---hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 17 AVNHIANIVRHDIYA---ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 17 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
....+.+.+..+... ...+...+...+...+|.++|+.+.+.. +.+...|..+...|.+.|++++|+..|+++.+.
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334444444444333 3444455666777779999999886542 346889999999999999999999999998875
Q ss_pred CCCCcHHHHHHHHHHH-------------HHHHhCCCCCCH----hhHHHHHHH------------HhccCCHHHHHHHH
Q 041786 94 NCQQCVLLYNSLHVCF-------------VRMIRKGFVPDK----RTHTILVNA------------WCSSGKMREAQEFL 144 (260)
Q Consensus 94 ~~~~~~~~~~~li~~~-------------~~m~~~g~~p~~----~~~~~li~~------------~~~~g~~~~a~~~~ 144 (260)
+ +.+...+..+..++ +++.+ ..|+. ..+..+... +.+.|++++|.+.|
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4 11233344333332 11111 22322 233333222 45555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------C-CCCcchHHHHHHHHhhhhhcc
Q 041786 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------L-GLCADVNTNKISIPAVSKEFM 212 (260)
Q Consensus 145 ~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~-~~~~~~~t~~~li~~~~~~g~ 212 (260)
+++.+ .. +.+...+..+...|.+.|+ . ....+..+|..+...|...|+
T Consensus 167 ~~~~~-------------------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 167 DKILE-------------------VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHH-------------------HC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-------------------hC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 54443 22 2356778888888888887 1 122356788888999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCCCc------------------------ccHHHHHHHHHHHHhc
Q 041786 213 IDEAFRLLCNLVEDGHKLFPSL------------------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 213 ~~~a~~~~~~m~~~~~~p~~~~------------------------g~~~~a~~~~~~m~~~ 250 (260)
+++|...|+++.... |+... |++++|...|+++...
T Consensus 227 ~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 227 HELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999887543 22211 8888888888888753
No 11
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.77 E-value=6.7e-07 Score=73.34 Aligned_cols=182 Identities=12% Similarity=0.028 Sum_probs=122.7
Q ss_pred cchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHh
Q 041786 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~ 122 (260)
+...+|.+.|+...+.. +.+...|..+...|.+.|++++|+..|++..+.. +.+..
T Consensus 79 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p~~~~ 134 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-----------------------PNNLK 134 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHH
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------CCCHH
Confidence 33335555555554332 1234555555555555566666655555554321 12467
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCC-------------------------CCCHHHHHHHHHHHHHCCCC-CChh
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKGF-------------------------NPPVRSAKQMVNKMIKQGSV-PDLE 176 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------------------~~~~~~a~~l~~~m~~~g~~-p~~~ 176 (260)
.|..+...|.+.|++++|.+.|+++.+..- ..+..+|..+|+...+.... ++..
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 788888888888888888888887754310 11233788888887766422 2678
Q ss_pred chHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------
Q 041786 177 TFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------- 234 (260)
Q Consensus 177 ~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---------- 234 (260)
++..+...|.+.|+ ....| +..+|..+...|.+.|++++|...|++..+.. |+...
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 89999999999998 22233 57789999999999999999999999988753 33322
Q ss_pred --ccHHHHHHHHHHHHhc
Q 041786 235 --GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 235 --g~~~~a~~~~~~m~~~ 250 (260)
|++++|...|++....
T Consensus 293 ~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 9999999999988753
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.75 E-value=1.7e-06 Score=69.23 Aligned_cols=184 Identities=15% Similarity=0.123 Sum_probs=117.2
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH-HHH----
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH-VCF---- 109 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~---- 109 (260)
+.+.++..+....|...+ ... -.|+...+..+...+.+.++.++|++.++++...+..|+...+..++ ..+
T Consensus 40 l~r~yi~~g~~~~al~~~---~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEI---KPS-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHS---CTT-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHh---ccc-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 445566666665666544 332 35677888999999999999999999999998877667655444433 322
Q ss_pred -----HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHH
Q 041786 110 -----VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN-----------------PPVRSAKQMVNKMI 167 (260)
Q Consensus 110 -----~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------------~~~~~a~~l~~~m~ 167 (260)
....+. ..+...+..+...|.+.|++++|...|+++.+..-. ....+|..+|+++.
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 112222 467788889999999999999999999998865311 11115555666665
Q ss_pred HCCCCCChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHH-HHHHHHHHHH
Q 041786 168 KQGSVPDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDE-AFRLLCNLVE 225 (260)
Q Consensus 168 ~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~-a~~~~~~m~~ 225 (260)
+. .+.+...|+.+-.++.+.|+ ....| +..++..++..+...|+.++ +.++++++.+
T Consensus 194 ~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 194 DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54 23455566666666666665 12222 34455556666666666544 3455555554
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.73 E-value=3.4e-06 Score=67.59 Aligned_cols=126 Identities=10% Similarity=-0.036 Sum_probs=79.0
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------------CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHH
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 185 (260)
...|..+...|...|++++|.+.|++..+..- ..+..+|...+....+.. +.+...+..+...|
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455555555555555555555555443321 111224555555544432 23566777777778
Q ss_pred HhcCC---------------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------
Q 041786 186 CKSGE---------------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------- 234 (260)
Q Consensus 186 ~~~~~---------------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---------- 234 (260)
.+.|+ .....+...|..+...|.+.|++++|...|++..+.. |+...
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHS 281 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHH
Confidence 88777 1113345788888889999999999999999888653 33222
Q ss_pred --ccHHHHHHHHHHHHh
Q 041786 235 --GQFDDAFCFFSEMQI 249 (260)
Q Consensus 235 --g~~~~a~~~~~~m~~ 249 (260)
|++++|...|++...
T Consensus 282 ~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 282 LMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHTCHHHHHHHHHTTTT
T ss_pred HhccHHHHHHHHHHHHc
Confidence 899999999887764
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.72 E-value=2.8e-06 Score=69.46 Aligned_cols=182 Identities=13% Similarity=0.013 Sum_probs=119.1
Q ss_pred cchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHh
Q 041786 43 ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKR 122 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~ 122 (260)
+...+|.+.|+...+.. +.+...|..+...|.+.|++++|+..|++..+.. +.+..
T Consensus 78 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~ 133 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-----------------------PDNQT 133 (368)
T ss_dssp TCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-----------------------CCCHH
Confidence 33334444444443332 1234444444455555555555555555444321 23567
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCC------------------------------CCHHHHHHHHHHHHHCCCC
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKGFN------------------------------PPVRSAKQMVNKMIKQGSV 172 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------------------------~~~~~a~~l~~~m~~~g~~ 172 (260)
.+..+...|.+.|++++|.+.|+++...... .+..+|...|..+.+....
T Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 213 (368)
T 1fch_A 134 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 213 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC
Confidence 7888888888889999999888887664321 1122677777777665322
Q ss_pred -CChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----
Q 041786 173 -PDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----- 234 (260)
Q Consensus 173 -p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----- 234 (260)
++..++..+...|.+.|+ ....| +...|..+...|.+.|++++|...|++..+.. |+...
T Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l 291 (368)
T 1fch_A 214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNL 291 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 157788899999999998 22233 46789999999999999999999999988753 33222
Q ss_pred -------ccHHHHHHHHHHHHhc
Q 041786 235 -------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 235 -------g~~~~a~~~~~~m~~~ 250 (260)
|++++|...|++....
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999888753
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=5.7e-07 Score=69.54 Aligned_cols=190 Identities=9% Similarity=-0.016 Sum_probs=139.9
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
+-..+...+...+|.+.|+...+.. .+...|..+...|.+.|++++|...|++..+..
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 68 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-------------------- 68 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------
Confidence 3344555566668999998887666 678899999999999999999999999877521
Q ss_pred CCCCCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHCCCCCChhchHHHHH
Q 041786 115 KGFVPD----KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP-------VRSAKQMVNKMIKQGSVPDLETFNSLIE 183 (260)
Q Consensus 115 ~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-------~~~a~~l~~~m~~~g~~p~~~~~~~li~ 183 (260)
....|+ ...|..+-..|.+.|++++|.+.|++..+..-.++ ..+|...+....+.. +.+...+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 147 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGK 147 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 011122 57788888999999999999999998876432222 226667777766543 224567778888
Q ss_pred HHHhcCC-----------CCC-CcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHH
Q 041786 184 TICKSGE-----------LGL-CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDD 239 (260)
Q Consensus 184 ~~~~~~~-----------~~~-~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~ 239 (260)
.+...|+ ... ..+...|..+...|.+.|++++|...|++..+.. |+... |+.++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHH
Confidence 8888887 122 2356788889999999999999999999988754 33222 99999
Q ss_pred HHHHHHHHHh
Q 041786 240 AFCFFSEMQI 249 (260)
Q Consensus 240 a~~~~~~m~~ 249 (260)
|...|++...
T Consensus 226 A~~~~~~a~~ 235 (258)
T 3uq3_A 226 ALETLDAART 235 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.69 E-value=7.2e-06 Score=70.02 Aligned_cols=82 Identities=7% Similarity=-0.093 Sum_probs=59.4
Q ss_pred cchhhhhHHHHHHHHcccc--hhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041786 12 EDYFAAVNHIANIVRHDIY--AERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK 89 (260)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (260)
..+..++..+.+.+..+.. ....+-..+...+...+|.+.++...+.. +.+...|..+...|.+.|++++|...|+.
T Consensus 20 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555666666666665432 33445556666777779999998886654 23567888999999999999999999998
Q ss_pred hhhcC
Q 041786 90 CTAFN 94 (260)
Q Consensus 90 m~~~~ 94 (260)
+.+.+
T Consensus 99 ~~~~~ 103 (514)
T 2gw1_A 99 LSLNG 103 (514)
T ss_dssp HHHSS
T ss_pred HHhcC
Confidence 87655
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.61 E-value=1.6e-05 Score=63.58 Aligned_cols=199 Identities=8% Similarity=-0.042 Sum_probs=141.7
Q ss_pred cccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 27 HDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
.+..........+...+...+|.++|+.+.+.. +.+...+..+...+.+.|++++|..+++++.+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------ 86 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY------------ 86 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC------------
Confidence 334444455555556666678888888775443 2234556667777788888888888888777532
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCC---------------CCHHHHHHHHHHHHHCC
Q 041786 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSG-KMREAQEFLQELSDKGFN---------------PPVRSAKQMVNKMIKQG 170 (260)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~---------------~~~~~a~~l~~~m~~~g 170 (260)
+.+...|..+-..|...| ++++|.+.|++..+..-. .+..+|...|....+..
T Consensus 87 -----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 87 -----------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp -----------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred -----------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 124667888888999999 999999999998765422 12228888888887664
Q ss_pred CCCChhchHHHHHHHHhcCC-----------CCC-CcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCC-------cC
Q 041786 171 SVPDLETFNSLIETICKSGE-----------LGL-CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK-------LF 231 (260)
Q Consensus 171 ~~p~~~~~~~li~~~~~~~~-----------~~~-~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------p~ 231 (260)
. .+...+..+...|...|+ ... ..+...+..+...|...|++++|...|++..+..-. |.
T Consensus 156 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 234 (330)
T 3hym_B 156 K-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234 (330)
T ss_dssp T-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence 2 346677778888999998 233 335678889999999999999999999998764210 11
Q ss_pred CC-c-----------ccHHHHHHHHHHHHhc
Q 041786 232 PS-L-----------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 232 ~~-~-----------g~~~~a~~~~~~m~~~ 250 (260)
.. . |++++|...+++....
T Consensus 235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 11 1 9999999999988764
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.61 E-value=6.2e-06 Score=66.00 Aligned_cols=186 Identities=12% Similarity=-0.021 Sum_probs=131.5
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+...+|.++|+.+.+.. +.+...|..+...+.+.|++++|...|++..+..
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------- 85 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----------------------- 85 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 3444556668888888876543 2367888889999999999999999999887632
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC------------------------------CCHHHHHHHHHHHH
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN------------------------------PPVRSAKQMVNKMI 167 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------------------------~~~~~a~~l~~~m~ 167 (260)
+.+...+..+...|.+.|++++|.+.+++..+.... .+..+|..++....
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 124556666777777777777777777776543110 11136666666666
Q ss_pred HCCCCCChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-
Q 041786 168 KQGSVPDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL- 234 (260)
Q Consensus 168 ~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~- 234 (260)
+.. +.+...+..+...|.+.|+ ....| +...|..+...|...|++++|...|++..+.. |+...
T Consensus 166 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~ 242 (327)
T 3cv0_A 166 EMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRV 242 (327)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH
Confidence 553 2367788888888888888 12223 46778888899999999999999999987653 32211
Q ss_pred -----------ccHHHHHHHHHHHHhc
Q 041786 235 -----------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 235 -----------g~~~~a~~~~~~m~~~ 250 (260)
|++++|...|++....
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999887654
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.59 E-value=1.6e-05 Score=61.29 Aligned_cols=171 Identities=13% Similarity=-0.031 Sum_probs=99.1
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~ 115 (260)
-..+...+...+|.+.|+...+.. +.+...|..+...|.+.|++++|.+.|++..+.. |
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~------------------ 102 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--S------------------ 102 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c------------------
Confidence 334445566668888888876543 2357888888999999999999999999887643 1
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----- 190 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~----- 190 (260)
.+...+..+...|.+.|++++|.++|++..+.+..|+ +...+..+...|...|+
T Consensus 103 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 103 ---RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE------------------RSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT------------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc------------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 1344555555556666666666666665554211121 12222333333333333
Q ss_pred ------CCC-CcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhc
Q 041786 191 ------LGL-CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 191 ------~~~-~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
... ..+...+..+...|...|+.++|...|++..+.. |+... |+.++|..+++++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 001 1134555666666666777777777776665532 22111 6777777777666543
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.56 E-value=2.3e-06 Score=68.39 Aligned_cols=198 Identities=9% Similarity=-0.001 Sum_probs=125.8
Q ss_pred hhhcchHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------
Q 041786 40 LTLISELSMWKTIELMKPDSLSVF--PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------- 109 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------- 109 (260)
...+....|.+.++..... .|+ ....-.+..+|...|+++.|+..++.. -.|+..++..+...+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445555777777666544 344 345567789999999999999866542 244555555554333
Q ss_pred -----HHHHhCCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHHHhCC------------CCCCHHHHHHHHHHHHHCCC
Q 041786 110 -----VRMIRKGFVPDKR-THTILVNAWCSSGKMREAQEFLQELSDKG------------FNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 110 -----~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------~~~~~~~a~~l~~~m~~~g~ 171 (260)
+++...+..|+.. .+..+-..+.+.|++++|++.+++ ... ......+|...|+.+.+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 4555666667654 445555888999999999998876 000 0223338888888887764
Q ss_pred CCChhchHHHHHHHH----hcCC------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-
Q 041786 172 VPDLETFNSLIETIC----KSGE------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL- 234 (260)
Q Consensus 172 ~p~~~~~~~li~~~~----~~~~------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~- 234 (260)
|+.. ...+..++. ..|+ .....+...|+.+-.++.+.|++++|...|++..+.. |+...
T Consensus 161 -p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~ 236 (291)
T 3mkr_A 161 -EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET 236 (291)
T ss_dssp -TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred -cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 5532 223323322 2233 2233467788888888999999999999998877643 43332
Q ss_pred -----------ccHHH-HHHHHHHHHhc
Q 041786 235 -----------GQFDD-AFCFFSEMQIK 250 (260)
Q Consensus 235 -----------g~~~~-a~~~~~~m~~~ 250 (260)
|+.++ +.++++++.+.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 66654 56788777643
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.55 E-value=2.4e-05 Score=63.23 Aligned_cols=189 Identities=12% Similarity=-0.025 Sum_probs=114.6
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------- 109 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------- 109 (260)
.+...+...+|.+.|+...+.. +.+...|..+...|.+.|++++|...|++..+.. +.+...|..+..++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 3444455557777777765442 2346677777778888888888888887777643 11223333333222
Q ss_pred -----HHHHhCCCCC----CHhhHHHH------------HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 041786 110 -----VRMIRKGFVP----DKRTHTIL------------VNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIK 168 (260)
Q Consensus 110 -----~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~ 168 (260)
++.. ...| +...+..+ ...+...|++++|.++|++..+..
T Consensus 90 A~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 150 (359)
T 3ieg_A 90 AEDDFKKVL--KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC----------------- 150 (359)
T ss_dssp HHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHH--hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------
Confidence 1111 2234 22333333 356677777777777777665421
Q ss_pred CCCCCChhchHHHHHHHHhcCC------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCC----
Q 041786 169 QGSVPDLETFNSLIETICKSGE------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFP---- 232 (260)
Q Consensus 169 ~g~~p~~~~~~~li~~~~~~~~------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---- 232 (260)
+.+...+..+...|...|+ .....+...+..+...|...|++++|...|++..+..-....
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 151 ---VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 2345667777777777777 222335677888888888899999999988888764322111
Q ss_pred ------------------CcccHHHHHHHHHHHHhc
Q 041786 233 ------------------SLGQFDDAFCFFSEMQIK 250 (260)
Q Consensus 233 ------------------~~g~~~~a~~~~~~m~~~ 250 (260)
..|++++|...+++....
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 017888888888777653
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.53 E-value=3.4e-07 Score=76.65 Aligned_cols=177 Identities=10% Similarity=0.017 Sum_probs=60.9
Q ss_pred HHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH----
Q 041786 34 TLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---- 109 (260)
Q Consensus 34 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---- 109 (260)
.+...+...+...+|.+.|.. .+|...|..++..+.+.|++++|+..++..++. .+++.+.+.++.|+
T Consensus 37 ~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 344444445555577777754 257778888888888889999988877666653 45567788888776
Q ss_pred --HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHCCCCCChhchHH
Q 041786 110 --VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK-------GFNPPVRSAKQMVNKMIKQGSVPDLETFNS 180 (260)
Q Consensus 110 --~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~ 180 (260)
.++.+---.|+..+|+.+-..|...|.+++|..+|..+... ....+...|.+.+... .++.+|..
T Consensus 109 ~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~ 182 (449)
T 1b89_A 109 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 182 (449)
T ss_dssp CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHH
Confidence 33444333577788999999999999999999988866321 1234444677777766 27788888
Q ss_pred HHHHHHhcCC--------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 181 LIETICKSGE--------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 181 li~~~~~~~~--------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
++.+|...|+ ..+..+..-...++..|.+.|++++|..+++.-.
T Consensus 183 v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 8888888887 2222333334467788888888888888887754
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.52 E-value=1.4e-05 Score=63.96 Aligned_cols=211 Identities=12% Similarity=-0.038 Sum_probs=139.6
Q ss_pred hhhhhHHHHHHHHcccc---hhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 041786 14 YFAAVNHIANIVRHDIY---AERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (260)
+..++..+.+.++.+.. ....+-..+...+...+|.+.++...+.. +.+...|..+...|.+.|++++|...|++.
T Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444454444332 23334445566677779999999886653 236788999999999999999999999998
Q ss_pred hhcCCCCcHHHHHHH----------------------------HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 91 TAFNCQQCVLLYNSL----------------------------HVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 91 ~~~~~~~~~~~~~~l----------------------------i~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
.+.... +...+..+ +..+++..+.. +.+...+..+...|.+.|++++|.+
T Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 116 LLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 865311 11112111 11123333322 2357788888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhh
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSKE 210 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~ 210 (260)
.+++..+.. +.+...|..+...|.+.|+ ....| +...|..+...|.+.
T Consensus 194 ~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 194 NLRRAVELR--------------------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC--------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999876531 2245667777777777777 12223 467888899999999
Q ss_pred ccHHHHHHHHHHHHHCCCCc-----------CCCc-----------ccHHHHHHHHHHH
Q 041786 211 FMIDEAFRLLCNLVEDGHKL-----------FPSL-----------GQFDDAFCFFSEM 247 (260)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~p-----------~~~~-----------g~~~~a~~~~~~m 247 (260)
|++++|...|++..+..-.. +... |+.++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999987653221 0111 8888888887643
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.51 E-value=9.5e-06 Score=61.14 Aligned_cols=171 Identities=11% Similarity=-0.025 Sum_probs=112.6
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~ 115 (260)
-..+...+...+|.+.|+...+.. +.+...|..+...|...|++++|...|++..+..
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 72 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--------------------- 72 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------------------
Confidence 334445556667888887765542 2346778888888888888888888888877532
Q ss_pred CCCCCHhhHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC----
Q 041786 116 GFVPDKRTHTILVNAWCSS-GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE---- 190 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~---- 190 (260)
..+...+..+...|... |++++|...++++.+.+..|+ +...+..+...|...|+
T Consensus 73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 73 --PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT------------------PYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp --TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC------------------HHHHHHHHHHHHHHTTCHHHH
T ss_pred --CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc------------------hHHHHHHHHHHHHHcCCHHHH
Confidence 12456677777888888 888888888887775222221 13344444555555554
Q ss_pred -------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCc-CCCc------------ccHHHHHHHHHHHHh
Q 041786 191 -------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKL-FPSL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 191 -------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~------------g~~~~a~~~~~~m~~ 249 (260)
....| +...+..+...+.+.|++++|...|++..+.. | +... |+.+.|..+++.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11122 35667778888888888999888888877643 2 1111 888888888887764
Q ss_pred c
Q 041786 250 K 250 (260)
Q Consensus 250 ~ 250 (260)
.
T Consensus 211 ~ 211 (225)
T 2vq2_A 211 N 211 (225)
T ss_dssp H
T ss_pred h
Confidence 3
No 25
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.50 E-value=6.6e-06 Score=63.52 Aligned_cols=142 Identities=8% Similarity=-0.031 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+...+...|++++|...|+++.+.. ..+...+..+...|.+.|++++|.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------------~~~~~~~~~la~~~~~~~~~~~A~~~ 93 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------------------PSSADAHAALAVVFQTEMEPKLADEE 93 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------------------CChHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5778888999999999999999999887632 23567888889999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CC--CCc-chHHHHHHHHhhhh
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LG--LCA-DVNTNKISIPAVSK 209 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~--~~~-~~~t~~~li~~~~~ 209 (260)
|++..+.. +.+...+..+...|...|+ .. ..| +...+..+...|..
T Consensus 94 ~~~a~~~~--------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 94 YRKALASD--------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 99887532 2245667777777777777 22 344 56778888899999
Q ss_pred hccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhc
Q 041786 210 EFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
.|++++|...|++..+.. |.... |++++|..++++....
T Consensus 154 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999988754 32211 9999999999998753
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.49 E-value=1.5e-05 Score=65.25 Aligned_cols=189 Identities=12% Similarity=0.015 Sum_probs=132.3
Q ss_pred hhhhHHHHHHHHccc---chhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 15 FAAVNHIANIVRHDI---YAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 15 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
..++..+.+.+..+. .....+-..+...+...+|.+.|+...+.. +.+...|..+...|.+.|++++|+..|+++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 344444555544433 334455556666777779999999986653 2358899999999999999999999999998
Q ss_pred hcCCCCcH-HHHHH----------HHHH-------------HHHHHhCC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 92 AFNCQQCV-LLYNS----------LHVC-------------FVRMIRKG-FVPDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 92 ~~~~~~~~-~~~~~----------li~~-------------~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
+.. |+. ..+.. +..+ +++..+.. -.++...|..+...|.+.|++++|.+.|++
T Consensus 161 ~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 238 (365)
T 4eqf_A 161 KQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238 (365)
T ss_dssp HHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 753 221 11111 1111 13333322 112577888889999999999999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHH
Q 041786 147 LSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMID 214 (260)
Q Consensus 147 m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~ 214 (260)
..+.. +.+..+|..+...|.+.|+ ....| +...|..+...|.+.|+++
T Consensus 239 al~~~--------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 239 ALTVR--------------------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHhC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 77531 2357788889999999988 22334 4778999999999999999
Q ss_pred HHHHHHHHHHHC
Q 041786 215 EAFRLLCNLVED 226 (260)
Q Consensus 215 ~a~~~~~~m~~~ 226 (260)
+|...|++..+.
T Consensus 299 ~A~~~~~~al~~ 310 (365)
T 4eqf_A 299 EAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 27
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.49 E-value=2.5e-06 Score=65.39 Aligned_cols=54 Identities=4% Similarity=-0.041 Sum_probs=33.2
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
+...+...+|.+.|+...+.. +.+...|..+...|.+.|++++|...|++..+.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334444446777777765532 235777888888888888888888888887764
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.43 E-value=2.6e-05 Score=63.63 Aligned_cols=192 Identities=17% Similarity=0.057 Sum_probs=133.8
Q ss_pred chhhhhHHHHHHHHcccc---hhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041786 13 DYFAAVNHIANIVRHDIY---AERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNK 89 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (260)
.+..++..+.+.+..+.. ....+-.++...+...+|.+.|+...+.. +.+...|..+...|.+.|++++|...|++
T Consensus 79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRD 157 (368)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555554432 23445555666777779999999886654 23688999999999999999999999999
Q ss_pred hhhcCCCCcHHHH-------------------HHHH---------HHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHHHH
Q 041786 90 CTAFNCQQCVLLY-------------------NSLH---------VCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREA 140 (260)
Q Consensus 90 m~~~~~~~~~~~~-------------------~~li---------~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a 140 (260)
+.+..... ...+ ..+. ..++++.+... .++..++..+...|.+.|++++|
T Consensus 158 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 158 WLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 88754211 1111 1111 11133333221 12478888999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhh
Q 041786 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVS 208 (260)
Q Consensus 141 ~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~ 208 (260)
...|++..+.. +.+...|..+...|.+.|+ ....| +...+..+...|.
T Consensus 237 ~~~~~~al~~~--------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 237 VDCFTAALSVR--------------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999877531 2246678888888888887 22233 4678899999999
Q ss_pred hhccHHHHHHHHHHHHHC
Q 041786 209 KEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~ 226 (260)
+.|++++|...|++..+.
T Consensus 297 ~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.41 E-value=7.1e-08 Score=80.75 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=26.9
Q ss_pred hhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH----------
Q 041786 40 LTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF---------- 109 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---------- 109 (260)
-.+++..+|.+.++.+ ++..+|..|..++.+.|++++|++.|.+. +|..+|..++.+.
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3445556888888887 23358999999999999999999999652 3444555555322
Q ss_pred --HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHh
Q 041786 110 --VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187 (260)
Q Consensus 110 --~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 187 (260)
-+|.+.. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|..
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------------------------~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN--------------------------GPNNAHIQQVGDRCYD 134 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------------------------CC--------------
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc--------------------------CCcHHHHHHHHHHHHH
Confidence 1111111 2344556666666666666666655443 2555677777777777
Q ss_pred cCCCC----CCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 188 SGELG----LCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 188 ~~~~~----~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
.|... .-.....|..+..++.+.|++++|.+.++.+
T Consensus 135 ~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 135 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp --CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 77611 1112246777777777777777777777766
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.41 E-value=3.5e-05 Score=65.73 Aligned_cols=189 Identities=11% Similarity=-0.002 Sum_probs=109.4
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-----
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----- 109 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----- 109 (260)
+-..+...+...+|.+.|+...+.. |+...|..+...|.+.|++++|...|+...+.. +.+...|..+..++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 3344445556668888887776554 337777788888888888888888888877543 12334444444333
Q ss_pred --------HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHH
Q 041786 110 --------VRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSL 181 (260)
Q Consensus 110 --------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~l 181 (260)
++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~l 378 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--------------------PEAPEVPNFF 378 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------------------TTCSHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------------------ccCHHHHHHH
Confidence 2222211 1234566666667777777777777776655421 1234455555
Q ss_pred HHHHHhcCC-----------CCCCc---c----hHHHHHHHHhhhh---hccHHHHHHHHHHHHHCCCCcCCCc------
Q 041786 182 IETICKSGE-----------LGLCA---D----VNTNKISIPAVSK---EFMIDEAFRLLCNLVEDGHKLFPSL------ 234 (260)
Q Consensus 182 i~~~~~~~~-----------~~~~~---~----~~t~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~------ 234 (260)
...|.+.|+ ....| + ...|..+...|.. .|++++|...|++..+.. |+...
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 456 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLA 456 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 666666665 00111 1 3356666666666 777777777777766542 22211
Q ss_pred ------ccHHHHHHHHHHHHh
Q 041786 235 ------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 235 ------g~~~~a~~~~~~m~~ 249 (260)
|++++|...|++...
T Consensus 457 ~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 457 QMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 777777777766654
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.40 E-value=2.1e-05 Score=59.81 Aligned_cols=166 Identities=16% Similarity=0.026 Sum_probs=107.8
Q ss_pred HHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHH
Q 041786 34 TLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMI 113 (260)
Q Consensus 34 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~ 113 (260)
.+-..+...+...+|...|+...+.. +-+...|..+-..+.+.|++++|+..|++..+.. |+
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~--------------- 71 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PR--------------- 71 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------------
Confidence 34444555666678999998876553 2357888889999999999999999999888643 21
Q ss_pred hCCCCCCHhhHHHHHHHHhcc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHH
Q 041786 114 RKGFVPDKRTHTILVNAWCSS-----------GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSL 181 (260)
Q Consensus 114 ~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~l 181 (260)
+...+..+-..|.+. |++++|++.|++..+. .| +...|..+
T Consensus 72 ------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------------------~P~~~~~~~~l 124 (217)
T 2pl2_A 72 ------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---------------------NPRYAPLHLQR 124 (217)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---------------------CTTCHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---------------------CcccHHHHHHH
Confidence 233444455555555 9999999999987763 23 35566666
Q ss_pred HHHHHhcCC-------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------cc
Q 041786 182 IETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQ 236 (260)
Q Consensus 182 i~~~~~~~~-------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~ 236 (260)
-..|...|+ .. .+...+..+-..|...|++++|...|++..+.. |+... |+
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccC
Confidence 667777776 22 567778888888999999999999998887643 43322 88
Q ss_pred HHHHHHHHHHHH
Q 041786 237 FDDAFCFFSEMQ 248 (260)
Q Consensus 237 ~~~a~~~~~~m~ 248 (260)
.++|+..|++..
T Consensus 201 ~~~A~~~~~~~~ 212 (217)
T 2pl2_A 201 AEEAARAAALEH 212 (217)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 32
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.40 E-value=6.8e-05 Score=60.12 Aligned_cols=80 Identities=5% Similarity=-0.085 Sum_probs=55.4
Q ss_pred HHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCH-h-
Q 041786 46 LSMWKTIELMKPDSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK-R- 122 (260)
Q Consensus 46 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~-~- 122 (260)
.+|.++|+...+. +.| +...|..+...+.+.|++++|..+|++..+ +.|+. .
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------------~~p~~~~~ 135 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA------------------------IEDIDPTL 135 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------------SSSSCTHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------------ccccCccH
Confidence 4777777776552 123 456788888888888888888888887775 22432 2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
.|..+...+.+.|++++|..+|++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5677777777777777777777776653
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.38 E-value=2.5e-05 Score=58.81 Aligned_cols=143 Identities=13% Similarity=0.005 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+...|..+...+.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~A~~ 63 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-----------------------PKNELAWLVRAEIYQYLKVNDKAQE 63 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----------------------ccchHHHHHHHHHHHHcCChHHHHH
Confidence 46778889999999999999999999887632 1346688888999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhc-CC------------C--CCCcchHHHHHHHHhh
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS-GE------------L--GLCADVNTNKISIPAV 207 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~-~~------------~--~~~~~~~t~~~li~~~ 207 (260)
.|++..+.. +.+...+..+...|... |+ . ....+...+..+...+
T Consensus 64 ~~~~a~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 64 SFRQALSIK--------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHC--------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 999877532 22456677777777777 76 2 2223467888899999
Q ss_pred hhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhc
Q 041786 208 SKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
...|++++|...|+++.+.. |.... |++++|..++++....
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988753 32211 9999999999988754
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.35 E-value=8.6e-05 Score=57.76 Aligned_cols=167 Identities=15% Similarity=0.034 Sum_probs=100.0
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
+-..+...+...+|.+.|+...+.. +.+...|..+...|.+.|++++|...|++..+..
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------- 107 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------------------- 107 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------------
Confidence 3333444555556777776665442 1245666777777777777777777777666532
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHHCCCCCChhchHH
Q 041786 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP--------------PVRSAKQMVNKMIKQGSVPDLETFNS 180 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--------------~~~~a~~l~~~m~~~g~~p~~~~~~~ 180 (260)
+.+...+..+...|.+.|++++|.+.|+++.+..-.. +..+|...+....... .++...+.
T Consensus 108 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~- 182 (275)
T 1xnf_A 108 ---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN- 182 (275)
T ss_dssp ---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-
T ss_pred ---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-
Confidence 1235566667777777777777777777765532111 1225556665554432 23333333
Q ss_pred HHHHHHhcCC-----------CCCCcc-----hHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 181 LIETICKSGE-----------LGLCAD-----VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 181 li~~~~~~~~-----------~~~~~~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
+...+...++ ....|. ...|..+...|.+.|++++|...|++.....
T Consensus 183 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 183 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 4444444443 222232 4678888899999999999999999988754
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.34 E-value=2.2e-05 Score=59.94 Aligned_cols=150 Identities=9% Similarity=-0.031 Sum_probs=102.9
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHH
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m 112 (260)
..+-..+...+...+|.+.++...+.. +.+...|..+...|.+.|++++|...|++..+..
T Consensus 61 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------ 121 (243)
T 2q7f_A 61 INFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------------------ 121 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------
Confidence 344455666677779999998876553 2367889999999999999999999999987632
Q ss_pred HhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC--
Q 041786 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-- 190 (260)
Q Consensus 113 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-- 190 (260)
..+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+...|.+.|+
T Consensus 122 -----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 122 -----MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--------------------ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp -----CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHHTCCH
T ss_pred -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------------CccHHHHHHHHHHHHHcCCHH
Confidence 1245667777788888888888888888766521 1233444445555555554
Q ss_pred ---------CC-CCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 191 ---------LG-LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 191 ---------~~-~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
.. ...+...+..+...|.+.|++++|...|++..+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 01 1123556667777777777777777777777654
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.34 E-value=0.00012 Score=62.83 Aligned_cols=231 Identities=9% Similarity=-0.072 Sum_probs=148.7
Q ss_pred hhhhhHHHHHHHHccc---chhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 041786 14 YFAAVNHIANIVRHDI---YAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKC 90 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 90 (260)
+..++..+...++.+. .....+-.++...+...+|.+.|+...+.. +.+...|..+...|.+.|++++|+..|+.+
T Consensus 41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 119 (537)
T 3fp2_A 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL 119 (537)
T ss_dssp CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555554443 334445556667777779999998886653 235788889999999999999999988644
Q ss_pred hhcCC------------------------------------CCcHHHH------------------------------HH
Q 041786 91 TAFNC------------------------------------QQCVLLY------------------------------NS 104 (260)
Q Consensus 91 ~~~~~------------------------------------~~~~~~~------------------------------~~ 104 (260)
....- .|+.... ..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (537)
T 3fp2_A 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA 199 (537)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHH
Confidence 21110 0111110 00
Q ss_pred HH---------------------HHHHHHHhCCCCCC--------HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--
Q 041786 105 LH---------------------VCFVRMIRKGFVPD--------KRTHTILVNAWCSSGKMREAQEFLQELSDKGFN-- 153 (260)
Q Consensus 105 li---------------------~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-- 153 (260)
+. .+++++. ...|+ ...+..+-..+...|++++|.+.|++..+..-.
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l--~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 277 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLL--SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHH--C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCch
Confidence 00 0111222 22343 224566667788889999999999887764322
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhh
Q 041786 154 ------------PPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSK 209 (260)
Q Consensus 154 ------------~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~ 209 (260)
.+...|...|....+.. +.+..+|..+...|...|+ ....| +...|..+...|..
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 11227888888877654 2357788888888888888 12223 45678888899999
Q ss_pred hccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhc
Q 041786 210 EFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
.|++++|...|++..+.. |+... |++++|...|++....
T Consensus 357 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999999999988753 33322 9999999999887654
No 37
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.33 E-value=7.2e-05 Score=54.25 Aligned_cols=88 Identities=13% Similarity=0.059 Sum_probs=65.5
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+...+|.+.++...+.. +.+...|..+...+.+.|++++|...+++..+..
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------- 72 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------------- 72 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 3444556668888888876553 2367888899999999999999999999887632
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+.+...+..+...|...|++++|.+.|++..+
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 104 (186)
T 3as5_A 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 12456667777778888888888888877664
No 38
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.33 E-value=9.6e-05 Score=59.63 Aligned_cols=232 Identities=15% Similarity=0.069 Sum_probs=153.7
Q ss_pred cchhhhhHHHHHHHHcccc---hhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 041786 12 EDYFAAVNHIANIVRHDIY---AERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN 88 (260)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (260)
..+..++..+...+..+.. ....+-..+...+...+|.+.|+...+.. +-+...|..+...|.+.|++++|...|+
T Consensus 17 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 3445555566665555433 33445555666777779999999886653 2257889999999999999999999999
Q ss_pred HhhhcCCCC----cHHHHHHHH------------HHH-------------HHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 041786 89 KCTAFNCQQ----CVLLYNSLH------------VCF-------------VRMIRKGFVPDKRTHTILVNAWCSSGKMRE 139 (260)
Q Consensus 89 ~m~~~~~~~----~~~~~~~li------------~~~-------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 139 (260)
+..+.. | +...+..+. .++ ++..+. .+.+...+..+...|.+.|++++
T Consensus 96 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 96 KVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRELRAECFIKEGEPRK 172 (359)
T ss_dssp HHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHCCCHHH
Confidence 998753 4 333443331 111 222222 22356788889999999999999
Q ss_pred HHHHHHHHHhCCCC---------------CCHHHHHHHHHHHHHCCCCCChhchH------------HHHHHHHhcCC--
Q 041786 140 AQEFLQELSDKGFN---------------PPVRSAKQMVNKMIKQGSVPDLETFN------------SLIETICKSGE-- 190 (260)
Q Consensus 140 a~~~~~~m~~~~~~---------------~~~~~a~~l~~~m~~~g~~p~~~~~~------------~li~~~~~~~~-- 190 (260)
|.+.+++..+.... .+...|...|....+... .+...+. .+...+.+.|+
T Consensus 173 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998765321 122277777877766531 1233332 22455677777
Q ss_pred ---------CCCCcch-----HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHH
Q 041786 191 ---------LGLCADV-----NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFF 244 (260)
Q Consensus 191 ---------~~~~~~~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~ 244 (260)
....|+. ..+..+-..|.+.|++++|...|++..+.. |+... |++++|...|
T Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 252 DATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1222322 335556788899999999999999988753 43322 9999999999
Q ss_pred HHHHhc
Q 041786 245 SEMQIK 250 (260)
Q Consensus 245 ~~m~~~ 250 (260)
++..+.
T Consensus 330 ~~a~~~ 335 (359)
T 3ieg_A 330 EAAQEH 335 (359)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 988754
No 39
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.30 E-value=0.00015 Score=62.27 Aligned_cols=106 Identities=12% Similarity=0.096 Sum_probs=65.0
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH---------
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--------- 109 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--------- 109 (260)
+...+....|.+.|+...+. .|+...|..+...|.+.|++++|...|++..+.. +.+..+|..+..++
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 33344445777777777654 3556777777888888888888888888877653 12344444444333
Q ss_pred ----HHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 110 ----VRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 110 ----~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
++..+. .| +...|..+...|.+.|++++|.+.|++..+
T Consensus 330 ~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 330 KEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122221 22 345666667777777777777777776654
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.29 E-value=5e-05 Score=55.66 Aligned_cols=141 Identities=16% Similarity=0.050 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 141 (260)
++..|..|=..|.+.|++++|+..|++..+.. | +...|..+-..|.+.|++++|.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~~~~~~a~ 59 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------------------------PNNVETLLKLGKTYMDIGLPNDAI 59 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 56789999999999999999999999987632 3 4556777777788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCC-cchHHHHHHHHhhhh
Q 041786 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLC-ADVNTNKISIPAVSK 209 (260)
Q Consensus 142 ~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~-~~~~t~~~li~~~~~ 209 (260)
..+....... |+ +...+..+-..+...++ .... -+...+..+-..|.+
T Consensus 60 ~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 60 ESLKKFVVLD--TT------------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS 119 (184)
T ss_dssp HHHHHHHHHC--CC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--ch------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 8887765432 11 12222222233333333 1112 245566677777888
Q ss_pred hccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHh
Q 041786 210 EFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~ 249 (260)
.|++++|...|++..+.. |+... |++++|+..|++..+
T Consensus 120 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 120 MGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888888888877643 33222 888888888877654
No 41
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.27 E-value=3.7e-05 Score=52.51 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
..|..+...+.+.|++++|..+|+++.+.+ ..+...+..+...+...|++++|...|
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PRSAEAWYNLGNAYYKQGDYDEAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----------------------CcchhHHHHHHHHHHHhcCHHHHHHHH
Confidence 357788889999999999999999887632 124556666677777777777777777
Q ss_pred HHHHh
Q 041786 145 QELSD 149 (260)
Q Consensus 145 ~~m~~ 149 (260)
+++.+
T Consensus 59 ~~~~~ 63 (136)
T 2fo7_A 59 QKALE 63 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 42
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.25 E-value=2.1e-05 Score=61.30 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=102.3
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTI 126 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~ 126 (260)
+|++++..............|..+-..|...|++++|+..|++..+.. +............++..
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR---------------EKTLGKDHPAVAATLNN 90 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH---------------HHHcCCcchHHHHHHHH
Confidence 566666665443333457788999999999999999999999887520 00000111224567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC----------------
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE---------------- 190 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~---------------- 190 (260)
+-..|...|++++|.+.|++..+. +..............+..+-..|...|+
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEI------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999876542 2221111111224456666666666666
Q ss_pred ---CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 191 ---LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 191 ---~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
....| ...++..+-..|.+.|++++|...|++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11133 3567888889999999999999999888753
No 43
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.23 E-value=3.9e-05 Score=55.69 Aligned_cols=142 Identities=14% Similarity=0.016 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~ 64 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----------------------AFDVDVALHLGIAYVKTGAVDRGTEL 64 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----------------------SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------ccChHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567778889999999999999999877521 23567788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC------------CCCCcchHHHHHHHHhhhhhc
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------------LGLCADVNTNKISIPAVSKEF 211 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~------------~~~~~~~~t~~~li~~~~~~g 211 (260)
+++..+.. +.+...+..+...|...|+ .....+...+..+...+...|
T Consensus 65 ~~~~~~~~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 124 (186)
T 3as5_A 65 LERSLADA--------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124 (186)
T ss_dssp HHHHHHHC--------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcC--------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence 99877532 2244556666666666666 112235667778888899999
Q ss_pred cHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhc
Q 041786 212 MIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~ 250 (260)
++++|...|++..+.. |+... |+.++|...+++....
T Consensus 125 ~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 125 RFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999887654 32211 8999999999887654
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.23 E-value=3.6e-05 Score=58.48 Aligned_cols=145 Identities=17% Similarity=0.062 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041786 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140 (260)
Q Consensus 61 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 140 (260)
+++...+..+-..+.+.|++++|...|++..+.. +-+...|..+-..+.+.|++++|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p~~~~a~~~lg~~~~~~g~~~~A 58 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-----------------------PQDPEALYWLARTQLKLGLVNPA 58 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----------------------SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 4567788899999999999999999999877532 13567788888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhc-----------CC-----------CCCCc-ch
Q 041786 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS-----------GE-----------LGLCA-DV 197 (260)
Q Consensus 141 ~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~-----------~~-----------~~~~~-~~ 197 (260)
+..|++..+.. |+ +...+..+-..|... |+ ....| +.
T Consensus 59 ~~~~~~al~~~--P~------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 118 (217)
T 2pl2_A 59 LENGKTLVART--PR------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118 (217)
T ss_dssp HHHHHHHHHHC--TT------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhC--CC------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence 99999887632 11 344555555555555 54 22344 46
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHhc
Q 041786 198 NTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 198 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~~ 250 (260)
..|..+-..|...|++++|...|++..+.. .+... |++++|+..|++....
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678888889999999999999999998876 22222 9999999999988764
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.16 E-value=0.00012 Score=56.89 Aligned_cols=181 Identities=12% Similarity=-0.000 Sum_probs=112.6
Q ss_pred chHHHHHHHHhcccCCC-C--CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC
Q 041786 44 SELSMWKTIELMKPDSL-S--VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD 120 (260)
Q Consensus 44 ~~~~a~~~~~~m~~~g~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~ 120 (260)
...+|.+.|+.+.+... . .+...|..+...|...|++++|...|++..+.. +.+
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----------------------~~~ 76 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----------------------PDM 76 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------CCC
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----------------------CCc
Confidence 33488888888876532 1 246788899999999999999999999988632 135
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------------CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHH
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGF---------------NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------------~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 185 (260)
...|..+-..|.+.|++++|...|++..+..- ..+..+|...|+...+.. |+.......+..+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 77888899999999999999999998876431 111225666666655432 3333223333333
Q ss_pred HhcCC------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcC---CCc-----------ccHHH
Q 041786 186 CKSGE------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF---PSL-----------GQFDD 239 (260)
Q Consensus 186 ~~~~~------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~-----------g~~~~ 239 (260)
...|+ ....++...+. +...+...++.++|...+++..+...... ... |++++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 33333 11112222222 44445555566666666665543321110 111 89999
Q ss_pred HHHHHHHHHhc
Q 041786 240 AFCFFSEMQIK 250 (260)
Q Consensus 240 a~~~~~~m~~~ 250 (260)
|...|++....
T Consensus 234 A~~~~~~al~~ 244 (275)
T 1xnf_A 234 ATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999888754
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.15 E-value=0.00018 Score=55.14 Aligned_cols=189 Identities=10% Similarity=0.022 Sum_probs=130.1
Q ss_pred hhhhhHHHHHHHHcc--cchhHHHHHhhhhhcchHHHHHHHHhcccCC--CCCC----HHHHHHHHHHHHhcCChHHHHH
Q 041786 14 YFAAVNHIANIVRHD--IYAERTLNRLNLTLISELSMWKTIELMKPDS--LSVF----PQTLSLIIEEFGKHGLIDNAVE 85 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~~~li~~~~~~~~~~~a~~ 85 (260)
+..++..+...+..+ ......+-..+...+...+|.+.++...+.. ..++ ...|..+...|.+.|++++|..
T Consensus 21 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 21 FDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp HHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 334444444444433 3334445555666777778999998875532 1122 5788999999999999999999
Q ss_pred HHHHhhhcCCCCcHHHHHHHHH------HHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 041786 86 VFNKCTAFNCQQCVLLYNSLHV------CFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158 (260)
Q Consensus 86 ~~~~m~~~~~~~~~~~~~~li~------~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 158 (260)
.|++..+.. |+...+..+-. .++.... ..| +...|..+-..+.+.|++++|...|++..+..
T Consensus 101 ~~~~a~~~~--~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 169 (258)
T 3uq3_A 101 YYQKSLTEH--RTADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA------- 169 (258)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhcC--chhHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------
Confidence 999998754 44443333321 1122222 223 45677888889999999999999999877532
Q ss_pred HHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 159 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
+.+...|..+...|.+.|+ ....| +...|..+-..|.+.|+.++|...|++..+.
T Consensus 170 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 170 -------------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 2346677778888888887 12223 4678888999999999999999999988754
No 47
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.09 E-value=8.9e-05 Score=58.67 Aligned_cols=165 Identities=13% Similarity=0.044 Sum_probs=102.4
Q ss_pred HHHHhhhhhcchHHHHHHHHhcccC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHH
Q 041786 34 TLNRLNLTLISELSMWKTIELMKPD-------SLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLH 106 (260)
Q Consensus 34 ~~~~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 106 (260)
.+-..+...+...+|.+.++...+. ........+..+...|...|++++|...|++..+..
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------ 99 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------------ 99 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 3444455555666777777776542 122335667777777888888888888877766420
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHH
Q 041786 107 VCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETIC 186 (260)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~ 186 (260)
+.............+..+...|...|++++|.+.|++..+. ...............+..+-..|.
T Consensus 100 ---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 100 ---EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------------REKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp ---HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------HHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------HHHhcCCCChHHHHHHHHHHHHHH
Confidence 00000111224567888889999999999999999876642 111100111112334555555555
Q ss_pred hcCC-------------------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 187 KSGE-------------------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 187 ~~~~-------------------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
..|+ .+..| ....+..+...|...|++++|...|++..+
T Consensus 165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665 12133 355788888999999999999999988875
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.07 E-value=0.00015 Score=57.33 Aligned_cols=181 Identities=12% Similarity=0.013 Sum_probs=106.0
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc------CCCCc-
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPD------SL-SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF------NCQQC- 98 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~- 98 (260)
..+-.++...+...+|.+.++...+. +- ......|..+...|...|++++|...|++..+. +-.|.
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 33444555566677999999887543 22 234678889999999999999999999998764 22222
Q ss_pred HHHHHHHHHHH-------------HHHHhC------CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 041786 99 VLLYNSLHVCF-------------VRMIRK------GFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158 (260)
Q Consensus 99 ~~~~~~li~~~-------------~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 158 (260)
...+..+-.++ ++..+. +-.| ....+..+...|.+.|++++|.+.|++..+.
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 224 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR-------- 224 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 22333333332 111111 1122 2346667777778888888888887765531
Q ss_pred HHHHHHHHHHCCCCCChhchHHHHHHHHhcCC------------------C-CCCcchHHHHHHHHhhhhhccHHHHHHH
Q 041786 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE------------------L-GLCADVNTNKISIPAVSKEFMIDEAFRL 219 (260)
Q Consensus 159 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~------------------~-~~~~~~~t~~~li~~~~~~g~~~~a~~~ 219 (260)
.....-....+...........+...+. . ....+..++..+...|.+.|++++|...
T Consensus 225 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 225 ----AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp ----HHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111111222333333333333333333 0 1123456788899999999999999999
Q ss_pred HHHHHH
Q 041786 220 LCNLVE 225 (260)
Q Consensus 220 ~~~m~~ 225 (260)
|++..+
T Consensus 301 ~~~al~ 306 (311)
T 3nf1_A 301 EEAAMR 306 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.03 E-value=1.7e-05 Score=67.82 Aligned_cols=172 Identities=10% Similarity=-0.037 Sum_probs=113.0
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhcCCCCcHHHHHHHHHHH-------------HHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLI-DNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------------VRM 112 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------------~~m 112 (260)
.+.+.++...+.. ..+...|..+-..|...|++ ++|+..|++..+.. +-+...|..+-.++ ++.
T Consensus 86 ~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 86 KTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555543322 23566777777777777777 88888777776653 12244555555444 111
Q ss_pred HhCCCCCCHhhHHHHHHHHhcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHH
Q 041786 113 IRKGFVPDKRTHTILVNAWCSS---------GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIE 183 (260)
Q Consensus 113 ~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~ 183 (260)
. .+.|+...+..+-..|.+. |++++|++.|++..+.. +-+...|..+-.
T Consensus 164 l--~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~lg~ 221 (474)
T 4abn_A 164 L--THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------------------VLDGRSWYILGN 221 (474)
T ss_dssp H--TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHH
T ss_pred H--hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHH
Confidence 2 3457778888888899998 99999999999877632 123455555555
Q ss_pred HHHhc--------CC-----------CCCCc----chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc------
Q 041786 184 TICKS--------GE-----------LGLCA----DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL------ 234 (260)
Q Consensus 184 ~~~~~--------~~-----------~~~~~----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~------ 234 (260)
.|... |+ ....| +...|..+-..|...|++++|...|++..+.. |+...
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~ 299 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 55554 33 12234 67788899999999999999999999987653 33322
Q ss_pred ------ccHHHHHHHH
Q 041786 235 ------GQFDDAFCFF 244 (260)
Q Consensus 235 ------g~~~~a~~~~ 244 (260)
|++++|+..+
T Consensus 300 ~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 300 QLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777544
No 50
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.96 E-value=0.0016 Score=56.22 Aligned_cols=159 Identities=8% Similarity=-0.078 Sum_probs=94.9
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCH--hhH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK--RTH 124 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~--~~~ 124 (260)
+|.++++.-.+.-.+-+...|..+...+.+.|++++|..+|+...+. .|+. ..|
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~------------------------~p~~~~~~~ 359 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI------------------------EDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------------------------SSSCHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc------------------------cccCchHHH
Confidence 67788877654212235788888888888899999999999987763 2321 356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHH-HHhcCC-----------CC
Q 041786 125 TILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIET-ICKSGE-----------LG 192 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~-~~~~~~-----------~~ 192 (260)
......+.+.|++++|.++|++..+.. |. +...|...... +...|+ ..
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~------------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKAREDA--RT------------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCT--TC------------------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcc--CC------------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 666666666666666666666655421 10 00000000000 011222 00
Q ss_pred CCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCC-CcCCCc-------------ccHHHHHHHHHHHHh
Q 041786 193 LCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH-KLFPSL-------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 193 ~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~-------------g~~~~a~~~~~~m~~ 249 (260)
..| +...|..++..+.+.|+.++|..+|++....+. .|.... |+.+.+..+++.+.+
T Consensus 420 ~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 420 KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 113 356677777778888888888888888877642 232111 888888888777654
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.95 E-value=0.0037 Score=48.65 Aligned_cols=178 Identities=11% Similarity=-0.081 Sum_probs=94.7
Q ss_pred hhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-------
Q 041786 41 TLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGK----HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF------- 109 (260)
Q Consensus 41 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~------- 109 (260)
..+...+|.+.|+...+. -+...+..+-..|.+ .+++++|...|++..+.+ +...+..+-.++
T Consensus 18 ~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVS 91 (273)
T ss_dssp HTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred hCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcc
Confidence 334444666666665552 244566666666776 777777777777766544 223333222211
Q ss_pred ----------HHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCCh
Q 041786 110 ----------VRMIRKGFVPDKRTHTILVNAWCS----SGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDL 175 (260)
Q Consensus 110 ----------~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~ 175 (260)
++..+.+ +...+..+-..|.+ .+++++|.+.|++..+.+ +.
T Consensus 92 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------~~ 146 (273)
T 1ouv_A 92 QNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------------------DG 146 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----------------------CH
T ss_pred cCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----------------------cH
Confidence 1112222 45566666666776 777777777777666543 12
Q ss_pred hchHHHHHHHHh----cCC-----------CCCCcchHHHHHHHHhhhh----hccHHHHHHHHHHHHHCCCCcCCC---
Q 041786 176 ETFNSLIETICK----SGE-----------LGLCADVNTNKISIPAVSK----EFMIDEAFRLLCNLVEDGHKLFPS--- 233 (260)
Q Consensus 176 ~~~~~li~~~~~----~~~-----------~~~~~~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~--- 233 (260)
..+..+-..|.. .++ ... -+...+..+-..|.. .++.++|...|++..+.+. +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l 224 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 222222222222 111 000 123445555566666 7777888777777766543 1110
Q ss_pred ----------cccHHHHHHHHHHHHhcC
Q 041786 234 ----------LGQFDDAFCFFSEMQIKT 251 (260)
Q Consensus 234 ----------~g~~~~a~~~~~~m~~~g 251 (260)
.++.++|...|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 156677777776665443
No 52
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.94 E-value=0.0011 Score=51.38 Aligned_cols=181 Identities=13% Similarity=0.037 Sum_probs=106.7
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC------CCC-c
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPD------SL-SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN------CQQ-C 98 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~-~ 98 (260)
..+-..+...+...+|.+.++...+. +- ......|..+-..|...|++++|...|++..+.. -.| .
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 126 (283)
T 3edt_B 47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 33444455566666888888776433 22 2346788899999999999999999999887641 112 2
Q ss_pred HHHHHHHHHHH-------------HHHHhC------CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 041786 99 VLLYNSLHVCF-------------VRMIRK------GFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRS 158 (260)
Q Consensus 99 ~~~~~~li~~~-------------~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 158 (260)
..++..+-.++ ++..+. +-.| ....+..+-..|.+.|++++|.+.|++..+.
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------- 198 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR-------- 198 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 33344443333 111111 1122 3456777777888888888888888765531
Q ss_pred HHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-------------------CCCCcchHHHHHHHHhhhhhccHHHHHHH
Q 041786 159 AKQMVNKMIKQGSVPDLETFNSLIETICKSGE-------------------LGLCADVNTNKISIPAVSKEFMIDEAFRL 219 (260)
Q Consensus 159 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-------------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~ 219 (260)
..........+....+...+..+...+. .........+..+...|...|++++|...
T Consensus 199 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 199 ----AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp ----HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111223333333333333222222 11122356788889999999999999999
Q ss_pred HHHHHH
Q 041786 220 LCNLVE 225 (260)
Q Consensus 220 ~~~m~~ 225 (260)
|++..+
T Consensus 275 ~~~al~ 280 (283)
T 3edt_B 275 EDCASR 280 (283)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988765
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.93 E-value=0.0013 Score=47.93 Aligned_cols=149 Identities=15% Similarity=0.055 Sum_probs=97.7
Q ss_pred hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--
Q 041786 32 ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-- 109 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-- 109 (260)
+..+-..+...+...+|.+.|++..+.. +-+...|..+...|.+.|++++|...+......... +...+..+-.++
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHH
Confidence 3445555666677778999998876543 225788999999999999999999999988765422 122222222111
Q ss_pred -----------HHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhc
Q 041786 110 -----------VRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLET 177 (260)
Q Consensus 110 -----------~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~ 177 (260)
.+.. .+.| +...+..+-..|.+.|++++|++.|++..+. .|
T Consensus 86 ~~~~~~a~~~~~~a~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---------------------~p---- 138 (184)
T 3vtx_A 86 IDEKQAAIDALQRAI--ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---------------------KP---- 138 (184)
T ss_dssp TTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CT----
T ss_pred cCCHHHHHHHHHHHH--HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---------------------cc----
Confidence 1111 1122 3455666666677777777777777665541 11
Q ss_pred hHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 178 FNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
-+...|..+-..|.+.|++++|...|++..+.
T Consensus 139 -----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 -----------------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----------------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 23556777778889999999999999988764
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.91 E-value=0.00013 Score=65.57 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-KRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~ 142 (260)
...|+.|-..|.+.|++++|+..|++..+. .|+ ...|+.+-..|.+.|++++|++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l------------------------~P~~~~a~~nLg~~l~~~g~~~eA~~ 64 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV------------------------FPEFAAAHSNLASVLQQQGKLQEALM 64 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 678999999999999999999999988763 243 5667777777788888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhh
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSK 209 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~ 209 (260)
.|++..+. .| +...|..+-..|.+.|+ ..+.| +...|+.+-..|..
T Consensus 65 ~~~~Al~l---------------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 65 HYKEAIRI---------------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp HHHHHHHH---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88776652 23 34566666666666666 22334 35678888888888
Q ss_pred hccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHH
Q 041786 210 EFMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~ 248 (260)
.|++++|...|++..+. .|+... |++++|.+.+++..
T Consensus 124 ~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 124 SGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp TTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 88999998888887764 344332 66666666665544
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.89 E-value=0.00024 Score=60.72 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=77.0
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhc---------CC-
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS---------GE- 190 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~---------~~- 190 (260)
...|..+-..|.+.|++++|.+.|++..+. .|+...+..+-..|... |+
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~ 195 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTH---------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHV 195 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------------CCCHHHHHHHHHHHHHhccCChhhhhhhH
Confidence 567777777777778888887777776653 35555556666666555 44
Q ss_pred ----------CCCCc-chHHHHHHHHhhhhh--------ccHHHHHHHHHHHHHCCCCc---CCCc------------cc
Q 041786 191 ----------LGLCA-DVNTNKISIPAVSKE--------FMIDEAFRLLCNLVEDGHKL---FPSL------------GQ 236 (260)
Q Consensus 191 ----------~~~~~-~~~t~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p---~~~~------------g~ 236 (260)
....| +...|..+-..|... |++++|...|++..+.. | +... |+
T Consensus 196 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCC
Confidence 22234 467888888999988 99999999999998753 3 2222 99
Q ss_pred HHHHHHHHHHHHhc
Q 041786 237 FDDAFCFFSEMQIK 250 (260)
Q Consensus 237 ~~~a~~~~~~m~~~ 250 (260)
+++|...|++....
T Consensus 274 ~~~A~~~~~~al~l 287 (474)
T 4abn_A 274 YGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.84 E-value=0.0011 Score=51.27 Aligned_cols=148 Identities=9% Similarity=-0.048 Sum_probs=94.8
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+...+|.+.|+...+... -+...|..+...|.+.|++++|+..|++..+.+- ..
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------~~ 70 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN--------------------AT 70 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--------------------TT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC--------------------ch
Confidence 34445555688888888765431 2345788888888899999999998888775210 01
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-------
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------- 190 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~------- 190 (260)
......|..+-..|.+.|++++|...|++..+.. +.+...|..+-..|...|+
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------------------TTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------------------cccHHHHHHHHHHHHHccCHHHHHHH
Confidence 1123346677777788888888888887766521 1244567777777777776
Q ss_pred ----CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 191 ----LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 191 ----~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
....| +...|..+-..+...+++++|...|++..+.
T Consensus 131 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 131 MEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23334 3445555552333445888888888888764
No 57
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.76 E-value=0.0003 Score=47.78 Aligned_cols=107 Identities=21% Similarity=0.172 Sum_probs=76.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------C
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------L 191 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~ 191 (260)
.|..+...|.+.|++++|..+|+++.+.+ +.+...+..+...+...|+ .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------------------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46778888999999999999999887532 1234455556666666665 1
Q ss_pred C-CCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHhc
Q 041786 192 G-LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 192 ~-~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~~ 250 (260)
. ...+...+..+...+...|++++|...|+++.+..... ... |+.++|...++++...
T Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 1 12345677788888999999999999999888754211 111 8999999999988754
No 58
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.73 E-value=0.00063 Score=54.45 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=91.2
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC-CCCHhhHHH
Q 041786 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF-VPDKRTHTI 126 (260)
Q Consensus 48 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~-~p~~~~~~~ 126 (260)
+...|+++.+.+ .++...+..+-.++...|++++|++++.+....+ - .-+...+-.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~----------------------~~~~~lea~~l 141 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDND----------------------EAEGTTELLLL 141 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS----------------------CSTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----------------------CCcCcHHHHHH
Confidence 667777776655 4556666677888999999999999998765422 1 124566778
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-----ChhchHHHHHHHHh--cC--C-------
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-----DLETFNSLIETICK--SG--E------- 190 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-----~~~~~~~li~~~~~--~~--~------- 190 (260)
++..+.+.|+++.|...+++|.+. .| +..+...|..++.. .| +
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~---------------------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~ 200 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNA---------------------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYY 200 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---------------------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---------------------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 899999999999999999999863 23 13333334433221 12 1
Q ss_pred ----CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 191 ----LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 191 ----~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
....|+..+-..++.++.+.|++++|+..++.+.+
T Consensus 201 f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 201 YEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22234434444555589999999999999987664
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.73 E-value=0.0089 Score=46.11 Aligned_cols=195 Identities=10% Similarity=0.019 Sum_probs=115.8
Q ss_pred cchhhhhHHHHHHHHccc---chhHHHHHhhhhhcchHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 041786 12 EDYFAAVNHIANIVRHDI---YAERTLNRLNLTLISELSMWKTIELMKPDSLSVF--PQTLSLIIEEFGKHGLIDNAVEV 86 (260)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~ 86 (260)
..+..++..+...+..+. .....+-..+...+...+|.+.++...+.+-.++ ...|..+-..|.+.|++++|+..
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 344555666666555543 3445555667777778899999999876432222 34588999999999999999999
Q ss_pred HHHhhhcCCCCcHHHHHHHHHHH---------HHHHhC--CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 041786 87 FNKCTAFNCQQCVLLYNSLHVCF---------VRMIRK--GFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154 (260)
Q Consensus 87 ~~~m~~~~~~~~~~~~~~li~~~---------~~m~~~--g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 154 (260)
|++..+..- .+..+|..+-.++ ....+. ...|+ ...|..+-..+...+++++|.+.|++..+.. |
T Consensus 97 ~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p 173 (272)
T 3u4t_A 97 YQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--P 173 (272)
T ss_dssp HHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T
T ss_pred HHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--c
Confidence 999887531 2334455444443 111111 22343 3444444413334457777777777665532 2
Q ss_pred CHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------------CCCCcc------hHHHHHHHHhhhhhc
Q 041786 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------------LGLCAD------VNTNKISIPAVSKEF 211 (260)
Q Consensus 155 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------------~~~~~~------~~t~~~li~~~~~~g 211 (260)
+ +...+..+...+...|+ ....|+ ...|..+-..|.+.|
T Consensus 174 ~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 174 N------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp T------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred c------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 1 12333333333333332 001122 256777778888889
Q ss_pred cHHHHHHHHHHHHHCC
Q 041786 212 MIDEAFRLLCNLVEDG 227 (260)
Q Consensus 212 ~~~~a~~~~~~m~~~~ 227 (260)
++++|...|++..+..
T Consensus 236 ~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 236 DKVKADAAWKNILALD 251 (272)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999998887653
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.67 E-value=0.0034 Score=50.02 Aligned_cols=148 Identities=8% Similarity=-0.086 Sum_probs=88.1
Q ss_pred HHHHhhhhhcchHHHHHHHHhcccCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHH
Q 041786 34 TLNRLNLTLISELSMWKTIELMKPDSLSVF-PQ-TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111 (260)
Q Consensus 34 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 111 (260)
.+..+....+...+|.++|+...+. .|+ .. .|..+...+.+.|++++|+.+|++..+.. |
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p-------------- 165 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--R-------------- 165 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--T--------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C--------------
Confidence 3444455566667999999998764 343 33 89999999999999999999999987632 1
Q ss_pred HHhCCCCCCHhhHHHHHHHH-hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 112 MIRKGFVPDKRTHTILVNAW-CSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
++...|....... ...|+.++|..+|+...+.. +-+...|..++..+.+.|+
T Consensus 166 -------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------------------p~~~~~~~~~~~~~~~~g~ 218 (308)
T 2ond_A 166 -------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------------------GDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp -------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHTTCC
T ss_pred -------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------CCcHHHHHHHHHHHHHCCC
Confidence 1122222222221 12467777777766554310 1123333344444444333
Q ss_pred -------------C-CCCc--chHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 191 -------------L-GLCA--DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 191 -------------~-~~~~--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
. ...| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 219 ~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 219 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1233 2445666666677777777777777776654
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.66 E-value=0.0011 Score=59.74 Aligned_cols=146 Identities=11% Similarity=0.021 Sum_probs=103.0
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHH
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPDSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 111 (260)
..+-.++...+...+|.+.|++..+. .| +...|+.|-..|.+.|++++|+..|++..+..
T Consensus 13 ~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----------------- 73 (723)
T 4gyw_A 13 NNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----------------- 73 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 33444555666777899998887554 24 47889999999999999999999999887632
Q ss_pred HHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhcC
Q 041786 112 MIRKGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSG 189 (260)
Q Consensus 112 m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~~ 189 (260)
|+ ...|..+-..|.+.|++++|++.|++..+. .| +...|+.+-..|.+.|
T Consensus 74 -------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l---------------------~P~~~~a~~~Lg~~~~~~g 125 (723)
T 4gyw_A 74 -------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---------------------NPAFADAHSNLASIHKDSG 125 (723)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHHHHHHTT
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHcC
Confidence 33 456666777777777777777777765542 22 3456666666666666
Q ss_pred C-----------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 190 E-----------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 190 ~-----------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
+ ....| +...|..+...|...|++++|.+.+++..+
T Consensus 126 ~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 6 23344 356778888888888999888888877653
No 62
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.61 E-value=0.0042 Score=46.18 Aligned_cols=47 Identities=15% Similarity=-0.090 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHH
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFS 245 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~ 245 (260)
...+..+-..|.+.|+.++|...|++..+. .|....+..+.|+..++
T Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~ 167 (213)
T 1hh8_A 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEPRHSKIDKAMECVW 167 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSGGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CcccccchHHHHHHHHH
Confidence 466778888899999999999999998875 35555577777766665
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.59 E-value=0.0073 Score=45.53 Aligned_cols=88 Identities=9% Similarity=-0.192 Sum_probs=66.0
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+...+|.+.|+...+..-.++...+..+-..+.+.|++++|+..|++..+.
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------------ 71 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------------------------ 71 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------------------------
Confidence 34445555588888887766543356677777888888888888888888877652
Q ss_pred CC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 118 VP-DKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 118 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.| +...|..+-..|.+.|++++|.+.|++..+
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 24 356778888889999999999999998775
No 64
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.58 E-value=0.0031 Score=42.03 Aligned_cols=99 Identities=21% Similarity=0.194 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+...+.+.|++++|...|+++.+.. ..+...+..+...+.+.|++++|...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~la~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PNNAEAWYNLGNAYYKQGDYDEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------cCcHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5678888999999999999999999887532 13566788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
|+++.+.. | .+...+..+...|...|++++|...|+++
T Consensus 66 ~~~~~~~~---------------------~---------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 66 YQKALELD---------------------P---------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHC---------------------T---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC---------------------C---------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99876521 1 12345566677788889999999999988
Q ss_pred HHCC
Q 041786 224 VEDG 227 (260)
Q Consensus 224 ~~~~ 227 (260)
.+..
T Consensus 104 ~~~~ 107 (125)
T 1na0_A 104 LELD 107 (125)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7653
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.54 E-value=0.0008 Score=55.63 Aligned_cols=73 Identities=10% Similarity=-0.000 Sum_probs=47.6
Q ss_pred chHHHHHHHHhcCC-----------------CCC-CcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCC----cCCCc
Q 041786 177 TFNSLIETICKSGE-----------------LGL-CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL 234 (260)
Q Consensus 177 ~~~~li~~~~~~~~-----------------~~~-~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~ 234 (260)
.+..+...|...|+ .+. .....++..+-..|...|++++|...|++..+..-. +....
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 56666777777776 111 112466777888888999999999988877643211 11000
Q ss_pred ------------ccHHHHHHHHHHHHh
Q 041786 235 ------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 235 ------------g~~~~a~~~~~~m~~ 249 (260)
|+.++|...|++...
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888888877653
No 66
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.49 E-value=0.021 Score=44.22 Aligned_cols=182 Identities=10% Similarity=-0.057 Sum_probs=113.7
Q ss_pred hhhhhHHHHHHHHccc-chhHHHHHhhhh----hcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 041786 14 YFAAVNHIANIVRHDI-YAERTLNRLNLT----LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGK----HGLIDNAV 84 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~ 84 (260)
+..++.-+.+...++. .....+-..+.. .....+|.+.|+...+.+ +...+..+-..|.+ .+++++|+
T Consensus 22 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~ 98 (273)
T 1ouv_A 22 FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKAL 98 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 3344444555444432 222333444444 556668999999887775 77888889899999 99999999
Q ss_pred HHHHHhhhcCCCCcHHHHHHHHHHH-----------------HHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHH
Q 041786 85 EVFNKCTAFNCQQCVLLYNSLHVCF-----------------VRMIRKGFVPDKRTHTILVNAWCS----SGKMREAQEF 143 (260)
Q Consensus 85 ~~~~~m~~~~~~~~~~~~~~li~~~-----------------~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~ 143 (260)
..|++..+.+ +...+..+-.++ ++..+.+ +...+..+-..|.+ .+++++|...
T Consensus 99 ~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 172 (273)
T 1ouv_A 99 QYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALAS 172 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998865 444444444332 2223333 45556666666766 7888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHh----cCC-----------CCCCcchHHHHHHHHhhh
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK----SGE-----------LGLCADVNTNKISIPAVS 208 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~~~-----------~~~~~~~~t~~~li~~~~ 208 (260)
|++..+.+ +...+..+-..|.. .++ ....+ ...+..+-..|.
T Consensus 173 ~~~a~~~~----------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~ 229 (273)
T 1ouv_A 173 YDKACDLK----------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTT----------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHCC----------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 88776543 12222333333333 222 00112 445666666677
Q ss_pred h----hccHHHHHHHHHHHHHCC
Q 041786 209 K----EFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 209 ~----~g~~~~a~~~~~~m~~~~ 227 (260)
+ .++.++|...|++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 7 899999999999988765
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.48 E-value=0.0066 Score=45.74 Aligned_cols=123 Identities=10% Similarity=-0.085 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 141 (260)
.|+..|..+-..+.+.|++++|+..|++..+.. ..++...+..+-..+.+.|++++|+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 62 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT----------------------NNQDSVTAYNCGVCADNIKKYKEAA 62 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------TTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc----------------------CCCCcHHHHHHHHHHHHhhcHHHHH
Confidence 356788888889999999999999999887632 1256666767888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCcc-h-------HHHHH
Q 041786 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCAD-V-------NTNKI 202 (260)
Q Consensus 142 ~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~~-~-------~t~~~ 202 (260)
+.|++..+.. |+ +...|..+-..|...|+ ....|+ . ..|..
T Consensus 63 ~~~~~al~~~--p~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 63 DYFDIAIKKN--YN------------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK 122 (228)
T ss_dssp HHHHHHHHTT--CS------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--cc------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 9999887642 11 23344445555555554 111222 1 33555
Q ss_pred HHHhhhhhccHHHHHHHHHHHHHC
Q 041786 203 SIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
+-..+...|++++|...|++..+.
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HhHHHHHhccHHHHHHHHHHHHhc
Confidence 556666777777777777776654
No 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.42 E-value=0.0074 Score=49.95 Aligned_cols=182 Identities=5% Similarity=-0.058 Sum_probs=109.3
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGL-IDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------- 109 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------- 109 (260)
+...+...+|++.++...+.. +-+...|+.+-..+.+.|+ +++|+..|++..+..- -+...|+.+-.++
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHH
Confidence 334445557777777765543 1246777778888888886 8888888888776541 1344555544333
Q ss_pred -----HHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHH
Q 041786 110 -----VRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIE 183 (260)
Q Consensus 110 -----~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~ 183 (260)
++..+ +.| +...|..+-.++.+.|++++|++.|+++.+.+ |+ +...|+.+-.
T Consensus 185 Al~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~------------------~~~a~~~lg~ 242 (382)
T 2h6f_A 185 ELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VR------------------NNSVWNQRYF 242 (382)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TT------------------CHHHHHHHHH
T ss_pred HHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC------------------CHHHHHHHHH
Confidence 22222 233 45677777888888888888888888877642 22 2333444333
Q ss_pred HHHh-cCC----------------CCCCc-chHHHHHHHHhhhhhc--cHHHHHHHHHHHHHCCCCcCCCc---------
Q 041786 184 TICK-SGE----------------LGLCA-DVNTNKISIPAVSKEF--MIDEAFRLLCNLVEDGHKLFPSL--------- 234 (260)
Q Consensus 184 ~~~~-~~~----------------~~~~~-~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~--------- 234 (260)
.|.+ .|. ....| +...|+.+-..+.+.| +.++|...+.++ + ..|+...
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHH
Confidence 3333 221 01223 3556777777777777 578888888776 2 3333322
Q ss_pred ---c---------cHHHHHHHHHHH
Q 041786 235 ---G---------QFDDAFCFFSEM 247 (260)
Q Consensus 235 ---g---------~~~~a~~~~~~m 247 (260)
| ..++|+.+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHH
Confidence 2 247888888887
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.37 E-value=0.0022 Score=50.77 Aligned_cols=53 Identities=8% Similarity=-0.223 Sum_probs=39.3
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVF----PQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
+...+...+|.+.|+...+.... + ...|..+...|...|++++|...+++..+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455556888888887654321 2 46788888999999999999999988664
No 70
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.34 E-value=0.0095 Score=39.50 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=71.0
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCC
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g 116 (260)
..+...+....|.+.++...+.. +.+...+..+...+.+.|++++|...|+++.+..
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------------- 73 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------------------- 73 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------
Confidence 34445556668888888876543 2367889999999999999999999999887532
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 117 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
..+...+..+...|.+.|++++|.+.|++..+.
T Consensus 74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 74 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 235677888899999999999999999987753
No 71
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.33 E-value=0.0021 Score=53.10 Aligned_cols=196 Identities=14% Similarity=0.002 Sum_probs=116.8
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCCc-HHHHHHHHHH
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFP----QTLSLIIEEFGKHGLIDNAVEVFNKCTAF----NCQQC-VLLYNSLHVC 108 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~ 108 (260)
.+...+...+|.+.|+...+.... +. ..|..+-..|...|++++|...|++..+. +-.|. ..++..+-.+
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 344556666899999887665321 22 57888889999999999999999887653 11111 2223333222
Q ss_pred H-------------HHH----HhCCCCC-CHhhHHHHHHHHhccCC-----------------HHHHHHHHHHHHhCCCC
Q 041786 109 F-------------VRM----IRKGFVP-DKRTHTILVNAWCSSGK-----------------MREAQEFLQELSDKGFN 153 (260)
Q Consensus 109 ~-------------~~m----~~~g~~p-~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~~~~ 153 (260)
+ ++. .+.+-.| ....+..+-..|...|+ +++|.+.+++..+
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~---- 211 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK---- 211 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH----
Confidence 2 111 1111111 23466667777777777 7777666664332
Q ss_pred CCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhcCC------------------CCCCcchHHHHHHHHhhhhhccHH
Q 041786 154 PPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGE------------------LGLCADVNTNKISIPAVSKEFMID 214 (260)
Q Consensus 154 ~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~~~------------------~~~~~~~~t~~~li~~~~~~g~~~ 214 (260)
+.... +..| ....+..+-..|...|+ .........+..+...|...|+++
T Consensus 212 --------~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 212 --------LMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp --------HHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred --------HHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 22211 1111 23356666667777776 111112347888889999999999
Q ss_pred HHHHHHHHHHHCCCCc-CC---Cc------------ccHHHHHHHHHHHHh
Q 041786 215 EAFRLLCNLVEDGHKL-FP---SL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 215 ~a~~~~~~m~~~~~~p-~~---~~------------g~~~~a~~~~~~m~~ 249 (260)
+|...|++..+..... +. .. |++++|...+++...
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998876542111 00 00 999999999987654
No 72
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.33 E-value=0.013 Score=46.90 Aligned_cols=166 Identities=15% Similarity=0.046 Sum_probs=108.4
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSL-SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
-..+...+...+|++++..-...|- .-+...+..++..+.+.|+++.|.+.+++|.+.
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------------------- 165 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------------------- 165 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------
Confidence 3334445666699999988755543 235788889999999999999999999999863
Q ss_pred CCCCC-----CHhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHH
Q 041786 115 KGFVP-----DKRTHTILVNAWCS----SGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETI 185 (260)
Q Consensus 115 ~g~~p-----~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 185 (260)
.| +..+...|..++.. .++..+|..+|+++.+. .|+..+-..++.++
T Consensus 166 ---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---------------------~p~~~~~~lLln~~ 221 (310)
T 3mv2_B 166 ---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---------------------FPTWKTQLGLLNLH 221 (310)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---------------------SCSHHHHHHHHHHH
T ss_pred ---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---------------------CCCcccHHHHHHHH
Confidence 24 24444555555322 33788888888887653 23322223333455
Q ss_pred HhcCC-----------CCC-----------CcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-ccHHHHHH
Q 041786 186 CKSGE-----------LGL-----------CADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-GQFDDAFC 242 (260)
Q Consensus 186 ~~~~~-----------~~~-----------~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-g~~~~a~~ 242 (260)
.+.|+ ... .-|..+...+|......|+ +|.+++.++++.. |+... -+..+...
T Consensus 222 ~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp~i~d~~~k~~ 297 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHAFIKHHQEIDA 297 (310)
T ss_dssp HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCChHHHHHHHHHH
Confidence 55555 011 2256666555555555676 8899999998753 44433 77788888
Q ss_pred HHHHHHhc
Q 041786 243 FFSEMQIK 250 (260)
Q Consensus 243 ~~~~m~~~ 250 (260)
.|++...+
T Consensus 298 ~Fd~~~~k 305 (310)
T 3mv2_B 298 KFDELVRK 305 (310)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88887754
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.32 E-value=0.0038 Score=46.73 Aligned_cols=137 Identities=8% Similarity=-0.061 Sum_probs=91.2
Q ss_pred cchHHHHHHHHhcccCCCCCC-HHHHHH----------------HHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHH
Q 041786 43 ISELSMWKTIELMKPDSLSVF-PQTLSL----------------IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSL 105 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~g~~~~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 105 (260)
+...+|.+.|+...+. .|+ ...|.. +-..|.+.|++++|+..|++..+.
T Consensus 18 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------ 83 (208)
T 3urz_A 18 GQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK------------ 83 (208)
T ss_dssp TCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------
Confidence 3444666666665443 232 344444 888999999999999999988763
Q ss_pred HHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHH
Q 041786 106 HVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIE 183 (260)
Q Consensus 106 i~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~ 183 (260)
.| +...|..+-..|...|++++|.+.|++..+. .| +...|..+-.
T Consensus 84 ------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~P~~~~a~~~lg~ 130 (208)
T 3urz_A 84 ------------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---------------------EADNLAANIFLGN 130 (208)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------CTTCHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCCCHHHHHHHHH
Confidence 24 4677888889999999999999999988763 23 3445555555
Q ss_pred HHHhcCC-----------CCCCcchH--HHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 184 TICKSGE-----------LGLCADVN--TNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 184 ~~~~~~~-----------~~~~~~~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
.|...|. .-..|+.. .+..+-.++...|++++|...|++..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5443332 11223322 2333344566788999999999987764
No 74
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.32 E-value=0.012 Score=41.88 Aligned_cols=123 Identities=10% Similarity=-0.087 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+...|..+-..+.+.|++++|+..|++..+.. .-+...|..+-..|.+.|++++|+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~~~~~~~~l~~~~~~~g~~~~A~~ 66 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----------------------PANPIYLSNRAAAYSASGQHEKAAE 66 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CcCHHHHHHHHHHHHHccCHHHHHH
Confidence 46778888899999999999999999887632 1256788888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
.|++..+. .|+ +...|..+-..|...|++++|...|++
T Consensus 67 ~~~~al~~---------------------~p~---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 67 DAELATVV---------------------DPK---------------------YSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHHH---------------------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHh---------------------CCC---------------------CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99987752 122 245566677788888999999999998
Q ss_pred HHHCCCCcCCCc----ccHHHHHHHHHHHHhcCC
Q 041786 223 LVEDGHKLFPSL----GQFDDAFCFFSEMQIKTH 252 (260)
Q Consensus 223 m~~~~~~p~~~~----g~~~~a~~~~~~m~~~g~ 252 (260)
..+.. |+... ..+..+..-+.+......
T Consensus 105 al~~~--p~~~~~~~~~~l~~~~~~~~~~~~~~~ 136 (164)
T 3sz7_A 105 GIEAE--GNGGSDAMKRGLETTKRKIEEANRGAE 136 (164)
T ss_dssp HHHHH--SSSCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhC--CCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 87643 33332 334445555555554433
No 75
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.31 E-value=0.0033 Score=45.61 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
.+..+...+.+.|++++|...|++..+. .| +...+..+-..+.+.|++++|+..|
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~P~~~~a~~~la~~~~~~g~~~~A~~~~ 63 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE------------------------LQSRGDVKLAKADCLLETKQFELAQELL 63 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH------------------------HHTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3556667888999999999999987752 23 4667888888999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHH---HHHHCCCCCChhchHHHHHHHHhcCCCCCCc-chHHHHHHHHhhhhhccHHHHHHHH
Q 041786 145 QELSDKGFNPPVRSAKQMVN---KMIKQGSVPDLETFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFMIDEAFRLL 220 (260)
Q Consensus 145 ~~m~~~~~~~~~~~a~~l~~---~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~ 220 (260)
+...... |+.. ...+.. .....+...-...+...+. ..| +...+..+-..+...|++++|...|
T Consensus 64 ~~a~~~~--p~~~-~~~~~~~~~~~~~~~~~~a~~~~~~al~---------~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 64 ATIPLEY--QDNS-YKSLIAKLELHQQAAESPELKRLEQELA---------ANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp TTCCGGG--CCHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHH---------HSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhhcc--CChH-HHHHHHHHHHHhhcccchHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 8765432 2211 111111 1111111100111211111 234 4677888888999999999999999
Q ss_pred HHHHHCCCCcCC-Cc-----------ccHHHHHHHHHHHHh
Q 041786 221 CNLVEDGHKLFP-SL-----------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 221 ~~m~~~~~~p~~-~~-----------g~~~~a~~~~~~m~~ 249 (260)
++..+..-.+.. .. |+.++|...|++...
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 998876533221 11 888888888876543
No 76
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.27 E-value=0.0046 Score=48.87 Aligned_cols=151 Identities=9% Similarity=0.089 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREA 140 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 140 (260)
.+...+..+-..+.+.|++++|...|++..+. .| +...+..+-..+.+.|++++|
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~P~~~~a~~~la~~~~~~g~~~~A 170 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL------------------------SNQNGEIGLLLAETLIALNRSEDA 170 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------TTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------------CCcchhHHHHHHHHHHHCCCHHHH
Confidence 34566777888899999999999999988763 24 456778888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH--HHHHHHCCCCCChhchHHHHHHHHhcCCCCCCc-chHHHHHHHHhhhhhccHHHHH
Q 041786 141 QEFLQELSDKGFNPPVRSAKQM--VNKMIKQGSVPDLETFNSLIETICKSGELGLCA-DVNTNKISIPAVSKEFMIDEAF 217 (260)
Q Consensus 141 ~~~~~~m~~~~~~~~~~~a~~l--~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~-~~~t~~~li~~~~~~g~~~~a~ 217 (260)
...+++..... |+....... ..........+....|...+. ..| +...+..+-..|...|+.++|.
T Consensus 171 ~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~---------~~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 171 EAVLXTIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVA---------ENPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp HHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHh---------cCCccHHHHHHHHHHHHHcccHHHHH
Confidence 99998765432 222210000 000011111111111111111 123 4667788888899999999999
Q ss_pred HHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHH
Q 041786 218 RLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEM 247 (260)
Q Consensus 218 ~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m 247 (260)
..|+++.+..-...... |+.++|...+++-
T Consensus 240 ~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 240 ELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999887642211111 6667776666543
No 77
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.26 E-value=0.002 Score=52.78 Aligned_cols=54 Identities=7% Similarity=-0.245 Sum_probs=39.8
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVF----PQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
.+...+...+|.+.|+...+.+. .+ ...|..+-..|...|++++|...|++...
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34445566688888888765532 12 35788888999999999999999988654
No 78
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.25 E-value=0.0099 Score=40.08 Aligned_cols=101 Identities=10% Similarity=-0.013 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041786 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140 (260)
Q Consensus 61 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 140 (260)
..+...|..+...+.+.|++++|...|++..+.. ..+...+..+-..|...|++++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----------------------~~~~~~~~~la~~~~~~~~~~~A 69 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----------------------PKDAKLYSNRAACYTKLLEFQLA 69 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----------------------TTCHHHHHHHHHHHTTTTCHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------CCcHHHHHHHHHHHHHhccHHHH
Confidence 3457788889999999999999999999877521 12567788888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHH
Q 041786 141 QEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLL 220 (260)
Q Consensus 141 ~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~ 220 (260)
.+.|++..+. .|+ +...+..+-..|.+.|++++|...|
T Consensus 70 ~~~~~~a~~~---------------------~~~---------------------~~~~~~~la~~~~~~~~~~~A~~~~ 107 (133)
T 2lni_A 70 LKDCEECIQL---------------------EPT---------------------FIKGYTRKAAALEAMKDYTKAMDVY 107 (133)
T ss_dssp HHHHHHHHHH---------------------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHh---------------------CCC---------------------chHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999887652 121 2345566667788888999999999
Q ss_pred HHHHHC
Q 041786 221 CNLVED 226 (260)
Q Consensus 221 ~~m~~~ 226 (260)
++..+.
T Consensus 108 ~~~~~~ 113 (133)
T 2lni_A 108 QKALDL 113 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
No 79
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.24 E-value=0.0071 Score=39.38 Aligned_cols=102 Identities=12% Similarity=-0.002 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+...|..+...+.+.|++++|...|++..+.. ..+...|..+-..+.+.|++++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~~~~~~~~a~~~~~~~~~~~A~~ 61 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-----------------------PEESKYWLMKGKALYNLERYEEAVD 61 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----------------------CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----------------------cCCHHHHHHHHHHHHHccCHHHHHH
Confidence 34567777888889999999999999877532 1245677778888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhh-ccHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKE-FMIDEAFRLLC 221 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~-g~~~~a~~~~~ 221 (260)
.|++..+. .|+ ..+...+..+...+.+. |++++|.+.|+
T Consensus 62 ~~~~a~~~---------------------~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 62 CYNYVINV---------------------IED-------------------EYNKDVWAAKADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHHHHHT---------------------SCC-------------------TTCHHHHHHHHHHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHHh---------------------Ccc-------------------cchHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 98877752 122 01345566777778888 89999999998
Q ss_pred HHHHCC
Q 041786 222 NLVEDG 227 (260)
Q Consensus 222 ~m~~~~ 227 (260)
......
T Consensus 102 ~~~~~~ 107 (112)
T 2kck_A 102 RAKLEH 107 (112)
T ss_dssp HHGGGC
T ss_pred HHhhcc
Confidence 887654
No 80
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.22 E-value=0.01 Score=41.82 Aligned_cols=99 Identities=14% Similarity=-0.063 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+...+..+-..+.+.|++++|...|+...... +.+...|..+-.+|.+.|++++|..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~~~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----------------------HYDSRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------------------cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 35667778889999999999999999887532 1356777788888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
.|++.... .|+ +...|..+-.+|...|++++|...|+.
T Consensus 77 ~~~~al~l---------------------~p~---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 77 SYSYGAVM---------------------DIX---------------------EPRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHHH---------------------STT---------------------CTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhc---------------------CCC---------------------CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99987752 121 234556666778888999999999998
Q ss_pred HHHC
Q 041786 223 LVED 226 (260)
Q Consensus 223 m~~~ 226 (260)
..+.
T Consensus 115 al~~ 118 (148)
T 2vgx_A 115 AQEL 118 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 81
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.20 E-value=0.016 Score=47.97 Aligned_cols=163 Identities=9% Similarity=0.034 Sum_probs=99.7
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHH--------------HHHHhCCCCC-CH
Q 041786 59 SLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCF--------------VRMIRKGFVP-DK 121 (260)
Q Consensus 59 g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~--------------~~m~~~g~~p-~~ 121 (260)
.+.|+ ...|+.+-..+.+.|++++|+..|++..+.+ |+ ...|+.+-.++ ++..+ +.| +.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~--l~P~~~ 166 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNY 166 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH--HCCCCH
Confidence 33444 5678888889999999999999999998754 32 23333332222 11111 122 23
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE----------- 190 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~----------- 190 (260)
..|+.+-..+.+.|++++|+..|++..+ .. .-+...|..+-..+.+.|+
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~-------------------ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILN-------------------QD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHH-------------------HC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-------------------hC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455555555555555555555555443 22 2256677777777777777
Q ss_pred CCCCc-chHHHHHHHHhhhh-hccHHHH-----HHHHHHHHHCCCCcCCCc------------c--cHHHHHHHHHHH
Q 041786 191 LGLCA-DVNTNKISIPAVSK-EFMIDEA-----FRLLCNLVEDGHKLFPSL------------G--QFDDAFCFFSEM 247 (260)
Q Consensus 191 ~~~~~-~~~t~~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~------------g--~~~~a~~~~~~m 247 (260)
....| +...|+.+-..+.+ .|..++| ...|++.... .|+... | +.++|+..++++
T Consensus 227 l~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 227 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 22233 56778888888888 6665777 4677776653 343322 4 688899888887
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.19 E-value=0.0086 Score=47.34 Aligned_cols=151 Identities=13% Similarity=-0.012 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-KRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
.|......|...|++++|...|++..+. ..+.|-.++ ..+|+.+-..|.+.|++++|+..|
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADY------------------QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHH------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444566788899999999999987652 122232222 468888899999999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhc-CC-----------------CCCCcc-hHHHHHHH
Q 041786 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKS-GE-----------------LGLCAD-VNTNKISI 204 (260)
Q Consensus 145 ~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~-~~-----------------~~~~~~-~~t~~~li 204 (260)
++..+ ++.. .|-.. -..+|+.+-..|... |+ .+..+. ..+++.+-
T Consensus 101 ~~Al~------------l~~~---~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 101 ENAIQ------------IFTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (292)
T ss_dssp HHHHH------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH------------HHHH---cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 86543 2211 11110 123556666666664 66 111111 35678888
Q ss_pred HhhhhhccHHHHHHHHHHHHHCCCCcCCC------c-----------ccHHHHHHHHHHHHh
Q 041786 205 PAVSKEFMIDEAFRLLCNLVEDGHKLFPS------L-----------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~-----------g~~~~a~~~~~~m~~ 249 (260)
..|.+.|++++|...|++..+........ . |++++|...|++...
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999988764332211 1 889999998887663
No 83
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.19 E-value=0.0097 Score=42.26 Aligned_cols=101 Identities=9% Similarity=-0.057 Sum_probs=80.8
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHH
Q 041786 61 SVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMR 138 (260)
Q Consensus 61 ~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 138 (260)
.|+ ...+..+-..+.+.|++++|+..|+..... .| +...|..+-.+|.+.|+++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------------------~P~~~~~~~~lg~~~~~~g~~~ 87 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY------------------------DFYNVDYIMGLAAIYQIKEQFQ 87 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCCCHHHHHHHHHHHHHHccHH
Confidence 443 567778888999999999999999998863 24 5678888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHH
Q 041786 139 EAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFR 218 (260)
Q Consensus 139 ~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~ 218 (260)
+|...|++..+. .|+ +...|..+-.+|.+.|++++|..
T Consensus 88 ~Ai~~~~~al~l---------------------~P~---------------------~~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 88 QAADLYAVAFAL---------------------GKN---------------------DYTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp HHHHHHHHHHHH---------------------SSS---------------------CCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhh---------------------CCC---------------------CcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999988762 222 34456667778888899999999
Q ss_pred HHHHHHHCC
Q 041786 219 LLCNLVEDG 227 (260)
Q Consensus 219 ~~~~m~~~~ 227 (260)
.|+...+..
T Consensus 126 ~~~~al~l~ 134 (151)
T 3gyz_A 126 CFELVIQHS 134 (151)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999988754
No 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.17 E-value=0.0083 Score=52.17 Aligned_cols=87 Identities=8% Similarity=-0.043 Sum_probs=44.0
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCC
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~ 118 (260)
+...+...+|.+.+++..+.. +-+...|..+-..|.+.|++++|.+.|++..+.. .
T Consensus 33 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p 88 (568)
T 2vsy_A 33 ELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-----------------------P 88 (568)
T ss_dssp HHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------C
Confidence 333444445555555543332 1134445555555555555555555555544311 1
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
-+...+..+-..|.+.|++++|.+.|++..+
T Consensus 89 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1345556666666666666666666665543
No 85
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.018 Score=39.59 Aligned_cols=100 Identities=16% Similarity=0.007 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhccCCH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD----KRTHTILVNAWCSSGKM 137 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~ 137 (260)
.+...+..+...+.+.|++++|...|++..+. .|+ ...|..+-..|.+.|++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~a~~~~~~~~~ 81 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL------------------------DATPQDQAVLHRNRAACHLKLEDY 81 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS------------------------CCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------------------------cccchHHHHHHHHHHHHHHHHccH
Confidence 35788889999999999999999999987752 355 56777888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHH
Q 041786 138 REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217 (260)
Q Consensus 138 ~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~ 217 (260)
++|.+.+++..+. .|+ +...|..+-..|...|++++|.
T Consensus 82 ~~A~~~~~~~~~~---------------------~~~---------------------~~~~~~~~a~~~~~~~~~~~A~ 119 (148)
T 2dba_A 82 DKAETEASKAIEK---------------------DGG---------------------DVKALYRRSQALEKLGRLDQAV 119 (148)
T ss_dssp HHHHHHHHHHHHH---------------------TSC---------------------CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhh---------------------Ccc---------------------CHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999877652 121 2344556667788889999999
Q ss_pred HHHHHHHHCC
Q 041786 218 RLLCNLVEDG 227 (260)
Q Consensus 218 ~~~~~m~~~~ 227 (260)
..|++..+..
T Consensus 120 ~~~~~al~~~ 129 (148)
T 2dba_A 120 LDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 9999887653
No 86
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.15 E-value=0.024 Score=39.81 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|.+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-----------------------PSNAIYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567777788889999999999999877532 12456667777777888888888888
Q ss_pred HHHHHh
Q 041786 144 LQELSD 149 (260)
Q Consensus 144 ~~~m~~ 149 (260)
|++..+
T Consensus 70 ~~~a~~ 75 (166)
T 1a17_A 70 ATRAIE 75 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 87
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.14 E-value=0.013 Score=55.95 Aligned_cols=153 Identities=10% Similarity=0.058 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH------HHHHhCCCCCCHhhHHHHHHHHhccCC
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF------VRMIRKGFVPDKRTHTILVNAWCSSGK 136 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~------~~m~~~g~~p~~~~~~~li~~~~~~g~ 136 (260)
|...|.-++..|.+.|++++|.+.|...++.. +++...+.+..++ +.+..---.++...|..+=..|...|+
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 55566667777777777777777776555433 2221122233333 111111123444555555566666666
Q ss_pred HHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC--------CCCCcchHHHH
Q 041786 137 MREAQEFLQELSDKG-------FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--------LGLCADVNTNK 201 (260)
Q Consensus 137 ~~~a~~~~~~m~~~~-------~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--------~~~~~~~~t~~ 201 (260)
+++|..+|....... ...+...|.+.++.- -+..+|..+-.+|...|+ ..+..+...+.
T Consensus 1211 YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLe 1284 (1630)
T 1xi4_A 1211 YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE 1284 (1630)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHH
Confidence 666666666532100 001111222222211 234455544444444443 22333444555
Q ss_pred HHHHhhhhhccHHHHHHHHHHH
Q 041786 202 ISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m 223 (260)
.++..|-+.|.+++|..+++.-
T Consensus 1285 eli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1285 ELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666777777777666443
No 88
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.13 E-value=0.016 Score=48.73 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=71.9
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHHHH--------------
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCFVR-------------- 111 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~-------------- 111 (260)
+|.+.+++..+.. +.+...+..+-..|.+.|++++|...|++..+.. |+ ..++..+-.++..
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7888887765442 2457788999999999999999999999988754 43 4455544433300
Q ss_pred ---------------HHh-CCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 041786 112 ---------------MIR-KGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 112 ---------------m~~-~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 151 (260)
..+ ....| +...+..+-..|.+.|++++|++.|++..+..
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 000 01223 45677888899999999999999999887654
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.13 E-value=0.0087 Score=49.07 Aligned_cols=193 Identities=10% Similarity=-0.013 Sum_probs=107.8
Q ss_pred hhhhcchHHHHHHHHhcccC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC-Cc-----HHHHHHHHH
Q 041786 39 NLTLISELSMWKTIELMKPD----SLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-QC-----VLLYNSLHV 107 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~-----~~~~~~li~ 107 (260)
+...+...+|.+.|+...+. +-.+ ....|..+-..|...|++++|...+++..+.--. ++ ..+++.+-.
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 33445556888888876543 2122 3467888889999999999999999887753110 11 122222222
Q ss_pred HH-------------HH----HHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Q 041786 108 CF-------------VR----MIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQ 169 (260)
Q Consensus 108 ~~-------------~~----m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~ 169 (260)
++ ++ ..+.+-.+ ...++..+-..|...|++++|.+.|++..+ ++. +.
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~------------~~~---~~ 257 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA------------VFE---ES 257 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHH---HT
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------HHH---hh
Confidence 22 11 11111111 113555666666677777777776665443 111 11
Q ss_pred CC-CCChhchHHHHHHHHhcCC-----------------CCCCcchHHHHHHHHhhhhhcc---HHHHHHHHHHHHHCCC
Q 041786 170 GS-VPDLETFNSLIETICKSGE-----------------LGLCADVNTNKISIPAVSKEFM---IDEAFRLLCNLVEDGH 228 (260)
Q Consensus 170 g~-~p~~~~~~~li~~~~~~~~-----------------~~~~~~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~~ 228 (260)
+. .....++..+-..|.+.|+ .+.......+..+-..|...|+ +++|..++++. +.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~ 334 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML 334 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC
Confidence 22 1224456666677777776 1111222335666677777787 66666666554 32
Q ss_pred CcCCCc------------ccHHHHHHHHHHHHh
Q 041786 229 KLFPSL------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 229 ~p~~~~------------g~~~~a~~~~~~m~~ 249 (260)
.|.... |++++|...|++...
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222211 899999999887764
No 90
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.12 E-value=0.037 Score=41.39 Aligned_cols=45 Identities=9% Similarity=-0.062 Sum_probs=30.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN 94 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 94 (260)
+|.+.|....+.| +...+..|-..|...+++++|+..|++..+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g 48 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG 48 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 3455565555543 56667777777777788888888888776543
No 91
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.12 E-value=0.014 Score=40.45 Aligned_cols=98 Identities=13% Similarity=-0.089 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...+..+-..+.+.|++++|...|+...... +.+...|..+-.+|.+.|++++|...
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-----------------------HYDARYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-----------------------CccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4556667788899999999999999887632 12566777888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
|+..... .|+ +...|..+-.+|...|++++|...|+..
T Consensus 75 ~~~al~~---------------------~p~---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 75 YSYGALM---------------------DIN---------------------EPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHH---------------------CTT---------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhc---------------------CCC---------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987752 121 2344556667788889999999999988
Q ss_pred HHC
Q 041786 224 VED 226 (260)
Q Consensus 224 ~~~ 226 (260)
.+.
T Consensus 113 l~~ 115 (142)
T 2xcb_A 113 RAL 115 (142)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 92
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.08 E-value=0.017 Score=42.32 Aligned_cols=85 Identities=9% Similarity=-0.001 Sum_probs=59.8
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhH
Q 041786 46 LSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTH 124 (260)
Q Consensus 46 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~ 124 (260)
.+|.++++.+... .......+..+-..|...|++++|...|++..+. ..+.+..| ....+
T Consensus 9 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~ 69 (203)
T 3gw4_A 9 ALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQ------------------AQKSGDHTAEHRAL 69 (203)
T ss_dssp HHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH------------------HHHcCCcHHHHHHH
Confidence 3566633333221 1235678888999999999999999999987752 22233333 34567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 125 TILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..+-..|...|++++|.+.+++...
T Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 70 HQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788889999999999999986553
No 93
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.07 E-value=0.016 Score=37.87 Aligned_cols=100 Identities=16% Similarity=0.048 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
....|..+...+...|++++|...|+...... +.+...+..+-..+.+.|++++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~a~~~~~~~~~~~A~~ 59 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-----------------------PHNHVLYSNRSAAYAKKGDYQKAYE 59 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----------------------CCcHHHHHHHHHHHHhhccHHHHHH
Confidence 35677888889999999999999999887532 1256677788888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
.+++..+. .|+ +...+..+...+...|++++|...|++
T Consensus 60 ~~~~~~~~---------------------~~~---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 60 DGCKTVDL---------------------KPD---------------------WGKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHH---------------------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHh---------------------Ccc---------------------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99877652 121 234566667778888999999999998
Q ss_pred HHHCC
Q 041786 223 LVEDG 227 (260)
Q Consensus 223 m~~~~ 227 (260)
..+.+
T Consensus 98 ~~~~~ 102 (118)
T 1elw_A 98 GLKHE 102 (118)
T ss_dssp HHTTC
T ss_pred HHHcC
Confidence 87643
No 94
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.078 Score=44.43 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=10.9
Q ss_pred ccHHHHHHHHHHHHhc
Q 041786 235 GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 235 g~~~~a~~~~~~m~~~ 250 (260)
|++++|+..|++....
T Consensus 348 ~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK 363 (472)
T ss_dssp TCHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHhc
Confidence 7777777777766544
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.05 E-value=0.032 Score=42.05 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 141 (260)
+...+-.+...+.+.|++++|+..|+++.+.. .-.| ....+..+-.+|.+.|++++|+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~---------------------p~~~~~~~a~~~lg~~~~~~~~~~~A~ 61 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY---------------------PFGPYSQQVQLDLIYAYYKNADLPLAQ 61 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------------TTSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34455556667788888888888888877521 0011 1235556677778888888888
Q ss_pred HHHHHHHhCCC-CCC-----------------------------------HHHHHHHHHHHHHCCCCCChh-chHHHHHH
Q 041786 142 EFLQELSDKGF-NPP-----------------------------------VRSAKQMVNKMIKQGSVPDLE-TFNSLIET 184 (260)
Q Consensus 142 ~~~~~m~~~~~-~~~-----------------------------------~~~a~~l~~~m~~~g~~p~~~-~~~~li~~ 184 (260)
..|++..+..- .+. ..+|...|+...+.- |+.. .+.+....
T Consensus 62 ~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l 139 (225)
T 2yhc_A 62 AAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH
Confidence 88887665321 121 113333333333221 2211 11110000
Q ss_pred HHhcCCCCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc---------------ccHHHHHHHHHHHH
Q 041786 185 ICKSGELGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL---------------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 185 ~~~~~~~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---------------g~~~~a~~~~~~m~ 248 (260)
.... .. ....-.+-..|.+.|++++|...|+++.+.. |+... |+.++|...++.+.
T Consensus 140 -~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 140 -VFLK-----DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp -HHHH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHH-----HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 0000 00 0011234456888999999999999988753 33221 99999999999888
Q ss_pred hcC
Q 041786 249 IKT 251 (260)
Q Consensus 249 ~~g 251 (260)
..+
T Consensus 212 ~~~ 214 (225)
T 2yhc_A 212 ANS 214 (225)
T ss_dssp HCC
T ss_pred hhC
Confidence 764
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.05 E-value=0.028 Score=40.52 Aligned_cols=142 Identities=11% Similarity=-0.049 Sum_probs=93.1
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHH--H------
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC--F------ 109 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~------ 109 (260)
.+...+...+|...|+...+.. +-+...|..+-..+.+.|++++|+..|+...... |+...+..+... .
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence 3445556668999998876542 1256788899999999999999999999987643 333322221111 0
Q ss_pred ------HHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHH
Q 041786 110 ------VRMIRKGFVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLI 182 (260)
Q Consensus 110 ------~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li 182 (260)
++.. ...|+ ...+..+-..+.+.|++++|...|++..+. .|+.
T Consensus 92 ~a~~~~~~al--~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------------------~p~~------- 141 (176)
T 2r5s_A 92 PELKRLEQEL--AANPDNFELACELAVQYNQVGRDEEALELLWNILKV---------------------NLGA------- 141 (176)
T ss_dssp HHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------------CTTT-------
T ss_pred hHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---------------------Cccc-------
Confidence 1111 12453 677778888888999999999998887753 2221
Q ss_pred HHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 183 ETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 183 ~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
.+...+..+...+...|+.++|...|++..
T Consensus 142 ------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 142 ------------QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp ------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 123345566667777778888887777654
No 97
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.04 E-value=0.03 Score=38.05 Aligned_cols=100 Identities=11% Similarity=-0.126 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 141 (260)
.+...|..+-..+.+.|++++|...|+...... +.+...|..+-..|.+.|++++|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~A~ 63 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----------------------PLVAVYYTNRALCYLKMQQPEQAL 63 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----------------------cCcHHHHHHHHHHHHHhcCHHHHH
Confidence 467888899999999999999999999877632 124677888888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHH
Q 041786 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLC 221 (260)
Q Consensus 142 ~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~ 221 (260)
..|+...+. .|+ +...|..+-..|...|++++|...|+
T Consensus 64 ~~~~~al~~---------------------~p~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 64 ADCRRALEL---------------------DGQ---------------------SVKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHHHHHH---------------------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHh---------------------Cch---------------------hHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999877652 121 34456667778888899999999998
Q ss_pred HHHHC
Q 041786 222 NLVED 226 (260)
Q Consensus 222 ~m~~~ 226 (260)
+..+.
T Consensus 102 ~a~~~ 106 (137)
T 3q49_B 102 RAYSL 106 (137)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.04 E-value=0.043 Score=42.20 Aligned_cols=92 Identities=8% Similarity=-0.056 Sum_probs=63.6
Q ss_pred hhhhcchHHHHHHHHhcccCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCC
Q 041786 39 NLTLISELSMWKTIELMKPDSLS-VF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g 116 (260)
+...+...+|.+.|+...+.... |. ...+..+-..|.+.|++++|+..|+...+.. |+
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~------------------ 84 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QI------------------ 84 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------------
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CC------------------
Confidence 44455666899999988765311 11 5678888889999999999999999888642 10
Q ss_pred CCCCHhhHHHHHHHHhc--------cCCHHHHHHHHHHHHhC
Q 041786 117 FVPDKRTHTILVNAWCS--------SGKMREAQEFLQELSDK 150 (260)
Q Consensus 117 ~~p~~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~ 150 (260)
-......+..+-.++.+ .|++++|...|++..+.
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 00112334445555556 89999999999988764
No 99
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.03 E-value=0.069 Score=43.31 Aligned_cols=177 Identities=10% Similarity=-0.058 Sum_probs=101.6
Q ss_pred hhhcchHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC
Q 041786 40 LTLISELSMWKTIELMKPDSLSVFP----QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~ 115 (260)
...+....|.+.++......-..+. ..++.+-..+...|++++|...+++.... ..+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~~~~ 86 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM------------------ARQH 86 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------HHHT
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH------------------HHhc
Confidence 3445555788887775443212222 24566677888899999999999987752 1122
Q ss_pred CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC--CC-hhchHHHHHHHHhcCC-
Q 041786 116 GFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV--PD-LETFNSLIETICKSGE- 190 (260)
Q Consensus 116 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~--p~-~~~~~~li~~~~~~~~- 190 (260)
|... ....+..+-..+...|++++|.+.+++.... .. +.+.. |. ...+..+-..+...|+
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~------------~~---~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL------------IN---EQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HH---HTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------HH---HhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 2111 1234566777888999999999999876542 11 11111 11 2233444455555555
Q ss_pred --------------C--CCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCC-----------------cccH
Q 041786 191 --------------L--GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPS-----------------LGQF 237 (260)
Q Consensus 191 --------------~--~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------------~g~~ 237 (260)
. +.......|..+-..+...|++++|...+++.....-.+... .|+.
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 1 111123456666677777788888888777765431111110 0777
Q ss_pred HHHHHHHHHHHh
Q 041786 238 DDAFCFFSEMQI 249 (260)
Q Consensus 238 ~~a~~~~~~m~~ 249 (260)
++|...+++...
T Consensus 232 ~~A~~~~~~a~~ 243 (373)
T 1hz4_A 232 AAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhCCC
Confidence 777777766553
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.02 E-value=0.03 Score=38.14 Aligned_cols=98 Identities=9% Similarity=-0.070 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|.-.=..|.+.|++++|++.|++..+.. +.+...|..+-.+|.+.|++++|++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----------------------p~~~~~~~~~~~~~~~~~~~~~A~~~ 69 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----------------------PENAILYSNRAACLTKLMEFQRALDD 69 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CCCHHHHHHHhhHHHhhccHHHHHHH
Confidence 3566667788999999999999999887632 13567888888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
|++..+. .|+ +...|..+-.+|...|++++|...|++.
T Consensus 70 ~~~al~~---------------------~p~---------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 70 CDTCIRL---------------------DSK---------------------FIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHH---------------------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh---------------------hhh---------------------hhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9977652 121 3445666777888889999999999988
Q ss_pred HHC
Q 041786 224 VED 226 (260)
Q Consensus 224 ~~~ 226 (260)
.+.
T Consensus 108 l~l 110 (126)
T 4gco_A 108 LQV 110 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 101
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.01 E-value=0.028 Score=53.75 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=93.9
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-----
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----- 109 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----- 109 (260)
+-..+...+...+|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+-.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 4455555666667777777642 12222333332 5566777777777542 245555554433
Q ss_pred -HHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHH-----HHHHHHHCCCCCChhchHH
Q 041786 110 -VRMIRK-GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPP--VRSAKQ-----MVNKMIKQGSVPDLETFNS 180 (260)
Q Consensus 110 -~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~a~~-----l~~~m~~~g~~p~~~~~~~ 180 (260)
++-.+. --.-|...|..++.+|.+.|++++|.+.+...++..-.+. ...+.. -++.+...--.|+...|..
T Consensus 1121 ~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1121 VKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ 1200 (1630)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHH
Confidence 111110 1124677788899999999999999999986555432211 111110 0111111112344455555
Q ss_pred HHHHHHhcCC----CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 181 LIETICKSGE----LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 181 li~~~~~~~~----~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
+-..|-..|+ ...--....|..+...|.+.|++++|.+.+++.
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 5555555555 111111346777777777777777777777654
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.99 E-value=0.013 Score=41.60 Aligned_cols=90 Identities=6% Similarity=-0.152 Sum_probs=72.9
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCC
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g 116 (260)
..+...+...+|.+.|+...+.. +-+...|..+-.+|.+.|++++|+..|++..+.
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----------------------- 99 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----------------------- 99 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----------------------
Confidence 33455666669999999987653 236788999999999999999999999998863
Q ss_pred CCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 041786 117 FVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 117 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 151 (260)
.| +...|..+-.+|.+.|++++|...|++..+..
T Consensus 100 -~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 -GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 24 45678888899999999999999999887643
No 103
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.99 E-value=0.017 Score=38.67 Aligned_cols=105 Identities=11% Similarity=0.108 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+...+.+.|++++|...|++..+.. +.+...+..+-..|.+.|++++|...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~~~~~~~la~~~~~~~~~~~A~~~ 60 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-----------------------PTNMTYITNQAAVYFEKGDYNKCREL 60 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------CccHHHHHHHHHHHHHhccHHHHHHH
Confidence 4567888889999999999999999887532 23566778888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC-hhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
+++..... |+ ...+.. ....|..+-..|.+.|++++|...|++
T Consensus 61 ~~~~~~~~---------------------~~~~~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 61 CEKAIEVG---------------------RENREDYRQ---------------IAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHH---------------------HHSTTCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhc---------------------cccchhHHH---------------HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99776521 10 000000 134566777888899999999999999
Q ss_pred HHHCC
Q 041786 223 LVEDG 227 (260)
Q Consensus 223 m~~~~ 227 (260)
..+..
T Consensus 105 ~~~~~ 109 (131)
T 1elr_A 105 SLAEH 109 (131)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 88754
No 104
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.97 E-value=0.044 Score=42.14 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhccCCHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD----KRTHTILVNAWCSSGKMR 138 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~ 138 (260)
+...+-.+-..+.+.|++++|+..|+++.+.. |+ ...+..+-..|.+.|+++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------------p~~~~~~~a~~~lg~~~~~~~~~~ 69 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG------------------------RTHEWAADAQFYLARAYYQNKEYL 69 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC------------------------SCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------------------------CCCcchHHHHHHHHHHHHHhCcHH
Confidence 56677778888999999999999999988632 32 456677788899999999
Q ss_pred HHHHHHHHHHhC
Q 041786 139 EAQEFLQELSDK 150 (260)
Q Consensus 139 ~a~~~~~~m~~~ 150 (260)
+|...|++..+.
T Consensus 70 ~A~~~~~~~l~~ 81 (261)
T 3qky_A 70 LAASEYERFIQI 81 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 105
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.96 E-value=0.034 Score=37.00 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=65.8
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+....|.+.++...+.. +.+...|..+...+...|++++|...++...+..
T Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------- 76 (131)
T 2vyi_A 21 EQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID----------------------- 76 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----------------------
Confidence 3444455557888887765442 2357788888888999999999999998877531
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..+...+..+-..|.+.|++++|...|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 12466778888899999999999999998765
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.94 E-value=0.024 Score=44.71 Aligned_cols=148 Identities=13% Similarity=-0.075 Sum_probs=97.7
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHH-H--
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC-F-- 109 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~-- 109 (260)
..+-..+...+...+|.+.|+...+.. +-+...+..+...+.+.|++++|...|+...... |+.......... +
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHh
Confidence 334444556677779999999876543 1257788999999999999999999999987653 444322222211 1
Q ss_pred --------HHHHh-CCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchH
Q 041786 110 --------VRMIR-KGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN 179 (260)
Q Consensus 110 --------~~m~~-~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~ 179 (260)
....+ ....| +...+..+-..+...|++++|.+.|.+..+. .|+.
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---------------------~p~~---- 252 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---------------------DLTA---- 252 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTG----
T ss_pred hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---------------------cccc----
Confidence 11111 11234 4677788888899999999999999987763 2221
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 180 SLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
.+...+..+...|...|+.++|...|++-
T Consensus 253 ---------------~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 253 ---------------ADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp ---------------GGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------ccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 12445666666677777777777776654
No 107
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.0076 Score=49.31 Aligned_cols=204 Identities=12% Similarity=-0.005 Sum_probs=118.4
Q ss_pred chhHHHHHhhhhhcchHHHHHHHHhcc----cCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcC----CCCc-H
Q 041786 30 YAERTLNRLNLTLISELSMWKTIELMK----PDSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN----CQQC-V 99 (260)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~a~~~~~~m~----~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~-~ 99 (260)
.....+-..+...+...+|.+.++... ..+-.| ....|..+-..|...|++++|...|++..+.. -.+. .
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 466666666666677666666665531 223222 38888888888888888888888887766431 1111 1
Q ss_pred HHHHHHHHHH----H---------------------------------HHHhCCCCC-CHhhHHHHHHHHhccCCHHHHH
Q 041786 100 LLYNSLHVCF----V---------------------------------RMIRKGFVP-DKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 100 ~~~~~li~~~----~---------------------------------~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 141 (260)
.++..+-.++ + .....+-.| ....+..+-..|...|++++|.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 2333332221 0 011112122 2346777888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC-CChhchHHHHHHHHhcCC-----------------CCCCc-chHHHHH
Q 041786 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-PDLETFNSLIETICKSGE-----------------LGLCA-DVNTNKI 202 (260)
Q Consensus 142 ~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~-p~~~~~~~li~~~~~~~~-----------------~~~~~-~~~t~~~ 202 (260)
+.|++..+. ... .+.. ....+|..+-..|...|+ .+..+ ...++..
T Consensus 208 ~~~~~al~~------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 272 (406)
T 3sf4_A 208 IAHEQRLLI------------AKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272 (406)
T ss_dssp HHHHHHHHH------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH------------HHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHH
Confidence 998876532 111 1100 012255556666666665 11111 1456777
Q ss_pred HHHhhhhhccHHHHHHHHHHHHHCCCC----cCCCc------------ccHHHHHHHHHHHH
Q 041786 203 SIPAVSKEFMIDEAFRLLCNLVEDGHK----LFPSL------------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~------------g~~~~a~~~~~~m~ 248 (260)
+-..|...|++++|...|++..+.... +.... |++++|...+++..
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 778888888998888888877643211 11011 88888888887654
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.92 E-value=0.073 Score=40.01 Aligned_cols=182 Identities=10% Similarity=-0.044 Sum_probs=100.8
Q ss_pred hhhhcchHHHHHHHHhcccCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcH--HHHHHHHHHHHHHHh
Q 041786 39 NLTLISELSMWKTIELMKPDSL-SVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV--LLYNSLHVCFVRMIR 114 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~m~~ 114 (260)
+...+...+|.+.|+.+.+... .|. ...+..+..+|.+.|++++|+..|++..+..-.... ..+..+-.++..+-.
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD 93 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh
Confidence 3445556689999998865421 222 467888889999999999999999999875421111 122222222222111
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC---
Q 041786 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGF-NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE--- 190 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~--- 190 (260)
. ....|..+-..+...|+.++|...|++..+..- .+....+......+... .......+-..|.+.|+
T Consensus 94 ~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~----~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 94 S----ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCHHH
T ss_pred h----hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCcHHH
Confidence 0 011122233344557899999999999886531 22222222222211110 00011233444555555
Q ss_pred --------CCCCcc----hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCC
Q 041786 191 --------LGLCAD----VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228 (260)
Q Consensus 191 --------~~~~~~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (260)
....|+ ...+..+..+|.+.|+.++|...++.+...+.
T Consensus 166 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 166 VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112232 35677888999999999999999999887653
No 109
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.033 Score=37.48 Aligned_cols=98 Identities=16% Similarity=0.006 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+-..+.+.|++++|+..|++..+.. +.+...|..+-.+|.+.|++++|+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~~a~~~~~~~~~~~A~~~ 60 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----------------------PEDARGYSNRAAALAKLMSFPEAIAD 60 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------CCChHHHHHHHHHHHHhcCHHHHHHH
Confidence 4567777888999999999999999887632 12567888888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
|++..+. .|+ +...|..+-..|...|++++|...|++.
T Consensus 61 ~~~al~~---------------------~p~---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 61 CNKAIEK---------------------DPN---------------------FVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHH---------------------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh---------------------CCC---------------------cHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9987752 122 2445666667788888999999999888
Q ss_pred HHC
Q 041786 224 VED 226 (260)
Q Consensus 224 ~~~ 226 (260)
.+.
T Consensus 99 l~~ 101 (126)
T 3upv_A 99 RTK 101 (126)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 110
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.91 E-value=0.026 Score=36.53 Aligned_cols=94 Identities=12% Similarity=-0.083 Sum_probs=71.5
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
+-..+...+...+|.+.|+...+.. ..+...|..+-..+.+.|++++|...|++..+.. |
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~----------------- 71 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--E----------------- 71 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--C-----------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--c-----------------
Confidence 3334445556668888888875543 2357788899999999999999999999887632 0
Q ss_pred CCCCCCHhhHHHHHHHHhcc-CCHHHHHHHHHHHHhC
Q 041786 115 KGFVPDKRTHTILVNAWCSS-GKMREAQEFLQELSDK 150 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 150 (260)
-..+...+..+-..|.+. |++++|.+.+......
T Consensus 72 --~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 72 --DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp --CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred --ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 011467888889999999 9999999999988764
No 111
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.90 E-value=0.032 Score=37.44 Aligned_cols=87 Identities=11% Similarity=-0.062 Sum_probs=68.7
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCC
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~ 118 (260)
+...+....|.+.|+...+.. +.+...|..+...|.+.|++++|+..|++..+.. .
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----------------------~ 81 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-----------------------P 81 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------------C
Confidence 344455558888888876543 2367889999999999999999999999887632 1
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.+...+..+-..|.+.|++++|.+.|++..+
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2467788888899999999999999998765
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.88 E-value=0.035 Score=36.94 Aligned_cols=99 Identities=16% Similarity=-0.026 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+...|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~~~~~~~~~a~~~~~~~~~~~A~~ 67 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-----------------------PANAVYFCNRAAAYSKLGNYAGAVQ 67 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----------------------CCCHHHHHHHHHHHHHhhchHHHHH
Confidence 45678888899999999999999999877531 1256778888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
.++...+. .|+ +...+..+-..|.+.|++++|...|++
T Consensus 68 ~~~~~~~~---------------------~~~---------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 68 DCERAICI---------------------DPA---------------------YSKAYGRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHH---------------------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhc---------------------Ccc---------------------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99877652 121 234455666778888899999999988
Q ss_pred HHHC
Q 041786 223 LVED 226 (260)
Q Consensus 223 m~~~ 226 (260)
..+.
T Consensus 106 ~~~~ 109 (131)
T 2vyi_A 106 ALEL 109 (131)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 113
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.84 E-value=0.016 Score=39.59 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
..+.-|=..+.+.|++++|+..|++..+. .| +...|+.+-.+|.+.|++++|++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~------------------------~p~~~~~~~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL------------------------DPSNITFYNNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCCCHHHHHhHHHHHHHhhhHHHHHHH
Confidence 45566667889999999999999988763 23 467788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
|++..+. .| +...+..+..+ |..+-..+...|++++|...|++
T Consensus 65 ~~~al~~---------------------~~~~~~~~~~~a~~---------------~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 65 CEKAVEV---------------------GRETRADYKLIAKA---------------MSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHH---------------------HHHTTCCHHHHHHH---------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHh---------------------CcccchhhHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9876642 11 12233333334 44444678889999999999988
Q ss_pred HHHC
Q 041786 223 LVED 226 (260)
Q Consensus 223 m~~~ 226 (260)
....
T Consensus 109 al~~ 112 (127)
T 4gcn_A 109 SLSE 112 (127)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7764
No 114
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.81 E-value=0.017 Score=45.56 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
..+..+...|.+.|++++|...+++..
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 366777778888888888888887654
No 115
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.74 E-value=0.025 Score=48.69 Aligned_cols=147 Identities=9% Similarity=-0.060 Sum_probs=85.9
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHHHH
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVF--PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCFVR 111 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~ 111 (260)
+..+....+....|.++|+...+. .|+ ...|..+...+.+.|++++|+.+|+...+.. |+ ...|-
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~-------- 394 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYV-------- 394 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHH--------
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHH--------
Confidence 333444456666899999998764 444 3589999999999999999999999887632 11 11111
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE- 190 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~- 190 (260)
..+++. +...|+.++|..+|+...+.. +-+...|..++..+.+.|+
T Consensus 395 ------------~~a~~~-~~~~~~~~~A~~~~e~al~~~--------------------p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 395 ------------TAALME-YYCSKDKSVAFKIFELGLKKY--------------------GDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp ------------HHHHHH-HHHTCCHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHTTTTCH
T ss_pred ------------HHHHHH-HHHcCChhHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHhCCCH
Confidence 111111 123455555555555443310 0123333333333333333
Q ss_pred -------------CCCCc--chHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 191 -------------LGLCA--DVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 191 -------------~~~~~--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
....| ....|...+......|+.+.+..++.++.+.
T Consensus 442 ~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01122 2346777777777889999999998887754
No 116
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.71 E-value=0.019 Score=49.21 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHH----------HHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC----CHhhH
Q 041786 59 SLSVFPQTLSLIIE----------EFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP----DKRTH 124 (260)
Q Consensus 59 g~~~~~~~~~~li~----------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p----~~~~~ 124 (260)
+.+|+..++..++. .+...|++++|+.++++..+. .+.-+-| ...++
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~-------------------~~~~lg~~Hp~~a~~~ 354 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEK-------------------QEPVFADTNLYVLRLL 354 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------------------HTTTBCTTSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------------------HHHhcCCCCHHHHHHH
Confidence 44566666554433 355789999999999887752 2222223 34688
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 041786 125 TILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
+.|...|...|++++|+.++++..
T Consensus 355 ~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 355 SIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999998654
No 117
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.71 E-value=0.046 Score=36.67 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHhccCCHHHHHHH
Q 041786 68 SLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK----RTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 68 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~ 143 (260)
-.+-..+.+.|++++|...|+...+.. |+. ..+..+-..|.+.|++++|...
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 61 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY------------------------PNGVYTPNALYWLGESYYATRNFQLAEAQ 61 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------SSSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC------------------------CCCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 345567888999999999999887632 332 3666777888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
|++..+. .|+... ....+..+-..|...|+.++|...|++.
T Consensus 62 ~~~~~~~---------------------~p~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 62 FRDLVSR---------------------YPTHDK------------------AAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHH---------------------CTTSTT------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH---------------------CCCCcc------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987752 122110 1233455566788889999999999998
Q ss_pred HHCC
Q 041786 224 VEDG 227 (260)
Q Consensus 224 ~~~~ 227 (260)
.+..
T Consensus 103 ~~~~ 106 (129)
T 2xev_A 103 ATQY 106 (129)
T ss_dssp HHHS
T ss_pred HHHC
Confidence 8753
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.70 E-value=0.028 Score=45.43 Aligned_cols=132 Identities=10% Similarity=-0.020 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 141 (260)
+...|..+-..|.+.|++++|+..|++..+..-......... .....| ....|..+-.+|.+.|++++|+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~---------~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 216 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE---------AQKAQALRLASHLNLAMCHLKLQAFSAAI 216 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH---------HHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHH---------HHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356788888899999999999999998876321000000000 000000 1478888899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC-----------CCCCc-chHHHHHHHHhhhh
Q 041786 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE-----------LGLCA-DVNTNKISIPAVSK 209 (260)
Q Consensus 142 ~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~-----------~~~~~-~~~t~~~li~~~~~ 209 (260)
..|++..+.. +.+...|..+-.+|...|+ ....| +...+..+-..+.+
T Consensus 217 ~~~~~al~~~--------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 217 ESCNKALELD--------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999877531 1234455555555555555 11222 23455555555666
Q ss_pred hccHHHH-HHHHHHH
Q 041786 210 EFMIDEA-FRLLCNL 223 (260)
Q Consensus 210 ~g~~~~a-~~~~~~m 223 (260)
.|+.++| ...|..|
T Consensus 277 ~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 277 IRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 6666655 3344444
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.65 E-value=0.051 Score=36.90 Aligned_cols=90 Identities=7% Similarity=-0.076 Sum_probs=72.5
Q ss_pred HHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC
Q 041786 36 NRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115 (260)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~ 115 (260)
-..+...+...+|.+.|++..+.. +.+...|..+-.+|.+.|++++|+..|++..+..
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------------- 77 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--------------------- 77 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---------------------
Confidence 344556667779999998876543 2367889999999999999999999999887632
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+.+...|..+-.+|...|++++|.+.|++..+
T Consensus 78 --p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 78 --SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12466788888999999999999999998776
No 120
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.64 E-value=0.14 Score=41.64 Aligned_cols=190 Identities=8% Similarity=-0.021 Sum_probs=99.7
Q ss_pred hhcchHHHHHHHHhcccCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-----CC-cHHHHHHHHHHH
Q 041786 41 TLISELSMWKTIELMKPDSL-SV----FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNC-----QQ-CVLLYNSLHVCF 109 (260)
Q Consensus 41 ~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~-~~~~~~~li~~~ 109 (260)
..+...+|.+.|++..+.-. .+ ....|..+-..|...|+++.|...+++..+... .+ ...+++.+-.++
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 34455588888877644311 12 256788888999999999999999988765311 11 112222222222
Q ss_pred -------------HH----HHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 110 -------------VR----MIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 110 -------------~~----m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
.+ ..+.+-.+ ...+++.+-..|...|++++|.+.|++... ++... +.
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~------------~~~~~---~~ 257 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK------------VSREK---VP 257 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------HHHHH---CG
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------HHHhh---CC
Confidence 11 11111111 123455555566666666666666664432 11111 11
Q ss_pred CCChhchHHHHHHHHhcCC-----------------CCCCcchHHHHHHHHhhhhhcc---HHHHHHHHHHHHHCCCCcC
Q 041786 172 VPDLETFNSLIETICKSGE-----------------LGLCADVNTNKISIPAVSKEFM---IDEAFRLLCNLVEDGHKLF 231 (260)
Q Consensus 172 ~p~~~~~~~li~~~~~~~~-----------------~~~~~~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~ 231 (260)
+....++..+-..|.+.|+ .+.......++.+-..|...|+ +++|...+++ .+..|+
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~ 334 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAY 334 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhH
Confidence 1224455566666666666 1122223345555555666666 5556555554 222222
Q ss_pred CCc------------ccHHHHHHHHHHHH
Q 041786 232 PSL------------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 232 ~~~------------g~~~~a~~~~~~m~ 248 (260)
... |+.++|...|++..
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111 88888888877664
No 121
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.64 E-value=0.022 Score=38.03 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=69.5
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+....|.+.|+...+.. +.+...|..+...|.+.|++++|...|++..+.. .. .
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------~~--~ 71 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG------------------RE--N 71 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------------HH--S
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc------------------cc--c
Confidence 3444556668888888875543 3367888899999999999999999999887531 00 1
Q ss_pred CCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 118 VPD----KRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 118 ~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
.++ ...|..+-..|.+.|++++|.+.|+...+.
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 122 567788888999999999999999988764
No 122
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.62 E-value=0.13 Score=41.59 Aligned_cols=174 Identities=11% Similarity=-0.061 Sum_probs=103.9
Q ss_pred hhhhcchHHHHHHHHhccc----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHH
Q 041786 39 NLTLISELSMWKTIELMKP----DSLS--V-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 111 (260)
+...+...+|.+.+++..+ .+.. | ....+..+-..+...|++++|...+++.....
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------- 165 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL----------------- 165 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----------------
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----------------
Confidence 4444555577777766532 2322 2 24566777888999999999999999877532
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchH-----HHHHHHH
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFN-----SLIETIC 186 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~-----~li~~~~ 186 (260)
.+.|.......+..+-..+...|++++|.+.+++...... ..+. | ..+. .....+.
T Consensus 166 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~---------------~~~~-~--~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 166 -SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG---------------NGKY-H--SDWISNANKVRVIYWQ 226 (373)
T ss_dssp -TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---------------TSCC-C--HHHHHHHHHHHHHHHH
T ss_pred -hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh---------------ccCc-c--hhHHHHHHHHHHHHHH
Confidence 1112212235677788889999999999999987654210 0111 0 1111 1222244
Q ss_pred hcCC-----------CCCCc-----chHHHHHHHHhhhhhccHHHHHHHHHHHHHC----CCCcCCC-c-----------
Q 041786 187 KSGE-----------LGLCA-----DVNTNKISIPAVSKEFMIDEAFRLLCNLVED----GHKLFPS-L----------- 234 (260)
Q Consensus 187 ~~~~-----------~~~~~-----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~-~----------- 234 (260)
..|+ ....+ ....+..+...+...|+.++|...+++.... |..+... .
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 5555 11111 1224566777888889999999888877543 2111111 1
Q ss_pred ccHHHHHHHHHHHH
Q 041786 235 GQFDDAFCFFSEMQ 248 (260)
Q Consensus 235 g~~~~a~~~~~~m~ 248 (260)
|+.++|...+++..
T Consensus 307 g~~~~A~~~l~~al 320 (373)
T 1hz4_A 307 GRKSDAQRVLLDAL 320 (373)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888877654
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.56 E-value=0.02 Score=40.20 Aligned_cols=90 Identities=10% Similarity=-0.069 Sum_probs=71.6
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
+-..+...+...+|.+.|+...... +.+...|..+-.+|.+.|++++|+..|+.....
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------- 84 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--------------------- 84 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---------------------
Confidence 3444556667779999998876543 236788888999999999999999999988763
Q ss_pred CCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 115 KGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 115 ~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.| +...|..+-.+|...|++++|.+.|+...+
T Consensus 85 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 ---DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp ---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23 456777788899999999999999998765
No 124
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.56 E-value=0.019 Score=40.42 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=61.6
Q ss_pred HHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHH
Q 041786 34 TLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMI 113 (260)
Q Consensus 34 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~ 113 (260)
.+-.++...+....|.+.|+...+.. +-+...|..+-..|.+.|++++|+..|+...+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-------------------- 94 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-------------------- 94 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------------------
Confidence 34455666666668888887765542 125677778888888888888888888877652
Q ss_pred hCCCCC-CHhhHHHHHHHHhccCCHHHHHHH-HHHHHh
Q 041786 114 RKGFVP-DKRTHTILVNAWCSSGKMREAQEF-LQELSD 149 (260)
Q Consensus 114 ~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~ 149 (260)
.| +...|..+-..|.+.|+.++|.+. +++..+
T Consensus 95 ----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 95 ----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp ----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 24 356777777788888888765554 455544
No 125
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.56 E-value=0.29 Score=41.42 Aligned_cols=196 Identities=10% Similarity=0.022 Sum_probs=113.2
Q ss_pred hcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------
Q 041786 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGK----HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------- 109 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------- 109 (260)
......|.+.|+...+.| +...+..|-..|.. .++.++|...|++..+.| +...+..|-.++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 345558888888876664 56778888888888 889999999999988765 333333333222
Q ss_pred ---------HHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCC-----------------CCCCHHHH
Q 041786 110 ---------VRMIRKGFVPDKRTHTILVNAWCS----SGKMREAQEFLQELSDKG-----------------FNPPVRSA 159 (260)
Q Consensus 110 ---------~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~-----------------~~~~~~~a 159 (260)
++..+.| +...+..|-..|.. .++.++|.+.|++..+.| +..+..+|
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 2222222 34445555555655 667888888887665442 34555567
Q ss_pred HHHHHHHHHCCCCCChhchHHHHHHHHh----cCC-----------CCCCcchHHHHHHHHhhhh----hccHHHHHHHH
Q 041786 160 KQMVNKMIKQGSVPDLETFNSLIETICK----SGE-----------LGLCADVNTNKISIPAVSK----EFMIDEAFRLL 220 (260)
Q Consensus 160 ~~l~~~m~~~g~~p~~~~~~~li~~~~~----~~~-----------~~~~~~~~t~~~li~~~~~----~g~~~~a~~~~ 220 (260)
...|....+.| +...+..+-..|.. .++ .. ..+...+..+-..|.. .++.++|...|
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QGNSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 77777666654 34445555544443 222 00 0122333333334444 67777777777
Q ss_pred HHHHHCCCCcCCCc--------------ccHHHHHHHHHHHHhcC
Q 041786 221 CNLVEDGHKLFPSL--------------GQFDDAFCFFSEMQIKT 251 (260)
Q Consensus 221 ~~m~~~~~~p~~~~--------------g~~~~a~~~~~~m~~~g 251 (260)
+...+.|.. +... ++.++|+..|++..+.|
T Consensus 283 ~~a~~~~~~-~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 283 RKSAEQGNS-DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHTTTCH-HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCH-HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 776655421 1111 36667777776665544
No 126
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.53 E-value=0.057 Score=48.22 Aligned_cols=142 Identities=15% Similarity=0.005 Sum_probs=91.3
Q ss_pred hhhcchHHHHHHHHhcc--------cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHH
Q 041786 40 LTLISELSMWKTIELMK--------PDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 111 (260)
...+...+|.+.++... +. -..+...|..+-..|.+.|++++|+..|++..+.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV----------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------
Confidence 44555568888888875 22 12356788888899999999999999999887632
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGEL 191 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 191 (260)
.-+...|..+-.+|.+.|++++|++.|++..+.. |+ +...|..+-..|.+.|+.
T Consensus 464 ------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~------------------~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 464 ------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PG------------------ELAPKLALAATAELAGNT 517 (681)
T ss_dssp ------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT------------------CSHHHHHHHHHHHHHTCC
T ss_pred ------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC------------------ChHHHHHHHHHHHHcCCh
Confidence 1245677777778888888888888888776532 11 223333333333333331
Q ss_pred C----------CCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 192 G----------LCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 192 ~----------~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
. ..| +...|..+-..|.+.|+.++|...|++..+
T Consensus 518 ~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 518 DEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp CTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 0 122 345566666677777777777777766543
No 127
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.53 E-value=0.023 Score=39.42 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF-VPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
..++..+-..|...|++++|...+++..+.. .+.+- ..-...+..+-..|...|++++|.+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 70 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------------------KEFGDKAAERIAYSNLGNAYIFLGEFETASE 70 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH------------------HHhCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567888889999999999999999877521 11111 1112467778888999999999999
Q ss_pred HHHHHHh
Q 041786 143 FLQELSD 149 (260)
Q Consensus 143 ~~~~m~~ 149 (260)
.+++..+
T Consensus 71 ~~~~a~~ 77 (164)
T 3ro3_A 71 YYKKTLL 77 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.50 E-value=0.15 Score=37.49 Aligned_cols=85 Identities=8% Similarity=-0.117 Sum_probs=68.8
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCC
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~ 118 (260)
+...+...+|.+.|+... .|+...|..+-..|.+.|++++|+..|++..+.. +
T Consensus 16 ~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------~ 68 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-----------------------K 68 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred HHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------c
Confidence 334455568888888764 5688899999999999999999999999877532 1
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
.+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 35677888889999999999999999988763
No 129
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.48 E-value=0.087 Score=35.20 Aligned_cols=87 Identities=16% Similarity=-0.022 Sum_probs=65.4
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFP---QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~ 115 (260)
+...+...+|.+.|+...+.... +. ..+..+-..|.+.|++++|...|+...+..
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--------------------- 69 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--------------------- 69 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---------------------
Confidence 33445556888888887654211 22 577788889999999999999999887632
Q ss_pred CCCCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 116 GFVPD----KRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 116 g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
|+ ...+..+-.++.+.|++++|...|+...+.
T Consensus 70 ---p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 70 ---PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp ---TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 445667778889999999999999988764
No 130
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.47 E-value=0.055 Score=36.40 Aligned_cols=95 Identities=14% Similarity=-0.023 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
.+..+-..+.+.|++++|+..|+...+. .| +...|..+-.++.+.|++++|+..|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 74 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK------------------------EPEREEAWRSLGLTQAENEKDGLAIIAL 74 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455667888999999999999988763 24 5667777888889999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 145 ~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
++..+. .|+ +...+..+-..|...|++++|...|++..
T Consensus 75 ~~al~l---------------------~P~---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 75 NHARML---------------------DPK---------------------DIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHH---------------------CTT---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---------------------CCC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 987752 222 23455666677888899999999998877
Q ss_pred HC
Q 041786 225 ED 226 (260)
Q Consensus 225 ~~ 226 (260)
+.
T Consensus 113 ~~ 114 (121)
T 1hxi_A 113 LS 114 (121)
T ss_dssp C-
T ss_pred Hh
Confidence 53
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.46 E-value=0.14 Score=36.55 Aligned_cols=115 Identities=5% Similarity=0.059 Sum_probs=83.8
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTI 126 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~ 126 (260)
.|.+.++...+.. +.+...|..+-..|...|++++|...|++..+.. ..+...+..
T Consensus 28 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~ 83 (177)
T 2e2e_A 28 AQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----------------------GENAELYAA 83 (177)
T ss_dssp CCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------CSCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------CCCHHHHHH
Confidence 5555665544332 2367889999999999999999999999887531 124556666
Q ss_pred HHHH-HhccCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHH
Q 041786 127 LVNA-WCSSGKM--REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKIS 203 (260)
Q Consensus 127 li~~-~~~~g~~--~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~l 203 (260)
+-.. |.+.|++ ++|...|++..+. .|+ +...+..+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~---------------------~p~---------------------~~~~~~~l 121 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL---------------------DSN---------------------EITALMLL 121 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH---------------------CTT---------------------CHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh---------------------CCC---------------------cHHHHHHH
Confidence 6677 7788998 9999999887752 122 23445566
Q ss_pred HHhhhhhccHHHHHHHHHHHHHCC
Q 041786 204 IPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
-..|...|++++|...|++..+..
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhhC
Confidence 677888899999999999988764
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.42 E-value=0.035 Score=38.96 Aligned_cols=106 Identities=8% Similarity=-0.024 Sum_probs=76.4
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC----------
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE---------- 190 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~---------- 190 (260)
...|..+-..+...|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 72 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--------------------PSNAIYYGNRSLAYLRTECYGYALGDATR 72 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456677788889999999999999876531 1245566666667777776
Q ss_pred -CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc--------------ccHHHHHHHHHHHH
Q 041786 191 -LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL--------------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 191 -~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------------g~~~~a~~~~~~m~ 248 (260)
....| +...|..+-..+...|++++|...|++..+.. |.... |++++|+..++...
T Consensus 73 a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 11223 46678888888999999999999999988653 22211 88888888887654
No 133
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.11 Score=35.44 Aligned_cols=89 Identities=11% Similarity=-0.175 Sum_probs=69.9
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHH
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVF----PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRM 112 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m 112 (260)
..+...+....|.+.|+...+. .|+ ...|..+-..|.+.|++++|+..|++..+..
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------ 95 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------------------ 95 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------------------
T ss_pred HHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------------------
Confidence 3344555666899999887665 355 6788888999999999999999999877531
Q ss_pred HhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 113 IRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 113 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
..+...|..+-..|.+.|++++|...|++..+.
T Consensus 96 -----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 96 -----GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 124667778888999999999999999987763
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.39 E-value=0.061 Score=37.15 Aligned_cols=88 Identities=8% Similarity=-0.053 Sum_probs=69.4
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+...+|.+.|+...... +.+...|..+-..|.+.|++++|+..|+......
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------- 82 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD----------------------- 82 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------------------
Confidence 3445566669999998876543 2367888889999999999999999999887632
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+-+...|..+-.+|...|++++|...|+...+
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12456677788899999999999999998765
No 135
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.30 E-value=0.071 Score=41.95 Aligned_cols=156 Identities=10% Similarity=-0.076 Sum_probs=100.0
Q ss_pred HhhhhhcchHHHHHHHHhccc----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHH
Q 041786 37 RLNLTLISELSMWKTIELMKP----DSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR 111 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 111 (260)
.++...+...+|.+.|....+ .|-.+. ..+|+.+-..|.+.|++++|+..|++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l------------------ 106 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI------------------ 106 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------------
Confidence 344445555566666654422 232222 578999999999999999999999987752
Q ss_pred HHhCCCCC-CHhhHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC-hhchHHHHHHHHhc
Q 041786 112 MIRKGFVP-DKRTHTILVNAWCSS-GKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD-LETFNSLIETICKS 188 (260)
Q Consensus 112 m~~~g~~p-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~ 188 (260)
..+.|-.. -..+++.+-..|... |++++|+..|++..+ ++. ..+..+. ..+|..+-..|.+.
T Consensus 107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~------------~~~---~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE------------WYA---QDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------HHH---HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH------------HHH---hCCChHHHHHHHHHHHHHHHHh
Confidence 11122111 135777888889986 999999999987553 221 1111111 24566777777777
Q ss_pred CC-----------CCCCcc---h-----HHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 189 GE-----------LGLCAD---V-----NTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 189 ~~-----------~~~~~~---~-----~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
|+ ....|+ . ..|..+...+...|+.++|...|++..+
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77 111111 1 1566777788899999999999988654
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.30 E-value=0.11 Score=40.69 Aligned_cols=63 Identities=10% Similarity=-0.087 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 141 (260)
+...+..+-..+.+.|++++|+..|++..+. .| +...|..+-..|.+.|++++|.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------------~p~~~~~~~~la~~~~~~~~~~~A~ 58 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR------------------------NPLVAVYYTNRALCYLKMQQPEQAL 58 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCccHHHHHHHHHHHHHhcCHHHHH
Confidence 4667788888999999999999999988763 23 5667777888888888899888
Q ss_pred HHHHHHHh
Q 041786 142 EFLQELSD 149 (260)
Q Consensus 142 ~~~~~m~~ 149 (260)
..+++..+
T Consensus 59 ~~~~~al~ 66 (281)
T 2c2l_A 59 ADCRRALE 66 (281)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 88887665
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.29 E-value=0.14 Score=36.53 Aligned_cols=113 Identities=10% Similarity=0.005 Sum_probs=79.8
Q ss_pred hhhhhHHHHHHHHccc---chhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcCCh--HHHHHHH
Q 041786 14 YFAAVNHIANIVRHDI---YAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEE-FGKHGLI--DNAVEVF 87 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~~~--~~a~~~~ 87 (260)
+..++..+...+..+. .....+-.++...+....|.+.|+...+.. +.+...|..+... |.+.|++ ++|...|
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~ 104 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMI 104 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3344444555444433 333445555666777779999998876543 1356778888888 7789998 9999999
Q ss_pred HHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 88 NKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 88 ~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
++..+.. +-+...+..+-..|.+.|++++|...|++..+.
T Consensus 105 ~~al~~~-----------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 105 DKALALD-----------------------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhC-----------------------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9887632 123567777888999999999999999988764
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.28 E-value=0.16 Score=39.84 Aligned_cols=129 Identities=10% Similarity=-0.059 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
..+...+..+...|++++|.+.+++..+..-.. .... .....+..+...+...|++++|...|
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~ 138 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-PEFQ----------------QFLQWQYYVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC-HHHH----------------HHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC-hhHH----------------HHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 344566778889999999999998776532111 0000 00112233445566777888888887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCCCCCC--hhchHHHHHHHHhcCC-----------------CCCCc--chHHHHHH
Q 041786 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPD--LETFNSLIETICKSGE-----------------LGLCA--DVNTNKIS 203 (260)
Q Consensus 145 ~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~~~~~~-----------------~~~~~--~~~t~~~l 203 (260)
++..+.... ...+. ..+|+.+-..|...|+ ....+ ...+|..+
T Consensus 139 ~~al~~~~~----------------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 139 KKLLNQQLT----------------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHHTTCCC----------------SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhc----------------CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 766542110 00111 2245555555555555 11111 22577888
Q ss_pred HHhhhhhccHHHHHHHHHHHHHC
Q 041786 204 IPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
-..|.+.|++++|...+++..+.
T Consensus 203 g~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999887643
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.23 E-value=0.062 Score=42.31 Aligned_cols=56 Identities=5% Similarity=0.036 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
.+-.+...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~------------------------p~~~~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG------------------------SEHLVAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------------CchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44556778889999999999999887532 332233333346667777777777775
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.21 E-value=0.078 Score=37.51 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=70.6
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCC
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g 116 (260)
..+...+...+|.+.|+...+.. +-+...|..+-..|.+.|++++|+..|++..+..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------- 75 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---------------------- 75 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------
Confidence 34445556668888998876543 2367889999999999999999999999888632
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 117 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.-+...|..+-..|.+.|++++|.+.|++..+
T Consensus 76 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 76 -PKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 12467888888999999999999999998765
No 141
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.21 E-value=0.063 Score=42.60 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
..|+.....|...|++++|...|.+..+
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566677788899999999999988765
No 142
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.20 E-value=0.077 Score=43.34 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC-Cc----HHHHHHHHHHH-------------H----HHHhCCC-CCC
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-QC----VLLYNSLHVCF-------------V----RMIRKGF-VPD 120 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~-------------~----~m~~~g~-~p~ 120 (260)
..+++.+-..|...|++++|...|++..+..-. ++ ..++..+-.++ + .....+. ...
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 456666666666666666666666665532100 11 11233332222 1 1112233 233
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHH--HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcc-
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGF-NPPVR--SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD- 196 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~--~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~- 196 (260)
..++..+-..|.+.|++++|.+.+++..+... .++.. .....+..+-.. ..+...+...+..+-+. +..|+
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS--GPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHC---cCHHHH
Confidence 56788889999999999999999987654210 00110 111111111111 01112233333333333 23333
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
...+..+-..|...|+.++|...|++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677788899999999999999988764
No 143
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.18 E-value=0.048 Score=38.27 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=59.3
Q ss_pred HHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhH
Q 041786 47 SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTH 124 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~ 124 (260)
.|...+...... .|+ ...+-.+-..|.+.|++++|++.|++..+. .| +...|
T Consensus 15 ~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~------------------------~p~~~~a~ 68 (150)
T 4ga2_A 15 RYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV------------------------QERDPKAH 68 (150)
T ss_dssp HHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTTCHHHH
T ss_pred HHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCCCHHHH
Confidence 566666554433 233 345566788999999999999999998863 24 56788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 125 TILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..+-..|.+.|++++|+..|++..+
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHH
Confidence 8888999999999999999998775
No 144
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.14 E-value=0.1 Score=42.50 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=62.8
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcc
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGF---NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD 196 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 196 (260)
...++..+-..|.+.|++++|.+.+++..+... .+.......++..+-.. ..+...+...+..+-+.+ ..++
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~--~~~~~~~~~al~~~~~~~---~~~~ 334 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE--TVDERKIHDLLSYFEKKN---LHAY 334 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhCC---ChhH
Confidence 366778888999999999999999998765321 12222333333333221 122233444444444432 2233
Q ss_pred -hHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 197 -VNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 197 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
...+..+-..|...|+.++|...|++..+
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566788889999999999999987654
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.14 E-value=0.017 Score=38.51 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=62.5
Q ss_pred HHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 041786 47 SMWKTIELMKPDSL--SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTH 124 (260)
Q Consensus 47 ~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~ 124 (260)
+|.+.|+...+.+. +-+...|..+-..|.+.|++++|+..|++..+.. +-+...+
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~ 64 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----------------------PNHQALR 64 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CCchHHH
Confidence 66777777665531 2246778888899999999999999999987632 1246677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 125 TILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 125 ~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..+-.++.+.|++++|.+.|++...
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7888899999999999999998765
No 146
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.13 E-value=0.083 Score=47.15 Aligned_cols=133 Identities=11% Similarity=-0.106 Sum_probs=79.1
Q ss_pred chhhhhHHHHHHH--------Hcc---cchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH
Q 041786 13 DYFAAVNHIANIV--------RHD---IYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLID 81 (260)
Q Consensus 13 ~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 81 (260)
.+..++..+.+.+ ..+ ......+-..+...+...+|.+.|+...+.. .-+...|..+-..|.+.|+++
T Consensus 406 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~ 484 (681)
T 2pzi_A 406 QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYD 484 (681)
T ss_dssp CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHH
Confidence 3445556666655 222 2333444455666777779999999886543 125788888999999999999
Q ss_pred HHHHHHHHhhhcCCCC-cHHHHHHHHHHHHHHHhC----------CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 82 NAVEVFNKCTAFNCQQ-CVLLYNSLHVCFVRMIRK----------GFVP-DKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 82 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~m~~~----------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
+|+..|++..+.. | +...|..+-.++..+.+. .+.| +...|..+-.+|.+.|++++|.+.|++..
T Consensus 485 ~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 485 SATKHFTEVLDTF--PGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 9999999988753 3 233333333333111000 0122 23445555556666666666666665444
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.12 E-value=0.029 Score=44.03 Aligned_cols=87 Identities=9% Similarity=-0.106 Sum_probs=68.5
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+...+|.+.|+...+.. +-+...|..+-..|.+.|++++|+..+++..+.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------------ 67 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL------------------------ 67 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------------------
Confidence 3444556668888888876542 226788999999999999999999999987752
Q ss_pred CC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 118 VP-DKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 118 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.| +...+..+-.+|.+.|++++|...|++..+
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23 456778888899999999999999987654
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.11 E-value=0.35 Score=37.78 Aligned_cols=86 Identities=7% Similarity=-0.020 Sum_probs=50.0
Q ss_pred cchHHHHHHHHhcccC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 43 ISELSMWKTIELMKPD-SLSVFP----QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~-g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
+...+|.+++++..+. ...|+. ..|..+...+...+++++|+..|++..+... -
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~---------------------~ 147 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL---------------------T 147 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC---------------------C
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc---------------------c
Confidence 3334566666555432 112221 1222344555555666666666666554211 1
Q ss_pred CCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 118 VPD----KRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 118 ~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.++ ..+++.+-..|.+.|++++|...|++..+
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122 33688889999999999999999997653
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.14 Score=34.18 Aligned_cols=87 Identities=15% Similarity=-0.056 Sum_probs=68.8
Q ss_pred hhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCC
Q 041786 39 NLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~ 118 (260)
+...+...+|.+.|+...+.. +.+...|..+-..|.+.|++++|+..|++..+.. +
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------------p 69 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-----------------------P 69 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------C
Confidence 444555668888888875543 2357889999999999999999999999887632 1
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
-+...|..+-.++...|++++|.+.|++..+
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 2466788888899999999999999998765
No 150
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.07 E-value=0.37 Score=37.65 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=63.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC----hhchHHHHHHHHhcCC-----------
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD----LETFNSLIETICKSGE----------- 190 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~----~~~~~~li~~~~~~~~----------- 190 (260)
.+...+...|++++|...|++..+... -.++ ..+|+.+-..|...|+
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~------------------~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQL------------------TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCC------------------CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhc------------------ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445555666666666666554211 1112 2256777777777776
Q ss_pred ------C-CCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHCC----CCcCCCc------------c-cHHHHHHHHH
Q 041786 191 ------L-GLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVEDG----HKLFPSL------------G-QFDDAFCFFS 245 (260)
Q Consensus 191 ------~-~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~------------g-~~~~a~~~~~ 245 (260)
. +..+. ..+|..+-..|.+.|++++|...+++..+.. ..+.... | ..++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 1 33333 3478888899999999999999988776432 1111111 6 4688888887
Q ss_pred HHH
Q 041786 246 EMQ 248 (260)
Q Consensus 246 ~m~ 248 (260)
+..
T Consensus 262 ~Al 264 (293)
T 3u3w_A 262 KAS 264 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.99 E-value=0.08 Score=35.92 Aligned_cols=96 Identities=6% Similarity=-0.068 Sum_probs=68.3
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
+-..+...+...+|++.|+...+.. +-+...|+.+-.+|.+.|++++|++.|++..+.. | .
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~----------------~ 74 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--R----------------E 74 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H----------------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--c----------------c
Confidence 4445556666678999998876542 2357889999999999999999999999877521 0 0
Q ss_pred CCCC-C-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 115 KGFV-P-DKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 115 ~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.... + -..+|..+=.++...|++++|++.|++...
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0000 0 123566667788889999999999997665
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.98 E-value=0.15 Score=34.34 Aligned_cols=91 Identities=9% Similarity=-0.092 Sum_probs=70.7
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIR 114 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~ 114 (260)
+-..+...+....|.+.|....+.. +.+...|..+-..|.+.|++++|...|+...+..
T Consensus 15 ~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------------- 73 (137)
T 3q49_B 15 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------------------- 73 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------
Confidence 3344455566668888888875543 2357889999999999999999999999887632
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 115 KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 115 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+-+...|..+-..|.+.|++++|...|++..+
T Consensus 74 ---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 74 ---GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12466788888999999999999999997764
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.17 Score=32.73 Aligned_cols=89 Identities=12% Similarity=-0.087 Sum_probs=69.0
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+...+|.+.|+...+.. +.+...|..+...+.+.|++++|...+++..+..
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------- 68 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----------------------- 68 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----------------------
Confidence 3444555668888888875543 2367888889999999999999999999887532
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 118 VPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 118 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
+.+...+..+-..+.+.|++++|.+.|+...+.
T Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 69 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 124667888888999999999999999987753
No 154
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.95 E-value=0.1 Score=34.27 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=61.0
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTI 126 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~ 126 (260)
.|.+.|+...+.. +-+...|..+-..|.+.|++++|+..|++..+.. +.+...|..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p~~~~~~~~ 58 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----------------------PTYSVAWKW 58 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----------------------CCcHHHHHH
Confidence 3555666654432 2357888999999999999999999999887632 124567788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh
Q 041786 127 LVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+-..|.+.|++++|...|++..+
T Consensus 59 la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 59 LGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999997764
No 155
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.91 E-value=0.19 Score=43.52 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=52.7
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHT 125 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~ 125 (260)
+|.+.+++..+.. +-+...|..+-..|.+.|++++|...|++..+. .| +...|.
T Consensus 7 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------~p~~~~~~~ 61 (568)
T 2vsy_A 7 RELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL------------------------HPGHPEAVA 61 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------------------------STTCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCCCHHHHH
Confidence 5666666654432 124778888889999999999999999987752 23 466778
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
.+-..|.+.|++++|.+.|++..+.
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888889999999999999987653
No 156
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.88 E-value=0.23 Score=36.76 Aligned_cols=114 Identities=11% Similarity=-0.046 Sum_probs=76.7
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH-----
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----- 109 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----- 109 (260)
+-..+...+...+|.+.|+...+.. +-+...|..+-..|.+.|++++|+..|++..+.. +-+...|..+-.++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 4445666677779999998876653 2357889999999999999999999999998764 22355666555433
Q ss_pred ------HHHHhCCCCCCHhh--HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 110 ------VRMIRKGFVPDKRT--HTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 110 ------~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
....+.-+.|+... +...-.++...|++++|+..|++..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 11112223444433 333344556678999999999988763
No 157
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.12 Score=33.43 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+...|..+-..+.+.|++++|+..|++..+.. +.+...|..+-.+|.+.|++++|.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~lg~~~~~~g~~~~A~~ 59 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----------------------PQNPVGYSNKAMALIKLGEYTQAIQ 59 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 46678888899999999999999999887632 1256778888889999999999999
Q ss_pred HHHHHHhC
Q 041786 143 FLQELSDK 150 (260)
Q Consensus 143 ~~~~m~~~ 150 (260)
.|++..+.
T Consensus 60 ~~~~al~~ 67 (111)
T 2l6j_A 60 MCQQGLRY 67 (111)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHh
Confidence 99988763
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.79 E-value=0.072 Score=35.83 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=69.3
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
.+...+...+|...|+...+.. +-+...|..+-..+.+.|++++|+..|++..+.
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------------------ 80 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------------ 80 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------
Confidence 3445556668999998876543 226788888889999999999999999988763
Q ss_pred CC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 118 VP-DKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 118 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.| +...+..+-..|.+.|++++|...|++..+
T Consensus 81 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 81 DPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24 456777888899999999999999998765
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.73 E-value=0.12 Score=41.73 Aligned_cols=94 Identities=9% Similarity=-0.085 Sum_probs=72.9
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCc
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVF--------------PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQC 98 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 98 (260)
..+-..+...+...+|.+.|+...+..-... ...|..+-.+|.+.|++++|+..|++..+..
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---- 226 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD---- 226 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 3444455566677789999988765432211 5889999999999999999999999888632
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 99 VLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 99 ~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+.+...|..+-.+|.+.|++++|...|++..+
T Consensus 227 -------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 227 -------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12567788888999999999999999998776
No 160
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.66 E-value=0.75 Score=41.03 Aligned_cols=90 Identities=8% Similarity=0.031 Sum_probs=52.7
Q ss_pred HHH-HHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC------
Q 041786 47 SMW-KTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP------ 119 (260)
Q Consensus 47 ~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p------ 119 (260)
.|. ++++.-... ++.+...|-..+...-+.|++++|.++|+.+.+... ..++.. ..+. |
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~-----------~~~~~~-~~~~-p~~~~~~ 426 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH-----------LDLAAL-MEDD-PTNESAI 426 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHHHHH-HHHS-TTCHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----------HHhhhh-hhcc-Ccchhhh
Confidence 554 666655432 223455566677777777888888888877664210 000000 0001 2
Q ss_pred ------CHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 120 ------DKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 120 ------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
....|...++...+.|.++.|..+|....+.
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1236777777777788888888888887664
No 161
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.61 E-value=0.11 Score=33.35 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 141 (260)
+...|..+-..|.+.|++++|+..|++..+.. | +...|..+-.+|.+.|++++|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------p~~~~a~~~lg~~~~~~g~~~~A~ 61 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD------------------------PDYVGTYYHLGKLYERLDRTDDAI 61 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------------TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 56788899999999999999999999988632 3 4567888899999999999999
Q ss_pred HHHHHHHh
Q 041786 142 EFLQELSD 149 (260)
Q Consensus 142 ~~~~~m~~ 149 (260)
+.|++..+
T Consensus 62 ~~~~~al~ 69 (100)
T 3ma5_A 62 DTYAQGIE 69 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99997654
No 162
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.56 E-value=0.21 Score=30.81 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
+...|..+-..+.+.|++++|...|++..+.. +.+...+..+-..|.+.|++++|..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PNNAEAWYNLGNAYYKQGDYDEAIE 64 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 35677888889999999999999999877532 1245677788889999999999999
Q ss_pred HHHHHHh
Q 041786 143 FLQELSD 149 (260)
Q Consensus 143 ~~~~m~~ 149 (260)
.|++..+
T Consensus 65 ~~~~a~~ 71 (91)
T 1na3_A 65 YYQKALE 71 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998775
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.48 E-value=0.29 Score=34.89 Aligned_cols=118 Identities=14% Similarity=-0.065 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC-CcHHHHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhccCCHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-QCVLLYNSLHVCFVRMIRKGFV-PDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
..+...-..+.+.|++++|+..|++..+..-. |+.. ..... .+...|+.+-.++.+.|++++|+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-------------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~ 78 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-------------AFDHAGFDAFCHAGLAEALAGLRSFDEALH 78 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-------------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-------------hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555566778899999999999988763210 0000 00000 023388889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
.+++..+ +|+.-. .+.|+ -...++.++ ...-.++...|++++|...|++
T Consensus 79 ~~~kAL~------------l~n~~~--e~~pd--~~~A~~~~~---------------~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 79 SADKALH------------YFNRRG--ELNQD--EGKLWISAV---------------YSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHHHH------------HHHHHC--CTTST--HHHHHHHHH---------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHH------------hhhccc--cCCCc--hHHHHHHHH---------------HhHHHHHHHCCCHHHHHHHHHH
Confidence 9986553 333211 12232 122222332 4555788899999999999998
Q ss_pred HHHC
Q 041786 223 LVED 226 (260)
Q Consensus 223 m~~~ 226 (260)
..+.
T Consensus 128 Alel 131 (159)
T 2hr2_A 128 VVEM 131 (159)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8753
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.43 E-value=0.32 Score=35.13 Aligned_cols=137 Identities=10% Similarity=-0.075 Sum_probs=88.6
Q ss_pred HHHhhhhhcchHHHHHHHHhccc----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH
Q 041786 35 LNRLNLTLISELSMWKTIELMKP----DSLSV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF 109 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 109 (260)
+-..+...+...+|.+.+++..+ .|..+ ....+..+-..|...|++++|...|++..+.
T Consensus 32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------- 95 (203)
T 3gw4_A 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL---------------- 95 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------
Confidence 33444455555577777766533 23333 3567888888999999999999999987752
Q ss_pred HHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHh
Q 041786 110 VRMIRKGFVP--DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICK 187 (260)
Q Consensus 110 ~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 187 (260)
..+.+-.| ....+..+-..+...|++++|...+++.... .. +.+ +..
T Consensus 96 --~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------~~---~~~---~~~----------- 144 (203)
T 3gw4_A 96 --LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY------------AQ---QAD---DQV----------- 144 (203)
T ss_dssp --HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------HH---HTT---CHH-----------
T ss_pred --HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------------HH---hcc---chH-----------
Confidence 22223122 2456777888899999999999999876531 11 111 110
Q ss_pred cCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 188 SGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 188 ~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
.-..++..+-..+...|++++|...+++..+
T Consensus 145 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 -------AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1123455666778888999999888877654
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.38 E-value=0.72 Score=35.96 Aligned_cols=152 Identities=6% Similarity=-0.079 Sum_probs=96.5
Q ss_pred hhhhcchHHHHHHHHhcccCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHH
Q 041786 39 NLTLISELSMWKTIELMKPDSLS-VF----PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMI 113 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~ 113 (260)
+...+...+|.+.+....+.... ++ ...+..+...+...|++++|+..|++..+...
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------------------ 146 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL------------------ 146 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC------------------
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh------------------
Confidence 34445555788887765443221 11 12334455667788999999999998764211
Q ss_pred hCCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC--ChhchHHHHHHHHhcC
Q 041786 114 RKGFVPD--KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP--DLETFNSLIETICKSG 189 (260)
Q Consensus 114 ~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p--~~~~~~~li~~~~~~~ 189 (260)
....+. ..+|+.+-..|...|++++|...|++..+ ++. ..+-.+ ...+|..+-..|.+.|
T Consensus 147 -~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~------------~~~---~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 147 -TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK------------QLE---ALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp -CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHH---HSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred -cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------HHH---hcCccccchHHHHHhHHHHHHHHh
Confidence 111122 45788889999999999999999997653 111 111111 1246777777777777
Q ss_pred C-----------------CCCCc-chHHHHHHHHhhhhhccHHHH-HHHHHHHH
Q 041786 190 E-----------------LGLCA-DVNTNKISIPAVSKEFMIDEA-FRLLCNLV 224 (260)
Q Consensus 190 ~-----------------~~~~~-~~~t~~~li~~~~~~g~~~~a-~~~~~~m~ 224 (260)
+ .+... -..+|..+-..|.+.|+.++| ...|++..
T Consensus 211 ~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7 11111 256788888889999999999 77676654
No 166
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.35 E-value=0.15 Score=40.31 Aligned_cols=127 Identities=6% Similarity=-0.004 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
...|+.+-..|.+.|++++|+..|++..+. ..+.|-.. -..+++.+-..|.+ |++++|++
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l------------------~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVM------------------YVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHH------------------HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------------------HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 457888889999999999999999987642 11122111 13466667777777 88888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhcCC-----------------CCCCcc-hHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGE-----------------LGLCAD-VNTNKIS 203 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~~~-----------------~~~~~~-~~t~~~l 203 (260)
.|++... ++.. .|..+ ...++..+-..|.+.|+ .+..+. ...+..+
T Consensus 137 ~~~~Al~------------~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 137 LYQQAAA------------VFEN---EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHHHH------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH------------HHHh---CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 8876543 2211 11100 12345555556666665 111122 2255566
Q ss_pred HHhhhhhccHHHHHHHHHHHH
Q 041786 204 IPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~ 224 (260)
...+...|+.++|...|++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 666777788888888888876
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.36 Score=39.81 Aligned_cols=168 Identities=12% Similarity=0.057 Sum_probs=90.7
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCcHH-HHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 041786 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVL-LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK 150 (260)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 150 (260)
..+.+.|++++|++.|....+..-..... ........ . ..--...+..+...|.+.|++++|.+.+......
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~--~-----~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDK--R-----RNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSH--H-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHH--H-----hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678899999999999887643111000 00000000 0 0000123677889999999999999999876542
Q ss_pred -CCCCCHHHHHHHHHHHHHCCCCCCh-----hchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 151 -GFNPPVRSAKQMVNKMIKQGSVPDL-----ETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 151 -~~~~~~~~a~~l~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
+..++...+..+...+......++. ..|...+......++ ......++..+...|...|++++|..++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR--VFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC--CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 1112222121222222111111111 122223333333321 12235567788888899999999999988876
Q ss_pred HCCCCcCCCc----------------ccHHHHHHHHHHHH
Q 041786 225 EDGHKLFPSL----------------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 225 ~~~~~p~~~~----------------g~~~~a~~~~~~m~ 248 (260)
..-...+... |++++|..+++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4422222222 88888888887655
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.30 E-value=0.22 Score=36.36 Aligned_cols=113 Identities=12% Similarity=-0.049 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC-CcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQ-QCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
...+..+-..+.+.|++++|+..|++..+..-. |+... ..+.... .......|..+-.+|.+.|++++|+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--QILLDKK------KNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--HHHHHHH------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch--hhHHHHH------HHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 345667778888999999999999988763200 00000 0000000 00013677788888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
.++...+. .|+ +...|..+-.+|...|++++|...|++
T Consensus 110 ~~~~al~~---------------------~p~---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 110 HASKVLKI---------------------DKN---------------------NVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHH---------------------STT---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHh---------------------Ccc---------------------cHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99987652 121 233455556667777888888888877
Q ss_pred HHHC
Q 041786 223 LVED 226 (260)
Q Consensus 223 m~~~ 226 (260)
..+.
T Consensus 148 al~~ 151 (198)
T 2fbn_A 148 AASL 151 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.26 E-value=0.056 Score=35.90 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=61.9
Q ss_pred hcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 041786 76 KHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNP 154 (260)
Q Consensus 76 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 154 (260)
..|++++|+..|++..+.+.. .| +...|..+-..|.+.|++++|...|++..+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~---------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 56 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ---------------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---- 56 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC---------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCcHHHHHHHHHHHHHcCCC---------------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 357788888888887753210 13 3567778888999999999999999987752
Q ss_pred CHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 155 PVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 155 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
.|+ +...+..+-.+|.+.|++++|...|++....
T Consensus 57 -----------------~p~---------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 57 -----------------FPN---------------------HQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp -----------------CTT---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------------CCC---------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122 2445666777888999999999999988764
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.11 E-value=0.079 Score=36.56 Aligned_cols=114 Identities=15% Similarity=0.038 Sum_probs=71.5
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC-CChhchHHHHHHHHhcCC---------
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV-PDLETFNSLIETICKSGE--------- 190 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~-p~~~~~~~li~~~~~~~~--------- 190 (260)
..++..+-..|...|++++|...+++..+. ... .+-. .-...+..+-..|...|+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI------------AKE---FGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------HHH---hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346777888889999999999999876542 111 0000 001244555555555555
Q ss_pred --------CCCCc-chHHHHHHHHhhhhhccHHHHHHHHHHHHHC----CCCcCCCc------------ccHHHHHHHHH
Q 041786 191 --------LGLCA-DVNTNKISIPAVSKEFMIDEAFRLLCNLVED----GHKLFPSL------------GQFDDAFCFFS 245 (260)
Q Consensus 191 --------~~~~~-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~------------g~~~~a~~~~~ 245 (260)
.+..+ ....+..+-..+...|++++|...+++..+. +..+.... |+.++|...++
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 11111 2456777788889999999999999887643 11111111 89999999988
Q ss_pred HHHh
Q 041786 246 EMQI 249 (260)
Q Consensus 246 ~m~~ 249 (260)
+...
T Consensus 154 ~a~~ 157 (164)
T 3ro3_A 154 KHLE 157 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 171
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.09 E-value=1.3 Score=37.34 Aligned_cols=197 Identities=10% Similarity=0.027 Sum_probs=107.7
Q ss_pred hcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------
Q 041786 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGK----HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF-------- 109 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-------- 109 (260)
......|.+.|+...+.| +...+..|-..|.. .+++++|...|++..+.| +...+..+-.++
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 334457778887776654 55666667777776 678888888888877755 223333332222
Q ss_pred ---------HHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCC-----------------CCCCHHHH
Q 041786 110 ---------VRMIRKGFVPDKRTHTILVNAWCS----SGKMREAQEFLQELSDKG-----------------FNPPVRSA 159 (260)
Q Consensus 110 ---------~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~-----------------~~~~~~~a 159 (260)
++..+.| +...+..|-..|.+ .++.++|.+.|++..+.| +..+..+|
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 2222222 45555566666665 677777777777654432 35566677
Q ss_pred HHHHHHHHHCCCCCChhchHHHHHHHHh----cCC---------CCC-CcchHHHHHHHHhhhhh-----ccHHHHHHHH
Q 041786 160 KQMVNKMIKQGSVPDLETFNSLIETICK----SGE---------LGL-CADVNTNKISIPAVSKE-----FMIDEAFRLL 220 (260)
Q Consensus 160 ~~l~~~m~~~g~~p~~~~~~~li~~~~~----~~~---------~~~-~~~~~t~~~li~~~~~~-----g~~~~a~~~~ 220 (260)
..+|....+.| +...+..+-..|.. .++ ... .-+...+..|-..|... ++.++|...|
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 77777766554 33344444444443 222 000 01233344444445444 6777777777
Q ss_pred HHHHHCCCCcCCCc-----------ccHHHHHHHHHHHHhc
Q 041786 221 CNLVEDGHKLFPSL-----------GQFDDAFCFFSEMQIK 250 (260)
Q Consensus 221 ~~m~~~~~~p~~~~-----------g~~~~a~~~~~~m~~~ 250 (260)
++..+.|...-... .+.++|+..|+...+.
T Consensus 320 ~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 320 TKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 77666542110000 2566666666665543
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.05 E-value=0.11 Score=41.87 Aligned_cols=136 Identities=7% Similarity=-0.052 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+-..+.+.|++++|...|++..... |+...+...-...+.... .....|..+-.+|.+.|++++|+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~----l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALA----VKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHH----HHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHH----HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456667778888999999999999877532 332211100000000000 0113778888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
|++..+. .|+ +...|..+-.+|...|++++|...|++.
T Consensus 253 ~~~al~~---------------------~p~---------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 253 CNIVLTE---------------------EEK---------------------NPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHHHH---------------------CTT---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHh---------------------CCC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9977652 121 3344556666777888888888888876
Q ss_pred HHCCCCcCCCc-------------ccHHHHHHHHHHHHh
Q 041786 224 VEDGHKLFPSL-------------GQFDDAFCFFSEMQI 249 (260)
Q Consensus 224 ~~~~~~p~~~~-------------g~~~~a~~~~~~m~~ 249 (260)
.+. .|+... +..+.+..+|+.|..
T Consensus 291 l~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 291 QKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp TC-------------------------------------
T ss_pred HHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 543 232211 555666677776653
No 173
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.00 E-value=0.24 Score=41.64 Aligned_cols=95 Identities=6% Similarity=-0.136 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 041786 77 HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD----KRTHTILVNAWCSSGKMREAQEFLQELSDKGF 152 (260)
Q Consensus 77 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 152 (260)
.|++++|+.++++..+ +.+.-+-|+ ..+++.|..+|...|++++|+.++++..+
T Consensus 311 ~g~~~eA~~~~~~~L~-------------------i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--- 368 (433)
T 3qww_A 311 YKSPSELLEICELSQE-------------------KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--- 368 (433)
T ss_dssp TSCHHHHHHHHHHHHH-------------------HHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred ccCHHHHHHHHHHHHH-------------------HhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---
Confidence 4677888888877664 222222232 46889999999999999999999997653
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 153 NPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 153 ~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
++... .| ...|+ ..+++.|-..|...|+.++|..+|++..+
T Consensus 369 ---------i~~~~--lG---------------------~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 ---------PYSKH--YP---------------------VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ---------HHHHH--SC---------------------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHHH--cC---------------------CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 22221 11 11244 34688888889999999999999987654
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.70 E-value=0.5 Score=33.05 Aligned_cols=110 Identities=14% Similarity=0.042 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcC------CCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFN------CQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKM 137 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 137 (260)
...+...-..+.+.|++++|+..|.+....- -.|+...+..+ -.-+...|..+-.+|.+.|++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~nla~~~~~~~~~ 79 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL-----------DRKNIPLYANMSQCYLNIGDL 79 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHH-----------HHTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHhcCcH
Confidence 4556677788899999999999999877520 00111100000 012346788888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHH
Q 041786 138 REAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAF 217 (260)
Q Consensus 138 ~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~ 217 (260)
++|+..++..... .|+ +...|..+-.+|...|++++|.
T Consensus 80 ~~A~~~~~~al~~---------------------~p~---------------------~~~a~~~~g~~~~~~g~~~~A~ 117 (162)
T 3rkv_A 80 HEAEETSSEVLKR---------------------EET---------------------NEKALFRRAKARIAAWKLDEAE 117 (162)
T ss_dssp HHHHHHHHHHHHH---------------------STT---------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc---------------------CCc---------------------chHHHHHHHHHHHHHhcHHHHH
Confidence 9999999987652 122 2445666667888889999999
Q ss_pred HHHHHHHHC
Q 041786 218 RLLCNLVED 226 (260)
Q Consensus 218 ~~~~~m~~~ 226 (260)
..|++..+.
T Consensus 118 ~~~~~al~l 126 (162)
T 3rkv_A 118 EDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988775
No 175
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.67 E-value=1.2 Score=34.92 Aligned_cols=127 Identities=10% Similarity=-0.090 Sum_probs=86.7
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCC
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g 116 (260)
.++...+...+|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+......
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---------------------- 165 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---------------------- 165 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS----------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC----------------------
Confidence 44555666669999999987654 443355556668899999999999998544310
Q ss_pred CCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCC
Q 041786 117 FVPD--KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLC 194 (260)
Q Consensus 117 ~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 194 (260)
.|. ...+..+=.++.+.|++++|++.|++..... ..|..
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-------------------~~P~~------------------- 206 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-------------------AGEAC------------------- 206 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-------------------TTTTT-------------------
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-------------------CCccc-------------------
Confidence 111 2345566778899999999999999765321 00211
Q ss_pred cchHHHHHHHHhhhhhccHHHHHHHHHHHHHCC
Q 041786 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDG 227 (260)
Q Consensus 195 ~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (260)
........-.++.+.|+.++|..+|+++....
T Consensus 207 -~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 207 -ARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11223334456788899999999999998754
No 176
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.43 E-value=0.8 Score=40.82 Aligned_cols=163 Identities=10% Similarity=0.032 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHH-HHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAV-EVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 141 (260)
+...|-.....+.+.|+.++|. ++|+..... ++.+...|-..+...-+.|+++.|.
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-----------------------~P~s~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-----------------------IPNSAVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-----------------------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4455555555566666666675 777665431 2234455666777777888888888
Q ss_pred HHHHHHHhCC---------CCC----------------------------CHHHHHHHHHHHHHC-C-CCCChhchHHHH
Q 041786 142 EFLQELSDKG---------FNP----------------------------PVRSAKQMVNKMIKQ-G-SVPDLETFNSLI 182 (260)
Q Consensus 142 ~~~~~m~~~~---------~~~----------------------------~~~~a~~l~~~m~~~-g-~~p~~~~~~~li 182 (260)
++|+.+.... ..| +...|..+|....+. + ..+......+.+
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 8888776531 012 122788888887765 2 122222222333
Q ss_pred HHHHhcCC-------------CCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc-------------cc
Q 041786 183 ETICKSGE-------------LGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL-------------GQ 236 (260)
Q Consensus 183 ~~~~~~~~-------------~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------------g~ 236 (260)
.- +.+. ..+.-+...|...+.-....|+.+.|..+|+........+.... |+
T Consensus 479 E~--~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 479 EY--HISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HH--TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HH--HhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 32 2221 11122345566777777788999999999998876543221111 88
Q ss_pred HHHHHHHHHHHHhc
Q 041786 237 FDDAFCFFSEMQIK 250 (260)
Q Consensus 237 ~~~a~~~~~~m~~~ 250 (260)
.+.+.++.++|...
T Consensus 557 ~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 557 LNSVRTLEKRFFEK 570 (679)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999888765
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.38 E-value=0.13 Score=44.07 Aligned_cols=132 Identities=8% Similarity=-0.056 Sum_probs=88.6
Q ss_pred cchHHHHHHHHhccc---C--CC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC
Q 041786 43 ISELSMWKTIELMKP---D--SL-SV-FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~---~--g~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~ 115 (260)
+...+|+.++++..+ . |- .| ...+++.|...|...|++++|+.++++..+. .....
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----------------~~~~l 385 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG-----------------YMKLY 385 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------HHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------HHHHc
Confidence 344466666644321 1 21 12 3578999999999999999999999987752 01112
Q ss_pred C-CCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCC
Q 041786 116 G-FVPD-KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193 (260)
Q Consensus 116 g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 193 (260)
| --|+ ..+++.|-..|...|++++|+.++++.. +++... .| ||
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al------------~i~~~~--lG--~~------------------- 430 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY------------AILLVT--HG--PS------------------- 430 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHH--TC--TT-------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------HHHHHH--hC--CC-------------------
Confidence 2 1233 5688999999999999999999998644 333332 11 11
Q ss_pred Ccc-hHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 194 CAD-VNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 194 ~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
.|+ ..+.+.+-.++...|++++|+.+|..+++.
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 132 234566667888899999999999998764
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.34 E-value=0.79 Score=33.24 Aligned_cols=90 Identities=11% Similarity=-0.091 Sum_probs=67.8
Q ss_pred HhhhhhcchHHHHHHHHhcccCCC-CCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHH
Q 041786 37 RLNLTLISELSMWKTIELMKPDSL-SVF--------------PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLL 101 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~-~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 101 (260)
..+...+...+|.+.|+...+..- .|+ ...|..+-..|.+.|++++|+..++...+..
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------- 118 (198)
T 2fbn_A 46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID------- 118 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 334455566689998888755321 121 2788888899999999999999999887631
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 102 YNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 102 ~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..+...+..+-.+|.+.|++++|.+.|++..+
T Consensus 119 ----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 ----------------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 13566778888899999999999999998765
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.24 E-value=0.52 Score=39.72 Aligned_cols=78 Identities=10% Similarity=-0.085 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+-..|.+.|++++|+..|++..+.. |+...+..-.. .+. -.-....|..+-.+|.+.|++++|+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~--~~~----~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKES--KAS----ESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHH--HHH----HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHH--HHH----HHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4567778889999999999999999887531 00000000000 000 000146788888899999999999999
Q ss_pred HHHHHh
Q 041786 144 LQELSD 149 (260)
Q Consensus 144 ~~~m~~ 149 (260)
|++..+
T Consensus 340 ~~~al~ 345 (457)
T 1kt0_A 340 CDKALG 345 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998775
No 180
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.21 E-value=0.15 Score=42.87 Aligned_cols=88 Identities=9% Similarity=-0.034 Sum_probs=62.3
Q ss_pred chHHHHHHHHhccc---C--CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCC
Q 041786 44 SELSMWKTIELMKP---D--SL-SVF-PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116 (260)
Q Consensus 44 ~~~~a~~~~~~m~~---~--g~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g 116 (260)
...+|+.++++..+ . |- .|+ ..+++.|...|...|++++|+.++++..+. .....|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----------------~~~~lG 375 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-----------------YSKHYP 375 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------HHHHSC
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----------------HHHHcC
Confidence 34466666655322 2 21 122 578999999999999999999999988752 111122
Q ss_pred -CCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 117 -FVPD-KRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 117 -~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
--|+ ..+++.|-..|...|++++|+.++++..
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 2233 4688999999999999999999998654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.05 E-value=0.23 Score=42.20 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=36.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..+.+.|++++|++.|++..+.. | -+...|..+-.+|.+.|++++|++.+++..+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 68 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--P---------------------SNAIYYGNRSLAYLRTECYGYALGDATRAIE 68 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--T---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--C---------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567899999999999887642 1 1345556666666666666666666665554
No 182
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.99 E-value=0.52 Score=39.52 Aligned_cols=103 Identities=13% Similarity=0.001 Sum_probs=72.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC----CHhhHHHHHHHHhccCCHHHHHHHH
Q 041786 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP----DKRTHTILVNAWCSSGKMREAQEFL 144 (260)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~ 144 (260)
..+..+.+.|++++|+.++++..+.. +.-+.| ...+++.|...|...|++++|+.++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~-------------------~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~ 352 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSN-------------------SERLPDINIYQLKVLDCAMDACINLGLLEEALFYG 352 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCS-------------------SCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhc-------------------cCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33566777889999999998877531 111222 3468899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcc-hHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 145 QELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCAD-VNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 145 ~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~-~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
++... ++... .| ...|+ ..+++.|-..|...|++++|..++++.
T Consensus 353 ~~~L~------------i~~~~--lg---------------------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 353 TRTME------------PYRIF--FP---------------------GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHH------------HHHHH--SC---------------------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH------------hHHHH--cC---------------------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 86653 22221 11 12243 346778888899999999999998876
Q ss_pred HH
Q 041786 224 VE 225 (260)
Q Consensus 224 ~~ 225 (260)
.+
T Consensus 398 l~ 399 (429)
T 3qwp_A 398 FD 399 (429)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.39 E-value=0.65 Score=39.12 Aligned_cols=92 Identities=8% Similarity=-0.062 Sum_probs=70.4
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHH
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVF--------------PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVL 100 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 100 (260)
.-..+...+....|.+.|+...+..-... ...|..+-.+|.+.|++++|+..|++..+..
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------ 347 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD------ 347 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Confidence 34445556666688888887654321111 5788899999999999999999999988632
Q ss_pred HHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 101 LYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 101 ~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.-+...|..+-.+|.+.|++++|+..|++..+
T Consensus 348 -----------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 -----------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 12567788888999999999999999998876
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.26 E-value=2.9 Score=34.21 Aligned_cols=145 Identities=11% Similarity=-0.011 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCcHHH---HHHHH-HHH-----------------HHHHhCCCCCC-Hh
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFN-CQQCVLL---YNSLH-VCF-----------------VRMIRKGFVPD-KR 122 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~---~~~li-~~~-----------------~~m~~~g~~p~-~~ 122 (260)
.+..|...|.+.|++++|.+.+......- ..++..+ ....+ ..+ ......+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 47788899999999999999998876531 1122111 11111 111 11222333333 45
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCC-ChhchHHHHHHHHhcCC-----------
Q 041786 123 THTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVP-DLETFNSLIETICKSGE----------- 190 (260)
Q Consensus 123 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~~~----------- 190 (260)
++..+...|...|++++|..++++....- ...+-.| ....|..+...|...|+
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREF---------------KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHH---------------HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 67778888999999999999888765321 0111111 12355556666666665
Q ss_pred ------CCCCcc--hHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 191 ------LGLCAD--VNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 191 ------~~~~~~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
....+. ...+..+...+...|++++|...|.+..+
T Consensus 202 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 202 RTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111111 34566666677777888888777666543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=93.01 E-value=1.3 Score=36.19 Aligned_cols=112 Identities=13% Similarity=-0.038 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHH
Q 041786 65 QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 65 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
..|..+-..+.+.|++++|+..|++..+.- +... .. ...+.. ....| +...|..+-.+|.+.|++++|++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~---~~-~~~~~~--~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR---AA-AEDADG--AKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH---HH-SCHHHH--GGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc---cc-cChHHH--HHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 457777888999999999999999877510 0000 00 000000 01222 456788888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 144 LQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 144 ~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
+++..+. .|+ +...|..+-.+|...|++++|...|++.
T Consensus 296 ~~~al~~---------------------~p~---------------------~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 296 CLEALEI---------------------DPS---------------------NTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp HHHHHTT---------------------CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh---------------------Cch---------------------hHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9987752 221 2344555667778888999999999888
Q ss_pred HHC
Q 041786 224 VED 226 (260)
Q Consensus 224 ~~~ 226 (260)
.+.
T Consensus 334 l~l 336 (370)
T 1ihg_A 334 QEI 336 (370)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.99 E-value=0.75 Score=29.31 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=49.8
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHH
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t 199 (260)
+...+..+-..|.+.|++++|+..|++..+. .|+ +...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~p~---------------------~~~a 43 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET---------------------DPD---------------------YVGT 43 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STT---------------------CTHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCC---------------------cHHH
Confidence 4567788888999999999999999987752 121 2345
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 200 NKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
|..+-.+|...|++++|...|++..+.
T Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 44 YYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666777788888999999998887643
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.71 E-value=1.1 Score=31.28 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEF 143 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 143 (260)
...|..+-.+|.+.|++++|+..++...+.. +.+...|..+-.+|...|++++|...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-----------------------ETNEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----------------------CcchHHHHHHHHHHHHHhcHHHHHHH
Confidence 4678888999999999999999999887632 12467788888999999999999999
Q ss_pred HHHHHhC
Q 041786 144 LQELSDK 150 (260)
Q Consensus 144 ~~~m~~~ 150 (260)
|+.....
T Consensus 120 ~~~al~l 126 (162)
T 3rkv_A 120 LKLLLRN 126 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9987763
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.91 E-value=1.1 Score=37.99 Aligned_cols=84 Identities=7% Similarity=-0.128 Sum_probs=55.1
Q ss_pred hcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCH
Q 041786 42 LISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDK 121 (260)
Q Consensus 42 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~ 121 (260)
.+...+|.+.+++..+.. +-+...|..+-..|.+.|++++|+..|++..+.. .-+.
T Consensus 19 ~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------------------p~~~ 74 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----------------------KKYI 74 (477)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----------------------TTCH
T ss_pred hCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------CCCH
Confidence 334446777776654432 1246778888888888888888888888776531 1234
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..|..+-.+|.+.|++++|.+.|++..+
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666677777777777777776554
No 189
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.33 E-value=0.25 Score=41.49 Aligned_cols=89 Identities=11% Similarity=-0.056 Sum_probs=63.0
Q ss_pred cchHHHHHHHHhcccC---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC
Q 041786 43 ISELSMWKTIELMKPD---SLSV----FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK 115 (260)
Q Consensus 43 ~~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~ 115 (260)
+...+|+++++...+. -+.| ...+++.|...|...|++++|+.++++..+. .....
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i-----------------~~~~l 363 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP-----------------YRIFF 363 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------HHHHS
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------HHHHc
Confidence 3444777777665322 1222 2568899999999999999999999987751 01111
Q ss_pred C-CCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 116 G-FVPD-KRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 116 g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
| --|+ ..+++.|-..|...|++++|+.++++..
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2 2233 4688899999999999999999998644
No 190
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=91.22 E-value=3.4 Score=30.37 Aligned_cols=58 Identities=9% Similarity=-0.130 Sum_probs=43.1
Q ss_pred HHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHhhhcC
Q 041786 33 RTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG----LIDNAVEVFNKCTAFN 94 (260)
Q Consensus 33 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~ 94 (260)
..+-.++.......+|.+.|+...+.| +...+..|-..|.. + +.++|...|++..+.|
T Consensus 22 ~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g 83 (212)
T 3rjv_A 22 YYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG 83 (212)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC
Confidence 334444555566679999999887765 56777777777877 6 8999999999887643
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.03 E-value=2.8 Score=29.72 Aligned_cols=94 Identities=14% Similarity=0.005 Sum_probs=65.0
Q ss_pred hhhhcchHHHHHHHHhcccCCCC-C-----C-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH
Q 041786 39 NLTLISELSMWKTIELMKPDSLS-V-----F-----PQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV 107 (260)
Q Consensus 39 ~~~~~~~~~a~~~~~~m~~~g~~-~-----~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 107 (260)
....+...+|.+.|+...+..-. | + ...|+.+-.++.+.|++++|+..|+...+. ||
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--------~n---- 88 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--------FN---- 88 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HH----
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------hh----
Confidence 33445555777777765433111 0 2 238889999999999999999999988752 11
Q ss_pred HHHHHHhCCCCCC-HhhH----HHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 108 CFVRMIRKGFVPD-KRTH----TILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 108 ~~~~m~~~g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
....+.|+ ...| ...=.++...|++++|+..|++..+
T Consensus 89 -----~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 -----RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -----HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11223565 3466 7777889999999999999997654
No 192
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.90 E-value=3.3 Score=37.15 Aligned_cols=129 Identities=13% Similarity=-0.013 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--HHHHh-CCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--VRMIR-KGFVPDKRTHTILVNAWCSSGKMREAQE 142 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~ 142 (260)
....++..+.+.|.+++|+++.++-. .-+..-+.+. +...+ ...-.+...|..|-..+.+.|+++.|++
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPDQD--------QKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCCHH--------HHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChHHheecCCCcc--------hheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHH
Confidence 33667777777777777776553211 1111112111 11111 1122467899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHH
Q 041786 143 FLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCN 222 (260)
Q Consensus 143 ~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~ 222 (260)
+|..+... ..+..++.. .| +..-...+.......| -++.-...|.+.|++++|.++|.+
T Consensus 703 ~y~~~~d~------~~l~~l~~~---~~---~~~~~~~~~~~a~~~~---------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHDL------ESLFLLHSS---FN---NKEGLVTLAKDAETTG---------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTCH------HHHHHHHHH---TT---CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccCh------hhhHHHHHH---cC---CHHHHHHHHHHHHHcC---------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 99987642 122222221 11 2233333333333333 234455567777888888887765
Q ss_pred H
Q 041786 223 L 223 (260)
Q Consensus 223 m 223 (260)
+
T Consensus 762 ~ 762 (814)
T 3mkq_A 762 S 762 (814)
T ss_dssp T
T ss_pred c
Confidence 4
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.84 E-value=1.6 Score=27.64 Aligned_cols=66 Identities=15% Similarity=0.035 Sum_probs=50.2
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchH
Q 041786 119 PDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN 198 (260)
Q Consensus 119 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~ 198 (260)
++...|..+-..+.+.|++++|.+.|++..+. .|+ +..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~p~---------------------~~~ 39 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA---------------------QPQ---------------------NPV 39 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---------------------CTT---------------------CHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------CCC---------------------CHH
Confidence 34566777888899999999999999987652 222 234
Q ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 199 TNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 199 t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
.|..+-.+|.+.|++++|...|++..+.
T Consensus 40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 40 GYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5666667788888999999999988764
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.07 E-value=1.7 Score=27.07 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHh-hHHHHHHHHhccCCHHHHHHHHHHH
Q 041786 70 IIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKR-THTILVNAWCSSGKMREAQEFLQEL 147 (260)
Q Consensus 70 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~m 147 (260)
....+.+.|++++|...|++..+. .| +.. .|..+-..|.+.|++++|.+.|++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~------------------------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT------------------------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH------------------------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH------------------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345677889999999999988763 24 345 7777888899999999999999987
Q ss_pred HhC
Q 041786 148 SDK 150 (260)
Q Consensus 148 ~~~ 150 (260)
.+.
T Consensus 62 l~~ 64 (99)
T 2kc7_A 62 IEL 64 (99)
T ss_dssp HHH
T ss_pred Hhc
Confidence 763
No 195
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.83 E-value=3.9 Score=28.76 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=63.3
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC--CH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG---LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP--DK 121 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p--~~ 121 (260)
.+.+-|.+-.+.|. ++..+.-.+-.++++.+ ++++++.+|++..+.. .| +.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----------------------~p~~~r 71 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----------------------SKEEQR 71 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----------------------CHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----------------------CccchH
Confidence 34445554444443 67888878888888888 6679999999877532 13 12
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041786 122 RTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKM 166 (260)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m 166 (260)
..+-.|--+|.+.|++++|.+.++...+. .|+...|..+...+
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 22333445669999999999999998864 67776666664443
No 196
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.48 E-value=2.3 Score=30.74 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=75.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 041786 72 EEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 72 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 151 (260)
....+.|+++.|.++.+++. +...|..|=....+.|+++-|+++|......+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~----------------------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~ 64 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN----------------------------DSITWERLIQEALAQGNASLAEMIYQTQHSFD 64 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC----------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH
Confidence 34567889999988876542 56788889999999999999999888665321
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcC
Q 041786 152 FNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231 (260)
Q Consensus 152 ~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 231 (260)
.. .++.. -.| |..-+..+.......| -+|.-...+.-.|+++++.++|.+ .|..|.
T Consensus 65 ------~L-~~Ly~--~tg---~~e~L~kla~iA~~~g---------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~e 120 (177)
T 3mkq_B 65 ------KL-SFLYL--VTG---DVNKLSKMQNIAQTRE---------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPL 120 (177)
T ss_dssp ------HH-HHHHH--HHT---CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHH
T ss_pred ------HH-HHHHH--HhC---CHHHHHHHHHHHHHCc---------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHH
Confidence 00 00000 000 1222222222222222 356666677778888888888744 333333
Q ss_pred CCc-----ccHHHHHHHHHHHH
Q 041786 232 PSL-----GQFDDAFCFFSEMQ 248 (260)
Q Consensus 232 ~~~-----g~~~~a~~~~~~m~ 248 (260)
... |..+.|.++.+++.
T Consensus 121 A~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 121 AYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHHhC
Confidence 322 77788888877764
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=89.39 E-value=3.7 Score=33.43 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHH
Q 041786 63 FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKRTHTILVNAWCSSGKMREAQ 141 (260)
Q Consensus 63 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 141 (260)
+...|..+-.+|.+.|++++|+..+++..+. .| +...|..+-.+|.+.|++++|.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~------------------------~p~~~~a~~~lg~~~~~~g~~~eA~ 327 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI------------------------DPSNTKALYRRAQGWQGLKEYDQAL 327 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------------------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------------------------CchhHHHHHHHHHHHHHccCHHHHH
Confidence 4678888999999999999999999988752 23 4667788888999999999999
Q ss_pred HHHHHHHh
Q 041786 142 EFLQELSD 149 (260)
Q Consensus 142 ~~~~~m~~ 149 (260)
+.|++..+
T Consensus 328 ~~l~~Al~ 335 (370)
T 1ihg_A 328 ADLKKAQE 335 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998775
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.10 E-value=0.92 Score=28.42 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=54.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchH-HHHHHHH
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVN-TNKISIP 205 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~-t~~~li~ 205 (260)
.-..+.+.|++++|.+.|++..+. .|+ +.. .|..+-.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---------------------~p~---------------------~~~~~~~~lg~ 43 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---------------------EPV---------------------GKDEAYYLMGN 43 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---------------------CSS---------------------THHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---------------------CCC---------------------cHHHHHHHHHH
Confidence 345677889999999999887652 122 233 5556667
Q ss_pred hhhhhccHHHHHHHHHHHHHCCCCcCCCc----ccHHHHHHHHHHHH
Q 041786 206 AVSKEFMIDEAFRLLCNLVEDGHKLFPSL----GQFDDAFCFFSEMQ 248 (260)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----g~~~~a~~~~~~m~ 248 (260)
.|...|++++|...|++..+.. |+... +.+.++...|++..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 44 AYRKLGDWQKALNNYQSAIELN--PDSPALQARKMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHHHHh
Confidence 7888899999999999988754 33332 66777777776554
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.06 E-value=2.2 Score=34.16 Aligned_cols=87 Identities=11% Similarity=-0.087 Sum_probs=64.4
Q ss_pred hhhhhcchHHHHHHHHhcccCCCCCCH------------------HHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcH
Q 041786 38 LNLTLISELSMWKTIELMKPDSLSVFP------------------QTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV 99 (260)
Q Consensus 38 ~~~~~~~~~~a~~~~~~m~~~g~~~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 99 (260)
.+...+....|.+.|+...+. .|+. ..|..+-.+|.+.|++++|+..|+...+..
T Consensus 188 ~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----- 260 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE----- 260 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-----
T ss_pred HHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 334444555777777765433 2332 278888899999999999999999877532
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 100 LLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 100 ~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.-+...|..+-.+|...|++++|+..|++..+
T Consensus 261 ------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 261 ------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12567788888999999999999999997764
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.99 E-value=2.5 Score=25.50 Aligned_cols=64 Identities=23% Similarity=0.144 Sum_probs=48.4
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHHH
Q 041786 121 KRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNTN 200 (260)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t~ 200 (260)
...+..+-..+.+.|++++|...|++..+. .|+ +...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------------~~~---------------------~~~~~ 46 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------DPN---------------------NAEAW 46 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTT---------------------CHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------------------CCC---------------------CHHHH
Confidence 456777788899999999999999877642 121 23445
Q ss_pred HHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 201 KISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
..+-..|.+.|++++|...|++..+.
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 47 YNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 56667788889999999999988764
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=88.15 E-value=1.6 Score=28.24 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=46.6
Q ss_pred hHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 32 ERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 32 ~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
...+-..+...+...+|.+.|+...+.. +.+...|..+-..|.+.|++++|...|++..+
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555666777779999998876543 23577889999999999999999999998775
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=87.93 E-value=8.7 Score=30.40 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC------------CCC----CcchHHHHHHHHhhhhhccHHHHHHHHH
Q 041786 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE------------LGL----CADVNTNKISIPAVSKEFMIDEAFRLLC 221 (260)
Q Consensus 158 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~------------~~~----~~~~~t~~~li~~~~~~g~~~~a~~~~~ 221 (260)
++++.+....+... -|...|+-+-..+.+.|+ ... ..+...+..+...|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 34444444444432 255666666666666665 011 2355677788888888889999999988
Q ss_pred HHHH
Q 041786 222 NLVE 225 (260)
Q Consensus 222 ~m~~ 225 (260)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8775
No 203
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.83 E-value=2.2 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=34.1
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
+....+.|+..+..+.++||.|.+++..|.++|+-.+.
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999998875
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=87.03 E-value=2.3 Score=30.17 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCC
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGL----------IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKG 116 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g 116 (260)
+|.+.++...+.. +-+...|+.+=.++.+.++ +++|+..|++..+.
T Consensus 20 eA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l----------------------- 75 (158)
T 1zu2_A 20 QIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI----------------------- 75 (158)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----------------------
Confidence 5666666654432 2256777766666666655 45888888877763
Q ss_pred CCCC-HhhHHHHHHHHhcc-----------CCHHHHHHHHHHHHh
Q 041786 117 FVPD-KRTHTILVNAWCSS-----------GKMREAQEFLQELSD 149 (260)
Q Consensus 117 ~~p~-~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~ 149 (260)
.|+ ...|..+=.+|... |++++|.+.|++..+
T Consensus 76 -dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 76 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 243 34555566666554 589999999998776
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.80 E-value=4.5 Score=25.89 Aligned_cols=70 Identities=7% Similarity=-0.060 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHhccCCHHH
Q 041786 62 VFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRK--GFVPDKRTHTILVNAWCSSGKMRE 139 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~ 139 (260)
.+...+-.|-..+.+.+++..|...|+...+. .... +-.+...++..|-.+|.+.|+++.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~------------------~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~ 64 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQ------------------LDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHTTCCCSSCHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHh------------------hhccCCCcccHHHHHHHHHHHHHHccCHHH
Confidence 46667778888999999999999999987752 1111 112456788899999999999999
Q ss_pred HHHHHHHHHh
Q 041786 140 AQEFLQELSD 149 (260)
Q Consensus 140 a~~~~~~m~~ 149 (260)
|...+++..+
T Consensus 65 A~~~~~~al~ 74 (104)
T 2v5f_A 65 ALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 206
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=86.35 E-value=14 Score=31.28 Aligned_cols=97 Identities=11% Similarity=0.012 Sum_probs=59.8
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHH------HHHHHhC------
Q 041786 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVC------FVRMIRK------ 115 (260)
Q Consensus 48 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~------~~~m~~~------ 115 (260)
+..+++..... ++.+...|-..+.-+.+.|+++.|..+|+..... +.+...|...... ++.+.+.
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 44566665442 2345677888888888999999999999999887 3333333322111 1111111
Q ss_pred ---CC---CCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041786 116 ---GF---VPDKRTHTILVNAWCSSGKMREAQEFLQEL 147 (260)
Q Consensus 116 ---g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 147 (260)
+. ......|-..++...+.+.++.|..+|+..
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 00 011245666667776778899999999887
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=85.73 E-value=12 Score=29.59 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=65.2
Q ss_pred CCCC---HhhHHHHHHHHhc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhc
Q 041786 117 FVPD---KRTHTILVNAWCS-----SGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKS 188 (260)
Q Consensus 117 ~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 188 (260)
+.|+ ...|..+-..|.+ .|+.++|.+.|++-.+- .|+.
T Consensus 192 LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---------------------nP~~------------- 237 (301)
T 3u64_A 192 LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---------------------CSAH------------- 237 (301)
T ss_dssp HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---------------------CCTT-------------
T ss_pred hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---------------------CCCC-------------
Confidence 4465 5677788888888 59999999999987762 2211
Q ss_pred CCCCCCcchHHHHHHHHhhhh-hccHHHHHHHHHHHHHCCCC--cCCCc---ccHHHHHHHHHHHH
Q 041786 189 GELGLCADVNTNKISIPAVSK-EFMIDEAFRLLCNLVEDGHK--LFPSL---GQFDDAFCFFSEMQ 248 (260)
Q Consensus 189 ~~~~~~~~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~--p~~~~---g~~~~a~~~~~~m~ 248 (260)
+..++...-..+++ .|+.+++.+.+++....... |+... +.-++|..++.+..
T Consensus 238 -------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 238 -------DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp -------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHH
T ss_pred -------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhH
Confidence 24445555566777 48999999999999988776 55444 77778877776554
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=84.79 E-value=16 Score=30.42 Aligned_cols=84 Identities=6% Similarity=0.026 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcC---ChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH--------------HHHHhCCCCCCHhhHHHHH
Q 041786 66 TLSLIIEEFGKHG---LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF--------------VRMIRKGFVPDKRTHTILV 128 (260)
Q Consensus 66 ~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--------------~~m~~~g~~p~~~~~~~li 128 (260)
.+..|-..|.+.| +.++|+..|+...+.|.. +...+..+-.++ ....+.- .-+...+..|-
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg 255 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLA 255 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 7777888888888 889999999988887733 333222222222 1111111 22333344343
Q ss_pred HH-H--hccCCHHHHHHHHHHHHhCC
Q 041786 129 NA-W--CSSGKMREAQEFLQELSDKG 151 (260)
Q Consensus 129 ~~-~--~~~g~~~~a~~~~~~m~~~~ 151 (260)
.. | ...++.++|.+.|++..+.|
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 33 2 44678888888877766543
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=84.59 E-value=9.5 Score=30.05 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=63.1
Q ss_pred HHHHHHHhcccCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCC
Q 041786 47 SMWKTIELMKPDSLSVF---PQTLSLIIEEFGK-----HGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFV 118 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~ 118 (260)
.|..+++...+. .|+ -..|..|-..|.+ .|+.++|.+.|++..+. .
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L------------------------n 234 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY------------------------C 234 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH------------------------C
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh------------------------C
Confidence 444444444333 455 4578899999999 49999999999998873 3
Q ss_pred CC--HhhHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCC--CCHH
Q 041786 119 PD--KRTHTILVNAWCSS-GKMREAQEFLQELSDKGFN--PPVR 157 (260)
Q Consensus 119 p~--~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~--~~~~ 157 (260)
|+ ..++...-..+++. |+.+.|.+.+++..+.... |+..
T Consensus 235 P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 235 SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 63 56666778888885 9999999999998887655 5543
No 210
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.16 E-value=6.6 Score=25.49 Aligned_cols=70 Identities=10% Similarity=0.069 Sum_probs=51.4
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHH-HHHHHHhCCC
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHV-CFVRMIRKGF 117 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~m~~~g~ 117 (260)
+..+-+..+....+.|++....+.+.+|.|..++..|.++|+-++.+-- +...+|..++. ..-.+.+.|+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lqElkPtl~ELGI 98 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGI 98 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHHHHhhHHHHhCC
Confidence 5555666667778899999999999999999999999999999886521 22445666663 2234444454
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.08 E-value=17 Score=32.49 Aligned_cols=47 Identities=9% Similarity=-0.098 Sum_probs=29.6
Q ss_pred hhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 40 LTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
..++....|+++.+.+ .+...|..|-..+.+.++++.|.+.|..+..
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 3344444555554333 2456777777777777777777777776654
No 212
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.64 E-value=4.8 Score=27.69 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=34.9
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 111 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
.+....+.|+..+..+.+++|-|.+++..|.++|+-.+.
T Consensus 78 ~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 78 TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999998875
No 213
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.70 E-value=10 Score=31.04 Aligned_cols=58 Identities=14% Similarity=0.030 Sum_probs=43.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 69 LIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 69 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
.++..+.+.|+.++|...+..+... -+.+...|-.+|.++.++|+..+|.+.|+...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-----------------------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-----------------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----------------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566677777777766665542 12467789999999999999999999999876
Q ss_pred h
Q 041786 149 D 149 (260)
Q Consensus 149 ~ 149 (260)
+
T Consensus 233 ~ 233 (388)
T 2ff4_A 233 T 233 (388)
T ss_dssp H
T ss_pred H
Confidence 4
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=81.51 E-value=9.5 Score=31.14 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 041786 61 SVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSGKMREA 140 (260)
Q Consensus 61 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 140 (260)
..+...|..+-..+.-.|++++|...+++.... .|+...|..+=..+.-.|++++|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L------------------------n~s~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL------------------------EMSWLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------------------------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 456778888777777779999999999988763 26776776667778889999999
Q ss_pred HHHHHHHHh
Q 041786 141 QEFLQELSD 149 (260)
Q Consensus 141 ~~~~~~m~~ 149 (260)
.+.|++...
T Consensus 330 ~e~~~~Alr 338 (372)
T 3ly7_A 330 ADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987665
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=81.02 E-value=10 Score=25.54 Aligned_cols=42 Identities=5% Similarity=-0.115 Sum_probs=26.5
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
+|.+.|+...+.| .|+.. |-..|...+.+++|.+.|++..+.
T Consensus 13 ~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~ 54 (138)
T 1klx_A 13 KAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL 54 (138)
T ss_dssp HHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC
Confidence 6777777766666 23333 555566666777787777776653
No 216
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=78.20 E-value=17 Score=26.24 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=63.6
Q ss_pred HhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHH------H
Q 041786 37 RLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCF------V 110 (260)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~------~ 110 (260)
.+.+.++....|+++.+++ -+...|..|-....+.|+++-|.+.|......+ ...-|-.+. .
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFD------KLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------HHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH------HHHHHHHHhCCHHHHH
Confidence 4566777777888888776 267899999999999999999999999877521 111111111 2
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041786 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQE 146 (260)
Q Consensus 111 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 146 (260)
.|.+ +.-...-+|.....+.-.|+++++.++|.+
T Consensus 81 kla~--iA~~~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQN--IAQTREDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHH--HHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHH--HHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2211 111222456666677778888888887754
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=77.34 E-value=15 Score=25.43 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhhhhccHHHHHHHHHHHHHCCC
Q 041786 195 ADVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGH 228 (260)
Q Consensus 195 ~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (260)
|+....-.+-.+|.+.|+..+|.+++.+..+.|+
T Consensus 123 ~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 123 VSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444444455566666677777777777777765
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.89 E-value=11 Score=23.58 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCH
Q 041786 62 VFPQTLSLIIEEFGKHGL---IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-KRTHTILVNAWCSSGKM 137 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 137 (260)
.|...+..+-.++...++ .++|..+|++..+. .|+ ......+=..+.+.|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------------------------dp~~~rA~~~lg~~~~~~g~y 59 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------------------------EPYNEAALSLIANDHFISFRF 59 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------------------------CTTCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------------------------CcCCHHHHHHHHHHHHHcCCH
Confidence 456677777766654443 68999999988763 354 45555666778899999
Q ss_pred HHHHHHHHHHHhCC
Q 041786 138 REAQEFLQELSDKG 151 (260)
Q Consensus 138 ~~a~~~~~~m~~~~ 151 (260)
++|+..|+.+.+..
T Consensus 60 ~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 60 QEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988753
No 219
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=76.39 E-value=15 Score=24.73 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=68.0
Q ss_pred hhHHHHHHHHcccchhHHHHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhh
Q 041786 17 AVNHIANIVRHDIYAERTLNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGK----HGLIDNAVEVFNKCTA 92 (260)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 92 (260)
.+.-+.+....+..... +-.++..-.....|.+.|+.-.+.| +...+..|-..|.. .++.++|...|++..+
T Consensus 14 A~~~~~~aa~~g~~~a~-lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 14 AIQYYVKACELNEMFGC-LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp HHHHHHHHHHTTCTTHH-HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHhhh-HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence 33344443434422222 4444444344446888888877765 67778888788887 7899999999998876
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCC
Q 041786 93 FNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCS----SGKMREAQEFLQELSDKG 151 (260)
Q Consensus 93 ~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 151 (260)
.| +...+..|=..|.+ .++.++|.+.|++..+.|
T Consensus 90 ~g-------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 90 LN-------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TT-------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CC-------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 43 34444555555555 677888888888776654
No 220
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.07 E-value=16 Score=27.33 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=58.6
Q ss_pred chhhhhHHHHHHHHccc--chhHHHHHhhhhhcch-HHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 041786 13 DYFAAVNHIANIVRHDI--YAERTLNRLNLTLISE-LSMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFN 88 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 88 (260)
.+..++++..+....+. .-..-+.++-+.+... .++.++|..|...|+--. +.-|-.....+-..|++.+|..+|+
T Consensus 95 ~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 95 GLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556666555443331 1123344443333221 278899999988877654 5678888899999999999999999
Q ss_pred HhhhcCCCCcH
Q 041786 89 KCTAFNCQQCV 99 (260)
Q Consensus 89 ~m~~~~~~~~~ 99 (260)
.-.+.+-+|-.
T Consensus 175 ~Gi~~~A~P~~ 185 (223)
T 4aez_C 175 KGKRMKAKPFL 185 (223)
T ss_dssp HHHHHTCBSHH
T ss_pred HHHHcCCccHH
Confidence 98887777743
No 221
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.61 E-value=30 Score=27.80 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=11.6
Q ss_pred ccHHHHHHHHHHHHh
Q 041786 235 GQFDDAFCFFSEMQI 249 (260)
Q Consensus 235 g~~~~a~~~~~~m~~ 249 (260)
++...|..+|+...+
T Consensus 201 ~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 201 ANVRAANTAYRIFTS 215 (336)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888887776654
No 222
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.11 E-value=18 Score=24.94 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=58.6
Q ss_pred chhHHHHHhhhhhcchH-----HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHH
Q 041786 30 YAERTLNRLNLTLISEL-----SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNS 104 (260)
Q Consensus 30 ~~~~~~~~~~~~~~~~~-----~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 104 (260)
++...+...+....+.. +..+-+..+....+.|+.....+-+.+|-+..++..|.++|+-.+.+- .+...+|..
T Consensus 49 Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y 127 (152)
T 2y69_E 49 ETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPY 127 (152)
T ss_dssp CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHH
T ss_pred CcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHH
Confidence 44445554444443222 455555666677889999999999999999999999999999988652 122446666
Q ss_pred HHH-HHHHHHhCCC
Q 041786 105 LHV-CFVRMIRKGF 117 (260)
Q Consensus 105 li~-~~~~m~~~g~ 117 (260)
++. ..-.+.+.||
T Consensus 128 ~lqElkPtl~ELGI 141 (152)
T 2y69_E 128 VIQELRPTLNELGI 141 (152)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHhCC
Confidence 663 2234444454
No 223
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.75 E-value=28 Score=26.15 Aligned_cols=91 Identities=9% Similarity=-0.041 Sum_probs=45.2
Q ss_pred HHHHhcccCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCcH---HHHHHHH--------HHHHHHHhC
Q 041786 50 KTIELMKPDSLSVFPQ---TLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQCV---LLYNSLH--------VCFVRMIRK 115 (260)
Q Consensus 50 ~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li--------~~~~~m~~~ 115 (260)
++++.+.+.|..++.. .-.+.++..++.|+.+-+..++ +.|..++. .-.+.+. .+.+.+.+.
T Consensus 19 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL----RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 4555555666555432 1234566666777776554444 34443321 1122222 222667777
Q ss_pred CCCCCHh---hHHHHHHHHhccCCHHHHHHHHH
Q 041786 116 GFVPDKR---THTILVNAWCSSGKMREAQEFLQ 145 (260)
Q Consensus 116 g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~ 145 (260)
|..++.. -++. +...++.|+.+-+..+++
T Consensus 95 g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 95 GADVNECDFYGFTA-FMEAAVYGKVKALKFLYK 126 (285)
T ss_dssp TCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHH
T ss_pred CCCCCccCcccCCH-HHHHHHhCCHHHHHHHHH
Confidence 7766543 2333 344456677665544443
No 224
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=72.32 E-value=22 Score=29.08 Aligned_cols=57 Identities=5% Similarity=0.060 Sum_probs=42.2
Q ss_pred HHHhhhhhcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 35 LNRLNLTLISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 35 ~~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
+.......+...++...+..+.... +.+...|-.+|.++.+.|+..+|++.|+...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445555557776666664331 34777999999999999999999999999875
No 225
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=71.92 E-value=45 Score=28.21 Aligned_cols=30 Identities=7% Similarity=-0.198 Sum_probs=22.9
Q ss_pred chHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 196 DVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 196 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
....|...+.-=...|+.+.+..++++...
T Consensus 383 ~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677777766777999999998888764
No 226
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.81 E-value=24 Score=25.04 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=58.1
Q ss_pred chhhhhHHHHHHHHccc--chhHHHHHhhhhhcch-HHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 041786 13 DYFAAVNHIANIVRHDI--YAERTLNRLNLTLISE-LSMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFN 88 (260)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 88 (260)
....++++..+....+. .-..-+.++-+.+... .++.++|..|...|+-.. +.-|-.....+-..|++.+|.++|+
T Consensus 41 ~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 41 NMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555555443332 1123333333332221 268899999988877655 5677888888999999999999999
Q ss_pred HhhhcCCCCcHH
Q 041786 89 KCTAFNCQQCVL 100 (260)
Q Consensus 89 ~m~~~~~~~~~~ 100 (260)
.-.+.+-+|-..
T Consensus 121 ~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 121 EGIQQKAEPLER 132 (164)
T ss_dssp HHHHTTCBSHHH
T ss_pred HHHHcCCCcHHH
Confidence 988887777543
No 227
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.04 E-value=24 Score=24.69 Aligned_cols=85 Identities=7% Similarity=0.099 Sum_probs=56.4
Q ss_pred hhhhhHHHHHHHHccc--chhHHHHHhhhhhcchH-HHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 041786 14 YFAAVNHIANIVRHDI--YAERTLNRLNLTLISEL-SMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEVFNK 89 (260)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~ 89 (260)
...++++..+....+. .-..-+.++-+.+.... ++.++|..|...|+-.. +.-|-.....+-..|++.+|.++|+.
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 126 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQR 126 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555444443321 11233444433322221 68999999988877654 66788888999999999999999999
Q ss_pred hhhcCCCCc
Q 041786 90 CTAFNCQQC 98 (260)
Q Consensus 90 m~~~~~~~~ 98 (260)
-.+.+-+|-
T Consensus 127 Gi~~~A~P~ 135 (152)
T 4a1g_A 127 GIQNQAEPR 135 (152)
T ss_dssp HHHTTCBSH
T ss_pred HHHcCCccH
Confidence 888777764
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=69.75 E-value=25 Score=24.41 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 041786 117 FVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFN 153 (260)
Q Consensus 117 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 153 (260)
.+|+....-.+-.||.+.|+..+|.+++.+.-++|++
T Consensus 121 ~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 121 NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4577788888999999999999999999999888763
No 229
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=69.53 E-value=30 Score=25.18 Aligned_cols=40 Identities=10% Similarity=-0.033 Sum_probs=20.6
Q ss_pred HHHHhcccCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHH
Q 041786 50 KTIELMKPDSLSVFPQ--TLSLIIEEFGKHGLIDNAVEVFNK 89 (260)
Q Consensus 50 ~~~~~m~~~g~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~ 89 (260)
++++.+.+.|..++.. ...+.++..++.|+.+-+..+++.
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 3444454555544322 122456666777777655555543
No 230
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=69.52 E-value=39 Score=26.58 Aligned_cols=101 Identities=12% Similarity=-0.001 Sum_probs=66.7
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHhhhcCCCCcHHHHHHHHHHH----------H
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGL------IDNAVEVFNKCTAFNCQQCVLLYNSLHVCF----------V 110 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----------~ 110 (260)
++++.++.+.+... -|-..|+.--..+.+.+. ++++++.+++..... +-|...|+-+-... .
T Consensus 164 ~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 164 KELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHH
Confidence 67777777765542 366777766666666665 788888888877654 23556665554333 1
Q ss_pred HHHhC----C--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 041786 111 RMIRK----G--FVPDKRTHTILVNAWCSSGKMREAQEFLQELSD 149 (260)
Q Consensus 111 ~m~~~----g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 149 (260)
..... + -..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 11111 1 123567788888899999999999999998774
No 231
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=68.95 E-value=46 Score=27.14 Aligned_cols=121 Identities=11% Similarity=-0.053 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHh--cC---ChHHHHHHHHHhhhcCCCCc-HHHHHHHHHHHH------------------HHHh--
Q 041786 61 SVFPQTLSLIIEEFGK--HG---LIDNAVEVFNKCTAFNCQQC-VLLYNSLHVCFV------------------RMIR-- 114 (260)
Q Consensus 61 ~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~------------------~m~~-- 114 (260)
+.+...|...+.+... .+ ...+|+.+|++..+.. |+ ...|..+-.|+- .+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3456667776655432 22 3577888888887653 54 234444333330 1111
Q ss_pred --CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCC
Q 041786 115 --KGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELG 192 (260)
Q Consensus 115 --~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 192 (260)
..-..+..+|.++-..+...|++++|.+.+++.... .
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---------------------n-------------------- 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---------------------E-------------------- 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------C--------------------
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---------------------C--------------------
Confidence 122445667766666666668888888888876652 1
Q ss_pred CCcchHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 193 LCADVNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 193 ~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
|+...|..+-..+.-.|+.++|...|++....
T Consensus 308 --~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 308 --MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33334444445667778888888888777654
No 232
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.34 E-value=26 Score=25.63 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=7.9
Q ss_pred HhccCCHHHHHHHHHH
Q 041786 131 WCSSGKMREAQEFLQE 146 (260)
Q Consensus 131 ~~~~g~~~~a~~~~~~ 146 (260)
.+..|+.+-+..+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555555544443
No 233
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.11 E-value=28 Score=20.94 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=36.9
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSG-KMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
+.+.|+..+..- -.++..+...+ ..-.+.++++.+.+.+...+...+.+.++.+.+.|+
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 455676666544 34556666554 455677788888776655556666666666666664
No 234
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=53.32 E-value=49 Score=22.29 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=35.9
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSG-KMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+...+.+.++.+.+.|+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4556666655433 3455555555 566788888888876655555566666666665554
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=49.73 E-value=67 Score=22.81 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=42.4
Q ss_pred cCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-------HhhHHHH
Q 041786 57 PDSLSVFPQTLSLI--IEEFGKHGLIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPD-------KRTHTIL 127 (260)
Q Consensus 57 ~~g~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~-------~~~~~~l 127 (260)
..|+.|.-..|+.+ +..+...+.++.|+-+.+.+.. +.+. .|+ ..++..+
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlS-------------------l~~~--~~~~~sp~~~~~~l~~l 69 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLT-------------------LSNN--NPELFSPPQKYQLLVYH 69 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HHHH--STTSSCHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------------------hhcC--CcccccHHHHHHHHHHH
Confidence 45666766655544 6777788888888877776553 1111 122 1255667
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 041786 128 VNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 128 i~~~~~~g~~~~a~~~~~~m~ 148 (260)
-+++...+++..|...|++..
T Consensus 70 adalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 70 ADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 789999999999999999754
No 236
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=49.48 E-value=47 Score=22.71 Aligned_cols=58 Identities=9% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+...+.+.++.+.+.|+
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 445666665542 23344444445 55788888888776655555556666666655554
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=49.33 E-value=2.7 Score=35.99 Aligned_cols=31 Identities=16% Similarity=-0.144 Sum_probs=19.3
Q ss_pred CcchHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 041786 194 CADVNTNKISIPAVSKEFMIDEAFRLLCNLV 224 (260)
Q Consensus 194 ~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 224 (260)
.-++.||.-+-.+|...+.+..|...--.+.
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 3456677777777777777766655544443
No 238
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=48.53 E-value=32 Score=23.40 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=28.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 126 ILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 126 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
.++..+...+..-.|.++++.+.+.+...+...+.+.++.+.+.|+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 4556666665666677777777766555555555555666555554
No 239
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=48.42 E-value=74 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=9.9
Q ss_pred hhhhhccHHHHHHHHHHHHHCCCCcC
Q 041786 206 AVSKEFMIDEAFRLLCNLVEDGHKLF 231 (260)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~p~ 231 (260)
..++.|+.+-+ +.+.+.|..++
T Consensus 178 ~A~~~~~~~~v----~~Ll~~ga~~~ 199 (231)
T 3aji_A 178 LACDEERVEEA----KFLVTQGASIY 199 (231)
T ss_dssp HHHHTTCHHHH----HHHHHTTCCSC
T ss_pred HHHHCCCHHHH----HHHHHCCCCCC
Confidence 33445554433 33344555544
No 240
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.90 E-value=32 Score=23.05 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
++..+...+..-.|.++++.+++.+...+...+.+.++.+.+.|+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555555556677777777665544445555555555555553
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=46.68 E-value=96 Score=28.01 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=27.5
Q ss_pred CCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 041786 117 FVPD-KRTHTILVNAWCSSGKMREAQEFLQELS 148 (260)
Q Consensus 117 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 148 (260)
+.|+ =.+|-.|...|.+.|+++.|+-.++.+-
T Consensus 366 ~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 366 LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4566 5799999999999999999999988773
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.07 E-value=1.3e+02 Score=25.03 Aligned_cols=133 Identities=24% Similarity=0.203 Sum_probs=76.4
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCC
Q 041786 116 GFVPDKRTHTILVNAWCSSGKMREAQEFLQELSD-KGFNPPVR-SAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGL 193 (260)
Q Consensus 116 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~-~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 193 (260)
....+......++..|.+.|+++...+.+.-+.+ +|..+... +..+.+-.....-..++..+...++..+...-...+
T Consensus 51 d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 51 DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKI 130 (445)
T ss_dssp STTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCC
T ss_pred chhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccch
Confidence 3445667788899999999999998887776544 23222111 111111111111112345566666665443333222
Q ss_pred Cc---chHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCc----------------ccHHHHHHHHHHHH
Q 041786 194 CA---DVNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSL----------------GQFDDAFCFFSEMQ 248 (260)
Q Consensus 194 ~~---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----------------g~~~~a~~~~~~m~ 248 (260)
-. .......|...|-..|++.+|..++.++...-...+... +++..|..++....
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22 234456778889999999999999999874322222221 77777776666553
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=46.05 E-value=83 Score=28.41 Aligned_cols=27 Identities=7% Similarity=-0.080 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHH
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNL 223 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m 223 (260)
-.+|-.|...|.+.|+++.|.-.++.+
T Consensus 371 F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 371 FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 567888888888888999998888776
No 244
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.91 E-value=87 Score=23.02 Aligned_cols=102 Identities=10% Similarity=0.021 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHccc--chhHHHHHhhhhhcch------HHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 041786 16 AAVNHIANIVRHDI--YAERTLNRLNLTLISE------LSMWKTIELMKPDSLSVF-PQTLSLIIEEFGKHGLIDNAVEV 86 (260)
Q Consensus 16 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~ 86 (260)
.++++..+....+. .-..-+.++-+.+... .++.++|..|...|+--. +.-|-.....+...|++.+|.++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555555444332 1234444444433332 388999999988877544 66788888999999999999999
Q ss_pred HHHhhhcCCCCcHHHHHHHHHHHHHHHhCCC
Q 041786 87 FNKCTAFNCQQCVLLYNSLHVCFVRMIRKGF 117 (260)
Q Consensus 87 ~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~ 117 (260)
|+.-.+.+-+|-...-...-.....|.+.++
T Consensus 138 y~~GI~~~A~P~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 138 LELGAENNCRPYNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHHHHTTCBSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCccHHHHHHHHHHHHHHHHhcCC
Confidence 9998887777744333333222345555555
No 245
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=45.51 E-value=76 Score=22.23 Aligned_cols=45 Identities=11% Similarity=-0.004 Sum_probs=34.9
Q ss_pred HHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcC-----------ChHHHHHHHHHhhhc
Q 041786 47 SMWKTIELMKPDSLSV-FPQTLSLIIEEFGKHG-----------LIDNAVEVFNKCTAF 93 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~ 93 (260)
+|...|++..+.. | +...|..+=.+|...| ++++|++.|++..+.
T Consensus 64 eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 64 EAITKFEEALLID--PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 7888887766553 4 4678888888888764 899999999988863
No 246
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=42.45 E-value=65 Score=20.58 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=38.4
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh-----hcCCCCcHHHHHHH
Q 041786 47 SMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCT-----AFNCQQCVLLYNSL 105 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~~~l 105 (260)
.+.++.+++...|+.|+..+..-++..|...+- + +.++.++-. ..|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 678888889889999999999999988888774 2 444333322 22445544444433
No 247
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=41.95 E-value=60 Score=20.05 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHHHHHCCCC
Q 041786 197 VNTNKISIPAVSKEFMIDEAFRLLCNLVEDGHK 229 (260)
Q Consensus 197 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 229 (260)
+.....+-..+.+.|++++|...|+.+.+..-.
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 444555567788899999999999999876533
No 248
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.04 E-value=55 Score=22.92 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHCCC
Q 041786 111 RMIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDK--GFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 111 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~a~~l~~~m~~~g~ 171 (260)
.+.+.|++++.. =-.++..+...+..-.|.++++.+.+. +...+...+.+.++.+.+.|+
T Consensus 23 ~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 23 ILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344567766543 245667777777777888888888876 555556666666666666664
No 249
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.96 E-value=51 Score=22.52 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=36.7
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+...+.+.++.+.+.|+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455665554332 3444555555566788888888776655666666666666666664
No 250
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.90 E-value=17 Score=27.98 Aligned_cols=38 Identities=0% Similarity=-0.243 Sum_probs=18.2
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 041786 51 TIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFN 88 (260)
Q Consensus 51 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 88 (260)
+++.+.+.|..++...-.+.++..++.|+.+-+..+++
T Consensus 46 ~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 46 LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 44444444544443323344555556666555444443
No 251
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.49 E-value=47 Score=22.90 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGS 171 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~ 171 (260)
+.+.|++++..= -.++..+...+..-.|.++++.+.+.+...+...+.+.++.+.+.|+
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 445565554332 23455555555666788888887766555555566666666666554
No 252
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.99 E-value=50 Score=22.74 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCC
Q 041786 112 MIRKGFVPDKRTHTILVNAWCSSG-KMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSV 172 (260)
Q Consensus 112 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~ 172 (260)
+.+.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+...+.+.++.+.+.|+.
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4556666665433 3455555555 5667888888888776666666777777777776653
No 253
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=36.80 E-value=1.1e+02 Score=21.36 Aligned_cols=46 Identities=9% Similarity=-0.070 Sum_probs=35.8
Q ss_pred HHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 47 SMWKTIELMKPDSLSV--FPQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 47 ~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
++..+|++..+.. .| +...+-.|--+|.+.|++++|++.++.+.+.
T Consensus 53 ~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 53 KGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 8999999887654 24 3444555667789999999999999999874
No 254
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=35.96 E-value=60 Score=19.25 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhcCCC
Q 041786 211 FMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIKTHP 253 (260)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~g~~ 253 (260)
+..+.|.++..++...|..+.... .+.++|..+..++...|+.
T Consensus 18 ~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 18 KVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 356788999999988886543221 5678999999999988873
No 255
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.76 E-value=1.3e+02 Score=22.17 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHH-HHHHhcCC
Q 041786 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFF-SEMQIKTH 252 (260)
Q Consensus 199 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~-~~m~~~g~ 252 (260)
-|...-..+-..|++.+|..+|+.=.+.+-+|- .++.++..-| .+|...++
T Consensus 117 fYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~---~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 117 FYEEFSKLLENAQFFLEAKVLLELGAENNCRPY---NRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH---HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH---HHHHHHHHHHHHHHHhcCC
Confidence 344444555556666666666665555555443 3333333333 34444444
No 256
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.30 E-value=37 Score=23.72 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhcCCCC
Q 041786 215 EAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIKTHPP 254 (260)
Q Consensus 215 ~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~g~~p 254 (260)
++..+|..|..+|+.-.... |++++|..+|+.-.+++-+|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36777777777776555544 77777777777666665555
No 257
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=35.00 E-value=67 Score=25.54 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCCChhchHHHHHHHHh
Q 041786 159 AKQMVNKMIKQGSVPDLETFNSLIETICK 187 (260)
Q Consensus 159 a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 187 (260)
+..++....+-.+.+...-|..+++...+
T Consensus 298 ~~~l~~~a~~l~~~~~~k~~~~~~~~~~~ 326 (334)
T 2qq8_A 298 AEELFASIATIQMQSRNKKWAQVLTALQK 326 (334)
T ss_dssp HHHHHHHHHHCCCEETTEEHHHHHHHHHC
T ss_pred HHHHHHHHHHccCcHHHhhHHHHHHHHHH
Confidence 44555555555555555566666665543
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=34.69 E-value=1.2e+02 Score=21.34 Aligned_cols=52 Identities=4% Similarity=-0.018 Sum_probs=33.7
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 041786 45 ELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTAFNCQQ 97 (260)
Q Consensus 45 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 97 (260)
..+|.++|..+.+..-+. ...|-...+.=.+.|++..|++++......+-+|
T Consensus 76 ~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 76 PDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp GGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 336677776664443333 6667666677777788888888887777655443
No 259
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.62 E-value=86 Score=19.72 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=31.0
Q ss_pred HHHcccchhHHHHHhhhh-h-cchHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041786 24 IVRHDIYAERTLNRLNLT-L-ISELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAV 84 (260)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~-~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 84 (260)
++.++.........+... . .....|.++++.+..+| | ..|..++.++...+..+.|.
T Consensus 30 L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG--~--~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 30 LLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRG--S--QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSC--T--THHHHHHHHHHTTTCHHHHH
T ss_pred HHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcC--h--HHHHHHHHHHHHcCcHHHHH
Confidence 333444444444333332 1 34457777777777665 2 34777777776656555553
No 260
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=34.40 E-value=84 Score=19.54 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=59.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCCCCCCcchHH
Q 041786 120 DKRTHTILVNAWCSSGKMREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGELGLCADVNT 199 (260)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~~t 199 (260)
+...+-.|=..+.+.|+++.|..-|+...+. . ... ++ .-......
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~------------~----~~~--~~-----------------~~~~~~~i 48 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQ------------L----DEG--EI-----------------STIDKVSV 48 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------H----HTT--CC-----------------CSSCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHh------------h----hcc--CC-----------------CcccHHHH
Confidence 4455566777888999999999888865531 0 000 00 01244567
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhc
Q 041786 200 NKISIPAVSKEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIK 250 (260)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~ 250 (260)
+..|-.+|.+.|+++.|...+++..+. .|+... ...-..+++.+...
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~--~~~n~~~~~~~~~~ 95 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR--ANGNLKYFEYIMAK 95 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH--HHhhHHHHHHHHHh
Confidence 788888999999999999999998764 344322 22223466666544
No 261
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=32.72 E-value=1.1e+02 Score=20.46 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhcCChHH---HHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCC-CHh-hHHHHHHHHhccCC
Q 041786 62 VFPQTLSLIIEEFGKHGLIDN---AVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVP-DKR-THTILVNAWCSSGK 136 (260)
Q Consensus 62 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p-~~~-~~~~li~~~~~~g~ 136 (260)
++..+--.+..++++.....+ ++.+++++.+.+ .| +.. ..-.|--++.|.|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-----------------------~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-----------------------SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-----------------------CHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----------------------CcchHHHHHHHHHHHHHHhhh
Confidence 666666667777777776665 778888766421 12 222 22235567889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041786 137 MREAQEFLQELSDKGFNPPVRSAKQMVNKM 166 (260)
Q Consensus 137 ~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m 166 (260)
+++|.+.++.+.+. .|+...|..+-..+
T Consensus 90 Y~~A~~~~~~lL~~--eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 90 YEKALKYVRGLLQT--EPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999988863 56666666655444
No 262
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=32.15 E-value=90 Score=19.20 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=43.7
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHhhhc-CCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 041786 68 SLIIEEFGKHG-LIDNAVEVFNKCTAF-NCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS 134 (260)
Q Consensus 68 ~~li~~~~~~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~ 134 (260)
|.++.-+...| ++......|..+... .+-.+...++.|+..+-.|...|+..+...-+.|=.++.+.
T Consensus 8 n~IVqQlv~aGadLa~~rtmlrn~m~g~~valsr~eq~Il~qHFPnM~~~gI~~~seLA~elR~aLrra 76 (94)
T 3tjy_A 8 NRIVQQLVEAGADLANIRTMFRNMLRGEEMILSRAEQNVFLQHFPDMLPCGIDRNSELAIALREALRRA 76 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHCTTHHHHCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHcCCchhhhHHHHHHHHHHCcccccccCCCccHHHHHHHHHHHHH
Confidence 55666666655 566666666665543 45567777777777777777778877777766665555443
No 263
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=31.31 E-value=51 Score=27.90 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=35.2
Q ss_pred hhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~g~~p~~~t 258 (260)
...++++|....++.++.+-.... |-.-.|..+|.++.++|+.||..|
T Consensus 210 ~~~~ldeal~~~~~a~~~~~~~SI--g~~GNaadv~~~l~~~~i~~Dlvt 257 (551)
T 1x87_A 210 MTDSLDAALEMAKQAKEEKKALSI--GLVGNAAEVLPRLVETGFVPDVLT 257 (551)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEE--EEESCHHHHHHHHHHTTCCCSEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCceEE--EEeccHHHHHHHHHHCCCCCCCCC
Confidence 457888999988888877643222 334445888999999999998754
No 264
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=31.28 E-value=50 Score=28.00 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=34.8
Q ss_pred hhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~g~~p~~~t 258 (260)
...++++|....++.++.+-.... |-.-.|..+|.++.++|+.||..|
T Consensus 215 ~~~~ldeal~~~~~a~~~~~~~SI--g~~GNaadv~~~l~~~~i~~Dlvt 262 (557)
T 1uwk_A 215 QATDLDDALVRIAKYTAEGKAISI--ALHGNAAEILPELVKRGVRPDMVT 262 (557)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEE--EEESCHHHHHHHHHHHTCCCSEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCceEE--EEeccHHHHHHHHHHCCCCCCCCC
Confidence 457888899888888877643322 334445788999999999998754
No 265
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.25 E-value=55 Score=23.17 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhcCCCC
Q 041786 216 AFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIKTHPP 254 (260)
Q Consensus 216 a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~g~~p 254 (260)
+..+|..|..+|+.-.... |++.+|.++|+.-..++-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555555554443333 55555555555544444443
No 266
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=30.99 E-value=2.1e+02 Score=23.00 Aligned_cols=176 Identities=10% Similarity=-0.013 Sum_probs=88.7
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHH-----------
Q 041786 45 ELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKH-G-LIDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVR----------- 111 (260)
Q Consensus 45 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----------- 111 (260)
..++++.++.+..... -+...|+.--..+.+. + ++++++++++.+.+.. +.+...|+-.-.+...
T Consensus 105 l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 3367777777655432 2456666555555554 5 6778888888777643 2344555443322211
Q ss_pred ----------HHhCCCCCCHhhHHHHHHHHhccCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCC
Q 041786 112 ----------MIRKGFVPDKRTHTILVNAWCSSGK-------MREAQEFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPD 174 (260)
Q Consensus 112 ----------m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~ 174 (260)
+.+.. .-|-..|+-.-..+.+.+. ++++++.+.+.... .|+...+...+..+...+-.+-
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCc
Confidence 11111 1234444444444444443 45555555554432 3444455555444443322210
Q ss_pred h------------h---chHHHHHHHHhcCCC-----CCCcchHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 041786 175 L------------E---TFNSLIETICKSGEL-----GLCADVNTNKISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 175 ~------------~---~~~~li~~~~~~~~~-----~~~~~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
. . .+..+..-+...-.. .-.+.......|...|...|+.++|.++++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0 0 001111111111001 1135667788888999999999999999998864
No 267
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=30.97 E-value=91 Score=18.90 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHhhhc-CCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 041786 68 SLIIEEFGKHG-LIDNAVEVFNKCTAF-NCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAW 131 (260)
Q Consensus 68 ~~li~~~~~~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~ 131 (260)
|.++.-+...| ++......|..+... .+-.+...++.|+..+-.|...|+..++..-+.|=.++
T Consensus 10 n~IVqQLv~AGADLA~vrtmlrnvm~g~~valsr~e~~il~qHFPnm~~~Gi~~~S~LA~~lR~al 75 (85)
T 3hgl_A 10 NSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGAL 75 (85)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHCTTHHHHCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCchHhhhHHHHHHHHHHChhhhhccCCCCCHHHHHHHHHH
Confidence 55555555554 566666777665543 45567777777777677777778777776666654444
No 268
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=30.88 E-value=35 Score=18.70 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHHHHCCCCcCCCc
Q 041786 211 FMIDEAFRLLCNLVEDGHKLFPSL 234 (260)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~p~~~~ 234 (260)
.++..|.++++.+++.|-.|....
T Consensus 7 RDv~RaiELle~lq~sgevp~~KL 30 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAKL 30 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHH
Confidence 466778888888888877776655
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.24 E-value=2.6e+02 Score=26.57 Aligned_cols=99 Identities=9% Similarity=-0.022 Sum_probs=53.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHCCCCC--ChhchHHHHHHHHhcCC------------
Q 041786 127 LVNAWCSSGKMREAQEFLQELSDKGFNPPVR--SAKQMVNKMIKQGSVP--DLETFNSLIETICKSGE------------ 190 (260)
Q Consensus 127 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~a~~l~~~m~~~g~~p--~~~~~~~li~~~~~~~~------------ 190 (260)
+=.+|..+|++++|.++|.+... |+..+.. ....-+..+....... -..=|..++..+-+.+.
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi 926 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34457789999999999986432 2211100 0000111111111111 11224555555555554
Q ss_pred --C-CCCcc--hHHHHHHHHhhhhhccHHHHHHHHHHHHHC
Q 041786 191 --L-GLCAD--VNTNKISIPAVSKEFMIDEAFRLLCNLVED 226 (260)
Q Consensus 191 --~-~~~~~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (260)
. .-.++ ...|..+++++...|++++|...+-.+.+.
T Consensus 927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 1 11222 236888999999999999998888666544
No 270
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=30.15 E-value=52 Score=27.88 Aligned_cols=48 Identities=15% Similarity=0.013 Sum_probs=34.9
Q ss_pred hhccHHHHHHHHHHHHHCCCCcCCCcccHHHHHHHHHHHHhcCCCCCCCC
Q 041786 209 KEFMIDEAFRLLCNLVEDGHKLFPSLGQFDDAFCFFSEMQIKTHPPNRPV 258 (260)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~p~~~~g~~~~a~~~~~~m~~~g~~p~~~t 258 (260)
...++++|....++.++.+-.... |-.-.|..+|.++.++|+.||..|
T Consensus 211 ~~~~ldeal~~~~~a~~~~~~~SI--g~~GNaadv~~~l~~~~i~~Dlvt 258 (552)
T 2fkn_A 211 KTASIEEALAWAEEAKLAGKPLSI--ALLGNAAEVHHTLLNRGVKIDIVT 258 (552)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEE--EEESCHHHHHHHHHTTTCCCSEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCceEE--EEeccHHHHHHHHHHCCCCCCCCC
Confidence 457888898888888877643222 334445888999999999998754
No 271
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=29.95 E-value=84 Score=18.78 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHHHCCCCcCCCc------------ccHHHHHHHHHHHHhcCCCCCC
Q 041786 211 FMIDEAFRLLCNLVEDGHKLFPSL------------GQFDDAFCFFSEMQIKTHPPNR 256 (260)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~p~~~~------------g~~~~a~~~~~~m~~~g~~p~~ 256 (260)
.+.+.|.++..++...|+.+.... .+.++|.....++...|+.+-.
T Consensus 18 ~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~i 75 (81)
T 1uta_A 18 RGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCI 75 (81)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCB
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEE
Confidence 356778899999988887543221 5668999999999988876543
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.31 E-value=1.2e+02 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCTAF 93 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 93 (260)
..++..+-..|.+.|+++.|.+.|.+++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~ 160 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSK 160 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346778889999999999999999999864
No 273
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=28.52 E-value=55 Score=16.06 Aligned_cols=24 Identities=17% Similarity=-0.126 Sum_probs=19.3
Q ss_pred HHHHhhhhhccHHHHHHHHHHHHH
Q 041786 202 ISIPAVSKEFMIDEAFRLLCNLVE 225 (260)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~ 225 (260)
-.+.-|.+.|+.++|..+-.+|+.
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 356788899999999999777763
No 274
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=28.15 E-value=40 Score=28.59 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHCCCCCChhc
Q 041786 134 SGKMREAQEFLQELSDKGFNPPVR---SAKQMVNKMIKQGSVPDLET 177 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~~~~~~~---~a~~l~~~m~~~g~~p~~~~ 177 (260)
..++|+|++..++-++.+...++. .+-++|.++.++|+.||..|
T Consensus 216 ~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~Dlvt 262 (557)
T 1uwk_A 216 ATDLDDALVRIAKYTAEGKAISIALHGNAAEILPELVKRGVRPDMVT 262 (557)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHHTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCC
Confidence 467889998888888776544433 67888888888888887654
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=27.99 E-value=2.2e+02 Score=22.42 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh----cCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 041786 66 TLSLIIEEFGKHGLIDNAVEVFNKCTA----FNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSS 134 (260)
Q Consensus 66 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~ 134 (260)
.|-++...|.+.+++++|++++..--. .|- ....-...+...+-..+.+++++.....-++..+...
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q--~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAKQ--GGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCC--cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 466778888888889998887654332 111 1111111111123444556666665555555555443
No 276
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=27.79 E-value=2.9e+02 Score=23.71 Aligned_cols=118 Identities=8% Similarity=-0.082 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHHHcccchhHHHHHhhhhhcc----------hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC--C
Q 041786 12 EDYFAAVNHIANIVRHDIYAERTLNRLNLTLIS----------ELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKHG--L 79 (260)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~ 79 (260)
++.....+++..........-..-..+....+. ..++++.++.+.+...+ +...|+.=--.+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Q ss_pred hHHHHHHHHHhhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCC
Q 041786 80 IDNAVEVFNKCTAFNCQQCVLLYNSLHVCFVRMIRKGFVPDKRTHTILVNAWCSSG-KMREAQEFLQELSDKGFN 153 (260)
Q Consensus 80 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~ 153 (260)
++++++.++++.+...+ |-..|+---..+.+.| ..+++.+.++++.+.+..
T Consensus 125 ~~~el~~~~k~l~~d~~-----------------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 125 WARELELCARFLEADER-----------------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-----------------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred HHHHHHHHHHHHhhccc-----------------------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
No 277
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.39 E-value=72 Score=21.14 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=33.3
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 041786 48 MWKTIELMKPDSLSVFPQTLSLIIEEFGKHGLIDNAVEVFNKCTA 92 (260)
Q Consensus 48 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 92 (260)
-.-+|+.+.+..+.|++..--.-|......+++..|.++.-.+..
T Consensus 45 L~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 45 LALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344677777777766655555556677788999999999988775
No 278
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=26.95 E-value=41 Score=28.49 Aligned_cols=44 Identities=18% Similarity=0.368 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHCCCCCChhc
Q 041786 134 SGKMREAQEFLQELSDKGFNPPVR---SAKQMVNKMIKQGSVPDLET 177 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~~~~~~~---~a~~l~~~m~~~g~~p~~~~ 177 (260)
..++|+|++..++-++.+...++. .+-++|.++.++|+.||..|
T Consensus 211 ~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~Dlvt 257 (551)
T 1x87_A 211 TDSLDAALEMAKQAKEEKKALSIGLVGNAAEVLPRLVETGFVPDVLT 257 (551)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHTTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCC
Confidence 468899998888887776543333 67888899999998887654
No 279
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.05 E-value=25 Score=20.11 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=22.0
Q ss_pred HHHHHHHhccc-CCCCCCHHHHHHHHHHH-HhcC
Q 041786 47 SMWKTIELMKP-DSLSVFPQTLSLIIEEF-GKHG 78 (260)
Q Consensus 47 ~a~~~~~~m~~-~g~~~~~~~~~~li~~~-~~~~ 78 (260)
+|.+.|.+|.+ .++. +..+|...|..+ ++..
T Consensus 4 Eae~aF~~lL~~~~V~-s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 4 EAEKEFITMLKENQVD-STWSFSRIISELGTRDP 36 (59)
T ss_dssp HHHHHHHHHHHHTTCC-SSCCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCC-CCCcHHHHHHHhccCCC
Confidence 67888888754 4554 556899888888 5554
No 280
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=25.85 E-value=1e+02 Score=20.76 Aligned_cols=14 Identities=0% Similarity=-0.204 Sum_probs=6.4
Q ss_pred HHHHHHhcCChHHH
Q 041786 70 IIEEFGKHGLIDNA 83 (260)
Q Consensus 70 li~~~~~~~~~~~a 83 (260)
.++..+..|+.+-+
T Consensus 45 ~L~~A~~~~~~~~v 58 (165)
T 3twr_A 45 PLHFAAGYNRVSVV 58 (165)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHcChHHHH
Confidence 34444455554433
No 281
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=25.82 E-value=93 Score=22.20 Aligned_cols=38 Identities=5% Similarity=-0.197 Sum_probs=18.4
Q ss_pred HHHhcccCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHH
Q 041786 51 TIELMKPDSLSVFPQT--LSLIIEEFGKHGLIDNAVEVFN 88 (260)
Q Consensus 51 ~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~ 88 (260)
+++.+.+.|..++... ..+.++..++.|+.+-+..+++
T Consensus 40 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 40 AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4444445555444321 1234455556676665555544
No 282
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=25.51 E-value=41 Score=28.47 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHCCCCCChhc
Q 041786 134 SGKMREAQEFLQELSDKGFNPPVR---SAKQMVNKMIKQGSVPDLET 177 (260)
Q Consensus 134 ~g~~~~a~~~~~~m~~~~~~~~~~---~a~~l~~~m~~~g~~p~~~~ 177 (260)
..++|+|++..++-++.+...++. .+-++|.++.++|+.||..|
T Consensus 212 ~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~Dlvt 258 (552)
T 2fkn_A 212 TASIEEALAWAEEAKLAGKPLSIALLGNAAEVHHTLLNRGVKIDIVT 258 (552)
T ss_dssp ESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHTTTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCC
Confidence 467888888888887766543332 67788888888888887643
No 283
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=25.33 E-value=2.8e+02 Score=22.70 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=31.3
Q ss_pred chHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHhh
Q 041786 44 SELSMWKTIELMKPDSLSVFPQTLSLIIEEFGKH----GLIDNAVEVFNKCT 91 (260)
Q Consensus 44 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~ 91 (260)
...+|.+.|+...+.|. ++...+..|-..|... ++.++|...|+...
T Consensus 194 ~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 44577777777766663 4555445555556544 67888888888876
No 284
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.61 E-value=66 Score=19.72 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHHHhc-CCCCC
Q 041786 236 QFDDAFCFFSEMQIK-THPPN 255 (260)
Q Consensus 236 ~~~~a~~~~~~m~~~-g~~p~ 255 (260)
..++|...|.+|+.. +|.|+
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~ 35 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF 35 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHHHHHHHHcCcCCC
Confidence 346666666666543 66655
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.16 E-value=3.6e+02 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 041786 64 PQTLSLIIEEFGKHGLIDNAVEVFNKCT 91 (260)
Q Consensus 64 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 91 (260)
...+|.|+..|...+.++.|..+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 5678889999999999999999988764
No 286
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.69 E-value=53 Score=18.67 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHHHhcCCCCCC
Q 041786 235 GQFDDAFCFFSEMQIKTHPPNR 256 (260)
Q Consensus 235 g~~~~a~~~~~~m~~~g~~p~~ 256 (260)
|+++.|+..+-+|...+..|+.
T Consensus 37 gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 37 GNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TCHHHHHHHHHHSSCCCCSCCC
T ss_pred CCHHHHHHHHHcCcCCCCCCCC
Confidence 6677777777777666666653
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.40 E-value=87 Score=23.41 Aligned_cols=33 Identities=9% Similarity=-0.134 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHCCCCcC
Q 041786 199 TNKISIPAVSKEFMIDEAFRLLCNLVEDGHKLF 231 (260)
Q Consensus 199 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 231 (260)
-|...-..+-..|++.+|..||+.=.+.+-+|-
T Consensus 152 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 152 FYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 355555555566666666666666555555543
No 288
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=21.19 E-value=91 Score=23.04 Aligned_cols=15 Identities=7% Similarity=-0.157 Sum_probs=7.0
Q ss_pred HHhhhhhccHHHHHH
Q 041786 204 IPAVSKEFMIDEAFR 218 (260)
Q Consensus 204 i~~~~~~g~~~~a~~ 218 (260)
+...++.|+.+-+..
T Consensus 227 l~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 227 RDIAQERMHHDIVRL 241 (253)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 334445555544433
No 289
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.18 E-value=90 Score=17.68 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHHHhcC-CCCC
Q 041786 235 GQFDDAFCFFSEMQIKT-HPPN 255 (260)
Q Consensus 235 g~~~~a~~~~~~m~~~g-~~p~ 255 (260)
-+++.|...|.++...| |+|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 47888888888887664 5554
No 290
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.53 E-value=2.1e+02 Score=19.48 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 142 EFLQELSDKGFNPPVRSAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 142 ~~~~~m~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
.|++.+...+-.+ .|.++++.+.+.+...+..|.---|+.+...|-
T Consensus 31 ~IL~~l~~~~~~~---sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 31 EVVSVLYRSGTHL---SPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHCSSCB---CHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCC---CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3444444433222 578888888877777788888888888888886
No 291
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.41 E-value=2.1e+02 Score=19.34 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHCCCCCChhchHHHHHHHHhcCC
Q 041786 158 SAKQMVNKMIKQGSVPDLETFNSLIETICKSGE 190 (260)
Q Consensus 158 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~~~ 190 (260)
.|.++++.+.+.+...+..|.---|+.+...|-
T Consensus 39 sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 39 TADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp CHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 577888888888777778888888888888886
Done!