Query 041791
Match_columns 421
No_of_seqs 324 out of 1851
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2071 Predicted glutamine am 100.0 5.1E-49 1.1E-53 371.4 20.0 237 8-283 1-241 (243)
2 PRK11366 puuD gamma-glutamyl-g 100.0 2.3E-42 5E-47 335.5 24.1 238 8-285 5-249 (254)
3 PF07722 Peptidase_C26: Peptid 100.0 3.1E-43 6.6E-48 334.2 14.2 210 11-254 1-217 (217)
4 KOG0370 Multifunctional pyrimi 100.0 1.1E-38 2.3E-43 339.3 17.4 271 32-388 184-508 (1435)
5 cd01745 GATase1_2 Subgroup of 100.0 4.3E-32 9.3E-37 252.5 17.2 187 13-277 1-189 (189)
6 PRK06186 hypothetical protein; 100.0 1.5E-30 3.3E-35 247.5 18.8 219 12-282 3-228 (229)
7 TIGR00888 guaA_Nterm GMP synth 100.0 1.8E-29 3.9E-34 234.2 19.3 170 34-279 14-183 (188)
8 PRK08007 para-aminobenzoate sy 100.0 1E-29 2.2E-34 236.4 17.6 182 13-278 2-186 (187)
9 PRK07765 para-aminobenzoate sy 100.0 9.7E-29 2.1E-33 234.4 20.8 189 12-281 2-193 (214)
10 cd01742 GATase1_GMP_Synthase T 100.0 6.1E-29 1.3E-33 228.5 18.4 168 34-277 14-181 (181)
11 PRK00758 GMP synthase subunit 100.0 6.4E-29 1.4E-33 229.7 18.0 168 34-282 15-183 (184)
12 PRK05670 anthranilate synthase 100.0 1.4E-28 3E-33 228.7 19.9 184 13-280 2-188 (189)
13 TIGR00566 trpG_papA glutamine 100.0 1.4E-28 3E-33 228.8 18.3 182 13-278 2-187 (188)
14 PRK06774 para-aminobenzoate sy 100.0 2.1E-28 4.6E-33 227.8 17.0 182 13-278 2-190 (191)
15 cd01746 GATase1_CTP_Synthase T 100.0 4.2E-28 9E-33 233.1 19.0 214 11-277 1-235 (235)
16 cd01744 GATase1_CPSase Small c 100.0 6.9E-28 1.5E-32 222.0 19.3 165 33-277 11-178 (178)
17 cd01747 GATase1_Glutamyl_Hydro 100.0 2.7E-28 5.8E-33 239.3 16.5 202 13-268 1-227 (273)
18 TIGR01368 CPSaseIIsmall carbam 100.0 1.4E-27 3E-32 241.7 22.1 168 33-281 186-357 (358)
19 PRK12564 carbamoyl phosphate s 100.0 1.4E-27 3.1E-32 241.9 21.8 168 32-279 189-359 (360)
20 PRK05380 pyrG CTP synthetase; 100.0 6.7E-28 1.4E-32 252.0 20.0 221 11-285 289-531 (533)
21 PRK07649 para-aminobenzoate/an 100.0 8.3E-28 1.8E-32 225.0 18.0 185 13-281 2-189 (195)
22 CHL00101 trpG anthranilate syn 100.0 6.5E-28 1.4E-32 224.6 16.9 183 13-279 2-188 (190)
23 PLN02347 GMP synthetase 100.0 1.2E-27 2.6E-32 253.5 20.7 201 4-282 4-204 (536)
24 PRK06895 putative anthranilate 100.0 1.8E-27 4E-32 221.4 19.2 183 12-278 3-187 (190)
25 cd01743 GATase1_Anthranilate_S 100.0 2.2E-27 4.7E-32 219.4 19.0 169 34-277 14-184 (184)
26 PRK08857 para-aminobenzoate sy 100.0 1.8E-27 3.8E-32 222.1 17.9 182 13-278 2-191 (193)
27 PLN02335 anthranilate synthase 100.0 3.6E-27 7.9E-32 224.9 19.9 198 7-285 15-218 (222)
28 PRK00074 guaA GMP synthase; Re 100.0 1.2E-27 2.7E-32 253.1 17.1 185 10-278 3-187 (511)
29 PRK05637 anthranilate synthase 99.9 1.1E-26 2.3E-31 219.6 19.9 193 12-281 3-206 (208)
30 TIGR00337 PyrG CTP synthase. C 99.9 4.5E-27 9.8E-32 245.7 19.0 217 9-279 288-525 (525)
31 COG0512 PabA Anthranilate/para 99.9 7.6E-27 1.6E-31 214.7 16.2 184 12-279 3-190 (191)
32 PRK12838 carbamoyl phosphate s 99.9 3.6E-26 7.7E-31 231.1 22.2 171 31-282 178-352 (354)
33 COG0505 CarA Carbamoylphosphat 99.9 1.5E-26 3.3E-31 228.8 18.1 174 32-285 191-367 (368)
34 COG0518 GuaA GMP synthase - Gl 99.9 1.3E-26 2.8E-31 217.2 14.9 187 11-278 2-191 (198)
35 PF00117 GATase: Glutamine ami 99.9 2.2E-25 4.7E-30 206.4 16.0 175 32-277 11-189 (192)
36 PRK13566 anthranilate synthase 99.9 4.5E-25 9.7E-30 240.7 21.0 195 7-281 523-719 (720)
37 PRK09065 glutamine amidotransf 99.9 4.4E-25 9.5E-30 212.5 17.5 157 37-257 30-190 (237)
38 CHL00197 carA carbamoyl-phosph 99.9 1.7E-24 3.7E-29 220.5 22.0 183 10-284 192-378 (382)
39 PRK07567 glutamine amidotransf 99.9 6.1E-25 1.3E-29 212.1 17.3 187 10-257 2-194 (242)
40 PRK05665 amidotransferase; Pro 99.9 5.8E-25 1.3E-29 212.0 17.0 182 12-257 4-190 (240)
41 PRK14607 bifunctional glutamin 99.9 3.8E-25 8.3E-30 235.3 16.3 186 12-281 1-190 (534)
42 cd01741 GATase1_1 Subgroup of 99.9 1.4E-24 3.1E-29 200.8 17.0 174 12-254 1-180 (188)
43 TIGR01815 TrpE-clade3 anthrani 99.9 2.3E-24 5E-29 234.9 21.3 194 8-281 514-709 (717)
44 PRK06490 glutamine amidotransf 99.9 1E-23 2.2E-28 203.3 20.4 180 7-257 4-183 (239)
45 COG0504 PyrG CTP synthase (UTP 99.9 5.4E-24 1.2E-28 217.4 17.4 152 113-285 361-531 (533)
46 PRK09522 bifunctional glutamin 99.9 4.9E-24 1.1E-28 226.1 16.7 186 12-282 3-192 (531)
47 PLN02771 carbamoyl-phosphate s 99.9 1.1E-23 2.5E-28 215.3 18.4 152 33-258 253-407 (415)
48 PLN02327 CTP synthase 99.9 1.1E-23 2.4E-28 220.8 18.2 175 58-286 357-552 (557)
49 PRK13525 glutamine amidotransf 99.9 8.5E-23 1.8E-27 190.2 18.3 188 10-281 1-188 (189)
50 PLN02889 oxo-acid-lyase/anthra 99.9 1.1E-22 2.4E-27 224.6 20.9 198 12-286 83-341 (918)
51 PRK07053 glutamine amidotransf 99.9 1.7E-22 3.8E-27 194.2 17.8 178 10-257 2-182 (234)
52 TIGR01823 PabB-fungal aminodeo 99.9 3.1E-22 6.7E-27 219.7 19.1 199 9-286 4-210 (742)
53 PRK13146 hisH imidazole glycer 99.9 1.2E-22 2.6E-27 192.1 13.1 190 12-279 3-207 (209)
54 PRK08250 glutamine amidotransf 99.9 3.3E-22 7.2E-27 192.3 16.2 165 33-257 16-184 (235)
55 PRK13152 hisH imidazole glycer 99.9 7.1E-22 1.5E-26 185.5 16.6 179 34-278 15-200 (201)
56 PRK13141 hisH imidazole glycer 99.9 2.1E-22 4.5E-27 189.4 12.8 177 33-281 14-203 (205)
57 COG0118 HisH Glutamine amidotr 99.9 3.8E-22 8.3E-27 184.7 13.4 181 34-280 17-203 (204)
58 PRK13170 hisH imidazole glycer 99.9 2.3E-21 5.1E-26 181.5 17.5 175 34-278 16-195 (196)
59 PRK13527 glutamine amidotransf 99.9 2.8E-21 6.1E-26 181.2 17.9 185 12-281 2-198 (200)
60 PRK13181 hisH imidazole glycer 99.9 5.3E-22 1.1E-26 185.9 12.7 180 33-278 14-198 (199)
61 PRK13143 hisH imidazole glycer 99.9 2.4E-21 5.1E-26 181.9 16.8 196 12-281 2-199 (200)
62 cd01748 GATase1_IGP_Synthase T 99.9 5E-22 1.1E-26 185.7 12.2 172 34-277 14-198 (198)
63 CHL00188 hisH imidazole glycer 99.9 8.7E-22 1.9E-26 186.4 12.9 192 12-279 3-209 (210)
64 TIGR01855 IMP_synth_hisH imida 99.8 1.2E-20 2.6E-25 176.6 12.8 170 34-279 14-196 (196)
65 KOG1622 GMP synthase [Nucleoti 99.8 7.5E-21 1.6E-25 191.8 11.3 202 7-282 13-222 (552)
66 PRK14004 hisH imidazole glycer 99.8 7.1E-20 1.5E-24 173.4 13.9 181 33-279 14-209 (210)
67 TIGR01737 FGAM_synth_I phospho 99.8 4E-19 8.8E-24 170.0 17.0 199 12-279 2-226 (227)
68 cd01749 GATase1_PB Glutamine A 99.8 1.8E-19 3.9E-24 166.9 12.2 183 13-277 1-183 (183)
69 KOG1559 Gamma-glutamyl hydrola 99.8 1.4E-19 3E-24 170.6 10.5 210 8-273 50-287 (340)
70 KOG2387 CTP synthase (UTP-ammo 99.8 4.1E-19 9E-24 178.9 14.0 178 55-282 355-549 (585)
71 TIGR03800 PLP_synth_Pdx2 pyrid 99.8 9.4E-19 2E-23 162.5 14.4 184 12-278 1-184 (184)
72 PLN02617 imidazole glycerol ph 99.8 6.5E-18 1.4E-22 179.4 16.5 195 11-282 7-212 (538)
73 PRK03619 phosphoribosylformylg 99.8 2.9E-17 6.3E-22 156.5 18.0 198 12-278 2-218 (219)
74 KOG0026 Anthranilate synthase, 99.8 1.3E-17 2.9E-22 149.2 13.6 192 10-282 19-216 (223)
75 PRK13142 hisH imidazole glycer 99.7 1.5E-17 3.2E-22 155.3 13.1 168 32-278 13-186 (192)
76 PLN02832 glutamine amidotransf 99.7 9.7E-16 2.1E-20 148.1 17.5 88 11-141 2-89 (248)
77 KOG3179 Predicted glutamine sy 99.7 3.5E-16 7.5E-21 144.3 9.8 164 35-257 31-196 (245)
78 KOG1224 Para-aminobenzoate (PA 99.6 8.4E-15 1.8E-19 150.6 12.8 191 12-282 16-219 (767)
79 PRK01175 phosphoribosylformylg 99.6 5.2E-14 1.1E-18 137.5 17.8 225 8-280 1-257 (261)
80 PRK05368 homoserine O-succinyl 99.6 3.7E-14 8E-19 140.7 13.2 111 114-257 125-240 (302)
81 PRK13526 glutamine amidotransf 99.5 6.7E-13 1.5E-17 122.5 15.7 175 11-278 3-178 (179)
82 cd01740 GATase1_FGAR_AT Type 1 99.5 7E-13 1.5E-17 127.9 15.8 178 33-259 14-218 (238)
83 COG0047 PurL Phosphoribosylfor 99.5 3.8E-12 8.2E-17 120.2 17.6 201 10-279 2-229 (231)
84 PF01174 SNO: SNO glutamine am 99.4 4.6E-12 1E-16 116.9 13.0 166 33-281 10-187 (188)
85 COG0311 PDX2 Predicted glutami 99.4 1.2E-11 2.5E-16 113.3 15.4 184 11-281 1-191 (194)
86 PF13507 GATase_5: CobB/CobQ-l 99.3 3.8E-11 8.2E-16 117.2 14.6 225 10-279 1-258 (259)
87 KOG0623 Glutamine amidotransfe 99.3 1.8E-11 3.8E-16 120.9 11.0 177 34-278 17-206 (541)
88 TIGR01857 FGAM-synthase phosph 99.1 1.8E-09 4E-14 123.7 17.8 225 8-278 975-1237(1239)
89 PLN03206 phosphoribosylformylg 98.9 4.4E-08 9.5E-13 113.3 18.1 211 8-260 1035-1276(1307)
90 PRK05297 phosphoribosylformylg 98.8 3.6E-08 7.8E-13 114.7 15.5 203 9-260 1034-1263(1290)
91 TIGR01735 FGAM_synt phosphorib 98.8 2.7E-08 5.9E-13 115.5 13.7 204 8-260 1053-1284(1310)
92 cd03130 GATase1_CobB Type 1 gl 98.6 1E-06 2.2E-11 82.8 15.0 83 28-141 10-92 (198)
93 cd01750 GATase1_CobQ Type 1 gl 98.5 4.1E-07 8.9E-12 85.1 9.1 75 35-142 16-90 (194)
94 PHA03366 FGAM-synthase; Provis 98.5 3.4E-06 7.3E-11 98.5 17.1 210 7-259 1025-1270(1304)
95 PRK06278 cobyrinic acid a,c-di 98.4 1.6E-06 3.5E-11 91.6 12.5 80 12-141 2-82 (476)
96 TIGR01739 tegu_FGAM_synt herpe 98.4 7.4E-06 1.6E-10 95.2 16.9 210 8-259 927-1171(1202)
97 cd03131 GATase1_HTS Type 1 glu 98.4 5E-07 1.1E-11 83.5 5.5 82 114-222 88-174 (175)
98 PRK01077 cobyrinic acid a,c-di 98.3 4.3E-05 9.3E-10 80.5 19.5 94 11-141 246-339 (451)
99 PF04204 HTS: Homoserine O-suc 98.3 4.2E-06 9.1E-11 83.1 11.1 110 114-257 124-239 (298)
100 TIGR00379 cobB cobyrinic acid 98.3 5.4E-05 1.2E-09 79.7 18.9 94 11-141 245-338 (449)
101 KOG3210 Imidazoleglycerol-phos 98.3 1.9E-05 4.2E-10 71.7 12.8 22 120-141 86-108 (226)
102 cd03146 GAT1_Peptidase_E Type 98.0 1.1E-05 2.4E-10 76.5 7.4 100 9-140 30-130 (212)
103 TIGR01001 metA homoserine O-su 98.0 3.3E-05 7.2E-10 76.4 9.7 109 115-257 126-239 (300)
104 PRK13896 cobyrinic acid a,c-di 97.9 0.00037 8E-09 73.1 16.2 92 11-141 234-325 (433)
105 PF07685 GATase_3: CobB/CobQ-l 97.9 0.0001 2.3E-09 66.7 10.5 29 114-142 32-60 (158)
106 KOG1907 Phosphoribosylformylgl 97.8 9.8E-05 2.1E-09 81.2 10.8 207 7-259 1055-1288(1320)
107 cd01653 GATase1 Type 1 glutami 97.8 8.3E-05 1.8E-09 59.4 7.4 78 32-137 15-92 (115)
108 PRK00784 cobyric acid synthase 97.8 4.4E-05 9.4E-10 81.3 6.8 76 33-141 266-342 (488)
109 cd03128 GAT_1 Type 1 glutamine 97.6 0.00023 5E-09 54.3 6.6 77 33-137 16-92 (92)
110 PRK05282 (alpha)-aspartyl dipe 97.3 0.00059 1.3E-08 66.0 7.6 101 10-142 31-131 (233)
111 COG0458 CarB Carbamoylphosphat 97.3 0.00021 4.5E-09 73.4 4.6 71 317-390 22-127 (400)
112 TIGR00313 cobQ cobyric acid sy 97.3 0.00021 4.5E-09 75.9 4.4 27 115-141 310-336 (475)
113 PRK11780 isoprenoid biosynthes 97.2 0.0046 1E-07 59.1 11.6 31 111-141 115-145 (217)
114 cd03144 GATase1_ScBLP_like Typ 97.1 0.00037 7.9E-09 60.1 2.6 24 114-137 67-90 (114)
115 cd03129 GAT1_Peptidase_E_like 97.0 0.0025 5.3E-08 60.2 8.0 100 9-140 28-130 (210)
116 cd03169 GATase1_PfpI_1 Type 1 97.0 0.0041 8.8E-08 57.0 9.0 28 113-140 97-124 (180)
117 COG1492 CobQ Cobyric acid synt 96.8 0.006 1.3E-07 64.4 9.1 70 38-140 271-341 (486)
118 cd03134 GATase1_PfpI_like A ty 96.6 0.016 3.5E-07 52.0 9.5 28 113-140 83-110 (165)
119 TIGR01382 PfpI intracellular p 96.5 0.021 4.5E-07 51.3 9.6 28 113-140 81-108 (166)
120 cd03133 GATase1_ES1 Type 1 glu 96.3 0.017 3.6E-07 55.2 8.4 31 112-142 113-143 (213)
121 COG1797 CobB Cobyrinic acid a, 96.3 0.11 2.3E-06 54.4 14.7 196 12-280 247-450 (451)
122 COG3442 Predicted glutamine am 96.3 0.0044 9.5E-08 58.9 4.2 75 38-141 30-104 (250)
123 cd03145 GAT1_cyanophycinase Ty 95.8 0.029 6.3E-07 53.5 7.5 100 10-140 29-133 (217)
124 cd03132 GATase1_catalase Type 95.8 0.057 1.2E-06 47.4 8.7 97 11-140 2-111 (142)
125 PRK04155 chaperone protein Hch 95.8 0.045 9.8E-07 54.6 8.8 29 112-140 168-196 (287)
126 cd03148 GATase1_EcHsp31_like T 95.7 0.042 9.2E-07 53.1 8.3 28 113-140 118-145 (232)
127 PF01965 DJ-1_PfpI: DJ-1/PfpI 95.6 0.011 2.4E-07 52.5 3.6 30 111-140 58-87 (147)
128 cd03147 GATase1_Ydr533c_like T 95.6 0.023 4.9E-07 54.9 5.7 28 113-140 116-143 (231)
129 PRK11574 oxidative-stress-resi 95.6 0.13 2.8E-06 47.7 10.6 26 114-139 89-114 (196)
130 cd03137 GATase1_AraC_1 AraC tr 95.4 0.075 1.6E-06 48.6 8.2 28 113-140 85-112 (187)
131 COG1897 MetA Homoserine trans- 95.0 0.089 1.9E-06 51.3 7.6 110 115-258 126-241 (307)
132 TIGR02069 cyanophycinase cyano 95.0 0.075 1.6E-06 51.9 7.3 99 10-139 28-131 (250)
133 cd03140 GATase1_PfpI_3 Type 1 94.7 0.077 1.7E-06 48.1 6.3 27 114-140 81-107 (170)
134 PF03575 Peptidase_S51: Peptid 94.5 0.049 1.1E-06 48.9 4.4 77 33-136 4-81 (154)
135 cd03135 GATase1_DJ-1 Type 1 gl 94.3 0.084 1.8E-06 46.9 5.4 28 113-140 82-109 (163)
136 PF09825 BPL_N: Biotin-protein 94.0 1.5 3.3E-05 45.3 14.6 51 61-139 47-97 (367)
137 cd03141 GATase1_Hsp31_like Typ 93.9 0.081 1.8E-06 50.5 4.9 28 113-140 112-139 (221)
138 PRK11249 katE hydroperoxidase 93.7 0.45 9.8E-06 53.3 10.7 97 11-140 598-707 (752)
139 COG0693 ThiJ Putative intracel 93.7 0.099 2.2E-06 48.0 4.8 28 113-140 88-115 (188)
140 cd03138 GATase1_AraC_2 AraC tr 93.1 0.2 4.4E-06 46.2 5.9 28 113-140 93-120 (195)
141 TIGR01383 not_thiJ DJ-1 family 92.4 0.23 5E-06 45.0 5.2 28 113-140 85-112 (179)
142 cd03136 GATase1_AraC_ArgR_like 91.2 0.46 9.9E-06 43.5 5.8 28 113-140 84-111 (185)
143 COG3340 PepE Peptidase E [Amin 90.8 0.89 1.9E-05 43.5 7.3 76 34-136 54-130 (224)
144 TIGR01369 CPSaseII_lrg carbamo 90.8 0.35 7.6E-06 56.5 5.6 83 305-390 5-138 (1050)
145 cd03139 GATase1_PfpI_2 Type 1 90.7 0.42 9.1E-06 43.3 5.0 27 114-140 84-110 (183)
146 PF00289 CPSase_L_chain: Carba 90.1 0.37 8.1E-06 41.2 3.8 66 306-373 2-110 (110)
147 PRK12815 carB carbamoyl phosph 90.1 0.3 6.5E-06 57.1 4.3 84 305-391 6-140 (1068)
148 PRK03378 ppnK inorganic polyph 89.7 1.7 3.6E-05 43.5 8.7 87 8-134 3-97 (292)
149 PRK03372 ppnK inorganic polyph 89.2 1.8 3.9E-05 43.6 8.6 88 6-134 2-106 (306)
150 PLN02735 carbamoyl-phosphate s 89.0 0.38 8.3E-06 56.4 4.1 83 305-390 22-155 (1102)
151 PF13278 DUF4066: Putative ami 88.7 0.67 1.4E-05 41.6 4.6 26 115-140 84-109 (166)
152 PRK09393 ftrA transcriptional 88.4 1.1 2.3E-05 44.9 6.4 55 347-407 245-307 (322)
153 TIGR00177 molyb_syn molybdenum 88.3 2 4.2E-05 38.2 7.3 65 11-75 1-78 (144)
154 PRK05294 carB carbamoyl phosph 86.8 0.67 1.5E-05 54.2 4.4 83 305-390 6-139 (1066)
155 PRK14077 pnk inorganic polypho 84.9 2.9 6.2E-05 41.8 7.2 83 11-134 11-98 (287)
156 PRK01911 ppnK inorganic polyph 84.3 5.1 0.00011 40.1 8.7 83 12-134 2-98 (292)
157 PRK02649 ppnK inorganic polyph 83.5 5.1 0.00011 40.4 8.3 84 11-134 2-102 (305)
158 PRK04539 ppnK inorganic polyph 83.1 7.8 0.00017 38.9 9.4 84 11-134 6-102 (296)
159 PRK01215 competence damage-ind 82.9 3.4 7.4E-05 40.7 6.7 67 8-74 1-73 (264)
160 PRK02155 ppnK NAD(+)/NADH kina 82.2 7.5 0.00016 38.9 8.9 85 10-134 5-97 (291)
161 TIGR02667 moaB_proteo molybden 81.7 7.1 0.00015 35.5 7.9 69 8-77 2-77 (163)
162 COG4242 CphB Cyanophycinase an 80.2 5.1 0.00011 39.3 6.6 99 10-139 52-155 (293)
163 cd00758 MoCF_BD MoCF_BD: molyb 80.2 6.5 0.00014 34.3 6.8 64 13-76 2-71 (133)
164 PRK05294 carB carbamoyl phosph 80.2 1.5 3.2E-05 51.4 3.6 83 305-392 553-682 (1066)
165 PRK12815 carB carbamoyl phosph 79.9 1.7 3.6E-05 51.0 3.8 84 305-393 554-684 (1068)
166 KOG2764 Putative transcription 79.5 15 0.00032 35.7 9.4 29 113-142 89-117 (247)
167 cd03522 MoeA_like MoeA_like. T 78.2 7.6 0.00017 39.3 7.5 70 8-77 157-233 (312)
168 COG0303 MoeA Molybdopterin bio 77.5 11 0.00023 39.7 8.5 66 10-75 176-254 (404)
169 TIGR00110 ilvD dihydroxy-acid 77.3 8.2 0.00018 41.8 7.7 50 1-50 2-53 (535)
170 TIGR01369 CPSaseII_lrg carbamo 76.9 2.1 4.6E-05 50.1 3.5 83 305-392 553-682 (1050)
171 PRK00911 dihydroxy-acid dehydr 76.8 6.8 0.00015 42.6 7.0 50 1-50 22-73 (552)
172 PRK09417 mogA molybdenum cofac 76.3 15 0.00033 34.6 8.5 67 9-77 2-80 (193)
173 PRK10680 molybdopterin biosynt 75.8 8 0.00017 40.6 7.2 76 2-77 168-257 (411)
174 PRK13017 dihydroxy-acid dehydr 75.7 8.6 0.00019 42.1 7.4 74 1-74 36-131 (596)
175 PRK02645 ppnK inorganic polyph 75.4 14 0.00031 37.1 8.5 61 9-72 2-66 (305)
176 PRK14690 molybdopterin biosynt 75.1 9.4 0.0002 40.2 7.4 67 10-76 193-272 (419)
177 PRK13016 dihydroxy-acid dehydr 75.0 7.7 0.00017 42.4 6.8 74 1-74 32-126 (577)
178 PRK14497 putative molybdopteri 74.9 9.3 0.0002 41.6 7.5 66 10-76 179-258 (546)
179 cd00887 MoeA MoeA family. Memb 74.9 8.3 0.00018 40.1 7.0 68 9-76 167-247 (394)
180 PRK06131 dihydroxy-acid dehydr 73.2 10 0.00022 41.5 7.2 74 1-74 28-122 (571)
181 cd00886 MogA_MoaB MogA_MoaB fa 72.9 15 0.00032 32.8 7.3 65 12-76 2-74 (152)
182 PRK12448 dihydroxy-acid dehydr 72.3 14 0.00031 40.6 8.1 50 1-50 24-75 (615)
183 PLN02735 carbamoyl-phosphate s 71.4 4.9 0.00011 47.4 4.7 85 305-392 573-715 (1102)
184 PRK01231 ppnK inorganic polyph 70.7 20 0.00044 35.9 8.3 84 11-134 5-96 (295)
185 cd06305 PBP1_methylthioribose_ 70.3 29 0.00063 32.6 9.1 58 13-72 2-64 (273)
186 cd06295 PBP1_CelR Ligand bindi 70.2 35 0.00075 32.3 9.6 61 12-72 5-73 (275)
187 COG4285 Uncharacterized conser 68.7 5.9 0.00013 38.1 3.7 44 63-134 49-92 (253)
188 PLN02935 Bifunctional NADH kin 68.4 21 0.00044 38.6 8.1 85 10-134 194-296 (508)
189 PRK14498 putative molybdopteri 68.1 14 0.0003 40.8 7.1 68 10-77 186-266 (633)
190 cd06281 PBP1_LacI_like_5 Ligan 67.8 39 0.00084 31.9 9.4 58 13-72 2-64 (269)
191 PRK02231 ppnK inorganic polyph 67.0 17 0.00036 36.1 6.8 64 34-134 5-76 (272)
192 PRK03708 ppnK inorganic polyph 66.2 22 0.00048 35.2 7.5 82 12-134 2-90 (277)
193 cd00885 cinA Competence-damage 65.3 19 0.00042 33.0 6.4 63 13-75 2-70 (170)
194 PRK14491 putative bifunctional 64.9 20 0.00043 39.5 7.5 75 2-76 358-446 (597)
195 PLN02727 NAD kinase 64.0 21 0.00045 41.2 7.4 83 11-134 679-777 (986)
196 cd06318 PBP1_ABC_sugar_binding 63.2 43 0.00093 31.7 8.7 58 13-72 2-64 (282)
197 cd06274 PBP1_FruR Ligand bindi 62.9 50 0.0011 30.9 9.1 58 13-72 2-64 (264)
198 smart00852 MoCF_biosynth Proba 62.5 28 0.00061 30.1 6.7 49 28-76 17-70 (135)
199 cd01536 PBP1_ABC_sugar_binding 62.5 52 0.0011 30.4 9.0 59 12-72 1-64 (267)
200 cd01542 PBP1_TreR_like Ligand- 62.2 49 0.0011 30.8 8.8 58 13-72 2-64 (259)
201 PLN02929 NADH kinase 61.7 20 0.00043 36.2 6.2 58 34-133 39-96 (301)
202 cd06279 PBP1_LacI_like_3 Ligan 61.7 54 0.0012 31.3 9.2 60 13-72 2-65 (283)
203 cd06273 PBP1_GntR_like_1 This 61.6 52 0.0011 30.8 8.9 58 13-72 2-64 (268)
204 cd06310 PBP1_ABC_sugar_binding 61.3 49 0.0011 31.1 8.7 59 12-72 1-66 (273)
205 cd06299 PBP1_LacI_like_13 Liga 60.5 64 0.0014 30.1 9.3 58 13-72 2-64 (265)
206 PF01513 NAD_kinase: ATP-NAD k 60.4 9.9 0.00021 37.6 3.8 21 114-134 90-110 (285)
207 cd06282 PBP1_GntR_like_2 Ligan 60.4 48 0.001 30.8 8.4 58 13-72 2-64 (266)
208 cd06292 PBP1_LacI_like_10 Liga 60.1 69 0.0015 30.1 9.5 58 13-72 2-64 (273)
209 PRK14076 pnk inorganic polypho 60.0 33 0.00072 37.6 8.1 83 12-134 292-382 (569)
210 cd01545 PBP1_SalR Ligand-bindi 59.9 68 0.0015 29.9 9.4 58 13-72 2-65 (270)
211 PRK08211 putative dehydratase; 59.8 19 0.00042 39.8 6.1 50 1-50 52-115 (655)
212 cd06301 PBP1_rhizopine_binding 59.2 56 0.0012 30.7 8.7 58 13-72 2-65 (272)
213 cd06271 PBP1_AglR_RafR_like Li 58.9 67 0.0015 29.9 9.1 61 12-72 1-68 (268)
214 PF07085 DRTGG: DRTGG domain; 58.7 16 0.00034 30.3 4.3 31 43-74 41-72 (105)
215 cd01537 PBP1_Repressors_Sugar_ 58.4 65 0.0014 29.5 8.8 58 13-72 2-64 (264)
216 cd06298 PBP1_CcpA_like Ligand- 58.3 56 0.0012 30.5 8.5 58 13-72 2-64 (268)
217 PF09832 DUF2059: Uncharacteri 57.9 14 0.00031 27.9 3.5 27 378-404 5-31 (64)
218 COG0061 nadF NAD kinase [Coenz 57.8 35 0.00077 33.8 7.2 83 12-134 2-89 (281)
219 cd06284 PBP1_LacI_like_6 Ligan 57.5 76 0.0016 29.5 9.3 58 13-72 2-64 (267)
220 cd01575 PBP1_GntR Ligand-bindi 57.5 61 0.0013 30.2 8.6 58 13-72 2-64 (268)
221 cd05014 SIS_Kpsf KpsF-like pro 57.2 50 0.0011 27.7 7.3 19 114-132 64-82 (128)
222 cd06322 PBP1_ABC_sugar_binding 57.2 70 0.0015 29.9 9.0 59 12-72 1-64 (267)
223 PRK01372 ddl D-alanine--D-alan 57.0 68 0.0015 31.4 9.2 61 9-70 3-63 (304)
224 cd06267 PBP1_LacI_sugar_bindin 57.0 74 0.0016 29.2 9.0 59 13-73 2-65 (264)
225 cd06283 PBP1_RegR_EndR_KdgR_li 57.0 66 0.0014 29.9 8.7 58 13-72 2-64 (267)
226 cd01540 PBP1_arabinose_binding 56.9 60 0.0013 30.9 8.6 57 13-72 2-63 (289)
227 COG0521 MoaB Molybdopterin bio 56.5 28 0.0006 32.2 5.7 64 12-77 9-81 (169)
228 PRK10355 xylF D-xylose transpo 56.1 81 0.0018 31.5 9.6 62 9-72 24-90 (330)
229 cd06277 PBP1_LacI_like_1 Ligan 56.0 80 0.0017 29.6 9.2 50 23-72 13-67 (268)
230 PF06283 ThuA: Trehalose utili 55.9 1.8E+02 0.0038 27.2 14.3 87 12-134 1-91 (217)
231 COG2185 Sbm Methylmalonyl-CoA 54.4 37 0.00081 30.5 6.0 60 8-71 10-71 (143)
232 cd06309 PBP1_YtfQ_like Peripla 54.3 73 0.0016 30.1 8.6 58 13-72 2-64 (273)
233 cd06285 PBP1_LacI_like_7 Ligan 53.7 78 0.0017 29.6 8.7 58 13-72 2-64 (265)
234 cd01538 PBP1_ABC_xylose_bindin 53.6 85 0.0018 30.1 9.1 58 13-72 2-64 (288)
235 cd06300 PBP1_ABC_sugar_binding 53.6 80 0.0017 29.7 8.8 59 12-72 1-69 (272)
236 TIGR03432 yjhG_yagF probable d 53.1 31 0.00066 38.2 6.3 50 1-50 46-109 (640)
237 PRK03501 ppnK inorganic polyph 51.7 60 0.0013 32.1 7.6 45 12-72 4-48 (264)
238 PRK04885 ppnK inorganic polyph 51.2 33 0.00071 33.9 5.7 68 12-134 2-71 (265)
239 cd06324 PBP1_ABC_sugar_binding 51.2 92 0.002 30.3 9.0 59 13-72 2-67 (305)
240 cd06319 PBP1_ABC_sugar_binding 50.8 1.2E+02 0.0025 28.5 9.4 59 12-72 1-64 (277)
241 COG4977 Transcriptional regula 50.3 40 0.00087 34.4 6.3 47 347-399 247-295 (328)
242 PLN02493 probable peroxisomal 50.2 59 0.0013 33.7 7.6 85 33-146 214-305 (367)
243 PF00532 Peripla_BP_1: Peripla 50.2 77 0.0017 30.9 8.2 59 11-72 2-65 (279)
244 cd06320 PBP1_allose_binding Pe 49.6 1.2E+02 0.0025 28.6 9.2 58 13-72 2-66 (275)
245 PRK11303 DNA-binding transcrip 48.9 1.5E+02 0.0032 28.9 10.0 61 10-72 61-126 (328)
246 PRK10653 D-ribose transporter 48.7 2E+02 0.0043 27.6 10.9 62 9-72 25-91 (295)
247 PRK03604 moaC bifunctional mol 48.3 72 0.0016 32.4 7.7 66 12-77 157-229 (312)
248 PLN02699 Bifunctional molybdop 47.9 61 0.0013 36.2 7.8 66 10-75 181-261 (659)
249 PRK10014 DNA-binding transcrip 47.6 1.4E+02 0.0031 29.2 9.8 61 11-73 65-130 (342)
250 PF10087 DUF2325: Uncharacteri 47.3 1.3E+02 0.0029 24.5 8.0 42 32-73 13-58 (97)
251 PF02514 CobN-Mg_chel: CobN/Ma 47.1 60 0.0013 38.5 7.9 65 8-73 69-141 (1098)
252 cd01544 PBP1_GalR Ligand-bindi 47.0 1.2E+02 0.0025 28.7 8.8 57 12-71 1-60 (270)
253 COG1570 XseA Exonuclease VII, 46.7 66 0.0014 34.2 7.3 63 6-75 131-206 (440)
254 PRK12419 riboflavin synthase s 46.6 1E+02 0.0023 28.2 7.8 60 10-71 10-77 (158)
255 cd06302 PBP1_LsrB_Quorum_Sensi 46.5 1.2E+02 0.0027 29.3 9.0 58 13-72 2-65 (298)
256 PLN02699 Bifunctional molybdop 46.0 96 0.0021 34.7 9.0 74 4-77 452-538 (659)
257 KOG0538 Glycolate oxidase [Ene 46.0 56 0.0012 33.2 6.3 83 34-145 214-303 (363)
258 cd06321 PBP1_ABC_sugar_binding 45.8 1.2E+02 0.0025 28.6 8.5 58 13-72 2-66 (271)
259 PRK03673 hypothetical protein; 45.8 59 0.0013 34.1 6.9 64 10-73 1-70 (396)
260 PF02601 Exonuc_VII_L: Exonucl 45.5 91 0.002 31.1 8.0 16 114-129 97-112 (319)
261 cd06317 PBP1_ABC_sugar_binding 45.1 1.3E+02 0.0029 28.0 8.8 59 13-72 2-65 (275)
262 COG1609 PurR Transcriptional r 45.0 1.5E+02 0.0032 29.9 9.5 59 11-71 59-122 (333)
263 PRK14987 gluconate operon tran 44.9 1.7E+02 0.0037 28.6 9.8 59 11-71 64-127 (331)
264 cd06323 PBP1_ribose_binding Pe 44.6 1.1E+02 0.0024 28.3 8.2 48 24-71 11-63 (268)
265 PF13407 Peripla_BP_4: Peripla 44.4 1.1E+02 0.0024 28.4 8.1 58 13-72 1-64 (257)
266 cd06316 PBP1_ABC_sugar_binding 44.2 1.5E+02 0.0031 28.5 9.1 58 13-72 2-65 (294)
267 TIGR02634 xylF D-xylose ABC tr 44.1 1.3E+02 0.0028 29.3 8.8 50 23-72 9-63 (302)
268 PRK14075 pnk inorganic polypho 44.0 1E+02 0.0022 30.1 7.9 37 30-72 14-50 (256)
269 cd06297 PBP1_LacI_like_12 Liga 44.0 1.1E+02 0.0023 29.0 8.0 58 13-72 2-64 (269)
270 COG0129 IlvD Dihydroxyacid deh 44.0 62 0.0014 35.5 6.8 50 1-50 33-84 (575)
271 PF08998 Epsilon_antitox: Bact 43.8 26 0.00057 28.7 3.0 30 386-415 56-85 (89)
272 PF01070 FMN_dh: FMN-dependent 43.3 44 0.00095 34.4 5.4 85 33-146 215-306 (356)
273 cd06278 PBP1_LacI_like_2 Ligan 43.2 1.7E+02 0.0038 27.0 9.2 58 13-72 2-63 (266)
274 cd06315 PBP1_ABC_sugar_binding 43.1 2.2E+02 0.0048 27.1 10.1 59 12-72 2-65 (280)
275 TIGR00288 conserved hypothetic 42.8 94 0.002 28.5 6.9 62 32-131 69-136 (160)
276 PRK08811 uroporphyrinogen-III 42.8 55 0.0012 32.1 5.8 64 2-74 10-80 (266)
277 PLN02979 glycolate oxidase 42.0 96 0.0021 32.2 7.6 85 33-146 213-304 (366)
278 cd06306 PBP1_TorT-like TorT-li 41.9 1.8E+02 0.004 27.4 9.3 59 12-72 1-66 (268)
279 cd06308 PBP1_sensor_kinase_lik 41.6 1.6E+02 0.0034 27.6 8.7 58 13-72 2-65 (270)
280 cd06296 PBP1_CatR_like Ligand- 41.5 1.5E+02 0.0032 27.6 8.5 58 13-72 2-64 (270)
281 TIGR02417 fruct_sucro_rep D-fr 41.4 2.2E+02 0.0047 27.8 9.9 60 11-72 61-125 (327)
282 PF06223 Phage_tail_T: Minor t 40.9 26 0.00057 29.7 2.7 22 383-404 11-32 (103)
283 TIGR01481 ccpA catabolite cont 40.7 1.9E+02 0.0042 28.1 9.4 60 11-72 60-124 (329)
284 PRK04761 ppnK inorganic polyph 40.6 31 0.00067 33.8 3.6 21 114-134 39-59 (246)
285 TIGR00200 cinA_nterm competenc 40.5 87 0.0019 33.0 7.2 63 12-74 2-70 (413)
286 PRK10703 DNA-binding transcrip 40.4 1.9E+02 0.0041 28.3 9.4 60 11-72 60-124 (341)
287 PF00389 2-Hacid_dh: D-isomer 40.3 30 0.00065 29.7 3.2 47 31-79 8-54 (133)
288 PRK00561 ppnK inorganic polyph 39.9 32 0.0007 33.9 3.7 21 114-134 47-67 (259)
289 PRK00286 xseA exodeoxyribonucl 39.6 96 0.0021 32.5 7.5 86 7-129 132-229 (438)
290 cd06314 PBP1_tmGBP Periplasmic 39.5 1.6E+02 0.0035 27.6 8.5 57 13-72 2-64 (271)
291 cd06294 PBP1_ycjW_transcriptio 39.5 2.1E+02 0.0045 26.6 9.2 50 23-72 15-69 (270)
292 cd01539 PBP1_GGBP Periplasmic 39.3 1.8E+02 0.0039 28.2 9.0 59 12-72 1-66 (303)
293 cd06289 PBP1_MalI_like Ligand- 39.2 2.1E+02 0.0046 26.4 9.2 58 13-72 2-64 (268)
294 cd06270 PBP1_GalS_like Ligand 38.4 1.9E+02 0.0041 27.0 8.7 58 13-72 2-64 (268)
295 cd01541 PBP1_AraR Ligand-bindi 38.0 2.1E+02 0.0045 26.8 9.0 58 13-72 2-64 (273)
296 PF00885 DMRL_synthase: 6,7-di 37.7 1E+02 0.0022 27.6 6.3 62 8-71 1-70 (144)
297 cd06312 PBP1_ABC_sugar_binding 37.7 1.8E+02 0.004 27.3 8.5 49 24-72 12-66 (271)
298 PF05368 NmrA: NmrA-like famil 37.3 1.7E+02 0.0038 27.1 8.2 39 34-73 36-74 (233)
299 cd06293 PBP1_LacI_like_11 Liga 37.1 2.6E+02 0.0057 26.0 9.5 58 13-72 2-64 (269)
300 cd01543 PBP1_XylR Ligand-bindi 36.9 1.8E+02 0.0038 27.3 8.2 55 12-71 1-58 (265)
301 PRK01185 ppnK inorganic polyph 36.5 1.4E+02 0.003 29.7 7.5 56 12-72 2-61 (271)
302 cd01574 PBP1_LacI Ligand-bindi 36.4 2.6E+02 0.0057 25.9 9.3 58 13-72 2-65 (264)
303 cd01391 Periplasmic_Binding_Pr 36.3 2.4E+02 0.0053 25.2 8.8 60 13-73 2-68 (269)
304 PRK14571 D-alanyl-alanine synt 35.2 2.3E+02 0.0051 27.7 9.1 59 12-70 2-60 (299)
305 cd06272 PBP1_hexuronate_repres 34.7 2.2E+02 0.0047 26.5 8.4 57 13-72 2-60 (261)
306 PF03358 FMN_red: NADPH-depend 34.1 73 0.0016 27.7 4.7 58 12-70 2-77 (152)
307 TIGR00147 lipid kinase, YegS/R 34.0 2.3E+02 0.005 27.6 8.8 62 11-73 2-67 (293)
308 PRK03670 competence damage-ind 34.0 1.5E+02 0.0032 29.1 7.2 63 12-74 2-71 (252)
309 PRK09701 D-allose transporter 33.1 3.1E+02 0.0067 26.8 9.5 60 11-72 25-91 (311)
310 PF00994 MoCF_biosynth: Probab 33.0 47 0.001 29.1 3.3 49 27-75 15-68 (144)
311 COG4917 EutP Ethanolamine util 32.4 60 0.0013 29.0 3.7 50 8-61 89-141 (148)
312 cd06288 PBP1_sucrose_transcrip 32.1 1.2E+02 0.0026 28.3 6.2 59 13-72 2-65 (269)
313 cd06287 PBP1_LacI_like_8 Ligan 31.8 2.4E+02 0.0053 26.8 8.4 48 23-72 18-65 (269)
314 COG4090 Uncharacterized protei 31.7 66 0.0014 28.7 3.8 14 61-74 83-96 (154)
315 TIGR01715 phage_lam_T phage ta 31.5 43 0.00094 28.2 2.6 21 384-404 7-27 (100)
316 PRK11790 D-3-phosphoglycerate 31.1 1.1E+02 0.0025 31.9 6.3 62 5-77 5-67 (409)
317 cd06311 PBP1_ABC_sugar_binding 30.6 2.9E+02 0.0063 25.9 8.7 58 13-72 2-69 (274)
318 PRK00549 competence damage-ind 30.4 1.7E+02 0.0036 30.8 7.4 63 12-74 2-70 (414)
319 PF09075 STb_secrete: Heat-sta 30.3 15 0.00032 25.8 -0.3 17 126-142 31-47 (48)
320 COG0036 Rpe Pentose-5-phosphat 29.0 1.3E+02 0.0028 29.1 5.6 57 34-96 101-158 (220)
321 PTZ00254 40S ribosomal protein 28.7 2.2E+02 0.0048 28.0 7.4 18 114-131 131-148 (249)
322 PLN02404 6,7-dimethyl-8-ribity 28.2 3E+02 0.0064 24.7 7.5 61 9-71 6-74 (141)
323 cd06313 PBP1_ABC_sugar_binding 27.7 3E+02 0.0065 26.0 8.2 49 24-72 11-64 (272)
324 cd06280 PBP1_LacI_like_4 Ligan 27.5 1.5E+02 0.0033 27.6 6.1 58 13-72 2-64 (263)
325 COG1929 Glycerate kinase [Carb 27.3 97 0.0021 32.1 4.8 18 114-131 306-323 (378)
326 PRK11914 diacylglycerol kinase 27.3 3.9E+02 0.0085 26.3 9.2 62 11-73 9-74 (306)
327 TIGR02637 RhaS rhamnose ABC tr 26.8 3.4E+02 0.0073 26.1 8.5 49 24-72 10-65 (302)
328 TIGR00237 xseA exodeoxyribonuc 26.3 2.9E+02 0.0063 29.2 8.4 16 114-129 209-224 (432)
329 PRK15408 autoinducer 2-binding 26.2 3.9E+02 0.0084 26.9 9.0 59 11-71 24-88 (336)
330 cd06167 LabA_like LabA_like pr 26.1 2.7E+02 0.0058 24.0 6.9 65 31-133 54-132 (149)
331 PRK09932 glycerate kinase II; 25.8 1E+02 0.0022 32.2 4.7 18 114-131 306-323 (381)
332 PRK06852 aldolase; Validated 25.3 2.3E+02 0.0051 28.6 7.1 42 33-74 192-240 (304)
333 PRK08883 ribulose-phosphate 3- 25.0 1.3E+02 0.0029 28.7 5.1 40 33-72 97-137 (220)
334 TIGR00045 glycerate kinase. Th 24.9 1E+02 0.0022 32.1 4.6 18 114-131 305-322 (375)
335 PF00781 DAGK_cat: Diacylglyce 24.4 2.9E+02 0.0062 23.5 6.7 58 12-72 1-63 (130)
336 cd06304 PBP1_BmpA_like Peripla 23.9 1.8E+02 0.0038 27.4 5.8 60 12-72 1-65 (260)
337 TIGR02405 trehalos_R_Ecol treh 23.6 2.5E+02 0.0054 27.3 6.9 60 11-72 60-124 (311)
338 cd06307 PBP1_uncharacterized_s 23.4 3.4E+02 0.0074 25.4 7.7 59 12-72 1-67 (275)
339 cd06275 PBP1_PurR Ligand-bindi 23.0 2.1E+02 0.0045 26.6 6.1 58 13-72 2-64 (269)
340 cd02922 FCB2_FMN Flavocytochro 23.0 3.5E+02 0.0077 27.7 8.0 39 33-71 203-242 (344)
341 PRK09739 hypothetical protein; 22.9 2.3E+02 0.0051 26.0 6.2 37 11-48 4-40 (199)
342 PRK15395 methyl-galactoside AB 22.8 6E+02 0.013 25.1 9.6 63 8-72 22-90 (330)
343 PRK11197 lldD L-lactate dehydr 22.3 2.5E+02 0.0055 29.3 6.9 38 34-71 236-274 (381)
344 PF04659 Arch_fla_DE: Archaeal 22.1 59 0.0013 27.4 1.8 47 369-415 7-57 (99)
345 PF13380 CoA_binding_2: CoA bi 22.0 2.3E+02 0.005 24.0 5.5 90 32-135 17-114 (116)
346 TIGR02690 resist_ArsH arsenica 22.0 3.1E+02 0.0066 26.3 6.9 61 11-72 27-99 (219)
347 PRK10423 transcriptional repre 21.2 3.1E+02 0.0068 26.5 7.1 60 11-72 57-121 (327)
348 PF00834 Ribul_P_3_epim: Ribul 21.0 2.5E+02 0.0054 26.5 6.0 40 33-72 96-136 (201)
349 PRK10936 TMAO reductase system 21.0 7.9E+02 0.017 24.3 10.1 61 10-72 46-113 (343)
350 PF02575 YbaB_DNA_bd: YbaB/Ebf 20.7 4.4E+02 0.0096 21.0 7.7 34 218-258 21-54 (93)
351 cd06291 PBP1_Qymf_like Ligand 20.6 2.8E+02 0.006 25.8 6.3 58 13-72 2-64 (265)
352 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.4 3.6E+02 0.0078 22.3 6.4 19 114-132 63-81 (126)
353 PF09822 ABC_transp_aux: ABC-t 20.3 4.1E+02 0.0089 25.6 7.6 60 8-73 144-207 (271)
No 1
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=100.00 E-value=5.1e-49 Score=371.39 Aligned_cols=237 Identities=35% Similarity=0.543 Sum_probs=207.8
Q ss_pred CCCcEEEEEecccc----CcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCcccc
Q 041791 8 MILPRVLIVSRRTV----RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAE 83 (421)
Q Consensus 8 ~~~P~igI~~~~~~----~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~ 83 (421)
|.+|+|||++..-. ..+.-..|+...|++++..+|+.|+++|...+.+.+...++.+||||||||.|+||..|+++
T Consensus 1 ~~kpvIGIt~~~~~~~~~~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee 80 (243)
T COG2071 1 MSKPVIGITADLIQEIVGFDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEE 80 (243)
T ss_pred CCCCEEEEecchhccccccCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCC
Confidence 57899999997643 24455788999999999999999999997767788888899999999999999999999998
Q ss_pred ccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCcee
Q 041791 84 LSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRV 163 (421)
Q Consensus 84 ~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v 163 (421)
.. +.+..+++.||.+|+++++.|+++++||||||||+|+||+++||+++++++...+ .+
T Consensus 81 ~~--------------~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q~i~~~~~-------~~ 139 (243)
T COG2071 81 PS--------------EKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQDISEQPG-------HI 139 (243)
T ss_pred CC--------------cccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeehhhhcccc-------cc
Confidence 74 5667799999999999999999999999999999999999999999998864332 45
Q ss_pred eeccccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCC
Q 041791 164 VHMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEG 243 (421)
Q Consensus 164 ~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~ 243 (421)
.|..+.+.....|.|.+.++|.|+++++.. .+.|||+|+|++++|+++++++|+++||.||||+.++ +
T Consensus 140 ~H~~~~~~~~~~H~V~i~~~s~La~i~g~~------~~~VNS~HhQaIk~La~~L~V~A~a~DG~VEAie~~~------~ 207 (243)
T COG2071 140 DHRQPNPVHIESHEVHIEPGSKLAKILGES------EFMVNSFHHQAIKKLAPGLVVEARAPDGTVEAVEVKN------D 207 (243)
T ss_pred cccCCCCcccceeEEEecCCccHHHhcCcc------ceeecchHHHHHHHhCCCcEEEEECCCCcEEEEEecC------C
Confidence 676666666668999999999999999862 2899999999999999999999999999999999986 4
Q ss_pred CcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 041791 244 KFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAY 283 (421)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~ 283 (421)
.|++|||||||+.....+ .+..||+.|+++++.+
T Consensus 208 ~fvlGVQWHPE~~~~~~~------~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 208 AFVLGVQWHPEYLVDTNP------LSLALFEAFVNACKKH 241 (243)
T ss_pred ceEEEEecChhhhccCCh------HHHHHHHHHHHHHHhh
Confidence 899999999999986553 3689999999999865
No 2
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=100.00 E-value=2.3e-42 Score=335.51 Aligned_cols=238 Identities=26% Similarity=0.393 Sum_probs=188.1
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCC-CCCCCCcccccc
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGE-DIDPSLYDAELS 85 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~-didp~~y~~~~~ 85 (421)
|.+|+|||+++.........+++...|++++.++|+.|+++|+.. +.+.+.+.++.+|||||+||+ |++|..|+++..
T Consensus 5 m~~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~ 84 (254)
T PRK11366 5 MNNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGD 84 (254)
T ss_pred CCCCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCC
Confidence 468999999865433333457899999999999999999999753 344555667789999999996 999999988642
Q ss_pred CCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeee
Q 041791 86 GFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVH 165 (421)
Q Consensus 86 ~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H 165 (421)
....++.||.+|+++++++++.++||||||+|||+||+++||++++++.. .. ....|
T Consensus 85 ----------------~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~-~~------~~~~h 141 (254)
T PRK11366 85 ----------------EPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCE-QP------ELLEH 141 (254)
T ss_pred ----------------CCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccc-cc------ccccc
Confidence 12357889999999999999999999999999999999999999988521 11 01122
Q ss_pred cccc-----CCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCC
Q 041791 166 MNYE-----NYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNP 240 (421)
Q Consensus 166 ~~~~-----~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~ 240 (421)
.... .....+|.|.+.+++.+..+++.. ..+.||++|+++|+.+|++++++|+++||.||||++++
T Consensus 142 ~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~-----~~~~Vns~H~q~V~~l~~gl~v~A~s~dg~ieAie~~~---- 212 (254)
T PRK11366 142 REDPELPVEQQYAPSHEVQVEEGGLLSALLPEC-----SNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVIN---- 212 (254)
T ss_pred ccCCccccccccCCceEEEECCCCcHHHhcCCC-----ceEEeehHHHHHHhhcccceEEEEEcCCCcEEEEEeCC----
Confidence 2111 112346899999888888877421 26789999999999999999999999999999999986
Q ss_pred CCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 041791 241 QEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEK 285 (421)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~ 285 (421)
+++++|||||||+..+..+. ..++|++|+++|+++..
T Consensus 213 --~~~~~GVQwHPE~~~~~~~~------~~~lf~~fv~~~~~~~~ 249 (254)
T PRK11366 213 --HPFALGVQWHPEWNSSEYAL------SRILFEGFITACQHHIA 249 (254)
T ss_pred --CCCEEEEEeCCCcCCCCCch------HHHHHHHHHHHHHHHHH
Confidence 35679999999998765542 36899999999987654
No 3
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=100.00 E-value=3.1e-43 Score=334.23 Aligned_cols=210 Identities=39% Similarity=0.543 Sum_probs=160.2
Q ss_pred cEEEEEecccc-----CcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCC-CCCCCCccccc
Q 041791 11 PRVLIVSRRTV-----RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGE-DIDPSLYDAEL 84 (421)
Q Consensus 11 P~igI~~~~~~-----~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~-didp~~y~~~~ 84 (421)
|+|||++++.. ......+|+..+|+++++++|++|+++|+..+.+.+...++.+||||||||. |++|..|+++.
T Consensus 1 PvIGI~~~~~~~~~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~ 80 (217)
T PF07722_consen 1 PVIGITAQPSESDSSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEP 80 (217)
T ss_dssp -EEEEE-EE----SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---
T ss_pred CEEEEeCCccccccCCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcc
Confidence 89999999842 1234467999999999999999999999998888999999999999999999 99999999875
Q ss_pred cCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceee
Q 041791 85 SGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVV 164 (421)
Q Consensus 85 ~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~ 164 (421)
. +.....+..||.+|+++++.++++++||||||+|||+||+++||+++++.....+ ...
T Consensus 81 ~--------------~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~-------~~~ 139 (217)
T PF07722_consen 81 S--------------PESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPG-------FPD 139 (217)
T ss_dssp B--------------TTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS--------EEE
T ss_pred c--------------ccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcC-------ccc
Confidence 3 3445678999999999999999999999999999999999999999998743222 112
Q ss_pred eccccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCC
Q 041791 165 HMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGK 244 (421)
Q Consensus 165 H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~ 244 (421)
|.... .....|.|.+.+++.|.++++.. .+.||++|||+|+.|+++|+++|++.||.||||+..+ ++
T Consensus 140 ~~~~~-~~~~~h~v~i~~~s~l~~~~~~~------~~~vns~Hhq~v~~l~~~l~v~A~s~Dg~iEaie~~~------~~ 206 (217)
T PF07722_consen 140 HRQHP-QDFPSHPVRIVPGSLLAKILGSE------EIEVNSFHHQAVKPLGEGLRVTARSPDGVIEAIESPE------HK 206 (217)
T ss_dssp CEE-S--TS--EEEEEETTSTCCCTSHHC------TEEEEEEECEEECCHHCCEEEEEEECTSSEEEEEECC------ES
T ss_pred ccccc-cccccccceeccCchHHHHhCcC------cceeecchhhhhhccCCCceEEEEecCCcEEEEEEcC------CC
Confidence 21111 14568999999999999999732 7899999999999999999999999999999999987 45
Q ss_pred -cEEEEccccC
Q 041791 245 -FIMGLQFHPE 254 (421)
Q Consensus 245 -~i~GvQFHPE 254 (421)
|++|||||||
T Consensus 207 ~~~~GvQwHPE 217 (217)
T PF07722_consen 207 YPILGVQWHPE 217 (217)
T ss_dssp S-EEEESS-CC
T ss_pred CCEEEEEeCCC
Confidence 8999999999
No 4
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=339.32 Aligned_cols=271 Identities=24% Similarity=0.341 Sum_probs=216.9
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
..-+|+|.+.||.+.++||+...+.. .+|||+|++||. ||+.+..
T Consensus 184 ~N~IRcL~~RGa~vtVvPw~~~i~~~-----~yDGlflSNGPG-dPe~~~~----------------------------- 228 (1435)
T KOG0370|consen 184 YNQIRCLVKRGAEVTVVPWDYPIAKE-----EYDGLFLSNGPG-DPELCPL----------------------------- 228 (1435)
T ss_pred HHHHHHHHHhCceEEEecCCcccccc-----ccceEEEeCCCC-CchhhHH-----------------------------
Confidence 34689999999999999998876542 699999999985 5554311
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcc
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFR 191 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~ 191 (421)
-..-++..++.++|++|||+|||+|+.|.|++.+++ .+|++ |+.+++... .-+
T Consensus 229 -~v~~vr~lL~~~~PvfGIClGHQllA~AaGakT~Km---KyGNR----------------GhNiP~~~~-------~tG 281 (1435)
T KOG0370|consen 229 -LVQNVRELLESNVPVFGICLGHQLLALAAGAKTYKM---KYGNR----------------GHNIPCTCR-------ATG 281 (1435)
T ss_pred -HHHHHHHHHhCCCCeEEEehhhHHHHHhhCCceEEe---ecccc----------------CCCccceec-------cCc
Confidence 123345666778999999999999999999999988 46532 112222221 112
Q ss_pred cccccCceeEEEecccccccc--ccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCch
Q 041791 192 DSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPG 268 (421)
Q Consensus 192 ~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (421)
+ .+...++|+++|+ .||.+|+.++++ +|+..|++.|.. .|++++|||||.+. ++.|
T Consensus 282 r-------c~ITSQNHGYAVD~~tLp~gWk~lFvN~NDgSNEGI~Hss-------~P~fSvQFHPEat~--GP~D----- 340 (1435)
T KOG0370|consen 282 R-------CFITSQNHGYAVDPATLPAGWKPLFVNANDGSNEGIMHSS-------KPFFSVQFHPEATP--GPHD----- 340 (1435)
T ss_pred e-------EEEEecCCceeeccccccCCCchheeecccCCCceEecCC-------CCceeeecCCcCCC--CCcc-----
Confidence 2 6677899999996 599999999997 899999999987 79999999999775 5433
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCCcccchhhhccCeeeE-eh--hhh------------h-hhhhccCCCc-----
Q 041791 269 CKSAYQEFVKAVIAYEKKLSCSASIPKSVKLDQEIEKKRKVIV-RS--FSI------------A-RNMYSSGGGK----- 327 (421)
Q Consensus 269 ~~~lf~~Fv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvl~-~s--~s~------------a-~~~~~~~~~~----- 327 (421)
+..+|+.|++.+++.+.....+ .++..+........+||||| +| ||| | |+|+|++++|
T Consensus 341 TeyLFDiFi~lvkk~kst~tAs-~~~t~~~~~~~~~~~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNP 419 (1435)
T KOG0370|consen 341 TEYLFDVFIELVKKSKSTPTAS-AFITEPAKAAPRVEVKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINP 419 (1435)
T ss_pred hHHHHHHHHHHHHHHhcCCccc-ccccccccccccccccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECC
Confidence 6889999999998887755432 23334444555667888888 88 887 6 9999999999
Q ss_pred ----------CCCCccccccchhhhc----------------cccccchHHH--H--HHhhcCceecccchhHHHHHhhH
Q 041791 328 ----------VSGQESELQVGAEFLE----------------ANTALSLQQE--N--RLKQMGATVRNASTYIERLKMNE 377 (421)
Q Consensus 328 ----------~~~~~~~~~~~~~~~~----------------~~~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 377 (421)
++|++||||++++|+. |||||+++.| + .|++.|++| +||+|++|+++|
T Consensus 420 NIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkv--Lgt~i~ti~tte 497 (1435)
T KOG0370|consen 420 NIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKV--LGTPIQTIITTE 497 (1435)
T ss_pred cccccccccccceEEEEeecCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccchhh--hCCCcccceeec
Confidence 6999999999999998 8999999999 4 599999999 999999999999
Q ss_pred HHHHHHHHHHh
Q 041791 378 ERERVARNIIG 388 (421)
Q Consensus 378 ~~~~~~~~~~~ 388 (421)
||+.||++|=+
T Consensus 498 dr~lfa~am~e 508 (1435)
T KOG0370|consen 498 DRDLFARALNE 508 (1435)
T ss_pred cHHHHHHHHHh
Confidence 99999999753
No 5
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=100.00 E-value=4.3e-32 Score=252.47 Aligned_cols=187 Identities=42% Similarity=0.687 Sum_probs=154.1
Q ss_pred EEEEeccccCc--ccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 13 VLIVSRRTVRK--NKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 13 igI~~~~~~~~--~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
|||+++..... ....+++..+++++|+.+|+.++++|++.+.+.+.+.++.+||||||||++.+|..|+++..
T Consensus 1 ~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~----- 75 (189)
T cd01745 1 IGITARLREEEGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPH----- 75 (189)
T ss_pred CEEcCccccccCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCC-----
Confidence 57888765433 34489999999999999999999999887666666667789999999999888887766442
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
+.....++.|+..+..+++.+++.++|+||||+|||+|+.++||++.++
T Consensus 76 ---------~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~---------------------- 124 (189)
T cd01745 76 ---------PELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQD---------------------- 124 (189)
T ss_pred ---------cccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC----------------------
Confidence 3334567788888999999999999999999999999999999986532
Q ss_pred CCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 041791 171 YDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQ 250 (421)
Q Consensus 171 ~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQ 250 (421)
. .++++|++.|..+|++++++|+++||.|+++++++ |.+++|+|
T Consensus 125 ----~--------------------------~v~~~H~~~v~~~~~~~~vla~~~d~~vea~~~~~------~~~~~gvQ 168 (189)
T cd01745 125 ----I--------------------------RVNSLHHQAIKRLADGLRVEARAPDGVIEAIESPD------RPFVLGVQ 168 (189)
T ss_pred ----C--------------------------ceechHHHHHhhcCCCCEEEEECCCCcEEEEEeCC------CCeEEEEe
Confidence 0 26789999999999999999999999999999985 36899999
Q ss_pred cccCccCCCCCCCCCCchhhHHHHHHH
Q 041791 251 FHPERMRNQDSDNFDYPGCKSAYQEFV 277 (421)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv 277 (421)
||||+..+.... ..++|++|+
T Consensus 169 fHPE~~~~~~~~------~~~if~~f~ 189 (189)
T cd01745 169 WHPEWLADTDPD------SLKLFEAFV 189 (189)
T ss_pred cCCCcCcccCch------HhHHHHHhC
Confidence 999998761111 478999984
No 6
>PRK06186 hypothetical protein; Validated
Probab=99.97 E-value=1.5e-30 Score=247.53 Aligned_cols=219 Identities=15% Similarity=0.140 Sum_probs=148.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh--hhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL--ESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~--~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+|++|.-++...+.|.+ +.++...+-...+..+.+...+.+ ++. ..|+++|||++|||.. ....
T Consensus 3 ~IalVGKY~~~~daY~S-v~eal~ha~~~~~~~~~i~wi~s~--~l~~~~~l~~~dgilvpgGfg-------~rg~---- 68 (229)
T PRK06186 3 RIALVGDYNPDVTAHQA-IPLALDLAAAVLGLPVDYEWLPTP--EITDPEDLAGFDGIWCVPGSP-------YRND---- 68 (229)
T ss_pred EEEEEECCcCCcHHHHH-HHHHHHHHHHhcCCeeEEEEEchh--hcCChhhHhhCCeeEeCCCCC-------cccH----
Confidence 67777766443333222 112222222234555444433322 221 3577899999999953 2111
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcc--cccc-hhhhccccCCCceeeec
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTL--YQDI-EKEISKNCSLGQRVVHM 166 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v--~~~~-~~e~g~~~~~~~~v~H~ 166 (421)
...+.++++|+++++|+||||+|||++++++++++ +++. +.|+.... ...+...
T Consensus 69 ---------------------~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~--~~pvi~~ 125 (229)
T PRK06186 69 ---------------------DGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEG--DRPVIAP 125 (229)
T ss_pred ---------------------hHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCC--CCCEEEE
Confidence 23468899999999999999999999888887776 4443 23443211 1112222
Q ss_pred cccCCCCceeEEEEccCCcchhhcccccccC--ceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCC
Q 041791 167 NYENYDGHRHLVKVVEDTPLHQWFRDSLEEN--KMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGK 244 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~--~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~ 244 (421)
.+.......|++.+.++|.++++|+.....+ ++.+.||+.|+++++ +.|++++|+++||.||+||.++ |+
T Consensus 126 ~~~~~~~~~h~v~l~~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i~--~~GL~vsa~s~DG~iEaiE~~~------hp 197 (229)
T PRK06186 126 LSCSLVEKTGDIRLRPGSLIARAYGTLEIEEGYHCRYGVNPEFVAALE--SGDLRVTGWDEDGDVRAVELPG------HP 197 (229)
T ss_pred CccccccCceEEEECCCCHHHHHhCCCeeeeeccccEEECHHHHHHHh--cCCeEEEEEcCCCCEEEEEeCC------CC
Confidence 1122233468999999999999998753322 456789999999986 8999999999999999999987 68
Q ss_pred cEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 041791 245 FIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIA 282 (421)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~ 282 (421)
|++|||||||+.+.+.. ..++|..|+++|.+
T Consensus 198 f~lGVQwHPE~~s~~~~-------~~~LF~~Fv~aa~~ 228 (229)
T PRK06186 198 FFVATLFQPERAALAGR-------PPPLVRAFLRAARA 228 (229)
T ss_pred cEEEEeCCCCccCCCCC-------CCHHHHHHHHHHhc
Confidence 99999999999886443 46899999998863
No 7
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.97 E-value=1.8e-29 Score=234.16 Aligned_cols=170 Identities=25% Similarity=0.394 Sum_probs=135.5
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
..+++++.|+.+.++|++.+++++.+. ++||||||||+. +.|+.. .
T Consensus 14 l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~---~~~~~~-----------------------------~ 59 (188)
T TIGR00888 14 IARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPS---SVYAEN-----------------------------A 59 (188)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCC---CcCcCC-----------------------------c
Confidence 356788999999999998776666532 357999999973 112221 1
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcccc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRDS 193 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~ 193 (421)
..+++.+++.++|+||||+|||+|+.++||++.+....++ +|+++.+.+.++++..+++
T Consensus 60 ~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~~~~--------------------g~~~v~~~~~~~l~~~~~~- 118 (188)
T TIGR00888 60 PRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREY--------------------GKAELEILDEDDLFRGLPD- 118 (188)
T ss_pred hHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCCccc--------------------eeEEEEEecCCHhhcCCCC-
Confidence 2456777889999999999999999999999876542222 3788888877778777765
Q ss_pred cccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHH
Q 041791 194 LEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAY 273 (421)
Q Consensus 194 l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf 273 (421)
.+.++.+|++.+..+|++++++|+++++.++++++++ .+++|+|||||++.++. ..++|
T Consensus 119 ------~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~-------~~~~g~QfHPE~~~~~~--------g~~i~ 177 (188)
T TIGR00888 119 ------ESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEE-------KPIYGVQFHPEVTHTEY--------GNELL 177 (188)
T ss_pred ------CcEEEeEccceeecCCCCCEEEEECCCCCeEEEEECC-------CCEEEEeeCCccCCChh--------hHHHH
Confidence 5778899999998899999999999999999999985 68999999999987543 37899
Q ss_pred HHHHHH
Q 041791 274 QEFVKA 279 (421)
Q Consensus 274 ~~Fv~a 279 (421)
++|+.+
T Consensus 178 ~~f~~~ 183 (188)
T TIGR00888 178 ENFVYD 183 (188)
T ss_pred HHHHHH
Confidence 999983
No 8
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.97 E-value=1e-29 Score=236.35 Aligned_cols=182 Identities=18% Similarity=0.291 Sum_probs=136.4
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
|+|+.+.+++...+ +++|.+.|+.+.+++++. +.+++.. .++|||||+|||. +|..
T Consensus 2 il~idn~Dsft~nl--------~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg-~p~~------------ 58 (187)
T PRK08007 2 ILLIDNYDSFTWNL--------YQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPC-TPDE------------ 58 (187)
T ss_pred EEEEECCCccHHHH--------HHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCC-ChHH------------
Confidence 78888887765554 345677899999998764 4444432 2689999999984 2311
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
+..+..+++. ++.++|+||||+|||+|+.++||++.+....+.|
T Consensus 59 ------------------~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~~~~g----------------- 102 (187)
T PRK08007 59 ------------------AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG----------------- 102 (187)
T ss_pred ------------------CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCCcccC-----------------
Confidence 0113455665 4678999999999999999999999876533332
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
.++++....+ .++..++. .+.+++||++.|+ .+|++++++|+++||.++|+++++ .+++||
T Consensus 103 --~~~~v~~~~~-~l~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~-------~~i~Gv 165 (187)
T PRK08007 103 --KTSPITHNGE-GVFRGLAN-------PLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQ-------WDLEGV 165 (187)
T ss_pred --CceEEEECCC-CcccCCCC-------CcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCC-------CCEEEE
Confidence 2445554433 35555544 5789999999995 799999999999999999999986 789999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
|||||+..+..+ ..+|++|++
T Consensus 166 QfHPE~~~t~~G--------~~il~nFl~ 186 (187)
T PRK08007 166 QFHPESILSEQG--------HQLLANFLH 186 (187)
T ss_pred EeCCcccCCcch--------HHHHHHHhh
Confidence 999999776554 689999985
No 9
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=9.7e-29 Score=234.43 Aligned_cols=189 Identities=20% Similarity=0.281 Sum_probs=140.7
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-hhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-VHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
+|+|+...+. ....+.+++.+.|+.+++++++.+ .....+.++.+|||||+||+. +|.
T Consensus 2 ~ilv~d~~~~--------~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~-~~~------------ 60 (214)
T PRK07765 2 RILVVDNYDS--------FVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPG-TPE------------ 60 (214)
T ss_pred eEEEEECCCc--------HHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCC-Chh------------
Confidence 5677776632 222567888999999999998753 223344456899999999973 221
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
++..+..+++++++.++|+||||+|||+|+.++||++.+....+.|
T Consensus 61 ------------------~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~~~g---------------- 106 (214)
T PRK07765 61 ------------------RAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPELLHG---------------- 106 (214)
T ss_pred ------------------hcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCCCccC----------------
Confidence 1234568899999999999999999999999999999876432222
Q ss_pred CCCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 041791 171 YDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMG 248 (421)
Q Consensus 171 ~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~G 248 (421)
..+.+.+...+ ++...++ .+.++++|++.|. .+|++++++|++++|.++|+++++ .+++|
T Consensus 107 ---~~~~v~~~~~~-~~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~-------~~i~g 168 (214)
T PRK07765 107 ---KTSSVHHTGVG-VLAGLPD-------PFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRE-------LPIHG 168 (214)
T ss_pred ---ceeEEEECCCc-cccCCCC-------ccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCC-------CCEEE
Confidence 13445554444 3333333 5789999999995 799999999999999999999986 57999
Q ss_pred EccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 249 LQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
+|||||+..+..+ ..++.+|++.|.
T Consensus 169 vQfHPE~~~t~~g--------~~~l~~f~~~~~ 193 (214)
T PRK07765 169 VQFHPESVLTEGG--------HRMLANWLTVCG 193 (214)
T ss_pred EeeCCCcccCcch--------HHHHHHHHHHhc
Confidence 9999998765443 578888887663
No 10
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.96 E-value=6.1e-29 Score=228.48 Aligned_cols=168 Identities=26% Similarity=0.428 Sum_probs=130.7
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
+.++|+.+|+.++++|+..+.+ ...++.+||||||||+. +.|+...
T Consensus 14 ~~~~l~~~G~~~~~~~~~~~~~--~~~~~~~dgvIl~Gg~~---~~~~~~~----------------------------- 59 (181)
T cd01742 14 IARRVRELGVYSEILPNTTPLE--EIKLKNPKGIILSGGPS---SVYEEDA----------------------------- 59 (181)
T ss_pred HHHHHHhcCceEEEecCCCChh--hhcccCCCEEEECCCcc---ccccccc-----------------------------
Confidence 5678899999999999876544 22456899999999973 1122110
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcccc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRDS 193 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~ 193 (421)
..+.++.++.++|+||||+|||+|+.++||++.+....++ +++.+.+.++++++..++.
T Consensus 60 ~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~--------------------G~~~v~~~~~~~l~~~~~~- 118 (181)
T cd01742 60 PRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDKREY--------------------GKAEIEIDDSSPLFEGLPD- 118 (181)
T ss_pred chhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCCCcc--------------------eEEEEEecCCChhhcCCCC-
Confidence 0123444567999999999999999999999876542222 3777777777778877765
Q ss_pred cccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHH
Q 041791 194 LEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAY 273 (421)
Q Consensus 194 l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf 273 (421)
.+.++++|++.|..+|++++++|+++++.|+++++++ .++||+|||||++.+..+ ..+|
T Consensus 119 ------~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~-------~~~~g~QfHPE~~~~~~g--------~~ll 177 (181)
T cd01742 119 ------EQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEE-------KKIYGVQFHPEVTHTEKG--------KEIL 177 (181)
T ss_pred ------ceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCC-------CcEEEEEcCCccccCcCh--------HHHH
Confidence 5788999999998999999999999999999999975 689999999999976443 6889
Q ss_pred HHHH
Q 041791 274 QEFV 277 (421)
Q Consensus 274 ~~Fv 277 (421)
++|+
T Consensus 178 ~~f~ 181 (181)
T cd01742 178 KNFL 181 (181)
T ss_pred HhhC
Confidence 8884
No 11
>PRK00758 GMP synthase subunit A; Validated
Probab=99.96 E-value=6.4e-29 Score=229.73 Aligned_cols=168 Identities=25% Similarity=0.373 Sum_probs=129.2
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCc-CEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPI-HGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~-DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
..+++++.|+.++++++..+.+++ +.+ ||||||||++++ |+ .
T Consensus 15 i~~~l~~~g~~~~~~~~~~~~~~l----~~~~dgivi~Gg~~~~-----------------~~----------~------ 57 (184)
T PRK00758 15 IHRTLRYLGVDAKIIPNTTPVEEI----KAFEDGLILSGGPDIE-----------------RA----------G------ 57 (184)
T ss_pred HHHHHHHcCCcEEEEECCCCHHHH----hhcCCEEEECCCCChh-----------------hc----------c------
Confidence 356778899999999877655544 346 999999998431 00 0
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhccc
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRD 192 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~ 192 (421)
.+.+...+.++|+||||+|||+|+.++||++.+....++ +++.+.+.+.+.++..+++
T Consensus 58 --~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~~~~--------------------g~~~i~~~~~~~l~~~~~~ 115 (184)
T PRK00758 58 --NCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEYGEY--------------------ALVEVEILDEDDILKGLPP 115 (184)
T ss_pred --ccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCCCcee--------------------eeEEEEEcCCChhhhCCCC
Confidence 011122256899999999999999999999876532233 2677877766666666655
Q ss_pred ccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHH
Q 041791 193 SLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSA 272 (421)
Q Consensus 193 ~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~l 272 (421)
.+.++++|++.|..+|++++++|++++|.|+|+++++ .+++|+|||||++.+.. ...+
T Consensus 116 -------~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~-------~~~~g~QfHPE~~~~~~--------g~~l 173 (184)
T PRK00758 116 -------EIRVWASHADEVKELPDGFEILARSDICEVEAMKHKE-------KPIYGVQFHPEVAHTEY--------GEEI 173 (184)
T ss_pred -------CcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEECC-------CCEEEEEcCCccCCCch--------HHHH
Confidence 6789999999998999999999999999999999875 67999999999987543 3789
Q ss_pred HHHHHHHHHH
Q 041791 273 YQEFVKAVIA 282 (421)
Q Consensus 273 f~~Fv~a~~~ 282 (421)
|++|++.|.+
T Consensus 174 ~~~f~~~~~~ 183 (184)
T PRK00758 174 FKNFLEICGK 183 (184)
T ss_pred HHHHHHHHcc
Confidence 9999987654
No 12
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.96 E-value=1.4e-28 Score=228.67 Aligned_cols=184 Identities=22% Similarity=0.371 Sum_probs=134.8
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
|+|+.+.+++.. ..++++.++|..+.++|++. +.+.+ +.+ .+|||||+||+. +| ++..
T Consensus 2 iliid~~d~f~~--------~i~~~l~~~g~~~~v~~~~~~~~~~~-~~~-~~dglIlsgGpg-~~--~d~~-------- 60 (189)
T PRK05670 2 ILLIDNYDSFTY--------NLVQYLGELGAEVVVYRNDEITLEEI-EAL-NPDAIVLSPGPG-TP--AEAG-------- 60 (189)
T ss_pred EEEEECCCchHH--------HHHHHHHHCCCcEEEEECCCCCHHHH-HhC-CCCEEEEcCCCC-Ch--HHcc--------
Confidence 788887755332 34677888999999999864 44443 333 389999999983 12 1100
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
....+++. ...++|+||||+|||+|+.++||++.+....+.|
T Consensus 61 --------------------~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~~~~g----------------- 102 (189)
T PRK05670 61 --------------------ISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKEIMHG----------------- 102 (189)
T ss_pred --------------------hHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCCcccC-----------------
Confidence 01245554 3578999999999999999999998865321121
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
.++.+. ..+++++..++. .+.++++|++.|. .+|.+++++|++++|.++|+++++ .++||+
T Consensus 103 --~~~~v~-~~~~~l~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~-------~~~~gv 165 (189)
T PRK05670 103 --KTSPIE-HDGSGIFAGLPN-------PFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKE-------LPIYGV 165 (189)
T ss_pred --ceeEEE-eCCCchhccCCC-------CcEEEcchhheeccccCCCceEEEEEeCCCcEEEEEECC-------CCEEEE
Confidence 234454 345667666654 5789999999995 499999999999999999999976 679999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVKAV 280 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~ 280 (421)
|||||+..+.. ...+|++|++.+
T Consensus 166 QfHPE~~~~~~--------g~~i~~~F~~~~ 188 (189)
T PRK05670 166 QFHPESILTEH--------GHKLLENFLELA 188 (189)
T ss_pred eeCCCcCCCcc--------hHHHHHHHHHhh
Confidence 99999975533 479999999875
No 13
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.96 E-value=1.4e-28 Score=228.84 Aligned_cols=182 Identities=19% Similarity=0.288 Sum_probs=135.2
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
|+|+.+.+++... .++++...|+.++++|.+. +.+.+.+. .+|||||+||+. +|..
T Consensus 2 il~id~~dsft~~--------~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg-~p~~------------ 58 (188)
T TIGR00566 2 VLMIDNYDSFTYN--------LVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPC-TPNE------------ 58 (188)
T ss_pred EEEEECCcCHHHH--------HHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCC-Chhh------------
Confidence 7888888765444 3556677899999999653 45555432 589999999983 2210
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
+..+.++++++ ..++|+||||+|||+|+.++||++.+....+.
T Consensus 59 ------------------~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~~~~------------------ 101 (188)
T TIGR00566 59 ------------------AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANTVMH------------------ 101 (188)
T ss_pred ------------------cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCCccc------------------
Confidence 11235677777 67999999999999999999999987532222
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEeccccccc--cccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEE
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGV--KKLAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMG 248 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V--~~L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~G 248 (421)
+.++.|.....+ ++..+.+ .+.++++|++.| ..+|++++++|++.++ .++|+++++ .++||
T Consensus 102 -g~~~~v~~~~~~-~~~~l~~-------~~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~-------~~i~g 165 (188)
T TIGR00566 102 -GKTSEIEHNGAG-IFRGLFN-------PLTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRD-------LPLEG 165 (188)
T ss_pred -cceEEEEECCCc-cccCCCC-------CcEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCC-------CCEEE
Confidence 236677765443 4333332 478999999998 4799999999998764 999999986 67999
Q ss_pred EccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 249 LQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
+|||||+..+..+ ..+|++|++
T Consensus 166 vQfHPE~~~t~~G--------~~il~nfl~ 187 (188)
T TIGR00566 166 VQFHPESILSEQG--------HQLLANFLH 187 (188)
T ss_pred EEeCCCccCCccc--------HHHHHHHHh
Confidence 9999999877554 789999975
No 14
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.96 E-value=2.1e-28 Score=227.77 Aligned_cols=182 Identities=18% Similarity=0.317 Sum_probs=131.3
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
|+|+.+.+++...++ +.|.+.|+.+.+++++. +.+++... .+|||||+|||. +|. +..
T Consensus 2 il~id~~dsf~~nl~--------~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~-~~~--~~~-------- 60 (191)
T PRK06774 2 LLLIDNYDSFTYNLY--------QYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPC-TPN--EAG-------- 60 (191)
T ss_pred EEEEECCCchHHHHH--------HHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCC-ChH--hCC--------
Confidence 688888877655544 44567899999999763 55555432 689999999983 221 110
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
.+..+++. .+.++|+||||+|||+|+.++||++.+....+.|
T Consensus 61 --------------------~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~~~~G----------------- 102 (191)
T PRK06774 61 --------------------ISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQVMHG----------------- 102 (191)
T ss_pred --------------------CchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCcceec-----------------
Confidence 12345554 4679999999999999999999999876432332
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEeccccccc--cccCCCeEEEEEeC-CC---eEEEEEeCCCCCCCCCCc
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGV--KKLAQRFVPMAFAS-DG---LIEGFYDPDAYNPQEGKF 245 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V--~~L~~g~~vla~s~-dg---~ieaie~~~~~~~~~~~~ 245 (421)
+..+.....+++++.++. .+.+++||++.| ..+|++++++|+++ ++ .++++++++ .+
T Consensus 103 ---~~~~~~~~~~~lf~~l~~-------~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~-------~~ 165 (191)
T PRK06774 103 ---KTSAICHSGQGVFRGLNQ-------PLTVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRT-------LP 165 (191)
T ss_pred ---ceEEEEecCchhhcCCCC-------CcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCC-------CC
Confidence 444444445556666554 578999999998 47899999999987 43 466777775 68
Q ss_pred EEEEccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 246 IMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 246 i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
++|+|||||+.++..+ ..+|++|++
T Consensus 166 i~GvQfHPE~~~~~~G--------~~i~~nf~~ 190 (191)
T PRK06774 166 LEGVQFHPESILSEQG--------HQLLDNFLK 190 (191)
T ss_pred EEEEEECCCcCCCccH--------HHHHHHHhh
Confidence 9999999999765443 789999985
No 15
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.96 E-value=4.2e-28 Score=233.12 Aligned_cols=214 Identities=21% Similarity=0.207 Sum_probs=144.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-hh--hhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-HM--LLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~~--l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
++|++|.-++.....+.+++ .....+....++.+.++..+... +. ..+.++.+|||||+||++. +.
T Consensus 1 ~~i~lvg~~~~~~day~s~~-~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~-~~--------- 69 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVL-EALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGI-RG--------- 69 (235)
T ss_pred CEEEEEECCcCCHHHHHHHH-HHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCC-cc---------
Confidence 47888887754333333322 22233344455555544333221 11 1246778999999999842 10
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchh---hhccccCCCceee
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEK---EISKNCSLGQRVV 164 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~---e~g~~~~~~~~v~ 164 (421)
...+..+++++++.++|+||||+|||+|+.++||++.+.... ++.... .+..+.
T Consensus 70 ----------------------~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~ 126 (235)
T cd01746 70 ----------------------VEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDT-PHPVVD 126 (235)
T ss_pred ----------------------hhhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCC-CCCEEE
Confidence 012346788899999999999999999999999998754321 110000 001111
Q ss_pred ec--------cccCCCCceeEEEEccCCcchhhcccccccCceeEEEecccccccc-----c-cCCCeEEEEEeC-CCeE
Q 041791 165 HM--------NYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK-----K-LAQRFVPMAFAS-DGLI 229 (421)
Q Consensus 165 H~--------~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~-----~-L~~g~~vla~s~-dg~i 229 (421)
.. ....++.+.|.|.+.++|.+.++++.. .+.++++|+|+|+ . ++.+++++|++. ||.|
T Consensus 127 ~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~------~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~i 200 (235)
T cd01746 127 LMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKD------EVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLV 200 (235)
T ss_pred ECcccccccccCcccccCceEEEECCCChHHHHhCCC------EEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeE
Confidence 11 012345567999999999999999873 6789999999984 3 489999999998 8999
Q ss_pred EEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHH
Q 041791 230 EGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFV 277 (421)
Q Consensus 230 eaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv 277 (421)
|+++.++ +++++|||||||+...+.. ..++|++|+
T Consensus 201 eaie~~~------~pf~lgvQ~HPE~~~~~~~-------~~~lF~~fv 235 (235)
T cd01746 201 EIVELPD------HPFFVGTQFHPEFKSRPLK-------PHPLFVGFV 235 (235)
T ss_pred EEEEcCC------CCcEEEEECCCCCcCCCCC-------ccHHHHHhC
Confidence 9999987 4677799999999875443 368999985
No 16
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.96 E-value=6.9e-28 Score=222.03 Aligned_cols=165 Identities=25% Similarity=0.405 Sum_probs=125.6
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
.++++++.+|+.++++|++.+.+.+. ...+|||||+||+. +|. ++..
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~dgiil~GG~~-~~~------------------------------~~~~ 57 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTDAEEIL--KLDPDGIFLSNGPG-DPA------------------------------LLDE 57 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCC-Chh------------------------------HhHH
Confidence 46889999999999999887655432 24699999999973 111 1133
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhccc
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRD 192 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~ 192 (421)
+.++++++++.++|+||||+|||+|+.++||++.+.. .+. .+..|++.....+ .
T Consensus 58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~---~~~----------------~g~~~~v~~~~~~-------~ 111 (178)
T cd01744 58 AIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMK---FGH----------------RGSNHPVKDLITG-------R 111 (178)
T ss_pred HHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCC---CCC----------------CCCceeeEEcCCC-------C
Confidence 5678999999999999999999999999999988642 110 1124556543211 1
Q ss_pred ccccCceeEEEecccccccc--ccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchh
Q 041791 193 SLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGC 269 (421)
Q Consensus 193 ~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~ 269 (421)
.+.++++|+++|+ .+|++++++|++ +|+.++++++++ .+++|+|||||+..++.. .
T Consensus 112 -------~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~i~a~~~~~-------~~i~GvQfHPE~~~~~~~-------~ 170 (178)
T cd01744 112 -------VYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRHKD-------LPVFSVQFHPEASPGPHD-------T 170 (178)
T ss_pred -------cEEEEcCceEEEcccccCCceEEEEEECCCCcEEEEEECC-------CCeEEEeeCCCCCCCCCC-------c
Confidence 4568899999995 699999999997 688999999986 679999999999875322 4
Q ss_pred hHHHHHHH
Q 041791 270 KSAYQEFV 277 (421)
Q Consensus 270 ~~lf~~Fv 277 (421)
.++|++|+
T Consensus 171 ~~lf~~f~ 178 (178)
T cd01744 171 EYLFDEFL 178 (178)
T ss_pred hHhHhhhC
Confidence 68999985
No 17
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.96 E-value=2.7e-28 Score=239.31 Aligned_cols=202 Identities=22% Similarity=0.278 Sum_probs=144.6
Q ss_pred EEEEeccccCc---ccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCC-CCCCCCccccccCCC
Q 041791 13 VLIVSRRTVRK---NKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGE-DIDPSLYDAELSGFA 88 (421)
Q Consensus 13 igI~~~~~~~~---~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~-didp~~y~~~~~~~~ 88 (421)
|||++++.... ....+|++++|+++++++|+.+++|+.+.+.+.+.+.|+.+||||++||+ ++++..|..
T Consensus 1 igil~~~~~~~~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~------ 74 (273)
T cd01747 1 IGILTQPVDGAGSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYAR------ 74 (273)
T ss_pred CeEEeeecCccccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccch------
Confidence 79999987432 34468999999999999999988888776667888888999999999997 765433321
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcC-----CCEEEEchhhHHHHHHhCCcccccchhhhccccCCCcee
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCLERN-----IPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRV 163 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~-----iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v 163 (421)
.+..+++.+++.+ +|+||||+|||+|+.++||++.... ...
T Consensus 75 -----------------------~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~--~~~--------- 120 (273)
T cd01747 75 -----------------------TAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLE--ATE--------- 120 (273)
T ss_pred -----------------------HHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccC--CCc---------
Confidence 1245667777654 9999999999999999998642111 010
Q ss_pred eeccccCCCCceeEEEEcc---CCcchhhcccccccC-ceeEEEecccccccc--ccC------CCeEEEEEeCC--C--
Q 041791 164 VHMNYENYDGHRHLVKVVE---DTPLHQWFRDSLEEN-KMEIMVNSYHHQGVK--KLA------QRFVPMAFASD--G-- 227 (421)
Q Consensus 164 ~H~~~~~~~~~~h~V~i~~---~s~L~~~~~~~l~~~-~~~~~V~s~H~~~V~--~L~------~g~~vla~s~d--g-- 227 (421)
..+...+|.+++ ++++++.++.++... .....+..+|+++|. .++ ..|++++++.| |
T Consensus 121 -------~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~ 193 (273)
T cd01747 121 -------ATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVE 193 (273)
T ss_pred -------cccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEEEEEecCCCce
Confidence 011246676654 467777776543221 224567889999984 333 56799998765 5
Q ss_pred eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCch
Q 041791 228 LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPG 268 (421)
Q Consensus 228 ~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (421)
.|.++++.+ .+++|+|||||+..........+++
T Consensus 194 fis~ie~~~-------~pi~gvQFHPEks~few~~~~~~~h 227 (273)
T cd01747 194 FISTVEAYK-------YPIYGVQWHPEKNAFEWKKSSSIPH 227 (273)
T ss_pred EEEEEEecC-------CceEEEecCCCcccccccccCCCCC
Confidence 479999886 6899999999999887765333443
No 18
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.96 E-value=1.4e-27 Score=241.70 Aligned_cols=168 Identities=25% Similarity=0.401 Sum_probs=128.6
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
.++++|+++|+.++++|++.+.+++.+. .+|||||+|||+ ||. ++..
T Consensus 186 ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~pDGIiLSgGPg-dp~------------------------------~~~~ 232 (358)
T TIGR01368 186 NILRRLVKRGCEVTVVPYDTDAEEIKKY--NPDGIFLSNGPG-DPA------------------------------AVEP 232 (358)
T ss_pred HHHHHHHHCCCEEEEEcCCCCHHHHHhh--CCCEEEECCCCC-CHH------------------------------HHHH
Confidence 5899999999999999998776655432 469999999984 221 1234
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhccc
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRD 192 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~ 192 (421)
++++++++++ ++|+||||+|||+|+.++||++++.. +++ ++..|+|...... +
T Consensus 233 ~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~---~gh----------------~G~nhpV~~~~~~-------~ 285 (358)
T TIGR01368 233 AIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMK---FGH----------------RGGNHPVKDLITG-------R 285 (358)
T ss_pred HHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccC---cCc----------------CCCceeeEECCCC-------c
Confidence 5678888887 99999999999999999999988752 331 1224666543211 1
Q ss_pred ccccCceeEEEecccccccc--ccC-CCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCch
Q 041791 193 SLEENKMEIMVNSYHHQGVK--KLA-QRFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPG 268 (421)
Q Consensus 193 ~l~~~~~~~~V~s~H~~~V~--~L~-~g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (421)
.+.++++|+++|+ .++ .+|++++++ +||.||||++++ .++||||||||+...+. +
T Consensus 286 -------v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~-------~pi~gVQfHPE~~~gp~--d----- 344 (358)
T TIGR01368 286 -------VEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKD-------LPVFSVQYHPEASPGPH--D----- 344 (358)
T ss_pred -------EEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECC-------CCEEEEEECCCCCCCCC--C-----
Confidence 3456789999996 456 789999997 789999999997 78999999999986432 2
Q ss_pred hhHHHHHHHHHHH
Q 041791 269 CKSAYQEFVKAVI 281 (421)
Q Consensus 269 ~~~lf~~Fv~a~~ 281 (421)
...+|++|++++.
T Consensus 345 ~~~lF~~F~~~~~ 357 (358)
T TIGR01368 345 TEYLFDEFIDLIK 357 (358)
T ss_pred hHHHHHHHHHHhh
Confidence 4789999998874
No 19
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.96 E-value=1.4e-27 Score=241.91 Aligned_cols=168 Identities=27% Similarity=0.427 Sum_probs=131.5
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
..++++|+++|+.++++|++.+.+++... .+|||||+||+. ||. ++.
T Consensus 189 ~nivr~L~~~G~~v~vvp~~~~~~~i~~~--~~DGIvLSgGPg-dp~------------------------------~~~ 235 (360)
T PRK12564 189 RNILRELAERGCRVTVVPATTTAEEILAL--NPDGVFLSNGPG-DPA------------------------------ALD 235 (360)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHhc--CCCEEEEeCCCC-ChH------------------------------HHH
Confidence 46899999999999999998776665432 699999999973 221 123
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcc
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFR 191 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~ 191 (421)
.+..+++++++.++|+||||+|||+|+.++||++++.. +++ ++..|++..... +
T Consensus 236 ~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~---~gh----------------~G~~~pv~~~~~-------~ 289 (360)
T PRK12564 236 YAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMK---FGH----------------RGANHPVKDLET-------G 289 (360)
T ss_pred HHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccC---CCc----------------cCCceeeEECCC-------C
Confidence 45688999998899999999999999999999988753 331 122466654321 1
Q ss_pred cccccCceeEEEecccccccc--ccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCch
Q 041791 192 DSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPG 268 (421)
Q Consensus 192 ~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (421)
. .+.++++|+++|+ ++|+++++++++ +||.||||++++ .++||||||||....+..
T Consensus 290 ~-------~~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~-------~pi~gVQfHPE~~~gp~d------- 348 (360)
T PRK12564 290 K-------VEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKD-------LPAFSVQYHPEASPGPHD------- 348 (360)
T ss_pred c-------EEEEecCcccEEcccccCCceEEEEEeCCCCcEEEEEECC-------CCEEEEEeCCcCCCCCCC-------
Confidence 1 4567889999995 799999999998 689999999987 679999999999874332
Q ss_pred hhHHHHHHHHH
Q 041791 269 CKSAYQEFVKA 279 (421)
Q Consensus 269 ~~~lf~~Fv~a 279 (421)
...+|++|++.
T Consensus 349 ~~~lF~~F~~~ 359 (360)
T PRK12564 349 SAYLFDEFVEL 359 (360)
T ss_pred HHHHHHHHHHh
Confidence 47899999975
No 20
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.96 E-value=6.7e-28 Score=252.01 Aligned_cols=221 Identities=19% Similarity=0.244 Sum_probs=153.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCC----eEEEEcCCCChh----hhhhhcCCcCEEEECCCCCCCCCCccc
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA----VPVIVPRVTGVH----MLLESFEPIHGVLLCEGEDIDPSLYDA 82 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga----~~vivp~~~~~~----~l~~~l~~~DGVIL~GG~didp~~y~~ 82 (421)
-+|++|.-++.-.+.|. +..++|..+|+ .+.+. |..+.+ ...+.++.+||||||||++ +
T Consensus 289 v~IalVGKY~~l~DaY~-----Sv~eAL~hag~~~~~~v~i~-wIdse~l~~~~~~~~L~~~DGIIlpGGfG-------~ 355 (533)
T PRK05380 289 VTIALVGKYVELPDAYK-----SVIEALKHAGIANDVKVNIK-WIDSEDLEEENVAELLKGVDGILVPGGFG-------E 355 (533)
T ss_pred eEEEEEeCccCCcHHHH-----HHHHHHHHHHHHcCCeeEEE-EEChhhccCcchhhHhhcCCEEEecCCCC-------c
Confidence 46777766543222222 23455665554 33333 332211 1345678999999999953 1
Q ss_pred cccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcc--cccc-hhhhccccCC
Q 041791 83 ELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTL--YQDI-EKEISKNCSL 159 (421)
Q Consensus 83 ~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v--~~~~-~~e~g~~~~~ 159 (421)
.. +..++.++++++++++|+||||+|||+|++++||++ +++. +.|++...+
T Consensus 356 ~~-------------------------~~g~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~- 409 (533)
T PRK05380 356 RG-------------------------IEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTP- 409 (533)
T ss_pred cc-------------------------cccHHHHHHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCC-
Confidence 11 012467889999999999999999999999999999 4554 445542111
Q ss_pred Cceeeeccc--------cCCCCceeEEEEccCCcchhhcccccccC--ceeEEEeccccccccccCCCeEEEEEeCCC-e
Q 041791 160 GQRVVHMNY--------ENYDGHRHLVKVVEDTPLHQWFRDSLEEN--KMEIMVNSYHHQGVKKLAQRFVPMAFASDG-L 228 (421)
Q Consensus 160 ~~~v~H~~~--------~~~~~~~h~V~i~~~s~L~~~~~~~l~~~--~~~~~V~s~H~~~V~~L~~g~~vla~s~dg-~ 228 (421)
+..+.++.. ..++.+.|++.+.++|.++++|+.....+ ++.+.||+.|+++++. .|++++|+++|| .
T Consensus 410 ~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~--~GL~vsa~s~Dggl 487 (533)
T PRK05380 410 HPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEK--AGLVFSGTSPDGRL 487 (533)
T ss_pred CCeEeeccccccccccCCcccccceeEEECCCChHHHHhCCCceeeecccceecCHHHHHHHhh--cCeEEEEEcCCCCc
Confidence 111122211 13455689999999999999998753322 4678899999999976 499999999775 9
Q ss_pred EEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 041791 229 IEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEK 285 (421)
Q Consensus 229 ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~ 285 (421)
||+||.++ |+|++|||||||+.+.+.. ..++|.+|+++|.++++
T Consensus 488 VEaIEl~~------hpfflGVQwHPE~~s~p~~-------~~pLF~~FV~Aa~~~~~ 531 (533)
T PRK05380 488 VEIVELPD------HPWFVGVQFHPEFKSRPRR-------PHPLFAGFVKAALENKK 531 (533)
T ss_pred EEEEEeCC------CCEEEEEeCCCCCCCCCCc-------hHHHHHHHHHHHHHHhh
Confidence 99999987 6889999999999876543 47999999999987654
No 21
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.96 E-value=8.3e-28 Score=224.99 Aligned_cols=185 Identities=17% Similarity=0.311 Sum_probs=135.7
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
|+|+.+.+++...+ +++|.+.|..+.+++.+. +.+++.. ..+|||||+|||. +|. +...
T Consensus 2 il~idn~dsft~nl--------~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~-~p~--~~~~------- 61 (195)
T PRK07649 2 ILMIDNYDSFTFNL--------VQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPC-SPN--EAGI------- 61 (195)
T ss_pred EEEEeCCCccHHHH--------HHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCC-ChH--hCCC-------
Confidence 78888887654443 456788899888888763 3444332 2689999999984 221 1100
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
...+++. .+.++|+||||+|||+|+.++||++.+....+.|
T Consensus 62 ---------------------~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~~~~G----------------- 102 (195)
T PRK07649 62 ---------------------SMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAERLMHG----------------- 102 (195)
T ss_pred ---------------------chHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCCcccC-----------------
Confidence 1233443 3578999999999999999999999876432222
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
.++.+.. .+++++..+++ .+.+++||++.|. .+|++++++|++++|.++|+++++ .++||+
T Consensus 103 --~~~~i~~-~~~~lf~~~~~-------~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~-------~~i~gv 165 (195)
T PRK07649 103 --KTSLMHH-DGKTIFSDIPN-------PFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKT-------LPIEGV 165 (195)
T ss_pred --CeEEEEE-CCChhhcCCCC-------CCEEEEechheEecccCCCCeEEEEEcCCCcEEEEEECC-------CCEEEE
Confidence 2444543 34567766654 6789999999984 699999999999999999999986 679999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
|||||...+..+ ..+|++|++...
T Consensus 166 QFHPE~~~t~~g--------~~il~nfl~~~~ 189 (195)
T PRK07649 166 QFHPESIMTSHG--------KELLQNFIRKYS 189 (195)
T ss_pred EECCCCCCCccH--------HHHHHHHHHHhH
Confidence 999998776543 689999998654
No 22
>CHL00101 trpG anthranilate synthase component 2
Probab=99.96 E-value=6.5e-28 Score=224.61 Aligned_cols=183 Identities=19% Similarity=0.322 Sum_probs=133.5
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
|+|+.+.+++... .+++|++.|..+.+++.+. +.+.+.. ..+|||||+||+. +|. +
T Consensus 2 iliid~~dsft~~--------l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiiisgGpg-~~~--~---------- 58 (190)
T CHL00101 2 ILIIDNYDSFTYN--------LVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIIISPGPG-HPR--D---------- 58 (190)
T ss_pred EEEEECCCchHHH--------HHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEECCCCC-ChH--H----------
Confidence 7888887664332 3567788999999888653 4333321 3699999999983 221 0
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
+..+..+++ +.+.++|+||||+|||+|+.++||++.+....+.|
T Consensus 59 ------------------~~~~~~i~~-~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~g----------------- 102 (190)
T CHL00101 59 ------------------SGISLDVIS-SYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPMHG----------------- 102 (190)
T ss_pred ------------------CcchHHHHH-HhcCCCcEEEEchhHHHHHHHhCCEEEECCCcccC-----------------
Confidence 112334554 45789999999999999999999999876422222
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCc-EEE
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKF-IMG 248 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~-i~G 248 (421)
.+..+. ..+.+++..++. .+.++++|++.|+ .+|.+++++|++++|.++++++++ .+ +||
T Consensus 103 --~~~~~~-~~~~~l~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~-------~~~i~g 165 (190)
T CHL00101 103 --KTSKIY-HNHDDLFQGLPN-------PFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKK-------YKMLRG 165 (190)
T ss_pred --ceeeEe-eCCcHhhccCCC-------ceEEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCC-------CCCEEE
Confidence 233333 344556666654 6789999999995 689999999999999999999986 45 999
Q ss_pred EccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 249 LQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
+|||||+..+..+ ..+|++|++.
T Consensus 166 vQfHPE~~~~~~g--------~~l~~nf~~~ 188 (190)
T CHL00101 166 IQFHPESLLTTHG--------QQILRNFLSL 188 (190)
T ss_pred EEeCCccCCChhH--------HHHHHHHHhh
Confidence 9999999865443 6899999873
No 23
>PLN02347 GMP synthetase
Probab=99.95 E-value=1.2e-27 Score=253.46 Aligned_cols=201 Identities=21% Similarity=0.287 Sum_probs=151.2
Q ss_pred CCcCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCcccc
Q 041791 4 SDLSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAE 83 (421)
Q Consensus 4 ~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~ 83 (421)
+.......+|+|+...+.. . ....+.++++|+.++++|++.+.+++.+. .+||||||||+. +.|..+
T Consensus 4 ~~~~~~~~~IlIID~G~~~----t----~~I~r~lrelgv~~~v~p~~~~~~~i~~~--~~dgIILsGGP~---sv~~~~ 70 (536)
T PLN02347 4 EAAKSYLDVVLILDYGSQY----T----HLITRRVRELGVYSLLLSGTASLDRIASL--NPRVVILSGGPH---SVHVEG 70 (536)
T ss_pred ccccccCCEEEEEECCCcH----H----HHHHHHHHHCCCeEEEEECCCCHHHHhcC--CCCEEEECCCCC---cccccC
Confidence 3334445788888877542 1 22357788999999999998877776532 689999999973 112221
Q ss_pred ccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCcee
Q 041791 84 LSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRV 163 (421)
Q Consensus 84 ~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v 163 (421)
. +| ....+++.+.+.++|+||||+|||+|+.++||++.+....++|
T Consensus 71 ~--------p~-----------------~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~~e~G--------- 116 (536)
T PLN02347 71 A--------PT-----------------VPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYG--------- 116 (536)
T ss_pred C--------ch-----------------hhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCCcccc---------
Confidence 1 01 1124556666789999999999999999999998865433443
Q ss_pred eeccccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCC
Q 041791 164 VHMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEG 243 (421)
Q Consensus 164 ~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~ 243 (421)
++.+.+..+++++..+++. ..+.++++|++.|..+|++|+++|++++|.++++++++
T Consensus 117 -----------~~~v~i~~~~~Lf~~l~~~-----~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~------- 173 (536)
T PLN02347 117 -----------RMEIRVVCGSQLFGDLPSG-----ETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRE------- 173 (536)
T ss_pred -----------eEEEEEcCCChhhhcCCCC-----ceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECC-------
Confidence 7778887778888777641 13678999999998999999999999999999999986
Q ss_pred CcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 041791 244 KFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIA 282 (421)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~ 282 (421)
.++||+|||||+++++.+ ..++++|+..+.+
T Consensus 174 ~~i~GvQFHPE~~~t~~G--------~~iL~NFl~~ic~ 204 (536)
T PLN02347 174 RRIYGLQYHPEVTHSPKG--------METLRHFLFDVCG 204 (536)
T ss_pred CCEEEEEccCCCCccchH--------HHHHHHHHHHHhC
Confidence 789999999999987664 6889999864443
No 24
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.95 E-value=1.8e-27 Score=221.38 Aligned_cols=183 Identities=23% Similarity=0.394 Sum_probs=137.9
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|+|+.+.++.... ..+++++.|+.+.+++.+.. . .+.++.+|||||+||++. |..|
T Consensus 3 ~iliid~~dsf~~~--------i~~~l~~~g~~~~v~~~~~~--~-~~~l~~~d~iIi~gGp~~-~~~~----------- 59 (190)
T PRK06895 3 KLLIINNHDSFTFN--------LVDLIRKLGVPMQVVNVEDL--D-LDEVENFSHILISPGPDV-PRAY----------- 59 (190)
T ss_pred EEEEEeCCCchHHH--------HHHHHHHcCCcEEEEECCcc--C-hhHhccCCEEEECCCCCC-hHHh-----------
Confidence 68888887654222 45678889998888875432 1 223457999999999862 2211
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
++ ...+++. .+.++|+||||+|||+|+.++||++.+... ..|
T Consensus 60 -~~------------------~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~------------~~~------ 101 (190)
T PRK06895 60 -PQ------------------LFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNN------------VRH------ 101 (190)
T ss_pred -hH------------------HHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCC------------Ccc------
Confidence 11 1245554 567999999999999999999999875421 112
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
+.|..+...+++++++.++. .+.++.||++.+. .+|.++.+++.+.++.++++++++ .++||+
T Consensus 102 -g~~~~v~~~~~~~l~~~~~~-------~~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~-------~pi~Gv 166 (190)
T PRK06895 102 -GQQRPLKVRSNSPLFDGLPE-------EFNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKT-------LPIYGV 166 (190)
T ss_pred -CceEEEEECCCChhhhcCCC-------ceEEEcchhheecccccCCCeEEEEECCCCcEEEEEECC-------CCEEEE
Confidence 23677877777888888776 6789999999995 589999999999999999999986 679999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
|||||+..+..+ ..++++|++
T Consensus 167 QFHPE~~~~~~g--------~~il~nf~~ 187 (190)
T PRK06895 167 QFHPESYISEFG--------EQILRNWLA 187 (190)
T ss_pred EeCCCcCCCcch--------HHHHHHHHh
Confidence 999999776554 689999986
No 25
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.95 E-value=2.2e-27 Score=219.38 Aligned_cols=169 Identities=23% Similarity=0.286 Sum_probs=127.1
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
+.+++++.|+.+.+++++.+.+.+. .++.+||||++||+.- + +++ . +
T Consensus 14 ~~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~dgvil~gG~~~-~--~~~----------------------------~-~ 60 (184)
T cd01743 14 LVQYLRELGAEVVVVRNDEITLEEL-ELLNPDAIVISPGPGH-P--EDA----------------------------G-I 60 (184)
T ss_pred HHHHHHHcCCceEEEeCCCCCHHHH-hhcCCCEEEECCCCCC-c--ccc----------------------------h-h
Confidence 4677889999999999977654433 3467999999999741 1 100 0 1
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcccc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRDS 193 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~ 193 (421)
...+..++++++|+||||+|||+|+.++||++.+....+. +.++.+.+.+ +.++..+++
T Consensus 61 ~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~~~-------------------g~~~~v~~~~-~~~~~~~~~- 119 (184)
T cd01743 61 SLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEPMH-------------------GKTSEIHHDG-SGLFKGLPQ- 119 (184)
T ss_pred HHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCCCc-------------------CceeEEEECC-CccccCCCC-
Confidence 2333444567899999999999999999999876542222 2356676654 445555554
Q ss_pred cccCceeEEEeccccccccccCCC--eEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhH
Q 041791 194 LEENKMEIMVNSYHHQGVKKLAQR--FVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKS 271 (421)
Q Consensus 194 l~~~~~~~~V~s~H~~~V~~L~~g--~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~ 271 (421)
.+.++++|++.|..++.+ ++++|.++++.|+|+++++ .++||+|||||+..++.+ ..
T Consensus 120 ------~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~-------~~i~gvQfHPE~~~~~~g--------~~ 178 (184)
T cd01743 120 ------PFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRD-------LPIYGVQFHPESILTEYG--------LR 178 (184)
T ss_pred ------CcEEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCC-------CCEEEEeeCCCcCCCcch--------HH
Confidence 578999999999888877 9999999999999999986 679999999999876554 78
Q ss_pred HHHHHH
Q 041791 272 AYQEFV 277 (421)
Q Consensus 272 lf~~Fv 277 (421)
+|++|+
T Consensus 179 l~~~f~ 184 (184)
T cd01743 179 LLENFL 184 (184)
T ss_pred HHHhhC
Confidence 999984
No 26
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.95 E-value=1.8e-27 Score=222.11 Aligned_cols=182 Identities=20% Similarity=0.353 Sum_probs=131.8
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
|+++.+.++.++.+ ++++++.|+.+.+++++. +.+.+.+ ..+|+||++||+. +| ++.
T Consensus 2 il~id~~dsft~~~--------~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~iilsgGp~-~~--~~~--------- 59 (193)
T PRK08857 2 LLMIDNYDSFTYNL--------YQYFCELGAQVKVVRNDEIDIDGIEA--LNPTHLVISPGPC-TP--NEA--------- 59 (193)
T ss_pred EEEEECCCCcHHHH--------HHHHHHCCCcEEEEECCCCCHHHHhh--CCCCEEEEeCCCC-Ch--HHC---------
Confidence 78888887765543 556788999999999763 4333322 2489999999983 22 111
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
..+..+++. ++.++|+||||+|||+|+.++||++.+....+.|
T Consensus 60 -------------------~~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~~~~G----------------- 102 (193)
T PRK08857 60 -------------------GISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQVMHG----------------- 102 (193)
T ss_pred -------------------cchHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCCceeC-----------------
Confidence 112345555 4689999999999999999999999875432222
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeC--CC---eEEEEEeCCCCCCCCCC
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFAS--DG---LIEGFYDPDAYNPQEGK 244 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~--dg---~ieaie~~~~~~~~~~~ 244 (421)
..+.+... ++.++..++. .+.+++||++.|. .+|.+++++|+++ |+ .|+++++++ .
T Consensus 103 --~~~~~~~~-~~~l~~~~~~-------~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~~-------~ 165 (193)
T PRK08857 103 --KTSPIRHT-GRSVFKGLNN-------PLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHKT-------L 165 (193)
T ss_pred --ceEEEEEC-CCcccccCCC-------ccEEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeCC-------C
Confidence 12334332 3445555544 5789999999985 7999999999886 43 589999987 6
Q ss_pred cEEEEccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 245 FIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
+++|+|||||+..+..+ ..+|++|++
T Consensus 166 pi~gvQfHPE~~~t~~g--------~~i~~nFl~ 191 (193)
T PRK08857 166 PIEAVQFHPESIKTEQG--------HQLLANFLA 191 (193)
T ss_pred CEEEEeeCCCcCCCcch--------HHHHHHHHh
Confidence 89999999999976554 789999986
No 27
>PLN02335 anthranilate synthase
Probab=99.95 E-value=3.6e-27 Score=224.86 Aligned_cols=198 Identities=22% Similarity=0.331 Sum_probs=140.8
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCcccccc
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELS 85 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~ 85 (421)
|...++|+|+.+.+..+.. .+++|...|+.+.+++++. +.+.+.. ..+|||||+|||. +| ++...
T Consensus 15 ~~~~~~ilviD~~dsft~~--------i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg-~p--~d~~~- 80 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYN--------LCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPG-TP--QDSGI- 80 (222)
T ss_pred cCccCcEEEEECCCCHHHH--------HHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCC-Ch--hhccc-
Confidence 4445788888776553333 4667888999999998753 4443332 3689999999984 22 11100
Q ss_pred CCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeee
Q 041791 86 GFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVH 165 (421)
Q Consensus 86 ~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H 165 (421)
. ...++ ....++|+||||+|||+|+.++||++.+...+. .|
T Consensus 81 -------------------------~--~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~~-----------~~ 121 (222)
T PLN02335 81 -------------------------S--LQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV-----------MH 121 (222)
T ss_pred -------------------------h--HHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCCcc-----------cc
Confidence 0 12222 235679999999999999999999987653210 11
Q ss_pred ccccCCCCceeEEEEcc--CCcchhhcccccccCceeEEEecccccccc--ccCCC-eEEEEEeCCCeEEEEEeCCCCCC
Q 041791 166 MNYENYDGHRHLVKVVE--DTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQR-FVPMAFASDGLIEGFYDPDAYNP 240 (421)
Q Consensus 166 ~~~~~~~~~~h~V~i~~--~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g-~~vla~s~dg~ieaie~~~~~~~ 240 (421)
+.+.++.... .++++..++. .+.+++||+++|+ .+|.+ ++++|+++||.|+++++++
T Consensus 122 -------G~~~~v~~~~~~~~~Lf~~l~~-------~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~---- 183 (222)
T PLN02335 122 -------GKSSPVHYDEKGEEGLFSGLPN-------PFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRK---- 183 (222)
T ss_pred -------CceeeeEECCCCCChhhhCCCC-------CCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecC----
Confidence 2355665543 2457766664 6789999999995 57876 9999999999999999986
Q ss_pred CCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 041791 241 QEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEK 285 (421)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~ 285 (421)
.+++||+|||||+..+..+ ..+|++|++.+.++..
T Consensus 184 --~~~i~GvQfHPE~~~~~~g--------~~i~~nF~~~~~~~~~ 218 (222)
T PLN02335 184 --YKHIQGVQFHPESIITTEG--------KTIVRNFIKIIEKKES 218 (222)
T ss_pred --CCCEEEEEeCCCCCCChhH--------HHHHHHHHHHHHhhcc
Confidence 2459999999999876543 7899999998876654
No 28
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.95 E-value=1.2e-27 Score=253.05 Aligned_cols=185 Identities=24% Similarity=0.363 Sum_probs=144.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
...|+|+...+.. . ..+.++|+++|+.+.++|++.+.+++.+. ++||||||||+. +.|+....
T Consensus 3 ~~~i~vlD~Gsq~----~----~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~---sv~~~~~p---- 65 (511)
T PRK00074 3 HDKILILDFGSQY----T----QLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPA---SVYEEGAP---- 65 (511)
T ss_pred CCEEEEEECCCCc----H----HHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCc---ccccCCCc----
Confidence 3578888875432 2 23467899999999999988776666542 569999999984 23432210
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
.+.+.+++.++|+||||+|||+|+.++||++.+....++|
T Consensus 66 -------------------------~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~~~e~G--------------- 105 (511)
T PRK00074 66 -------------------------RADPEIFELGVPVLGICYGMQLMAHQLGGKVERAGKREYG--------------- 105 (511)
T ss_pred -------------------------cccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecCCcccc---------------
Confidence 0113345679999999999999999999998766433443
Q ss_pred CCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 170 NYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 170 ~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
++.+.+.+++++++.++. .+.++++|++.|..+|++++++|+++++.++++++.+ .++||+
T Consensus 106 -----~~~i~i~~~~~Lf~~l~~-------~~~v~~~H~d~V~~lp~g~~vlA~s~~~~v~ai~~~~-------~~i~Gv 166 (511)
T PRK00074 106 -----RAELEVDNDSPLFKGLPE-------EQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEE-------RKFYGV 166 (511)
T ss_pred -----eEEEEEcCCChhhhcCCC-------ceEEEEECCeEEEecCCCcEEEEEeCCCCEEEEEeCC-------CCEEEE
Confidence 778888777788877765 5789999999999999999999999999999999876 689999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
|||||++.+..+ ..+|++|+-
T Consensus 167 QFHPE~~~t~~G--------~~il~nFl~ 187 (511)
T PRK00074 167 QFHPEVTHTPQG--------KKLLENFVF 187 (511)
T ss_pred eCCCCcCCchhH--------HHHHHHHHH
Confidence 999999987553 689999984
No 29
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.95 E-value=1.1e-26 Score=219.60 Aligned_cols=193 Identities=21% Similarity=0.284 Sum_probs=134.6
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|+|+.+.+..+.. .++++++.|+.++++|++.+.+++.. ..+|||||+|||. +| ++.
T Consensus 3 ~il~iD~~dsf~~n--------l~~~l~~~g~~~~v~~~~~~~~~l~~--~~~~~iIlsgGPg-~~--~d~--------- 60 (208)
T PRK05637 3 HVVLIDNHDSFVYN--------LVDAFAVAGYKCTVFRNTVPVEEILA--ANPDLICLSPGPG-HP--RDA--------- 60 (208)
T ss_pred EEEEEECCcCHHHH--------HHHHHHHCCCcEEEEeCCCCHHHHHh--cCCCEEEEeCCCC-CH--HHh---------
Confidence 68888877654333 35667889999999998876666543 2689999999984 11 110
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
..+..+++.+. .++|+||||+|||+|+.++||++.+.. .+.|
T Consensus 61 -------------------~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~-~~~G----------------- 102 (208)
T PRK05637 61 -------------------GNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG-PVHG----------------- 102 (208)
T ss_pred -------------------hHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC-cccc-----------------
Confidence 01234555544 589999999999999999999997543 1222
Q ss_pred CCceeEEEEcc---CCcchhhcccccccC-----ceeEEEeccccccccccCCCeEEEEEeCC--C-eEEEEEeCCCCCC
Q 041791 172 DGHRHLVKVVE---DTPLHQWFRDSLEEN-----KMEIMVNSYHHQGVKKLAQRFVPMAFASD--G-LIEGFYDPDAYNP 240 (421)
Q Consensus 172 ~~~~h~V~i~~---~s~L~~~~~~~l~~~-----~~~~~V~s~H~~~V~~L~~g~~vla~s~d--g-~ieaie~~~~~~~ 240 (421)
.++.+.+.. .++++...+.....+ ...+.|+++|++.|..+|++++++|++++ | .++++++.+
T Consensus 103 --~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~~vlA~s~~~~~~v~~a~~~~~---- 176 (208)
T PRK05637 103 --TTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTCSSEIGPVIMAAETTD---- 176 (208)
T ss_pred --eEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhcCCCCeEEEEEecCCCCCEEEEEEECC----
Confidence 123333322 223433332110000 02578999999999999999999999754 3 678888886
Q ss_pred CCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 241 QEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
.++||+|||||...++.+ ..+|++|++...
T Consensus 177 ---~~~~GvQfHPE~~~T~~G--------~~il~nfl~~~~ 206 (208)
T PRK05637 177 ---GKAIGLQFHPESVLSPTG--------PIILSRCVEQLL 206 (208)
T ss_pred ---CCEEEEEeCCccCcCCCH--------HHHHHHHHHHHh
Confidence 789999999999998876 789999998653
No 30
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.95 E-value=4.5e-27 Score=245.72 Aligned_cols=217 Identities=19% Similarity=0.206 Sum_probs=152.5
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCC---eEEEEcCCCChhhhh---hhcCCcCEEEECCCCCCCCCCccc
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA---VPVIVPRVTGVHMLL---ESFEPIHGVLLCEGEDIDPSLYDA 82 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga---~~vivp~~~~~~~l~---~~l~~~DGVIL~GG~didp~~y~~ 82 (421)
..++|+++.-++.-.+ .| .+++++|..+|+ ..+.+.|....+... +.|+.+||||||||++- +.
T Consensus 288 ~~v~IalVGKY~~~~d---aY--~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~-~~---- 357 (525)
T TIGR00337 288 HEVTIGIVGKYVELKD---SY--LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGE-RG---- 357 (525)
T ss_pred CCcEEEEEeCCcCCHH---HH--HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCC-hh----
Confidence 3588999987754222 23 367889999986 223333433222211 23678999999999731 11
Q ss_pred cccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccc---hhhhccccCC
Q 041791 83 ELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDI---EKEISKNCSL 159 (421)
Q Consensus 83 ~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~---~~e~g~~~~~ 159 (421)
+...+.++++++++++|+||||+|||+|+.++|+++.+.. +.|+....+
T Consensus 358 ---------------------------~~g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~- 409 (525)
T TIGR00337 358 ---------------------------VEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETK- 409 (525)
T ss_pred ---------------------------hcChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCC-
Confidence 0113467889999999999999999999999999987643 223321111
Q ss_pred Cceee----ec-----cccCCCCceeEEEEccCCcchhhccccccc--CceeEEEeccccccccccCCCeEEEEEeCC-C
Q 041791 160 GQRVV----HM-----NYENYDGHRHLVKVVEDTPLHQWFRDSLEE--NKMEIMVNSYHHQGVKKLAQRFVPMAFASD-G 227 (421)
Q Consensus 160 ~~~v~----H~-----~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~--~~~~~~V~s~H~~~V~~L~~g~~vla~s~d-g 227 (421)
..+. +. ....++.+.|.+.+.++|.++++|+..... .++.+.||+.|+++++. +|++++|+++| |
T Consensus 410 -~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~--~GL~vsa~s~Dgg 486 (525)
T TIGR00337 410 -YPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLEN--KGLIVSGTSPDGR 486 (525)
T ss_pred -CCeeeccCcccccccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhh--CCeEEEEEECCCC
Confidence 1111 10 012356778999999999999999875221 24567888888888764 89999999988 5
Q ss_pred eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 228 LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 228 ~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
.||||++++ |+|++|||||||+.+.+.. ..++|..|++|
T Consensus 487 ~VEaIE~~~------hpfflGVQwHPE~~s~p~~-------~~~LF~~FV~A 525 (525)
T TIGR00337 487 LVEIIELPD------HPFFVACQFHPEFTSRPNR-------PHPLFLGFVKA 525 (525)
T ss_pred EEEEEEECC------CCeEEEEecCCCCCCCCCc-------hhHHHHHHHhC
Confidence 999999987 5788899999999876543 57999999974
No 31
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=7.6e-27 Score=214.67 Aligned_cols=184 Identities=22% Similarity=0.361 Sum_probs=140.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
+|+++.+.+++..++++|+ ...|+.++++..+ .+.+.+.. .++|+|||+.||. .|..+
T Consensus 3 ~IL~IDNyDSFtyNLv~yl--------~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG-~P~d~---------- 61 (191)
T COG0512 3 MILLIDNYDSFTYNLVQYL--------RELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPG-TPKDA---------- 61 (191)
T ss_pred eEEEEECccchHHHHHHHH--------HHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCC-ChHHc----------
Confidence 6899999988766665554 6688888888776 23332222 3589999999985 23211
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
..-.++++++ ..++|+||||||||.|+.++||++.+... +.|..
T Consensus 62 --------------------G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~------------~~HGK--- 105 (191)
T COG0512 62 --------------------GISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKE------------PMHGK--- 105 (191)
T ss_pred --------------------chHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCC------------CcCCe---
Confidence 1134677777 67899999999999999999999987631 22321
Q ss_pred CCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccc--cCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEE
Q 041791 171 YDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKK--LAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 171 ~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~--L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~ 247 (421)
.. +.-..++.+|+.+++ .+.+-.||+..++. +|..++++|++.|+ .|.|+++++ .|++
T Consensus 106 ----~s-~i~h~g~~iF~glp~-------~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~-------~pi~ 166 (191)
T COG0512 106 ----TS-IITHDGSGLFAGLPN-------PFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKK-------LPIY 166 (191)
T ss_pred ----ee-eeecCCcccccCCCC-------CCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCC-------CCEE
Confidence 22 222345778888887 78999999998876 99999999998664 999999997 8999
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
|||||||...+..+ .+++++|++.
T Consensus 167 gvQFHPESilT~~G--------~~il~Nfl~~ 190 (191)
T COG0512 167 GVQFHPESILTEYG--------HRILENFLRL 190 (191)
T ss_pred EEecCCccccccch--------HHHHHHHHhh
Confidence 99999999998876 7899999975
No 32
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.95 E-value=3.6e-26 Score=231.13 Aligned_cols=171 Identities=25% Similarity=0.345 Sum_probs=129.3
Q ss_pred hhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhh
Q 041791 31 GEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKD 110 (421)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd 110 (421)
...++++|.+.|+.++++|++.+.+++.+ ..+|||||+||++ ||.. +
T Consensus 178 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPg-dp~~------------------------------~ 224 (354)
T PRK12838 178 KKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPG-DPKE------------------------------L 224 (354)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCC-ChHH------------------------------h
Confidence 35689999999999999999877666543 2699999999984 3310 1
Q ss_pred HHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhc
Q 041791 111 TIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWF 190 (421)
Q Consensus 111 ~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~ 190 (421)
.....+++.++++ +|+||||+|||+|+.++||++++.. ++ | ++..|+|.....+.
T Consensus 225 ~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~---~g----------h------~G~~hpV~~~~~~~----- 279 (354)
T PRK12838 225 QPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLP---FG----------H------RGANHPVIDLTTGR----- 279 (354)
T ss_pred HHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCC---CC----------c------cCCceEEEECCCCe-----
Confidence 1234567777766 9999999999999999999998753 22 1 12367776543321
Q ss_pred ccccccCceeEEEeccccccccc--cCC-CeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCC
Q 041791 191 RDSLEENKMEIMVNSYHHQGVKK--LAQ-RFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDY 266 (421)
Q Consensus 191 ~~~l~~~~~~~~V~s~H~~~V~~--L~~-g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~ 266 (421)
.+.++++|+++|+. ++. ++.+.+.+ +|+.||||++++ .++||||||||+...+. +
T Consensus 280 ---------~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~-------~pi~gVQfHPE~~~gp~--d--- 338 (354)
T PRK12838 280 ---------VWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKK-------KPVLSVQFHPEAHPGPH--D--- 338 (354)
T ss_pred ---------EEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECC-------CCEEEEEeCCCCCCCCc--c---
Confidence 34678899999954 664 58999986 799999999997 67999999999976432 1
Q ss_pred chhhHHHHHHHHHHHH
Q 041791 267 PGCKSAYQEFVKAVIA 282 (421)
Q Consensus 267 ~~~~~lf~~Fv~a~~~ 282 (421)
...+|++|++++.+
T Consensus 339 --~~~lF~~F~~~~~~ 352 (354)
T PRK12838 339 --AEYIFDEFLEMMEK 352 (354)
T ss_pred --HHHHHHHHHHHHHh
Confidence 47899999998853
No 33
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=228.83 Aligned_cols=174 Identities=26% Similarity=0.416 Sum_probs=137.6
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
...+|.|.+.|+.++++|++.+.+++++. ++|||+|+.||. ||.. -.
T Consensus 191 ~nIlr~L~~rg~~vtVVP~~t~~eeIl~~--~pDGiflSNGPG-DP~~------------------------------~~ 237 (368)
T COG0505 191 RNILRELVKRGCRVTVVPADTSAEEILAL--NPDGIFLSNGPG-DPAP------------------------------LD 237 (368)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHhh--CCCEEEEeCCCC-ChhH------------------------------HH
Confidence 46899999999999999999999888765 799999999985 4421 12
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcc
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFR 191 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~ 191 (421)
..+..++..++..+|+||||+|||+|+.|+|++++++ .||++ +..|+|.-... +
T Consensus 238 ~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Km---kFGHr----------------G~NhPV~dl~t-------g 291 (368)
T COG0505 238 YAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKM---KFGHR----------------GANHPVKDLDT-------G 291 (368)
T ss_pred HHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeec---ccCCC----------------CCCcCcccccC-------C
Confidence 2457788888889999999999999999999999998 57632 23455542111 1
Q ss_pred cccccCceeEEEecccccccc--ccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCch
Q 041791 192 DSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPG 268 (421)
Q Consensus 192 ~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (421)
. .+.+.++|+++|+ +++...+++..+ +||.+|++++++ .|+|+||||||.++ |+.|
T Consensus 292 r-------v~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~-------~P~fSVQ~HPEAsP--GPhD----- 350 (368)
T COG0505 292 R-------VYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKD-------LPAFSVQYHPEASP--GPHD----- 350 (368)
T ss_pred e-------EEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCC-------CceEEEccCCCCCC--CCcc-----
Confidence 1 5567899999996 455544777876 799999999997 89999999999775 6655
Q ss_pred hhHHHHHHHHHHHHHHH
Q 041791 269 CKSAYQEFVKAVIAYEK 285 (421)
Q Consensus 269 ~~~lf~~Fv~a~~~~~~ 285 (421)
+..+|+.|++.+.++++
T Consensus 351 t~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 351 TRYLFDEFIELMEAAKK 367 (368)
T ss_pred cHHHHHHHHHHHHHhhc
Confidence 68899999999887653
No 34
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.3e-26 Score=217.22 Aligned_cols=187 Identities=26% Similarity=0.340 Sum_probs=142.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCC-CeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYG-AVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
.+|+|+...+. +.+. +-++++..| ....++|++.+.+.+.. ...|||||+||+. +.|+++.
T Consensus 2 ~~ilIld~g~q----~~~l----i~r~~re~g~v~~e~~~~~~~~~~~~~--~~~~giIlsGgp~---sv~~~~~----- 63 (198)
T COG0518 2 RKILILDFGGQ----YLGL----IARRLRELGYVYSEIVPYTGDAEELPL--DSPDGIIISGGPM---SVYDEDP----- 63 (198)
T ss_pred cEEEEEeCCCc----HhHH----HHHHHHHcCCceEEEEeCCCCcccccc--cCCCEEEEcCCCC---CCccccc-----
Confidence 46778777652 2333 356788999 78888898877666543 2469999999982 3344432
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
|++ -+...++.+...++|+||||+|||+|+.++||+|.+....|+|
T Consensus 64 ----w~~---------------~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G--------------- 109 (198)
T COG0518 64 ----WLP---------------REKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPKREIG--------------- 109 (198)
T ss_pred ----cch---------------hHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCCCccc---------------
Confidence 221 1335556665667789999999999999999999887656665
Q ss_pred CCCCceeEEEEcc-CCcchhhcccccccCceeE-EEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 041791 170 NYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEI-MVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 170 ~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~-~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
|.+|.+.+ .+.+++.++. .. .|+++|++.|.+||+|++++|.++.+.++|+++. ++++
T Consensus 110 -----~~~v~~~~~~~~l~~gl~~-------~~~~v~~sH~D~v~~lP~g~~vlA~s~~cp~qa~~~~--------~~~~ 169 (198)
T COG0518 110 -----WTPVELTEGDDPLFAGLPD-------LFTTVFMSHGDTVVELPEGAVVLASSETCPNQAFRYG--------KRAY 169 (198)
T ss_pred -----eEEEEEecCccccccCCcc-------ccCccccchhCccccCCCCCEEEecCCCChhhheecC--------CcEE
Confidence 88898874 3467776654 34 5999999999999999999999999999999986 5899
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
|+|||||.++.. ...++++|..
T Consensus 170 gvQFHpEv~~~~---------~~~~l~nf~~ 191 (198)
T COG0518 170 GVQFHPEVTHEY---------GEALLENFAH 191 (198)
T ss_pred EEeeeeEEeHHH---------HHHHHHHhhh
Confidence 999999999832 3678888874
No 35
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.93 E-value=2.2e-25 Score=206.39 Aligned_cols=175 Identities=27% Similarity=0.423 Sum_probs=129.2
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
....+++++.|..+.+++++.+.....+.++++|||||+||+.- + |+ ..
T Consensus 11 ~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~-~--~d----------------------------~~ 59 (192)
T PF00117_consen 11 HSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGS-P--YD----------------------------IE 59 (192)
T ss_dssp HHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSS-T--TS----------------------------HH
T ss_pred HHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCc-c--cc----------------------------cc
Confidence 34578899999998899877654443224678999999999731 1 11 12
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcc
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFR 191 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~ 191 (421)
.+..+++++++.++|+||||+|||+|+.++||++.+... .+ +. +....+...+.++++...+
T Consensus 60 ~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~--~~----------~~------g~~~~~~~~~~~~~~~~~~ 121 (192)
T PF00117_consen 60 GLIELIREARERKIPILGICLGHQILAHALGGKVVPSPE--KP----------HH------GGNIPISETPEDPLFYGLP 121 (192)
T ss_dssp HHHHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEES--EE----------EE------EEEEEEEEEEEHGGGTTST
T ss_pred ccccccccccccceEEEEEeehhhhhHHhcCCccccccc--cc----------cc------ccccccccccccccccccc
Confidence 356788999999999999999999999999999876431 11 10 1123333322335555554
Q ss_pred cccccCceeEEEeccccccccc---cCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCc
Q 041791 192 DSLEENKMEIMVNSYHHQGVKK---LAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYP 267 (421)
Q Consensus 192 ~~l~~~~~~~~V~s~H~~~V~~---L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~ 267 (421)
+ .+.++.+|++.|.. +|.+++++|++.++ .++++.+.+ .+++|+|||||++.+.++
T Consensus 122 ~-------~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~-------~~i~g~QfHPE~~~~~~~------ 181 (192)
T PF00117_consen 122 E-------SFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKD-------NPIYGVQFHPEFSSSPGG------ 181 (192)
T ss_dssp S-------EEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECT-------TSEEEESSBTTSTTSTTH------
T ss_pred c-------ccccccccceeeecccccccccccccccccccccccccccc-------cEEEEEecCCcCCCCCCc------
Confidence 4 78899999999988 99999999999776 899999986 569999999999987664
Q ss_pred hhhHHHHHHH
Q 041791 268 GCKSAYQEFV 277 (421)
Q Consensus 268 ~~~~lf~~Fv 277 (421)
..++.+|+
T Consensus 182 --~~~l~nf~ 189 (192)
T PF00117_consen 182 --PQLLKNFF 189 (192)
T ss_dssp --HHHHHHHH
T ss_pred --chhhhhee
Confidence 45666664
No 36
>PRK13566 anthranilate synthase; Provisional
Probab=99.93 E-value=4.5e-25 Score=240.73 Aligned_cols=195 Identities=24% Similarity=0.219 Sum_probs=148.8
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
+..-++|+|+...+.. .....++++..|+.+++++++.+.+.+. . ..+|||||+||+. +|..
T Consensus 523 ~~~g~~IlvID~~dsf--------~~~l~~~Lr~~G~~v~vv~~~~~~~~~~-~-~~~DgVVLsgGpg-sp~d------- 584 (720)
T PRK13566 523 VGEGKRVLLVDHEDSF--------VHTLANYFRQTGAEVTTVRYGFAEEMLD-R-VNPDLVVLSPGPG-RPSD------- 584 (720)
T ss_pred CCCCCEEEEEECCCch--------HHHHHHHHHHCCCEEEEEECCCChhHhh-h-cCCCEEEECCCCC-Chhh-------
Confidence 3344688888877432 2245678899999999999876544433 2 3699999999974 1211
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
.....+++.++++++||||||+|||+|+.++||++.+....+.
T Consensus 585 ------------------------~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~~------------- 627 (720)
T PRK13566 585 ------------------------FDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMH------------- 627 (720)
T ss_pred ------------------------CCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCCCcc-------------
Confidence 0134788899999999999999999999999999976532111
Q ss_pred cccCCCCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCC
Q 041791 167 NYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGK 244 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~ 244 (421)
+.+++|.+..++.+++.+++ .+.++.+|++.+. .+|++++++|+++||.|++|++++ .
T Consensus 628 ------G~~~~V~v~~~~~Lf~~lp~-------~~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~-------~ 687 (720)
T PRK13566 628 ------GKPSRIRVRGPGRLFSGLPE-------EFTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKT-------L 687 (720)
T ss_pred ------CCceEEEECCCCchhhcCCC-------CCEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECC-------C
Confidence 23678888877788887765 5788999998774 499999999999999999999986 6
Q ss_pred cEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 245 FIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
+++|||||||+..+..+.. -.++|++|++.+.
T Consensus 688 pi~GVQFHPE~i~t~~~~~-----G~~ii~nfl~~~~ 719 (720)
T PRK13566 688 PVAAVQFHPESIMTLGGDV-----GLRIIENVVRLLA 719 (720)
T ss_pred CEEEEeccCeeCCcCCchh-----HHHHHHHHHHHhh
Confidence 8999999999977632211 3789999998774
No 37
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.93 E-value=4.4e-25 Score=212.50 Aligned_cols=157 Identities=23% Similarity=0.273 Sum_probs=116.1
Q ss_pred HHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHH
Q 041791 37 LIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRL 116 (421)
Q Consensus 37 ~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~l 116 (421)
.+...|....++....+ +.++ .++.+|||||+||+.- .|++ .+|+.+ +.++
T Consensus 30 ~~~~~~~~~~~~~~~~~-~~~p-~~~~~dgvvi~Gg~~~---~~d~---------~~w~~~---------------~~~~ 80 (237)
T PRK09065 30 ALGLAEQPVVVVRVFAG-EPLP-APDDFAGVIITGSWAM---VTDR---------LDWSER---------------TADW 80 (237)
T ss_pred HhccCCceEEEEeccCC-CCCC-ChhhcCEEEEeCCCcc---cCCC---------chhHHH---------------HHHH
Confidence 34445766555443322 2222 3457999999999831 1322 345532 4678
Q ss_pred HHHHHHcCCCEEEEchhhHHHHHHhCCcccccch-hhhccccCCCceeeeccccCCCCceeEEEEccC---Ccchhhccc
Q 041791 117 AKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE-KEISKNCSLGQRVVHMNYENYDGHRHLVKVVED---TPLHQWFRD 192 (421)
Q Consensus 117 i~~ale~~iPiLGIClG~QlLava~GG~v~~~~~-~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~---s~L~~~~~~ 192 (421)
++.+++.++|+||||+|||+|+.++||++.+... .++ +++.|.+++. .++++.++.
T Consensus 81 i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~--------------------G~~~v~~~~~~~~~~l~~~~~~ 140 (237)
T PRK09065 81 LRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRES--------------------GTVTVELHPAAADDPLFAGLPA 140 (237)
T ss_pred HHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCcc--------------------ceEEEEEccccccChhhhcCCc
Confidence 8999999999999999999999999999876532 122 3778887653 456666654
Q ss_pred ccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 193 SLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 193 ~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
.+.++++|++.|.++|++++++|+++++.|++++++ .+++|+|||||++.
T Consensus 141 -------~~~v~~~H~d~v~~lp~~~~~la~s~~~~iqa~~~~--------~~i~gvQfHPE~~~ 190 (237)
T PRK09065 141 -------QFPAHLTHLQSVLRLPPGAVVLARSAQDPHQAFRYG--------PHAWGVQFHPEFTA 190 (237)
T ss_pred -------cCcEeeehhhhhhhCCCCCEEEEcCCCCCeeEEEeC--------CCEEEEEeCCcCCH
Confidence 678999999999899999999999999999999986 36999999999864
No 38
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.93 E-value=1.7e-24 Score=220.48 Aligned_cols=183 Identities=23% Similarity=0.405 Sum_probs=130.9
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
.++|+|+... . ....+++|.++|+.++++|++.+.+++... ++|||||+|||. ||..+
T Consensus 192 ~~~I~viD~g-~---------k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~--~~dgIilSgGPg-~p~~~--------- 249 (382)
T CHL00197 192 QLKIIVIDFG-V---------KYNILRRLKSFGCSITVVPATSPYQDILSY--QPDGILLSNGPG-DPSAI--------- 249 (382)
T ss_pred CCEEEEEECC-c---------HHHHHHHHHHCCCeEEEEcCCCCHHHHhcc--CCCEEEEcCCCC-ChhHH---------
Confidence 3567777762 1 123688999999999999998877665432 689999999984 33211
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
......++.+++.++|+||||+|||+|+.++||++.+.. +|+ .
T Consensus 250 ---------------------~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~~---~Gh-----~-------- 292 (382)
T CHL00197 250 ---------------------HYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLK---FGH-----R-------- 292 (382)
T ss_pred ---------------------HHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEeccC---CCC-----C--------
Confidence 012345566677799999999999999999999988753 331 0
Q ss_pred CCCCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCC-CeEEEEEe-CCCeEEEEEeCCCCCCCCCCc
Q 041791 170 NYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQ-RFVPMAFA-SDGLIEGFYDPDAYNPQEGKF 245 (421)
Q Consensus 170 ~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~-g~~vla~s-~dg~ieaie~~~~~~~~~~~~ 245 (421)
+..|++.+. +. ...+.++|++.|. .++. ++.+++.+ +|+.+|+|++++ .+
T Consensus 293 ---g~n~pv~~~---------~~-------v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~-------~p 346 (382)
T CHL00197 293 ---GLNHPSGLN---------QQ-------VEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSP-------KP 346 (382)
T ss_pred ---CCCEecCCC---------Cc-------eEEeecchheEeeccccCCCCcEEEEEECCCCCEEEEEECC-------CC
Confidence 113433211 01 2234578998884 4664 79999986 789999999997 78
Q ss_pred EEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 041791 246 IMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYE 284 (421)
Q Consensus 246 i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~ 284 (421)
+||||||||+...+.. ...+|++|++.+++.+
T Consensus 347 i~gVQFHPE~~~gp~d-------~~~lf~~Fv~~~~~~~ 378 (382)
T CHL00197 347 YFSVQYHPEASPGPHD-------ADYLFEYFIEIIKHSK 378 (382)
T ss_pred cEEEeeCCCCCCCCCC-------HHHHHHHHHHHHHhhh
Confidence 9999999999875442 4579999999887543
No 39
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.93 E-value=6.1e-25 Score=212.11 Aligned_cols=187 Identities=18% Similarity=0.195 Sum_probs=128.3
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCe---EEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV---PVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~---~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
+| |+|+...+.. ...+..|.+++...|.. ..++..... +.....++.+|||||+||+. ++ |+..
T Consensus 2 ~~-ililq~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dgvIi~Gg~~-~~--~d~~--- 68 (242)
T PRK07567 2 KP-FLLLSPRPED-----EAADAEYAAFLRYTGLDPAELRRIRLDRE-PLPDLDLDDYSGVIVGGSPF-NV--SDPA--- 68 (242)
T ss_pred Cc-EEEEecCCCc-----ccccchHHHHHHhcCCCccceEEEecccC-CCCCCCHhhccEEEEcCCCC-cC--CCCC---
Confidence 56 6777765431 11226678888888865 333332222 11122356799999999982 11 2221
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
.++.+|+.++ ......+++.+.+.++|+||||+|||+|+.++||++.+....++
T Consensus 69 --~~~~pw~~~~-----------~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~------------- 122 (242)
T PRK07567 69 --ESKSPWQRRV-----------EAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPV------------- 122 (242)
T ss_pred --CccchHHHHH-----------HHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcC-------------
Confidence 0124565432 11123567778899999999999999999999999976322233
Q ss_pred cccCCCCceeEEEEccC---CcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCC
Q 041791 167 NYENYDGHRHLVKVVED---TPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEG 243 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~---s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~ 243 (421)
+++++.+++. ++++..++. .+.++.+|++.|..+|++++++|+++++.++|++..
T Consensus 123 -------G~~~v~l~~~g~~~~l~~~~~~-------~~~~~~~H~d~V~~lp~~~~vlA~s~~~~vqa~~~~-------- 180 (242)
T PRK07567 123 -------GAVTVSLTDAGRADPLLAGLPD-------TFTAFVGHKEAVSALPPGAVLLATSPTCPVQMFRVG-------- 180 (242)
T ss_pred -------ccEEEEECCccCCChhhcCCCC-------ceEEEeehhhhhhhCCCCCEEEEeCCCCCEEEEEeC--------
Confidence 3678887653 345555554 678889999999999999999999999999999986
Q ss_pred CcEEEEccccCccC
Q 041791 244 KFIMGLQFHPERMR 257 (421)
Q Consensus 244 ~~i~GvQFHPE~~~ 257 (421)
.+++|+|||||++.
T Consensus 181 ~~~~gvQfHPE~~~ 194 (242)
T PRK07567 181 ENVYATQFHPELDA 194 (242)
T ss_pred CCEEEEEeCCcCCH
Confidence 46999999999875
No 40
>PRK05665 amidotransferase; Provisional
Probab=99.93 E-value=5.8e-25 Score=211.99 Aligned_cols=182 Identities=16% Similarity=0.149 Sum_probs=126.1
Q ss_pred EEEEEeccccC---cccchhhhhhHHHHHHHHCCCe--EEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 12 RVLIVSRRTVR---KNKFVDFVGEYHLDLIVSYGAV--PVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 12 ~igI~~~~~~~---~~~~~~~v~~~yl~~l~~~Ga~--~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
+|+|+...+.. ...+-+|- .-+.+++...+.. ..++.... ..++..++.+|||||+||+. +.|+
T Consensus 4 ki~IL~~~~~~~~~~~~~g~~~-~~~~~ll~~~~~~~~~~~~~~~~--~~~p~~~~~~dgiiitGs~~---~v~~----- 72 (240)
T PRK05665 4 RICILETDVLRPELVAQYQGYG-RMFEQLFARQPIAAEFVVYNVVQ--GDYPADDEKFDAYLVTGSKA---DSFG----- 72 (240)
T ss_pred EEEEEECCCCCHHHHHHhCCHH-HHHHHHHHhCCCCceEEEEeccC--CCCCCCcccCCEEEECCCCC---Cccc-----
Confidence 38888755431 11121211 1234556666642 22222111 12333456899999999973 1133
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
+.+||++ +.++++.+.++++|+||||+|||+|+.++||++.+...+ ++
T Consensus 73 ----~~pwi~~---------------l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G-~e------------ 120 (240)
T PRK05665 73 ----TDPWIQT---------------LKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQG-WG------------ 120 (240)
T ss_pred ----cchHHHH---------------HHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCC-cc------------
Confidence 2357754 357888899999999999999999999999999876421 10
Q ss_pred cccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 041791 167 NYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFI 246 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i 246 (421)
.+++.+.+.+..+++...+. .+.++++|++.|..||+|++++|+++++.+++++.. .++
T Consensus 121 ------~G~~~~~~~~~~~~~~~~~~-------~~~~~~~H~D~V~~LP~ga~~La~s~~~~~q~~~~~--------~~~ 179 (240)
T PRK05665 121 ------VGIHRYQLAAHAPWMSPAVT-------ELTLLISHQDQVTALPEGATVIASSDFCPFAAYHIG--------DQV 179 (240)
T ss_pred ------cceEEEEecCCCccccCCCC-------ceEEEEEcCCeeeeCCCCcEEEEeCCCCcEEEEEeC--------CCE
Confidence 13566777665556555544 688999999999999999999999999999999976 479
Q ss_pred EEEccccCccC
Q 041791 247 MGLQFHPERMR 257 (421)
Q Consensus 247 ~GvQFHPE~~~ 257 (421)
||+|||||++.
T Consensus 180 ~g~QfHPE~~~ 190 (240)
T PRK05665 180 LCFQGHPEFVH 190 (240)
T ss_pred EEEecCCcCcH
Confidence 99999999886
No 41
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=3.8e-25 Score=235.33 Aligned_cols=186 Identities=19% Similarity=0.310 Sum_probs=134.1
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCe-EEEE-cCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV-PVIV-PRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-~viv-p~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+|+|+.+.+++... .++.|++.|+. +.++ |++.+.+.+.. ..+|||||+|||+ +|. +.
T Consensus 1 ~il~idn~dsft~n--------l~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~-~p~--~~------- 60 (534)
T PRK14607 1 MIILIDNYDSFTYN--------IYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPG-RPE--EA------- 60 (534)
T ss_pred CEEEEECchhHHHH--------HHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCC-Chh--hC-------
Confidence 37888888664333 35667888985 4444 44445555432 2589999999985 221 11
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
..+..+++. .+.++|+||||+|||+|+.++||++.+....+.|
T Consensus 61 ---------------------~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~~G--------------- 103 (534)
T PRK14607 61 ---------------------GISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKRILHG--------------- 103 (534)
T ss_pred ---------------------CccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCccccC---------------
Confidence 112355665 3678999999999999999999998876432222
Q ss_pred CCCCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 041791 170 NYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 170 ~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
..+.+... ++.++..++. .+.+++||++.|+ .+|.+++++|+++||.|++|++++ .++|
T Consensus 104 ----~~~~v~~~-~~~lf~~~~~-------~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~-------~pi~ 164 (534)
T PRK14607 104 ----KTSPIDHN-GKGLFRGIPN-------PTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKE-------HPIF 164 (534)
T ss_pred ----CceeEEEC-CCcchhcCCC-------CcEEeeccchheecccCCCCeEEEEEcCCCCEEEEEECC-------CCEE
Confidence 23444443 3446655554 5678999999985 699999999999999999999986 6799
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
|+|||||+..+.. ...+|++|++.+.
T Consensus 165 GvQFHPE~~~t~~--------g~~i~~nFl~~~~ 190 (534)
T PRK14607 165 GVQFHPESILTEE--------GKRILKNFLNYQR 190 (534)
T ss_pred EEEeCCCCCCChh--------HHHHHHHHHHHhh
Confidence 9999999876544 3789999999764
No 42
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.92 E-value=1.4e-24 Score=200.77 Aligned_cols=174 Identities=27% Similarity=0.326 Sum_probs=127.0
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCC---eEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA---VPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga---~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
+|+|+....... ...|.++++++|+ .+.+++...... ...++.+|||||+||+. ++ .++.
T Consensus 1 ~i~il~~~~~~~-------~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~-~~-~~~~------ 63 (188)
T cd01741 1 RILILQHDTPEG-------PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPM-SV-DEDD------ 63 (188)
T ss_pred CEEEEECCCCCC-------cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCc-cC-CccC------
Confidence 356666544321 6678889999994 555555544322 34567899999999973 11 1111
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccc
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNY 168 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~ 168 (421)
.+|+ .....++++++++++|+||||+|+|+|+.++||++.+...+
T Consensus 64 ---~~~~---------------~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~----------------- 108 (188)
T cd01741 64 ---YPWL---------------KKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKG----------------- 108 (188)
T ss_pred ---ChHH---------------HHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCc-----------------
Confidence 1232 22467889999999999999999999999999998876422
Q ss_pred cCCCCceeEEEEccCC---cchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCc
Q 041791 169 ENYDGHRHLVKVVEDT---PLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKF 245 (421)
Q Consensus 169 ~~~~~~~h~V~i~~~s---~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~ 245 (421)
+..+++++.++++. ++++..+. .+.++++|++.|..+|++++++|+++++.|++++.+ .+
T Consensus 109 --~~~g~~~v~~~~~~~~~~l~~~~~~-------~~~v~~~H~~~v~~lp~~~~~la~~~~~~v~~~~~~--------~~ 171 (188)
T cd01741 109 --WEIGWFPVTLTEAGKADPLFAGLPD-------EFPVFHWHGDTVVELPPGAVLLASSEACPNQAFRYG--------DR 171 (188)
T ss_pred --ceeEEEEEEeccccccCchhhcCCC-------cceEEEEeccChhhCCCCCEEeecCCCCCcceEEec--------CC
Confidence 01247888876543 33433443 678999999999989999999999999999999986 48
Q ss_pred EEEEccccC
Q 041791 246 IMGLQFHPE 254 (421)
Q Consensus 246 i~GvQFHPE 254 (421)
++|+|||||
T Consensus 172 ~~g~QfHPE 180 (188)
T cd01741 172 ALGLQFHPE 180 (188)
T ss_pred EEEEccCch
Confidence 999999999
No 43
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.92 E-value=2.3e-24 Score=234.87 Aligned_cols=194 Identities=21% Similarity=0.238 Sum_probs=144.3
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
...++|+|+...+.. .....++|+..|+.+.++++.... .+.+. ..+|||||+||+. +|..
T Consensus 514 ~~~~~IlVID~gds~--------~~~l~~~L~~~G~~v~vv~~~~~~-~~~~~-~~~DgLILsgGPG-sp~d-------- 574 (717)
T TIGR01815 514 GEGRRILLVDHEDSF--------VHTLANYLRQTGASVTTLRHSHAE-AAFDE-RRPDLVVLSPGPG-RPAD-------- 574 (717)
T ss_pred CCCCEEEEEECCChh--------HHHHHHHHHHCCCeEEEEECCCCh-hhhhh-cCCCEEEEcCCCC-Cchh--------
Confidence 445788888766332 124567889999999888865432 22222 3699999999984 1210
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecc
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
..+..+++++++.++|+||||+|||+|+.++||++.+....+.
T Consensus 575 -----------------------~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~p~~-------------- 617 (717)
T TIGR01815 575 -----------------------FDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVH-------------- 617 (717)
T ss_pred -----------------------cccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCCCee--------------
Confidence 0123567888889999999999999999999999876532122
Q ss_pred ccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccc--cccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCc
Q 041791 168 YENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGV--KKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKF 245 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V--~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~ 245 (421)
+.++.|.+..+++++..++. .+.+++||++.+ ..+|++++++|++++|.++||++++ .+
T Consensus 618 -----G~~~~V~~~~~~~Lf~~lp~-------~~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~-------~~ 678 (717)
T TIGR01815 618 -----GKASRIRVLGPDALFAGLPE-------RLTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRR-------LP 678 (717)
T ss_pred -----CcceEEEECCCChhhhcCCC-------CCEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECC-------CC
Confidence 23567777666777777765 678999999876 5689999999999999999999986 67
Q ss_pred EEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 246 IMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 246 i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
++|||||||+..+..+.. ...++++|+..+.
T Consensus 679 i~GVQFHPEsi~T~sg~~-----G~~ilkNfl~~~~ 709 (717)
T TIGR01815 679 LAAVQFHPESIMTLDGGA-----GLAMIGNVVDRLA 709 (717)
T ss_pred EEEEEeCCeeCCccCchh-----HHHHHHHHHHHHh
Confidence 999999999976543211 3789999998774
No 44
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.92 E-value=1e-23 Score=203.28 Aligned_cols=180 Identities=24% Similarity=0.240 Sum_probs=128.0
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
...+++|+|+-+.... + ...+.+++...|..+.++....+ +.+++.++.+|||||+||+. + .|+.
T Consensus 4 ~~~~~~vlvi~h~~~~------~-~g~l~~~l~~~g~~~~v~~~~~~-~~~p~~l~~~dgvii~Ggp~-~--~~d~---- 68 (239)
T PRK06490 4 ARDKRPVLIVLHQERS------T-PGRVGQLLQERGYPLDIRRPRLG-DPLPDTLEDHAGAVIFGGPM-S--ANDP---- 68 (239)
T ss_pred cCCCceEEEEecCCCC------C-ChHHHHHHHHCCCceEEEeccCC-CCCCCcccccCEEEEECCCC-C--CCCC----
Confidence 3456788888876431 1 12345677889988876643322 12344567899999999983 1 1222
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
.+|+. .+.++++.+++.++|+||||+|||+|+.++||++.+...+.
T Consensus 69 -----~~wi~---------------~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~-------------- 114 (239)
T PRK06490 69 -----DDFIR---------------REIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGR-------------- 114 (239)
T ss_pred -----chHHH---------------HHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCC--------------
Confidence 13442 24678899999999999999999999999999998753210
Q ss_pred cccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 041791 167 NYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFI 246 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i 246 (421)
...+++++.+++.++++..+ ...++++|++. ..||++++++|+++++.+++|++. .++
T Consensus 115 ----~e~G~~~i~~~~~~~~~~~~---------~~~~~~~H~d~-~~lP~~~~~LA~s~~~~~qa~~~~--------~~v 172 (239)
T PRK06490 115 ----VEIGYYPLRPTEAGRALMHW---------PEMVYHWHREG-FDLPAGAELLATGDDFPNQAFRYG--------DNA 172 (239)
T ss_pred ----CccceEEeEECCCcccccCC---------CCEEEEECCcc-ccCCCCCEEEEeCCCCCeEEEEeC--------CCE
Confidence 01247888887655443222 22477889998 579999999999999999999986 479
Q ss_pred EEEccccCccC
Q 041791 247 MGLQFHPERMR 257 (421)
Q Consensus 247 ~GvQFHPE~~~ 257 (421)
||+|||||++.
T Consensus 173 ~g~QfHPE~~~ 183 (239)
T PRK06490 173 WGLQFHPEVTR 183 (239)
T ss_pred EEEeeCccCCH
Confidence 99999999873
No 45
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.91 E-value=5.4e-24 Score=217.42 Aligned_cols=152 Identities=24% Similarity=0.317 Sum_probs=119.5
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhCCccccc---chhhhccccCCCceeeeccc---------cCCCCceeEEEE
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQD---IEKEISKNCSLGQRVVHMNY---------ENYDGHRHLVKV 180 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~---~~~e~g~~~~~~~~v~H~~~---------~~~~~~~h~V~i 180 (421)
.+..+++|+++++|+||||+|||++.+++..++... .+.|+....+ ..+....+ ..++.+..++.+
T Consensus 361 kI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~--~pVv~l~~eq~~~~~lGGTmRLG~y~~~l 438 (533)
T COG0504 361 KIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTK--YPVVDLMPEQKDVVDLGGTMRLGAYPCRL 438 (533)
T ss_pred HHHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCC--CceEEeccccccCCcCCceeeccceeeec
Confidence 468899999999999999999999999988776532 2345542111 12222211 246677889999
Q ss_pred ccCCcchhhcccccccCceeEEEeccccccccc------cCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEcccc
Q 041791 181 VEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKK------LAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHP 253 (421)
Q Consensus 181 ~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~------L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHP 253 (421)
.++|..++.|+.. .+...+.|+|.|+. ...|++++++++|| .+|++|.++ |+||+|+||||
T Consensus 439 ~~gT~a~~lY~~~------~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~------hpfFv~~QfHP 506 (533)
T COG0504 439 KPGTLAAKLYGKD------EIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPD------HPFFVATQFHP 506 (533)
T ss_pred CCCcHHHHHhCCC------eeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCC------CceEEEEcccc
Confidence 9999999999864 56667788888742 35789999999986 899999998 79999999999
Q ss_pred CccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 041791 254 ERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEK 285 (421)
Q Consensus 254 E~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~ 285 (421)
|+.+++.. ++++|..|++|+.++++
T Consensus 507 Ef~SrP~~-------phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 507 EFKSRPLR-------PHPLFVGFVKAALEYKK 531 (533)
T ss_pred cccCCCCC-------CCccHHHHHHHHHHhhc
Confidence 99998876 58999999999988765
No 46
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.91 E-value=4.9e-24 Score=226.11 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=131.4
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC----hhhhhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG----VHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~----~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
+|+|+.+.+++.... ++.|+..|+.+++++.+.. .+.+.. .++|+|||+|||+ +|. +..
T Consensus 3 ~iLiIDn~dsft~nl--------~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg-~p~--d~~---- 65 (531)
T PRK09522 3 DILLLDNIDSFTYNL--------ADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPG-VPS--EAG---- 65 (531)
T ss_pred eEEEEeCCChHHHHH--------HHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCC-Chh--hCC----
Confidence 689999887653332 4456778988888875432 222221 2478999999985 231 110
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecc
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
.. ..++++ +..++||||||+|||+|+.++||++.+......|
T Consensus 66 -----------------~~-------~~i~~~-~~~~iPILGIClG~QlLa~a~GG~V~~~~~~~~G------------- 107 (531)
T PRK09522 66 -----------------CM-------PELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHG------------- 107 (531)
T ss_pred -----------------CC-------HHHHHH-HhcCCCEEEEcHHHHHHHHhcCCEEEeCCceeee-------------
Confidence 00 122332 3468999999999999999999999875321121
Q ss_pred ccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 041791 168 YENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
....+.. .+..++..++. .+.++.||++.|..+|++++++|+ +|+.++++++.+ .++|
T Consensus 108 ------~~~~i~~-~~~~lf~~~~~-------~~~v~~~Hs~~v~~lP~~l~vlA~-sd~~v~ai~~~~-------~~i~ 165 (531)
T PRK09522 108 ------KASSIEH-DGQAMFAGLTN-------PLPVARYHSLVGSNIPAGLTINAH-FNGMVMAVRHDA-------DRVC 165 (531)
T ss_pred ------eEEEEee-cCCccccCCCC-------CcEEEEehheecccCCCCcEEEEe-cCCCEEEEEECC-------CCEE
Confidence 1122222 23345555544 578999999999899999999997 588999999976 7899
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIA 282 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~ 282 (421)
|||||||+..++.+ ..++++|++.+..
T Consensus 166 GVQFHPEs~~T~~G--------~~il~NFl~~~~~ 192 (531)
T PRK09522 166 GFQFHPESILTTQG--------ARLLEQTLAWAQQ 192 (531)
T ss_pred EEEecCccccCcch--------HHHHHHHHHHHhh
Confidence 99999999999876 7899999998753
No 47
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.91 E-value=1.1e-23 Score=215.32 Aligned_cols=152 Identities=28% Similarity=0.402 Sum_probs=115.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
..+++|.++|+.++++|++.+.+++... ++|||||+|||. ||.. +.+
T Consensus 253 nIlr~L~~~G~~v~VvP~~~~~~ei~~~--~pDGIiLSnGPG-DP~~------------~~~------------------ 299 (415)
T PLN02771 253 NILRRLASYGCKITVVPSTWPASEALKM--KPDGVLFSNGPG-DPSA------------VPY------------------ 299 (415)
T ss_pred HHHHHHHHcCCeEEEECCCCCHHHHhhc--CCCEEEEcCCCC-ChhH------------hhH------------------
Confidence 4678999999999999998876666532 689999999984 3321 111
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhccc
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRD 192 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~ 192 (421)
..+.++.++ .++|+||||+|||+|+.++||++.+.. +|+ ++..|+|...... .
T Consensus 300 ~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~K~~---~Gh----------------~G~n~pV~~~~~~-------~ 352 (415)
T PLN02771 300 AVETVKELL-GKVPVFGICMGHQLLGQALGGKTFKMK---FGH----------------HGGNHPVRNNRTG-------R 352 (415)
T ss_pred HHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEEECC---CCc----------------ccceEEEEECCCC-------C
Confidence 123444444 479999999999999999999998864 331 1235666543211 1
Q ss_pred ccccCceeEEEeccccccc--cccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEEEEccccCccCC
Q 041791 193 SLEENKMEIMVNSYHHQGV--KKLAQRFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRN 258 (421)
Q Consensus 193 ~l~~~~~~~~V~s~H~~~V--~~L~~g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (421)
...+++||+++| ..||.++++++.+ +|+.+||+++++ .+++|||||||..+.
T Consensus 353 -------v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~-------~pi~gVQFHPEa~pg 407 (415)
T PLN02771 353 -------VEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPA-------LNVMSLQYHPEASPG 407 (415)
T ss_pred -------EEEEecCHHHhhccccCCCceEEEEEeCCCCcEEEEEECC-------CCEEEEEcCCCCCCC
Confidence 345789999999 5799999999987 799999999997 799999999998763
No 48
>PLN02327 CTP synthase
Probab=99.91 E-value=1.1e-23 Score=220.82 Aligned_cols=175 Identities=19% Similarity=0.247 Sum_probs=123.5
Q ss_pred hhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHH
Q 041791 58 LESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVL 137 (421)
Q Consensus 58 ~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlL 137 (421)
++.|+.+|||++|||+. ++. . ...+..+++++++++|+||||+|||++
T Consensus 357 ~~~L~~~DGIvvpGGfG-~~~---~----------------------------~G~i~ai~~are~~iP~LGIClGmQl~ 404 (557)
T PLN02327 357 WKLLKGADGILVPGGFG-DRG---V----------------------------EGKILAAKYARENKVPYLGICLGMQIA 404 (557)
T ss_pred HHhhccCCEEEeCCCCC-Ccc---c----------------------------ccHHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 35688999999999962 110 0 012456799999999999999999999
Q ss_pred HHHhCCccccc---chhhhccccCCCceeee-cc-------ccCCCCceeEEEEc-cCCcchhhcccccccCceeEEEec
Q 041791 138 NVACGGTLYQD---IEKEISKNCSLGQRVVH-MN-------YENYDGHRHLVKVV-EDTPLHQWFRDSLEENKMEIMVNS 205 (421)
Q Consensus 138 ava~GG~v~~~---~~~e~g~~~~~~~~v~H-~~-------~~~~~~~~h~V~i~-~~s~L~~~~~~~l~~~~~~~~V~s 205 (421)
++++|+++... .+.|+....+ ..+.. +. ...++.+.+.+.+. ++|.++++|+.. ..|++
T Consensus 405 viefaRnvlG~~dAnS~Efdp~t~--~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~-------~~Vne 475 (557)
T PLN02327 405 VIEFARSVLGLKDANSTEFDPETP--NPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNV-------SFVDE 475 (557)
T ss_pred HHHHHHhhcCCcCCCccccCCCCC--CCEEEEehhcccccCCceEECCCcccccCCCCCHHHHHhCCc-------cceee
Confidence 99999987542 2445542211 11111 11 11234445555665 789999999862 23555
Q ss_pred ccc--ccc-----ccc-CCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHH
Q 041791 206 YHH--QGV-----KKL-AQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEF 276 (421)
Q Consensus 206 ~H~--~~V-----~~L-~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~F 276 (421)
.|+ |.| +.+ ..+++++|++.|| .||++|+++ |+|++|+|||||+.+.+.. ..++|..|
T Consensus 476 rHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~------~pffvGVQfHPE~~s~p~~-------~~pLF~~F 542 (557)
T PLN02327 476 RHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPS------HPFFVGVQFHPEFKSRPGK-------PSPLFLGL 542 (557)
T ss_pred eeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCC------CCEEEEEEcCCCCCCCCCC-------chHHHHHH
Confidence 555 444 455 5899999999887 899999987 5788899999999876543 47899999
Q ss_pred HHHHHHHHHh
Q 041791 277 VKAVIAYEKK 286 (421)
Q Consensus 277 v~a~~~~~~~ 286 (421)
+++|.+..+.
T Consensus 543 v~Aa~~~~~~ 552 (557)
T PLN02327 543 IAAASGQLDA 552 (557)
T ss_pred HHHHHHhHHh
Confidence 9999875543
No 49
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.90 E-value=8.5e-23 Score=190.22 Aligned_cols=188 Identities=18% Similarity=0.207 Sum_probs=122.4
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+++|+|+...+.. .+++++++.+|+.++.++. .+ .++.+||||||||++. .++.
T Consensus 1 ~m~~~i~~~~g~~---------~~~~~~l~~~g~~~~~~~~---~~----~l~~~dgiii~GG~~~---~~~~------- 54 (189)
T PRK13525 1 MMKIGVLALQGAV---------REHLAALEALGAEAVEVRR---PE----DLDEIDGLILPGGEST---TMGK------- 54 (189)
T ss_pred CCEEEEEEcccCH---------HHHHHHHHHCCCEEEEeCC---hh----HhccCCEEEECCCChH---HHHH-------
Confidence 3578888876432 1345778999999998873 22 2457999999999631 1110
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
+.| +....++++.+.++++|+||||+|+|+|+.++||.... .+|- .+ ..+....
T Consensus 55 --~~~---------------~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~----~lg~-~~--~~v~~~~-- 108 (189)
T PRK13525 55 --LLR---------------DFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQE----HLGL-LD--ITVRRNA-- 108 (189)
T ss_pred --HHH---------------hccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCC----ceee-EE--EEEEEcc--
Confidence 100 01123678888899999999999999999999885111 1220 00 0000000
Q ss_pred CCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 170 NYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 170 ~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
.++..-.. ..++++...++ .+.++.+|++.|..+|++++++|+++ +.+++++. .++||+
T Consensus 109 ---~g~~~g~~-~~~~~~~~~~~-------~~~~~~~H~d~v~~lp~~~~vlA~~~-~~~~~~~~---------~~~~g~ 167 (189)
T PRK13525 109 ---FGRQVDSF-EAELDIKGLGE-------PFPAVFIRAPYIEEVGPGVEVLATVG-GRIVAVRQ---------GNILAT 167 (189)
T ss_pred ---CCCceeeE-EecccccCCCC-------CeEEEEEeCceeeccCCCcEEEEEcC-CEEEEEEe---------CCEEEE
Confidence 00111101 11233333333 57899999999999999999999985 45667764 479999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
|||||++.. .+||++|++.|.
T Consensus 168 QfHPE~~~~-----------~~~~~~f~~~~~ 188 (189)
T PRK13525 168 SFHPELTDD-----------TRVHRYFLEMVK 188 (189)
T ss_pred EeCCccCCC-----------chHHHHHHHHhh
Confidence 999999752 589999999885
No 50
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.90 E-value=1.1e-22 Score=224.64 Aligned_cols=198 Identities=22% Similarity=0.371 Sum_probs=142.0
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHC-CCeEEEEcCCC-Chhhhhh---hcCCcCEEEECCCCCCCCCCccccccC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSY-GAVPVIVPRVT-GVHMLLE---SFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~-~~~~l~~---~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
+|+++.+.+++..++++++ ... |+.|++++.+. +.+++.. .+..+|||||+|||. +|..
T Consensus 83 ~iLlIDnyDSfTyNL~~~L--------~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG-~P~~------- 146 (918)
T PLN02889 83 RTLLIDNYDSYTYNIYQEL--------SIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPG-SPTC------- 146 (918)
T ss_pred eEEEEeCCCchHHHHHHHH--------HHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCC-Cccc-------
Confidence 7999999988777766655 334 88888888763 4444432 134789999999985 2321
Q ss_pred CChhhHHHHHhhccCccccchhhhH-HHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeee
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDT-IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVH 165 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~-~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H 165 (421)
..|. ....++..+ .++||||||||||+|+.++||++.+....+.|
T Consensus 147 ---------------------~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~HG----------- 192 (918)
T PLN02889 147 ---------------------PADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEPVHG----------- 192 (918)
T ss_pred ---------------------hHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCceee-----------
Confidence 0111 122333332 47999999999999999999999876432333
Q ss_pred ccccCCCCceeEEEEccCCcchhhcccccccCceeEEEecccccccc--ccCCCeEEEEEeCC-----------------
Q 041791 166 MNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK--KLAQRFVPMAFASD----------------- 226 (421)
Q Consensus 166 ~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~--~L~~g~~vla~s~d----------------- 226 (421)
....|.. .++.+|..+++.. ...|.|..||+..|+ .||.+++++||+.+
T Consensus 193 --------~~s~I~h-~~~~lF~glp~~~---~~~f~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~ 260 (918)
T PLN02889 193 --------RLSEIEH-NGCRLFDDIPSGR---NSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPD 260 (918)
T ss_pred --------eeeeEee-cCchhhcCCCcCC---CCCceEEeCCCcccccCCCCCceEEEEEECCCcccccccccccccccc
Confidence 1233433 3455776665310 014789999999984 69999999998755
Q ss_pred ------------------------------------CeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhh
Q 041791 227 ------------------------------------GLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCK 270 (421)
Q Consensus 227 ------------------------------------g~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~ 270 (421)
+.++|++|++ .|+||||||||...++.+ .
T Consensus 261 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~-------~P~~GVQfHPESi~t~~G--------~ 325 (918)
T PLN02889 261 AYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHST-------RPHYGLQFHPESIATCYG--------R 325 (918)
T ss_pred cccccccccccccccccccccccccccccccccCCCCeeEEEEECC-------CceEEEEeCCccccCchh--------H
Confidence 6899999997 899999999999988664 7
Q ss_pred HHHHHHHHHHHHHHHh
Q 041791 271 SAYQEFVKAVIAYEKK 286 (421)
Q Consensus 271 ~lf~~Fv~a~~~~~~~ 286 (421)
.+|++|++++..+.++
T Consensus 326 ~l~~nF~~~~~~~~~~ 341 (918)
T PLN02889 326 QIFKNFREITQDYWLR 341 (918)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988644
No 51
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.89 E-value=1.7e-22 Score=194.16 Aligned_cols=178 Identities=20% Similarity=0.257 Sum_probs=126.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+.+|+|+-+-.... .....+++...|..+.+++...+. .....+..+|||||+||+. +.|++..
T Consensus 2 m~~ilviqh~~~e~-------~g~i~~~L~~~g~~~~v~~~~~~~-~~~~~~~~~d~lii~Ggp~---~~~d~~~----- 65 (234)
T PRK07053 2 MKTAVAIRHVAFED-------LGSFEQVLGARGYRVRYVDVGVDD-LETLDALEPDLLVVLGGPI---GVYDDEL----- 65 (234)
T ss_pred CceEEEEECCCCCC-------ChHHHHHHHHCCCeEEEEecCCCc-cCCCCccCCCEEEECCCCC---CCCCCCc-----
Confidence 34677777653211 122466788899888777654321 1122345799999999972 1233221
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
.+|+ ..+..+++.+++.++|+||||+|+|+|+.++||++.+....|+|
T Consensus 66 --~p~~---------------~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G--------------- 113 (234)
T PRK07053 66 --YPFL---------------APEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGGQKEIG--------------- 113 (234)
T ss_pred --CCcH---------------HHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCCCCeEe---------------
Confidence 1233 12568889999999999999999999999999999864323443
Q ss_pred CCCCceeEEEEccC---CcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 041791 170 NYDGHRHLVKVVED---TPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFI 246 (421)
Q Consensus 170 ~~~~~~h~V~i~~~---s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i 246 (421)
|.+|.+++. +++.. ++. .+.+.++|++.+ .||++++++|+++++.+++|+.. .++
T Consensus 114 -----~~~i~~t~~g~~~pl~~-~~~-------~~~~~~~H~d~~-~lP~ga~~La~s~~~~~qaf~~g--------~~~ 171 (234)
T PRK07053 114 -----WAPLTLTDAGRASPLRH-LGA-------GTPVLHWHGDTF-DLPEGATLLASTPACRHQAFAWG--------NHV 171 (234)
T ss_pred -----EEEEEEeccccCChhhc-CCC-------cceEEEEeCCEE-ecCCCCEEEEcCCCCCeeEEEeC--------CCE
Confidence 778887653 33332 332 567889999998 69999999999999999999985 479
Q ss_pred EEEccccCccC
Q 041791 247 MGLQFHPERMR 257 (421)
Q Consensus 247 ~GvQFHPE~~~ 257 (421)
+|+|||||.+.
T Consensus 172 ~g~QfHpE~~~ 182 (234)
T PRK07053 172 LALQFHPEARE 182 (234)
T ss_pred EEEeeCccCCH
Confidence 99999999874
No 52
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.89 E-value=3.1e-22 Score=219.70 Aligned_cols=199 Identities=17% Similarity=0.176 Sum_probs=133.8
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
.+.+|+|+.+.++.+..+++++. .+...++.+++++++....++...+..+|||||+|||. +|. ..
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~-----~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG-~p~--~~------ 69 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLE-----QQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPG-NPN--NA------ 69 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHH-----HhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCC-Ccc--ch------
Confidence 35789999999887666655442 22222355677777654333333456799999999985 231 00
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHHHc----CCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceee
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCLER----NIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVV 164 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~----~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~ 164 (421)
.+..+++.+++. ++||||||+|||+|+.++||++.+....+.|
T Consensus 70 -----------------------~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG---------- 116 (742)
T TIGR01823 70 -----------------------QDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHG---------- 116 (742)
T ss_pred -----------------------hhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCcC----------
Confidence 012344555543 5999999999999999999998765422222
Q ss_pred eccccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccc-cCCC--eEEEEEeCC-CeEEEEEeCCCCCC
Q 041791 165 HMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKK-LAQR--FVPMAFASD-GLIEGFYDPDAYNP 240 (421)
Q Consensus 165 H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~-L~~g--~~vla~s~d-g~ieaie~~~~~~~ 240 (421)
..+.|.... ..++..++ .+.+++||++.+.. .++. +.+++.+.+ +.++|+++++
T Consensus 117 ---------~~~~v~~~~-~~lf~gl~--------~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~---- 174 (742)
T TIGR01823 117 ---------QVYEMHTND-AAIFCGLF--------SVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKK---- 174 (742)
T ss_pred ---------eEEEEEECC-ccccCCCC--------CCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcC----
Confidence 234454432 33444443 35788999998854 3444 455665554 4899999997
Q ss_pred CCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 041791 241 QEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEKK 286 (421)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~~ 286 (421)
.++||||||||+..+..+ ..++|++|++++.++.++
T Consensus 175 ---~pi~GVQFHPE~~~s~~g-------~~~Lf~nFl~~~~~~~~~ 210 (742)
T TIGR01823 175 ---KPWFGVQYHPESCCSELG-------SGKLVSNFLKLAFINNVK 210 (742)
T ss_pred ---CceEEEEeCcccCCCCcc-------HHHHHHHHHHHHHHhhhh
Confidence 789999999999776543 378999999999988654
No 53
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.89 E-value=1.2e-22 Score=192.11 Aligned_cols=190 Identities=18% Similarity=0.175 Sum_probs=125.9
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCe--EEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV--PVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~--~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+|+|+.-..- .+ .++.++|++.|+. +..+ .++++ ++.+|||||||+... ..
T Consensus 3 ~~~iid~g~g-------n~-~s~~~al~~~g~~~~v~~~---~~~~~----l~~~d~lIlpG~~~~-----~~------- 55 (209)
T PRK13146 3 TVAIIDYGSG-------NL-RSAAKALERAGAGADVVVT---ADPDA----VAAADRVVLPGVGAF-----AD------- 55 (209)
T ss_pred eEEEEECCCC-------hH-HHHHHHHHHcCCCccEEEE---CCHHH----hcCCCEEEECCCCcH-----HH-------
Confidence 6777765532 12 4567889999983 3333 34444 357999999997531 11
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH------------hCCcccccchhhhcccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA------------CGGTLYQDIEKEISKNC 157 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava------------~GG~v~~~~~~e~g~~~ 157 (421)
.+.+++.. .....+++.+.+.++|+||||+|||+|+.+ ++|++.+... .+
T Consensus 56 -~~~~l~~~------------~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~--~~--- 117 (209)
T PRK13146 56 -CMRGLRAV------------GLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQP--DG--- 117 (209)
T ss_pred -HHHHHHHC------------CcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCC--CC---
Confidence 11222110 123456677777899999999999999997 3333322100 00
Q ss_pred CCCceeeeccccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCC-eEEEEEeCC
Q 041791 158 SLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDG-LIEGFYDPD 236 (421)
Q Consensus 158 ~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg-~ieaie~~~ 236 (421)
....++ ..+|+.|.+.+++++++.+++ .+.+..+|++.+..++ +..++|+++++ .++++...
T Consensus 118 -~~~~~p-------~~G~~~v~~~~~~~lf~~~~~-------~~~v~~~Hs~~v~~~~-~~~~la~s~~~~~~~a~~~~- 180 (209)
T PRK13146 118 -PALKVP-------HMGWNTVDQTRDHPLFAGIPD-------GARFYFVHSYYAQPAN-PADVVAWTDYGGPFTAAVAR- 180 (209)
T ss_pred -CCCccC-------ccChHHeeeCCCChhccCCCC-------CCEEEEEeEEEEEcCC-CCcEEEEEcCCCEEEEEEec-
Confidence 001122 346999998888888887765 5678899999987555 56889988876 57777654
Q ss_pred CCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 237 AYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 237 ~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
.++||+|||||++.. . -..++++|++.
T Consensus 181 -------~~i~GvQFHPE~s~~-~--------G~~ll~nfl~~ 207 (209)
T PRK13146 181 -------DNLFATQFHPEKSQD-A--------GLALLRNFLAW 207 (209)
T ss_pred -------CCEEEEEcCCcccHH-H--------HHHHHHHHHhh
Confidence 589999999999853 3 27899999875
No 54
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.89 E-value=3.3e-22 Score=192.31 Aligned_cols=165 Identities=20% Similarity=0.249 Sum_probs=121.0
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCC-ccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSL-YDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~-y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
.|-.+++.+|..+.++....+ +.++..++.+|||||+||+. ++.. ++. .+|+ +. .
T Consensus 16 ~~~~~~~~~g~~~~~~~~~~g-~~~p~~~~~~d~vii~GGp~-~~~~~~~~---------~p~~----------~~---~ 71 (235)
T PRK08250 16 AYLKWAENRGYDISYSRVYAG-EALPENADGFDLLIVMGGPQ-SPRTTREE---------CPYF----------DS---K 71 (235)
T ss_pred HHHHHHHHCCCeEEEEEccCC-CCCCCCccccCEEEECCCCC-Chhhcccc---------cccc----------ch---H
Confidence 456677888977766543333 23343456899999999973 1110 111 1122 00 2
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccC---Ccchh
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVED---TPLHQ 188 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~---s~L~~ 188 (421)
.+.++++.+++.++|+||||+|+|+|+.++||+|.+....++| +++|.+++. .+++.
T Consensus 72 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G--------------------~~~v~lt~~g~~d~l~~ 131 (235)
T PRK08250 72 AEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIG--------------------YFPITLTEAGLKDPLLS 131 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCCCcee--------------------EEEEEEccccccCchhh
Confidence 3567889999999999999999999999999999876533443 778887653 34666
Q ss_pred hcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 189 WFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 189 ~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
.+++ .+.+.+||++.+ .||++++++|+++++.++++... .+++|+|||||.+.
T Consensus 132 ~~~~-------~~~v~~~H~d~~-~lP~~a~~LA~s~~~~~qa~~~~--------~~~~g~QfHPE~~~ 184 (235)
T PRK08250 132 HFGS-------TLTVGHWHNDMP-GLTDQAKVLATSEGCPRQIVQYS--------NLVYGFQCHMEFTV 184 (235)
T ss_pred cCCC-------CcEEEEEeccee-cCCCCCEEEECCCCCCceEEEeC--------CCEEEEeecCcCCH
Confidence 6665 577899999976 69999999999999999999986 47999999999874
No 55
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=7.1e-22 Score=185.48 Aligned_cols=179 Identities=20% Similarity=0.229 Sum_probs=116.1
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
-++++++.|+.++++.. .+++ +.+|+|||||+.+..+ .+.++++ ..++
T Consensus 15 v~~~l~~~g~~~~~~~~---~~~l----~~~d~lilPG~g~~~~-------------~~~~l~~------------~~~~ 62 (201)
T PRK13152 15 VAKAFEKIGAINFIAKN---PKDL----QKADKLLLPGVGSFKE-------------AMKNLKE------------LGFI 62 (201)
T ss_pred HHHHHHHCCCeEEEECC---HHHH----cCCCEEEECCCCchHH-------------HHHHHHH------------cCcH
Confidence 45778889988777653 2333 4699999999874321 0111111 1234
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHH-hCCcccccchhhhccccCCCceeeecc----ccCCCCceeEEEEccCCcchh
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVA-CGGTLYQDIEKEISKNCSLGQRVVHMN----YENYDGHRHLVKVVEDTPLHQ 188 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava-~GG~v~~~~~~e~g~~~~~~~~v~H~~----~~~~~~~~h~V~i~~~s~L~~ 188 (421)
..+.+++++.++|+||||+|||+|+++ .++...++.. .++. .+.+.. ......+|++|.+.+++++++
T Consensus 63 ~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg-~~~g------~v~~~~~~~~~~~~~~g~~~v~~~~~~~l~~ 135 (201)
T PRK13152 63 EALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLG-FIEG------EVVKFEEDLNLKIPHMGWNELEILKQSPLYQ 135 (201)
T ss_pred HHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcc-cccE------EEEECCCCCCCcCCccCeEEEEECCCChhhh
Confidence 566677778999999999999999997 3333344431 1211 111111 012345699999988888888
Q ss_pred hcccccccCceeEEEeccccccccccCCCeEEEEEeCCC--eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCC
Q 041791 189 WFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDG--LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDY 266 (421)
Q Consensus 189 ~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg--~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~ 266 (421)
.++. .+.++.+|++.+..++ ..+++++.++ .+++++. .+++|+|||||++...
T Consensus 136 ~l~~-------~~~~~~vHS~~v~~~~--~~v~a~~~~g~~~~~a~~~---------~~i~GvQFHPE~~~~~------- 190 (201)
T PRK13152 136 GIPE-------KSDFYFVHSFYVKCKD--EFVSAKAQYGHKFVASLQK---------DNIFATQFHPEKSQNL------- 190 (201)
T ss_pred CCCC-------CCeEEEEcccEeecCC--CcEEEEECCCCEEEEEEec---------CCEEEEeCCCeecChh-------
Confidence 8765 3455666666664433 4677888776 5667763 4799999999998542
Q ss_pred chhhHHHHHHHH
Q 041791 267 PGCKSAYQEFVK 278 (421)
Q Consensus 267 ~~~~~lf~~Fv~ 278 (421)
...+|++|++
T Consensus 191 --g~~ll~~Fl~ 200 (201)
T PRK13152 191 --GLKLLENFAR 200 (201)
T ss_pred --hHHHHHHHHh
Confidence 2689999985
No 56
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=2.1e-22 Score=189.38 Aligned_cols=177 Identities=21% Similarity=0.221 Sum_probs=120.6
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
...+.++..|+.+.++.. .++ ++.+||||||||...++ .+.++. .++
T Consensus 14 ~i~~~l~~~G~~v~~~~~---~~~----l~~~d~iiipG~~~~~~-------------~~~~~~-----------~~~-- 60 (205)
T PRK13141 14 SVEKALERLGAEAVITSD---PEE----ILAADGVILPGVGAFPD-------------AMANLR-----------ERG-- 60 (205)
T ss_pred HHHHHHHHCCCeEEEECC---HHH----hccCCEEEECCCCchHH-------------HHHHHH-----------HcC--
Confidence 457788999998888752 233 35799999999753111 011100 001
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHh------------CCcccccchhhhccccCCCceeeeccccCCCCceeEEEE
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVAC------------GGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKV 180 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~------------GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i 180 (421)
...+++.+.+.++|+||||+|+|+|+.++ ++++.+... + ....+. ..+++.+.+
T Consensus 61 ~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~---~----~~~~~~-------~~g~~~i~~ 126 (205)
T PRK13141 61 LDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPP---E----EGLKVP-------HMGWNQLEL 126 (205)
T ss_pred hHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCC---C----CCCccc-------EecCcccee
Confidence 24567788889999999999999999974 222221100 0 000112 235788888
Q ss_pred ccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEccccCccCCC
Q 041791 181 VEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQ 259 (421)
Q Consensus 181 ~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (421)
.+++++++.++. .+.+..+|++.+ .+++++.++|+++++ .++++... .++||||||||+...
T Consensus 127 ~~~~~l~~~l~~-------~~~v~~~Hs~~v-~~~~~~~v~a~~~~~~~~~a~~~~--------~~i~GvQfHPE~~~~- 189 (205)
T PRK13141 127 KKESPLLKGIPD-------GAYVYFVHSYYA-DPCDEEYVAATTDYGVEFPAAVGK--------DNVFGAQFHPEKSGD- 189 (205)
T ss_pred CCCChhhhCCCC-------CCEEEEECeeEe-ccCCcCeEEEEEeCCcEEEEEEec--------CCEEEEeCCCccchH-
Confidence 888888888875 456777888887 467888999988776 78888654 589999999998753
Q ss_pred CCCCCCCchhhHHHHHHHHHHH
Q 041791 260 DSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 260 ~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
. ...+|++|+++|+
T Consensus 190 ~--------g~~l~~~fl~~~~ 203 (205)
T PRK13141 190 V--------GLKILKNFVEMVE 203 (205)
T ss_pred H--------HHHHHHHHHHHhh
Confidence 2 3789999999874
No 57
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.88 E-value=3.8e-22 Score=184.70 Aligned_cols=181 Identities=22% Similarity=0.270 Sum_probs=115.3
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
-.++++++|+.+++.. +++.+. .+|+|||||-+.+ ++. +..+ +...-
T Consensus 17 v~~Aler~G~~~~vs~---d~~~i~----~AD~liLPGVGaf-----~~a--------m~~L-------------~~~gl 63 (204)
T COG0118 17 VKKALERLGAEVVVSR---DPEEIL----KADKLILPGVGAF-----GAA--------MANL-------------RERGL 63 (204)
T ss_pred HHHHHHHcCCeeEEec---CHHHHh----hCCEEEecCCCCH-----HHH--------HHHH-------------Hhcch
Confidence 4578999999888764 555544 6899999995432 221 1111 11223
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHh---CCc-ccccchhhhccccCC-CceeeeccccCCCCceeEEEEccCCcchh
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVAC---GGT-LYQDIEKEISKNCSL-GQRVVHMNYENYDGHRHLVKVVEDTPLHQ 188 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~---GG~-v~~~~~~e~g~~~~~-~~~v~H~~~~~~~~~~h~V~i~~~s~L~~ 188 (421)
.+.++...+.++|+||||+|||+|.... ++. -..-+++..- +.+. ..+++|+ +|+.+.+.++++|+.
T Consensus 64 ~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~-r~~~~~~kvPHM-------GWN~l~~~~~~~l~~ 135 (204)
T COG0118 64 IEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVV-RFPAEDLKVPHM-------GWNQVEFVRGHPLFK 135 (204)
T ss_pred HHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEE-EcCCCCCCCCcc-------ccceeeccCCChhhc
Confidence 4667777778899999999999998742 221 0000111110 1111 1366776 599999987788988
Q ss_pred hcccccccCceeEEEeccccccccccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCc
Q 041791 189 WFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYP 267 (421)
Q Consensus 189 ~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~ 267 (421)
.+++. ...++|+| |.+.. ...-.++++++.| .+-|+..+ .+++|+|||||++.+.|
T Consensus 136 gi~~~----~~~YFVHS---Y~~~~-~~~~~v~~~~~YG~~f~AaV~k--------~N~~g~QFHPEKSg~~G------- 192 (204)
T COG0118 136 GIPDG----AYFYFVHS---YYVPP-GNPETVVATTDYGEPFPAAVAK--------DNVFGTQFHPEKSGKAG------- 192 (204)
T ss_pred CCCCC----CEEEEEEE---EeecC-CCCceEEEeccCCCeeEEEEEe--------CCEEEEecCcccchHHH-------
Confidence 87651 13455554 45532 2344677777777 44444444 47999999999998876
Q ss_pred hhhHHHHHHHHHH
Q 041791 268 GCKSAYQEFVKAV 280 (421)
Q Consensus 268 ~~~~lf~~Fv~a~ 280 (421)
.+++++|++.+
T Consensus 193 --l~lL~NFl~~~ 203 (204)
T COG0118 193 --LKLLKNFLEWI 203 (204)
T ss_pred --HHHHHHHHhhc
Confidence 68999999854
No 58
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=2.3e-21 Score=181.49 Aligned_cols=175 Identities=21% Similarity=0.215 Sum_probs=113.8
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
..++|++.|+.++++. +.++ ++.+|+|||||+.... +.+.+++ +
T Consensus 16 ~~~~l~~~g~~~~~v~---~~~~----~~~~d~iIlPG~G~~~-------------~~~~~l~----------------~ 59 (196)
T PRK13170 16 VKFAIERLGYEPVVSR---DPDV----ILAADKLFLPGVGTAQ-------------AAMDQLR----------------E 59 (196)
T ss_pred HHHHHHHCCCeEEEEC---CHHH----hCCCCEEEECCCCchH-------------HHHHHHH----------------H
Confidence 4557888999888875 3333 3468999999953210 0111111 1
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHhCCcc-cccchhhhccccCCCceeeec---cccCCCCceeEEEEccCCcchhh
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTL-YQDIEKEISKNCSLGQRVVHM---NYENYDGHRHLVKVVEDTPLHQW 189 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~GG~v-~~~~~~e~g~~~~~~~~v~H~---~~~~~~~~~h~V~i~~~s~L~~~ 189 (421)
..+++.+.+.++|+||||+|||+|+.++++.. .+.. +-+. ..+.+. ....+..+|++|.+.+++++++.
T Consensus 60 ~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~l-g~~~------g~v~~~~~~~~~~p~~G~~~v~~~~~~~l~~~ 132 (196)
T PRK13170 60 RELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCL-GIID------GPVKKMTDFGLPLPHMGWNQVTPQAGHPLFQG 132 (196)
T ss_pred cChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCc-cccc------EEEEECCCCCCCCCccccceeEeCCCChhhhC
Confidence 23445555678999999999999999985432 1111 0010 111111 11233457999998878888877
Q ss_pred cccccccCceeEEEeccccccccccCCCeEEEEEeCCCe-EEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCch
Q 041791 190 FRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGL-IEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPG 268 (421)
Q Consensus 190 ~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~-ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~ 268 (421)
+++ .+.++.||++.+ |++..++|+++++. +.++... .++||+|||||++...+
T Consensus 133 l~~-------~~~v~~~Hs~~l---p~~~~~la~s~~~~~~~~~~~~--------~~i~G~QFHPE~~~~~G-------- 186 (196)
T PRK13170 133 IED-------GSYFYFVHSYAM---PVNEYTIAQCNYGEPFSAAIQK--------DNFFGVQFHPERSGAAG-------- 186 (196)
T ss_pred CCc-------CCEEEEECeeec---CCCCcEEEEecCCCeEEEEEEc--------CCEEEEECCCCCccccc--------
Confidence 765 578899999864 56677889887764 3444332 57999999999996433
Q ss_pred hhHHHHHHHH
Q 041791 269 CKSAYQEFVK 278 (421)
Q Consensus 269 ~~~lf~~Fv~ 278 (421)
..++.+|++
T Consensus 187 -~~~l~nfl~ 195 (196)
T PRK13170 187 -AQLLKNFLE 195 (196)
T ss_pred -HHHHHHHhh
Confidence 689999975
No 59
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.87 E-value=2.8e-21 Score=181.22 Aligned_cols=185 Identities=15% Similarity=0.141 Sum_probs=119.2
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|+|+.-.... .+++ ..+.++++.+|..+.++... +.+ .++.+||||||||+.- .+..
T Consensus 2 ~i~vl~~~~~~----~e~~-~~~~~~l~~~g~~~~~~~~~-~~~----~l~~~d~iii~GG~~~---~~~~--------- 59 (200)
T PRK13527 2 KIGVLALQGDV----EEHI-DALKRALDELGIDGEVVEVR-RPG----DLPDCDALIIPGGEST---TIGR--------- 59 (200)
T ss_pred EEEEEEECCcc----HHHH-HHHHHHHHhcCCCeEEEEeC-ChH----HhccCCEEEECCCcHH---HHHH---------
Confidence 56777644332 1222 23456788899866655543 222 3457999999999631 1110
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCccc-ccchhhhccccCCCceeeeccccC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLY-QDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~-~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
+.| +.....+++.+.+.++|+||||+|+|+|+.++||... .....++|
T Consensus 60 ~~~---------------~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG---------------- 108 (200)
T PRK13527 60 LMK---------------REGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLG---------------- 108 (200)
T ss_pred HHh---------------hccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceee----------------
Confidence 101 1112467788888999999999999999999988432 21111222
Q ss_pred CCCceeEEEEcc-----------CCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCC
Q 041791 171 YDGHRHLVKVVE-----------DTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYN 239 (421)
Q Consensus 171 ~~~~~h~V~i~~-----------~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~ 239 (421)
+.++.+.+ ...++..+++ .+.+..+|++.|..+|++++++|+++|+.+ +++.
T Consensus 109 ----~~~~~v~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~H~~~v~~lp~~~~~la~~~~~~~-a~~~----- 171 (200)
T PRK13527 109 ----LMDVTVKRNAFGRQRDSFEAEIDLSGLDG-------PFHAVFIRAPAITKVGGDVEVLAKLDDRIV-AVEQ----- 171 (200)
T ss_pred ----eeEEEEeeccccCccccEEEeEeccccCC-------cceEEEEccccccccCCCeEEEEEECCEEE-EEEE-----
Confidence 22222211 1122222333 678889999999999999999999988855 6653
Q ss_pred CCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 240 PQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 240 ~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
.+++|+|||||.+.. ..+|++|+++++
T Consensus 172 ----~~~~g~QfHPE~~~~-----------~~l~~~f~~~~~ 198 (200)
T PRK13527 172 ----GNVLATAFHPELTDD-----------TRIHEYFLKKVK 198 (200)
T ss_pred ----CCEEEEEeCCCCCCC-----------CHHHHHHHHHHh
Confidence 469999999997752 579999999874
No 60
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=5.3e-22 Score=185.92 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=112.8
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
++.++++..|+.++++. +.++ ++++|+||+|||++.. + .+.+++ +..
T Consensus 14 ~~~~~l~~~g~~v~~~~---~~~~----l~~~d~lilpG~g~~~-----~--------~~~~l~-------------~~~ 60 (199)
T PRK13181 14 SVANALKRLGVEAVVSS---DPEE----IAGADKVILPGVGAFG-----Q--------AMRSLR-------------ESG 60 (199)
T ss_pred HHHHHHHHCCCcEEEEc---ChHH----hccCCEEEECCCCCHH-----H--------HHHHHH-------------HCC
Confidence 45668889999888773 3333 3479999999975311 1 111111 111
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecc---ccCCCCceeEEEEccCCcchhh
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMN---YENYDGHRHLVKVVEDTPLHQW 189 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~---~~~~~~~~h~V~i~~~s~L~~~ 189 (421)
....++.+++.++|+||||+|+|+|+.+......+.. +.++. .+.+.. ......+|+.+.+.+++++++.
T Consensus 61 ~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~gl-g~l~~------~v~~~~~~~~~~~~~G~~~v~~~~~~~lf~~ 133 (199)
T PRK13181 61 LDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGL-GLIPG------DVKRFRSEPLKVPQMGWNSVKPLKESPLFKG 133 (199)
T ss_pred hHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCc-ceEEE------EEEEcCCCCCCCCccCccccccCCCChhHcC
Confidence 2355677778999999999999999998432111111 00110 011100 0112345888888777888888
Q ss_pred cccccccCceeEEEeccccccccccCCCeEEEEEeCCCe--EEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCc
Q 041791 190 FRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGL--IEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYP 267 (421)
Q Consensus 190 ~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~--ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~ 267 (421)
+++ .+.++.+|++.+...+. +.++|++++|. +++++. .++||+|||||++.. .
T Consensus 134 l~~-------~~~~~~~Hs~~v~~~~~-~~~lA~s~~~~~~~~~~~~---------~~i~GvQFHPE~~~~-~------- 188 (199)
T PRK13181 134 IEE-------GSYFYFVHSYYVPCEDP-EDVLATTEYGVPFCSAVAK---------DNIYAVQFHPEKSGK-A------- 188 (199)
T ss_pred CCC-------CCEEEEeCeeEeccCCc-ccEEEEEcCCCEEEEEEEC---------CCEEEEECCCccCCH-H-------
Confidence 875 45678888888754443 56888887653 344442 469999999998742 2
Q ss_pred hhhHHHHHHHH
Q 041791 268 GCKSAYQEFVK 278 (421)
Q Consensus 268 ~~~~lf~~Fv~ 278 (421)
...++++|++
T Consensus 189 -g~~ll~nfl~ 198 (199)
T PRK13181 189 -GLKLLKNFAE 198 (199)
T ss_pred -HHHHHHHHHh
Confidence 3789999975
No 61
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=2.4e-21 Score=181.91 Aligned_cols=196 Identities=19% Similarity=0.173 Sum_probs=125.3
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|+|+...+. ++ ..+.++++.+|+.+++++. .+ .++.+|||||+||.+ |. +.
T Consensus 2 ~~~v~~~~~~-------~~-~~~~~~l~~~G~~~~~~~~---~~----~~~~~d~iii~G~~~-----~~--------~~ 53 (200)
T PRK13143 2 MIVIIDYGVG-------NL-RSVSKALERAGAEVVITSD---PE----EILDADGIVLPGVGA-----FG--------AA 53 (200)
T ss_pred eEEEEECCCc-------cH-HHHHHHHHHCCCeEEEECC---HH----HHccCCEEEECCCCC-----HH--------HH
Confidence 4666665532 23 4578899999999888752 22 235799999998642 11 12
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh-CCcccccchhhhccccCCCceeeeccccC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC-GGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~-GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
++|++ ...+.++.++++++|+||||+|+|+|+.++ +|+..++.. -++.... ...+.. ..
T Consensus 54 ~~~~~---------------~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg-~~~g~v~---~~~~~~-~~ 113 (200)
T PRK13143 54 MENLS---------------PLRDVILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLG-LFPGRVV---RFPAGV-KV 113 (200)
T ss_pred HHHHH---------------HHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcc-eeeEEEE---EcCCCC-CC
Confidence 23332 134667888899999999999999999763 444444321 1111100 000000 01
Q ss_pred CCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEE
Q 041791 171 YDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 171 ~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~Gv 249 (421)
...+++.+.+..++++++.++. ..+..+|++.+. +++++.++|+++++ .++++... .++||+
T Consensus 114 ~~~g~~~v~~~~~~~l~~~l~~--------~~~~~~Hs~~~~-~~~~~~~la~~~~~~~~~~~~~~--------~~~~gv 176 (200)
T PRK13143 114 PHMGWNTVKVVKDCPLFEGIDG--------EYVYFVHSYYAY-PDDEDYVVATTDYGIEFPAAVCN--------DNVFGT 176 (200)
T ss_pred CeecceEEEEcCCChhhccCCC--------cEEEEEeeeeeC-CCCcceEEEEEcCCCEEEEEEEc--------CCEEEE
Confidence 1225788888777777765532 235567887764 56678999999886 45555543 589999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
|||||++.. . ..++|++|++.+.
T Consensus 177 QfHPE~~~~-~--------g~~i~~~f~~~~~ 199 (200)
T PRK13143 177 QFHPEKSGE-T--------GLKILENFVELIK 199 (200)
T ss_pred eCCCccchH-H--------HHHHHHHHHHHHh
Confidence 999999743 2 3689999998763
No 62
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.87 E-value=5e-22 Score=185.73 Aligned_cols=172 Identities=18% Similarity=0.235 Sum_probs=113.6
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
..++|+..|+.+++++.. ++ ++++|+||||||... .+. ++++ ++...
T Consensus 14 ~~~~l~~~g~~v~v~~~~---~~----l~~~d~iiipG~~~~-----~~~--------~~~~-------------~~~~~ 60 (198)
T cd01748 14 VANALERLGAEVIITSDP---EE----ILSADKLILPGVGAF-----GDA--------MANL-------------RERGL 60 (198)
T ss_pred HHHHHHHCCCeEEEEcCh---HH----hccCCEEEECCCCcH-----HHH--------HHHH-------------HHcCh
Confidence 467888999988888732 22 357999999887431 110 0001 11112
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHh------------CCcccccchhhhccccCCCceeeeccccCCCCceeEEEEc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVAC------------GGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVV 181 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~------------GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~ 181 (421)
.+.++.+.++++|+||||+|||+|+.+. +|++.+.... ......| .+++.+.+.
T Consensus 61 ~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~-------~~~~~~~-------~G~~~v~~~ 126 (198)
T cd01748 61 IEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPAS-------EGLKVPH-------MGWNQLEIT 126 (198)
T ss_pred HHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCC-------CCceEEE-------eccceEEEC
Confidence 4677888888999999999999999983 2332221100 0001112 247888887
Q ss_pred cCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEccccCccCCCC
Q 041791 182 EDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQD 260 (421)
Q Consensus 182 ~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (421)
++++++..+++ .+.+..+|++.+.. ++.+.++|+++++ .++++... .++||+|||||++.. .
T Consensus 127 ~~~~lf~~l~~-------~~~v~~~Hs~~v~~-~~~~~~la~s~~~~~~~~~~~~--------~~i~GvQFHPE~~~~-~ 189 (198)
T cd01748 127 KESPLFKGIPD-------GSYFYFVHSYYAPP-DDPDYILATTDYGGKFPAAVEK--------DNIFGTQFHPEKSGK-A 189 (198)
T ss_pred CCChhhhCCCC-------CCeEEEEeEEEEec-CCcceEEEEecCCCeEEEEEEc--------CCEEEEECCCccccH-h
Confidence 77888776665 56788999999864 4557788988776 45555433 589999999999854 2
Q ss_pred CCCCCCchhhHHHHHHH
Q 041791 261 SDNFDYPGCKSAYQEFV 277 (421)
Q Consensus 261 ~~~~d~~~~~~lf~~Fv 277 (421)
...++++|+
T Consensus 190 --------g~~~~~nf~ 198 (198)
T cd01748 190 --------GLKLLKNFL 198 (198)
T ss_pred --------HHHHHHhhC
Confidence 367888884
No 63
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.87 E-value=8.7e-22 Score=186.40 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=121.3
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|+|+.-.. ++ + .++.++++.+|+.+++++. .++ ++.+|+||+||+.+.++.
T Consensus 3 ~v~iid~~~---GN----~-~sl~~al~~~g~~v~vv~~---~~~----l~~~d~iIlPG~g~~~~~------------- 54 (210)
T CHL00188 3 KIGIIDYSM---GN----L-HSVSRAIQQAGQQPCIINS---ESE----LAQVHALVLPGVGSFDLA------------- 54 (210)
T ss_pred EEEEEEcCC---cc----H-HHHHHHHHHcCCcEEEEcC---HHH----hhhCCEEEECCCCchHHH-------------
Confidence 577777541 11 1 3457788999999988863 223 346899999996543211
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhcccc---C--CCceeeec
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNC---S--LGQRVVHM 166 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~---~--~~~~v~H~ 166 (421)
+.+++ +......++.+++.++|+||||+|||+|+...++...+... -++.++ + ...+++|
T Consensus 55 ~~~l~-------------~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg-~~~G~v~~~~~~~~~~~p~- 119 (210)
T CHL00188 55 MKKLE-------------KKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLG-IYKGQVKRLKHSPVKVIPH- 119 (210)
T ss_pred HHHHH-------------HCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCcc-ceeEEEEECCCCCCCccCc-
Confidence 11221 11122456666788999999999999999887654332211 111110 0 0013334
Q ss_pred cccCCCCceeEEEEccC------CcchhhcccccccCceeEEEeccccccccccCCCeEEE-EEe---CCCeEEEEEeCC
Q 041791 167 NYENYDGHRHLVKVVED------TPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPM-AFA---SDGLIEGFYDPD 236 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~------s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vl-a~s---~dg~ieaie~~~ 236 (421)
.+|.+|.+..+ +.+++.+++ .+.++.+|++.|. |++...+ +++ .++.+++++.
T Consensus 120 ------~Gw~~v~~~~~~~~~~~~~lf~~l~~-------~~~v~~~HS~~v~--p~~~~~l~~t~~~~~~~~v~a~~~-- 182 (210)
T CHL00188 120 ------MGWNRLECQNSECQNSEWVNWKAWPL-------NPWAYFVHSYGVM--PKSQACATTTTFYGKQQMVAAIEY-- 182 (210)
T ss_pred ------cCCccceecCCcccccCChhhcCCCC-------CCEEEEeCccEec--CCCCceEEEEEecCCcceEEEEec--
Confidence 35999988654 456666665 6788999999874 3344434 333 2556999985
Q ss_pred CCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 237 AYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 237 ~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
.+++|+|||||++. ..+ ..++++|++.
T Consensus 183 -------~~i~GvQFHPE~s~-~~G--------~~il~nfl~~ 209 (210)
T CHL00188 183 -------DNIFAMQFHPEKSG-EFG--------LWLLREFMKK 209 (210)
T ss_pred -------CCEEEEecCCcccc-HhH--------HHHHHHHHhh
Confidence 36999999999984 333 6899999864
No 64
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.84 E-value=1.2e-20 Score=176.60 Aligned_cols=170 Identities=20% Similarity=0.213 Sum_probs=110.7
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
..+.++..|+.+.+++.. +. ++.+|+||+||+.+. . +.+++++. ...
T Consensus 14 l~~~l~~~g~~v~v~~~~---~~----l~~~d~lii~G~~~~-----~--------~~~~~l~~-------------~~~ 60 (196)
T TIGR01855 14 VKRALKRVGAEPVVVKDS---KE----AELADKLILPGVGAF-----G--------AAMARLRE-------------NGL 60 (196)
T ss_pred HHHHHHHCCCcEEEEcCH---HH----hccCCEEEECCCCCH-----H--------HHHHHHHH-------------cCc
Confidence 456778899988888732 22 357999999986421 1 11223221 101
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHh------------CCcccccchhhhccccCCCceeeeccccCCCCceeEEEEc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVAC------------GGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVV 181 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~------------GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~ 181 (421)
..+++.+.+.++|+||||+|+|+|+.++ |+++.+.... .....+|..+.+.
T Consensus 61 ~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~-----------------~~~~~g~~~~~~~ 123 (196)
T TIGR01855 61 DLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEAR-----------------KVPHMGWNEVHPV 123 (196)
T ss_pred HHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCC-----------------CCCcccCeeeeeC
Confidence 2444777889999999999999999983 3333322100 0112247777777
Q ss_pred cCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEccccCccCCCC
Q 041791 182 EDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQD 260 (421)
Q Consensus 182 ~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (421)
.+++++..+++ .+.++.||++.+...+ + .+++.+++| .++++. .. .++||+|||||++.. .
T Consensus 124 ~~~~l~~~l~~-------~~~v~~~Hs~~v~~~~-~-~~~a~~~~g~~~~~~~-~~-------~~i~GvQFHPE~~~~-~ 185 (196)
T TIGR01855 124 KESPLLNGIDE-------GAYFYFVHSYYAVCEE-E-AVLAYADYGEKFPAAV-QK-------GNIFGTQFHPEKSGK-T 185 (196)
T ss_pred CCChHHhCCCC-------CCEEEEECeeEecCCC-C-cEEEEEcCCcEEEEEE-ec-------CCEEEEECCCccCcH-h
Confidence 67778877765 6788999999986444 4 456766665 444443 33 579999999998753 2
Q ss_pred CCCCCCchhhHHHHHHHHH
Q 041791 261 SDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 261 ~~~~d~~~~~~lf~~Fv~a 279 (421)
...++++|+++
T Consensus 186 --------g~~ll~~f~~~ 196 (196)
T TIGR01855 186 --------GLKLLENFLEL 196 (196)
T ss_pred --------HHHHHHHHHhC
Confidence 47899999863
No 65
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.84 E-value=7.5e-21 Score=191.81 Aligned_cols=202 Identities=24% Similarity=0.411 Sum_probs=145.4
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
++.--.|+|+...+. |...+ -|.+++.-....++|.+.....+.+ -.+-||||+|||+ +.|.++..
T Consensus 13 ~~~~d~i~iLD~GaQ----Y~~~I----~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~---SVya~dAP- 78 (552)
T KOG1622|consen 13 SSYFDTILILDFGAQ----YGKVI----DRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPN---SVYAEDAP- 78 (552)
T ss_pred cccCceEEEEeccch----hhHHH----HHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCC---ccccCcCC-
Confidence 344456777765432 22223 2456667777788998887777665 3789999999984 45776553
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
+ +|+ ++ .+-++|+||||+|||+||..+||++.+...+|.|
T Consensus 79 --------------~---~dp-------~i----f~~~vpvLGICYGmQ~i~~~~Gg~V~~~~~RE~G------------ 118 (552)
T KOG1622|consen 79 --------------S---FDP-------AI----FELGVPVLGICYGMQLINKLNGGTVVKGMVREDG------------ 118 (552)
T ss_pred --------------C---CCh-------hH----hccCCcceeehhHHHHHHHHhCCccccccccCCC------------
Confidence 1 222 12 3457999999999999999999999887666665
Q ss_pred cccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 041791 167 NYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFI 246 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i 246 (421)
..+|.+...+.+|+.+.+. ....|+..|++.+..++.+|+++|++.+..+.++.+.. +++
T Consensus 119 --------~~eI~v~~~~~lF~~~~~~-----~~~~VlltHgdsl~~v~~g~kv~a~s~n~~va~i~~e~-------kki 178 (552)
T KOG1622|consen 119 --------EDEIEVDDSVDLFSGLHKT-----EFMTVLLTHGDSLSKVPEGFKVVAFSGNKPVAGILNEL-------KKI 178 (552)
T ss_pred --------CceEEcCchhhhhhhhccc-----ceeeeeeccccchhhccccceeEEeecCcceeeehhhh-------hhh
Confidence 3566666666677766542 13368999999999999999999999988899999886 899
Q ss_pred EEEccccCccCCCCCCC------CCCchhhHHH--HHHHHHHHH
Q 041791 247 MGLQFHPERMRNQDSDN------FDYPGCKSAY--QEFVKAVIA 282 (421)
Q Consensus 247 ~GvQFHPE~~~~~~~~~------~d~~~~~~lf--~~Fv~a~~~ 282 (421)
+|+|||||.++++.+.. ||+|+|..-| ++|.+.|..
T Consensus 179 yglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e~I~ 222 (552)
T KOG1622|consen 179 YGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEECIN 222 (552)
T ss_pred hcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhhhhHHHHH
Confidence 99999999999887742 3444444444 445555533
No 66
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=7.1e-20 Score=173.37 Aligned_cols=181 Identities=18% Similarity=0.223 Sum_probs=113.4
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
+-.+++..+|..++.+. +++++ +.+|+||+||+.+.+ . .+.+++ ...
T Consensus 14 s~~~al~~~~~~~~~~~---~~~~l----~~~d~iIlPG~g~~~-----~--------~~~~l~-------------~~g 60 (210)
T PRK14004 14 SCLKAVSLYTKDFVFTS---DPETI----ENSKALILPGDGHFD-----K--------AMENLN-------------STG 60 (210)
T ss_pred HHHHHHHHcCCeEEEEC---CHHHh----ccCCEEEECCCCchH-----H--------HHHHHH-------------HcC
Confidence 34678899998877663 44443 479999999986422 1 122222 112
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcc-------cccc---hhhhccccC-CCceeeeccccCCCCceeEEEEc
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTL-------YQDI---EKEISKNCS-LGQRVVHMNYENYDGHRHLVKVV 181 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~GG~v-------~~~~---~~e~g~~~~-~~~~v~H~~~~~~~~~~h~V~i~ 181 (421)
....++.+.+.++|+||||+|||+|+.+++-.. .+.. ..+.. +.+ ....++|+ +|..|.+.
T Consensus 61 l~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~-~~~~~~~~~ph~-------Gw~~v~~~ 132 (210)
T PRK14004 61 LRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIK-KFEGKDFKVPHI-------GWNRLQIR 132 (210)
T ss_pred cHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEE-EcCCCCCcCCcc-------Ccccceec
Confidence 235566667889999999999999999875210 0000 00000 000 01234454 58888875
Q ss_pred --cCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCC-Ce-EEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 182 --EDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASD-GL-IEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 182 --~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~d-g~-ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
.+++++..+++ .+.++.||++.+. .+..+.+++++.+ +. +.++... .+++|+|||||++.
T Consensus 133 ~~~~~~lf~~l~~-------~~~v~~~HS~~~~-~~~~l~~sa~~~~~g~~~~a~~~~--------~~i~GvQFHPE~s~ 196 (210)
T PRK14004 133 RKDKSKLLKGIGD-------QSFFYFIHSYRPT-GAEGNAITGLCDYYQEKFPAVVEK--------ENIFGTQFHPEKSH 196 (210)
T ss_pred cCCCCccccCCCC-------CCEEEEeceeecC-CCCcceEEEeeeECCEEEEEEEec--------CCEEEEeCCcccCc
Confidence 35567776665 5678899998552 2333455666555 53 5556543 57999999999998
Q ss_pred CCCCCCCCCchhhHHHHHHHHH
Q 041791 258 NQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 258 ~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
+ .+ ..++++|++.
T Consensus 197 ~-~G--------~~iL~nfl~~ 209 (210)
T PRK14004 197 T-HG--------LKLLENFIEF 209 (210)
T ss_pred h-hH--------HHHHHHHHhh
Confidence 5 33 6899999874
No 67
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.82 E-value=4e-19 Score=170.04 Aligned_cols=199 Identities=21% Similarity=0.254 Sum_probs=124.6
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|+|+.-+.... ...++++++.+|+.+++++.... . ++.+||||||||.+ |++...
T Consensus 2 ~v~Vl~~~G~n~-------~~~~~~al~~~G~~~~~i~~~~~--~----l~~~d~lilpGG~~-----~~d~~~------ 57 (227)
T TIGR01737 2 KVAVIRFPGTNC-------DRDTVYALRLLGVDAEIVWYEDG--S----LPDYDGVVLPGGFS-----YGDYLR------ 57 (227)
T ss_pred eEEEEeCCCcCc-------HHHHHHHHHHCCCeEEEEecCCC--C----CCCCCEEEECCCCc-----cccccc------
Confidence 688888875532 22346889999999998875432 1 45799999999963 222110
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH--hCCcccccchhhhccccCCCceeeecccc
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava--~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
. ... .++.....+++.+.+.++|++|||.|+|+|+.+ ++|++.+....+++
T Consensus 58 --------~--~~~--~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~--------------- 110 (227)
T TIGR01737 58 --------A--GAI--AAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFI--------------- 110 (227)
T ss_pred --------c--cch--hcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCCceE---------------
Confidence 0 000 111223467788888999999999999999996 77777665433332
Q ss_pred CCCCceeEEEEcc-CCcchhhcccccccCceeEEEeccccccc--------cccCCCeEEEEEe------------CCC-
Q 041791 170 NYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQGV--------KKLAQRFVPMAFA------------SDG- 227 (421)
Q Consensus 170 ~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~V--------~~L~~g~~vla~s------------~dg- 227 (421)
..|..+++.. ++++++.++.. ..+.....|+++- +.|..+..++++. ++|
T Consensus 111 ---~~~~~~~v~~~~~~~~~~~~~g-----~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs 182 (227)
T TIGR01737 111 ---CRWVYLRVENADTIFTKNYKKG-----EVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGS 182 (227)
T ss_pred ---EEeEEEEECCCCChhhccCCCC-----CEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCC
Confidence 1255666644 35666655431 1334433455442 3465666655543 333
Q ss_pred --eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 228 --LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 228 --~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
.|++|.+++ .+++|+|||||+...+.... +.-..+|++|++.
T Consensus 183 ~~~i~~i~~~~-------~~~~g~~~HpE~~~~~~~~~---~~g~~~~~~~~~~ 226 (227)
T TIGR01737 183 VGNIAGIVNER-------GNVLGMMPHPERASEKLLGG---DDGLKLFESLVEW 226 (227)
T ss_pred HHHHcccCCCC-------CCEEEEecCchhhcccccCC---cccHHHHHHHHhh
Confidence 588999887 78999999999984211100 0137899999853
No 68
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.81 E-value=1.8e-19 Score=166.91 Aligned_cols=183 Identities=13% Similarity=0.110 Sum_probs=111.6
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhH
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEEL 92 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~ 92 (421)
|||++-.... ..++++++++|+.++.+... ++ ++.+||||++||++ ..+.. +
T Consensus 1 igvl~~qg~~---------~e~~~~l~~~g~~v~~v~~~---~~----l~~~dgiii~Gg~~---~~~~~---------~ 52 (183)
T cd01749 1 IGVLALQGDF---------REHIRALERLGVEVIEVRTP---ED----LEGIDGLIIPGGES---TTIGK---------L 52 (183)
T ss_pred CEEEEecCCc---------HHHHHHHHHCCCeEEEECCH---HH----hccCCEEEECCchH---HHHHH---------H
Confidence 5677755432 24458899999998888642 22 45799999999963 11111 1
Q ss_pred HHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCC
Q 041791 93 EEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYD 172 (421)
Q Consensus 93 ~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~ 172 (421)
. ++......++.+.+.++|+||||.|+|+|+.++|+. ... ..+|- .+ ..+....+ ...
T Consensus 53 ~---------------~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~--~~~-~glG~-~~--~~v~~~~~-g~~ 110 (183)
T cd01749 53 L---------------RRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVEDQ--GGQ-PLLGL-LD--ITVRRNAF-GRQ 110 (183)
T ss_pred H---------------HhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhccc--CCC-CccCc-ee--EEEEeecc-ccc
Confidence 1 111124567888889999999999999999999874 110 11210 00 00100000 000
Q ss_pred CceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccc
Q 041791 173 GHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFH 252 (421)
Q Consensus 173 ~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFH 252 (421)
.++....+. ....+. ..+.+..+|.+.|..+|++++++|.+++ .+++++. .+++|+|||
T Consensus 111 ~g~~~~~l~-----~~~~~~------~~~~~~~~h~~~v~~~p~~~~~la~~~~-~~~a~~~---------~~~~g~qfH 169 (183)
T cd01749 111 VDSFEADLD-----IPGLGL------GPFPAVFIRAPVIEEVGPGVEVLAEYDG-KIVAVRQ---------GNVLATSFH 169 (183)
T ss_pred cceEEEcCC-----CCcCCC------CccEEEEEECcEEEEcCCCcEEEEecCC-EEEEEEE---------CCEEEEEcC
Confidence 112222211 111111 2567788899999899999999999855 4458875 359999999
Q ss_pred cCccCCCCCCCCCCchhhHHHHHHH
Q 041791 253 PERMRNQDSDNFDYPGCKSAYQEFV 277 (421)
Q Consensus 253 PE~~~~~~~~~~d~~~~~~lf~~Fv 277 (421)
||.+.. .++|+.|+
T Consensus 170 PE~~~~-----------~~~~~~f~ 183 (183)
T cd01749 170 PELTDD-----------TRIHEYFL 183 (183)
T ss_pred CccCCC-----------cchhhhhC
Confidence 998742 46777774
No 69
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.80 E-value=1.4e-19 Score=170.55 Aligned_cols=210 Identities=22% Similarity=0.311 Sum_probs=140.0
Q ss_pred CCCcEEEEEeccccC-----cc-cchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCcc
Q 041791 8 MILPRVLIVSRRTVR-----KN-KFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYD 81 (421)
Q Consensus 8 ~~~P~igI~~~~~~~-----~~-~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~ 81 (421)
+.+|+|||++++..- +| --..|++++|++.++..||+++++.++...+.+...|+.++|||++||.. .-..|
T Consensus 50 nykPvIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwa-k~~dY- 127 (340)
T KOG1559|consen 50 NYKPVIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWA-KRGDY- 127 (340)
T ss_pred ccCceeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCccc-ccccH-
Confidence 457999999987642 23 23579999999999999999999999988888888899999999999941 11111
Q ss_pred ccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHc-----CCCEEEEchhhHHHHHHhCCcccccchhhhccc
Q 041791 82 AELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLER-----NIPYLGICRGSQVLNVACGGTLYQDIEKEISKN 156 (421)
Q Consensus 82 ~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~-----~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~ 156 (421)
++-.+ .+...++++ ..||+|||+|+.+|.....-+ +++-..+..
T Consensus 128 -----------------------~~vvk-----kifnk~le~nDaGehFPvyg~CLGFE~lsmiISqn--rdile~~d~- 176 (340)
T KOG1559|consen 128 -----------------------FEVVK-----KIFNKVLERNDAGEHFPVYGICLGFELLSMIISQN--RDILERFDA- 176 (340)
T ss_pred -----------------------HHHHH-----HHHHHHHhccCCccccchhhhhhhHHHHHHHHhcC--hhHHHhhcc-
Confidence 11112 233344443 499999999999998865421 222111210
Q ss_pred cCCCceeeeccccCCCCceeEEEEcc----CCcchhhcccccccC-ceeEEEecccccccc--------ccCCCeEEEEE
Q 041791 157 CSLGQRVVHMNYENYDGHRHLVKVVE----DTPLHQWFRDSLEEN-KMEIMVNSYHHQGVK--------KLAQRFVPMAF 223 (421)
Q Consensus 157 ~~~~~~v~H~~~~~~~~~~h~V~i~~----~s~L~~~~~~~l~~~-~~~~~V~s~H~~~V~--------~L~~g~~vla~ 223 (421)
.. ....+.... .+.+|+.++..++.. ...+.|.++|.+++. .|..-|.++.+
T Consensus 177 ----vd-----------~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT 241 (340)
T KOG1559|consen 177 ----VD-----------VASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTT 241 (340)
T ss_pred ----cc-----------cccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheee
Confidence 00 011222222 245677776654432 335667889998873 35667888988
Q ss_pred eCCC----eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHH
Q 041791 224 ASDG----LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAY 273 (421)
Q Consensus 224 s~dg----~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf 273 (421)
+.|+ .|..++... .|+.|+|||||+.+...+. .|+|+.+...
T Consensus 242 ~~D~~~k~fvSTv~~~k-------YPvtgfQWHPEKnafEWgs-s~IpHsedAi 287 (340)
T KOG1559|consen 242 CTDGNSKTFVSTVESKK-------YPVTGFQWHPEKNAFEWGS-SDIPHSEDAI 287 (340)
T ss_pred ecCCCceEEEEeeccee-------ccceeeeecCccCcccccc-CCCCCChhHH
Confidence 8776 466666654 7999999999999887764 5677766544
No 70
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.80 E-value=4.1e-19 Score=178.90 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=120.9
Q ss_pred hhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 55 HMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 55 ~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
+..++.+..+|||++|||.+ ...- ...+..++||+++++|+|||||||
T Consensus 355 ~~aW~~l~~adGilvPGGFG-------~RGv-------------------------eG~i~Aak~ARen~iP~LGiCLGm 402 (585)
T KOG2387|consen 355 HAAWQKLKSADGILVPGGFG-------DRGV-------------------------EGKILAAKWARENKIPFLGICLGM 402 (585)
T ss_pred HHHHHHhccCCeEEeCCccc-------ccch-------------------------hHHHHHHHHHHhcCCCeEeeehhh
Confidence 34566788899999999953 2211 234678899999999999999999
Q ss_pred HHHHHHhCCcccc---cchhhhccccCCCc-------eeeeccccCCCCceeEEEEccCCcchhhcccccccCceeEEEe
Q 041791 135 QVLNVACGGTLYQ---DIEKEISKNCSLGQ-------RVVHMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVN 204 (421)
Q Consensus 135 QlLava~GG~v~~---~~~~e~g~~~~~~~-------~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~ 204 (421)
|+..+.|..++.. ..+.||....+... ...|++...+-+.+..+....+|.+.+.|++. ..+.-.
T Consensus 403 Q~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~-----~~V~ER 477 (585)
T KOG2387|consen 403 QLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNV-----EFVDER 477 (585)
T ss_pred hHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCc-----hhhhhh
Confidence 9999999887753 22446643221111 11122222233334444445567788888863 122334
Q ss_pred cccccccc-----c-cCCCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHH
Q 041791 205 SYHHQGVK-----K-LAQRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFV 277 (421)
Q Consensus 205 s~H~~~V~-----~-L~~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv 277 (421)
+.|+|.|+ . ...|+.+++.+.+| .+|.|+.++ |+||+|+|||||+.+.+... .++|-..+
T Consensus 478 HRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~------HP~fVg~QfHPE~~srp~kp-------sp~flGlv 544 (585)
T KOG2387|consen 478 HRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELES------HPFFVGVQFHPEFKSRPDKP-------SPLFLGLV 544 (585)
T ss_pred hhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCC------CCceeeeccCHHHhcCCCCC-------CcchhHhH
Confidence 55666653 1 34799999999888 799999998 79999999999999988763 56666666
Q ss_pred HHHHH
Q 041791 278 KAVIA 282 (421)
Q Consensus 278 ~a~~~ 282 (421)
.|...
T Consensus 545 ~as~~ 549 (585)
T KOG2387|consen 545 AASCG 549 (585)
T ss_pred HHHHh
Confidence 65443
No 71
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.79 E-value=9.4e-19 Score=162.49 Aligned_cols=184 Identities=16% Similarity=0.159 Sum_probs=110.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|||+.-.... ..++++++++|+.++++.. +++ ++.+||||||||++ +.++ .
T Consensus 1 ~igvl~~qg~~---------~e~~~~l~~~g~~~~~v~~---~~~----l~~~d~liipGG~~---~~~~---------~ 52 (184)
T TIGR03800 1 KIGVLALQGAV---------REHARALEALGVEGVEVKR---PEQ----LDEIDGLIIPGGES---TTLS---------R 52 (184)
T ss_pred CEEEEEccCCH---------HHHHHHHHHCCCEEEEECC---hHH----hccCCEEEECCCCH---HHHH---------H
Confidence 47777755331 2356899999999888853 222 35799999999952 1010 0
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
+.| +..-...++.+.+.++|+||||.|+|+|+.++...... .+|- . +..+..+... .
T Consensus 53 l~~---------------~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~----~lg~-~--~~~v~~~~~g-~ 109 (184)
T TIGR03800 53 LLD---------------KYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEG----YLGL-L--DMTVERNAYG-R 109 (184)
T ss_pred HHH---------------hccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCC----ccCc-E--EEEEEeeccC-C
Confidence 111 01113456777889999999999999999997432110 1110 0 0001110000 0
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcc
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQF 251 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQF 251 (421)
..+...+.+.. +..+. ..+.....|.+.|..+|++++++|++++ .++|++. .+++|+||
T Consensus 110 ~~~s~~~~l~~-----~~~~~------~~~~~~~~h~~~v~~lp~~~~vla~~~~-~~~a~~~---------~~~~gvQf 168 (184)
T TIGR03800 110 QVDSFEAEVDI-----KGVGD------DPITGVFIRAPKIVSVGNGVEILAKVGN-RIVAVRQ---------GNILVSSF 168 (184)
T ss_pred ccccEEEEeec-----ccCCC------CcceEEEEcCCCcccCCCCeEEEEEeCC-eeEEEEe---------CCEEEEEe
Confidence 00112222111 01111 1355667899999999999999999765 5678864 46999999
Q ss_pred ccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 252 HPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 252 HPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
|||++.. .++|+.|++
T Consensus 169 HPE~~~~-----------~~~~~~f~~ 184 (184)
T TIGR03800 169 HPELTDD-----------HRVHEYFLE 184 (184)
T ss_pred CCccCCC-----------chHHHHhhC
Confidence 9998742 478898874
No 72
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.77 E-value=6.5e-18 Score=179.37 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=123.8
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
+.|+|+.-..- ++ .+..++++..|+.+.+++. ++. ++.+|+||||||.+. +.
T Consensus 7 ~~i~iiDyG~G---N~-----~sl~~al~~~G~~v~~v~~---~~~----l~~~D~lIlpG~gs~-----~~-------- 58 (538)
T PLN02617 7 SEVTLLDYGAG---NV-----RSVRNAIRHLGFTIKDVQT---PED----ILNADRLIFPGVGAF-----GS-------- 58 (538)
T ss_pred CeEEEEECCCC---CH-----HHHHHHHHHCCCeEEEECC---hhh----hccCCEEEECCCCCH-----HH--------
Confidence 67777765421 11 2457788999998887752 222 357999999997642 11
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh---CCcccccchhhhcccc---C--CCce
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGTLYQDIEKEISKNC---S--LGQR 162 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~---GG~v~~~~~~e~g~~~---~--~~~~ 162 (421)
.+.++++ ......++.+++.++|+||||+|||+|+.++ |+. +.. +.+.... + ....
T Consensus 59 ~m~~L~~-------------~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~--~gl-g~l~G~v~~~~~~~~~~ 122 (538)
T PLN02617 59 AMDVLNN-------------RGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPV--EGL-GVIPGVVGRFDSSNGLR 122 (538)
T ss_pred HHHHHHH-------------cCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCc--cCc-ccccceEEECCccCCCC
Confidence 1222221 1123566777889999999999999999875 221 111 0010000 0 0012
Q ss_pred eeeccccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCC-eEEEEEeC--CCeEEEEEeCCCCC
Q 041791 163 VVHMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQR-FVPMAFAS--DGLIEGFYDPDAYN 239 (421)
Q Consensus 163 v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g-~~vla~s~--dg~ieaie~~~~~~ 239 (421)
++| .+|+.+.+.++++++..++. ..++.+|++.+..++.+ ..++++++ ++.+++|++
T Consensus 123 vp~-------iGw~~V~~~~~spL~~~l~~--------~~vy~vHSy~v~~~p~~~~~v~a~~~~g~~~IaAI~~----- 182 (538)
T PLN02617 123 VPH-------IGWNALQITKDSELLDGVGG--------RHVYFVHSYRATPSDENKDWVLATCNYGGEFIASVRK----- 182 (538)
T ss_pred CCe-------ecceEEEecCCChhHhcCCC--------cEEEEEeEEEEEecCCCCcEEEEEEccCCCcEEEEEe-----
Confidence 233 35999998888888876643 34666788877555544 34455554 458999986
Q ss_pred CCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 041791 240 PQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIA 282 (421)
Q Consensus 240 ~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~ 282 (421)
.+++|+|||||++... ...+|++|++.+..
T Consensus 183 ----gnI~GVQFHPE~s~~~---------G~~L~~nFl~~~~~ 212 (538)
T PLN02617 183 ----GNVHAVQFHPEKSGAT---------GLSILRRFLEPKSS 212 (538)
T ss_pred ----CCEEEEEcCCccCchh---------HHHHHHHHHHhhhh
Confidence 3699999999998632 26899999987663
No 73
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.76 E-value=2.9e-17 Score=156.48 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=125.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHH-HCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIV-SYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~-~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
+|+|+..+...+. ..-.++++ .+|+.+..++... . .++.+|+||||||.+. ++...
T Consensus 2 ~v~Vl~~~G~n~~-------~d~~~a~~~~~G~~~~~v~~~~--~----~l~~~D~lvipGG~~~-----~d~l~----- 58 (219)
T PRK03619 2 KVAVIVFPGSNCD-------RDMARALRDLLGAEPEYVWHKE--T----DLDGVDAVVLPGGFSY-----GDYLR----- 58 (219)
T ss_pred EEEEEecCCcChH-------HHHHHHHHhcCCCeEEEEecCc--C----CCCCCCEEEECCCCch-----hhhhc-----
Confidence 6888888865321 12256788 7999888775422 1 2457999999999642 11100
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH--hCCcccccchhhhccccCCCceeeeccc
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEISKNCSLGQRVVHMNY 168 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava--~GG~v~~~~~~e~g~~~~~~~~v~H~~~ 168 (421)
.. . ..+......+++.+.++++|++|||.|+|+|+.+ ++|++.+....++.
T Consensus 59 ---------~~--~--~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~-------------- 111 (219)
T PRK03619 59 ---------CG--A--IAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFI-------------- 111 (219)
T ss_pred ---------cc--h--hhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEE--------------
Confidence 00 0 0111224566777888999999999999999997 67776655433332
Q ss_pred cCCCCceeEEEEcc-CCcchhhcccccccCceeEEEecccccc--------cccc-CCCeEEEEEe---CCC---eEEEE
Q 041791 169 ENYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQG--------VKKL-AQRFVPMAFA---SDG---LIEGF 232 (421)
Q Consensus 169 ~~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~--------V~~L-~~g~~vla~s---~dg---~ieai 232 (421)
..|..+++.+ ++++++.++.. ..+.++..|+.+ ++.+ ..++.++..+ ++| .|+++
T Consensus 112 ----~~~v~v~i~~~~~~~~~~~~~g-----~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i 182 (219)
T PRK03619 112 ----CRDVHLRVENNDTPFTSGYEKG-----EVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGI 182 (219)
T ss_pred ----EEEEEEEECCCCChhhcCCCCC-----CEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhccc
Confidence 2377777765 57777777431 145565666655 2345 4556655444 677 36777
Q ss_pred EeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 233 YDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 233 e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
..++ ++++|+|||||+...+.... ....++|.+|++
T Consensus 183 ~~~~-------~~~~g~~~HPE~~~~~~~~~---~~g~~lf~~~v~ 218 (219)
T PRK03619 183 VNEK-------GNVLGMMPHPERAVEPLLGS---TDGLKLFESLLK 218 (219)
T ss_pred CCCC-------CCEEEEeCCCCccccCccCC---CcCHHHHHHHhh
Confidence 6654 79999999999997651100 014789999985
No 74
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.75 E-value=1.3e-17 Score=149.17 Aligned_cols=192 Identities=23% Similarity=0.400 Sum_probs=130.6
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
+|+|. +.++++...+..+|+ .-..|+...+...+. +.+++... +.++++|+.||. .|
T Consensus 19 ~piv~-IDNYDSFT~Nv~qYL-------~~e~g~~~~VyRNDeiTV~El~~~--NP~~LliSPGPG-~P----------- 76 (223)
T KOG0026|consen 19 GPIIV-IDNYDSFTYNLCQYL-------MGELGCHFEVYRNDELTVEELKRK--NPRGLLISPGPG-TP----------- 76 (223)
T ss_pred CCEEE-EecccchhHHHHHHh-------hhccCccEEEEecCcccHHHHhhc--CCCeEEecCCCC-CC-----------
Confidence 45554 456665555555544 245787666666543 45665543 689999999985 22
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccc
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNY 168 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~ 168 (421)
.|.-+ -.+.+.++ ...+|+||||.|.|.|..++||++.... | .+.|..
T Consensus 77 ------------~DsGI-------s~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~a~---~--------~i~HGK- 124 (223)
T KOG0026|consen 77 ------------QDSGI-------SLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVRSP---F--------GVMHGK- 124 (223)
T ss_pred ------------ccccc-------hHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEeccC---c--------ceeecc-
Confidence 11111 12333332 4689999999999999999999987552 2 234432
Q ss_pred cCCCCceeEEEEcc--CCcchhhcccccccCceeEEEeccccccc--cccC-CCeEEEEEeCCCeEEEEEeCCCCCCCCC
Q 041791 169 ENYDGHRHLVKVVE--DTPLHQWFRDSLEENKMEIMVNSYHHQGV--KKLA-QRFVPMAFASDGLIEGFYDPDAYNPQEG 243 (421)
Q Consensus 169 ~~~~~~~h~V~i~~--~s~L~~~~~~~l~~~~~~~~V~s~H~~~V--~~L~-~g~~vla~s~dg~ieaie~~~~~~~~~~ 243 (421)
...|.... ..-+++.+++ .+.|-.||+.+. .++| ..++++||.+||.|.+.+|+. |
T Consensus 125 ------~S~i~~D~~~~~G~f~g~~q-------~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkK-Y----- 185 (223)
T KOG0026|consen 125 ------SSMVHYDEKGEEGLFSGLSN-------PFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRK-Y----- 185 (223)
T ss_pred ------ccccccCCccccccccCCCC-------CeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccc-c-----
Confidence 22222221 1346777776 788999999876 4688 789999999999999999986 2
Q ss_pred CcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 041791 244 KFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIA 282 (421)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~ 282 (421)
..+-|||||||...+..+ ..+.++|++.+..
T Consensus 186 ~~ieGVQfHPESIlteeG--------k~~irNflni~~~ 216 (223)
T KOG0026|consen 186 KHIQGVQFHPESIITTEG--------KTIVRNFIKIVEK 216 (223)
T ss_pred ccccceeecchhhhhhhh--------HHHHHHHHHhccc
Confidence 458999999999987765 5688999986543
No 75
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.74 E-value=1.5e-17 Score=155.30 Aligned_cols=168 Identities=17% Similarity=0.232 Sum_probs=97.2
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
.++++++++.|+.++++. +.+++ +.+|+|||||+.... +.+.++++. .
T Consensus 13 ~s~~~al~~~g~~~~~v~---~~~~l----~~~D~lIlPG~g~~~-------------~~~~~L~~~------------g 60 (192)
T PRK13142 13 SNVKRAIEHLGYEVVVSN---TSKII----DQAETIILPGVGHFK-------------DAMSEIKRL------------N 60 (192)
T ss_pred HHHHHHHHHcCCCEEEEe---CHHHh----ccCCEEEECCCCCHH-------------HHHHHHHHC------------C
Confidence 356788999999988875 33343 469999999986421 113344321 0
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHHh-CCcccccchhhhcc---ccCCCceeeeccccCCCCceeEEEEccCCcch
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC-GGTLYQDIEKEISK---NCSLGQRVVHMNYENYDGHRHLVKVVEDTPLH 187 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava~-GG~v~~~~~~e~g~---~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~ 187 (421)
..+.++. ..++|+||||+|||+|+... .+.. ... +-+.. +.+....++|+ +|..+.. ..+++
T Consensus 61 -l~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~-~GL-gll~~~V~rf~~~~~vph~-------GWn~~~~--~~~l~ 126 (192)
T PRK13142 61 -LNAILAK--NTDKKMIGICLGMQLMYEHSDEGDA-SGL-GFIPGNISRIQTEYPVPHL-------GWNNLVS--KHPML 126 (192)
T ss_pred -cHHHHHH--hCCCeEEEECHHHHHHhhhcccCCc-Ccc-CceeEEEEECCCCCCCCcc-------cccccCC--CCccc
Confidence 1233444 46899999999999999876 1211 111 00100 01111233443 4776642 23333
Q ss_pred hhcccccccCceeEEEeccccccccccCCCeEEEEEeCCC--eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCC
Q 041791 188 QWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDG--LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFD 265 (421)
Q Consensus 188 ~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg--~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d 265 (421)
+ . ..++| |++.+. .++ .+++++..| .+.+++. .+++|+|||||++...|
T Consensus 127 ~---~------~~yFV---hSy~v~-~~~--~v~~~~~yg~~~~~~v~~---------~n~~g~QFHPEkS~~~G----- 177 (192)
T PRK13142 127 N---Q------DVYFV---HSYQAP-MSE--NVIAYAQYGADIPAIVQF---------NNYIGIQFHPEKSGTYG----- 177 (192)
T ss_pred c---c------EEEEE---CCCeEC-CCC--CEEEEEECCCeEEEEEEc---------CCEEEEecCcccCcHhH-----
Confidence 2 1 13444 555553 233 455665554 4555543 57999999999987655
Q ss_pred CchhhHHHHHHHH
Q 041791 266 YPGCKSAYQEFVK 278 (421)
Q Consensus 266 ~~~~~~lf~~Fv~ 278 (421)
.+++++|++
T Consensus 178 ----~~ll~nf~~ 186 (192)
T PRK13142 178 ----LQILRQAIQ 186 (192)
T ss_pred ----HHHHHHHHh
Confidence 689999976
No 76
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.69 E-value=9.7e-16 Score=148.09 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=59.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
.+|||++..+.. ..++++|+++|+.++++.. ++. +..+||||||||.+ ..+
T Consensus 2 m~igVLa~qG~~---------~e~~~aL~~lG~ev~~v~~---~~~----L~~~DgLILPGGfs---~~~---------- 52 (248)
T PLN02832 2 MAIGVLALQGSF---------NEHIAALRRLGVEAVEVRK---PEQ----LEGVSGLIIPGGES---TTM---------- 52 (248)
T ss_pred cEEEEEeCCCch---------HHHHHHHHHCCCcEEEeCC---HHH----hccCCEEEeCCCHH---HHH----------
Confidence 479999977542 2346889999999888763 333 35799999999852 001
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
..+.+ ...-...++.+.+.++|+||||+|||+|+...
T Consensus 53 --~~L~~------------~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 53 --AKLAE------------RHNLFPALREFVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred --HHHHh------------hcchHHHHHHHHHcCCCEEEEChhHHHHHHHh
Confidence 11110 00123445666678999999999999999875
No 77
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.66 E-value=3.5e-16 Score=144.29 Aligned_cols=164 Identities=21% Similarity=0.246 Sum_probs=109.9
Q ss_pred HHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHH
Q 041791 35 LDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIEL 114 (421)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el 114 (421)
+..+..-|-.--......+.=.-.+.|+++||++|+|+.. | .++ +.+||.+| .
T Consensus 31 vsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~-d--Af~---------d~dWI~KL---------------c 83 (245)
T KOG3179|consen 31 VSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKH-D--AFS---------DADWIKKL---------------C 83 (245)
T ss_pred HHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcc-c--ccc---------cchHHHHH---------------H
Confidence 4555556655443332222111123467899999999862 1 122 34688654 3
Q ss_pred HHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchh-hhccccCCCceeeeccccCCCCceeEEEEcc-CCcchhhccc
Q 041791 115 RLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEK-EISKNCSLGQRVVHMNYENYDGHRHLVKVVE-DTPLHQWFRD 192 (421)
Q Consensus 115 ~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~-e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~-~s~L~~~~~~ 192 (421)
.+++.....++||+|||.|||+++.+.||++.+...+ +++ .+...-|.... +..+|.-.+.
T Consensus 84 s~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~-----------------lg~itivk~~~~~~~yFG~~~~ 146 (245)
T KOG3179|consen 84 SFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLG-----------------LGSITIVKDAEKPEKYFGEIPK 146 (245)
T ss_pred HHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCCCccc-----------------ccceEEEEecccchhhcccchh
Confidence 5667777788999999999999999999999887532 111 00111122111 1223322223
Q ss_pred ccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 193 SLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 193 ~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
.+.++..|++.|-.+|++++++|.++++.+|+++.++ .++++|-|||+..
T Consensus 147 -------~l~IikcHqDevle~PE~a~llasSe~ceve~fs~~~--------~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 147 -------SLNIIKCHQDEVLELPEGAELLASSEKCEVEMFSIED--------HLLCFQGHPEYNK 196 (245)
T ss_pred -------hhhHHhhcccceecCCchhhhhccccccceEEEEecc--------eEEEecCCchhhH
Confidence 5677889999999999999999999999999999985 7999999999975
No 78
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.4e-15 Score=150.61 Aligned_cols=191 Identities=23% Similarity=0.363 Sum_probs=117.0
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHH-CCCeEE-EEcCCCChhhhhhhcCC---cCEEEECCCCCCCCCCccccccC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVS-YGAVPV-IVPRVTGVHMLLESFEP---IHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~-~Ga~~v-ivp~~~~~~~l~~~l~~---~DGVIL~GG~didp~~y~~~~~~ 86 (421)
+++.+.++++..-+.++. |.. .|.-+| ++.+....++..+.+.+ +|+||+..||+ +| ...++
T Consensus 16 ~~LlID~YDSyTfNiy~l--------l~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG-~P-~~a~d--- 82 (767)
T KOG1224|consen 16 RTLLIDNYDSYTFNIYQL--------LSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPG-SP-MCAAD--- 82 (767)
T ss_pred eEEEEecccchhhhHHHH--------HHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCC-CC-CcHHH---
Confidence 456666666554444433 333 344334 44544433333444444 99999999985 33 11111
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
+ .+-.++...| +.+||||||+|||.|+.+.|+.+..... +.|.
T Consensus 83 -----~------------------gI~~rl~~~~--~~iPilGICLGfQal~l~hGA~v~~~n~------------p~HG 125 (767)
T KOG1224|consen 83 -----I------------------GICLRLLLEC--RDIPILGICLGFQALGLVHGAHVVHANE------------PVHG 125 (767)
T ss_pred -----H------------------HHHHHHHHhc--CCCceeeeehhhHhHhhhcccceecCCC------------cccc
Confidence 0 1122333332 4699999999999999999998863221 1121
Q ss_pred cccCCCCceeEEEEccCCc----chhhcccccccCceeEEEeccccccccccCCCeEE-EEEeC-C-C-eEEEEEeCCCC
Q 041791 167 NYENYDGHRHLVKVVEDTP----LHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVP-MAFAS-D-G-LIEGFYDPDAY 238 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~s~----L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~v-la~s~-d-g-~ieaie~~~~~ 238 (421)
....+... +.. ++..+++ .+.+-.||+..++.+|-+... +++.. | | ++.++.+..
T Consensus 126 -------rvs~i~~~-~~~~f~gi~sg~~~-------~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~-- 188 (767)
T KOG1224|consen 126 -------RVSGIEHD-GNILFSGIPSGRNS-------DFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSS-- 188 (767)
T ss_pred -------eeeeEEec-CcEEEccCCCCCcc-------cceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccC--
Confidence 12233322 222 3333333 577888999999888876544 44442 3 4 688898886
Q ss_pred CCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 041791 239 NPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIA 282 (421)
Q Consensus 239 ~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~ 282 (421)
.|.||+|||||...+..+ .++|.+|++.+..
T Consensus 189 -----fPhfG~qyHPES~~s~~g--------~~lfkNFl~lt~~ 219 (767)
T KOG1224|consen 189 -----FPHFGLQYHPESIASTYG--------SQLFKNFLDLTVN 219 (767)
T ss_pred -----CCccceeeChHHhhhhhh--------HHHHHHHHHhhcc
Confidence 788999999999887664 6899999986654
No 79
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.59 E-value=5.2e-14 Score=137.48 Aligned_cols=225 Identities=18% Similarity=0.220 Sum_probs=128.7
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCC-CCCCccccccC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDI-DPSLYDAELSG 86 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~di-dp~~y~~~~~~ 86 (421)
|.+++|+|+.-+...+.. ...++++.+|+.+.+++..... .....++.+||||||||.+. |...++..
T Consensus 1 ~~~~kvaVl~~pG~n~d~-------e~~~Al~~aG~~v~~v~~~~~~-~~~~~l~~~DgLvipGGfs~gD~l~~g~~--- 69 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED-------ETVKAFRRLGVEPEYVHINDLA-AERKSVSDYDCLVIPGGFSAGDYIRAGAI--- 69 (261)
T ss_pred CCCCEEEEEeCCCCCCHH-------HHHHHHHHCCCcEEEEeecccc-ccccchhhCCEEEECCCCCcccccccchh---
Confidence 456899999988764332 2357889999999888753211 11223568999999999532 21111110
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
|..+ .+ ......++.+.++++|+||||+|+|+|+.+ | +..... .... +......++
T Consensus 70 -------~~~~----------l~-~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~-G--lLpg~~-~~~~--~~~~~L~~N 125 (261)
T PRK01175 70 -------FAAR----------LK-AVLRKDIEEFIDEGYPIIGICNGFQVLVEL-G--LLPGFD-EIAE--KPEMALTVN 125 (261)
T ss_pred -------hHHH----------HH-HHHHHHHHHHHHCCCeEEEECHHHHHHHHC-C--CCCCCC-cccc--CCcceEeec
Confidence 0000 00 111256788889999999999999999984 2 111100 0000 011123344
Q ss_pred cccCCCCceeEEEEcc-CCcchhhcccccccCceeEEEecccccc--c-------cccC-CCeEEEEE------------
Q 041791 167 NYENYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQG--V-------KKLA-QRFVPMAF------------ 223 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~--V-------~~L~-~g~~vla~------------ 223 (421)
....+...|-.+++.. .|++.+.+... .+.+...|+++ + +.|- .+..++-+
T Consensus 126 ~s~~f~~~~~~~~v~~~~s~~~~~~~~~------~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~ 199 (261)
T PRK01175 126 ESNRFECRPTYLKKENRKCIFTKLLKKD------VFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPW 199 (261)
T ss_pred CCCCeEEeeeEEEECCCCChhHhccCCC------EEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCC
Confidence 4444445577787765 56666555432 45555566554 1 1222 23333322
Q ss_pred eCCC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCC-----CCCCchhhHHHHHHHHHH
Q 041791 224 ASDG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSD-----NFDYPGCKSAYQEFVKAV 280 (421)
Q Consensus 224 s~dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~-----~~d~~~~~~lf~~Fv~a~ 280 (421)
+++| -|+||..++ ++++|...||||...+..- +.--..-..+|+++++..
T Consensus 200 NPNGs~~~IAGi~~~~-------G~vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 200 NPNGSIYNIAGITNEK-------GNVIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred CCCCChhhcceeECCC-------CCEEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHH
Confidence 3444 489999887 7899999999998753310 000001468899987644
No 80
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.55 E-value=3.7e-14 Score=140.74 Aligned_cols=111 Identities=21% Similarity=0.130 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccch-hhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhccc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE-KEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRD 192 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~-~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~ 192 (421)
..+++++.+..+|+||||.|+|+++.++||....... ..+| + ..|.+. .+.+++++.+++
T Consensus 125 ~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~G--------v----------~~~~~~-~~~~pL~~g~~d 185 (302)
T PRK05368 125 KEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSG--------V----------FEHRVL-DPHHPLLRGFDD 185 (302)
T ss_pred HHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeE--------E----------EEEEEc-CCCChhhcCCCC
Confidence 3567778888999999999999999999995221111 1232 0 123222 235677777765
Q ss_pred ccccCceeEEEecccccccc----ccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 193 SLEENKMEIMVNSYHHQGVK----KLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 193 ~l~~~~~~~~V~s~H~~~V~----~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
.|.+...|...|. .++++++++|.|+.+-+.++..++ ..++++|+|||++.
T Consensus 186 -------~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~-------~r~~~vQgHPEYd~ 240 (302)
T PRK05368 186 -------SFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKD-------KREVFVTGHPEYDA 240 (302)
T ss_pred -------ccccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCC-------CCEEEEECCCCCCH
Confidence 6777778877773 378999999999988899998865 57999999999985
No 81
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.50 E-value=6.7e-13 Score=122.46 Aligned_cols=175 Identities=16% Similarity=0.154 Sum_probs=100.6
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
.+|||++-.... .+ |.+++++.|+.++++. ++++ ++.+|+||||||+.- .
T Consensus 3 ~~igVLalqG~~--------~E-h~~al~~lG~~v~~v~---~~~~----l~~~D~LILPGG~~t------~-------- 52 (179)
T PRK13526 3 QKVGVLAIQGGY--------QK-HADMFKSLGVEVKLVK---FNND----FDSIDRLVIPGGEST------T-------- 52 (179)
T ss_pred cEEEEEECCccH--------HH-HHHHHHHcCCcEEEEC---CHHH----HhCCCEEEECCChHH------H--------
Confidence 679999977552 22 7889999999877765 3444 347999999998520 0
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
+ ....++......++...+ ++|+||||.|+|+|+....+ +|- . ...+..+.+..
T Consensus 53 ----~---------~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~---------Lg~-i--dg~V~Rn~~Gr 106 (179)
T PRK13526 53 ----L---------LNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGY---------LNL-L--DLEVQRNAYGR 106 (179)
T ss_pred ----H---------HHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCC---------CCC-c--cEEEEEcCCCC
Confidence 0 000111112355566554 68999999999999984211 110 0 00111111100
Q ss_pred CCCce-eEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 171 YDGHR-HLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 171 ~~~~~-h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
....| ..+.+ ++. .+.........|.+.+++.+++|+-+ +.+-+++. ++++++
T Consensus 107 q~~sf~~~~~~-~~~---------------~~~~vFiRAP~i~~~~~~v~vla~~~-~~~v~v~q---------~~~l~~ 160 (179)
T PRK13526 107 QVDSFVADISF-NDK---------------NITGVFIRAPKFIVVGNQVDILSKYQ-NSPVLLRQ---------ANILVS 160 (179)
T ss_pred ccceeeeecCc-CCc---------------eEEEEEEcCceEeEcCCCcEEEEEEC-CEEEEEEE---------CCEEEE
Confidence 00000 00111 000 12222333344567789999999875 46666665 579999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
-||||-+. + .++.+.|++
T Consensus 161 ~FHPElt~--d---------~r~h~~f~~ 178 (179)
T PRK13526 161 SFHPELTQ--D---------PTVHEYFLA 178 (179)
T ss_pred EeCCccCC--C---------chHHHHHhc
Confidence 99999874 2 577788874
No 82
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.49 E-value=7e-13 Score=127.89 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=104.8
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
.++++++++|+.+++++....... ...++.+||||||||.. |++... . +.+...+..
T Consensus 14 ~~~~al~~aG~~v~~v~~~~~~~~-~~~l~~~d~liipGG~~-----~~d~l~--------------~--~~~~~~~~~- 70 (238)
T cd01740 14 DMAYAFELAGFEAEDVWHNDLLAG-RKDLDDYDGVVLPGGFS-----YGDYLR--------------A--GAIAAASPL- 70 (238)
T ss_pred HHHHHHHHcCCCEEEEeccCCccc-cCCHhhCCEEEECCCCC-----cccccc--------------c--ccccccChh-
Confidence 467889999999998886432111 12356799999999963 222210 0 000011111
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH--hCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEcc-CCcchhh
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVE-DTPLHQW 189 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava--~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~-~s~L~~~ 189 (421)
...+++.+.+.++|+||||.|+|+|+.+ +++++......++.- . ..+.|..+.+.. ++.+...
T Consensus 71 ~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~--------~------~~~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 71 LMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFIC--------R------WQNRFVTLRVENNDSPFTKG 136 (238)
T ss_pred HHHHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceec--------c------ccCceEEEEEcCCCCceecC
Confidence 5677888889999999999999999997 677664433222210 0 001134555543 3444443
Q ss_pred cccccccCceeEEEeccccccc--------cccCCCeEEEEE-------------eCCC---eEEEEEeCCCCCCCCCCc
Q 041791 190 FRDSLEENKMEIMVNSYHHQGV--------KKLAQRFVPMAF-------------ASDG---LIEGFYDPDAYNPQEGKF 245 (421)
Q Consensus 190 ~~~~l~~~~~~~~V~s~H~~~V--------~~L~~g~~vla~-------------s~dg---~ieaie~~~~~~~~~~~~ 245 (421)
+... ..+.++..|+++= ..|-..-.++-+ +++| .|+||..++ ++
T Consensus 137 ~~~g-----~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~-------Gr 204 (238)
T cd01740 137 YMEG-----EVLRIPVAHGEGRFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNED-------GR 204 (238)
T ss_pred CCCC-----CEEEEEeECCceeeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCC-------CC
Confidence 2110 1567777787641 111111111111 3445 389999987 78
Q ss_pred EEEEccccCccCCC
Q 041791 246 IMGLQFHPERMRNQ 259 (421)
Q Consensus 246 i~GvQFHPE~~~~~ 259 (421)
++|...||||...+
T Consensus 205 vlglMphPer~~~~ 218 (238)
T cd01740 205 VLGMMPHPERAVEP 218 (238)
T ss_pred EEEEcCChHHcccc
Confidence 99999999998765
No 83
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.45 E-value=3.8e-12 Score=120.18 Aligned_cols=201 Identities=21% Similarity=0.253 Sum_probs=120.6
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcC-CcCEEEECCCCCCCCCCccccccCCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFE-PIHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
+|+|+|+.-+.+.++- +. ..+++.+|+.++.|..... .+. ++|+|++|||.+ |++....
T Consensus 2 ~~kvaVi~fpGtN~d~--d~-----~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFS-----yGDyLr~-- 61 (231)
T COG0047 2 RPKVAVLRFPGTNCDY--DM-----AAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFS-----YGDYLRA-- 61 (231)
T ss_pred CceEEEEEcCCcCchH--HH-----HHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCC-----cccccCc--
Confidence 6999999988764332 22 2457789999998875432 122 599999999964 5553320
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH--hCCcccccchhhhccccCCCceeeec
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava--~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
-||.++ .+ .+.-++.+.+.++|+||||.|+|+|..+ +-|.+.++.+..|
T Consensus 62 ----Gaiaa~-------~~-----v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F------------- 112 (231)
T COG0047 62 ----GAIAAI-------AP-----VMDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRF------------- 112 (231)
T ss_pred ----chHHhh-------HH-----HHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCce-------------
Confidence 133321 12 2344566667999999999999999954 2334333322111
Q ss_pred cccCCCCceeEEEEcc-CCcchhhcccccccCceeEEEecccccc---c-----cccCCCeEEEEE------------eC
Q 041791 167 NYENYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQG---V-----KKLAQRFVPMAF------------AS 225 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~---V-----~~L~~g~~vla~------------s~ 225 (421)
...|..+++.. +|++.+.|... ..+.+.-.|+.+ + ..|-.+-.++.+ ++
T Consensus 113 -----~cr~v~l~V~~~~t~ft~~~~~g-----~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NP 182 (231)
T COG0047 113 -----ECRWVYLRVENNNTPFTSGYEGG-----EVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANP 182 (231)
T ss_pred -----EEEEEEEEEecCCCHHHHhcCCC-----ceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCC
Confidence 12356666654 46666666441 245556667654 1 123333334433 33
Q ss_pred CC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 226 DG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 226 dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
+| -|++|..++ .+++|..-||||.....-..-| -.++|++.++.
T Consensus 183 NGS~~~IaGI~n~~-------G~V~gmMPHPERa~~~~~g~~D---g~~lF~s~~~~ 229 (231)
T COG0047 183 NGSVNGIAGITNED-------GNVLGMMPHPERASESLLGGED---GLRLFRSARKY 229 (231)
T ss_pred CCChhhceeEEcCC-------CCEEEecCCchhhhhcccCCch---HHHHHHHHHHh
Confidence 45 388888886 8999999999998752211101 45677766654
No 84
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.39 E-value=4.6e-12 Score=116.87 Aligned_cols=166 Identities=19% Similarity=0.229 Sum_probs=94.4
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
.|++.|+++|+.++.|.. .++ |+.+||||||||++ ..|.++ .+...
T Consensus 10 EH~~~l~~lg~~~~~Vr~---~~d----L~~~dgLIiPGGES------------------Tti~~l---------l~~~g 55 (188)
T PF01174_consen 10 EHIRMLERLGAEVVEVRT---PED----LEGLDGLIIPGGES------------------TTIGKL---------LRRYG 55 (188)
T ss_dssp HHHHHHHHTTSEEEEE-S---GGG----GTT-SEEEE-SS-H------------------HHHHHH---------HHHTT
T ss_pred HHHHHHHHcCCCeEEeCC---HHH----HccCCEEEECCCcH------------------HHHHHH---------HHHcC
Confidence 588999999999988863 333 34799999999962 011111 11222
Q ss_pred HHHHHHHHHHcC-CCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcc
Q 041791 113 ELRLAKLCLERN-IPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFR 191 (421)
Q Consensus 113 el~li~~ale~~-iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~ 191 (421)
-+..++.+...+ +|+||+|-||-+|+....+. .+. .+ +.-++.+..+- ||
T Consensus 56 L~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~-~q~---~L--------------------g~ldi~V~RNa-----fG 106 (188)
T PF01174_consen 56 LFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQ-GQP---LL--------------------GLLDITVRRNA-----FG 106 (188)
T ss_dssp HHHHHHHHHHTT--EEEEETHHHHHHEEEECSS-CCT---SS----------------------EEEEEETTT-----TC
T ss_pred CHHHHHHHHHcCCCceeehhHHHHHhhhhhhhc-ccc---cc--------------------cceeEEEEccc-----cc
Confidence 345567777776 99999999999998654332 110 11 13344443331 11
Q ss_pred ccccc--------C-ceeEEEeccccccccccC--CCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCC
Q 041791 192 DSLEE--------N-KMEIMVNSYHHQGVKKLA--QRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQD 260 (421)
Q Consensus 192 ~~l~~--------~-~~~~~V~s~H~~~V~~L~--~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (421)
+.+.. . ...+..-......|.++. ++.++++..+ |.+-+++. ++++++-||||-+..
T Consensus 107 rQ~~SFe~~l~i~~~~~~~~avFIRAP~I~~v~~~~~v~vla~~~-g~iVav~q---------gn~latsFHPELT~D-- 174 (188)
T PF01174_consen 107 RQLDSFEADLDIPGLGEPFPAVFIRAPVIEEVGSPEGVEVLAELD-GKIVAVRQ---------GNILATSFHPELTDD-- 174 (188)
T ss_dssp SSSCEEEEEEEETTTESEEEEEESS--EEEEE--TTTEEEEEEET-TEEEEEEE---------TTEEEESS-GGGSST--
T ss_pred cchhcEEEEEEeecCCCcEEEEEcCCcEEEEeecccccccccccc-cceEEEEe---------cCEEEEEeCCcccCc--
Confidence 11000 0 013444444444555555 7788888776 45556664 579999999998752
Q ss_pred CCCCCCchhhHHHHHHHHHHH
Q 041791 261 SDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 261 ~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
..++.+.|++.+.
T Consensus 175 --------~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 175 --------DTRIHEYFLEMVV 187 (188)
T ss_dssp --------HCHHHHHHHHHHC
T ss_pred --------hhHHHHHHHHHhh
Confidence 1478899998764
No 85
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=1.2e-11 Score=113.34 Aligned_cols=184 Identities=19% Similarity=0.201 Sum_probs=106.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCC-CeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYG-AVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
.+|||+.-.... +.|+++++++| +.++.+.. +++ |+.+||||||||++
T Consensus 1 m~IGVLalQG~v---------~EH~~~l~~~~~~e~~~Vk~---~~d----L~~~d~LIiPGGES--------------- 49 (194)
T COG0311 1 MKIGVLALQGAV---------EEHLEALEKAGGAEVVEVKR---PED----LEGVDGLIIPGGES--------------- 49 (194)
T ss_pred CeEEEEEecccH---------HHHHHHHHhhcCCceEEEcC---HHH----hccCcEEEecCccH---------------
Confidence 368888855431 35889999995 88887763 333 45799999999963
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
..|.++ .++..-++.++...+.++|+||+|-||-+|+...-+...+. .+|
T Consensus 50 ---TTi~rL---------~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei~~~~~~~---~Lg--------------- 99 (194)
T COG0311 50 ---TTIGRL---------LKRYGLLEPLREFIADGLPVFGTCAGLILLAKEILDGPEQP---LLG--------------- 99 (194)
T ss_pred ---HHHHHH---------HHHcCcHHHHHHHHHcCCceEEechhhhhhhhhhcCCCCCc---ccc---------------
Confidence 112222 22223345667777889999999999999997543200000 111
Q ss_pred CCCCceeEEEEccCC--cchhhcccccc--c--CceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCC
Q 041791 170 NYDGHRHLVKVVEDT--PLHQWFRDSLE--E--NKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEG 243 (421)
Q Consensus 170 ~~~~~~h~V~i~~~s--~L~~~~~~~l~--~--~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~ 243 (421)
.-.+.+..+. +-.+.|...+. . ....+..-......+.+..++.+++|+-++ .+-+++.
T Consensus 100 -----~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFIRAP~I~~vg~~V~vLa~l~~-~iVav~q--------- 164 (194)
T COG0311 100 -----LLDVTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFIRAPVIEEVGDGVEVLATLDG-RIVAVKQ--------- 164 (194)
T ss_pred -----eEEEEEEccccccccccceeeEEeecccCCCcceEEEEEcceeehhcCcceEeeeeCC-EEEEEEe---------
Confidence 2333333221 01111111000 0 000111122233345566678999998765 5555553
Q ss_pred CcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 244 KFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
++++++-||||.+.. .++.+.|++.+.
T Consensus 165 gn~LatsFHPELT~D-----------~r~Heyf~~~v~ 191 (194)
T COG0311 165 GNILATSFHPELTDD-----------TRLHEYFLDMVL 191 (194)
T ss_pred CCEEEEecCccccCC-----------ccHHHHHHHHhh
Confidence 579999999998752 467777777654
No 86
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.30 E-value=3.8e-11 Score=117.23 Aligned_cols=225 Identities=20% Similarity=0.176 Sum_probs=108.6
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
||+|+|+.-+.+.+.. .-+.+++.+|+.+.+|.... .-.-...++.+|+|+||||.+ |++...+ .
T Consensus 1 kpkV~Vl~~pGtNce~-------e~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~~~lvipGGFS-----~gD~l~s--g 65 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCER-------ETAAAFENAGFEPEIVHIND-LLSGESDLDDFDGLVIPGGFS-----YGDYLRS--G 65 (259)
T ss_dssp --EEEEEE-TTEEEHH-------HHHHHHHCTT-EEEEEECCH-HHTTS--GCC-SEEEE-EE-G-----GGGTTST--T
T ss_pred CCEEEEEECCCCCCHH-------HHHHHHHHcCCCceEEEEEe-cccccCchhhCcEEEECCccC-----ccccchH--H
Confidence 6899999988764332 22457899999999887532 111123567899999999963 5553310 0
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHc-CCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLER-NIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNY 168 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~-~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~ 168 (421)
--|..++.-. .+ -...++.++++ +.|+||||.|+|+|... | +......... .......++..
T Consensus 66 --~~~a~~~~~~----~~-----~~~~i~~f~~~~g~~vLGIcNGfQiL~~~-G--llp~~~~~~~---~~~~~L~~N~s 128 (259)
T PF13507_consen 66 --AIAAARLLFN----SP-----LMDAIREFLERPGGFVLGICNGFQILVEL-G--LLPGGEIKDS---EQSPALTPNAS 128 (259)
T ss_dssp --HHHHHHHCCS----CC-----CHHHHHHHHHCTT-EEEEECHHHHHHCCC-C--CSTT---------TT--EEE--TT
T ss_pred --HHHHHHhhcc----HH-----HHHHHHHHHhcCCCeEEEEchHhHHHHHh-C--cCCCcccccc---CCCcEEcCCCC
Confidence 0111111000 01 13445666677 99999999999999764 2 1111000000 01123334444
Q ss_pred cCCCCceeEEEEccCCcchhhcccccccCceeEEEecccccc---c------cccCCCeEEEEE-e-------------C
Q 041791 169 ENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQG---V------KKLAQRFVPMAF-A-------------S 225 (421)
Q Consensus 169 ~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~---V------~~L~~g~~vla~-s-------------~ 225 (421)
..+...|..+.+.+.|+....-+- ..+.+...|+++ + +.|-..-.|+++ . +
T Consensus 129 ~~fe~rwv~~~v~~~s~~~~~~~~------~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NP 202 (259)
T PF13507_consen 129 GRFESRWVNLVVNENSPSIFLRGL------EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNP 202 (259)
T ss_dssp SS-EEEEEEEEE--SSTTCCCTTT------TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSS
T ss_pred CCeEEEEEEEEEecCCcceecCCC------CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCC
Confidence 444555777765444443211111 023334445443 1 123333333333 2 2
Q ss_pred CC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCC-CCC-----chhhHHHHHHHHH
Q 041791 226 DG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDN-FDY-----PGCKSAYQEFVKA 279 (421)
Q Consensus 226 dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~-~d~-----~~~~~lf~~Fv~a 279 (421)
+| -|+||..++ ++++|...|||+...+..-+ ..- ....++|++-++.
T Consensus 203 NGS~~~IAGics~~-------GrvlglMpHPEr~~~~~~~~~~p~~~~~~s~~~~~F~n~~~w 258 (259)
T PF13507_consen 203 NGSVNNIAGICSPD-------GRVLGLMPHPERAFEPWQWPHWPREKWQESPWLRIFQNAVEW 258 (259)
T ss_dssp S--GGGEEEEE-TT-------SSEEEESSBCCGTTCCCCSS-S--TT--B-TTHHHHHHHHH-
T ss_pred CCCccceeEEEcCC-------CCEEEEcCChHHhCchhhcCCCCccccCCChHHHHHHHHhhc
Confidence 23 499999998 78999999999987644322 110 1245666665543
No 87
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.28 E-value=1.8e-11 Score=120.89 Aligned_cols=177 Identities=19% Similarity=0.256 Sum_probs=108.7
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
.-.+|+.+|..+-.|. ++.++. +.|-+|+||-.++.|.+ + ...|..++
T Consensus 17 i~nal~hlg~~i~~v~---~P~DI~----~a~rLIfPGVGnfg~~~---D----------------------~L~~~Gf~ 64 (541)
T KOG0623|consen 17 IRNALRHLGFSIKDVQ---TPGDIL----NADRLIFPGVGNFGPAM---D----------------------VLNRTGFA 64 (541)
T ss_pred HHHHHHhcCceeeecc---Cchhhc----cCceEeecCcccchHHH---H----------------------HHhhhhhH
Confidence 4567889998776664 333443 68999999965543321 0 01233344
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccC--------CCceeeeccccCCCCceeEEEEccCCc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCS--------LGQRVVHMNYENYDGHRHLVKVVEDTP 185 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~--------~~~~v~H~~~~~~~~~~h~V~i~~~s~ 185 (421)
..+ +..+++++|++|||.|.|.|.. |++....+..+| .++ ....++|+ +|+.+.+-.++.
T Consensus 65 epl-r~YiesgkPfmgicvGlQaLF~---gSvE~p~skGLg-vipg~v~RFD~s~k~VPhI-------GWNsc~v~sd~e 132 (541)
T KOG0623|consen 65 EPL-RKYIESGKPFMGICVGLQALFD---GSVENPPSKGLG-VIPGIVGRFDASAKIVPHI-------GWNSCQVGSDSE 132 (541)
T ss_pred HHH-HHHHhcCCCeEeehhhHHHHhc---ccccCCCcCccc-ccccceecccCCCCcCCcc-------cccccccCCccc
Confidence 444 5556799999999999999864 333321111111 011 11234555 599998877777
Q ss_pred chhhcccccccCceeEEEecccccccc-cc-CCCeEEEEEeCCC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCC
Q 041791 186 LHQWFRDSLEENKMEIMVNSYHHQGVK-KL-AQRFVPMAFASDG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQD 260 (421)
Q Consensus 186 L~~~~~~~l~~~~~~~~V~s~H~~~V~-~L-~~g~~vla~s~dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (421)
++...+. ++.++|++|-.-... .+ +++|++ |+...| .|.+|.. .+++++|||||++...+
T Consensus 133 ffg~~p~-----~~~YFVHSyl~~ek~~~len~~wki-at~kYG~E~Fi~ai~k---------nN~~AtQFHPEKSG~aG 197 (541)
T KOG0623|consen 133 FFGDVPN-----RHVYFVHSYLNREKPKSLENKDWKI-ATCKYGSESFISAIRK---------NNVHATQFHPEKSGEAG 197 (541)
T ss_pred ccccCCC-----ceEEEEeeecccccccCCCCCCceE-eeeccCcHHHHHHHhc---------CceeeEecccccccchh
Confidence 7665554 245666665322221 34 356774 666665 5788875 46999999999998766
Q ss_pred CCCCCCchhhHHHHHHHH
Q 041791 261 SDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 261 ~~~~d~~~~~~lf~~Fv~ 278 (421)
...+++|+.
T Consensus 198 ---------L~vl~~FL~ 206 (541)
T KOG0623|consen 198 ---------LSVLRRFLH 206 (541)
T ss_pred ---------HHHHHHHHh
Confidence 567788875
No 88
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.11 E-value=1.8e-09 Score=123.69 Aligned_cols=225 Identities=20% Similarity=0.191 Sum_probs=127.3
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC--------ChhhhhhhcCCcCEEEECCCCCCCCCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT--------GVHMLLESFEPIHGVLLCEGEDIDPSL 79 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--------~~~~l~~~l~~~DGVIL~GG~didp~~ 79 (421)
..+|+|+|+.-+.+.+.. + -..+++.+|+.+.++.... +.+.+...++.+++|++|||.+
T Consensus 975 ~~kpkvaIl~~pGtNce~--d-----~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFS----- 1042 (1239)
T TIGR01857 975 VEKPRVVIPVFPGTNSEY--D-----SAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFS----- 1042 (1239)
T ss_pred CCCCeEEEEECCCCCCHH--H-----HHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccC-----
Confidence 457999999998875443 1 1346788999887776322 1222324467899999999964
Q ss_pred ccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhC----Ccccccchhhhcc
Q 041791 80 YDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACG----GTLYQDIEKEISK 155 (421)
Q Consensus 80 y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~G----G~v~~~~~~e~g~ 155 (421)
|++...+ -=.|+..+ .+...-...++.+++++.|+||||.|+|+|... | +.+....
T Consensus 1043 yGD~l~~----~~~~~aa~---------~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l-GLlP~~~~~~~~------ 1102 (1239)
T TIGR01857 1043 AGDEPDG----SAKFIAAI---------LRNPKVRVAIDSFLARDGLILGICNGFQALVKS-GLLPYGNIEAAN------ 1102 (1239)
T ss_pred cccccch----hHHHHHHH---------hhChHHHHHHHHHHhCCCcEEEechHHHHHHHc-CCCcCccccccc------
Confidence 5554310 00132211 111112334455557899999999999999874 2 1111100
Q ss_pred ccCCCceeeeccccCCCCceeEEEEcc-CCcchhhcccccccCceeEEEeccccccc--------ccc-CCCeEEEEE--
Q 041791 156 NCSLGQRVVHMNYENYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQGV--------KKL-AQRFVPMAF-- 223 (421)
Q Consensus 156 ~~~~~~~v~H~~~~~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~V--------~~L-~~g~~vla~-- 223 (421)
.......|+....+...|..+++.+ .|++...+... ..+.++..|+.+= +.| .++..++-+
T Consensus 1103 --~~~p~l~~N~s~rf~~r~v~~~v~~~~s~~~~~~~~g-----~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd 1175 (1239)
T TIGR01857 1103 --ETSPTLTYNDINRHVSKIVRTRIASTNSPWLSGVSVG-----DIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVD 1175 (1239)
T ss_pred --cCCceeeecCCCCeEEeeeEEEECCCCChhHhcCCCC-----CEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeC
Confidence 0111223333333334466777754 46666665421 1567777887651 122 122222222
Q ss_pred -----------eCCC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 224 -----------ASDG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 224 -----------s~dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
+++| -|+||..++ ++++|.+-||||.....-.+.+-.....+|++.++
T Consensus 1176 ~~g~~t~~~p~NPNGS~~~IaGi~s~d-------Grvlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1176 FNGKPSMDSKYNPNGSSLAIEGITSPD-------GRIFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCCcccCCCCCCCCChhhhhEeECCC-------CCEEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 3445 388999887 78999999999987543222111113567777664
No 89
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.89 E-value=4.4e-08 Score=113.31 Aligned_cols=211 Identities=17% Similarity=0.213 Sum_probs=119.1
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
..+|+|+|+.-+.+.+..- -+.++..+|+.+++|.... ...-...|+.++||++|||.+ |++...
T Consensus 1035 ~~~pkVaVl~~pGtN~~~e-------~~~Af~~aGf~~~~V~~~d-l~~~~~~L~~~~glv~pGGFS-----yGD~l~-- 1099 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGDRE-------MAAAFYAAGFEPWDVTMSD-LLNGRISLDDFRGIVFVGGFS-----YADVLD-- 1099 (1307)
T ss_pred CCCCeEEEEECCCCCCHHH-------HHHHHHHcCCceEEEEeee-cccccccccceeEEEEcCcCC-----Cccccc--
Confidence 3579999999887754331 2456888999887776432 111123467899999999964 444321
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHH-HcCCCEEEEchhhHHHHHHhCCcccccch--hhhcccc-CCCcee
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIE--KEISKNC-SLGQRV 163 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~al-e~~iPiLGIClG~QlLava~GG~v~~~~~--~e~g~~~-~~~~~v 163 (421)
+. --|+.++ .+......-++.++ +.+.++||||.|+|+|... | +..... ..++... ......
T Consensus 1100 sg--~~wa~~i---------~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~l-g--llPg~~~~~~~~~~~~e~~p~l 1165 (1307)
T PLN03206 1100 SA--KGWAGSI---------RFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALL-G--WVPGPQVGGGLGAGGDPSQPRF 1165 (1307)
T ss_pred hH--HHHHHHH---------HhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHc-C--CCCCCccccccccccccCCcee
Confidence 00 0122211 11111223345555 5599999999999999875 3 121110 0000000 011123
Q ss_pred eeccccCCCCceeEEEEcc-CCcchhhcccccccCceeEEEeccccccc---------ccc-CCCeEEEEE---------
Q 041791 164 VHMNYENYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQGV---------KKL-AQRFVPMAF--------- 223 (421)
Q Consensus 164 ~H~~~~~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~V---------~~L-~~g~~vla~--------- 223 (421)
.++....+...|..+++.+ .|++++.+... .+.++..|+++= ..| ..+...+-+
T Consensus 1166 ~~N~s~rfesr~v~v~V~~s~si~l~~~~G~------~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~ 1239 (1307)
T PLN03206 1166 VHNESGRFECRFTSVTIEDSPAIMLKGMEGS------TLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTE 1239 (1307)
T ss_pred eecCCCCeEEeceEEEECCCCChhhcccCCC------EEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccC
Confidence 3444444555677888854 46666655432 566777776541 112 223332222
Q ss_pred ----eCCC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCC
Q 041791 224 ----ASDG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQD 260 (421)
Q Consensus 224 ----s~dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (421)
+++| -|+||..++ ++++|...||||...+.
T Consensus 1240 ~yP~NPNGS~~~IAGi~s~d-------GRvlgmMpHPER~~~~~ 1276 (1307)
T PLN03206 1240 QYPFNPNGSPLGIAALCSPD-------GRHLAMMPHPERCFLMW 1276 (1307)
T ss_pred CCCCCCCCChhhceeeECCC-------CCEEEEcCCHHHhhhhh
Confidence 3444 389999988 78999999999987543
No 90
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.85 E-value=3.6e-08 Score=114.66 Aligned_cols=203 Identities=20% Similarity=0.236 Sum_probs=116.7
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
.+|+|+|+.-+.+.+.. .-..++..+|+.+.++....-... ...|++++||++|||.+ |++... +
T Consensus 1034 ~~pkv~il~~pG~N~~~-------e~~~Af~~aG~~~~~v~~~dl~~~-~~~l~~~~~l~~~GGFS-----~gD~lg--s 1098 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHV-------EMAAAFDRAGFDAIDVHMSDLLAG-RVTLEDFKGLVACGGFS-----YGDVLG--A 1098 (1290)
T ss_pred CCCeEEEEECCCCCCHH-------HHHHHHHHcCCCeEEEEeecCcCC-CCChhhCcEEEECCccC-----Ccccch--H
Confidence 46899999988775433 124568899998877764321110 12367899999999964 444321 0
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHH-HcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecc
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~al-e~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
---|+.++ .+...-...++.++ +.+.++||||.|+|+|... | .+.... + ......++.
T Consensus 1099 --g~~~a~~~---------~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l-g-~l~p~~--~------~~p~l~~N~ 1157 (1290)
T PRK05297 1099 --GEGWAKSI---------LFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL-K-EIIPGA--E------HWPRFVRNR 1157 (1290)
T ss_pred --HHHHHHHh---------hccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh-C-CccCCC--C------CCCeEeecC
Confidence 00122211 00111223344444 6789999999999999875 3 222111 0 011233333
Q ss_pred ccCCCCceeEEEEcc-CCcchhhcccccccCceeEEEeccccccc--------ccc-CCCeEEEEE-------------e
Q 041791 168 YENYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQGV--------KKL-AQRFVPMAF-------------A 224 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~V--------~~L-~~g~~vla~-------------s 224 (421)
...+...|-.+++.. .|++++.+... .+.++..|+++= ..| ..+...+-+ +
T Consensus 1158 s~rfesr~~~~~v~~~~s~~~~~~~g~------~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~N 1231 (1290)
T PRK05297 1158 SEQFEARFSLVEVQESPSIFLQGMAGS------RLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPAN 1231 (1290)
T ss_pred CCCeEEeeeEEEECCCCChhHhhcCCC------EEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCC
Confidence 333445577788754 46666665432 566777776541 112 122222222 3
Q ss_pred CCC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCC
Q 041791 225 SDG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQD 260 (421)
Q Consensus 225 ~dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (421)
++| -|+||..++ ++++|...||||...+.
T Consensus 1232 PNGS~~~IaGi~s~d-------GrvlglMpHPEr~~~~~ 1263 (1290)
T PRK05297 1232 PNGSPNGITGLTTAD-------GRVTIMMPHPERVFRTV 1263 (1290)
T ss_pred CCCChhcceEeECCC-------CCEEEEcCChHHhcchh
Confidence 445 389999988 78999999999987643
No 91
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.83 E-value=2.7e-08 Score=115.46 Aligned_cols=204 Identities=19% Similarity=0.192 Sum_probs=115.6
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
..+|+|.|+.-+.+.+.. + -..++..+|+.+++|....-... ...|+.++||++|||.+ |++...
T Consensus 1053 ~~~p~vail~~pG~N~~~--e-----~~~Af~~aGf~~~~v~~~dl~~~-~~~l~~~~~lv~~GGFS-----ygD~lg-- 1117 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDR--E-----MAAAFDRAGFEAWDVHMSDLLAG-RVHLDEFRGLAACGGFS-----YGDVLG-- 1117 (1310)
T ss_pred CCCceEEEEECCCCCCHH--H-----HHHHHHHhCCCcEEEEEeccccC-CcchhheeEEEEcCCCC-----Cccchh--
Confidence 457999999988765432 1 13467889988887764321110 12356899999999964 454321
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHH-HcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~al-e~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
+. --|+.++ .+......-++.++ +.+.++||||.|+|+|....|- .... + ......|+
T Consensus 1118 sg--~~~a~~i---------~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gl--lp~~--~------~~p~l~~N 1176 (1310)
T TIGR01735 1118 AG--KGWAKSI---------LFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEW--IPGT--E------NWPHFVRN 1176 (1310)
T ss_pred HH--HHHHHHH---------HhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCc--CCCC--C------CCceeeec
Confidence 00 0132211 01111223344444 7789999999999999843331 1110 0 00112233
Q ss_pred cccCCCCceeEEEEcc-CCcchhhcccccccCceeEEEecccccc---c------ccc-CCCeEEEEE------------
Q 041791 167 NYENYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQG---V------KKL-AQRFVPMAF------------ 223 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~---V------~~L-~~g~~vla~------------ 223 (421)
....+...|..+++.+ .|++++.+... .+.++..|+++ + ..| ..+...+-+
T Consensus 1177 ~s~~fe~r~~~~~v~~s~s~~~~~~~g~------~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp 1250 (1310)
T TIGR01735 1177 NSERFEARVASVRVGESPSIMLRGMAGS------RLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYP 1250 (1310)
T ss_pred CCCCeEEeeeEEEECCCCChhhhhcCCC------EEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCC
Confidence 3333444577788754 46666655432 56667777553 1 112 223222222
Q ss_pred -eCCC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCC
Q 041791 224 -ASDG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQD 260 (421)
Q Consensus 224 -s~dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~ 260 (421)
+++| -|+||..++ ++++|...||||...+.
T Consensus 1251 ~NPNGS~~~IaGi~s~d-------Grvl~~MpHPEr~~~~~ 1284 (1310)
T TIGR01735 1251 LNPNGSPGGIAGITSCD-------GRVTIMMPHPERVFRAW 1284 (1310)
T ss_pred CCCCCChhcceEeECCC-------CCEEEEcCCHHHhhhHh
Confidence 2344 389999988 78999999999987543
No 92
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.62 E-value=1e-06 Score=82.79 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=56.2
Q ss_pred hhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccch
Q 041791 28 DFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDK 107 (421)
Q Consensus 28 ~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~ 107 (421)
.|.=+.++++|+++|+.++++....+ +. +..+|+||||||.+ ..+ +.+++
T Consensus 10 ~f~y~e~~~~l~~~G~~v~~~s~~~~-~~----l~~~D~lilPGG~~---~~~-----------~~~L~----------- 59 (198)
T cd03130 10 NFYYPENLELLEAAGAELVPFSPLKD-EE----LPDADGLYLGGGYP---ELF-----------AEELS----------- 59 (198)
T ss_pred ccccHHHHHHHHHCCCEEEEECCCCC-CC----CCCCCEEEECCCch---HHH-----------HHHHH-----------
Confidence 44455678999999999888764322 12 23599999999842 111 11221
Q ss_pred hhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 108 EKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 108 ~rd~~el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
+.......++.+.++++|++|||.|+|+|....
T Consensus 60 -~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 60 -ANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 111234667777888999999999999999865
No 93
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.51 E-value=4.1e-07 Score=85.14 Aligned_cols=75 Identities=23% Similarity=0.157 Sum_probs=52.4
Q ss_pred HHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHH
Q 041791 35 LDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIEL 114 (421)
Q Consensus 35 l~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el 114 (421)
.+++...|+.++++....+ ++.+|+|+||||.+. . +++.|++ .....
T Consensus 16 ~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~~-----~--------~~~~~~~-------------~~~~~ 62 (194)
T cd01750 16 DPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKDT-----I--------QDLAWLR-------------KRGLA 62 (194)
T ss_pred HHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcch-----H--------HHHHHHH-------------HcCHH
Confidence 3456788999888875443 346899999999742 1 1233321 11134
Q ss_pred HHHHHHHHcCCCEEEEchhhHHHHHHhC
Q 041791 115 RLAKLCLERNIPYLGICRGSQVLNVACG 142 (421)
Q Consensus 115 ~li~~ale~~iPiLGIClG~QlLava~G 142 (421)
..++.+.+.++|+||||.|+|+|+..+.
T Consensus 63 ~~i~~~~~~g~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 63 EAIKNYARAGGPVLGICGGYQMLGKYIV 90 (194)
T ss_pred HHHHHHHHCCCcEEEECHHHHHhhhhcc
Confidence 5667777899999999999999998763
No 94
>PHA03366 FGAM-synthase; Provisional
Probab=98.48 E-value=3.4e-06 Score=98.48 Aligned_cols=210 Identities=14% Similarity=0.079 Sum_probs=112.7
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
+..+|+|.|+.-++..+.. .-..++..+|+.+++|.... ...-. .|+.++||++|||.+ |++...+
T Consensus 1025 ~~~~prVaIl~~pG~N~~~-------e~~~Af~~aGf~~~~v~~~d-L~~~~-~l~~f~glv~~GGFS-----~gD~l~~ 1090 (1304)
T PHA03366 1025 PDKRHRVAVLLLPGCPGPH-------ALLAAFTNAGFDPYPVSIEE-LKDGT-FLDEFSGLVIGGSSG-----AEDSYTG 1090 (1304)
T ss_pred CCCCCeEEEEECCCCCCHH-------HHHHHHHHcCCceEEEEeec-CCCCC-ccccceEEEEcCCCC-----CcccccH
Confidence 3467999999988764332 12456888999888776422 11101 167899999999964 4432210
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHH-HcCCCEEEEch-hhHHHHHHhCCcc--cccchhhhccccCCC--
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCL-ERNIPYLGICR-GSQVLNVACGGTL--YQDIEKEISKNCSLG-- 160 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~al-e~~iPiLGICl-G~QlLava~GG~v--~~~~~~e~g~~~~~~-- 160 (421)
---|+..+- +.....+.++.++ +.+.++||||. |+|+|... |- + .......+|+ +.+.
T Consensus 1091 ----~~~~a~~il---------~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l-gl-l~~~~~~~~p~g~-i~~~~~ 1154 (1304)
T PHA03366 1091 ----ARAAVAALL---------SNPAVRDALLRFLNRPDTFSLGCGELGCQILFAL-KA-VGSTAPSPVPGTE-TEEQWP 1154 (1304)
T ss_pred ----HHHHHHHhh---------hchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc-CC-ccCCccccccccc-cccCCC
Confidence 012332210 1111223344555 46999999998 99999874 21 1 0111001111 1111
Q ss_pred ceeeeccccCCCCceeEEEEcc--CCcchhhcccccccCceeEEEeccccc-c--------cccc-CCCeEEEEE-----
Q 041791 161 QRVVHMNYENYDGHRHLVKVVE--DTPLHQWFRDSLEENKMEIMVNSYHHQ-G--------VKKL-AQRFVPMAF----- 223 (421)
Q Consensus 161 ~~v~H~~~~~~~~~~h~V~i~~--~s~L~~~~~~~l~~~~~~~~V~s~H~~-~--------V~~L-~~g~~vla~----- 223 (421)
....|+....+...|-.++|.+ .|.+++.+... .+-+|..|.+ + ...| ..+...+-+
T Consensus 1155 ~~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~~Gs------~lP~w~~g~~~~~~~~~~~~~~~l~~~~~ia~~Y~d~~~ 1228 (1304)
T PHA03366 1155 ITLEPNASGLYESRWLNFYIPETTKSVALRPLRGS------VLPCWAQGTHLGFRYPNDGMEYILRNSGQIAATFHGADV 1228 (1304)
T ss_pred CeEeeeCCCCeEeeceEEEeCCCCCCccccccCCC------CCCEEeCCCccccccCCHHHHHHHHhCCcEEEEEeCCCC
Confidence 1344555555566688888865 35555544332 2223322221 0 0111 122211111
Q ss_pred -----------eCCC--eEEEEEeCCCCCCCCCCcEEEEccccCccCCC
Q 041791 224 -----------ASDG--LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQ 259 (421)
Q Consensus 224 -----------s~dg--~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (421)
+++| -|+||..++ ++++|+.+||||....
T Consensus 1229 ~~g~~t~~yP~NPNGS~~IaGi~s~d-------GR~l~mMphPer~~~~ 1270 (1304)
T PHA03366 1229 DPGNPARHYPRNPTGNSNVAGLCSAD-------GRHLALLFDPSLSFHP 1270 (1304)
T ss_pred CcCccccCCCCCCCcCcceeeEECCC-------CCEEEecCCHHHhhhh
Confidence 2233 589999988 7899999999998754
No 95
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.45 E-value=1.6e-06 Score=91.60 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=47.8
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCC-eEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA-VPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
+|||+.-.+. .++++..|+ .+.++. ..+++. +..+|+||||||......
T Consensus 2 ~iGvlal~sv-------------~~al~~lg~~~~~vv~-~~~~~~----l~~~D~lILPGG~~~~~~------------ 51 (476)
T PRK06278 2 EIGLLDIKGS-------------LPCFENFGNLPTKIID-ENNIKE----IKDLDGLIIPGGSLVESG------------ 51 (476)
T ss_pred EEEEEehhhH-------------HHHHHHhcCCCcEEEE-eCChHH----hccCCEEEECCCchhhcc------------
Confidence 5888887754 234666665 333322 234344 347999999998521000
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
+. ...+.+...+.++||||||.|||||+...
T Consensus 52 ---------------~l-----~~~l~~~i~~~g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 52 ---------------SL-----TDELKKEILNFDGYIIGICSGFQILSEKI 82 (476)
T ss_pred ---------------hH-----HHHHHHHHHHcCCeEEEEcHHHHhccccc
Confidence 00 01222233344999999999999998764
No 96
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.38 E-value=7.4e-06 Score=95.18 Aligned_cols=210 Identities=15% Similarity=0.095 Sum_probs=110.7
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
..+|+|.|+.-++..+.. .-+.++..+|+.+.+|....-.+. +.++.++||+++||.+ |++...
T Consensus 927 ~~~p~VaIl~~pG~N~~~-------e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfs-----y~D~lg-- 990 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSVPH-------GLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASG-----TLDSEV-- 990 (1202)
T ss_pred CCCCeEEEEeCCCCCCHH-------HHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCC-----CCccch--
Confidence 457999999988764332 224568889998887764321110 1245799999999964 333211
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHH-HcCCCEEEEch-hhHHHHHHhCCcccccchhhhccccC--CCcee
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCL-ERNIPYLGICR-GSQVLNVACGGTLYQDIEKEISKNCS--LGQRV 163 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~al-e~~iPiLGICl-G~QlLava~GG~v~~~~~~e~g~~~~--~~~~v 163 (421)
+. --|+.++ .+...-.+-++.++ +.+.++||||. |+|+|... |---+..........++ .....
T Consensus 991 sg--~~~a~~i---------l~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l-g~l~~~~~~~~~~~~~~~~~~~~l 1058 (1202)
T TIGR01739 991 GA--RALAAAL---------LRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLAL-NIVGYTQSSPFITVPTEVQEPPRL 1058 (1202)
T ss_pred HH--HHHHHHh---------hcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHc-CCCcCCcccccccccccccCCcee
Confidence 00 0122211 00111123344555 56999999998 99999874 21101110000000000 11123
Q ss_pred eeccccCCCCceeEEEEcc--CCcchhhcccccccCceeEEEeccccc--cc--------ccc-CCCeEEEEE-------
Q 041791 164 VHMNYENYDGHRHLVKVVE--DTPLHQWFRDSLEENKMEIMVNSYHHQ--GV--------KKL-AQRFVPMAF------- 223 (421)
Q Consensus 164 ~H~~~~~~~~~~h~V~i~~--~s~L~~~~~~~l~~~~~~~~V~s~H~~--~V--------~~L-~~g~~vla~------- 223 (421)
.++....+...|-.+++.+ .|.+++.+... .+.+|. |+. +. ..| ..+...+-+
T Consensus 1059 ~~N~s~~fesr~~~v~i~~~s~si~~~~~~g~------~lp~wv-~g~~~g~~~~~~~~~~~l~~~g~va~~Y~d~~~~~ 1131 (1202)
T TIGR01739 1059 EKNASGLYESRWLNFYIPETTKSVFLRPLRGS------VLPCWA-QGTHLGLYHPDDGVEEELENSGQIASTFHGNSPSS 1131 (1202)
T ss_pred eecCCCCeEEeeeEEEeCCCCCChhhhhcCCC------Eeccce-EeccCCcEECCHHHHHHHHhCCeEEEEEeCCCCCC
Confidence 3444444555688888865 35555555432 333443 322 11 112 122222111
Q ss_pred ---------eCCC--eEEEEEeCCCCCCCCCCcEEEEccccCccCCC
Q 041791 224 ---------ASDG--LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQ 259 (421)
Q Consensus 224 ---------s~dg--~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (421)
+++| -|+||..++ ++++|+.+|||+....
T Consensus 1132 g~~a~~yP~NPNGS~~IAGi~s~d-------GR~l~lMphPer~~~~ 1171 (1202)
T TIGR01739 1132 GLPATNYPRNPSGGSNVAGLCSAD-------GRHLALLIDPSLSFFP 1171 (1202)
T ss_pred CccccCCCCCCCcCcceeeEECCC-------CCEEEecCCHHHhhhh
Confidence 2333 589999988 7899999999998753
No 97
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.37 E-value=5e-07 Score=83.48 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccc-cchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhccc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQ-DIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRD 192 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~GG~v~~-~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~ 192 (421)
.+++.++.++.+|+||||.|+|....+++|.... .....+|- -.|.+ ..+++|++.+++
T Consensus 88 ~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~Gv------------------f~~~~--~~~hpL~~g~~d 147 (175)
T cd03131 88 TEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGV------------------FPHTI--LEPHPLLRGLDD 147 (175)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEEE------------------EEeee--cCCCccccCCCC
Confidence 3567888889999999999999999999887532 22222220 02223 236778888876
Q ss_pred ccccCceeEEEeccccccccc----cCCCeEEEE
Q 041791 193 SLEENKMEIMVNSYHHQGVKK----LAQRFVPMA 222 (421)
Q Consensus 193 ~l~~~~~~~~V~s~H~~~V~~----L~~g~~vla 222 (421)
.|.+.+.|+..|.. ..+++++++
T Consensus 148 -------~F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 148 -------GFDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred -------ceeecCcccccCCHHHHhhCCCCEEcc
Confidence 67888777777642 245566554
No 98
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.32 E-value=4.3e-05 Score=80.51 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=62.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
++|+|..-+.. .|-=+.+++.|++.|+.++.+....+ +. +..+|+|+||||.. ..|...
T Consensus 246 ~~iava~d~af------~f~y~e~~~~L~~~g~~~~~~~~~~~-~~----l~~~D~lilpGG~~---~~~~~~------- 304 (451)
T PRK01077 246 VRIAVARDAAF------NFYYPENLELLRAAGAELVFFSPLAD-EA----LPDCDGLYLGGGYP---ELFAAE------- 304 (451)
T ss_pred ceEEEEecCcc------cccHHHHHHHHHHCCCEEEEeCCcCC-CC----CCCCCEEEeCCCch---hhHHHH-------
Confidence 57777765521 33334467889999999988864322 12 34689999999952 112111
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
+. +.......++.+.++++|++|||.|+|+|...+
T Consensus 305 ---l~-------------~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 305 ---LA-------------ANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred ---Hh-------------hCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 11 111235677888889999999999999999876
No 99
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.32 E-value=4.2e-06 Score=83.07 Aligned_cols=110 Identities=19% Similarity=0.110 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCCEEEEchhhHH-HHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEE-EccCCcchhhcc
Q 041791 114 LRLAKLCLERNIPYLGICRGSQV-LNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVK-VVEDTPLHQWFR 191 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~Ql-Lava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~-i~~~s~L~~~~~ 191 (421)
.+++.++.++..+.|.||.|.|. |...+|-.-......-+| ...-. +.+.++|.+.+.
T Consensus 124 ~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfG--------------------Vf~~~~~~~~~pLl~Gfd 183 (298)
T PF04204_consen 124 TEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFG--------------------VFEHRVLDPDHPLLRGFD 183 (298)
T ss_dssp HHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEE--------------------EEEEEES-SS-GGGTT--
T ss_pred HHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCccee--------------------ceeeeccCCCChhhcCCC
Confidence 36778888899999999999998 666677654332222222 22223 235688988887
Q ss_pred cccccCceeEEEecccccccc--c--cCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 192 DSLEENKMEIMVNSYHHQGVK--K--LAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 192 ~~l~~~~~~~~V~s~H~~~V~--~--L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
+ .|.+.+..+-.+. . ..++++|+|.+++.-+-.+..++ ...+=+|.|||+..
T Consensus 184 d-------~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d-------~r~vfi~GH~EYd~ 239 (298)
T PF04204_consen 184 D-------TFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKD-------GRQVFITGHPEYDA 239 (298)
T ss_dssp S-------EEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECC-------CTEEEE-S-TT--T
T ss_pred c-------cccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCC-------CCEEEEeCCCccCh
Confidence 6 5666444333342 2 37899999999877667777676 46788899999986
No 100
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.27 E-value=5.4e-05 Score=79.74 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=62.6
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
++|+|+-.+- ..|--+.+++.|++.|+.++.+....+ +. +..+|+|+||||. |..+...
T Consensus 245 ~~Iava~d~a------fnFy~~~~~~~L~~~g~~~~~~~~~~d-~~----l~~~d~l~ipGG~---~~~~~~~------- 303 (449)
T TIGR00379 245 VRIAVAQDQA------FNFYYQDNLDALTHNAAELVPFSPLED-TE----LPDVDAVYIGGGF---PELFAEE------- 303 (449)
T ss_pred cEEEEEechh------hceeHHHHHHHHHHCCCEEEEECCccC-CC----CCCCCEEEeCCcH---HHHHHHH-------
Confidence 5777776542 133336788999999999988764322 12 2369999999995 2222111
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
..+...-...++.+.+++.|+||||-|+|+|....
T Consensus 304 ----------------l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 304 ----------------LSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred ----------------HHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 01111224556777788999999999999999876
No 101
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.25 E-value=1.9e-05 Score=71.70 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=17.4
Q ss_pred HHHcC-CCEEEEchhhHHHHHHh
Q 041791 120 CLERN-IPYLGICRGSQVLNVAC 141 (421)
Q Consensus 120 ale~~-iPiLGIClG~QlLava~ 141 (421)
...+. +|+||.|.||-+|..-+
T Consensus 86 fVhn~~k~~WGTCAGmI~LS~ql 108 (226)
T KOG3210|consen 86 FVHNPSKVTWGTCAGMIYLSQQL 108 (226)
T ss_pred HhcCCCccceeechhhhhhhhhh
Confidence 33444 99999999999998754
No 102
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.04 E-value=1.1e-05 Score=76.52 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=65.5
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHC-CCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY-GAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
..|+|++++.-+.... .| ..++.+++.++ |+.++.+.... .++..+.+..+|+|+|+||.- ..
T Consensus 30 ~~~~i~~IptAs~~~~---~~-~~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~~---~~-------- 93 (212)
T cd03146 30 ARPKVLFVPTASGDRD---EY-TARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGGNT---FN-------- 93 (212)
T ss_pred CCCeEEEECCCCCCHH---HH-HHHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCchH---HH--------
Confidence 3578888887654211 22 23567888999 99888775432 223345667899999999841 11
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
-+.++++ .....+++.+.++++|++|||.|+|++...
T Consensus 94 ---~~~~l~~-------------~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 94 ---LLAQWRE-------------HGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred ---HHHHHHH-------------cCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 1222221 122356677778899999999999999764
No 103
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.99 E-value=3.3e-05 Score=76.43 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCEEEEchhhHH-HHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcccc
Q 041791 115 RLAKLCLERNIPYLGICRGSQV-LNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRDS 193 (421)
Q Consensus 115 ~li~~ale~~iPiLGIClG~Ql-Lava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~ 193 (421)
+++.++.++....|.||.|.|. |...+|-.-......-+| | -.|.+. +.++|.+++.+
T Consensus 126 ~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfG--------V----------f~h~~~--~~~pL~rGfdd- 184 (300)
T TIGR01001 126 EIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSG--------V----------YKHDIA--PDSLLLRGFDD- 184 (300)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEE--------e----------ecCccC--CCCccccCCCC-
Confidence 5678888899999999999998 555556443222211122 0 023332 66788888875
Q ss_pred cccCceeEEEecccccccc--c--cCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 194 LEENKMEIMVNSYHHQGVK--K--LAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 194 l~~~~~~~~V~s~H~~~V~--~--L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
.|.+.+..+-.|. . ..+++++++.+++.-+-.+..++ ...+=++-|||+..
T Consensus 185 ------~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d-------~r~vfi~GH~EYd~ 239 (300)
T TIGR01001 185 ------FFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKD-------ERNIFVTGHPEYDA 239 (300)
T ss_pred ------ccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCC-------CCEEEEcCCCccCh
Confidence 5556433322343 1 23689999998776566666665 34556999999985
No 104
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.90 E-value=0.00037 Score=73.10 Aligned_cols=92 Identities=23% Similarity=0.252 Sum_probs=58.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
++|+|.-..- ..|.=+..++.|+++ |..+.+....+ +.+ .++|+|+|+||. |..+.+
T Consensus 234 ~~iavA~D~A------F~FyY~enl~~L~~~-aelv~fSPl~~-~~l----p~~D~l~lpGG~---~e~~~~-------- 290 (433)
T PRK13896 234 PTVAVARDAA------FCFRYPATIERLRER-ADVVTFSPVAG-DPL----PDCDGVYLPGGY---PELHAD-------- 290 (433)
T ss_pred CeEEEEEcCc------cceeCHHHHHHHHhc-CcEEEEcCCCC-CCC----CCCCEEEeCCCc---hhhHHH--------
Confidence 3666654331 244445568889999 88877654333 222 368999999995 233321
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
|++. ...+.-++.+.+.+.|++|||-|+|+|...+
T Consensus 291 ---~L~~-------------n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 291 ---ALAD-------------SPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred ---HHHh-------------CCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 1110 0012455677789999999999999998865
No 105
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.89 E-value=0.0001 Score=66.70 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHHhC
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVACG 142 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava~G 142 (421)
..-|+.+.+.+.||+|||-|+|+|...+-
T Consensus 32 ~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 32 KEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred HHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 45667888899999999999999988753
No 106
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.83 E-value=9.8e-05 Score=81.19 Aligned_cols=207 Identities=19% Similarity=0.253 Sum_probs=114.2
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
+...|+|.|+.-..+..+.-. .-++..+|..++-|.-.+ .-.=.-.|+.+-||++|||.+ |++...+
T Consensus 1055 ~s~~PkVAilREeGvNg~rEM-------a~af~~AgF~~~DVtmtD-lL~G~~~ld~frGlaf~GGFS-----YaDvLgS 1121 (1320)
T KOG1907|consen 1055 SSTAPKVAILREEGVNGDREM-------AAAFYAAGFETVDVTMTD-LLAGRHHLDDFRGLAFCGGFS-----YADVLGS 1121 (1320)
T ss_pred hcCCCceEEeeccccccHHHH-------HHHHHHcCCceeeeeeeh-hhcCceeHhHhcceeeecCcc-----hHhhhcc
Confidence 466799999976555322222 224678999988775321 111112356799999999963 4431100
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM 166 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~ 166 (421)
. --|.... -.-...+..++ +.....+.=-||||.|.|+|+.. |-+.. +.++ .......|+
T Consensus 1122 --a--kGWAasi----l~ne~v~~QF~----~F~~R~DtFslGiCNGCQlms~L--g~i~p----~~~~--~p~~~l~~N 1181 (1320)
T KOG1907|consen 1122 --A--KGWAASI----LFNESVRSQFE----AFFNRQDTFSLGICNGCQLMSRL--GWIGP----EVGK--WPDVFLDHN 1181 (1320)
T ss_pred --c--cchhhhe----eeChhHHHHHH----HHhcCCCceeeecccHhHHHHHh--cccCc----cccC--CCceeeecc
Confidence 0 0021110 00112222222 11123456689999999999875 22211 1211 012234566
Q ss_pred cccCCCCceeEEEEccC-CcchhhcccccccCceeEEEeccccccc---------cc-cCCCeEEEEE------------
Q 041791 167 NYENYDGHRHLVKVVED-TPLHQWFRDSLEENKMEIMVNSYHHQGV---------KK-LAQRFVPMAF------------ 223 (421)
Q Consensus 167 ~~~~~~~~~h~V~i~~~-s~L~~~~~~~l~~~~~~~~V~s~H~~~V---------~~-L~~g~~vla~------------ 223 (421)
....+...+-.|+|..+ |.+...+..+ .+-+|..|+.+= +. ..+++..+-+
T Consensus 1182 es~rfE~r~~~vkI~~~~SIml~gM~gs------~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yP 1255 (1320)
T KOG1907|consen 1182 ESGRFECRFGMVKIESNVSIMLSGMAGS------VLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYP 1255 (1320)
T ss_pred cccceeeeEEEEEeCCCchhhhccccCC------ceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecc
Confidence 66666677788888653 4455555443 567788887651 11 1234444333
Q ss_pred -eCCC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCC
Q 041791 224 -ASDG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQ 259 (421)
Q Consensus 224 -s~dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~ 259 (421)
+++| -|.||..++ +..++..-||||....
T Consensus 1256 fNpNGS~~gIAgicSpd-------GRhLAMMPHpER~~l~ 1288 (1320)
T KOG1907|consen 1256 FNPNGSPDGIAGICSPD-------GRHLAMMPHPERVFLM 1288 (1320)
T ss_pred cCCCCCcccceeeeCCC-------CCeeeccCCchheeee
Confidence 2334 378898887 6789999999998653
No 107
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.80 E-value=8.3e-05 Score=59.45 Aligned_cols=78 Identities=27% Similarity=0.327 Sum_probs=53.1
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
....+.+..+|..+.+++..............+|+||+|||....+... ++.
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~----------------------------~~~ 66 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA----------------------------RDE 66 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc----------------------------cCH
Confidence 3567788899998888886554211112345799999999974221100 112
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHH
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVL 137 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlL 137 (421)
..++.++.+.++++|++|+|.|+|++
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhHhH
Confidence 23566777778899999999999999
No 108
>PRK00784 cobyric acid synthase; Provisional
Probab=97.76 E-value=4.4e-05 Score=81.26 Aligned_cols=76 Identities=22% Similarity=0.203 Sum_probs=51.5
Q ss_pred HHHHHHHH-CCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 33 YHLDLIVS-YGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 33 ~yl~~l~~-~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
.-++.|+. +|+.++.+... +. +..+|||+||||.. ..+. +.|+++ .
T Consensus 266 ~nl~~l~~~~g~~v~~~s~~---~~----l~~~d~lilpGg~~---~~~~----------~~~~~~-------------~ 312 (488)
T PRK00784 266 TDFDPLRAEPGVDVRYVRPG---EP----LPDADLVILPGSKN---TIAD----------LAWLRE-------------S 312 (488)
T ss_pred cChHHHhhcCCCeEEEECCc---cc----cccCCEEEECCccc---hHHH----------HHHHHH-------------c
Confidence 35778887 99988877532 22 34699999999962 1111 122221 1
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
.-...++.+.+.++|+||||.|+|+|+...
T Consensus 313 ~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 313 GWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred CHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 112445677788999999999999999876
No 109
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.57 E-value=0.00023 Score=54.26 Aligned_cols=77 Identities=27% Similarity=0.303 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
.+.+.+...|..+.+++..............+|+||++||++...... ++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~----------------------------~~~~ 67 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA----------------------------WDEA 67 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc----------------------------cCHH
Confidence 456678888988888876554321112345799999999975321100 1122
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVL 137 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlL 137 (421)
..+.+....+++.|++|+|.|+|++
T Consensus 68 ~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 68 LLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHHHHHcCCEEEEEecccccC
Confidence 3455566667789999999999864
No 110
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.34 E-value=0.00059 Score=65.99 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=67.8
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
.|+|+++..-+.. ..+.+|+. .+.+++.+.|+.++.+... ++..+.+..+|+|+++||... .+
T Consensus 31 ~~~v~fIPtAs~~-~~~~~y~~-~~~~af~~lG~~v~~l~~~---~d~~~~l~~ad~I~v~GGnt~---~l--------- 93 (233)
T PRK05282 31 RRKAVFIPYAGVT-QSWDDYTA-KVAEALAPLGIEVTGIHRV---ADPVAAIENAEAIFVGGGNTF---QL--------- 93 (233)
T ss_pred CCeEEEECCCCCC-CCHHHHHH-HHHHHHHHCCCEEEEeccc---hhhHHHHhcCCEEEECCccHH---HH---------
Confidence 5888888876543 33445663 5778899999998877643 233456678999999999521 11
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhC
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~G 142 (421)
+.+++ +..-..+++.++++++|+.|+|.|+-+++...+
T Consensus 94 --~~~l~-------------~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 94 --LKQLY-------------ERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred --HHHHH-------------HCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 11111 112235677788899999999999988766543
No 111
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00021 Score=73.41 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=61.6
Q ss_pred hhhhhccCCCc---------------CCCCccccccchhhhc----------------cccccchHHH-H---HHhhcCc
Q 041791 317 ARNMYSSGGGK---------------VSGQESELQVGAEFLE----------------ANTALSLQQE-N---RLKQMGA 361 (421)
Q Consensus 317 a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------~~~~l~~~~~-~---~~~~~~~ 361 (421)
+|+||++|.++ .+|++|..|++.||++ +||+|++.-+ + .|++.|+
T Consensus 22 c~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV 101 (400)
T COG0458 22 CKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGV 101 (400)
T ss_pred HHHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCC
Confidence 49999999887 8899999999999998 8999998865 2 3778899
Q ss_pred eecccchhHHHHHhhHHHHHHHHHHHhhc
Q 041791 362 TVRNASTYIERLKMNEERERVARNIIGKM 390 (421)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (421)
.| .||..+.|+..|||++|...| .+.
T Consensus 102 ~v--vgs~~eaI~iaeDr~~fke~m-~ei 127 (400)
T COG0458 102 EV--VGSDPEAIEIAEDKKLFKEAM-REI 127 (400)
T ss_pred EE--EecCHHHhhhhhhHHHHHHHH-HHc
Confidence 99 999999999999999997664 444
No 112
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.30 E-value=0.00021 Score=75.92 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 115 RLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 115 ~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
..++.+.+.+.||||||.|||+|...+
T Consensus 310 ~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 310 EEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred HHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 455666788999999999999998864
No 113
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.16 E-value=0.0046 Score=59.13 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 111 TIELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 111 ~~el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
....++++.+.++++|+.+||-|-++|..+.
T Consensus 115 ~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 115 PDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 3456888999999999999999999998875
No 114
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.06 E-value=0.00037 Score=60.15 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHH
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVL 137 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlL 137 (421)
.+.++..++.+.|+||||+|.-+.
T Consensus 67 ~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred cHHHHHHHHCCCcEEEEecCccce
Confidence 356677778999999999998877
No 115
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.01 E-value=0.0025 Score=60.19 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=65.5
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC--ChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT--GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
..|+|+++...+... ..-.+.|.++++++|+..+.++... +.+.+.+.+..+|+|+++||.. ..+
T Consensus 28 ~~~~i~~iptA~~~~----~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~---~~~------ 94 (210)
T cd03129 28 AGARVLFIPTASGDR----DEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ---LRL------ 94 (210)
T ss_pred CCCeEEEEeCCCCCh----HHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH---HHH------
Confidence 358899988765431 2223567888999999988776532 3355667788999999999942 111
Q ss_pred CChhhHHHHHhhccCccccchhhhH-HHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDT-IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~-~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
+..+ +.. ....+.+. ..++.|+.|+|-|..++...
T Consensus 95 -----~~~l-------------~~t~~~~~i~~~-~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 95 -----LSVL-------------RETPLLDAILKR-VARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred -----HHHH-------------HhCChHHHHHHH-HHcCCeEEEcCHHHHHhhhc
Confidence 1111 111 12233344 44899999999999999875
No 116
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.98 E-value=0.0041 Score=57.04 Aligned_cols=28 Identities=36% Similarity=0.581 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+++.+.++++|+.|||.|.++|+.+
T Consensus 97 ~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 97 VLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 3577888889999999999999999875
No 117
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.75 E-value=0.006 Score=64.38 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=45.5
Q ss_pred HHHC-CCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHH
Q 041791 38 IVSY-GAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRL 116 (421)
Q Consensus 38 l~~~-Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~l 116 (421)
+... +..+..++...+ +.++|.|||||.-+ +..+|.|+|+. -++.++
T Consensus 271 L~~~~~v~v~~v~~~~~-------l~~~dlvIlPGsk~-------------t~~DL~~lr~~------------g~d~~i 318 (486)
T COG1492 271 LRAEPDVRVRFVKPGSD-------LRDADLVILPGSKN-------------TIADLKILREG------------GMDEKI 318 (486)
T ss_pred hhcCCCeEEEEeccCCC-------CCCCCEEEeCCCcc-------------cHHHHHHHHHc------------CHHHHH
Confidence 4433 666666664332 23589999999742 23467777642 223456
Q ss_pred HHHHHHcCCCEEEEchhhHHHHHH
Q 041791 117 AKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 117 i~~ale~~iPiLGIClG~QlLava 140 (421)
.+++. .+.||+|||-|||+|...
T Consensus 319 ~~~~~-~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 319 LEYAR-KGGDVIGICGGYQMLGRR 341 (486)
T ss_pred HHHHh-CCCCEEEEcchHHhhhhh
Confidence 66654 599999999999999643
No 118
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.56 E-value=0.016 Score=52.00 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.+.+++++.++++|+.|||-|.++|+.+
T Consensus 83 ~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 83 AVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 3567788888999999999999999875
No 119
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.47 E-value=0.021 Score=51.32 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+++++.++++|+.|||-|.++|+.+
T Consensus 81 l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 81 AVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 3567788888999999999999999874
No 120
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.32 E-value=0.017 Score=55.20 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHHhC
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava~G 142 (421)
...++++.+.++++|+.+||-|-++|+.+.+
T Consensus 113 ~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 113 EVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred HHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 3567889999999999999999999988754
No 121
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.30 E-value=0.11 Score=54.42 Aligned_cols=196 Identities=20% Similarity=0.240 Sum_probs=108.3
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|+|-..+- .+|-=+..++.|+.+||..+......+ +++++ .+|+|.|+||- |..|.++
T Consensus 247 rIAVA~D~A------F~FyY~~nl~~Lr~~GAelv~FSPL~D-~~lP~---~~D~vYlgGGY---PElfA~~-------- 305 (451)
T COG1797 247 RIAVARDAA------FNFYYPENLELLREAGAELVFFSPLAD-EELPP---DVDAVYLGGGY---PELFAEE-------- 305 (451)
T ss_pred eEEEEecch------hccccHHHHHHHHHCCCEEEEeCCcCC-CCCCC---CCCEEEeCCCC---hHHHHHH--------
Confidence 566654332 234444568899999999998765544 23332 59999999993 4444332
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh---CCcccccchhhhccccCCCceeeeccc
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC---GGTLYQDIEKEISKNCSLGQRVVHMNY 168 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~---GG~v~~~~~~e~g~~~~~~~~v~H~~~ 168 (421)
|.. ......-|+.+.+.++|++|=|-|+-.|+..+ .|..+.+.. -+ |.... +..
T Consensus 306 L~~---------------n~~~~~~i~~~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~G-vl----p~~~~---m~~ 362 (451)
T COG1797 306 LSA---------------NESMRRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVG-VL----PGSTR---MTK 362 (451)
T ss_pred Hhh---------------CHHHHHHHHHHHHcCCceEEecccceeehhheeccCCceeeeee-ee----ccchh---hhh
Confidence 211 11234567788889999999999999888764 334444321 11 11100 000
Q ss_pred cCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEe--CCCeE---EEEEeCCCCCCCCC
Q 041791 169 ENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFA--SDGLI---EGFYDPDAYNPQEG 243 (421)
Q Consensus 169 ~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s--~dg~i---eaie~~~~~~~~~~ 243 (421)
.....+...+....++++.. -+. .+.-+.+|.-.+...++ .++...- .+|.. .++..
T Consensus 363 Rl~~lGY~~~~~~~d~~~~~-~G~-------~irGHEFHyS~~~~~~~-~~~a~~~~~g~g~~~~~~G~~~--------- 424 (451)
T COG1797 363 RLQALGYREAEAVDDTLLLR-AGE-------KIRGHEFHYSRLITEED-AEPAFRVRRGDGIDNGRDGYRS--------- 424 (451)
T ss_pred hhhccceeEEEecCCccccc-CCc-------eeeeeeeeeeecccCCc-CceeeeeecccCccccccceee---------
Confidence 00112344555555554322 222 46667777666544333 3333332 22322 24443
Q ss_pred CcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHH
Q 041791 244 KFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAV 280 (421)
Q Consensus 244 ~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~ 280 (421)
++++|.=.|-=..+ ...+...|+++|
T Consensus 425 gnv~asY~H~H~~s-----------~~~~~~~~v~~~ 450 (451)
T COG1797 425 GNVLASYLHLHFAS-----------NPAFAARFVAAA 450 (451)
T ss_pred CCeEEEEEeeeccc-----------CHHHHHHHHHhh
Confidence 46777777754332 256778898876
No 122
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.29 E-value=0.0044 Score=58.92 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=48.5
Q ss_pred HHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHH
Q 041791 38 IVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLA 117 (421)
Q Consensus 38 l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li 117 (421)
.+..|+.+.+++.... +...+ +.+|-+++.||.| |.+.. ..| |- .....-+
T Consensus 30 a~~rgi~v~i~~vsl~-d~~~~--~~~Dl~~~GGgqD-----~eQ~i---------~t~--d~----------~~k~~~l 80 (250)
T COG3442 30 AEKRGIKVEIVEVSLT-DTFPD--DSYDLYFLGGGQD-----YEQEI---------ATR--DL----------LTKKEGL 80 (250)
T ss_pred HHhcCCceEEEEeecC-CCCCc--ccccEEEecCchH-----HHHHH---------Hhh--hh----------ccccHHH
Confidence 4668888777765332 22222 4699999988876 33321 111 10 1123557
Q ss_pred HHHHHcCCCEEEEchhhHHHHHHh
Q 041791 118 KLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 118 ~~ale~~iPiLGIClG~QlLava~ 141 (421)
+.++++++|+|.||-|.|+|...+
T Consensus 81 ~~~i~~g~p~laiCgg~QlLG~yY 104 (250)
T COG3442 81 KDAIENGKPVLAICGGYQLLGQYY 104 (250)
T ss_pred HHHHhcCCcEEEEccchhhcccee
Confidence 888999999999999999997653
No 123
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=95.83 E-value=0.029 Score=53.48 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=65.3
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-----ChhhhhhhcCCcCEEEECCCCCCCCCCccccc
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-----GVHMLLESFEPIHGVLLCEGEDIDPSLYDAEL 84 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-----~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~ 84 (421)
.|+|+++...+... +...+.|.+.+.++|+..+.++... +...+.+.+..+|+|+++||. +..|-
T Consensus 29 ~~~i~~iptA~~~~----~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~---~~~~~--- 98 (217)
T cd03145 29 GARIVVIPAASEEP----AEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGD---QLRIT--- 98 (217)
T ss_pred CCcEEEEeCCCcCh----hHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCc---HHHHH---
Confidence 48899988765431 2234567888899998654333222 234455667889999999994 22221
Q ss_pred cCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 85 SGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 85 ~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.++ +.......++.+++++.|+.|+--|.-++...
T Consensus 99 --------~~l-------------~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 99 --------SAL-------------GGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred --------HHH-------------cCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 111 12223466788888999999999999888654
No 124
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.79 E-value=0.057 Score=47.37 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=57.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-----------h-hhhhh-cCCcCEEEECCCCCCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-----------H-MLLES-FEPIHGVLLCEGEDIDP 77 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------~-~l~~~-l~~~DGVIL~GG~didp 77 (421)
.+|+|+..+...... -....+.+..+|..+.++....++ + .+.+. .+.+|.|++|||.....
T Consensus 2 ~~v~ill~~g~~~~e-----~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGVDAAE-----LSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCcCHHH-----HHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH
Confidence 357777765432111 123466777888887766532210 1 11111 12489999999964210
Q ss_pred CCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 78 SLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 78 ~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
. + ..+.....+++.+.++++|+.+||-|..+|+.+
T Consensus 77 ~-~---------------------------~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 77 A-L---------------------------APSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred H-H---------------------------ccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 0 0 001123466778788999999999999999874
No 125
>PRK04155 chaperone protein HchA; Provisional
Probab=95.75 E-value=0.045 Score=54.57 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...++++++.++++||..||-|-++|..+
T Consensus 168 ~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 168 DVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred HHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 34678899999999999999999877653
No 126
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=95.74 E-value=0.042 Score=53.05 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
..++++++.++++||-.||-|-+.|..+
T Consensus 118 l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 118 VAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred HHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 4578899999999999999999977654
No 127
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=95.63 E-value=0.011 Score=52.48 Aligned_cols=30 Identities=37% Similarity=0.449 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 111 TIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 111 ~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
..-..+++.+.+.++||.+||-|-.+|+.+
T Consensus 58 ~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 58 KDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp HHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 345688899999999999999999888765
No 128
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=95.57 E-value=0.023 Score=54.90 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
..++++.+.++++|+-.||-|-++|..+
T Consensus 116 l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 116 LQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 4578899999999999999999999876
No 129
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.56 E-value=0.13 Score=47.73 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHH
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNV 139 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLav 139 (421)
..+++.+.++++++.+||-|..+|..
T Consensus 89 ~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 89 VETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred HHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 56778888899999999999997544
No 130
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.37 E-value=0.075 Score=48.63 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
..+.++...++++++.+||-|.++|+.+
T Consensus 85 l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 85 LLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred HHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 3566777778899999999999999875
No 131
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=94.99 E-value=0.089 Score=51.31 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCEEEEchhhHHHHHH-hCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEccCCcchhhcccc
Q 041791 115 RLAKLCLERNIPYLGICRGSQVLNVA-CGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRDS 193 (421)
Q Consensus 115 ~li~~ale~~iPiLGIClG~QlLava-~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~ 193 (421)
+++.+...+-.-.|-||.|.|.---. +|-.-+.....-+| + -.|.+ +.+.+++++++.+
T Consensus 126 ~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~G--------V----------y~h~~-l~p~~~l~rGfdd- 185 (307)
T COG1897 126 QIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSG--------V----------YKHDI-LSPHSLLTRGFDD- 185 (307)
T ss_pred HHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhhc--------e----------eeccc-cCccchhhccCCc-
Confidence 44555555667789999999976554 45443332222222 0 02222 3356778887766
Q ss_pred cccCceeEEE-ecccccccc--c--cCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccCC
Q 041791 194 LEENKMEIMV-NSYHHQGVK--K--LAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRN 258 (421)
Q Consensus 194 l~~~~~~~~V-~s~H~~~V~--~--L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (421)
.|.+ .|.|.+ |. . --++++|++.+...-+--+..++ ..-+=+--|||+..+
T Consensus 186 ------~f~~PhSR~t~-~~~e~i~~~~~LeIL~es~e~G~~l~a~k~-------~r~ifv~gH~EYD~~ 241 (307)
T COG1897 186 ------SFLAPHSRYTD-VPKEDILAVPDLEILAESKEAGVYLLASKD-------GRNIFVTGHPEYDAT 241 (307)
T ss_pred ------cccCccccccc-CCHHHHhhCCCceeeecccccceEEEecCC-------CCeEEEeCCcchhhh
Confidence 4444 344433 21 1 12568999988654444455454 334455679999863
No 132
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=94.95 E-value=0.075 Score=51.92 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=64.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCe-EEEEcCC----CChhhhhhhcCCcCEEEECCCCCCCCCCccccc
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV-PVIVPRV----TGVHMLLESFEPIHGVLLCEGEDIDPSLYDAEL 84 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-~vivp~~----~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~ 84 (421)
.|+|+|+..-+.. .+...+.|.+++.++|+. +.++... ...++..+.+...|+|+++||.. ..+-
T Consensus 28 ~~rI~~iptAS~~----~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq---~~l~--- 97 (250)
T TIGR02069 28 DAIIVIITSASEE----PREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQ---LRIT--- 97 (250)
T ss_pred CceEEEEeCCCCC----hHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCH---HHHH---
Confidence 4899999865431 123355788999999995 4444432 12233456678899999999942 1111
Q ss_pred cCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHH
Q 041791 85 SGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNV 139 (421)
Q Consensus 85 ~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLav 139 (421)
.++ ++.....+++.+.+++.|+.|+--|.-+|..
T Consensus 98 --------~~l-------------~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 98 --------SLL-------------GDTPLLDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred --------HHH-------------cCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence 111 1222345678788899999999999988854
No 133
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.71 E-value=0.077 Score=48.15 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava 140 (421)
.++++++.+++.++.+||-|.++|+.+
T Consensus 81 ~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 81 AGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 467788888999999999999999985
No 134
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=94.51 E-value=0.049 Score=48.89 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=52.1
Q ss_pred HHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhH
Q 041791 33 YHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDT 111 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~ 111 (421)
.+.++++++|+.+..++... ..+++.+.+..+|+|+|+||. +..| +.. .++.
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~---~~~l-----------~~~-------------l~~t 56 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD---TFRL-----------LRQ-------------LKET 56 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S----HHHH-----------HHH-------------HHHT
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC---HHHH-----------HHH-------------HHhC
Confidence 46778999999988888655 345666777889999999994 2222 111 1222
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHH
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQV 136 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~Ql 136 (421)
.....++.+.+++.|+.|+--|.-+
T Consensus 57 ~l~~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 57 GLDEAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp THHHHHHHHHHTTSEEEEETHHHHC
T ss_pred CHHHHHHHHHHCCCEEEEEChHHhh
Confidence 3456788888899999999999855
No 135
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=94.27 E-value=0.084 Score=46.90 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
..++++.+.++++++.+||-|..+|+.+
T Consensus 82 l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 82 LIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 3567788888999999999999999986
No 136
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=94.02 E-value=1.5 Score=45.26 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=36.2
Q ss_pred cCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHH
Q 041791 61 FEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNV 139 (421)
Q Consensus 61 l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLav 139 (421)
...++-+|+|||.|.. |.+... ..-.+.|+.+++++--+||||.|.-+.+.
T Consensus 47 ~~~~~LlV~PGG~d~~---y~~~l~-------------------------~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 47 QSKCALLVMPGGADLP---YCRSLN-------------------------GEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred ccCCcEEEECCCcchH---HHHhhC-------------------------hHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 4578999999998642 322110 01135678888899999999999987765
No 137
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=93.94 E-value=0.081 Score=50.48 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+++.+.++++|+.+||-|-.+|+.+
T Consensus 112 l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 112 LQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 4577888889999999999999999875
No 138
>PRK11249 katE hydroperoxidase II; Provisional
Probab=93.67 E-value=0.45 Score=53.29 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=60.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-------hh-hhhhhcC-----CcCEEEECCCCCCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-------VH-MLLESFE-----PIHGVLLCEGEDIDP 77 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-------~~-~l~~~l~-----~~DGVIL~GG~didp 77 (421)
.+|+|+.........+ ....+++.+.|+.+.+|-...+ .. .....++ .+|+|+|+||... +
T Consensus 598 RKIaILVaDG~d~~ev-----~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~-~ 671 (752)
T PRK11249 598 RKVAILLNDGVDAADL-----LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKAN-I 671 (752)
T ss_pred cEEEEEecCCCCHHHH-----HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchh-H
Confidence 5688887665422221 2456788899998887753211 00 0011122 4899999999521 0
Q ss_pred CCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 78 SLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 78 ~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
. . ...+...+.+++.+.+..+||.+||-|.++|+.+
T Consensus 672 ~------------~---------------L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 672 A------------D---------------LADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred H------------H---------------HhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 0 0 0112234577888889999999999999999864
No 139
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=93.65 E-value=0.099 Score=48.05 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
-+++++++.+.++||..||-|-++|..+
T Consensus 88 ~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 88 LLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred HHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 4678899999999999999999999765
No 140
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.06 E-value=0.2 Score=46.15 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.+.+++.+.+++.++.+||-|..+|+.+
T Consensus 93 l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 93 LIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred HHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 3567777888999999999999999874
No 141
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=92.40 E-value=0.23 Score=45.00 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+++.+.++++|+.+||-|..+|+.+
T Consensus 85 l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 85 LLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred HHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 3567778888999999999999999875
No 142
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=91.17 E-value=0.46 Score=43.46 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.+.+++.+.++++.+.+||-|..+|+.+
T Consensus 84 ~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 84 LLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred HHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 3566777778899999999999999864
No 143
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=90.80 E-value=0.89 Score=43.49 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=54.7
Q ss_pred HHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 34 HLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
.-+++...|+.+.-++... +.+.+...+...|+|.+.||..++ =|..+|+ ..
T Consensus 54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~--------------LL~~lke-------------~g 106 (224)
T COG3340 54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFN--------------LLQELKE-------------TG 106 (224)
T ss_pred HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHH--------------HHHHHHH-------------hC
Confidence 3568899999999888765 456677677789999999996321 0222222 22
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQV 136 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~Ql 136 (421)
-..+++..+++++|+.|+-.|.-+
T Consensus 107 ld~iIr~~vk~G~~YiG~SAGA~i 130 (224)
T COG3340 107 LDDIIRERVKAGTPYIGWSAGANI 130 (224)
T ss_pred cHHHHHHHHHcCCceEEeccCcee
Confidence 357889999999999999877643
No 144
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=90.75 E-value=0.35 Score=56.47 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=64.9
Q ss_pred ccCeeeE-eh--hh-------------hhhhhhccCCCc---------------CCCCccccccchhhhc----------
Q 041791 305 KKRKVIV-RS--FS-------------IARNMYSSGGGK---------------VSGQESELQVGAEFLE---------- 343 (421)
Q Consensus 305 ~~~kvl~-~s--~s-------------~a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------- 343 (421)
..||||| +| .. ++|+|++.|.++ .+|+.+..|.+.|+++
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~Da 84 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDA 84 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCE
Confidence 4678988 66 22 459999999887 3566678888888887
Q ss_pred ------cccccchHH----HHHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhc
Q 041791 344 ------ANTALSLQQ----ENRLKQMGATVRNASTYIERLKMNEERERVARNIIGKM 390 (421)
Q Consensus 344 ------~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (421)
++|+|++.. ...|+.+|+++ .|+..+.+...+||..+-+ .|.+.
T Consensus 85 Ilp~~gg~~~l~la~~l~~~~~le~~Gv~~--~G~~~~ai~~~~DK~~~k~-~l~~~ 138 (1050)
T TIGR01369 85 ILPTFGGQTALNLAVELEESGVLEKYGVEV--LGTPVEAIKKAEDRELFRE-AMKEI 138 (1050)
T ss_pred EEECCCChhHHHHHhhHHHHhHHHHCCCEE--ECCCHHHHHHhCCHHHHHH-HHHHC
Confidence 678887654 25799999999 9999999999999999854 55554
No 145
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=90.66 E-value=0.42 Score=43.34 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava 140 (421)
..+++.+.++++|+.+||-|.-+|+.+
T Consensus 84 ~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 84 LDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred HHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 466777778899999999999888774
No 146
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=90.07 E-value=0.37 Score=41.19 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=48.9
Q ss_pred cCeeeE-eh----hhhhhhhhccCCCc---------------CCCCccccc--------cchhhhc-------------c
Q 041791 306 KRKVIV-RS----FSIARNMYSSGGGK---------------VSGQESELQ--------VGAEFLE-------------A 344 (421)
Q Consensus 306 ~~kvl~-~s----~s~a~~~~~~~~~~---------------~~~~~~~~~--------~~~~~~~-------------~ 344 (421)
-||+|| ++ ..+.|.+++.|+.+ .+|+.++++ .+.|.+- |
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pG 81 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPG 81 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEEST
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccc
Confidence 368888 55 55568889999887 677779999 6666655 8
Q ss_pred ccccchHHH--HHHhhcCceecccchhHHHH
Q 041791 345 NTALSLQQE--NRLKQMGATVRNASTYIERL 373 (421)
Q Consensus 345 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 373 (421)
++.||...+ +++++.|.++ .|+.-+.|
T Consensus 82 yg~lse~~~fa~~~~~~gi~f--iGp~~~~i 110 (110)
T PF00289_consen 82 YGFLSENAEFAEACEDAGIIF--IGPSPEAI 110 (110)
T ss_dssp SSTTTTHHHHHHHHHHTT-EE--SSS-HHHH
T ss_pred cchhHHHHHHHHHHHHCCCEE--ECcChHhC
Confidence 899998877 7788999999 88766543
No 147
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=90.06 E-value=0.3 Score=57.10 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=64.8
Q ss_pred ccCeeeE-eh--hh-------------hhhhhhccCCCc---------------CCCCccccccchhhhc----------
Q 041791 305 KKRKVIV-RS--FS-------------IARNMYSSGGGK---------------VSGQESELQVGAEFLE---------- 343 (421)
Q Consensus 305 ~~~kvl~-~s--~s-------------~a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------- 343 (421)
..||||| +| .. ++|+|++.|.++ .+++.|..|...|++.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~ 85 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDA 85 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCE
Confidence 4578998 66 32 459999999887 2455566777777765
Q ss_pred ------cccccchHHH----HHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhcC
Q 041791 344 ------ANTALSLQQE----NRLKQMGATVRNASTYIERLKMNEERERVARNIIGKMS 391 (421)
Q Consensus 344 ------~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (421)
++|+|++..+ ..|+++|+++ .|+..+.+...+||..+ |.+|.+..
T Consensus 86 Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l--~g~~~~~i~~~~DK~~~-k~~l~~~G 140 (1068)
T PRK12815 86 LLATLGGQTALNLAVKLHEDGILEQYGVEL--LGTNIEAIQKGEDRERF-RALMKELG 140 (1068)
T ss_pred EEECCCCchHHHHHHHHHhcCHHHHCCCEE--ECCCHHHHHHhcCHHHH-HHHHHHcC
Confidence 6788888763 4699999999 89999999999999998 55666654
No 148
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.66 E-value=1.7 Score=43.54 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh--------hhhhhhcCCcCEEEECCCCCCCCCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV--------HMLLESFEPIHGVLLCEGEDIDPSL 79 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~--------~~l~~~l~~~DGVIL~GG~didp~~ 79 (421)
+...+|||+.++.... ..-+.....+|+.+.|..+++-+..... ....+..+.+|-+|.-||-.
T Consensus 3 ~~~~~i~iv~~~~~~~---~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG----- 74 (292)
T PRK03378 3 NHFKCIGIVGHPRHPT---ALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG----- 74 (292)
T ss_pred ccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcH-----
Confidence 3456799998874321 1223445577888999877764421110 01122223689999999931
Q ss_pred ccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 80 YDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 80 y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.+...++|+|||-.|.
T Consensus 75 --------------------------------T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 75 --------------------------------NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred --------------------------------HHHHHHHHhcCCCCeEEEEECCC
Confidence 12344555555689999999987
No 149
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.24 E-value=1.8 Score=43.63 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=52.4
Q ss_pred cCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-----------------hhhhhhcCCcCEEE
Q 041791 6 LSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-----------------HMLLESFEPIHGVL 68 (421)
Q Consensus 6 ~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------------~~l~~~l~~~DGVI 68 (421)
+|+. .+|||+.++..... .-+.....+|+.+.|..+++....... .......+.+|-||
T Consensus 2 ~~~~-~~I~iv~~~~~~~~---~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (306)
T PRK03372 2 MTAS-RRVLLVAHTGRDEA---TEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVL 77 (306)
T ss_pred CCCc-cEEEEEecCCCHHH---HHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEE
Confidence 4444 35999988643211 113345577888999887765421110 00012223578899
Q ss_pred ECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 69 LCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 69 L~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-||-. .-+..++.+...++|||||=.|.
T Consensus 78 ~lGGDG-------------------------------------T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 78 VLGGDG-------------------------------------TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred EEcCCH-------------------------------------HHHHHHHHhccCCCcEEEEecCC
Confidence 889831 12455566666799999999886
No 150
>PLN02735 carbamoyl-phosphate synthase
Probab=89.04 E-value=0.38 Score=56.40 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=65.3
Q ss_pred ccCeeeE-eh--hh-------------hhhhhhccCCCc---------------CCCCccccccchhhhc----------
Q 041791 305 KKRKVIV-RS--FS-------------IARNMYSSGGGK---------------VSGQESELQVGAEFLE---------- 343 (421)
Q Consensus 305 ~~~kvl~-~s--~s-------------~a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------- 343 (421)
..||||| +| .. ++|+|++.|.++ .+|+.|..|.+.|++.
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~ 101 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDA 101 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCE
Confidence 4679999 66 32 369999999887 2566678888888876
Q ss_pred ------cccccchHHH----HHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhc
Q 041791 344 ------ANTALSLQQE----NRLKQMGATVRNASTYIERLKMNEERERVARNIIGKM 390 (421)
Q Consensus 344 ------~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (421)
++|+|++..+ ..|+.+|+.+ .|+..+.+...+||..+ |.+|.+.
T Consensus 102 Iip~~gg~~gl~la~~l~~~g~Le~~GI~~--~G~~~~ai~~~~DK~~~-k~~l~~~ 155 (1102)
T PLN02735 102 LLPTMGGQTALNLAVALAESGILEKYGVEL--IGAKLDAIKKAEDRELF-KQAMEKI 155 (1102)
T ss_pred EEECCCchhhHHHHHHHhhhCHHHHCCCEE--ECCCHHHHHHhcCHHHH-HHHHHHC
Confidence 6788877653 5699999999 99999999999999777 5566665
No 151
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=88.66 E-value=0.67 Score=41.58 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 115 RLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 115 ~li~~ale~~iPiLGIClG~QlLava 140 (421)
..++...+++.++.|||-|..+|+.+
T Consensus 84 ~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 84 DWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp HHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred HHhhhhhccceEEeeeehHHHHHhhh
Confidence 44555567789999999999999986
No 152
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=88.44 E-value=1.1 Score=44.88 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=37.0
Q ss_pred ccchHHH-HHHhh-cCceecccchhHHHHHhhHHHHHHHHHHHhhcChHHHhhH------HHHHHHHHH
Q 041791 347 ALSLQQE-NRLKQ-MGATVRNASTYIERLKMNEERERVARNIIGKMSVGQLSDL------ISFYHMMGQ 407 (421)
Q Consensus 347 ~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 407 (421)
.+|...- .+||+ .|.|. ..|+..+++..-++++.. ..+|+.+++.- -.|++...+
T Consensus 245 ~~S~~~l~r~fk~~~g~s~---~~~~~~~Rl~~A~~lL~~---~~~~i~~IA~~~Gf~~~s~F~r~Fk~ 307 (322)
T PRK09393 245 AMSPRTFLRRFEAATGMTP---AEWLLRERLARARDLLES---SALSIDQIAERAGFGSEESLRHHFRR 307 (322)
T ss_pred CcCHHHHHHHHHHHHCcCH---HHHHHHHHHHHHHHHHHc---CCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4555544 55777 49888 889999888776666543 26899998754 445554443
No 153
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=88.26 E-value=2 Score=38.20 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=41.6
Q ss_pred cEEEEEecccc-C-------cccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEEEECCCCCC
Q 041791 11 PRVLIVSRRTV-R-------KNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGVLLCEGEDI 75 (421)
Q Consensus 11 P~igI~~~~~~-~-------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGVIL~GG~di 75 (421)
|+++|++..+. . .++..+.-......++++.|+.+...... ++.+.+. +.++.+|-||.+||...
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 68888876542 1 24555555555566788999987754433 3333333 34457999999999754
No 154
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.84 E-value=0.67 Score=54.23 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=62.8
Q ss_pred ccCeeeE-eh--hh-------------hhhhhhccCCCc---------------CCCCccccccchhhhc----------
Q 041791 305 KKRKVIV-RS--FS-------------IARNMYSSGGGK---------------VSGQESELQVGAEFLE---------- 343 (421)
Q Consensus 305 ~~~kvl~-~s--~s-------------~a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------- 343 (421)
.-||||| +| .. ++|+|++.|.++ .+++.|..|.+.|++.
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~ 85 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDA 85 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCE
Confidence 3579999 66 32 359999999887 2345566677777765
Q ss_pred ------cccccchHHH----HHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhc
Q 041791 344 ------ANTALSLQQE----NRLKQMGATVRNASTYIERLKMNEERERVARNIIGKM 390 (421)
Q Consensus 344 ------~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (421)
++|+|+...+ ..|+.+|+.+ .|+..+.+...+||..+ |.+|.+.
T Consensus 86 Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~--~g~~~~~i~~~~DK~~~-k~~l~~~ 139 (1066)
T PRK05294 86 ILPTMGGQTALNLAVELAESGVLEKYGVEL--IGAKLEAIDKAEDRELF-KEAMKKI 139 (1066)
T ss_pred EEECCCCchhhhhhHHHHhhCHHHHCCCEE--ECCCHHHHHHhcCHHHH-HHHHHHC
Confidence 5677876653 4699999999 99999999999999999 4556654
No 155
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.91 E-value=2.9 Score=41.80 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=51.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-----hhhhhhcCCcCEEEECCCCCCCCCCcccccc
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-----HMLLESFEPIHGVLLCEGEDIDPSLYDAELS 85 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----~~l~~~l~~~DGVIL~GG~didp~~y~~~~~ 85 (421)
.+|||+.++.. . ..-+.....+|+.+.|..+.+-+..... ....+..+.+|-||.-||-.
T Consensus 11 ~~i~ii~~~~~---~-~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG----------- 75 (287)
T PRK14077 11 KKIGLVTRPNV---S-LDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG----------- 75 (287)
T ss_pred CEEEEEeCCcH---H-HHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH-----------
Confidence 47999998752 1 1223445677888999877765422110 01112223589999889831
Q ss_pred CCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 86 GFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 86 ~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.+...++|||||=.|.
T Consensus 76 --------------------------T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 76 --------------------------TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred --------------------------HHHHHHHHhcCCCCcEEEEeCCC
Confidence 12455566556789999999887
No 156
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.29 E-value=5.1 Score=40.13 Aligned_cols=83 Identities=22% Similarity=0.165 Sum_probs=50.1
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-----------h---hhhhhcCCcCEEEECCCCCCCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-----------H---MLLESFEPIHGVLLCEGEDIDP 77 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------~---~l~~~l~~~DGVIL~GG~didp 77 (421)
+|||+.++.... ..-+.....+|+.+.|..+++-+..... . ...+..+.+|-||.-||-.
T Consensus 2 ~igii~~~~~~~---~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG--- 75 (292)
T PRK01911 2 KIAIFGQTYQES---ASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDG--- 75 (292)
T ss_pred EEEEEeCCCCHH---HHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcH---
Confidence 488998764321 1123345577889999887764421110 0 0112223589999999931
Q ss_pred CCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 78 SLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 78 ~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.+...++|||||=.|.
T Consensus 76 ----------------------------------T~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 76 ----------------------------------TFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred ----------------------------------HHHHHHHHhcCCCCCEEEEecCC
Confidence 12455566656789999999987
No 157
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.53 E-value=5.1 Score=40.38 Aligned_cols=84 Identities=18% Similarity=0.108 Sum_probs=50.2
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-----------------hhhhhhcCCcCEEEECCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-----------------HMLLESFEPIHGVLLCEGE 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------------~~l~~~l~~~DGVIL~GG~ 73 (421)
.+|||+.++.... ..-+.....+|+.+.|..+++-+..... ....+..+.+|-+|.-||-
T Consensus 2 ~~igiv~n~~~~~---~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGD 78 (305)
T PRK02649 2 PKAGIIYNDGKPL---AVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGD 78 (305)
T ss_pred CEEEEEEcCCCHH---HHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCc
Confidence 3689998874321 1223445577889999887764421100 0011222357888888983
Q ss_pred CCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 74 DIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 74 didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
+ .-+..++.+...++|+|||=.|.
T Consensus 79 G-------------------------------------TlL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 79 G-------------------------------------TVLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred H-------------------------------------HHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 12455566556799999998875
No 158
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.07 E-value=7.8 Score=38.88 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=50.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-------------hhhhhhhcCCcCEEEECCCCCCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-------------VHMLLESFEPIHGVLLCEGEDIDP 77 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-------------~~~l~~~l~~~DGVIL~GG~didp 77 (421)
.+|+|+.++..... .-+.....+|+.+.|..+++-+.... .....+....+|-+|.-||-.
T Consensus 6 ~~i~ii~~~~~~~~---~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDG--- 79 (296)
T PRK04539 6 HNIGIVTRPNTPDI---QDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDG--- 79 (296)
T ss_pred CEEEEEecCCCHHH---HHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcH---
Confidence 46999988743211 12344557788999988776432111 000111123589899889831
Q ss_pred CCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 78 SLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 78 ~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.+...++|||||=.|.
T Consensus 80 ----------------------------------T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 ----------------------------------TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ----------------------------------HHHHHHHHhcccCCCEEEEecCC
Confidence 12445555556789999999986
No 159
>PRK01215 competence damage-inducible protein A; Provisional
Probab=82.89 E-value=3.4 Score=40.73 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=42.1
Q ss_pred CCCcEEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChh----hhhhhcCCcCEEEECCCCC
Q 041791 8 MILPRVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVH----MLLESFEPIHGVLLCEGED 74 (421)
Q Consensus 8 ~~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~----~l~~~l~~~DGVIL~GG~d 74 (421)
|.+|+++|++-.+ ...+...+.-.....+.+...|+.+..+... ++.+ .+.+.++.+|-||++||-.
T Consensus 1 ~~~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 1 MDKWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred CCCCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 4679999998654 2344444443334455788999987543322 3333 3444556789999999864
No 160
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=82.17 E-value=7.5 Score=38.87 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=50.4
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh--------hhhhhhcCCcCEEEECCCCCCCCCCcc
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV--------HMLLESFEPIHGVLLCEGEDIDPSLYD 81 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~--------~~l~~~l~~~DGVIL~GG~didp~~y~ 81 (421)
...|+|+.++..... .-+....++++...|..+.+....... ....+..+.+|-||..||-.
T Consensus 5 ~~~v~iv~~~~~~~~---~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------- 74 (291)
T PRK02155 5 FKTVALIGRYQTPGI---AEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG------- 74 (291)
T ss_pred CCEEEEEecCCCHHH---HHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH-------
Confidence 356999987743211 113345577888999876654321100 01122223689999999831
Q ss_pred ccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 82 AELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 82 ~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.....++|+|||=.|.
T Consensus 75 ------------------------------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 75 ------------------------------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ------------------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 12345555556789999999887
No 161
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=81.70 E-value=7.1 Score=35.53 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=40.8
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhhhc------CCcCEEEECCCCCCCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLESF------EPIHGVLLCEGEDIDP 77 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~l------~~~DGVIL~GG~didp 77 (421)
..+|+|+|++..+... ...+--+.....++++.|+.++.+... ++.+.+.+.+ +.+|-||++||..+.+
T Consensus 2 ~~~~rv~vit~~d~~~-~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~ 77 (163)
T TIGR02667 2 FIPLRIAILTVSDTRT-EEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTG 77 (163)
T ss_pred CCccEEEEEEEeCcCC-ccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 3568999988654321 222333333345688899987644332 3434333332 3689999999976543
No 162
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=80.20 E-value=5.1 Score=39.26 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=65.6
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE---cC--CCChhhhhhhcCCcCEEEECCCCCCCCCCccccc
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV---PR--VTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAEL 84 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv---p~--~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~ 84 (421)
+..|.|+...+..+ ..+++.|.+..+..|+.-|-+ .+ +.+.+.+...++.++||+++||-. ..|
T Consensus 52 ~A~i~I~paas~ep----~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ---~ri---- 120 (293)
T COG4242 52 KAYIVIIPAASREP----RAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQ---LRI---- 120 (293)
T ss_pred ceEEEEEecCccCh----hhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcc---eee----
Confidence 34677777665433 568888999999999876522 22 233455566788999999999942 111
Q ss_pred cCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHH
Q 041791 85 SGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNV 139 (421)
Q Consensus 85 ~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLav 139 (421)
+...+|.--++.++.-..+++-+-|+--|.-+|..
T Consensus 121 --------------------~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 121 --------------------IGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred --------------------eeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 11122333345566666778999999999988864
No 163
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=80.19 E-value=6.5 Score=34.28 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=37.1
Q ss_pred EEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEEEECCCCCCC
Q 041791 13 VLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGVLLCEGEDID 76 (421)
Q Consensus 13 igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGVIL~GG~did 76 (421)
|+|++..+ ...++..+.-......++.+.|+.+...... ++.+.+. +.++.+|-||.+||..+.
T Consensus 2 v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 2 VAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred EEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 45555433 2234434444444456788899887655433 3433333 345579999999997544
No 164
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=80.19 E-value=1.5 Score=51.38 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=61.3
Q ss_pred ccCeeeE-eh--h----h---------hhhhhhccCCCc---------------CCCCccccccchhhhc----------
Q 041791 305 KKRKVIV-RS--F----S---------IARNMYSSGGGK---------------VSGQESELQVGAEFLE---------- 343 (421)
Q Consensus 305 ~~~kvl~-~s--~----s---------~a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------- 343 (421)
..||||| +| . + ++++|++.|.++ .+|+.|+.|...|.+.
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dg 632 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKG 632 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCE
Confidence 5678988 65 2 1 259999999866 2334466666665543
Q ss_pred ------cccccchHHHHHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhcCh
Q 041791 344 ------ANTALSLQQENRLKQMGATVRNASTYIERLKMNEERERVARNIIGKMSV 392 (421)
Q Consensus 344 ------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (421)
++|++++. +.|+++|+.+ .|+-.+.+...+||.+| +.+|.+..+
T Consensus 633 Vi~~~g~~~~~~la--~~le~~Gi~i--lg~s~~ai~~~~DK~~~-~~~L~~~GI 682 (1066)
T PRK05294 633 VIVQFGGQTPLKLA--KALEAAGVPI--LGTSPDAIDLAEDRERF-SKLLEKLGI 682 (1066)
T ss_pred EEEEeCchhHHHHH--HHHHHCCCce--eCCCHHHHHHhCCHHHH-HHHHHHcCc
Confidence 56777655 7899999999 89999999999999999 667777644
No 165
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=79.85 E-value=1.7 Score=51.05 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=62.8
Q ss_pred ccCeeeE-eh--h----h---------hhhhhhccCCCc---------------CCCCccccccchhhhc----------
Q 041791 305 KKRKVIV-RS--F----S---------IARNMYSSGGGK---------------VSGQESELQVGAEFLE---------- 343 (421)
Q Consensus 305 ~~~kvl~-~s--~----s---------~a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------- 343 (421)
.++|||| ++ + + ++|+|++.|.++ .+|+.|+-|.+.|.+.
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dg 633 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKG 633 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCE
Confidence 4678988 66 2 1 269999999866 2456677777777654
Q ss_pred ------cccccchHHHHHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhcChH
Q 041791 344 ------ANTALSLQQENRLKQMGATVRNASTYIERLKMNEERERVARNIIGKMSVG 393 (421)
Q Consensus 344 ------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (421)
++|++++. ++|+++|+++ .|+-.+.+...++|.+| +.++.+..+.
T Consensus 634 VI~~~g~~~~~~la--~~le~~Gi~i--lG~s~e~i~~~~DK~~f-~~ll~~~GIp 684 (1068)
T PRK12815 634 VIVQFGGQTAINLA--KGLEEAGLTI--LGTSPDTIDRLEDRDRF-YQLLDELGLP 684 (1068)
T ss_pred EEEecCcHHHHHHH--HHHHHCCCeE--ECCcHHHHHHHcCHHHH-HHHHHHcCcC
Confidence 45554444 7899999999 99999999999999998 5677776544
No 166
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=79.48 E-value=15 Score=35.72 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhC
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~G 142 (421)
--.+++...+.+.+|..||-|= +++.+.+
T Consensus 89 v~~lvK~q~~~gkLIaaICaap-~~al~a~ 117 (247)
T KOG2764|consen 89 VVDLVKEQAESGKLIAAICAAP-LTALAAH 117 (247)
T ss_pred HHHHHHHHHhcCCeEEEeecch-HHHHhhc
Confidence 3467788788899999999884 3444433
No 167
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=78.22 E-value=7.6 Score=39.28 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=43.5
Q ss_pred CCCcEEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhh----hcCC-cCEEEECCCCCCCC
Q 041791 8 MILPRVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLE----SFEP-IHGVLLCEGEDIDP 77 (421)
Q Consensus 8 ~~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~----~l~~-~DGVIL~GG~didp 77 (421)
..+|+|+|++..+ ...+...+-.......++.+.|+.++..... ++.+.+.+ .++. +|-||++||..++|
T Consensus 157 ~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg~ 233 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVDP 233 (312)
T ss_pred cCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcccCC
Confidence 3468999998754 3334333444444456788899987644332 34444433 3444 89999999987665
No 168
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=77.49 E-value=11 Score=39.66 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=42.0
Q ss_pred CcEEEEEecccc--C------cccchhhhhhHHHHHHHHCCCeEEEEcCCC-Chhh----hhhhcCCcCEEEECCCCCC
Q 041791 10 LPRVLIVSRRTV--R------KNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHM----LLESFEPIHGVLLCEGEDI 75 (421)
Q Consensus 10 ~P~igI~~~~~~--~------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~----l~~~l~~~DGVIL~GG~di 75 (421)
+|+|+|++..+. . .++.++.-.......++++|+.++.+.... +++. +.+.++.+|-||.+||.++
T Consensus 176 kprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~Sv 254 (404)
T COG0303 176 KPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVSV 254 (404)
T ss_pred CCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCccC
Confidence 599999997641 1 123333322233457788999888666543 3333 3345567999999999754
No 169
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=77.26 E-value=8.2 Score=41.85 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=37.5
Q ss_pred CCCCCcCCCCcEEEEEecccc--CcccchhhhhhHHHHHHHHCCCeEEEEcC
Q 041791 1 MGSSDLSMILPRVLIVSRRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPR 50 (421)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (421)
||.+|-...||.|||+..++. .++.-.+-+.+.--+.++.+|+.|...+.
T Consensus 2 ~G~~~ed~~kP~IgI~ns~~e~~pch~hl~~l~~~vk~gv~~aGg~p~ef~t 53 (535)
T TIGR00110 2 TGFTDEDFGKPFIGVANSYTTIVPGHMHLRDLAQAVKEGIEAAGGVAFEFNT 53 (535)
T ss_pred CCCChHHhCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeEEecC
Confidence 688888889999999998874 34433344555556678899999998764
No 170
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=76.88 E-value=2.1 Score=50.05 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=60.0
Q ss_pred ccCeeeE-eh--h-------------hhhhhhhccCCCc---------------CCCCccccccchhhhc----------
Q 041791 305 KKRKVIV-RS--F-------------SIARNMYSSGGGK---------------VSGQESELQVGAEFLE---------- 343 (421)
Q Consensus 305 ~~~kvl~-~s--~-------------s~a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------- 343 (421)
..||||| || . .++|+|.+.|.++ .+++.|+-|...|.+.
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idg 632 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEG 632 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCE
Confidence 4579998 65 2 3379999999866 2333345555555543
Q ss_pred ------cccccchHHHHHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhcCh
Q 041791 344 ------ANTALSLQQENRLKQMGATVRNASTYIERLKMNEERERVARNIIGKMSV 392 (421)
Q Consensus 344 ------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (421)
++|++++. ++|+++|+.+ .|+-.+.+...+||.+| ++++.+..+
T Consensus 633 VI~~~gg~~~~~la--~~le~~Gi~i--~G~s~~~i~~~~DK~~f-~~lL~~~GI 682 (1050)
T TIGR01369 633 VIVQFGGQTPLNLA--KALEEAGVPI--LGTSPESIDRAEDREKF-SELLDELGI 682 (1050)
T ss_pred EEEccCcHhHHHHH--HHHHHCCCcE--ECCCHHHHHHHCCHHHH-HHHHHHCCc
Confidence 56666665 7899999998 89999999999999998 466777543
No 171
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=76.84 E-value=6.8 Score=42.56 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=37.7
Q ss_pred CCCCCcCCCCcEEEEEecccc--CcccchhhhhhHHHHHHHHCCCeEEEEcC
Q 041791 1 MGSSDLSMILPRVLIVSRRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPR 50 (421)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (421)
||.++....||.|||+..++. .++.-.+-+.+.--+.+.++|+.|..++.
T Consensus 22 ~G~~~edl~kP~IgI~ns~se~~Pch~hl~~la~~Vk~gi~~aGg~p~ef~t 73 (552)
T PRK00911 22 TGLTDEDFDKPFIGIANSWNEITPCNIHLNELADAVKEGVRAAGGVPFEFNT 73 (552)
T ss_pred cCCChHHhcCCEEEEeccccccccchhhHHHHHHHHHHHHHHcCCEeEEeCC
Confidence 688888888999999998874 44443444555556678899999988764
No 172
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=76.34 E-value=15 Score=34.56 Aligned_cols=67 Identities=15% Similarity=0.024 Sum_probs=37.5
Q ss_pred CCcEEEEEecccc-CcccchhhhhhHHHHHHHHCCCe---E--EEEcCCCChh----hhhhhcC--CcCEEEECCCCCCC
Q 041791 9 ILPRVLIVSRRTV-RKNKFVDFVGEYHLDLIVSYGAV---P--VIVPRVTGVH----MLLESFE--PIHGVLLCEGEDID 76 (421)
Q Consensus 9 ~~P~igI~~~~~~-~~~~~~~~v~~~yl~~l~~~Ga~---~--vivp~~~~~~----~l~~~l~--~~DGVIL~GG~did 76 (421)
.+++++|++-.+. ..+...+--+.....++.+.|+. + .++| ++.+ .+.+.++ .+|-||.+||..+.
T Consensus 2 ~~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVp--Dd~~~I~~aL~~a~~~~~~DlIITTGGtg~g 79 (193)
T PRK09417 2 DTLKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIP--DEQDLIEQTLIELVDEMGCDLVLTTGGTGPA 79 (193)
T ss_pred CCcEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECC--CCHHHHHHHHHHHhhcCCCCEEEECCCCCCC
Confidence 4567888775432 23333343333445567778643 2 2444 3333 3334443 69999999997665
Q ss_pred C
Q 041791 77 P 77 (421)
Q Consensus 77 p 77 (421)
|
T Consensus 80 ~ 80 (193)
T PRK09417 80 R 80 (193)
T ss_pred C
Confidence 4
No 173
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=75.83 E-value=8 Score=40.57 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=44.0
Q ss_pred CCCCcCC-CCcEEEEEecccc--------CcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhh----hcCCcCEE
Q 041791 2 GSSDLSM-ILPRVLIVSRRTV--------RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLE----SFEPIHGV 67 (421)
Q Consensus 2 ~~~~~~~-~~P~igI~~~~~~--------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~----~l~~~DGV 67 (421)
|...... .+|+|+|++..+. ..++..+.-......++++.|+.++.+... ++.+.+.+ .++.+|-|
T Consensus 168 G~~~V~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dlv 247 (411)
T PRK10680 168 GIAEVPVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVV 247 (411)
T ss_pred CCCeEEecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEE
Confidence 3333443 3699999986541 123333322222334688899987755432 34444443 34579999
Q ss_pred EECCCCCCCC
Q 041791 68 LLCEGEDIDP 77 (421)
Q Consensus 68 IL~GG~didp 77 (421)
|++||..+++
T Consensus 248 IttGG~S~G~ 257 (411)
T PRK10680 248 ISSGGVSVGE 257 (411)
T ss_pred EEcCCCCCCC
Confidence 9999976543
No 174
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=75.69 E-value=8.6 Score=42.11 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=48.5
Q ss_pred CCCCCcCC--CCcEEEEEecccc--CcccchhhhhhHHHHHHHHCCCeEEEEcCCC------------Chhhhhhhc---
Q 041791 1 MGSSDLSM--ILPRVLIVSRRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT------------GVHMLLESF--- 61 (421)
Q Consensus 1 ~~~~~~~~--~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~------------~~~~l~~~l--- 61 (421)
||.++-.. .+|+|||+..++. .++....-+.+.--+.+.++|+.|+.++... +.+-+.+.+
T Consensus 36 ~G~~~ed~~~~KP~IgI~ns~se~~Pch~hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~iE~~ 115 (596)
T PRK13017 36 YGLTREELQSGKPIIGIAQTGSDLSPCNRHHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLGLVEI 115 (596)
T ss_pred cCCChHHhccCCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHHHHHH
Confidence 57776666 7999999998864 3443334445555667899999998776421 111122221
Q ss_pred ---CCcCEEEECCCCC
Q 041791 62 ---EPIHGVLLCEGED 74 (421)
Q Consensus 62 ---~~~DGVIL~GG~d 74 (421)
..+||+|+.+|-|
T Consensus 116 ~~a~~~Dg~V~i~gCD 131 (596)
T PRK13017 116 LYGYPLDGVVLTTGCD 131 (596)
T ss_pred HhcCCcceEEEeccCC
Confidence 2589999999964
No 175
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.38 E-value=14 Score=37.12 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=34.3
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---h-hhhcCCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---L-LESFEPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l-~~~l~~~DGVIL~GG 72 (421)
...+|+|+.++... . ..-.....++++.+.|..+.+.+....... . ...-+.+|-||..||
T Consensus 2 ~~kkv~lI~n~~~~--~-~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GG 66 (305)
T PRK02645 2 QLKQVIIAYKAGSS--Q-AKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGG 66 (305)
T ss_pred CcCEEEEEEeCCCH--H-HHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECC
Confidence 34578888887321 1 112334457788899988776553221100 0 111235788888888
No 176
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=75.11 E-value=9.4 Score=40.19 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=40.8
Q ss_pred CcEEEEEecccc--------CcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEEEECCCCCCC
Q 041791 10 LPRVLIVSRRTV--------RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGVLLCEGEDID 76 (421)
Q Consensus 10 ~P~igI~~~~~~--------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGVIL~GG~did 76 (421)
+|+|+|++..+. ..++..+.-.......+..+|+.++..... ++.+.+. +.++.+|-||++||..++
T Consensus 193 ~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~G 272 (419)
T PRK14690 193 PLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGASAG 272 (419)
T ss_pred CCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCccCC
Confidence 699999987542 123333422223344688899988744432 3344333 345579999999997553
No 177
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=75.01 E-value=7.7 Score=42.37 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=49.4
Q ss_pred CCCCCcCC-CCcEEEEEecccc--CcccchhhhhhHHHHHHHHCCCeEEEEcCCCC------------hhhhhhh-----
Q 041791 1 MGSSDLSM-ILPRVLIVSRRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG------------VHMLLES----- 60 (421)
Q Consensus 1 ~~~~~~~~-~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~------------~~~l~~~----- 60 (421)
||.+|-.. .||.|||+..++. .++.-.+-+.+.--+.+.++|+.|+.++...- .+-+.+.
T Consensus 32 ~G~~~~d~~~KP~IgI~ns~se~~Pch~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~Dgi~~g~sl~~RelIAdsiE~~~ 111 (577)
T PRK13016 32 MGYAPEDFDGKPVIAILNTWSDANPCHGHFRERVEDVKRGVLQAGGFPLELPALSLSENFVKPTTMLYRNLLAMETEELI 111 (577)
T ss_pred cCCCHHHHhcCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccCcccccCCcccccHHHHHHHHHHHH
Confidence 68888788 7999999998874 34433444555556678899999987754211 1122222
Q ss_pred -cCCcCEEEECCCCC
Q 041791 61 -FEPIHGVLLCEGED 74 (421)
Q Consensus 61 -l~~~DGVIL~GG~d 74 (421)
-..+||+|+.+|-|
T Consensus 112 ~a~~~Dg~V~l~~CD 126 (577)
T PRK13016 112 RSHPVDGAVLMGGCD 126 (577)
T ss_pred hcCCccceEEeccCC
Confidence 23689999999964
No 178
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=74.95 E-value=9.3 Score=41.62 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=41.0
Q ss_pred CcEEEEEecccc--------CcccchhhhhhHHHH-HHHHCCCeEEEEcCC-CChhhhhh----hcCCcCEEEECCCCCC
Q 041791 10 LPRVLIVSRRTV--------RKNKFVDFVGEYHLD-LIVSYGAVPVIVPRV-TGVHMLLE----SFEPIHGVLLCEGEDI 75 (421)
Q Consensus 10 ~P~igI~~~~~~--------~~~~~~~~v~~~yl~-~l~~~Ga~~vivp~~-~~~~~l~~----~l~~~DGVIL~GG~di 75 (421)
+|+|+|++..+. ..++..+. ..+++. +++.+|+.++.++.. ++.+.+.+ .++.+|-||++||...
T Consensus 179 rprV~IisTGdELv~pg~~l~~G~I~ds-Ns~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS~ 257 (546)
T PRK14497 179 KPKIYLIATGDELVEPGNSLSPGKIYES-NLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTSA 257 (546)
T ss_pred CCEEEEEEcCCcccCCCCCCCCCcEEEh-HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccC
Confidence 699999987541 12333332 233444 488899987755433 34444443 4567999999999754
Q ss_pred C
Q 041791 76 D 76 (421)
Q Consensus 76 d 76 (421)
.
T Consensus 258 G 258 (546)
T PRK14497 258 G 258 (546)
T ss_pred C
Confidence 4
No 179
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=74.94 E-value=8.3 Score=40.08 Aligned_cols=68 Identities=24% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCcEEEEEecccc--------CcccchhhhhhHHHHHHHHCCCeEEEEcCCC-Chhhh----hhhcCCcCEEEECCCCCC
Q 041791 9 ILPRVLIVSRRTV--------RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHML----LESFEPIHGVLLCEGEDI 75 (421)
Q Consensus 9 ~~P~igI~~~~~~--------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l----~~~l~~~DGVIL~GG~di 75 (421)
.+|+|+|++..+. ..++..+.-......++.+.|+.++.+.... +.+.+ .+.++.+|-||.+||..+
T Consensus 167 ~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~ 246 (394)
T cd00887 167 RRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVSV 246 (394)
T ss_pred cCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 3699999987542 1344444333344456888999887655433 33333 344556899999999754
Q ss_pred C
Q 041791 76 D 76 (421)
Q Consensus 76 d 76 (421)
.
T Consensus 247 g 247 (394)
T cd00887 247 G 247 (394)
T ss_pred C
Confidence 3
No 180
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=73.21 E-value=10 Score=41.49 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCCCCcCCC-CcEEEEEecccc--CcccchhhhhhHHHHHHHHCCCeEEEEcCCCC------------hhhhhhhc----
Q 041791 1 MGSSDLSMI-LPRVLIVSRRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG------------VHMLLESF---- 61 (421)
Q Consensus 1 ~~~~~~~~~-~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~------------~~~l~~~l---- 61 (421)
||.+|-... ||.|||+..++. .++.-.+-+.+.--+.+..+|+.|..+|.... .+-+.+..
T Consensus 28 ~G~~~ed~~~kP~IgI~ns~se~~Pch~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsiE~~~ 107 (571)
T PRK06131 28 QGYPDELFDGRPIIGICNTWSDLNPCNAHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDVEEMI 107 (571)
T ss_pred cCCChHHhccCCEEEEecccccCcCchhhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHHHHHH
Confidence 678888888 999999998864 34433444555556678999999998775321 12222221
Q ss_pred --CCcCEEEECCCCC
Q 041791 62 --EPIHGVLLCEGED 74 (421)
Q Consensus 62 --~~~DGVIL~GG~d 74 (421)
..+||+|+.||-|
T Consensus 108 ~a~~~Dg~v~i~~CD 122 (571)
T PRK06131 108 RGYPIDGVVLLGGCD 122 (571)
T ss_pred hcCCcceEEEEeeCC
Confidence 3689999999964
No 181
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=72.91 E-value=15 Score=32.82 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=37.3
Q ss_pred EEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhh----hcC--CcCEEEECCCCCCC
Q 041791 12 RVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLE----SFE--PIHGVLLCEGEDID 76 (421)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~----~l~--~~DGVIL~GG~did 76 (421)
+++|++-.+ ...++..+.-......++++.|+.++..... ++.+.+.+ .++ .+|-||.+||..+.
T Consensus 2 ~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred EEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 355554332 3334444433334455688999987654432 34444443 344 79999999997543
No 182
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=72.29 E-value=14 Score=40.58 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=36.1
Q ss_pred CCCCCcCCCCcEEEEEecccc--CcccchhhhhhHHHHHHHHCCCeEEEEcC
Q 041791 1 MGSSDLSMILPRVLIVSRRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPR 50 (421)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (421)
||.+|-...+|.|||+..++. .++.-..-+.+.--+.+..+|+.|..++.
T Consensus 24 ~G~~ded~~kP~IgI~ns~~e~~pch~hl~~la~~vk~gi~~aGG~p~ef~t 75 (615)
T PRK12448 24 TGMKDEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNT 75 (615)
T ss_pred cCCChHHhCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeeEecc
Confidence 678888888999999998864 34433333444555678899999987754
No 183
>PLN02735 carbamoyl-phosphate synthase
Probab=71.38 E-value=4.9 Score=47.36 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=63.6
Q ss_pred ccCeeeE-eh--hh-------------hhhhhhccCCCc---------------CCCCccccccchhhhc----------
Q 041791 305 KKRKVIV-RS--FS-------------IARNMYSSGGGK---------------VSGQESELQVGAEFLE---------- 343 (421)
Q Consensus 305 ~~~kvl~-~s--~s-------------~a~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------- 343 (421)
..||||| || .. .+|+|++.|.++ .+|+.|+.|.+.|-|.
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~ 652 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDG 652 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 6788988 66 22 359999999866 4577788999888765
Q ss_pred ------cccccchHHH--HHHhhc---------CceecccchhHHHHHhhHHHHHHHHHHHhhcCh
Q 041791 344 ------ANTALSLQQE--NRLKQM---------GATVRNASTYIERLKMNEERERVARNIIGKMSV 392 (421)
Q Consensus 344 ------~~~~l~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (421)
++|+|.+... +.|.+. |+++ .|+..+.|.+.+||.++-+ +|.+..+
T Consensus 653 Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i--~G~s~e~i~i~~DK~~~k~-~l~~~GI 715 (1102)
T PLN02735 653 IIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKI--WGTSPDSIDAAEDRERFNA-ILNELKI 715 (1102)
T ss_pred EEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEE--ECCCHHHHHHhcCHHHHHH-HHHHcCC
Confidence 6788776544 445544 6777 8999999999999998755 6777644
No 184
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.75 E-value=20 Score=35.89 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=49.6
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC---h---h--hhhhhcCCcCEEEECCCCCCCCCCccc
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG---V---H--MLLESFEPIHGVLLCEGEDIDPSLYDA 82 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~---~---~--~l~~~l~~~DGVIL~GG~didp~~y~~ 82 (421)
.+|+|+.++.... ..-+.+...+++.+.|..+.+.+.... . . ...+..+.+|-||.-||-.
T Consensus 5 ~~v~iv~~~~k~~---a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG-------- 73 (295)
T PRK01231 5 RNIGLIGRLGSSS---VVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG-------- 73 (295)
T ss_pred CEEEEEecCCCHH---HHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH--------
Confidence 4699998864311 122445567788899988776542210 0 0 0111223578888888831
Q ss_pred cccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 83 ELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 83 ~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.+...++|+|||=.|.
T Consensus 74 -----------------------------t~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 74 -----------------------------SLLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred -----------------------------HHHHHHHHhcCCCCCEEEEeCCc
Confidence 11344455556789999999886
No 185
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=70.26 E-value=29 Score=32.61 Aligned_cols=58 Identities=7% Similarity=0.001 Sum_probs=34.8
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----h-cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----S-FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~-l~~~DGVIL~GG 72 (421)
||++... ..+.|..-+-....++++..|..++++....+.+...+ . -.++||||+..+
T Consensus 2 Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 2 IAVVRYG--GSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred eEEEeec--CCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555532 12444444556667888999998887764434332211 1 127999999765
No 186
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=70.22 E-value=35 Score=32.27 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=37.3
Q ss_pred EEEEEecccc-----CcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-hhhhhhhc--CCcCEEEECCC
Q 041791 12 RVLIVSRRTV-----RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-VHMLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~-----~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~~l~~~l--~~~DGVIL~GG 72 (421)
.|||+..... ..+.+...+-+.-.+.+...|..++++....+ ...+.+.+ .++||||+.+.
T Consensus 5 ~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 5 TIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred EEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 5677763321 23445555555566788889998887765432 23333333 37999999764
No 187
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=68.69 E-value=5.9 Score=38.10 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=30.0
Q ss_pred CcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 63 PIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 63 ~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.--.||+|||.|+- |.+. +|+.- .+.|+...+++=-+||||.|.
T Consensus 49 ~T~lLV~pGGaDlp---Y~~~--------------l~g~g-----------~a~i~~yvk~GG~fLGiCAG~ 92 (253)
T COG4285 49 TTLLLVFPGGADLP---YVQV--------------LQGLG-----------TARIKNYVKEGGNFLGICAGG 92 (253)
T ss_pred ceEEEEecCCCCch---HHHH--------------hcchh-----------hhhHHHHHhcCCeEEEEeccc
Confidence 46789999998752 4332 23221 245667778889999999885
No 188
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=68.44 E-value=21 Score=38.57 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=47.9
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHH-HCCCeEEEEcCCCCh-----------------hhhhhhcCCcCEEEECC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIV-SYGAVPVIVPRVTGV-----------------HMLLESFEPIHGVLLCE 71 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~-~~Ga~~vivp~~~~~-----------------~~l~~~l~~~DGVIL~G 71 (421)
...|||+.++.... ..-+....++||. ..|..+++-+..... ..+.+....+|-||.-|
T Consensus 194 p~~VgIV~n~~k~~---a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiG 270 (508)
T PLN02935 194 PQTVLIITKPNSTS---VRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLG 270 (508)
T ss_pred CCEEEEEecCCCHH---HHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEEC
Confidence 35789998864321 1123344567787 477766653321100 01111223589999889
Q ss_pred CCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 72 GEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 72 G~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
|-+ .-+..++.+...++|||||=+|.
T Consensus 271 GDG-------------------------------------TlL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 271 GDG-------------------------------------TVLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred CcH-------------------------------------HHHHHHHHhccCCCcEEEEeCCC
Confidence 831 12445555556789999998775
No 189
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=68.10 E-value=14 Score=40.81 Aligned_cols=68 Identities=24% Similarity=0.203 Sum_probs=42.7
Q ss_pred CcEEEEEecccc--------CcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEEEECCCCCCC
Q 041791 10 LPRVLIVSRRTV--------RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGVLLCEGEDID 76 (421)
Q Consensus 10 ~P~igI~~~~~~--------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGVIL~GG~did 76 (421)
+|+|+|++..+. ..++..+.-......+++..|+.++..... ++.+.+. +.++.+|-||++||..+.
T Consensus 186 ~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s~g 265 (633)
T PRK14498 186 KPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTSAG 265 (633)
T ss_pred CcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCcCC
Confidence 589999986531 123444444444456788999988754432 3444333 344579999999997654
Q ss_pred C
Q 041791 77 P 77 (421)
Q Consensus 77 p 77 (421)
+
T Consensus 266 ~ 266 (633)
T PRK14498 266 A 266 (633)
T ss_pred C
Confidence 4
No 190
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.84 E-value=39 Score=31.88 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=35.9
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGVIL~GG 72 (421)
|||+... ..+.+..-+-....+.+.+.|..+++.....+.+... ... ..+||||+.++
T Consensus 2 Igvv~~~--~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 2 IGCLVSD--ITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred EEEEecC--CccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 6666642 1344555565666788899999988765443332211 122 36999999865
No 191
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.03 E-value=17 Score=36.10 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHHHHHHCCCeEEEEcCCCCh----h----hhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCcccc
Q 041791 34 HLDLIVSYGAVPVIVPRVTGV----H----MLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAI 105 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~----~----~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~ 105 (421)
..+|+.+.|..+.+-+..... . ...+..+.+|-||.-||-.
T Consensus 5 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------------------------------- 53 (272)
T PRK02231 5 LFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG------------------------------- 53 (272)
T ss_pred HHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH-------------------------------
Confidence 466788899877764421110 0 1122223589999999931
Q ss_pred chhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 106 DKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 106 d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.+...++|||||=.|.
T Consensus 54 ------T~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 54 ------NMLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred ------HHHHHHHHhccCCCcEEEEeCCC
Confidence 12344555556789999999885
No 192
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.20 E-value=22 Score=35.24 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=48.7
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC----hh--hhhhhc-CCcCEEEECCCCCCCCCCccccc
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG----VH--MLLESF-EPIHGVLLCEGEDIDPSLYDAEL 84 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~----~~--~l~~~l-~~~DGVIL~GG~didp~~y~~~~ 84 (421)
+|+|+.++.... ..-+.....+++...|..+.+.+.... .. ...+.. .++|.||..||-.
T Consensus 2 ~v~iv~~~~k~~---~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG---------- 68 (277)
T PRK03708 2 RFGIVARRDKEE---ALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG---------- 68 (277)
T ss_pred EEEEEecCCCHH---HHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH----------
Confidence 588888764311 122344556788999988777542110 00 000111 2689999999931
Q ss_pred cCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 85 SGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 85 ~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++ ....++|++||=.|.
T Consensus 69 ---------------------------TlL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 69 ---------------------------TILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred ---------------------------HHHHHHH-hcCCCCeEEEEeCCC
Confidence 1234455 455689999999887
No 193
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=65.32 E-value=19 Score=32.97 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=36.0
Q ss_pred EEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhh----hhhhcCCcCEEEECCCCCC
Q 041791 13 VLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHM----LLESFEPIHGVLLCEGEDI 75 (421)
Q Consensus 13 igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~----l~~~l~~~DGVIL~GG~di 75 (421)
++|++-.+ ...++..+.-.....+++...|+.+..+... ++.+. +.+.++.+|-||.+||...
T Consensus 2 v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~ 70 (170)
T cd00885 2 AEIIAIGDELLSGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGP 70 (170)
T ss_pred EEEEEECccccCCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 44544332 2344444444445556788999977533322 23333 3344567899999998643
No 194
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=64.89 E-value=20 Score=39.53 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=43.9
Q ss_pred CCCCcCCC-CcEEEEEecccc--C------cccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEE
Q 041791 2 GSSDLSMI-LPRVLIVSRRTV--R------KNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGV 67 (421)
Q Consensus 2 ~~~~~~~~-~P~igI~~~~~~--~------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGV 67 (421)
|-...+.. +|+|+|++..+. . .++..+.-......++++.|+.++.+... ++.+.+. +.++.+|-|
T Consensus 358 Gi~~V~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlI 437 (597)
T PRK14491 358 GFAEVPVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVV 437 (597)
T ss_pred CCCeEEeccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEE
Confidence 33334444 599999986541 1 23333322223445688899988644432 3344333 344679999
Q ss_pred EECCCCCCC
Q 041791 68 LLCEGEDID 76 (421)
Q Consensus 68 IL~GG~did 76 (421)
|.+||..+.
T Consensus 438 IttGG~s~G 446 (597)
T PRK14491 438 ISSGGVSVG 446 (597)
T ss_pred EEcCCccCC
Confidence 999997654
No 195
>PLN02727 NAD kinase
Probab=63.95 E-value=21 Score=41.20 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=48.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHC-CCeEEEEcCCCCh---------------hhhhhhcCCcCEEEECCCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY-GAVPVIVPRVTGV---------------HMLLESFEPIHGVLLCEGED 74 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~~---------------~~l~~~l~~~DGVIL~GG~d 74 (421)
.+|||+..... .... .....++||... |..+++=+...+. ....+..+.+|-||.-||-+
T Consensus 679 rtVgIV~K~~~---ea~~-~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDG 754 (986)
T PLN02727 679 KTVLLLKKLGQ---ELME-EAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDG 754 (986)
T ss_pred CEEEEEcCCcH---HHHH-HHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcH
Confidence 57899987743 2222 223347788887 7665543321110 00112223578888888831
Q ss_pred CCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 75 IDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.+...++|||||=+|.
T Consensus 755 -------------------------------------TlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 755 -------------------------------------VILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred -------------------------------------HHHHHHHHhcCCCCCEEEEeCCC
Confidence 12455566666789999999986
No 196
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=63.23 E-value=43 Score=31.70 Aligned_cols=58 Identities=5% Similarity=-0.014 Sum_probs=36.8
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
|||+... ..+.|...+.....+++.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 2 igv~~~~--~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 2 IGFSQYT--LNSPFFAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred eeEEecc--ccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5666532 2456666677777888999999887766543433222222 26899999753
No 197
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=62.88 E-value=50 Score=30.91 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=36.2
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
|||+... ..+.+...+-....+++...|..+.+.....+.+...+.+ .++||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 2 IGLIIPD--LENRSFARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred EEEEecc--ccCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4555532 2345555565666778889999888776544443222222 27999999875
No 198
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=62.53 E-value=28 Score=30.14 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHCCCeEEEEcC-CCChhhhhh----hcCCcCEEEECCCCCCC
Q 041791 28 DFVGEYHLDLIVSYGAVPVIVPR-VTGVHMLLE----SFEPIHGVLLCEGEDID 76 (421)
Q Consensus 28 ~~v~~~yl~~l~~~Ga~~vivp~-~~~~~~l~~----~l~~~DGVIL~GG~did 76 (421)
+.-......+++++|+.++.... .++.+.+.+ .++.+|-||.+||..+.
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g 70 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPG 70 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCC
Confidence 33334445678899987652221 134444443 34568999999997543
No 199
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=62.52 E-value=52 Score=30.40 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=36.7
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
+||++.... .+.+...+.....++++..|...+++....+.+. +...+ .++||||+.+.
T Consensus 1 ~ig~i~p~~--~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 1 KIGLVVPSL--NNPFWQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred CEEEEeccc--cCHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 356665322 3445566666677788889998888876544332 11111 27999999865
No 200
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=62.21 E-value=49 Score=30.75 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=35.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hh-cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ES-FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~-l~~~DGVIL~GG 72 (421)
|||+... ..+.+..-+....-+++.++|..++++....+.+... .. -..+||||+.+.
T Consensus 2 igvv~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 2 IGVIVPR--LDSFSTSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred eEEEecC--CccchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5666532 2244445555566678889999988776543333221 11 147999999865
No 201
>PLN02929 NADH kinase
Probab=61.69 E-value=20 Score=36.21 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=39.4
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHH
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIE 113 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~e 113 (421)
-.++|++.|..+..+-+.. +...+..+|-||.-||-. .-
T Consensus 39 ~~~~L~~~gi~~~~v~r~~----~~~~~~~~Dlvi~lGGDG-------------------------------------T~ 77 (301)
T PLN02929 39 CKDILQQKSVDWECVLRNE----LSQPIRDVDLVVAVGGDG-------------------------------------TL 77 (301)
T ss_pred HHHHHHHcCCEEEEeeccc----cccccCCCCEEEEECCcH-------------------------------------HH
Confidence 3568889998876554321 133456789999999931 12
Q ss_pred HHHHHHHHHcCCCEEEEchh
Q 041791 114 LRLAKLCLERNIPYLGICRG 133 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG 133 (421)
+..++.+ ..++||+||=.|
T Consensus 78 L~aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 78 LQASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHc-CCCCcEEEEECC
Confidence 3455555 678999999988
No 202
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.68 E-value=54 Score=31.30 Aligned_cols=60 Identities=8% Similarity=0.012 Sum_probs=36.0
Q ss_pred EEEEecccc---CcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh-cCCcCEEEECCC
Q 041791 13 VLIVSRRTV---RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES-FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~---~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-l~~~DGVIL~GG 72 (421)
|||+..... ..+.+...+-....+.+++.|..+++++.....+.+... -..+||||+.+.
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 2 VGVVLTDSLSYAFSDPVASQFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 566653311 245555555556677888999998887654322222211 247999999865
No 203
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=61.61 E-value=52 Score=30.76 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=33.6
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhcC-CcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESFE-PIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l~-~~DGVIL~GG 72 (421)
|||+... . .+.++.-+-....+.+.+.|..+++.....+.+. +....+ ++||||+.+.
T Consensus 2 i~vv~p~-~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 2 IGAIVPT-L-DNAIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred eEEEeCC-C-CCchHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6666643 2 2334444445566788889998887654333332 122222 5899999754
No 204
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.28 E-value=49 Score=31.14 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=36.6
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC--CChhhhhhh-----cCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV--TGVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~-----l~~~DGVIL~GG 72 (421)
+|||+... ..+.|...+.....+++...|..+.++... .+.+...+. -..+||||+.+.
T Consensus 1 ~Igvi~~~--~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKG--TTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecC--CCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 46777632 235556666667778889999988877532 233221111 126999999865
No 205
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=60.49 E-value=64 Score=30.08 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=34.9
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
|||+.... .+.+..-+-....+++.+.|..+++++...+.+. +.... ..+||||+.+.
T Consensus 2 igvv~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 2 IGVIVPDI--RNPYFASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred EEEEecCC--CCccHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 56665321 2344444555666788899998888765434322 11112 26899999875
No 206
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=60.43 E-value=9.9 Score=37.61 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCCEEEEchhh
Q 041791 114 LRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~ 134 (421)
+..++.+...++|+|||=.|.
T Consensus 90 L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 90 LRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp HHHHHHCTTST-EEEEEESSS
T ss_pred HHHHHHhccCCCcEEeecCCC
Confidence 345555555689999999875
No 207
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=60.41 E-value=48 Score=30.84 Aligned_cols=58 Identities=10% Similarity=0.018 Sum_probs=34.1
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGVIL~GG 72 (421)
|||+... . .+.+..-+-....++++.+|..+++.....+.+... ... ..+||||+..+
T Consensus 2 igvv~~~-~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (266)
T cd06282 2 VGVVLPS-L-ANPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA 64 (266)
T ss_pred eEEEeCC-C-CcchHHHHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5666632 1 234444455566678889999988876543332211 111 36999999755
No 208
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.06 E-value=69 Score=30.09 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=36.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGVIL~GG 72 (421)
|||+... ..+.+...+-....+++.+.|..+++.+...+.+... ... ..+||||+.+.
T Consensus 2 Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 2 VGLLVPE--LSNPIFPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred EEEEeCC--CcCchHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5666532 2345556666777888899999988776543322111 111 36899999764
No 209
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.99 E-value=33 Score=37.55 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=47.7
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-hh----h-h--hhhcCCcCEEEECCCCCCCCCCcccc
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-VH----M-L--LESFEPIHGVLLCEGEDIDPSLYDAE 83 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~----~-l--~~~l~~~DGVIL~GG~didp~~y~~~ 83 (421)
+|+|+.++.... ..-+.....+++.+.|..+.+-+.... .. . . ...++.+|-||.-||-.
T Consensus 292 ~i~iv~~~~~~~---~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG--------- 359 (569)
T PRK14076 292 KFGIVSRIDNEE---AINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG--------- 359 (569)
T ss_pred EEEEEcCCCCHH---HHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH---------
Confidence 488887764311 112334456788888987665432110 00 0 0 01123579999999931
Q ss_pred ccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 84 LSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 84 ~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
.-+..++.+...++|||||=.|.
T Consensus 360 ----------------------------T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 360 ----------------------------TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred ----------------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 12345555556789999999886
No 210
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=59.88 E-value=68 Score=29.95 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=35.9
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChh----hhhhhc--CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVH----MLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~----~l~~~l--~~~DGVIL~GG 72 (421)
|||+... . .+.|...+-....+++.++|..+++.....+.+ .+.+.+ ..+||||+.++
T Consensus 2 I~vi~~~-~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 2 IGLLYDN-P-SPGYVSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred EEEEEcC-C-CcccHHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5555532 2 345555566666778889999888776543222 222222 36899999866
No 211
>PRK08211 putative dehydratase; Provisional
Probab=59.79 E-value=19 Score=39.75 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=35.4
Q ss_pred CCCCCcCCCCcEEEEEecccc--------------CcccchhhhhhHHHHHHHHCCCeEEEEcC
Q 041791 1 MGSSDLSMILPRVLIVSRRTV--------------RKNKFVDFVGEYHLDLIVSYGAVPVIVPR 50 (421)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~--------------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (421)
||.++-...||.|+|+..++. ..+.-.+-+.+.-.+.+.++|+.|+..+.
T Consensus 52 ~G~~~~dl~kP~IgI~nt~~~~~~~~~~~~~~~~~pgh~hL~~l~~~vk~gi~~aGG~P~ef~t 115 (655)
T PRK08211 52 MGWDPARLLGKQFLILSTQGGIRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRNGGIPFAGYV 115 (655)
T ss_pred CCCCHHHcCCCEEEEEeCCccccccccccccCCCcCCchhHHHHHHHHHHHHHHcCCeeEEeCC
Confidence 677777788999999998872 22333344555556678889999986654
No 212
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=59.19 E-value=56 Score=30.70 Aligned_cols=58 Identities=7% Similarity=0.049 Sum_probs=35.3
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHH-CCCeEEEEcCCCChhhhhh----hc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVS-YGAVPVIVPRVTGVHMLLE----SF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~-~Ga~~vivp~~~~~~~l~~----~l-~~~DGVIL~GG 72 (421)
|||+... ..+.|..-+.....+++.. .|..+++.....+.+...+ .+ .++||+|+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 2 IGVSMAN--FDDNFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred eeEeecc--cCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5666532 2355666666777788888 8888777654333322222 11 27999999764
No 213
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=58.89 E-value=67 Score=29.87 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=35.9
Q ss_pred EEEEEecccc--CcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh---hhhhhhc--CCcCEEEECCC
Q 041791 12 RVLIVSRRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV---HMLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---~~l~~~l--~~~DGVIL~GG 72 (421)
+|||+..... ..+.+..-+-....+.+.+.|..+.+.....+. +.+.+.+ ..+||+|+.+.
T Consensus 1 ~igvi~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 1 AIGLVLPTGEREEGDPFFAEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred CeEEEeCCcccccCCccHHHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3667663321 234555555556667788899888777644331 2223333 35999999765
No 214
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=58.74 E-value=16 Score=30.34 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=17.7
Q ss_pred CeEEEEcCCCChhhhhhh-cCCcCEEEECCCCC
Q 041791 43 AVPVIVPRVTGVHMLLES-FEPIHGVLLCEGED 74 (421)
Q Consensus 43 a~~vivp~~~~~~~l~~~-l~~~DGVIL~GG~d 74 (421)
...++++.+. .+.+... ...+.||||+||..
T Consensus 41 ~~lvIt~gdR-~di~~~a~~~~i~~iIltg~~~ 72 (105)
T PF07085_consen 41 GDLVITPGDR-EDIQLAAIEAGIACIILTGGLE 72 (105)
T ss_dssp TEEEEEETT--HHHHHHHCCTTECEEEEETT--
T ss_pred CeEEEEeCCc-HHHHHHHHHhCCCEEEEeCCCC
Confidence 3456666554 3333433 34689999999964
No 215
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=58.39 E-value=65 Score=29.48 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=35.6
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----hc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----SF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGVIL~GG 72 (421)
||++...+ ...+..-+.....+++...|...++++...+.+...+ .+ .++||||+.+.
T Consensus 2 ig~v~~~~--~~~~~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 64 (264)
T cd01537 2 IGVLVPDL--DNPFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPS 64 (264)
T ss_pred eEEEEcCC--CChHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 66666543 2334444556667778889988887776544322222 22 27999999765
No 216
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=58.34 E-value=56 Score=30.46 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=35.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
|||+... . .+.+...+.....+++++.|..+++++...+.+. +...+ .++||||+.+.
T Consensus 2 i~vi~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 2 VGVIIPD-I-TNSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred EEEEECC-C-cchHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4555432 1 3445555556666788899998887765433332 11212 37999999864
No 217
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=57.93 E-value=14 Score=27.85 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhcChHHHhhHHHHHHH
Q 041791 378 ERERVARNIIGKMSVGQLSDLISFYHM 404 (421)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (421)
=++.+++..-..+|-++|.+++.||..
T Consensus 5 ~~~~~~~~y~~~ft~~El~~i~~FY~S 31 (64)
T PF09832_consen 5 MIDQMAPIYAEHFTEEELDAILAFYES 31 (64)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCC
Confidence 467788999999999999999999973
No 218
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=57.83 E-value=35 Score=33.79 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=46.2
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-h----hhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-H----MLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~----~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
.|+|+.++.... .......+..++...+-....-+..... . .....-+.+|.++.-||..
T Consensus 2 ~~~i~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDG------------ 66 (281)
T COG0061 2 KVGIVGRPDKPE---ALKIAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDG------------ 66 (281)
T ss_pred eEEEEecCCcHH---HHHHHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcH------------
Confidence 578888875432 2233445566677666555444321100 0 0001113577777777731
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
..+..++.+...++||+||=+|+
T Consensus 67 -------------------------tlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 67 -------------------------TLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred -------------------------HHHHHHHHhccCCCCEEEEeCCC
Confidence 12455566666789999999994
No 219
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=57.48 E-value=76 Score=29.48 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=36.4
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh---hc--CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE---SF--EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~---~l--~~~DGVIL~GG 72 (421)
|+++... . .+.+..-+.....+++...|..++++....+.+.... .+ .++||||+.++
T Consensus 2 i~~v~~~-~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 2 ILVLVPD-I-ANPFFSEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred EEEEECC-C-CCccHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4555533 2 3556666667778889999998887765544322211 11 26999999765
No 220
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=57.45 E-value=61 Score=30.15 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=33.9
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
||++... . .+.+..-+-....+++++.|..+++.+...+.+. +...+ ..+||||+.+.
T Consensus 2 Ig~i~~~-~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 2 VAVLVPS-L-SNSVFADVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred EEEEeCC-C-cchhHHHHHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 4555532 1 2333444445667788899998887765433321 11222 37999999864
No 221
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=57.23 E-value=50 Score=27.73 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCCEEEEch
Q 041791 114 LRLAKLCLERNIPYLGICR 132 (421)
Q Consensus 114 l~li~~ale~~iPiLGICl 132 (421)
..+++.+.+++.|+++||-
T Consensus 64 ~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred HHHHHHHHHCCCeEEEEeC
Confidence 4677889999999999994
No 222
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.19 E-value=70 Score=29.92 Aligned_cols=59 Identities=5% Similarity=-0.045 Sum_probs=36.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hh-cCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ES-FEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~-l~~~DGVIL~GG 72 (421)
+|||+... ..+.+..-+.....+.+...|..+++.....+.+... .. -.++||||+.+.
T Consensus 1 ~i~~~~~~--~~~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 1 VIGASLLT--QQHPFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred CeeEeecC--cccHHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 36666632 2355556666777788889999888766443332111 11 237999999754
No 223
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=57.03 E-value=68 Score=31.39 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=36.7
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEEC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLC 70 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~ 70 (421)
++-+|+|++...+......-.-+....++|++.|..++.+.++...-.... ..++|.|+..
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~-~~~~D~v~~~ 63 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLK-ELGFDRVFNA 63 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhc-cCCCCEEEEe
Confidence 344788888543322211112335678899999999998876644322221 2368988876
No 224
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=57.02 E-value=74 Score=29.15 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=35.6
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hhc-CCcCEEEECCCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ESF-EPIHGVLLCEGE 73 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGVIL~GG~ 73 (421)
|+++.... .+.+...+.....+++...|...++.....+.+... ... .++||||+.+..
T Consensus 2 i~~v~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 2 IGVIVPDI--SNPFFAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred EEEEECCC--CCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCC
Confidence 45555432 234445555666777788898888777655432222 222 379999998763
No 225
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=56.97 E-value=66 Score=29.92 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=34.2
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGVIL~GG 72 (421)
||++... ..+.+..-+-....+++.+.|..+++.....+.+... ... .++||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 2 IGVIVAD--ITNPFSSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred EEEEecC--CccccHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 4555532 1344445555666778889998887766543333211 122 26999999865
No 226
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=56.93 E-value=60 Score=30.88 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=35.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----hc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----SF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGVIL~GG 72 (421)
||++... ..+.|..-+-....+++...|..++++... +.+...+ .. .++||||+.+.
T Consensus 2 Ig~v~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 2 IGFIVKQ--PEEPWFQTEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred eeeecCC--CCCcHHHHHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccC
Confidence 5666532 235555556566678888999988877544 3322222 11 36999999864
No 227
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=56.53 E-value=28 Score=32.21 Aligned_cols=64 Identities=23% Similarity=0.398 Sum_probs=38.9
Q ss_pred EEEEEeccccC-cccchhhhhhHHHHHHHHCCCeE---EEEcCCCChhhh----hhhcCC-cCEEEECCCCCCCC
Q 041791 12 RVLIVSRRTVR-KNKFVDFVGEYHLDLIVSYGAVP---VIVPRVTGVHML----LESFEP-IHGVLLCEGEDIDP 77 (421)
Q Consensus 12 ~igI~~~~~~~-~~~~~~~v~~~yl~~l~~~Ga~~---vivp~~~~~~~l----~~~l~~-~DGVIL~GG~didp 77 (421)
+++|++-.+.+ .+...|--+....++|.++|..+ .+||- +.+.+ .+.... +|.||.+||..+.|
T Consensus 9 ~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D--~~~~I~~~l~~~~~~~~DvvlttGGTG~t~ 81 (169)
T COG0521 9 RIAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPD--DKEQIRATLIALIDEDVDVVLTTGGTGITP 81 (169)
T ss_pred eEEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCC--CHHHHHHHHHHHhcCCCCEEEEcCCccCCC
Confidence 36666644333 33333556667788999999877 35552 22222 232233 89999999987643
No 228
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=56.06 E-value=81 Score=31.49 Aligned_cols=62 Identities=5% Similarity=-0.069 Sum_probs=41.3
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hhc-CCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ESF-EPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGVIL~GG 72 (421)
..+.||++... ..+.|.+-+-....+++.+.|..+++.....+.+... ..+ ..+||||+.+.
T Consensus 24 ~~~~Ig~i~~~--~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 24 KEVKIGMAIDD--LRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CCceEEEEecC--CCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 46788888843 2345666666778889999999988876544433222 122 27999999864
No 229
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.00 E-value=80 Score=29.62 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=30.9
Q ss_pred cccchhhhhhHHHHHHHHCCCeEEEEcCCCChh---hhhhhc--CCcCEEEECCC
Q 041791 23 KNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVH---MLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 23 ~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~l--~~~DGVIL~GG 72 (421)
.+.+..-+-...-+.+...|..+++...+.+.+ .+.+.+ ..+||||+.+.
T Consensus 13 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 13 SPAFYSEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred cCCcHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 355555555566777888999888776543322 111211 36999999763
No 230
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=55.86 E-value=1.8e+02 Score=27.20 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=43.4
Q ss_pred EEEEEeccc-cCcccchhhhhhHHHHHHH-HCCCeEEEEcCCCChhhh-hhhcCCcCEEEECCCC-CCCCCCccccccCC
Q 041791 12 RVLIVSRRT-VRKNKFVDFVGEYHLDLIV-SYGAVPVIVPRVTGVHML-LESFEPIHGVLLCEGE-DIDPSLYDAELSGF 87 (421)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~-~~Ga~~vivp~~~~~~~l-~~~l~~~DGVIL~GG~-didp~~y~~~~~~~ 87 (421)
+|+|++-.. -..............+.++ ..|..+++.. +.+.+ .+.|+.+|.||+.... +. +
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~---~~~~~~~~~L~~~Dvvv~~~~~~~~-----------l 66 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTE---DPDDLTPENLKGYDVVVFYNTGGDE-----------L 66 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECC---SGGCTSHHCHCT-SEEEEE-SSCCG-----------S
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEe---CcccCChhHhcCCCEEEEECCCCCc-----------C
Confidence 577887652 2111122234444455666 3454444332 22222 2357899999998653 10 1
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
+++ ..+.++..++++.+++||..+.
T Consensus 67 ~~~----------------------~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 67 TDE----------------------QRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp -HH----------------------HHHHHHHHHHTT-EEEEEGGGG
T ss_pred CHH----------------------HHHHHHHHHHcCCCEEEEcccc
Confidence 111 1244566678999999998443
No 231
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=54.37 E-value=37 Score=30.55 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=42.0
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc--CCcCEEEECC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF--EPIHGVLLCE 71 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l--~~~DGVIL~G 71 (421)
+.+|+|+|.....+--+.-..++ -++++..|..++..+...+++++.... +..|.|.+|+
T Consensus 10 g~rprvlvak~GlDgHd~gakvi----a~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs 71 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVI----ARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS 71 (143)
T ss_pred CCCceEEEeccCccccccchHHH----HHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe
Confidence 46899999887632111222233 357899999999888877777766554 6899999996
No 232
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=54.30 E-value=73 Score=30.05 Aligned_cols=58 Identities=7% Similarity=-0.101 Sum_probs=35.9
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hh-cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ES-FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~-l~~~DGVIL~GG 72 (421)
||++... ..+.|..-+-....++....|..+++.....+.+... .. -..+||||+.+.
T Consensus 2 ~g~~~~~--~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 2 VGFSQVG--AESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred eeeccCC--CCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4555543 2355555566677788889999988876543432221 11 136999999764
No 233
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.68 E-value=78 Score=29.62 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=34.8
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh-----cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----l~~~DGVIL~GG 72 (421)
|||+... . .+.+..-+-....+.+.+.|..+++.....+.+...+. -..+||||+.+-
T Consensus 2 igvi~p~-~-~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06285 2 IGVLVPR-L-TDTVMATMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDA 64 (265)
T ss_pred EEEEeCC-C-CCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5565542 2 34555555566677888999988776654443322111 237899999753
No 234
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=53.62 E-value=85 Score=30.13 Aligned_cols=58 Identities=3% Similarity=-0.070 Sum_probs=36.9
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
|+|+... ..+.+...+-....+.+.+.|..+.++....+.+...+.+ ..+||||+.+.
T Consensus 2 I~vi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 2 IGLSLPT--KTEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred eEEEEeC--CCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555532 2355556666677788889999988887654433222211 37999999864
No 235
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=53.59 E-value=80 Score=29.69 Aligned_cols=59 Identities=5% Similarity=0.008 Sum_probs=33.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHC---CC--eEEEEcCCCChhhh----hhh-cCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSY---GA--VPVIVPRVTGVHML----LES-FEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~---Ga--~~vivp~~~~~~~l----~~~-l~~~DGVIL~GG 72 (421)
+|||+... ..+.|..-+-....+.+.+. |. ..++.....+.+.. ... -.++||||+.+.
T Consensus 1 ~Ig~i~~~--~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 1 KIGLSNSY--AGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred CeEEeccc--cCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36666632 23455565666667778888 87 34454433332221 111 137999999865
No 236
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=53.08 E-value=31 Score=38.24 Aligned_cols=50 Identities=22% Similarity=0.121 Sum_probs=35.8
Q ss_pred CCCCCcCCCCcEEEEEecccc--------------CcccchhhhhhHHHHHHHHCCCeEEEEcC
Q 041791 1 MGSSDLSMILPRVLIVSRRTV--------------RKNKFVDFVGEYHLDLIVSYGAVPVIVPR 50 (421)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~--------------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (421)
||.++-...||.|+|+..++. ..+.-.+-+.+.--+.+.++|+.|+..+.
T Consensus 46 ~G~~d~dl~kP~I~I~ns~~~~~~~~~~~~~l~~~pgh~hl~~l~~~vk~gi~~aGg~P~ef~t 109 (640)
T TIGR03432 46 MGWDPARLLGKEFLILSTHGGLRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRDGAVPFAGFV 109 (640)
T ss_pred CCCCHHHhCCCEEEEEeCCcccccccccccccCcCCCcccHHHHHHHHHHHHHHcCceeEEeCC
Confidence 677887888999999998773 23333444555556778888998886653
No 237
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.70 E-value=60 Score=32.06 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=29.1
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG 72 (421)
.|+|+.++... ..-+.....+|+++.|..++.- .+.+|-+|.-||
T Consensus 4 ~i~iv~~~~~~----a~~~~~~l~~~l~~~g~~~~~~------------~~~~D~vi~lGG 48 (264)
T PRK03501 4 NLFFFYKRDKE----LVEKVKPLKKIAEEYGFTVVDH------------PKNANIIVSIGG 48 (264)
T ss_pred EEEEEECCCHH----HHHHHHHHHHHHHHCCCEEEcC------------CCCccEEEEECC
Confidence 68888776431 1223444567889999866521 135799999999
No 238
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.24 E-value=33 Score=33.90 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=42.0
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
.|+|+.+... + ..-+.....+++...|... . . +++|-+|.-||-.
T Consensus 2 ~i~Ii~~~~~---~-~~~~~~~l~~~l~~~g~~~---~----~-------~~~Dlvi~iGGDG----------------- 46 (265)
T PRK04885 2 KVAIISNGDP---K-SKRVASKLKKYLKDFGFIL---D----E-------KNPDIVISVGGDG----------------- 46 (265)
T ss_pred EEEEEeCCCH---H-HHHHHHHHHHHHHHcCCcc---C----C-------cCCCEEEEECCcH-----------------
Confidence 3788876321 1 1223445566788888651 1 0 2579999999931
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHH--cCCCEEEEchhh
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLE--RNIPYLGICRGS 134 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale--~~iPiLGIClG~ 134 (421)
.-+..++.+.. .++|++||=.|.
T Consensus 47 --------------------T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 47 --------------------TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred --------------------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 12344455444 589999999886
No 239
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.22 E-value=92 Score=30.27 Aligned_cols=59 Identities=7% Similarity=0.057 Sum_probs=34.3
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChh----hhhhhcC---CcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVH----MLLESFE---PIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~----~l~~~l~---~~DGVIL~GG 72 (421)
|+|+... ...+.|..-+-...-+.+.+.|..++++....+.+ .+...++ ++||||+.+.
T Consensus 2 Igvi~~~-~~~~~~~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 2 VVFLNPG-KSDEPFWNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred eEEecCC-CCCCcHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 4555532 21345555555556677888999887775443332 1222333 6999999754
No 240
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.80 E-value=1.2e+02 Score=28.50 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=35.0
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhh-cCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLES-FEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-l~~~DGVIL~GG 72 (421)
+|||+... ..+.|...+-....+.+.+.|..++++....+.+. +... -..+||||+.+.
T Consensus 1 ~i~vi~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 1 QIAYIVSD--LRIPFWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred CeEEEeCC--CCchHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 35665532 23455555666667778889988887764433321 1121 247999998754
No 241
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=50.32 E-value=40 Score=34.45 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=34.6
Q ss_pred ccchHHHHH--HhhcCceecccchhHHHHHhhHHHHHHHHHHHhhcChHHHhhHH
Q 041791 347 ALSLQQENR--LKQMGATVRNASTYIERLKMNEERERVARNIIGKMSVGQLSDLI 399 (421)
Q Consensus 347 ~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (421)
.||.-|-.| .+++|.|. +-|..+|+++.-|+++- =..||++++....
T Consensus 247 ~~S~R~leRlF~~~lG~sP---~~yy~~lRL~~Ar~LL~---~t~~si~~IA~~~ 295 (328)
T COG4977 247 GLSRRQLERLFRAELGVSP---ARYYLRLRLERARRLLE---QTRLSIAEIAVAC 295 (328)
T ss_pred CCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHH---hCCCcHHHHHHHh
Confidence 667766666 46799998 88999988877666653 2478999987554
No 242
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=50.21 E-value=59 Score=33.74 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=53.1
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcC-CcCEEEECCCC--CCCCCCccccccCCChhhHHHHHhhccCccccchhh
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFE-PIHGVLLCEGE--DIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEK 109 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGVIL~GG~--didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~r 109 (421)
..++||++.--.|+++--..+.+......+ ++|||+++|.+ ..|. .+. .
T Consensus 214 ~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~-----~~~------------------t----- 265 (367)
T PLN02493 214 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDY-----VPA------------------T----- 265 (367)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCC-----chh------------------H-----
Confidence 357899988778999887666655444433 79999999833 3220 000 0
Q ss_pred hHHHHHHHHHHHHcCCCEE---EEchhhHHH-HHHhCCccc
Q 041791 110 DTIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (421)
Q Consensus 110 d~~el~li~~ale~~iPiL---GIClG~QlL-ava~GG~v~ 146 (421)
...+.-+..+...++||+ ||..|..++ +.++|++..
T Consensus 266 -~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV 305 (367)
T PLN02493 266 -ISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 305 (367)
T ss_pred -HHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEE
Confidence 001122333344568988 899999987 557787654
No 243
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=50.16 E-value=77 Score=30.90 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=40.3
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
..|||+.... .+.|..-+-...-+.+.+.|..++++....+.+.- +.+ ..+||||+.+-
T Consensus 2 ~~IGvivp~~--~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDI--SNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSS--TSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCC--CCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEecc
Confidence 4678877654 45565666667778899999999888765554322 222 27999999943
No 244
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=49.57 E-value=1.2e+02 Score=28.62 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=34.2
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC--CChhh----hhhhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV--TGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
|||+... ..+.+...+....-+++++.|..+++...+ .+.+. +...+ .++||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 2 YGVVLKT--LSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred eeEEEec--CCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 5666643 234555556666777888999888776432 12221 11111 36999998754
No 245
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=48.87 E-value=1.5e+02 Score=28.94 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=36.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhh--cCCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLES--FEPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~--l~~~DGVIL~GG 72 (421)
...|||+... ..+.+..-+-....+++...|..+++.....+.+. +.+. -..+||||+.+.
T Consensus 61 ~~~Igvv~~~--~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 61 TRSIGLIIPD--LENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CceEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3578887642 12444444555666778889998877654333321 1111 136999999865
No 246
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=48.73 E-value=2e+02 Score=27.62 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=37.9
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh----c-CCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES----F-EPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~----l-~~~DGVIL~GG 72 (421)
....|||+... ..+.|..-+.....+.+++.|..+++.....+.+..... . ..+||+|+.+.
T Consensus 25 ~~~~I~vi~~~--~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 25 AKDTIALVVST--LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred cCCeEEEEecC--CCChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34578877632 234555556666777888999988876543333222211 1 36999999754
No 247
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=48.32 E-value=72 Score=32.37 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=39.2
Q ss_pred EEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhh----h-cCCcCEEEECCCCCCCC
Q 041791 12 RVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLE----S-FEPIHGVLLCEGEDIDP 77 (421)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~----~-l~~~DGVIL~GG~didp 77 (421)
+++|++-.+ ...++..+.-......++.+.|+.++.+... ++.+.+.+ . .+.+|-||.+||..+.|
T Consensus 157 ~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 157 SAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred EEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 555665433 2344444544445566789999988754432 33443333 2 24689999999976543
No 248
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=47.87 E-value=61 Score=36.24 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=40.9
Q ss_pred CcEEEEEecccc-C--------cccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhh----hcC-CcCEEEECCCCC
Q 041791 10 LPRVLIVSRRTV-R--------KNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLE----SFE-PIHGVLLCEGED 74 (421)
Q Consensus 10 ~P~igI~~~~~~-~--------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~----~l~-~~DGVIL~GG~d 74 (421)
+|+|+|++..+. . .++..+.-......++.+.|+.++.+... ++.+.+.+ .++ .+|-||++||..
T Consensus 181 kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 181 RPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred CCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 699999986541 1 23333333333455788999988754432 34444443 333 689999999975
Q ss_pred C
Q 041791 75 I 75 (421)
Q Consensus 75 i 75 (421)
+
T Consensus 261 ~ 261 (659)
T PLN02699 261 M 261 (659)
T ss_pred C
Confidence 5
No 249
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=47.61 E-value=1.4e+02 Score=29.17 Aligned_cols=61 Identities=10% Similarity=0.142 Sum_probs=37.2
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh---hhc--CCcCEEEECCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL---ESF--EPIHGVLLCEGE 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGVIL~GG~ 73 (421)
..||++... ..+.|...+-....+++...|..++++....+.+... +.+ ..+||||+.+..
T Consensus 65 ~~Igvv~~~--~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 65 GVIGLIVRD--LSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred CEEEEEeCC--CccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 478887643 2344555555666778888998777665443332211 111 368999998753
No 250
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.31 E-value=1.3e+02 Score=24.46 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=29.1
Q ss_pred hHHHHHHHHCCCeEEEE--cCCCChh--hhhhhcCCcCEEEECCCC
Q 041791 32 EYHLDLIVSYGAVPVIV--PRVTGVH--MLLESFEPIHGVLLCEGE 73 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~viv--p~~~~~~--~l~~~l~~~DGVIL~GG~ 73 (421)
..|-+.++++|+..+.. ....... .++..+...|.||+.=+.
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDY 58 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCC
Confidence 34667789999998887 2222222 367777888999988653
No 251
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=47.06 E-value=60 Score=38.51 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=44.0
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC---ChhhhhhhcCC-----cCEEEECCCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT---GVHMLLESFEP-----IHGVLLCEGE 73 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~---~~~~l~~~l~~-----~DGVIL~GG~ 73 (421)
..+|+|||+.-++.....-..++ +..++.|++.|+.|+++-... ..+.+.+.|.. +|+||-+-+.
T Consensus 69 ~~~P~VgIlfyrs~~~~g~~~~v-daLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f 141 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWLSGNTAVV-DALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGF 141 (1098)
T ss_pred CCCCEEEEEeehhhhhcCCcHHH-HHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCcc
Confidence 35799999998764333223334 366899999999998776432 33445566654 8998877664
No 252
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=46.96 E-value=1.2e+02 Score=28.70 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=37.8
Q ss_pred EEEEEecccc---CcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECC
Q 041791 12 RVLIVSRRTV---RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCE 71 (421)
Q Consensus 12 ~igI~~~~~~---~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~G 71 (421)
+||+|..++. -.+.+...+-....++++..|..+++....... ......+||||+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~vdgii~~~ 60 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQELGIELTKFFRDDDL---LEILEDVDGIIAIG 60 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHHcCCEEEEEeccchh---HHhccCcCEEEEec
Confidence 4778876442 235566666666677888899998877653222 22346899999875
No 253
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=46.74 E-value=66 Score=34.18 Aligned_cols=63 Identities=11% Similarity=0.206 Sum_probs=33.3
Q ss_pred cCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHC--CCeEEEEcCC-CC---hhhhh------hhcCCcCEEEEC-CC
Q 041791 6 LSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY--GAVPVIVPRV-TG---VHMLL------ESFEPIHGVLLC-EG 72 (421)
Q Consensus 6 ~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vivp~~-~~---~~~l~------~~l~~~DGVIL~-GG 72 (421)
++....+|||++.++.- +-...++-+.+. .+.+++.|.. .+ .+++. +....+|-||+. ||
T Consensus 131 LP~~p~~IGVITS~tgA-------airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 131 LPFFPKKIGVITSPTGA-------ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred CCCCCCeEEEEcCCchH-------HHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 34445679999988631 212233334432 3555566642 12 22222 234468999999 55
Q ss_pred CCC
Q 041791 73 EDI 75 (421)
Q Consensus 73 ~di 75 (421)
+++
T Consensus 204 GSi 206 (440)
T COG1570 204 GSI 206 (440)
T ss_pred chH
Confidence 543
No 254
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=46.65 E-value=1e+02 Score=28.15 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=33.8
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCC-----eEEEEcCCCChhhhh-hhc--CCcCEEEECC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA-----VPVIVPRVTGVHMLL-ESF--EPIHGVLLCE 71 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-----~~vivp~~~~~~~l~-~~l--~~~DGVIL~G 71 (421)
..+|+|+..+= ....++-+-+.-++.+.++|+ .++.||-..+..... ..+ .++||||..|
T Consensus 10 ~~riaIV~srf--n~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG 77 (158)
T PRK12419 10 PQRIAFIQARW--HADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAA 77 (158)
T ss_pred CCEEEEEEecC--CHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 36888887541 223345555667788999994 333455322211111 111 3699999887
No 255
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=46.50 E-value=1.2e+02 Score=29.28 Aligned_cols=58 Identities=9% Similarity=0.151 Sum_probs=34.4
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE-cCCCChhhhhh----hc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV-PRVTGVHMLLE----SF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~l~~----~l-~~~DGVIL~GG 72 (421)
|+++... ..+.|...+-....+.+.+.|..++++ +...+.+...+ .+ .++||||+.+.
T Consensus 2 I~vi~~~--~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 2 IAFVPKV--TGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred EEEEEcC--CCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5655532 124455556566677888899988765 54433332222 22 36899999753
No 256
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=46.04 E-value=96 Score=34.73 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=39.0
Q ss_pred CCcCCCCcEEEEEecccc-Ccccchh----hhhhHHHHHHHHC-CCeEEEEcCC-CChhhhh----hh--cCCcCEEEEC
Q 041791 4 SDLSMILPRVLIVSRRTV-RKNKFVD----FVGEYHLDLIVSY-GAVPVIVPRV-TGVHMLL----ES--FEPIHGVLLC 70 (421)
Q Consensus 4 ~~~~~~~P~igI~~~~~~-~~~~~~~----~v~~~yl~~l~~~-Ga~~vivp~~-~~~~~l~----~~--l~~~DGVIL~ 70 (421)
.+..+.+|+|+|++..+. ......| .+.+.+-...... |+.++.+... ++.+.+. +. .+.+|-||.+
T Consensus 452 ~~~~~~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItT 531 (659)
T PLN02699 452 IEAQNPEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTL 531 (659)
T ss_pred cccccCCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 345667799999885442 1222222 2222222223334 8877643322 3333333 32 2468999999
Q ss_pred CCCCCCC
Q 041791 71 EGEDIDP 77 (421)
Q Consensus 71 GG~didp 77 (421)
||..+++
T Consensus 532 GGts~g~ 538 (659)
T PLN02699 532 GGTGFTP 538 (659)
T ss_pred CCccCCC
Confidence 9976654
No 257
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=46.02 E-value=56 Score=33.25 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=50.4
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcC-CcCEEEECC--CCCCCCCCccccccCCChhhHHHHHhhccCccccchhhh
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFE-PIHGVLLCE--GEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKD 110 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGVIL~G--G~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd 110 (421)
-++||++.--.|+++.-.-..++.....+ +++|||++. |-.+| |. +..++
T Consensus 214 Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD---~v-------pAtI~----------------- 266 (363)
T KOG0538|consen 214 DIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLD---YV-------PATIE----------------- 266 (363)
T ss_pred hhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccC---cc-------cchHH-----------------
Confidence 46889888888888875443333333333 799999995 43443 11 11111
Q ss_pred HHHHHHHHHHHHcCCCEE---EEchhhHHH-HHHhCCcc
Q 041791 111 TIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTL 145 (421)
Q Consensus 111 ~~el~li~~ale~~iPiL---GIClG~QlL-ava~GG~v 145 (421)
.+.-+-.+.+.++||| |+=.|--++ +.|+|++-
T Consensus 267 --~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~ 303 (363)
T KOG0538|consen 267 --ALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKG 303 (363)
T ss_pred --HHHHHHHHhcCceEEEEecCcccchHHHHHHhcccce
Confidence 1222344567889998 888888766 55677653
No 258
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.80 E-value=1.2e+02 Score=28.56 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=32.7
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHH--CCCeEEEEcCCCChhhhhhh-----cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVS--YGAVPVIVPRVTGVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~--~Ga~~vivp~~~~~~~l~~~-----l~~~DGVIL~GG 72 (421)
|||+-.. . .+.+..-+-....+++.+ .|..+++.+...+.+...+. -..+||||+.+.
T Consensus 2 Ig~v~~~-~-~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 2 IGVSVGD-L-GNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV 66 (271)
T ss_pred eEEEecc-c-CCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 5555532 1 344545555666778888 67666665544343222221 237999999754
No 259
>PRK03673 hypothetical protein; Provisional
Probab=45.76 E-value=59 Score=34.08 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=39.3
Q ss_pred CcEEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcC-CCChhhhhh----hcCCcCEEEECCCC
Q 041791 10 LPRVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPR-VTGVHMLLE----SFEPIHGVLLCEGE 73 (421)
Q Consensus 10 ~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~-~~~~~~l~~----~l~~~DGVIL~GG~ 73 (421)
+|++.|++-.+ .-.++..+.=..+..+++...|..+..... .++.+.+.+ .++.+|-||++||-
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGl 70 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGL 70 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCC
Confidence 37888888664 234444443333344568899998754432 234444443 45578999999984
No 260
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=45.50 E-value=91 Score=31.14 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCCEEE
Q 041791 114 LRLAKLCLERNIPYLG 129 (421)
Q Consensus 114 l~li~~ale~~iPiLG 129 (421)
..+++...+..+||+-
T Consensus 97 e~varai~~~~~Pvis 112 (319)
T PF02601_consen 97 EEVARAIAASPIPVIS 112 (319)
T ss_pred HHHHHHHHhCCCCEEE
Confidence 4677777788999874
No 261
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.13 E-value=1.3e+02 Score=28.04 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=34.6
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh-----cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----l~~~DGVIL~GG 72 (421)
|+++... ...+.+...+.....+++.+.|..+++.....+.+...+. -.++||||+.+.
T Consensus 2 i~vi~p~-~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (275)
T cd06317 2 IGYTQNN-VGSHSYQTTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPT 65 (275)
T ss_pred eEEEecc-cCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555532 1034455556566677788899988877644343222111 137999999764
No 262
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=45.04 E-value=1.5e+02 Score=29.90 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=38.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----h-cCCcCEEEECC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----S-FEPIHGVLLCE 71 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~-l~~~DGVIL~G 71 (421)
-.||++.... .+.+..-+-...-+.+.+.|...++.....+.+.... . -..+||||+.|
T Consensus 59 ~~Ig~i~p~~--~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 59 KTIGLVVPDI--TNPFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CEEEEEeCCC--CCchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4677777632 2345444555667788899999998887664433221 1 13699999999
No 263
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=44.85 E-value=1.7e+02 Score=28.60 Aligned_cols=59 Identities=15% Similarity=0.002 Sum_probs=35.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----h-cCCcCEEEECC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----S-FEPIHGVLLCE 71 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~-l~~~DGVIL~G 71 (421)
..||++... ..+.|..-+-....+.+.+.|..+++.+...+.+...+ . -..+||||+.+
T Consensus 64 ~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 64 RAIGVLLPS--LTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CEEEEEeCC--CcchhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 467777642 22445555556667778889988877665433322111 1 13799999975
No 264
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=44.60 E-value=1.1e+02 Score=28.34 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=29.0
Q ss_pred ccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECC
Q 041791 24 NKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCE 71 (421)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~G 71 (421)
+.+..-+.....+.+.+.|..+++.+...+.+...+.+ .++||||+.+
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 11 NPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred CHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 44444455556677888898887776543433222111 2699999964
No 265
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=44.38 E-value=1.1e+02 Score=28.45 Aligned_cols=58 Identities=14% Similarity=0.069 Sum_probs=36.7
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE-cCCCChhhhhhh-----cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV-PRVTGVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~l~~~-----l~~~DGVIL~GG 72 (421)
|+|+..... +.|...+....-++....|....++ +...+.+...+. -.++||||+...
T Consensus 1 I~vi~~~~~--~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~ 64 (257)
T PF13407_consen 1 IGVIVPSMD--NPFWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPV 64 (257)
T ss_dssp EEEEESSSS--SHHHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESS
T ss_pred cEEEeCCCC--CHHHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCC
Confidence 344444322 3356666677778888999999886 655554333322 237899998865
No 266
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.20 E-value=1.5e+02 Score=28.48 Aligned_cols=58 Identities=9% Similarity=-0.070 Sum_probs=33.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE-cCCCChhh----hhhh-cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV-PRVTGVHM----LLES-FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~----l~~~-l~~~DGVIL~GG 72 (421)
||++... ..+.+...+-....+++.+.|..++++ +...+.+. +... -.++||||+.+.
T Consensus 2 i~~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~ 65 (294)
T cd06316 2 AAIVMHT--SGSDWSNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPV 65 (294)
T ss_pred eEEEecC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4555532 124455556666678888999988755 33223321 2121 237899999743
No 267
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=44.12 E-value=1.3e+02 Score=29.32 Aligned_cols=50 Identities=6% Similarity=-0.025 Sum_probs=32.3
Q ss_pred cccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 23 KNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 23 ~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
.+.+..-+-+...+++...|..+++.+...+.+...+.+ .++||||+.+.
T Consensus 9 ~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 9 RLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345555566677788899999888776544433222222 36999999854
No 268
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.04 E-value=1e+02 Score=30.12 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCC
Q 041791 30 VGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 30 v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG 72 (421)
..+...+++.+.|..+..-.. .. .....+|-||.-||
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~---~~---~~~~~~d~vi~iGG 50 (256)
T PRK14075 14 EAKFLKEKISKEHEVVEFCEA---SA---SGKVTADLIIVVGG 50 (256)
T ss_pred HHHHHHHHHHHcCCeeEeecc---cc---cccCCCCEEEEECC
Confidence 445566778888876553321 11 12246899999999
No 269
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=43.97 E-value=1.1e+02 Score=28.98 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=36.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh---hhhhhhc--CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV---HMLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---~~l~~~l--~~~DGVIL~GG 72 (421)
|||+.... .+.+..-+-....+++.+.|..+++.....+. +.+...+ ..+||||+.+.
T Consensus 2 Igvi~p~~--~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 2 ISVLLPVV--ATEFYRRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred EEEEeCCC--cChhHHHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 56665332 34555556667788899999998887654321 1121212 26999999864
No 270
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=43.95 E-value=62 Score=35.46 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=35.3
Q ss_pred CCCCCcCCCCcEEEEEecccc--CcccchhhhhhHHHHHHHHCCCeEEEEcC
Q 041791 1 MGSSDLSMILPRVLIVSRRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPR 50 (421)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~ 50 (421)
||.++-.+.+|.|||+..++. ..+.-..-+++.--+.++++|+.++-.+.
T Consensus 33 ~G~~~~~~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t 84 (575)
T COG0129 33 TGLTDEDFGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGT 84 (575)
T ss_pred hCCChHHcCCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCceeEeCC
Confidence 466666668999999998874 34433334445556789999999987664
No 271
>PF08998 Epsilon_antitox: Bacterial epsilon antitoxin; InterPro: IPR015090 The epsilon antitoxin, produced by various prokaryotes, forms part of a post-segregational killing system, which is involved in the initiation of programmed cell death of plasmid-free cells. The protein is folded into a three-helix bundle that directly interacts with the zeta toxin, inactivating it []. ; GO: 0015643 toxin binding, 0009636 response to toxin, 0031342 negative regulation of cell killing; PDB: 1GVN_C 3Q8X_C.
Probab=43.82 E-value=26 Score=28.73 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHhhcChHHHhhHHHHHHHHHHHhHHHHHh
Q 041791 386 IIGKMSVGQLSDLISFYHMMGQICSEALEK 415 (421)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (421)
-|-+||.++|....+|+++|.+-...++++
T Consensus 56 nLFk~sl~eL~~v~~Yw~~mn~y~ksi~tK 85 (89)
T PF08998_consen 56 NLFKMSLEELEAVHEYWRSMNNYIKSITTK 85 (89)
T ss_dssp -GGGS-HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHhhHHHHHHHHHHHHHHHHHHHhccch
Confidence 478999999999999999999877666543
No 272
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=43.28 E-value=44 Score=34.42 Aligned_cols=85 Identities=22% Similarity=0.339 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcC-CcCEEEECC--CCCCCCCCccccccCCChhhHHHHHhhccCccccchhh
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFE-PIHGVLLCE--GEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEK 109 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGVIL~G--G~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~r 109 (421)
..++++.+.--.|++|.-+.+.++.....+ .+|||+++| |-+.| ++-..
T Consensus 215 ~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d---~~~~~------------------------- 266 (356)
T PF01070_consen 215 DDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLD---WGPPT------------------------- 266 (356)
T ss_dssp HHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSST---TS-BH-------------------------
T ss_pred HHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCc---ccccc-------------------------
Confidence 358888887778988876666655554433 799999996 43433 11110
Q ss_pred hHHHHHHHHHHHHcCCCEE---EEchhhHHH-HHHhCCccc
Q 041791 110 DTIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (421)
Q Consensus 110 d~~el~li~~ale~~iPiL---GIClG~QlL-ava~GG~v~ 146 (421)
...+.-++.+...++||+ ||..|.-++ +.++|++..
T Consensus 267 -~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v 306 (356)
T PF01070_consen 267 -IDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAV 306 (356)
T ss_dssp -HHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEE
T ss_pred -ccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeE
Confidence 112233455556689998 789999766 567888764
No 273
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.17 E-value=1.7e+02 Score=27.00 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=34.6
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChh---hhhhh-cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVH---MLLES-FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~-l~~~DGVIL~GG 72 (421)
||++... ..+.+..-+-....+.+...|..++++....+.+ .+... -..+||||+.+.
T Consensus 2 I~~i~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 2 IGVVVAD--LDNPFYSELLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred EEEEeCC--CCCchHHHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 5666532 2344545455556778889999988876554321 11111 137999999754
No 274
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.10 E-value=2.2e+02 Score=27.10 Aligned_cols=59 Identities=17% Similarity=0.002 Sum_probs=35.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh-----cCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----l~~~DGVIL~GG 72 (421)
.||++... ..+.+..-+-....+.+.++|..+++.....+.+...+. -.++||||+.+.
T Consensus 2 ~ig~i~~~--~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 2 NIIFVASD--LKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred eEEEEecc--cCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 46666532 234555555566678889999888776544333221111 137999999864
No 275
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=42.81 E-value=94 Score=28.50 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=43.9
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhhhh---hc--CCcCEEEECCCC-CCCCCCccccccCCChhhHHHHHhhccCcccc
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTGVHMLLE---SF--EPIHGVLLCEGE-DIDPSLYDAELSGFAPEELEEIRALHASDTAI 105 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~---~l--~~~DGVIL~GG~-didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~ 105 (421)
..+.+++...|..|++.....+..-.-+ .+ ..+|+++|..|- |+
T Consensus 69 ~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF------------------------------ 118 (160)
T TIGR00288 69 DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADF------------------------------ 118 (160)
T ss_pred HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhH------------------------------
Confidence 3457789999999987766555443333 33 578999988773 32
Q ss_pred chhhhHHHHHHHHHHHHcCCCEEEEc
Q 041791 106 DKEKDTIELRLAKLCLERNIPYLGIC 131 (421)
Q Consensus 106 d~~rd~~el~li~~ale~~iPiLGIC 131 (421)
..|+..+++.++-|.|+.
T Consensus 119 --------~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 119 --------LPVINKAKENGKETIVIG 136 (160)
T ss_pred --------HHHHHHHHHCCCEEEEEe
Confidence 256788888999999876
No 276
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=42.79 E-value=55 Score=32.13 Aligned_cols=64 Identities=6% Similarity=-0.077 Sum_probs=38.6
Q ss_pred CCCCcCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC----C---hhhhhhhcCCcCEEEECCCCC
Q 041791 2 GSSDLSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT----G---VHMLLESFEPIHGVLLCEGED 74 (421)
Q Consensus 2 ~~~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~----~---~~~l~~~l~~~DGVIL~GG~d 74 (421)
-.++.+..-.+|+|+ |+... .+...+.|++.|+.++.+|... + .+.....+..+|.||++....
T Consensus 10 ~~~~~~l~g~~IlvT-Rp~~q--------~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA 80 (266)
T PRK08811 10 TGAATADAAWTLISL-RPSGE--------HAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA 80 (266)
T ss_pred CCCCcCCCCCEEEEe-CCHHH--------HHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH
Confidence 344555555666554 44221 2345678999999999888621 1 112223456899999997643
No 277
>PLN02979 glycolate oxidase
Probab=41.98 E-value=96 Score=32.21 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcC-CcCEEEECCCC--CCCCCCccccccCCChhhHHHHHhhccCccccchhh
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFE-PIHGVLLCEGE--DIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEK 109 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGVIL~GG~--didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~r 109 (421)
..++||++.--.|+++--..+.+......+ ++|||+++|.+ ..|. .+ + .
T Consensus 213 ~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~-----~p----------------~--t----- 264 (366)
T PLN02979 213 KDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDY-----VP----------------A--T----- 264 (366)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCC-----ch----------------h--H-----
Confidence 468899988778999887666655544433 79999999843 3220 00 0 0
Q ss_pred hHHHHHHHHHHHHcCCCEE---EEchhhHHH-HHHhCCccc
Q 041791 110 DTIELRLAKLCLERNIPYL---GICRGSQVL-NVACGGTLY 146 (421)
Q Consensus 110 d~~el~li~~ale~~iPiL---GIClG~QlL-ava~GG~v~ 146 (421)
...+.-++.+...++||+ ||..|..++ +.++|+...
T Consensus 265 -~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV 304 (366)
T PLN02979 265 -ISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 304 (366)
T ss_pred -HHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEE
Confidence 001122233344568988 899999877 557787654
No 278
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=41.95 E-value=1.8e+02 Score=27.37 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=35.1
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC--Chh----hhhhhc-CCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT--GVH----MLLESF-EPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~----~l~~~l-~~~DGVIL~GG 72 (421)
+|||+... ..+.|+.-+.....+++..+|..+++..... +.+ .+...+ ..+||||+.+.
T Consensus 1 ~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 1 KLCVLYPH--LKDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred CeEEEcCC--CCCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 35666632 2355555555566678889999988775432 221 222222 37999999854
No 279
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=41.56 E-value=1.6e+02 Score=27.65 Aligned_cols=58 Identities=3% Similarity=0.046 Sum_probs=30.9
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHC-CCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSY-GAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
||++... . .+.+..-+.....+.+... |..+++.....+.+...+.+ .++||||+.+.
T Consensus 2 ig~~~~~-~-~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 65 (270)
T cd06308 2 IGFSQCN-L-ADPWRAAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPN 65 (270)
T ss_pred EEEEeeC-C-CCHHHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 5565522 1 2344444444555667775 77777665433332222222 27899999864
No 280
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.49 E-value=1.5e+02 Score=27.64 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=34.1
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
|||+... . .+.|..-+-....+++...|..+++.....+.+. +.... ..+||||+.+.
T Consensus 2 i~vi~~~-~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 2 IGLVFPD-L-DSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred eEEEECC-C-CCccHHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 5666532 2 3445555555667788889988877765433321 11122 26999998754
No 281
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=41.39 E-value=2.2e+02 Score=27.75 Aligned_cols=60 Identities=8% Similarity=-0.000 Sum_probs=36.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh---hhh--cCCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML---LES--FEPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l---~~~--l~~~DGVIL~GG 72 (421)
..||++... . .+.+..-+-....+.+.+.|..+++.....+.+.. .+. -..+||||+.+.
T Consensus 61 ~~Igvi~~~-~-~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 61 RTIGLVIPD-L-ENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred ceEEEEeCC-C-CCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578887643 1 23444545556667788899988877654333221 111 136999999764
No 282
>PF06223 Phage_tail_T: Minor tail protein T; InterPro: IPR009350 This family represents the minor tail protein T of Lambda-like viruses and their prophage. The minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerisation. The protein is essential for tail assembly but is not found in the mature virion [].
Probab=40.90 E-value=26 Score=29.74 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=20.1
Q ss_pred HHHHHhhcChHHHhhHHHHHHH
Q 041791 383 ARNIIGKMSVGQLSDLISFYHM 404 (421)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~ 404 (421)
=|+|++.||..++.|-..||+.
T Consensus 11 WR~MLa~MSstE~~eW~~ff~~ 32 (103)
T PF06223_consen 11 WRRMLAEMSSTEYGEWADFFRK 32 (103)
T ss_pred HHHHHHhcCHHHHHHHHHHHHh
Confidence 4899999999999999999974
No 283
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=40.73 E-value=1.9e+02 Score=28.10 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=35.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh---hc--CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE---SF--EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~---~l--~~~DGVIL~GG 72 (421)
-.|||+... ..+.|...+-....+.+.+.|..+++.....+.+...+ .+ ..+||||+.+.
T Consensus 60 ~~Igvv~~~--~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 60 TTVGVIIPD--ISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CEEEEEeCC--CCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 578888643 12445444555556677888998887655433322111 11 36999999753
No 284
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=40.60 E-value=31 Score=33.77 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCEEEEchhh
Q 041791 114 LRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~ 134 (421)
+..++.+...++|+|||=.|.
T Consensus 39 L~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 39 LQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred HHHHHHhcCCCCeEEEEeCCC
Confidence 455566666789999999886
No 285
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=40.55 E-value=87 Score=33.00 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=36.8
Q ss_pred EEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChh----hhhhhcCCcCEEEECCCCC
Q 041791 12 RVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVH----MLLESFEPIHGVLLCEGED 74 (421)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~----~l~~~l~~~DGVIL~GG~d 74 (421)
+|+|++-.+ .-.++..+.-..+..+++...|..+...... ++.+ .+...++.+|-||++||-.
T Consensus 2 ~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 2 KAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred EEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 466665443 2344444433334456788999987633322 2333 3444566899999999853
No 286
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=40.35 E-value=1.9e+02 Score=28.32 Aligned_cols=60 Identities=7% Similarity=0.038 Sum_probs=36.9
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----hc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----SF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGVIL~GG 72 (421)
..|+|+.... .+.+...+-....+++.+.|..+++.....+.+...+ .. ..+||||+.++
T Consensus 60 ~~i~vi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 60 KSIGLLATSS--EAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CeEEEEeCCC--CCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4677776432 2445555556667788889998877764433332211 11 26899999875
No 287
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=40.31 E-value=30 Score=29.70 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=32.2
Q ss_pred hhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCC
Q 041791 31 GEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSL 79 (421)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~ 79 (421)
.+..++.|++ |..+.+ +...+.+++.+.++++|+++..+++.+++..
T Consensus 8 ~~~~~~~l~~-~~~v~~-~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~ 54 (133)
T PF00389_consen 8 PDEEIERLEE-GFEVEF-CDSPSEEELAERLKDADAIIVGSGTPLTAEV 54 (133)
T ss_dssp SHHHHHHHHH-TSEEEE-ESSSSHHHHHHHHTTESEEEESTTSTBSHHH
T ss_pred CHHHHHHHHC-CceEEE-eCCCCHHHHHHHhCCCeEEEEcCCCCcCHHH
Confidence 4556677777 764444 4456677778888999999987775454433
No 288
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.95 E-value=32 Score=33.89 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCEEEEchhh
Q 041791 114 LRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~ 134 (421)
+..++.+...++|+|||=.|.
T Consensus 47 L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 47 VSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred HHHHHHhcCCCCcEEEEecCC
Confidence 455566556789999999885
No 289
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=39.65 E-value=96 Score=32.55 Aligned_cols=86 Identities=16% Similarity=0.292 Sum_probs=45.4
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHC--CCeEEEEcCC-CC---hhhhhhhc---CC--cCEEEEC-CCCC
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY--GAVPVIVPRV-TG---VHMLLESF---EP--IHGVLLC-EGED 74 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vivp~~-~~---~~~l~~~l---~~--~DGVIL~-GG~d 74 (421)
+....+|||++.++.. -+.|+ ++-+... ++...+.|.. .+ ...+...+ +. +|-|||. ||++
T Consensus 132 P~~p~~I~viTs~~gA--a~~D~-----~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 132 PFFPKRIGVITSPTGA--AIRDI-----LTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred CCCCCEEEEEeCCccH--HHHHH-----HHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 4445679999988641 11232 2333333 4566666642 12 22322222 22 6889998 6553
Q ss_pred CCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEE
Q 041791 75 IDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLG 129 (421)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLG 129 (421)
+ |+|- .++ +..+++...+..+||+-
T Consensus 205 ~--------------eDL~----------~Fn------~e~v~~ai~~~~~Pvis 229 (438)
T PRK00286 205 L--------------EDLW----------AFN------DEAVARAIAASRIPVIS 229 (438)
T ss_pred H--------------HHhh----------ccC------cHHHHHHHHcCCCCEEE
Confidence 2 2221 111 34677777788999874
No 290
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=39.52 E-value=1.6e+02 Score=27.63 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=33.1
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEc-CCCChhhhhhhc-----CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVP-RVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp-~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
||++... .+.|..-+....-+.+.+.|..+.++. ...+.+...+.+ .++||||+.+.
T Consensus 2 i~~v~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 2 IAVVTNG---ASPFWKIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred eEEEcCC---CcHHHHHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 5666532 244555555566677888999887763 322322111111 37999999864
No 291
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.46 E-value=2.1e+02 Score=26.59 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=29.6
Q ss_pred cccchhhhhhHHHHHHHHCCCeEEEEcCCCCh---hhhhhhc-C-CcCEEEECCC
Q 041791 23 KNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV---HMLLESF-E-PIHGVLLCEG 72 (421)
Q Consensus 23 ~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---~~l~~~l-~-~~DGVIL~GG 72 (421)
.+.+..-+.....+++...|..+++....... +.+.+.+ . .+||||+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 15 QNPFFIEVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 34455545555567788899887766543222 2222323 2 4999999854
No 292
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.33 E-value=1.8e+02 Score=28.21 Aligned_cols=59 Identities=5% Similarity=-0.041 Sum_probs=33.7
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHH--CCCeEEEEcCCCChh----hhhhh-cCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVS--YGAVPVIVPRVTGVH----MLLES-FEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~--~Ga~~vivp~~~~~~----~l~~~-l~~~DGVIL~GG 72 (421)
+|||+... ..+.|..-+.....+++.. .|..+++.+...+.+ .+... -.++||+|+.+.
T Consensus 1 ~Igviv~~--~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~ 66 (303)
T cd01539 1 KIGVFLYK--FDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLV 66 (303)
T ss_pred CeEEEeeC--CCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35665532 2344455555566677777 777777666544432 12222 237999999753
No 293
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.17 E-value=2.1e+02 Score=26.40 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=32.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh----hhhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML----LESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGVIL~GG 72 (421)
|+|+... . .+.+...+-...-++.++.|...++.....+.+.. .... ..+||||+.+.
T Consensus 2 I~vi~~~-~-~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 2 IGLVIND-L-TNPFFAELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred EEEEecC-C-CcchHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5565532 2 23344444445556788889887766543333221 1112 36899999864
No 294
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=38.38 E-value=1.9e+02 Score=27.01 Aligned_cols=58 Identities=9% Similarity=-0.073 Sum_probs=34.8
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh----hhh-cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML----LES-FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~-l~~~DGVIL~GG 72 (421)
|||+... ..+.+..-+-....+.++++|..++++....+.+.. ... -..+||||+.+.
T Consensus 2 igvi~p~--~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 2 IGLVVSD--LDGPFFGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred EEEEEcc--ccCcchHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 5555532 234555555566677888999998876544333321 111 137999999864
No 295
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=37.97 E-value=2.1e+02 Score=26.80 Aligned_cols=58 Identities=5% Similarity=0.052 Sum_probs=35.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh----hhhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML----LESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGVIL~GG 72 (421)
|||+... . .+.|..-+-....+++.+.|..+++.....+.+.. ...+ ..+||+|+.++
T Consensus 2 igvv~~~-~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 2 IGVITTY-I-SDYIFPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred eEEEeCC-c-cchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 6766642 2 24445555566678888999988776543333211 1111 37999999765
No 296
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=37.74 E-value=1e+02 Score=27.56 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=36.1
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCC-----eEEEEcCCCChhhh-hhh--cCCcCEEEECC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA-----VPVIVPRVTGVHML-LES--FEPIHGVLLCE 71 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-----~~vivp~~~~~~~l-~~~--l~~~DGVIL~G 71 (421)
|..++|+|+..+-. ...++-+-+.-++.+..+|+ ..+.||-..+.... ... -.++||||..|
T Consensus 1 ~~~~ri~IV~s~~n--~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG 70 (144)
T PF00885_consen 1 MSGLRIAIVVSRFN--EEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALG 70 (144)
T ss_dssp -TTEEEEEEEESTT--HHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEE
T ss_pred CCCCEEEEEEEecc--HHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEec
Confidence 45678999885521 22344455566788999997 44556643332111 111 23599999887
No 297
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.73 E-value=1.8e+02 Score=27.27 Aligned_cols=49 Identities=14% Similarity=0.014 Sum_probs=30.8
Q ss_pred ccchhhhhhHHHHHHHHCCCeEEEEcCCC-Chhhhhhh-----cCCcCEEEECCC
Q 041791 24 NKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~-----l~~~DGVIL~GG 72 (421)
+.+..-+.....+++.+.|..+++..... +.+...+. -..+||||+.+.
T Consensus 12 ~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 12 DPFWTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred CcHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 44555555666778888998888776543 43322211 136999999864
No 298
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=37.27 E-value=1.7e+02 Score=27.09 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=29.5
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCC
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGE 73 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~ 73 (421)
-.+.++..|+.++...++ +.+.+...|.++|.|+++-+.
T Consensus 36 ~~~~l~~~g~~vv~~d~~-~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 36 RAQQLQALGAEVVEADYD-DPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHTTTEEEES-TT--HHHHHHHHTTCSEEEEESSC
T ss_pred hhhhhhcccceEeecccC-CHHHHHHHHcCCceEEeecCc
Confidence 355678899987765543 578888899999999999775
No 299
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.09 E-value=2.6e+02 Score=26.04 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=35.2
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
|||+... . .+.+...+-....+++.+.|..+.+.....+.+...+.+ ..+||||+.+-
T Consensus 2 Ig~i~~~-~-~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 2 IGLVVPD-I-ANPFFAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred EEEEeCC-C-CCCcHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 5666532 2 244555566667788999999887775433332222211 36999999864
No 300
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.88 E-value=1.8e+02 Score=27.29 Aligned_cols=55 Identities=15% Similarity=-0.062 Sum_probs=31.8
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHH-CCCeEEEEcCCCChhhhhhhc--CCcCEEEECC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVS-YGAVPVIVPRVTGVHMLLESF--EPIHGVLLCE 71 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~-~Ga~~vivp~~~~~~~l~~~l--~~~DGVIL~G 71 (421)
|||++.. . .+.+...+-....+++.+ .|...++...+ . ....+.| ..+||+|+.+
T Consensus 1 ~ig~i~~-~--~~~~~~~~~~gi~~~~~~~~g~~~~~~~~~-~-~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 1 RVALLVE-T--SSSYGRGVLRGIARYAREHGPWSIYLEPRG-L-QEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred CeEEEec-c--cchhhHHHHHHHHHHHHhcCCeEEEEeccc-c-hhhhhhccccccceEEEEC
Confidence 4677774 2 255666666677788888 55555543322 1 2222222 2689999974
No 301
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.46 E-value=1.4e+02 Score=29.65 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=27.7
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-h--hhh-hhcCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-H--MLL-ESFEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~--~l~-~~l~~~DGVIL~GG 72 (421)
+|||+.++..... .. +....++|+ ..|..+++-...... . ... ... .+|-+|.-||
T Consensus 2 ~i~iv~~~~~~~~--~~-~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGG 61 (271)
T PRK01185 2 KVAFVIRKDCKRC--IK-IAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGG 61 (271)
T ss_pred EEEEEecCCCHHH--HH-HHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcC
Confidence 3889988643211 11 223345666 568766543211100 0 000 111 5799999999
No 302
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=36.42 E-value=2.6e+02 Score=25.86 Aligned_cols=58 Identities=7% Similarity=-0.050 Sum_probs=34.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-Chh---hhhhhc--CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVH---MLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~---~l~~~l--~~~DGVIL~GG 72 (421)
|||+... ..+.+..-+-....+.+.+.|..+++..... +.+ .+.+.+ ..+||||+.+.
T Consensus 2 i~vi~~~--~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 2 IGVVTTD--LALHGPSSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred EEEEeCC--CCcccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5666632 2244555555666778888998887765432 211 111111 36999999764
No 303
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=36.30 E-value=2.4e+02 Score=25.18 Aligned_cols=60 Identities=7% Similarity=-0.040 Sum_probs=31.7
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHH--CCCeEEEEcCCCChh----hhhhhc-CCcCEEEECCCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVS--YGAVPVIVPRVTGVH----MLLESF-EPIHGVLLCEGE 73 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~--~Ga~~vivp~~~~~~----~l~~~l-~~~DGVIL~GG~ 73 (421)
||++..... .+.+..-+.....+++.+ .|...+++....+.+ .+.... +.+||||+++..
T Consensus 2 Ig~i~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~ 68 (269)
T cd01391 2 IGVLLPLSG-SAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSS 68 (269)
T ss_pred ceEEeecCC-CcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 555554331 223333344455566777 777777665443321 111222 269999998764
No 304
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=35.21 E-value=2.3e+02 Score=27.73 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=34.3
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEEC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLC 70 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~ 70 (421)
+|+|+.-..+......=.-+...+++|++.|..++.+....+.-.....+..+|.|+..
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~ 60 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNV 60 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEe
Confidence 47777755443333222344556789999999998886543321212233568877654
No 305
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=34.66 E-value=2.2e+02 Score=26.46 Aligned_cols=57 Identities=11% Similarity=0.010 Sum_probs=33.2
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc--CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l--~~~DGVIL~GG 72 (421)
|||+... . .+.|..-+-....+++.+.|..+++.... +.....+.+ ..+||||+.+.
T Consensus 2 igvv~~~-~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 2 IGLIWPS-V-SRVALTELVTGINQAISKNGYNMNVSITP-SLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred EEEEecC-C-CchhHHHHHHHHHHHHHHcCCEEEEEecc-cHHHHHHHHHHcCcCEEEEeCC
Confidence 5666643 2 24444445455667788899887776543 222222222 26999999864
No 306
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=34.14 E-value=73 Score=27.66 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=37.3
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC------------------ChhhhhhhcCCcCEEEEC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT------------------GVHMLLESFEPIHGVLLC 70 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~------------------~~~~l~~~l~~~DGVIL~ 70 (421)
+|+|+.. +.+++..+..+.++..+.+.+.|+.+.++.... +.+.+.+.+...|+||+.
T Consensus 2 kilii~g-S~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~ 77 (152)
T PF03358_consen 2 KILIING-SPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA 77 (152)
T ss_dssp EEEEEES-SSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE
T ss_pred EEEEEEC-cCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe
Confidence 3455532 233445556777888888999998887775432 123344566679999986
No 307
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=34.01 E-value=2.3e+02 Score=27.60 Aligned_cols=62 Identities=11% Similarity=-0.008 Sum_probs=35.2
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC--hhhhh-hh-cCCcCEEEECCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG--VHMLL-ES-FEPIHGVLLCEGE 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~~l~-~~-l~~~DGVIL~GG~ 73 (421)
.+++|+.++.+.++...... ....+.+.+.|..+.+...... ...+. +. -+.+|.||+.||-
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGD 67 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPL-REVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGD 67 (293)
T ss_pred ceEEEEECCCccchhhHHHH-HHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCC
Confidence 47889999865433322222 2345678888987665543221 11111 11 1357899999983
No 308
>PRK03670 competence damage-inducible protein A; Provisional
Probab=33.97 E-value=1.5e+02 Score=29.08 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=33.9
Q ss_pred EEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhh----hcC-CcCEEEECCCCC
Q 041791 12 RVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLE----SFE-PIHGVLLCEGED 74 (421)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~----~l~-~~DGVIL~GG~d 74 (421)
+++|++-.+ .-.++..+.-.....+++...|..+..+... ++.+.+.+ .+. .+|-||++||-.
T Consensus 2 ~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 2 FAEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred EEEEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 345554333 2233333333334455688999977644332 33443333 334 479999999853
No 309
>PRK09701 D-allose transporter subunit; Provisional
Probab=33.11 E-value=3.1e+02 Score=26.77 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=35.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE--cCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV--PRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv--p~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
-.||++.... .+.|..-+...--+.+.+.|..+.++ +...+.+. +...+ .++|||||.+.
T Consensus 25 ~~Igvi~~~~--~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKTL--SNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCCC--CCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4788887442 34555555556667788889888766 32222221 22222 36999999865
No 310
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=32.99 E-value=47 Score=29.06 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=30.4
Q ss_pred hhhhhhHHHHHHHHCCCeEEEEcC-CCChhhhhh----hcCCcCEEEECCCCCC
Q 041791 27 VDFVGEYHLDLIVSYGAVPVIVPR-VTGVHMLLE----SFEPIHGVLLCEGEDI 75 (421)
Q Consensus 27 ~~~v~~~yl~~l~~~Ga~~vivp~-~~~~~~l~~----~l~~~DGVIL~GG~di 75 (421)
.+.-.....+++.++|+.++.... .++.+.+.+ .++..|-||.+||..+
T Consensus 15 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~ 68 (144)
T PF00994_consen 15 RDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGP 68 (144)
T ss_dssp EBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSS
T ss_pred EEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCc
Confidence 343344455678889997763221 234544444 3457899999999754
No 311
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=32.44 E-value=60 Score=29.01 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC---CChhhhhhhc
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV---TGVHMLLESF 61 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~---~~~~~l~~~l 61 (421)
+.+|+||||+-.+.....-... --+||..+||.++.+... .+.+++.+.|
T Consensus 89 ~~k~vIgvVTK~DLaed~dI~~----~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 89 GVKKVIGVVTKADLAEDADISL----VKRWLREAGAEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred cccceEEEEecccccchHhHHH----HHHHHHHcCCcceEEEeccCcccHHHHHHHH
Confidence 4468999999776532221222 246899999999865432 2344544443
No 312
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.13 E-value=1.2e+02 Score=28.26 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=35.3
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----hc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----SF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGVIL~GG 72 (421)
||++.... ..+.|...+-....+++...|..+++.+...+.+.... .. ..+||||+.+.
T Consensus 2 ig~v~~~~-~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 65 (269)
T cd06288 2 IGLISDEI-ATTPFAVEIILGAQDAAREHGYLLLVVNTGGDDELEAEAVEALLDHRVDGIIYATM 65 (269)
T ss_pred eEEEeCCC-CCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 66766432 12445555555666778889998877765444322111 11 26899999864
No 313
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.79 E-value=2.4e+02 Score=26.79 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=31.9
Q ss_pred cccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCC
Q 041791 23 KNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 23 ~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG 72 (421)
.+.+..-+-....+.+.+.|..+++.+.....+.+. -..+||||+.+.
T Consensus 18 ~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~l~--~~~vdgiIi~~~ 65 (269)
T cd06287 18 RLGFMMEVAAAAAESALERGLALCLVPPHEADSPLD--ALDIDGAILVEP 65 (269)
T ss_pred cCccHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhh--ccCcCeEEEecC
Confidence 345555565667788999999998887643222222 237999999754
No 314
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.70 E-value=66 Score=28.69 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=11.3
Q ss_pred cCCcCEEEECCCCC
Q 041791 61 FEPIHGVLLCEGED 74 (421)
Q Consensus 61 l~~~DGVIL~GG~d 74 (421)
++++|.|+|-||-.
T Consensus 83 ~n~aDvvVLlGGLa 96 (154)
T COG4090 83 LNSADVVVLLGGLA 96 (154)
T ss_pred cccccEEEEEcccc
Confidence 45699999999953
No 315
>TIGR01715 phage_lam_T phage tail assembly protein T. This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion.
Probab=31.46 E-value=43 Score=28.24 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.6
Q ss_pred HHHHhhcChHHHhhHHHHHHH
Q 041791 384 RNIIGKMSVGQLSDLISFYHM 404 (421)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~ 404 (421)
|+|++.||..++.|-..||..
T Consensus 7 R~mLa~MSstEy~dW~~~f~~ 27 (100)
T TIGR01715 7 RAMLAGMSSTEYGDWARFYRT 27 (100)
T ss_pred HHHHHhccHHHHHHHHHHHhc
Confidence 899999999999999999974
No 316
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=31.13 E-value=1.1e+02 Score=31.93 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=35.5
Q ss_pred CcCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCC-eEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCC
Q 041791 5 DLSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA-VPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDP 77 (421)
Q Consensus 5 ~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp 77 (421)
.+++.+++|++.... .....+.+...|. .++..+...+.+++.+.+.++|++++.+...++.
T Consensus 5 ~~~~~~~~ili~~~~-----------~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 67 (409)
T PRK11790 5 SLPKDKIKFLLLEGV-----------HQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTE 67 (409)
T ss_pred CCCCCCeEEEEECCC-----------CHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCH
Confidence 345556677665321 2334556666676 4444443334556666778899987765544443
No 317
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.64 E-value=2.9e+02 Score=25.87 Aligned_cols=58 Identities=3% Similarity=-0.071 Sum_probs=31.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHC-----CCeEEEEcCCCChhhh---hh-hc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSY-----GAVPVIVPRVTGVHML---LE-SF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~-----Ga~~vivp~~~~~~~l---~~-~l-~~~DGVIL~GG 72 (421)
||++... ..+.|...+-...-+...++ |...++.....+.+.. .+ .. .++||||+.+.
T Consensus 2 Ig~i~~~--~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~ 69 (274)
T cd06311 2 IGVSIPA--ADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPF 69 (274)
T ss_pred eeeeccC--CCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5555532 23455555555555666665 5566655543333221 22 33 26999999854
No 318
>PRK00549 competence damage-inducible protein A; Provisional
Probab=30.43 E-value=1.7e+02 Score=30.82 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=35.6
Q ss_pred EEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcC-CCChhhh----hhhcCCcCEEEECCCCC
Q 041791 12 RVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPR-VTGVHML----LESFEPIHGVLLCEGED 74 (421)
Q Consensus 12 ~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~-~~~~~~l----~~~l~~~DGVIL~GG~d 74 (421)
+++|++-.+ .-.+...+.-.....+++...|..+..+.. .++.+.+ ...++.+|-||++||-.
T Consensus 2 ~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlG 70 (414)
T PRK00549 2 KAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLG 70 (414)
T ss_pred EEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCC
Confidence 455655433 223444443333445578899987753322 2333433 33456789999999853
No 319
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=30.30 E-value=15 Score=25.80 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.0
Q ss_pred CEEEEchhhHHHHHHhC
Q 041791 126 PYLGICRGSQVLNVACG 142 (421)
Q Consensus 126 PiLGIClG~QlLava~G 142 (421)
-.-|.|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 35688999999976543
No 320
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=28.99 E-value=1.3e+02 Score=29.12 Aligned_cols=57 Identities=28% Similarity=0.399 Sum_probs=37.8
Q ss_pred HHHHHHHCCCeEE-EEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHH
Q 041791 34 HLDLIVSYGAVPV-IVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIR 96 (421)
Q Consensus 34 yl~~l~~~Ga~~v-ivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~ 96 (421)
-++.+++.|+.+= .+...+..+.+...++.+|.|++..- +|..=| +.|.++-++.||
T Consensus 101 ~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsV---nPGfgG---Q~Fi~~~l~Ki~ 158 (220)
T COG0036 101 TIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSV---NPGFGG---QKFIPEVLEKIR 158 (220)
T ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeE---CCCCcc---cccCHHHHHHHH
Confidence 4678888999884 45556677888888999999998753 232112 234556666554
No 321
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=28.71 E-value=2.2e+02 Score=28.01 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 041791 114 LRLAKLCLERNIPYLGIC 131 (421)
Q Consensus 114 l~li~~ale~~iPiLGIC 131 (421)
...+++|..-+||+.|+|
T Consensus 131 ~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 131 HQAIREASYVNIPVIALC 148 (249)
T ss_pred hHHHHHHHHhCCCEEEEe
Confidence 467788889999999999
No 322
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=28.25 E-value=3e+02 Score=24.71 Aligned_cols=61 Identities=16% Similarity=0.067 Sum_probs=33.9
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCe-----EEEEcCCCChhhh-hhhc--CCcCEEEECC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV-----PVIVPRVTGVHML-LESF--EPIHGVLLCE 71 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-----~vivp~~~~~~~l-~~~l--~~~DGVIL~G 71 (421)
...+|+|+..+- ....++-+-+.-++.+.++|+. ++.||-..+.... ...+ .++||||-.|
T Consensus 6 ~~~ri~IV~s~f--n~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG 74 (141)
T PLN02404 6 EGLRFGVVVARF--NEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIG 74 (141)
T ss_pred CCCEEEEEEecC--cHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 346888887542 1233444555667888999973 3344532221111 1122 3699998887
No 323
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.68 E-value=3e+02 Score=26.04 Aligned_cols=49 Identities=2% Similarity=-0.257 Sum_probs=30.7
Q ss_pred ccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----hc-CCcCEEEECCC
Q 041791 24 NKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----SF-EPIHGVLLCEG 72 (421)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGVIL~GG 72 (421)
+.|...+.....+++...|..+++.....+.+...+ .+ .++||||+.+.
T Consensus 11 ~~f~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~ 64 (272)
T cd06313 11 ATWCAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPL 64 (272)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 445555656666778889998887755434332222 11 36899999753
No 324
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.54 E-value=1.5e+02 Score=27.62 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=35.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh---h--cCCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE---S--FEPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~---~--l~~~DGVIL~GG 72 (421)
||++... . .+.+..-+-+...+.+.+.|..+++.....+.+...+ . -..+||||+.+-
T Consensus 2 Ig~i~p~-~-~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 2 VGLIVAD-I-RNPFFTAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred EEEEecc-c-ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5666532 2 2344444555667788899999887765544332211 1 126999999864
No 325
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=27.33 E-value=97 Score=32.12 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 041791 114 LRLAKLCLERNIPYLGIC 131 (421)
Q Consensus 114 l~li~~ale~~iPiLGIC 131 (421)
..+++.|.+.++|+++||
T Consensus 306 igVA~~Akk~~vPvIaia 323 (378)
T COG1929 306 IGVAKLAKKYGVPVIAIA 323 (378)
T ss_pred hHHHHhhhhhCCCEEEEe
Confidence 367778888899999999
No 326
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.27 E-value=3.9e+02 Score=26.28 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=35.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC--Chhhhhh-h-cCCcCEEEECCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT--GVHMLLE-S-FEPIHGVLLCEGE 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~-~-l~~~DGVIL~GG~ 73 (421)
.+++|+-+|.+-.++..... +.-++.+.+.|....++.... +...+.+ . .+.+|.||+.||-
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~-~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGD 74 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAA-ERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGD 74 (306)
T ss_pred ceEEEEECCCCCCCcHHHHH-HHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 47888888876443322222 233567888998765443222 1222221 1 2467999999993
No 327
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=26.76 E-value=3.4e+02 Score=26.08 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=27.3
Q ss_pred ccchhhhhhHHHHHHHHCCCeEEEE--cCCCChhhhh---hhc--CCcCEEEECCC
Q 041791 24 NKFVDFVGEYHLDLIVSYGAVPVIV--PRVTGVHMLL---ESF--EPIHGVLLCEG 72 (421)
Q Consensus 24 ~~~~~~v~~~yl~~l~~~Ga~~viv--p~~~~~~~l~---~~l--~~~DGVIL~GG 72 (421)
+.|...+-....+...+.|...+++ +...+.+... +.+ .++||||+.+.
T Consensus 10 ~~f~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~ 65 (302)
T TIGR02637 10 NPFFEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN 65 (302)
T ss_pred CHHHHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4555556666677888899544433 2222322211 111 37999999753
No 328
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=26.34 E-value=2.9e+02 Score=29.17 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCEEE
Q 041791 114 LRLAKLCLERNIPYLG 129 (421)
Q Consensus 114 l~li~~ale~~iPiLG 129 (421)
..+++...+..+||+-
T Consensus 209 e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 209 EKVARAIFLSKIPIIS 224 (432)
T ss_pred HHHHHHHHcCCCCEEE
Confidence 4667777788899873
No 329
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=26.22 E-value=3.9e+02 Score=26.89 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=34.9
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEE-EcCCCChh----hhhhhc-CCcCEEEECC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVI-VPRVTGVH----MLLESF-EPIHGVLLCE 71 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vi-vp~~~~~~----~l~~~l-~~~DGVIL~G 71 (421)
.+|+++... ..+.|..-+....-++.+++|..+++ .|...+.+ .+...+ .++|||++.+
T Consensus 24 ~~i~~v~k~--~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 24 ERIAFIPKL--VGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA 88 (336)
T ss_pred cEEEEEECC--CCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 356666532 23455555666777888899988775 34332322 122222 3799999974
No 330
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=26.06 E-value=2.7e+02 Score=23.99 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=43.9
Q ss_pred hhHHHHHHHHCCCeEEEEcCC--------CChhhhhhhc-----CCcCEEEECCCC-CCCCCCccccccCCChhhHHHHH
Q 041791 31 GEYHLDLIVSYGAVPVIVPRV--------TGVHMLLESF-----EPIHGVLLCEGE-DIDPSLYDAELSGFAPEELEEIR 96 (421)
Q Consensus 31 ~~~yl~~l~~~Ga~~vivp~~--------~~~~~l~~~l-----~~~DGVIL~GG~-didp~~y~~~~~~~~~e~~~~i~ 96 (421)
...+.+++...|..++..+.. .+..-..+.+ ..+|.++|..|- |+
T Consensus 54 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df--------------------- 112 (149)
T cd06167 54 QRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDF--------------------- 112 (149)
T ss_pred HHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccH---------------------
Confidence 356888999999999988742 2222222211 258888888773 21
Q ss_pred hhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchh
Q 041791 97 ALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRG 133 (421)
Q Consensus 97 ~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG 133 (421)
..+++.+.+.++.+..+|..
T Consensus 113 -----------------~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 113 -----------------VPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred -----------------HHHHHHHHHcCCEEEEEccC
Confidence 24567778889999999976
No 331
>PRK09932 glycerate kinase II; Provisional
Probab=25.75 E-value=1e+02 Score=32.20 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 041791 114 LRLAKLCLERNIPYLGIC 131 (421)
Q Consensus 114 l~li~~ale~~iPiLGIC 131 (421)
..+++.+.+.++|+..||
T Consensus 306 ~~Va~~A~~~~~Pvi~i~ 323 (381)
T PRK09932 306 LGVASVAKQFNVPVIGIA 323 (381)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 367788888999999999
No 332
>PRK06852 aldolase; Validated
Probab=25.28 E-value=2.3e+02 Score=28.63 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCeEEEEcCC-----CChhhhhhhcCCc--CEEEECCCCC
Q 041791 33 YHLDLIVSYGAVPVIVPRV-----TGVHMLLESFEPI--HGVLLCEGED 74 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~-----~~~~~l~~~l~~~--DGVIL~GG~d 74 (421)
+..+.-..+||-.|=++|. .+.+.+.+..+.+ =.||+.||+.
T Consensus 192 ~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k 240 (304)
T PRK06852 192 GAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSS 240 (304)
T ss_pred HHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCC
Confidence 3456777899999988887 4456666655544 4689999984
No 333
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=25.01 E-value=1.3e+02 Score=28.72 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=31.3
Q ss_pred HHHHHHHHCCCeEE-EEcCCCChhhhhhhcCCcCEEEECCC
Q 041791 33 YHLDLIVSYGAVPV-IVPRVTGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 33 ~yl~~l~~~Ga~~v-ivp~~~~~~~l~~~l~~~DGVIL~GG 72 (421)
..++.++++|+.+- .+...+..+.+...++.+|.|++.+.
T Consensus 97 ~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV 137 (220)
T PRK08883 97 RTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSV 137 (220)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEe
Confidence 46788999998875 44455677888888999999999753
No 334
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=24.94 E-value=1e+02 Score=32.11 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 041791 114 LRLAKLCLERNIPYLGIC 131 (421)
Q Consensus 114 l~li~~ale~~iPiLGIC 131 (421)
..+.+.+.+.++|+..||
T Consensus 305 ~~Va~~A~~~~vPviai~ 322 (375)
T TIGR00045 305 VGVAKRAKKYGVPVIAIA 322 (375)
T ss_pred HHHHHHHHHhCCeEEEEe
Confidence 367788888999999999
No 335
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=24.37 E-value=2.9e+02 Score=23.45 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=35.0
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC--Chhhhhh--hcCCc-CEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT--GVHMLLE--SFEPI-HGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~--~l~~~-DGVIL~GG 72 (421)
+++|+-++.+..++.. + ....+.+...|....++.... ....+.. .++.. |.||+.||
T Consensus 1 k~~vi~Np~sG~~~~~--~-~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GG 63 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--W-KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGG 63 (130)
T ss_dssp SEEEEEETTSTTSHHH--H-HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEES
T ss_pred CEEEEECCCCCCCchh--H-HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcC
Confidence 3677777766444433 2 566778888887665544322 2223322 34555 89999999
No 336
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=23.89 E-value=1.8e+02 Score=27.40 Aligned_cols=60 Identities=12% Similarity=-0.139 Sum_probs=34.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhh----hc-CCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLE----SF-EPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~----~l-~~~DGVIL~GG 72 (421)
+|+|+-....-.+.|...+-....+.+.+.|..+++.... +.+...+ .. .++||||+.+.
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~~ 65 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGVEVKYVESV-EDADYEPNLRQLAAQGYDLIFGVGF 65 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCceEEEEecC-CHHHHHHHHHHHHHcCCCEEEECCc
Confidence 4566554322234555555556667788889987776533 3222222 11 25899999854
No 337
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=23.58 E-value=2.5e+02 Score=27.25 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=35.6
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
..||++... . .+.+..-+-....+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 60 ~~Ig~i~~~-~-~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~ 124 (311)
T TIGR02405 60 KVVAVIVSR-L-DSPSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGF 124 (311)
T ss_pred CEEEEEeCC-c-ccccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 578888742 1 233333344555667888999988776544433222111 25899999864
No 338
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=23.44 E-value=3.4e+02 Score=25.41 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=31.6
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEc----CCCChh----hhhhhcCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVP----RVTGVH----MLLESFEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp----~~~~~~----~l~~~l~~~DGVIL~GG 72 (421)
+||++... ..+.+..-+-....+++.+.|...+.+. ...+.+ .+....+++||||+.+.
T Consensus 1 ~ig~v~~~--~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vdgiii~~~ 67 (275)
T cd06307 1 RLGFLLPK--GSNAFYRELAAALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGARSDGVALVAP 67 (275)
T ss_pred CeEEEeCC--CCChHHHHHHHHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHhcCCEEEEeCC
Confidence 35665532 2345556666667777888876444332 111222 12222227999999754
No 339
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=23.01 E-value=2.1e+02 Score=26.61 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=34.9
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh----hhc-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL----ESF-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~----~~l-~~~DGVIL~GG 72 (421)
|||+... ..+.+...+-...-+++.+.|..++++....+.+... ... ..+||||+.+.
T Consensus 2 igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 2 IGMLVTT--STNPFFAEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred EEEEeCC--CCcchHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 5666532 1244555555666677888999888776544443221 111 36999999875
No 340
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=22.97 E-value=3.5e+02 Score=27.70 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcC-CcCEEEECC
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFE-PIHGVLLCE 71 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGVIL~G 71 (421)
..++++.+..-.|+++-.....++.....+ ++|+|+++|
T Consensus 203 ~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 203 DDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred HHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEEC
Confidence 468889887778888887666665554444 799999997
No 341
>PRK09739 hypothetical protein; Provisional
Probab=22.88 E-value=2.3e+02 Score=26.04 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=25.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV 48 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv 48 (421)
.+|+|+.... +.+.....+.+.+++.+++.|..+.++
T Consensus 4 mkiliI~~sp-~~~s~s~~l~~~~~~~~~~~g~~v~~~ 40 (199)
T PRK09739 4 MRIYLVWAHP-RHDSLTAKVAEAIHQRAQERGHQVEEL 40 (199)
T ss_pred ceEEEEEcCC-CCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3566665432 235666778888899999888776655
No 342
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=22.82 E-value=6e+02 Score=25.05 Aligned_cols=63 Identities=5% Similarity=-0.059 Sum_probs=34.8
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCC-eEEEEcCCCChh----hhhhhc-CCcCEEEECCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA-VPVIVPRVTGVH----MLLESF-EPIHGVLLCEG 72 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~~~~----~l~~~l-~~~DGVIL~GG 72 (421)
....+||++... ..+.|..-+.....+++.+.|. ..++.....+.+ .+.... ..+||||+++.
T Consensus 22 ~~~~~Igvv~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 90 (330)
T PRK15395 22 AADTRIGVTIYK--YDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 90 (330)
T ss_pred cCCceEEEEEec--CcchHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 344678877642 2345555555566677788865 444434322221 222222 27999999865
No 343
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=22.33 E-value=2.5e+02 Score=29.30 Aligned_cols=38 Identities=11% Similarity=0.273 Sum_probs=28.2
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhhhhhcC-CcCEEEECC
Q 041791 34 HLDLIVSYGAVPVIVPRVTGVHMLLESFE-PIHGVLLCE 71 (421)
Q Consensus 34 yl~~l~~~Ga~~vivp~~~~~~~l~~~l~-~~DGVIL~G 71 (421)
.+++|++.--.|+++.-+.+.+......+ ++|||+++|
T Consensus 236 di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 236 DLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred HHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECC
Confidence 48888887667888877666665554444 799999997
No 344
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=22.07 E-value=59 Score=27.42 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=33.9
Q ss_pred hHHHHHhhHHHHHHHHH----HHhhcChHHHhhHHHHHHHHHHHhHHHHHh
Q 041791 369 YIERLKMNEERERVARN----IIGKMSVGQLSDLISFYHMMGQICSEALEK 415 (421)
Q Consensus 369 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (421)
|+++|--+-..+.++-. |+..--.+-+.+.++||..+|-|..+|.++
T Consensus 7 ~L~~iP~~~~s~~~~~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~ 57 (99)
T PF04659_consen 7 YLETIPEDYVSEIVVFEWLEFLVERVGHNNAADALDYYESIGWISEEVREQ 57 (99)
T ss_pred hhhcCCcchHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHH
Confidence 44444444444444444 456667888999999999999999999875
No 345
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.01 E-value=2.3e+02 Score=23.99 Aligned_cols=90 Identities=23% Similarity=0.184 Sum_probs=43.7
Q ss_pred hHHHHHHHHCCCeEEEEcCCCC-------hhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccc
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTG-------VHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTA 104 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~-------~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~ 104 (421)
..-++.|.+.|..++.|....+ ...+.+.-+.+|-+++.-.++.- +|-++++.++......
T Consensus 17 ~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~------------~~~v~~~~~~g~~~v~ 84 (116)
T PF13380_consen 17 YRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKV------------PEIVDEAAALGVKAVW 84 (116)
T ss_dssp HHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHH------------HHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHH------------HHHHHHHHHcCCCEEE
Confidence 3346677779987777654321 12233212467887777654211 2333444433322222
Q ss_pred cchhhhHHHHHHHHHHHHcCCCEE-EEchhhH
Q 041791 105 IDKEKDTIELRLAKLCLERNIPYL-GICRGSQ 135 (421)
Q Consensus 105 ~d~~rd~~el~li~~ale~~iPiL-GIClG~Q 135 (421)
+... ..+.++++.+.+.+++++ .=|.|+.
T Consensus 85 ~~~g--~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 85 LQPG--AESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp E-TT--S--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred EEcc--hHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 2222 334577888888999999 5688874
No 346
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=21.99 E-value=3.1e+02 Score=26.35 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=38.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcC------CCCh------hhhhhhcCCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPR------VTGV------HMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~------~~~~------~~l~~~l~~~DGVIL~GG 72 (421)
++|+++.. +.+++.+...+.+...+.+...|+.+.++.. +.+. ..+.+.++..|||||.--
T Consensus 27 ~kI~~I~G-SlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TP 99 (219)
T TIGR02690 27 PRILLLYG-SLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSP 99 (219)
T ss_pred CEEEEEEC-CCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCC
Confidence 55555553 3556666677777777778877888866632 1111 224455667899998743
No 347
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=21.20 E-value=3.1e+02 Score=26.49 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=36.9
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh----hhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML----LESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGVIL~GG 72 (421)
.+||++.... .+.+...+-....+.+.+.|...++.....+.+.. ...+ ..+||||+.+.
T Consensus 57 ~~Igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 57 RTIGMLITAS--TNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred CeEEEEeCCC--CCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788776432 24455555566677888899887776544333221 1112 26999999865
No 348
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.04 E-value=2.5e+02 Score=26.49 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCeEE-EEcCCCChhhhhhhcCCcCEEEECCC
Q 041791 33 YHLDLIVSYGAVPV-IVPRVTGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 33 ~yl~~l~~~Ga~~v-ivp~~~~~~~l~~~l~~~DGVIL~GG 72 (421)
..++.++++|..+= .+...+..+.+...++.+|.|++..-
T Consensus 96 ~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV 136 (201)
T PF00834_consen 96 ETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSV 136 (201)
T ss_dssp HHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS
T ss_pred HHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEe
Confidence 35788899999874 44445677888888999999998763
No 349
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=21.01 E-value=7.9e+02 Score=24.34 Aligned_cols=61 Identities=8% Similarity=-0.060 Sum_probs=36.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC--CChhhhhhhc-----CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV--TGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
...||++... ..+.+..-+.....+++...|..+++.... .+.+...+.+ .++||||+.+.
T Consensus 46 t~~Igvv~p~--~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~ 113 (343)
T PRK10936 46 AWKLCALYPH--LKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAV 113 (343)
T ss_pred CeEEEEEecC--CCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 3578877643 224455555556677888899888776432 2222222222 36899999754
No 350
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=20.73 E-value=4.4e+02 Score=21.03 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=27.5
Q ss_pred eEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccCC
Q 041791 218 FVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRN 258 (421)
Q Consensus 218 ~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~ 258 (421)
.++.+++.||.|......+ +.+..+.|+|+....
T Consensus 21 ~~~~~~s~~g~V~V~v~g~-------g~v~~i~i~~~~~~~ 54 (93)
T PF02575_consen 21 IEVTGTSGDGLVTVTVNGN-------GEVVDIEIDPSALRP 54 (93)
T ss_dssp SEEEEEETCCTEEEEEETT-------S-EEEEEE-GGGGCT
T ss_pred CEEEEEECCCEEEEEEecC-------ceEEEEEEehHhhcc
Confidence 4678889999999999886 789999999998863
No 351
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=20.55 E-value=2.8e+02 Score=25.77 Aligned_cols=58 Identities=9% Similarity=0.046 Sum_probs=35.1
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh----c-CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES----F-EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~----l-~~~DGVIL~GG 72 (421)
|||+.... .+.+..-+.....+++.+.|..+++.....+.+...+. . ..+||||+.+.
T Consensus 2 I~vi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (265)
T cd06291 2 IGLIVPTI--SNPFFSELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH 64 (265)
T ss_pred EEEEECCC--CChhHHHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEecC
Confidence 55655421 23455556666678888999988877654333222221 1 36999999764
No 352
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.41 E-value=3.6e+02 Score=22.30 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCEEEEch
Q 041791 114 LRLAKLCLERNIPYLGICR 132 (421)
Q Consensus 114 l~li~~ale~~iPiLGICl 132 (421)
.+.++.+.+++.|+++|+-
T Consensus 63 ~~~~~~a~~~g~~vi~iT~ 81 (126)
T cd05008 63 LAALRLAKEKGAKTVAITN 81 (126)
T ss_pred HHHHHHHHHcCCeEEEEEC
Confidence 4677888899999999994
No 353
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=20.28 E-value=4.1e+02 Score=25.64 Aligned_cols=60 Identities=7% Similarity=-0.078 Sum_probs=34.7
Q ss_pred CCCcEEEEEeccccC----cccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCC
Q 041791 8 MILPRVLIVSRRTVR----KNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGE 73 (421)
Q Consensus 8 ~~~P~igI~~~~~~~----~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~ 73 (421)
...|+|++++..... .......--....+.|++. ..+..+... .+.++ +++|.|||.|..
T Consensus 144 ~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~--~~~IP---~~~d~Lvi~~P~ 207 (271)
T PF09822_consen 144 DEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA--NEEIP---DDADVLVIAGPK 207 (271)
T ss_pred ccCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc--ccccC---CCCCEEEEECCC
Confidence 347999999965433 0110111222345667777 777666543 23333 579999999865
Done!