Query 041791
Match_columns 421
No_of_seqs 324 out of 1851
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fij_A LIN1909 protein; 11172J 100.0 5.1E-44 1.8E-48 345.0 22.3 237 9-285 3-245 (254)
2 1l9x_A Gamma-glutamyl hydrolas 100.0 8.1E-33 2.8E-37 275.0 13.1 220 7-282 27-278 (315)
3 2a9v_A GMP synthase; structura 100.0 1.3E-31 4.4E-36 251.8 19.2 192 9-285 12-204 (212)
4 1qdl_B Protein (anthranilate s 100.0 3.2E-30 1.1E-34 238.7 21.3 185 13-278 4-193 (195)
5 1wl8_A GMP synthase [glutamine 100.0 5.3E-30 1.8E-34 235.6 20.8 186 12-281 2-187 (189)
6 2vpi_A GMP synthase; guanine m 100.0 8.9E-31 3E-35 247.4 15.7 186 11-281 25-211 (218)
7 1i1q_B Anthranilate synthase c 100.0 7.8E-29 2.7E-33 228.7 21.2 187 11-280 1-189 (192)
8 1a9x_B Carbamoyl phosphate syn 100.0 2.4E-28 8.3E-33 248.0 22.6 184 11-284 191-377 (379)
9 1gpm_A GMP synthetase, XMP ami 100.0 1.1E-28 3.7E-33 260.8 16.7 194 8-278 5-199 (525)
10 1o1y_A Conserved hypothetical 100.0 8.2E-28 2.8E-32 229.9 20.2 192 11-285 13-205 (239)
11 3tqi_A GMP synthase [glutamine 100.0 2.4E-28 8.2E-33 258.2 15.7 193 10-279 10-203 (527)
12 2ywb_A GMP synthase [glutamine 100.0 1.2E-28 4.2E-33 259.1 13.3 183 13-280 2-184 (503)
13 2w7t_A CTP synthetase, putativ 100.0 4.5E-28 1.5E-32 236.2 14.7 221 10-284 8-258 (273)
14 3uow_A GMP synthetase; structu 99.9 2.9E-27 9.9E-32 251.3 19.3 203 11-278 8-227 (556)
15 3nva_A CTP synthase; rossman f 99.9 2.1E-27 7.3E-32 247.5 17.8 222 11-281 294-533 (535)
16 2v4u_A CTP synthase 2; pyrimid 99.9 4.8E-27 1.6E-31 230.8 13.8 171 61-285 88-279 (289)
17 2vxo_A GMP synthase [glutamine 99.9 5.5E-27 1.9E-31 254.5 15.5 183 10-277 29-211 (697)
18 3m3p_A Glutamine amido transfe 99.9 4.3E-26 1.5E-30 219.8 18.6 176 10-257 3-181 (250)
19 1vco_A CTP synthetase; tetrame 99.9 3.6E-26 1.2E-30 241.3 17.4 226 10-284 300-547 (550)
20 3l7n_A Putative uncharacterize 99.9 1.6E-25 5.3E-30 213.4 18.9 179 33-283 16-197 (236)
21 1s1m_A CTP synthase; CTP synth 99.9 8.6E-26 2.9E-30 238.2 17.6 219 10-286 289-542 (545)
22 2ywj_A Glutamine amidotransfer 99.9 1.1E-25 3.8E-30 206.0 15.5 182 12-281 2-184 (186)
23 3d54_D Phosphoribosylformylgly 99.9 3.1E-25 1.1E-29 206.4 17.4 202 10-281 2-212 (213)
24 1q7r_A Predicted amidotransfer 99.9 3.6E-25 1.2E-29 208.5 16.1 193 8-284 21-213 (219)
25 3r75_A Anthranilate/para-amino 99.9 4.3E-25 1.5E-29 237.8 18.3 189 11-282 447-635 (645)
26 4gud_A Imidazole glycerol phos 99.9 3.3E-26 1.1E-30 213.3 8.3 201 11-282 3-206 (211)
27 2ywd_A Glutamine amidotransfer 99.9 7.4E-25 2.5E-29 200.8 13.9 187 10-281 2-190 (191)
28 2nv0_A Glutamine amidotransfer 99.9 5E-24 1.7E-28 196.6 17.7 192 11-286 2-193 (196)
29 1gpw_B Amidotransferase HISH; 99.9 4.1E-25 1.4E-29 204.7 9.3 187 12-281 2-198 (201)
30 2abw_A PDX2 protein, glutamina 99.9 2.1E-23 7.3E-28 196.9 13.9 201 9-286 2-219 (227)
31 1ka9_H Imidazole glycerol phos 99.9 1.2E-23 4E-28 195.0 8.7 189 11-280 3-200 (200)
32 2iss_D Glutamine amidotransfer 99.9 6.1E-23 2.1E-27 191.6 12.7 189 9-280 19-207 (208)
33 1jvn_A Glutamine, bifunctional 99.9 2.6E-23 8.8E-28 221.0 3.2 200 10-280 4-215 (555)
34 2vdj_A Homoserine O-succinyltr 99.7 9.3E-17 3.2E-21 158.3 18.3 135 62-257 98-240 (301)
35 2h2w_A Homoserine O-succinyltr 99.7 1.3E-16 4.4E-21 157.9 18.7 181 11-257 48-251 (312)
36 3ugj_A Phosphoribosylformylgly 99.3 1.8E-11 6.3E-16 140.1 15.0 223 9-280 1046-1302(1303)
37 3l4e_A Uncharacterized peptida 98.5 1.7E-07 6E-12 87.3 6.8 101 10-139 27-128 (206)
38 1fy2_A Aspartyl dipeptidase; s 98.4 3.2E-07 1.1E-11 86.6 6.5 99 10-140 31-129 (229)
39 1oi4_A Hypothetical protein YH 97.7 0.00016 5.5E-09 65.8 10.9 97 10-140 23-134 (193)
40 2rk3_A Protein DJ-1; parkinson 97.2 0.001 3.5E-08 60.4 9.1 98 10-140 3-115 (197)
41 4hcj_A THIJ/PFPI domain protei 97.2 0.00088 3E-08 60.6 8.4 103 4-140 2-117 (177)
42 1vhq_A Enhancing lycopene bios 97.0 0.0023 7.8E-08 59.8 9.1 30 113-142 122-151 (232)
43 3l18_A Intracellular protease 97.0 0.0038 1.3E-07 54.9 10.0 96 11-140 3-111 (168)
44 2vrn_A Protease I, DR1199; cys 96.9 0.0035 1.2E-07 56.2 9.6 99 8-140 7-124 (190)
45 4e08_A DJ-1 beta; flavodoxin-l 96.8 0.0059 2E-07 54.9 10.2 98 9-140 4-116 (190)
46 2ab0_A YAJL; DJ-1/THIJ superfa 96.8 0.0027 9.2E-08 58.1 7.7 96 11-140 3-116 (205)
47 3f5d_A Protein YDEA; unknow pr 96.6 0.0092 3.2E-07 54.9 10.0 96 9-140 2-109 (206)
48 3efe_A THIJ/PFPI family protei 96.6 0.013 4.5E-07 53.9 10.8 28 113-140 94-121 (212)
49 3l3b_A ES1 family protein; ssg 96.6 0.014 4.8E-07 55.3 11.0 29 113-141 140-168 (242)
50 2fex_A Conserved hypothetical 96.5 0.0061 2.1E-07 54.8 7.9 95 11-140 2-110 (188)
51 3n7t_A Macrophage binding prot 96.4 0.012 4.1E-07 55.8 9.2 28 113-140 127-154 (247)
52 3kkl_A Probable chaperone prot 96.1 0.013 4.6E-07 55.4 8.2 28 113-140 120-147 (244)
53 3en0_A Cyanophycinase; serine 96.1 0.0054 1.9E-07 59.8 5.5 99 10-139 56-160 (291)
54 1rw7_A YDR533CP; alpha-beta sa 96.1 0.016 5.6E-07 54.4 8.3 28 113-140 120-147 (243)
55 3er6_A Putative transcriptiona 96.1 0.029 9.9E-07 51.5 9.9 28 113-140 97-124 (209)
56 3ej6_A Catalase-3; heme, hydro 95.9 0.064 2.2E-06 57.9 12.9 105 11-140 538-646 (688)
57 3uk7_A Class I glutamine amido 95.8 0.034 1.2E-06 55.8 10.0 97 10-140 12-137 (396)
58 3ttv_A Catalase HPII; heme ori 95.8 0.03 1E-06 60.8 10.0 95 11-140 601-708 (753)
59 3uk7_A Class I glutamine amido 95.7 0.042 1.4E-06 55.1 10.1 98 9-140 204-330 (396)
60 3cne_A Putative protease I; st 95.5 0.013 4.4E-07 51.9 5.0 29 112-140 92-120 (175)
61 3gra_A Transcriptional regulat 95.4 0.045 1.5E-06 49.9 8.4 27 114-140 91-117 (202)
62 3ot1_A 4-methyl-5(B-hydroxyeth 95.4 0.031 1.1E-06 51.1 7.1 97 10-140 9-121 (208)
63 3noq_A THIJ/PFPI family protei 95.1 0.058 2E-06 50.3 8.3 28 113-140 86-113 (231)
64 2iuf_A Catalase; oxidoreductas 95.0 0.075 2.6E-06 57.4 9.7 111 11-140 530-648 (688)
65 3fse_A Two-domain protein cont 94.7 0.099 3.4E-06 52.4 9.2 97 10-140 10-121 (365)
66 1sy7_A Catalase 1; heme oxidat 94.5 0.12 4.2E-06 56.1 9.8 100 9-142 533-646 (715)
67 1u9c_A APC35852; structural ge 94.4 0.021 7E-07 52.6 3.1 28 113-140 111-138 (224)
68 3ewn_A THIJ/PFPI family protei 94.2 0.15 5E-06 48.4 8.8 28 113-140 106-133 (253)
69 3mgk_A Intracellular protease/ 92.7 0.07 2.4E-06 49.0 3.7 28 113-140 86-113 (211)
70 1n57_A Chaperone HSP31, protei 92.6 0.068 2.3E-06 51.7 3.5 29 113-141 167-195 (291)
71 1mkz_A Molybdenum cofactor bio 92.3 0.34 1.2E-05 43.2 7.4 75 1-76 1-82 (172)
72 3pzy_A MOG; ssgcid, seattle st 90.6 0.18 6.3E-06 44.7 3.9 67 7-76 4-79 (164)
73 1y5e_A Molybdenum cofactor bio 87.3 1.1 3.7E-05 39.6 6.5 67 9-76 12-85 (169)
74 3rfq_A Pterin-4-alpha-carbinol 85.2 0.99 3.4E-05 40.8 5.1 70 7-77 27-103 (185)
75 2pjk_A 178AA long hypothetical 84.7 1.3 4.5E-05 39.6 5.7 70 7-76 12-94 (178)
76 3bhn_A THIJ/PFPI domain protei 81.8 0.46 1.6E-05 44.5 1.5 19 122-140 109-128 (236)
77 1di6_A MOGA, molybdenum cofact 81.5 1.1 3.7E-05 40.8 3.9 68 8-77 1-80 (195)
78 2an1_A Putative kinase; struct 81.1 1.5 5.1E-05 41.8 4.8 85 10-134 5-97 (292)
79 3kbq_A Protein TA0487; structu 79.9 1.6 5.4E-05 39.0 4.3 67 9-75 2-74 (172)
80 3l49_A ABC sugar (ribose) tran 79.6 10 0.00035 34.6 10.0 64 7-72 2-70 (291)
81 1z0s_A Probable inorganic poly 79.3 2.6 8.9E-05 40.5 5.9 47 12-72 31-77 (278)
82 1jlj_A Gephyrin; globular alph 79.0 1.9 6.7E-05 38.9 4.6 75 2-76 5-91 (189)
83 2pbq_A Molybdenum cofactor bio 78.6 1.7 5.7E-05 38.8 4.0 70 7-76 2-81 (178)
84 3h75_A Periplasmic sugar-bindi 78.5 5 0.00017 38.2 7.8 62 9-71 2-70 (350)
85 2is8_A Molybdopterin biosynthe 78.5 1.3 4.3E-05 39.0 3.1 67 10-76 1-75 (164)
86 4gdh_A DJ-1, uncharacterized p 76.6 1.1 3.7E-05 40.3 2.2 24 114-137 96-120 (194)
87 1u0t_A Inorganic polyphosphate 76.3 6.5 0.00022 37.8 7.9 36 11-49 5-40 (307)
88 3gv0_A Transcriptional regulat 76.3 10 0.00035 34.8 9.0 64 9-72 7-75 (288)
89 1g8l_A Molybdopterin biosynthe 75.8 2.9 0.0001 42.3 5.4 68 9-76 176-256 (411)
90 2g2c_A Putative molybdenum cof 75.4 1.5 5.2E-05 38.6 2.8 68 9-76 4-82 (167)
91 2qv7_A Diacylglycerol kinase D 74.8 9.4 0.00032 36.9 8.6 98 8-143 22-126 (337)
92 2ioj_A Hypothetical protein AF 73.9 5.5 0.00019 33.6 5.9 70 32-139 42-113 (139)
93 1wu2_A MOEA protein, molybdopt 73.1 2.9 0.0001 42.1 4.6 69 9-77 181-264 (396)
94 1uz5_A MOEA protein, 402AA lon 72.7 2.5 8.7E-05 42.6 4.0 68 9-76 179-259 (402)
95 3k4h_A Putative transcriptiona 72.5 18 0.00063 32.8 9.7 64 9-72 7-78 (292)
96 3rot_A ABC sugar transporter, 72.4 17 0.00058 33.5 9.5 62 9-72 2-70 (297)
97 3l6u_A ABC-type sugar transpor 72.4 21 0.0007 32.5 10.0 62 9-72 7-73 (293)
98 3tb6_A Arabinose metabolism tr 71.4 28 0.00097 31.5 10.7 62 10-73 15-81 (298)
99 3jy6_A Transcriptional regulat 70.3 18 0.00062 32.8 9.1 64 7-72 4-72 (276)
100 3iwt_A 178AA long hypothetical 70.1 10 0.00035 33.2 7.0 67 9-75 14-93 (178)
101 3cs3_A Sugar-binding transcrip 69.8 15 0.00051 33.4 8.4 59 10-72 8-66 (277)
102 3hcw_A Maltose operon transcri 69.7 17 0.00059 33.4 8.9 65 8-72 5-77 (295)
103 1uuy_A CNX1, molybdopterin bio 68.6 6.1 0.00021 34.5 5.1 69 7-75 2-83 (167)
104 2fts_A Gephyrin; gephyrin, neu 67.5 3.2 0.00011 42.1 3.4 66 10-75 181-259 (419)
105 3o74_A Fructose transport syst 67.0 28 0.00097 31.1 9.6 61 11-73 3-68 (272)
106 3egc_A Putative ribose operon 66.6 24 0.00081 32.2 9.1 63 9-73 7-74 (291)
107 2fn9_A Ribose ABC transporter, 66.2 35 0.0012 31.0 10.1 60 11-72 3-67 (290)
108 3ksm_A ABC-type sugar transpor 65.6 16 0.00056 32.7 7.7 60 11-72 1-68 (276)
109 3dbi_A Sugar-binding transcrip 65.4 42 0.0014 31.4 10.8 63 10-72 61-128 (338)
110 3uug_A Multiple sugar-binding 63.9 29 0.001 32.1 9.3 61 10-72 3-68 (330)
111 3m9w_A D-xylose-binding peripl 63.7 33 0.0011 31.6 9.6 61 10-72 2-67 (313)
112 2x7x_A Sensor protein; transfe 63.1 34 0.0012 31.9 9.6 60 10-72 6-71 (325)
113 3brq_A HTH-type transcriptiona 62.7 39 0.0013 30.5 9.7 63 10-72 19-86 (296)
114 2fep_A Catabolite control prot 60.9 43 0.0015 30.6 9.7 61 10-72 16-81 (289)
115 2dri_A D-ribose-binding protei 59.0 37 0.0013 30.6 8.8 61 10-72 1-66 (271)
116 3kke_A LACI family transcripti 58.5 43 0.0015 30.8 9.3 61 11-73 16-81 (303)
117 3bbl_A Regulatory protein of L 58.4 56 0.0019 29.6 10.0 62 11-72 5-73 (287)
118 2rgy_A Transcriptional regulat 58.4 40 0.0014 30.7 9.0 61 10-72 8-76 (290)
119 3huu_A Transcription regulator 58.0 32 0.0011 31.7 8.3 63 10-72 22-92 (305)
120 3qk7_A Transcriptional regulat 57.2 63 0.0022 29.5 10.2 64 10-73 6-75 (294)
121 3h5o_A Transcriptional regulat 56.8 60 0.002 30.4 10.2 60 11-72 63-127 (339)
122 2rjo_A Twin-arginine transloca 55.5 31 0.001 32.3 7.8 63 8-72 3-72 (332)
123 2vk2_A YTFQ, ABC transporter p 54.5 54 0.0018 30.1 9.3 60 11-72 3-67 (306)
124 3c3k_A Alanine racemase; struc 54.3 67 0.0023 29.1 9.8 61 10-72 8-73 (285)
125 3brs_A Periplasmic binding pro 54.2 25 0.00084 31.9 6.7 64 9-72 4-74 (289)
126 3e3m_A Transcriptional regulat 54.0 50 0.0017 31.2 9.2 60 11-72 71-135 (355)
127 3e61_A Putative transcriptiona 53.4 27 0.00091 31.5 6.8 59 11-71 9-72 (277)
128 2o20_A Catabolite control prot 53.1 73 0.0025 29.7 10.1 60 11-72 64-128 (332)
129 3pfn_A NAD kinase; structural 52.9 12 0.0004 37.3 4.4 33 12-47 40-72 (365)
130 3i6i_A Putative leucoanthocyan 52.8 20 0.00068 34.1 6.0 65 1-73 1-93 (346)
131 2fvy_A D-galactose-binding per 52.4 62 0.0021 29.4 9.2 60 11-72 3-68 (309)
132 2i2c_A Probable inorganic poly 52.1 11 0.00037 35.5 3.9 43 12-72 2-44 (272)
133 8abp_A L-arabinose-binding pro 51.7 40 0.0014 30.8 7.8 59 11-72 3-66 (306)
134 2ioy_A Periplasmic sugar-bindi 51.0 81 0.0028 28.5 9.8 60 11-72 2-66 (283)
135 2iks_A DNA-binding transcripti 51.0 69 0.0024 29.0 9.3 61 10-72 20-85 (293)
136 3g1w_A Sugar ABC transporter; 50.6 41 0.0014 30.7 7.7 60 11-72 5-70 (305)
137 3kjx_A Transcriptional regulat 50.4 59 0.002 30.5 9.0 61 10-72 68-133 (344)
138 3o1i_D Periplasmic protein TOR 49.9 41 0.0014 30.5 7.6 62 9-72 4-72 (304)
139 3d8u_A PURR transcriptional re 49.7 37 0.0013 30.4 7.1 60 11-72 4-68 (275)
140 1a9x_A Carbamoyl phosphate syn 48.8 11 0.00038 42.6 4.0 44 344-390 92-139 (1073)
141 4fe7_A Xylose operon regulator 48.3 35 0.0012 33.4 7.1 65 338-408 323-395 (412)
142 2h3h_A Sugar ABC transporter, 48.0 88 0.003 28.7 9.6 59 11-72 2-66 (313)
143 2q62_A ARSH; alpha/beta, flavo 47.2 34 0.0012 31.8 6.5 62 8-70 32-105 (247)
144 3g85_A Transcriptional regulat 44.7 32 0.0011 31.2 5.8 62 10-72 11-77 (289)
145 3bil_A Probable LACI-family tr 44.6 68 0.0023 30.3 8.4 60 11-72 67-131 (348)
146 3k9c_A Transcriptional regulat 43.3 51 0.0017 30.0 7.1 60 10-72 12-75 (289)
147 3clk_A Transcription regulator 43.3 52 0.0018 29.9 7.1 61 10-72 8-74 (290)
148 1dbq_A Purine repressor; trans 42.9 85 0.0029 28.2 8.5 61 10-72 7-72 (289)
149 3dhn_A NAD-dependent epimerase 42.2 1.6E+02 0.0054 25.4 10.0 55 11-73 5-77 (227)
150 3s40_A Diacylglycerol kinase; 41.5 83 0.0028 29.7 8.4 62 10-72 8-72 (304)
151 3rht_A (gatase1)-like protein; 41.0 23 0.00077 33.5 4.2 57 8-71 2-58 (259)
152 1t0b_A THUA-like protein; treh 40.8 52 0.0018 30.6 6.7 62 9-70 6-74 (252)
153 2hsg_A Glucose-resistance amyl 40.8 67 0.0023 29.9 7.6 61 10-72 60-125 (332)
154 1gud_A ALBP, D-allose-binding 40.5 1E+02 0.0035 27.9 8.7 60 11-72 2-68 (288)
155 1vi6_A 30S ribosomal protein S 40.5 1.2E+02 0.0041 27.6 8.8 17 115-131 129-145 (208)
156 1jx6_A LUXP protein; protein-l 40.3 2E+02 0.0069 26.5 10.9 61 10-71 43-112 (342)
157 3afo_A NADH kinase POS5; alpha 40.3 11 0.00037 37.9 1.9 34 11-47 42-77 (388)
158 1a9x_A Carbamoyl phosphate syn 39.3 21 0.00073 40.3 4.4 42 344-390 644-685 (1073)
159 2bon_A Lipid kinase; DAG kinas 38.9 73 0.0025 30.5 7.7 58 11-72 30-91 (332)
160 3rpe_A MDAB, modulator of drug 37.5 39 0.0013 30.9 5.1 60 11-70 26-90 (218)
161 4eg0_A D-alanine--D-alanine li 36.4 95 0.0032 29.1 7.9 60 9-70 12-72 (317)
162 1qpz_A PURA, protein (purine n 35.8 1.8E+02 0.0062 27.0 9.8 61 10-72 58-123 (340)
163 3d02_A Putative LACI-type tran 35.7 1.8E+02 0.006 26.2 9.5 60 11-72 5-70 (303)
164 4gi5_A Quinone reductase; prot 35.2 50 0.0017 31.4 5.6 47 2-49 14-60 (280)
165 1tjy_A Sugar transport protein 35.0 1.5E+02 0.0052 27.3 9.1 60 11-72 4-69 (316)
166 2fzv_A Putative arsenical resi 34.5 62 0.0021 30.7 6.2 60 10-70 58-130 (279)
167 3gbv_A Putative LACI-family tr 34.5 1.2E+02 0.004 27.4 8.0 63 9-72 7-78 (304)
168 2c92_A 6,7-dimethyl-8-ribityll 34.1 1.2E+02 0.004 26.6 7.4 59 11-71 18-80 (160)
169 2a5l_A Trp repressor binding p 34.0 74 0.0025 27.3 6.2 58 10-70 5-78 (200)
170 4e5v_A Putative THUA-like prot 33.9 2.9E+02 0.0098 25.9 10.8 59 10-71 4-66 (281)
171 3bch_A 40S ribosomal protein S 33.6 1.3E+02 0.0045 28.3 8.1 17 115-131 165-181 (253)
172 2amj_A Modulator of drug activ 33.4 54 0.0018 29.1 5.3 59 12-70 14-77 (204)
173 1di0_A Lumazine synthase; tran 33.2 92 0.0032 27.1 6.6 62 8-71 8-77 (158)
174 3qvo_A NMRA family protein; st 32.8 55 0.0019 29.1 5.3 59 6-72 19-97 (236)
175 1gvn_A Epsilon; postsegregatio 32.7 24 0.00084 27.9 2.4 28 387-414 58-85 (90)
176 3k5p_A D-3-phosphoglycerate de 32.3 30 0.001 35.0 3.7 45 33-77 27-72 (416)
177 2h0a_A TTHA0807, transcription 32.0 47 0.0016 29.7 4.7 58 13-72 2-64 (276)
178 1ehs_A STB, heat-stable entero 30.5 9.7 0.00033 25.7 -0.2 16 127-142 32-47 (48)
179 3hs3_A Ribose operon repressor 29.7 1.1E+02 0.0036 27.6 6.8 61 9-71 9-75 (277)
180 2zkq_b 40S ribosomal protein S 29.4 1.6E+02 0.0053 28.4 8.0 17 115-131 132-148 (295)
181 1oks_A RNA polymerase alpha su 28.8 28 0.00097 24.9 2.0 38 370-409 11-48 (56)
182 3u5c_A 40S ribosomal protein S 28.8 2.1E+02 0.0073 26.8 8.7 17 115-131 131-147 (252)
183 3miz_A Putative transcriptiona 28.3 97 0.0033 28.1 6.3 61 10-72 13-79 (301)
184 3nq4_A 6,7-dimethyl-8-ribityll 28.2 2.9E+02 0.01 23.9 9.1 60 10-71 12-80 (156)
185 2qu7_A Putative transcriptiona 27.6 72 0.0025 28.8 5.2 60 11-73 9-73 (288)
186 1jr2_A Uroporphyrinogen-III sy 26.9 88 0.003 29.0 5.8 43 32-74 38-87 (286)
187 1ydg_A Trp repressor binding p 26.8 80 0.0027 27.6 5.2 57 11-70 7-85 (211)
188 2hqb_A Transcriptional activat 25.5 1.7E+02 0.0057 27.0 7.5 62 11-72 6-72 (296)
189 3dqp_A Oxidoreductase YLBE; al 24.9 3.2E+02 0.011 23.3 9.8 46 28-73 10-73 (219)
190 1xq6_A Unknown protein; struct 24.7 2E+02 0.0069 24.9 7.6 57 9-73 3-79 (253)
191 2qip_A Protein of unknown func 24.6 1.3E+02 0.0045 25.6 6.1 63 32-132 64-141 (165)
192 1byk_A Protein (trehalose oper 23.5 1.1E+02 0.0039 26.8 5.7 60 11-72 3-67 (255)
193 1t5b_A Acyl carrier protein ph 23.3 1.2E+02 0.004 25.9 5.6 39 12-50 3-43 (201)
194 1sqs_A Conserved hypothetical 23.2 1.2E+02 0.0041 27.3 5.8 37 12-49 3-40 (242)
195 2i0f_A 6,7-dimethyl-8-ribityll 23.2 3.7E+02 0.012 23.3 8.6 59 11-71 13-81 (157)
196 3m2p_A UDP-N-acetylglucosamine 23.1 2.1E+02 0.0072 26.1 7.7 55 11-73 3-72 (311)
197 1eiw_A Hypothetical protein MT 22.9 66 0.0023 26.3 3.5 15 117-131 60-74 (111)
198 3dzv_A 4-methyl-5-(beta-hydrox 21.8 3.8E+02 0.013 25.1 9.1 52 10-73 17-68 (273)
199 2b99_A Riboflavin synthase; lu 21.7 2.4E+02 0.0084 24.4 7.1 57 11-72 3-66 (156)
200 2r47_A Uncharacterized protein 21.4 27 0.00092 30.6 0.8 18 115-132 108-125 (157)
201 1ejb_A Lumazine synthase; anal 21.3 1.5E+02 0.0053 26.0 5.8 60 10-71 16-88 (168)
202 2qh8_A Uncharacterized protein 21.0 1.5E+02 0.0051 27.1 6.1 61 9-72 7-78 (302)
203 2c5a_A GDP-mannose-3', 5'-epim 20.8 2.5E+02 0.0087 26.6 7.9 57 9-73 28-103 (379)
204 2vzf_A NADH-dependent FMN redu 20.7 85 0.0029 27.3 4.1 59 12-71 4-77 (197)
205 1rvv_A Riboflavin synthase; tr 20.5 3.8E+02 0.013 23.1 8.1 59 11-71 13-79 (154)
206 1hdo_A Biliverdin IX beta redu 20.4 3.1E+02 0.01 22.8 7.7 55 11-73 4-77 (206)
207 2p63_A Cell division control p 20.4 68 0.0023 23.0 2.6 17 385-401 32-48 (56)
208 3ruf_A WBGU; rossmann fold, UD 20.4 1.7E+02 0.0059 27.1 6.5 57 9-73 24-110 (351)
209 3st7_A Capsular polysaccharide 20.2 1.1E+02 0.0036 29.1 5.0 54 12-73 2-56 (369)
210 3gbg_A TCP pilus virulence reg 20.1 49 0.0017 30.2 2.4 56 338-399 187-243 (276)
No 1
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=100.00 E-value=5.1e-44 Score=345.04 Aligned_cols=237 Identities=30% Similarity=0.454 Sum_probs=190.2
Q ss_pred CCcEEEEEeccccCc-----ccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCcccc
Q 041791 9 ILPRVLIVSRRTVRK-----NKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAE 83 (421)
Q Consensus 9 ~~P~igI~~~~~~~~-----~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~ 83 (421)
++|+|||++...... +.-.+|+...|+++|+++|+.|+++|+..+.+ +.+.++.+|||||+||++++|+.|+++
T Consensus 3 ~~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~~v~P~~yg~~ 81 (254)
T 3fij_A 3 LKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQDITPQLYLEE 81 (254)
T ss_dssp CCCEEEEEC------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCSCCCGGGGTCC
T ss_pred CCCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCCCCChhhcCCc
Confidence 579999999854321 23467999999999999999999999877655 677778999999999999999999987
Q ss_pred ccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCcee
Q 041791 84 LSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRV 163 (421)
Q Consensus 84 ~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v 163 (421)
.. ++.+.+++.||..++.+++++++.++|+||||+|||+|++++||+++++.....+ ..+
T Consensus 82 ~~--------------~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~------~~~ 141 (254)
T 3fij_A 82 PS--------------QEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVET------KAL 141 (254)
T ss_dssp CC--------------TTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSS------CCC
T ss_pred cC--------------cccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecccccccC------ccc
Confidence 63 5556678999999999999999999999999999999999999999887532211 224
Q ss_pred eeccccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeC-CCCCCCC
Q 041791 164 VHMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDP-DAYNPQE 242 (421)
Q Consensus 164 ~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~-~~~~~~~ 242 (421)
.|.+......+|+.|.+.+++++++.+++ .+.|+++|++.|+.+|++++++|+++||.||||+++ +
T Consensus 142 ~h~~~~~~~~g~~~v~~~~~s~l~~~~~~-------~~~v~~~H~~~v~~l~~g~~v~a~s~dg~ieai~~~~~------ 208 (254)
T 3fij_A 142 QHLQRVDEQLGSHTIDIEPTSELAKHHPN-------KKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNL------ 208 (254)
T ss_dssp CCBCCSCTTSCCEEEEECTTSSGGGTCCT-------TEEECCBCSCEESSCCSSEEEEEEETTCCEEEEEESSC------
T ss_pred cccCCCCCccceEEEEeCCCChHHHhcCC-------cEEEEEeccchhhccCCCcEEEEEeCCCcEEEEEecCC------
Confidence 45544445677999999999999998876 688999999999999999999999999999999998 6
Q ss_pred CCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 041791 243 GKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEK 285 (421)
Q Consensus 243 ~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~ 285 (421)
+++++|||||||++.++.. ...++|++|+++|++++.
T Consensus 209 ~~~~~gvQfHPE~~~~~~~------~~~~lf~~Fv~~~~~~~~ 245 (254)
T 3fij_A 209 PSWYLGVQWHPELMFQTDP------ESEQLFQALVDESKKTMV 245 (254)
T ss_dssp SSCEEEESSCGGGTGGGCH------HHHHHHHHHHHHHHSCC-
T ss_pred CCeEEEEEcCCccCCCCCc------hHHHHHHHHHHHHHHHHh
Confidence 3569999999999875322 136899999999876543
No 2
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.98 E-value=8.1e-33 Score=274.97 Aligned_cols=220 Identities=20% Similarity=0.196 Sum_probs=151.3
Q ss_pred CCCCcEEEEEeccccCc---ccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCC-CCCCCCccc
Q 041791 7 SMILPRVLIVSRRTVRK---NKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGE-DIDPSLYDA 82 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~---~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~-didp~~y~~ 82 (421)
.+.+|+|||+++..... ..-..|+..+|+++|+++|+.++++|.+.+.+.+.+.++.+||||||||+ +++|..|++
T Consensus 27 ~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~ 106 (315)
T 1l9x_A 27 TAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAK 106 (315)
T ss_dssp -CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHH
T ss_pred cCCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhH
Confidence 35579999999754321 11246788899999999999999999877667776667789999999997 887765532
Q ss_pred cccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHc-----CCCEEEEchhhHHHHHHhCCcccccchhhhcccc
Q 041791 83 ELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLER-----NIPYLGICRGSQVLNVACGGTLYQDIEKEISKNC 157 (421)
Q Consensus 83 ~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~-----~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~ 157 (421)
. +..+++.+++. ++||||||+|||+|++++||++......+.+
T Consensus 107 ~-----------------------------~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~~~~g--- 154 (315)
T 1l9x_A 107 V-----------------------------AKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVD--- 154 (315)
T ss_dssp H-----------------------------HHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEEEEE---
T ss_pred H-----------------------------HHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccccccC---
Confidence 1 12334444433 6999999999999999999986543211111
Q ss_pred CCCceeeeccccCCCCceeEEEE---ccCCcchhhccccccc--CceeEEEecccccccc--------ccCCCeEEEEEe
Q 041791 158 SLGQRVVHMNYENYDGHRHLVKV---VEDTPLHQWFRDSLEE--NKMEIMVNSYHHQGVK--------KLAQRFVPMAFA 224 (421)
Q Consensus 158 ~~~~~v~H~~~~~~~~~~h~V~i---~~~s~L~~~~~~~l~~--~~~~~~V~s~H~~~V~--------~L~~g~~vla~s 224 (421)
...++.. .+++++++.+++.+.. +...+.++ +|+++|+ .+|++++++|++
T Consensus 155 ----------------~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~-~H~~~V~~~~~~~~~~l~~g~~v~A~s 217 (315)
T 1l9x_A 155 ----------------VAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTAN-FHKWSLSVKNFTMNEKLKKFFNVLTTN 217 (315)
T ss_dssp ----------------EEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEE-EEEEECBHHHHHTCHHHHHHEEEEEEE
T ss_pred ----------------CCCCeeeccCCCCChHHHhcChhhhhhccccceEEE-hhhhhcCccccccccccCCCCEEEEEc
Confidence 0122222 2567888877542100 00134454 9999997 789999999999
Q ss_pred CCCeEEEE---EeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCch-------hhHHHHHHHHHHHH
Q 041791 225 SDGLIEGF---YDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPG-------CKSAYQEFVKAVIA 282 (421)
Q Consensus 225 ~dg~ieai---e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~-------~~~lf~~Fv~a~~~ 282 (421)
+||.+|+| ++++ .+++|||||||+..+..+...+.|. ..++|++|+++|++
T Consensus 218 ~dg~ve~i~~i~~~~-------~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~ 278 (315)
T 1l9x_A 218 TDGKIEFISTMEGYK-------YPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARK 278 (315)
T ss_dssp ESSSCEEEEEEEESS-------SCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEeccCC-------CCEEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHh
Confidence 99987666 6554 5799999999997643322111121 45899999999863
No 3
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.98 E-value=1.3e-31 Score=251.80 Aligned_cols=192 Identities=22% Similarity=0.372 Sum_probs=149.5
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCC-CCCCCCCccccccCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEG-EDIDPSLYDAELSGF 87 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG-~didp~~y~~~~~~~ 87 (421)
.+|+|+|+...+.. ...|+++|+++|+.+++++++.+.+.+ +.+|||||||| +. +.|++..
T Consensus 12 ~~~~i~~id~~~~~--------~~~~~~~l~~~G~~~~vv~~~~~~~~l----~~~DglIl~GG~p~---~~~~~~~--- 73 (212)
T 2a9v_A 12 HMLKIYVVDNGGQW--------THREWRVLRELGVDTKIVPNDIDSSEL----DGLDGLVLSGGAPN---IDEELDK--- 73 (212)
T ss_dssp CCCBEEEEEESCCT--------TCHHHHHHHHTTCBCCEEETTSCGGGG----TTCSEEEEEEECSC---GGGTGGG---
T ss_pred ccceEEEEeCCCcc--------HHHHHHHHHHCCCEEEEEeCCCCHHHH----hCCCEEEECCCCCC---CCccccc---
Confidence 35899999887543 335788899999999999976544433 45999999999 52 2232210
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecc
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
.+ .+.+++++.++|+||||+|||+|+.++||++.+....++
T Consensus 74 ----~~---------------------~l~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~~~~-------------- 114 (212)
T 2a9v_A 74 ----LG---------------------SVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEF-------------- 114 (212)
T ss_dssp ----HH---------------------HHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEEEEE--------------
T ss_pred ----ch---------------------hHHHHHHhCCCCEEEEChHHHHHHHHhCCEEEcCCCccc--------------
Confidence 11 123444678999999999999999999999887532222
Q ss_pred ccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 041791 168 YENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
+|+.+.+.+++++++.+++ .+.++++|++.|..+|++++++|+++||.++|+++++ .+++
T Consensus 115 ------G~~~v~~~~~~~l~~~~~~-------~~~v~~~H~~~v~~l~~~~~vlA~s~d~~i~ai~~~~-------~~i~ 174 (212)
T 2a9v_A 115 ------GKTKVSVMHSENIFGGLPS-------EITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKT-------RPIY 174 (212)
T ss_dssp ------EEEEEEESCCCGGGTTCCS-------EEEEEEEEEEEEESCCTTEEEEEECSSCSCSEEEESS-------SSEE
T ss_pred ------CceeeEECCCChhHhcCCC-------ceEEEeEhhhhHhhCCCCcEEEEEeCCCCEEEEEECC-------CCEE
Confidence 3788888888888887765 6788999999998899999999999999999999976 6899
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEK 285 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~ 285 (421)
|+|||||++.++. ..++|++|+++|+++.+
T Consensus 175 gvQfHPE~~~~~~--------g~~l~~~F~~~~~~~~~ 204 (212)
T 2a9v_A 175 ATQFHPEVEHTQY--------GRDIFRNFIGICASYRE 204 (212)
T ss_dssp EESSCTTSTTSTT--------HHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCcc--------HHHHHHHHHHHHHHhhh
Confidence 9999999986433 37899999998877643
No 4
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.97 E-value=3.2e-30 Score=238.71 Aligned_cols=185 Identities=19% Similarity=0.322 Sum_probs=140.7
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-ChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
|+|+.+.++. ...+.++|+++|+.+++++.+. +.+++... .+|||||+||++. + +..
T Consensus 4 i~iid~~~s~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil~gG~~~-~--~~~--------- 61 (195)
T 1qdl_B 4 TLIIDNYDSF--------VYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLIISPGPGT-P--EKR--------- 61 (195)
T ss_dssp EEEEECSCSS--------HHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEECCCSSC-T--TSH---------
T ss_pred EEEEECCCch--------HHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEECCCCCC-h--hhh---------
Confidence 8888865432 2356788999999999999753 33333321 5999999998741 1 100
Q ss_pred HHHHHhhccCccccchhhhH-HHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 92 LEEIRALHASDTAIDKEKDT-IELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~-~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
++. .+.++++++ +.++|+||||+|||+|+.++||++.+.... .|
T Consensus 62 -----------------~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~~~------------~~----- 106 (195)
T 1qdl_B 62 -----------------EDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRARKV------------FH----- 106 (195)
T ss_dssp -----------------HHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEEEE------------EE-----
T ss_pred -----------------hhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccCCC------------cC-----
Confidence 111 234677775 789999999999999999999998775321 12
Q ss_pred CCCceeEEEEccCC--cchhhcccccccCceeEEEeccccccccccCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEE
Q 041791 171 YDGHRHLVKVVEDT--PLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 171 ~~~~~h~V~i~~~s--~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
+.|+.+.+.+++ ++++.+++ .+.++++|++.|..+|++++++|++ +||.++|+++++ .+++
T Consensus 107 --g~~~~v~~~~~~~~~l~~~~~~-------~~~v~~~H~~~v~~l~~~~~vla~s~~~g~i~a~~~~~-------~~~~ 170 (195)
T 1qdl_B 107 --GKISNIILVNNSPLSLYYGIAK-------EFKATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEE-------YPIY 170 (195)
T ss_dssp --EEEEEEEECCSSCCSTTTTCCS-------EEEEEEEEEEEEECCCTTEEEEEEESSSCCEEEEEESS-------SSEE
T ss_pred --CCceEEEECCCCHhHHHhcCCC-------ceEEeccccchhhhCCCCcEEEEEECCCCcEEEEEeCC-------CCEE
Confidence 236777776677 78887765 6889999999998899999999999 899999999985 5899
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
|+|||||++.++. ..++|++|++
T Consensus 171 gvQfHPE~~~~~~--------g~~l~~~f~~ 193 (195)
T 1qdl_B 171 GVQFHPESVGTSL--------GYKILYNFLN 193 (195)
T ss_dssp EESSBTTSTTCTT--------HHHHHHHHHH
T ss_pred EEecCCCCCCCcc--------HHHHHHHHHh
Confidence 9999999987443 3789999987
No 5
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.97 E-value=5.3e-30 Score=235.59 Aligned_cols=186 Identities=20% Similarity=0.261 Sum_probs=140.8
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
.|+|+...... ...+.++|+++|+.+++++...+.+++.+ ..+||||||||+ +|..+ .
T Consensus 2 mi~iid~~~~~--------~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~--~~~~~---~------- 59 (189)
T 1wl8_A 2 MIVIMDNGGQY--------VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP--SLENT---G------- 59 (189)
T ss_dssp EEEEEECSCTT--------HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS--CTTCC---T-------
T ss_pred eEEEEECCCch--------HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC--Chhhh---h-------
Confidence 37888766432 23678899999999999997665444432 369999999997 43211 0
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
.+.++++.+.+.++|+||||+|||+|+.++||++.+....++
T Consensus 60 --------------------~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~------------------ 101 (189)
T 1wl8_A 60 --------------------NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKAEY------------------ 101 (189)
T ss_dssp --------------------THHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSCCSC------------------
T ss_pred --------------------hHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCCccc------------------
Confidence 124566766678999999999999999999999887532222
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEcc
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQF 251 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQF 251 (421)
++..+.+..+++++..+++ .+.++++|++.+.++|++++++|+++||.++|+++++ .+++|+||
T Consensus 102 --G~~~~~~~~~~~l~~~~~~-------~~~~~~~h~~~v~~l~~~~~vla~s~~g~i~a~~~~~-------~~~~gvQf 165 (189)
T 1wl8_A 102 --SLVEIEIIDEXEIFKGLPK-------RLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEE-------LPIYGVQF 165 (189)
T ss_dssp --EEEEEEESCC--CCTTSCS-------EEEEEECCSEEEEECCTTEEEEEEESSCSCSEEEESS-------SCEEEESS
T ss_pred --CceeEEEecCchHHhCCCC-------ceEEEEEeeeehhhCCCCcEEEEEcCCCCEEEEEeCC-------ceEEEEec
Confidence 2556666556667766654 6778999999998899999999999999999999986 56999999
Q ss_pred ccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 252 HPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 252 HPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
|||++.++. ..++|++|+++|+
T Consensus 166 HPE~~~~~~--------g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 166 HPEVAHTEK--------GEEILRNFAKLCG 187 (189)
T ss_dssp CTTSTTSTT--------HHHHHHHHHHHHC
T ss_pred CCCcCCCcc--------hHHHHHHHHHHHh
Confidence 999986433 3789999999774
No 6
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.97 E-value=8.9e-31 Score=247.36 Aligned_cols=186 Identities=23% Similarity=0.296 Sum_probs=140.3
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
++|+|+...+.. . ....++|+++|+.++++|++.+.+++.. ..+||||||||++ +.|+.+..
T Consensus 25 ~~I~iiD~g~~~-------~-~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~---~~~~~~~~----- 86 (218)
T 2vpi_A 25 GAVVILDAGAQY-------G-KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPN---SVYAEDAP----- 86 (218)
T ss_dssp TCEEEEECSTTT-------T-HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC------------CC-----
T ss_pred CeEEEEECCCch-------H-HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCc---ccccccch-----
Confidence 789999876432 2 3566889999999999998777666543 4699999999984 12322111
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
. .. +.+++.++|+||||+|||+|+.++||++.+....++
T Consensus 87 ----------~---~~-----------~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~~~~~~----------------- 125 (218)
T 2vpi_A 87 ----------W---FD-----------PAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVRED----------------- 125 (218)
T ss_dssp ----------C---CC-----------GGGGTSSCCEEEETHHHHHHHHHTTCCEEEEEECSC-----------------
T ss_pred ----------h---HH-----------HHHHHcCCCEEEEcHHHHHHHHHhCCceEeCCCCcc-----------------
Confidence 0 11 122357899999999999999999999887532222
Q ss_pred CCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 041791 171 YDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQ 250 (421)
Q Consensus 171 ~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQ 250 (421)
+++.+.+.+++++++.+++ .+.++++|++.|..+|++++++|++ ++.++||++++ .+++|+|
T Consensus 126 ---G~~~v~~~~~~~l~~~l~~-------~~~v~~~H~~~v~~l~~~~~vlA~s-~~~i~ai~~~~-------~~i~gvQ 187 (218)
T 2vpi_A 126 ---GVFNISVDNTCSLFRGLQK-------EEVVLLTHGDSVDKVADGFKVVARS-GNIVAGIANES-------KKLYGAQ 187 (218)
T ss_dssp ---EEEEEEECTTSGGGTTCCS-------EEEEEECSEEEESSCCTTCEEEEEE-TTEEEEEEETT-------TTEEEES
T ss_pred ---cEEEEEEccCChhHhcCCC-------CcEEeehhhhHhhhcCCCCEEEEEc-CCeEEEEEECC-------CCEEEEE
Confidence 3788988888899988875 5688999999999899999999999 77999999875 6899999
Q ss_pred cccCccCCCCCCCCCCchhhHHHHHHH-HHHH
Q 041791 251 FHPERMRNQDSDNFDYPGCKSAYQEFV-KAVI 281 (421)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv-~a~~ 281 (421)
||||++.++. ..++|++|+ ++|.
T Consensus 188 fHPE~~~~~~--------g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 188 FHPEVGLTEN--------GKVILKNFLYDIAG 211 (218)
T ss_dssp SCTTSTTSTT--------HHHHHHHHHTTTTC
T ss_pred cCCCCCCChh--------HHHHHHHHHHHHhC
Confidence 9999987433 378999999 6653
No 7
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.96 E-value=7.8e-29 Score=228.71 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=132.2
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCC--cCEEEECCCCCCCCCCccccccCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEP--IHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~--~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
|+|+|+.+.++ +...++++|+++|+.+++++++.+.+++.+.+.. .+++||+||+.. |. +..
T Consensus 1 ~~i~iiDn~~s--------~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~-~~---~~~---- 64 (192)
T 1i1q_B 1 ADILLLDNIDS--------FTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGV-PS---EAG---- 64 (192)
T ss_dssp CEEEEEECSCS--------SHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSC-GG---GST----
T ss_pred CcEEEEECCcc--------HHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcC-ch---hCc----
Confidence 68999996543 3456788999999999999987665666554432 457999998741 11 100
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccc
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNY 168 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~ 168 (421)
....+++. ++.++|+||||+|||+|+.++||++.+....+.|
T Consensus 65 -----------------------~~~~l~~~-~~~~~PilGIC~G~Qll~~~~Gg~v~~~~~~~~g-------------- 106 (192)
T 1i1q_B 65 -----------------------CMPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHG-------------- 106 (192)
T ss_dssp -----------------------THHHHHHH-HBTTBCEEEETHHHHHHHHHTSCCCCC---CCSS--------------
T ss_pred -----------------------hHHHHHHH-HhcCCCEEEECcChHHHHHHhCCEEEeCCCcEec--------------
Confidence 12245554 5689999999999999999999988754311121
Q ss_pred cCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 041791 169 ENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMG 248 (421)
Q Consensus 169 ~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~G 248 (421)
....+. ..+++++..+++ .+.++++|++.|..+|++++++|. .|+.++++++.+ .+++|
T Consensus 107 -----~~~~~~-~~~~~l~~~~~~-------~~~v~~~H~~~v~~lp~~~~v~a~-~~~~~~ai~~~~-------~~~~g 165 (192)
T 1i1q_B 107 -----KATSIE-HDGQAMFAGLAN-------PLPVARYHSLVGSNVPAGLTINAH-FNGMVMAVRHDA-------DRVCG 165 (192)
T ss_dssp -----EEEEEE-ECCCGGGTTSCS-------SEEEEECCC---CCCCTTCEEEEE-ETTEEEEEEETT-------TTEEE
T ss_pred -----ceeEEe-cCCChHHhcCCC-------CcEEEechhhHhhhCCCccEEEEC-CCCcEEEEEECC-------CCEEE
Confidence 112222 244567766654 678999999999899999999994 568999999875 68999
Q ss_pred EccccCccCCCCCCCCCCchhhHHHHHHHHHH
Q 041791 249 LQFHPERMRNQDSDNFDYPGCKSAYQEFVKAV 280 (421)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~ 280 (421)
+|||||++.++. ..++|++|++.+
T Consensus 166 vQfHPE~~~~~~--------g~~il~nf~~~~ 189 (192)
T 1i1q_B 166 FQFHPESILTTQ--------GARLLEQTLAWA 189 (192)
T ss_dssp ESSBTTSTTCTT--------HHHHHHHHHHHH
T ss_pred EEccCcccCCcc--------cHHHHHHHHHHH
Confidence 999999986544 378999999865
No 8
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.96 E-value=2.4e-28 Score=247.95 Aligned_cols=184 Identities=25% Similarity=0.378 Sum_probs=140.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
++|+|+... . ...++++|.++|+.++++|++.+.+++.. ..+|||||+||+. +|.
T Consensus 191 ~~V~viD~G-~---------k~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPg-dp~------------ 245 (379)
T 1a9x_B 191 FHVVAYDFG-A---------KRNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPG-DPA------------ 245 (379)
T ss_dssp EEEEEEESS-C---------CHHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSB-CST------------
T ss_pred CEEEEEECC-C---------hHHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCC-ChH------------
Confidence 567777763 1 14588999999999999999877666553 2699999999983 221
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
++..++.+++.+++.++|+||||+|||+|+.++||++++.. +| |.
T Consensus 246 ------------------~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~~---~g----------h~---- 290 (379)
T 1a9x_B 246 ------------------PCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMK---FG----------HH---- 290 (379)
T ss_dssp ------------------TCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEE---EE----------EE----
T ss_pred ------------------HHHHHHHHHHHHHHcCCCEEEECchHHHHHHHhCcEEEecc---cc----------cc----
Confidence 12345688899998899999999999999999999998763 33 11
Q ss_pred CCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccc--cCCCeEEEEEe-CCCeEEEEEeCCCCCCCCCCcEE
Q 041791 171 YDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKK--LAQRFVPMAFA-SDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 171 ~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~--L~~g~~vla~s-~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
+.+|++...+. + ..+.+.++|+++|+. ||+++++++++ +||.||||++++ .+++
T Consensus 291 --g~n~pv~~~~~-------g-------~v~its~~H~~aV~~~~Lp~~~~v~a~s~~Dg~ieai~~~~-------~pi~ 347 (379)
T 1a9x_B 291 --GGNHPVKDVEK-------N-------VVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTD-------KPAF 347 (379)
T ss_dssp --EEEEEEEETTT-------T-------EEEEEEEEEEEEECSTTCCTTEEEEEEETTTCCEEEEEESS-------SSEE
T ss_pred --cCceeeEecCC-------C-------cEEEEecCccceEecccCCCCeEEEEEeCCCCcEEEEEECC-------CCEE
Confidence 12455542211 1 134567899999975 99999999998 799999999986 7899
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYE 284 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~ 284 (421)
|||||||.+..+.. ...+|++|++++.+++
T Consensus 348 gVQFHPE~~~~p~d-------~~~Lf~~Fl~~~~~~~ 377 (379)
T 1a9x_B 348 SFQGNPEASPGPHD-------AAPLFDHFIELIEQYR 377 (379)
T ss_dssp EESSCTTCSSSCST-------TTHHHHHHHHHHHHHH
T ss_pred EEEeCCcCCCCccc-------HHHHHHHHHHHHHHhh
Confidence 99999999874321 3689999999987764
No 9
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.96 E-value=1.1e-28 Score=260.79 Aligned_cols=194 Identities=21% Similarity=0.318 Sum_probs=148.8
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
+..++|+|+...+. |. ..+.++|+++|+.++++|++.+.+.+.+. .+||||||||++ +.|++...
T Consensus 5 ~~~~~IlIlD~g~~-------~~-~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~---s~~~~~~~-- 69 (525)
T 1gpm_A 5 IHKHRILILDFGSQ-------YT-QLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPE---STTEENSP-- 69 (525)
T ss_dssp TTSSEEEEEECSCT-------TH-HHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSS---CTTSTTCC--
T ss_pred CCCCEEEEEECCCc-------cH-HHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCc---cccccCCc--
Confidence 34588999986633 22 45788999999999999998777776653 579999999984 22433211
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecc
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
. .+ +.+++.++|+||||+|||+|+.++||++.+....++|
T Consensus 70 -------------~---~~-----------~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~~~e~G------------- 109 (525)
T 1gpm_A 70 -------------R---AP-----------QYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFG------------- 109 (525)
T ss_dssp -------------C---CC-----------GGGGTSSSCEEEETHHHHHHHHHHTCEEECCSSCEEE-------------
T ss_pred -------------c---hH-----------HHHHHCCCCEEEEChHHHHHHHHcCCEEEeCCCcccc-------------
Confidence 0 11 2234679999999999999999999999876433443
Q ss_pred ccCCCCceeEEEEccCCcchhhccccccc-CceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 041791 168 YENYDGHRHLVKVVEDTPLHQWFRDSLEE-NKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFI 246 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~~s~L~~~~~~~l~~-~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i 246 (421)
++.+.+.+++++++.++..+.. ....+.|+++|++.|..+|++|+++|+++|+.|+|+++++ .++
T Consensus 110 -------~~~v~~~~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~lp~g~~v~A~s~~~~i~ai~~~~-------~~i 175 (525)
T 1gpm_A 110 -------YAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEE-------KRF 175 (525)
T ss_dssp -------EEEEEECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEECCTTCEEEEECSSCSCSEEEETT-------TTE
T ss_pred -------eEEEEeCCCCHhhccCccccccccccceEEEEEccceeeeCCCCCEEEEECCCCCEEEEEECC-------CCE
Confidence 7788887778888877641111 1125789999999999999999999999999999999976 689
Q ss_pred EEEccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 247 MGLQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 247 ~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
+|+|||||+++++.+ .++|++|+.
T Consensus 176 ~gvQFHPE~~~~~~g--------~~ll~nF~~ 199 (525)
T 1gpm_A 176 YGVQFHPEVTHTRQG--------MRMLERFVR 199 (525)
T ss_dssp EEESBCTTSTTSTTH--------HHHHHHHHH
T ss_pred EEEecCCCCCcchhH--------HHHHHHHHH
Confidence 999999999986543 789999995
No 10
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.96 E-value=8.2e-28 Score=229.88 Aligned_cols=192 Identities=24% Similarity=0.308 Sum_probs=143.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
-||+|+-..... + ..++.++++..|+.+++++.+. .+.+++.++.+||||||||+. +.|++..
T Consensus 13 ~~~~~i~~~~~~-~------~~~i~~~l~~~G~~v~v~~~~~-~~~~~~~l~~~Dglil~GG~~---~~~~~~~------ 75 (239)
T 1o1y_A 13 VRVLAIRHVEIE-D------LGMMEDIFREKNWSFDYLDTPK-GEKLERPLEEYSLVVLLGGYM---GAYEEEK------ 75 (239)
T ss_dssp CEEEEECSSTTS-S------CTHHHHHHHHTTCEEEEECGGG-TCCCSSCGGGCSEEEECCCSC---CTTCTTT------
T ss_pred eEEEEEECCCCC-C------chHHHHHHHhCCCcEEEeCCcC-ccccccchhcCCEEEECCCCc---cccCCcc------
Confidence 577777665321 1 1245677888898777777543 233444566899999999971 2344321
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccch-hhhccccCCCceeeecccc
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIE-KEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~-~e~g~~~~~~~~v~H~~~~ 169 (421)
++|+ ..+..+++++++.++|+||||+|||+|+.++||++.+... .++
T Consensus 76 -~~~l---------------~~~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~---------------- 123 (239)
T 1o1y_A 76 -YPFL---------------KYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEI---------------- 123 (239)
T ss_dssp -CTHH---------------HHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEE----------------
T ss_pred -ChhH---------------HHHHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCcc----------------
Confidence 1222 2467889999999999999999999999999999987642 122
Q ss_pred CCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 170 NYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 170 ~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
+|++|...+++++++.+++ .+.++++|++.+ .+|++++++|+++||.++||+++ . ++|+
T Consensus 124 ----G~~~v~~~~~~~l~~~~~~-------~~~~~~~H~~~v-~lp~~~~vlA~s~~~~iea~~~~--------~-i~gv 182 (239)
T 1o1y_A 124 ----GWYFVEKVSDNKFFREFPD-------RLRVFQWHGDTF-DLPRRATRVFTSEKYENQGFVYG--------K-AVGL 182 (239)
T ss_dssp ----EEEEEEECCCCGGGTTSCS-------EEEEEEEESEEE-CCCTTCEEEEECSSCSCSEEEET--------T-EEEE
T ss_pred ----ccEEEEECCCCchHHhCCC-------CceeEeecCCcc-ccCCCCEEEEEcCCCCEEEEEEC--------C-EEEE
Confidence 3788887777888887775 678899999988 79999999999999999999985 3 9999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEK 285 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~ 285 (421)
|||||++. .++++|++...+...
T Consensus 183 QfHPE~~~-------------~~~~~~~~~~~~~~~ 205 (239)
T 1o1y_A 183 QFHIEVGA-------------RTMKRWIEAYKDELE 205 (239)
T ss_dssp SSBSSCCH-------------HHHHHHHHHTHHHHH
T ss_pred EeCccCCH-------------HHHHHHHHHhHHHhh
Confidence 99999863 478889886655433
No 11
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.95 E-value=2.4e-28 Score=258.21 Aligned_cols=193 Identities=21% Similarity=0.312 Sum_probs=142.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
..+|+|+...+. |. ..+.++|+++|+.++++|++.+.+++.+. .+||||||||++ +.|++...
T Consensus 10 ~~~I~IlD~g~~-------~~-~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~--~~dgIILsGGp~---sv~~~~~~---- 72 (527)
T 3tqi_A 10 QHRILILDFGSQ-------YA-QLIARRVREIGVYCELMPCDIDEETIRDF--NPHGIILSGGPE---TVTLSHTL---- 72 (527)
T ss_dssp CSEEEEEECSCT-------TH-HHHHHHHHHHTCEEEEEETTCCSSSSTTT--CCSEEEECCCCC---------------
T ss_pred CCeEEEEECCCc-------cH-HHHHHHHHHCCCeEEEEECCCCHHHHHhc--CCCEEEECCcCc---ccccCCCh----
Confidence 468999987643 22 45678899999999999988776665432 579999999984 22332110
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
.+.+.+++.++|+||||+|||+|+.++||++.+....++|
T Consensus 73 -------------------------~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~~~e~G--------------- 112 (527)
T 3tqi_A 73 -------------------------RAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAKAEFG--------------- 112 (527)
T ss_dssp --------------------------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC-----CEE---------------
T ss_pred -------------------------hhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCCCcccc---------------
Confidence 1112334679999999999999999999999876544444
Q ss_pred CCCCceeEEEEccCCcchhhccccccc-CceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 041791 170 NYDGHRHLVKVVEDTPLHQWFRDSLEE-NKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMG 248 (421)
Q Consensus 170 ~~~~~~h~V~i~~~s~L~~~~~~~l~~-~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~G 248 (421)
++.+.+.+++++++.++..... ....+.++++|++.|..+|++|+++|+++++.++|+++++ .+++|
T Consensus 113 -----~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~lp~g~~v~A~s~~~~i~ai~~~~-------~~~~G 180 (527)
T 3tqi_A 113 -----HAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGFEATACTDNSPLAAMADFK-------RRFFG 180 (527)
T ss_dssp -----EEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCSCCTTCEEEEEETTEEEEEEECSS-------SCEEE
T ss_pred -----ceEEEEcCCChhhcCCccccccccccceEEEEEcccchhccCCCCEEEEEeCCCcEEEEEcCC-------CCEEE
Confidence 7888888777788777541100 0115789999999999999999999999999999999876 68999
Q ss_pred EccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 249 LQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
+|||||+++++.+ ..+|++|+..
T Consensus 181 vQFHPE~~~t~~G--------~~ll~nF~~~ 203 (527)
T 3tqi_A 181 LQFHPEVTHTPQG--------HRILAHFVIH 203 (527)
T ss_dssp ESBCSSSTTSTTH--------HHHHHHHHHT
T ss_pred EEecccccccccc--------chhhhhhhhh
Confidence 9999999987553 6899999853
No 12
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.95 E-value=1.2e-28 Score=259.12 Aligned_cols=183 Identities=22% Similarity=0.356 Sum_probs=141.7
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhH
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEEL 92 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~ 92 (421)
|+|+...+. |. ..+.++|+++|+.++++|++.+.+++.+. .+||||||||++ +.|++...
T Consensus 2 i~ilD~g~~-------~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~---s~~~~~~~------- 61 (503)
T 2ywb_A 2 VLVLDFGSQ-------YT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPR---SVFDPDAP------- 61 (503)
T ss_dssp EEEEESSCT-------TH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSS---CSSCTTCC-------
T ss_pred EEEEECCCc-------HH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCc---hhccCCCc-------
Confidence 677776533 22 55688999999999999998777776543 579999999984 23443211
Q ss_pred HHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCC
Q 041791 93 EEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYD 172 (421)
Q Consensus 93 ~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~ 172 (421)
. .+ +.+++.++|+||||+|||+|+.++||++.+....++|
T Consensus 62 --------~---~~-----------~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~~~e~G------------------ 101 (503)
T 2ywb_A 62 --------R---PD-----------PRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYG------------------ 101 (503)
T ss_dssp --------C---CC-----------GGGGCSSCCEEEETHHHHHHHHTTTCEEECC---CEE------------------
T ss_pred --------c---hH-----------HHHHhCCCCEEEECHHHHHHHHHhCCeEeeCCCCccc------------------
Confidence 0 11 2234679999999999999999999999876544444
Q ss_pred CceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccc
Q 041791 173 GHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFH 252 (421)
Q Consensus 173 ~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFH 252 (421)
++.+.+.+ +++++.+++ .+.++++|++.|..+|++++++|+++|+.++|+++++ .+++|+|||
T Consensus 102 --~~~v~~~~-~~l~~~~~~-------~~~v~~~H~~~v~~lp~g~~v~A~s~~~~i~ai~~~~-------~~~~gvQFH 164 (503)
T 2ywb_A 102 --KALLTRHE-GPLFRGLEG-------EVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPD-------GRAYGVQFH 164 (503)
T ss_dssp --EEECSEEC-SGGGTTCCS-------CCEEEEECSCEEEECCTTCEEEEECSSCSCSEEECTT-------SSEEEESBC
T ss_pred --eEEEEecC-cHHhhcCCC-------ccEEEEECCCccccCCCCCEEEEEECCCCEEEEEeCC-------CCEEEEecC
Confidence 66676666 778887765 5678999999999999999999999999999999976 689999999
Q ss_pred cCccCCCCCCCCCCchhhHHHHHHHHHH
Q 041791 253 PERMRNQDSDNFDYPGCKSAYQEFVKAV 280 (421)
Q Consensus 253 PE~~~~~~~~~~d~~~~~~lf~~Fv~a~ 280 (421)
||+++++. ..++|++|++.|
T Consensus 165 PE~~~~~~--------g~~ll~~F~~~~ 184 (503)
T 2ywb_A 165 PEVAHTPK--------GMQILENFLELA 184 (503)
T ss_dssp TTSTTSTT--------HHHHHHHHHHHT
T ss_pred CCcccccc--------cHHHHHHHHHHh
Confidence 99998654 378999999665
No 13
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.95 E-value=4.5e-28 Score=236.24 Aligned_cols=221 Identities=17% Similarity=0.190 Sum_probs=144.9
Q ss_pred CcEEEEEecc-ccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-hh-----hhhhcCCcCEEEECCCCCCCCCCccc
Q 041791 10 LPRVLIVSRR-TVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-HM-----LLESFEPIHGVLLCEGEDIDPSLYDA 82 (421)
Q Consensus 10 ~P~igI~~~~-~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-~~-----l~~~l~~~DGVIL~GG~didp~~y~~ 82 (421)
.++|+|+..+ ....+.+.+++ ....++....|+.+.++..+... .. +.+.++.+||||||||++- +
T Consensus 8 ~~~Iaivg~y~~~~~dny~S~~-~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~-~----- 80 (273)
T 2w7t_A 8 TVRIAFVGKYLQDAGDTYFSVL-QCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN-R----- 80 (273)
T ss_dssp CEEEEEEECCHHHHTTTTHHHH-HHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT-T-----
T ss_pred CCEEEEEeCCCcCCchHHHHHH-HHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC-c-----
Confidence 3789999766 22223443333 23334445567666666544321 10 2245668999999999631 1
Q ss_pred cccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCccc--ccc-hhhhccccCC
Q 041791 83 ELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLY--QDI-EKEISKNCSL 159 (421)
Q Consensus 83 ~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~--~~~-~~e~g~~~~~ 159 (421)
. ...++.+++++++.++|+||||+|||+|++++||++. ++. +.|++...+
T Consensus 81 -~-------------------------~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~- 133 (273)
T 2w7t_A 81 -G-------------------------VDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKEST- 133 (273)
T ss_dssp -T-------------------------HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCS-
T ss_pred -C-------------------------chhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccC-
Confidence 0 1125678899999999999999999999999999984 333 234431100
Q ss_pred Cce---eeeccc---cCCCCceeEEEEc-cCCcchhhcccccccCceeEEEeccc--cccc-----ccc-CCCeEEEEEe
Q 041791 160 GQR---VVHMNY---ENYDGHRHLVKVV-EDTPLHQWFRDSLEENKMEIMVNSYH--HQGV-----KKL-AQRFVPMAFA 224 (421)
Q Consensus 160 ~~~---v~H~~~---~~~~~~~h~V~i~-~~s~L~~~~~~~l~~~~~~~~V~s~H--~~~V-----~~L-~~g~~vla~s 224 (421)
... +.|... ..+..+|++|.+. ++++++++++. ...++++| ++.| +.+ |++++++|++
T Consensus 134 ~~~l~~~~~~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~~-------~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s 206 (273)
T 2w7t_A 134 HQVVRIMDCDRNKMGANMHLGACDVYIVEKSSIMAKIYSK-------SNIVVERHRHRYEVNTAYFEDLRKAGLCISAVT 206 (273)
T ss_dssp CEEEECCGGGBCSSCBCCEEEEEEEEECCTTSHHHHHTTT-------CSEEEEEEEECCEECGGGHHHHHHTTCEEEEES
T ss_pred CCceeeccccccccCCcccccceEEEEecCCcHHHHHhCC-------CceEEeecccccccCHHHHHhhccCCcEEEEEc
Confidence 000 112211 0123568999986 47888888875 23455544 4444 457 7999999999
Q ss_pred CC----C-eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 041791 225 SD----G-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYE 284 (421)
Q Consensus 225 ~d----g-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~ 284 (421)
+| | .|++|++++ +++++|||||||++.+++. ..++|++|+++|.++.
T Consensus 207 ~d~~~~g~~ieaie~~~------~p~~~GvQfHPE~~~~~~~-------~~~l~~~Fv~~~~~~~ 258 (273)
T 2w7t_A 207 DPTFSSRCRVEAVENPS------LRFFLAVQFHPEFISTPMD-------PAPTYLSFMAAAAKKD 258 (273)
T ss_dssp CTTCCTTCCEEEEECTT------SSSEEEESSCGGGSCBTTB-------CCHHHHHHHHHHHTCC
T ss_pred CCcCCCCCeEEEEEcCC------CCeEEEEeCCCCcCCCCCc-------hHHHHHHHHHHHHHHH
Confidence 88 6 899999986 4678899999999987552 2689999999987543
No 14
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.95 E-value=2.9e-27 Score=251.32 Aligned_cols=203 Identities=20% Similarity=0.273 Sum_probs=142.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
.+|+|+...+.. .....++|+++|+.++++|++.+.+.+.. ..+||||||||+. +.|++...
T Consensus 8 ~~IlilD~Gs~~--------~~~I~r~lre~Gv~~eiv~~~~~~~~i~~--~~~dgIIlsGGp~---s~~~~~~~----- 69 (556)
T 3uow_A 8 DKILVLNFGSQY--------FHLIVKRLNNIKIFSETKDYGVELKDIKD--MNIKGVILSGGPY---SVTEAGSP----- 69 (556)
T ss_dssp CEEEEEESSCTT--------HHHHHHHHHHTTCCEEEEETTCCGGGTTT--SCEEEEEECCCSC---CTTSTTCC-----
T ss_pred CEEEEEECCCcc--------HHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEECCCCC---cccccCCc-----
Confidence 679999876432 23457789999999999998777666543 2689999999983 12332210
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc-
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE- 169 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~- 169 (421)
. . ...+++.+.+.++|+||||+|||+|+.++||++.+....++|.. .+......
T Consensus 70 ----------~---~-------~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~~~E~G~~-----~l~~~~~~~ 124 (556)
T 3uow_A 70 ----------H---L-------KKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCT-----DVNILRNDN 124 (556)
T ss_dssp ----------C---C-------CHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEEEEEEEEE-----EEEECCTTG
T ss_pred ----------c---h-------hHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCCCcccCCc-----ceeeccCcc
Confidence 0 1 12566777788999999999999999999999988765566521 00000000
Q ss_pred --------C-----CCCce--eEEEEccCCcchhhc-ccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEE
Q 041791 170 --------N-----YDGHR--HLVKVVEDTPLHQWF-RDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFY 233 (421)
Q Consensus 170 --------~-----~~~~~--h~V~i~~~s~L~~~~-~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie 233 (421)
. ...+| ..+.....++++..+ ++ .+.++++|++.|..+|++++++|++++|.++|++
T Consensus 125 ~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~-------~~~v~~~H~d~V~~lp~g~~vlA~s~~~~i~ai~ 197 (556)
T 3uow_A 125 INNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSD-------ITTVWMNHNDEVTKIPENFYLVSSSENCLICSIY 197 (556)
T ss_dssp GGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSS-------EEEEEEEEEEEEEECCTTCEEEEEETTEEEEEEE
T ss_pred cccccceecccccccccccccccccccccchhhcccccC-------ceEEEEEccceeeccCCCcEEEEEeCCCCEEEEE
Confidence 0 00000 001111223566655 43 6789999999999999999999999999999999
Q ss_pred eCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHH
Q 041791 234 DPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVK 278 (421)
Q Consensus 234 ~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~ 278 (421)
+++ .+++|+|||||+++++.+ .++|++|+.
T Consensus 198 ~~~-------~~i~GvQFHPE~~~~~~G--------~~ll~nFl~ 227 (556)
T 3uow_A 198 NKE-------YNIYGVQYHPEVYESLDG--------ELMFYNFAY 227 (556)
T ss_dssp ETT-------TTEEEESSCTTSTTSTTH--------HHHHHHHHT
T ss_pred ECC-------CCEEEEEcCCCCCccccc--------hHHHHHHHH
Confidence 976 679999999999987553 688999984
No 15
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.95 E-value=2.1e-27 Score=247.47 Aligned_cols=222 Identities=20% Similarity=0.254 Sum_probs=153.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-h--hhh--hhhcCCcCEEEECCCCCCCCCCcccccc
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-V--HML--LESFEPIHGVLLCEGEDIDPSLYDAELS 85 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~--~~l--~~~l~~~DGVIL~GG~didp~~y~~~~~ 85 (421)
-+|++|.-+..-.+.|.+ +.++...+-.+.++.+.+...+.. . +.. .+.++.+||||||||+.- + .
T Consensus 294 v~IalVGKY~~l~DaY~S-v~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~-~------~- 364 (535)
T 3nva_A 294 INIALVGKYTKLKDSYIS-IKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGS-R------G- 364 (535)
T ss_dssp EEEEEEESCTTSGGGGHH-HHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSS-T------T-
T ss_pred eEEEEEecCcCCchhHHH-HHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCC-c------c-
Confidence 468888776543333332 222333334445666655443221 1 111 346778999999999631 1 0
Q ss_pred CCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcc--cccc-hhhhccccCCCce
Q 041791 86 GFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTL--YQDI-EKEISKNCSLGQR 162 (421)
Q Consensus 86 ~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v--~~~~-~~e~g~~~~~~~~ 162 (421)
...++.++++++++++|+||||+|||+|++++||++ +++. +.|++... .+..
T Consensus 365 ------------------------~~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~-~~pv 419 (535)
T 3nva_A 365 ------------------------AEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNT-KDPV 419 (535)
T ss_dssp ------------------------HHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTC-SCEE
T ss_pred ------------------------HHHHHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCC-CCCe
Confidence 123567889999999999999999999999999999 4554 33554211 1122
Q ss_pred eeeccc--------cCCCCceeEEEEccCCcchhhcccccccC--ceeEEEeccccccccccCCCeEEEEEeCCCeEEEE
Q 041791 163 VVHMNY--------ENYDGHRHLVKVVEDTPLHQWFRDSLEEN--KMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGF 232 (421)
Q Consensus 163 v~H~~~--------~~~~~~~h~V~i~~~s~L~~~~~~~l~~~--~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieai 232 (421)
+.|+.. ..++.+.|++.+.++|.++++|+.....+ ++.+.||+.|++.++ ++|++++|+++||.||||
T Consensus 420 I~~m~eq~~~~~~ggtmrlg~h~v~l~~gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~--~~GL~vsA~s~DG~IEAI 497 (535)
T 3nva_A 420 ITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILE--DAGLVVSGISENGLVEII 497 (535)
T ss_dssp EECBCSSSCBCSSCCCCEEEEEEEEECTTSHHHHHHTSSEEEEEEEECCEECHHHHHHHH--HTTCEEEEECTTCCEEEE
T ss_pred eecchhcccccccCCccccCceEEEEcCCCcHHHHhCCCeeeecccccceechHHHhhcc--cCCeEEEEEeCCCCEEEE
Confidence 333311 13455789999999999999998643222 345678888888876 689999999999999999
Q ss_pred EeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 233 YDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 233 e~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
++++ ++|++|||||||+.+++.. ..++|++|+++|.
T Consensus 498 E~~~------~pf~vGVQfHPE~~~~p~~-------~~~LF~~Fv~Aa~ 533 (535)
T 3nva_A 498 ELPS------NKFFVATQAHPEFKSRPTN-------PSPIYLGFIRAVA 533 (535)
T ss_dssp ECTT------SSCEEEESSCGGGGCCSSS-------CCHHHHHHHHHHT
T ss_pred EeCC------CCcEEEEEeCCEecCCCCC-------hhHHHHHHHHHHH
Confidence 9987 5779999999999876542 3689999999985
No 16
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.94 E-value=4.8e-27 Score=230.79 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=123.1
Q ss_pred cCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 61 FEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 61 l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
++.+||||||||++- + . ...+..+++++++.++||||||+|||+|+.+
T Consensus 88 l~~~dgiil~GG~~~-~------~-------------------------~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a 135 (289)
T 2v4u_A 88 LCKADGILVPGGFGI-R------G-------------------------TLGKLQAISWARTKKIPFLGVXLGMQLAVIE 135 (289)
T ss_dssp HHHCSEEEECSCCSS-T------T-------------------------HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred HhhCCEEEecCCCCc-h------h-------------------------HHHHHHHHHHHHHcCCcEEEECccHHHHHHH
Confidence 567999999999631 1 0 0235678899999999999999999999999
Q ss_pred hCCccc--ccc-hhhhccccCCCce-e----eeccc---cCCCCceeEEEEc-cCCcchhhcccccccCceeEEEecccc
Q 041791 141 CGGTLY--QDI-EKEISKNCSLGQR-V----VHMNY---ENYDGHRHLVKVV-EDTPLHQWFRDSLEENKMEIMVNSYHH 208 (421)
Q Consensus 141 ~GG~v~--~~~-~~e~g~~~~~~~~-v----~H~~~---~~~~~~~h~V~i~-~~s~L~~~~~~~l~~~~~~~~V~s~H~ 208 (421)
+||++. ++. ..|++... ... + .|... ..+..++++|.+. ++++++++++. .+.++++|+
T Consensus 136 ~Gg~v~~~~~~~~~e~~~~~--~~~~i~~~~~h~~~~~~~~~~~g~~~v~~~~~~s~l~~~~~~-------~~~v~~~H~ 206 (289)
T 2v4u_A 136 FARNCLNLKDADSTEFRPNA--PVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGD-------VPFIEERHR 206 (289)
T ss_dssp HHHHHSCCTTEEESTTCTTC--SEEEEEECCBCCTTCSSCBCEEEEEEEEESCSCCHHHHHTTS-------CSEEEEEEE
T ss_pred HhccccccccCcccccCccc--cccceecchhhcccccCCccccceEEEEEecCCCHHHHhcCC-------CceEEEecc
Confidence 999985 333 22343110 001 1 12210 1122357889987 68889988875 245666665
Q ss_pred -------ccccccC-CCeEEEEEeCCCe-EEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHH
Q 041791 209 -------QGVKKLA-QRFVPMAFASDGL-IEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKA 279 (421)
Q Consensus 209 -------~~V~~L~-~g~~vla~s~dg~-ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a 279 (421)
+.|+.|| ++++++|+++||. ||||++++ +++++|||||||++.++.. ..++|++|+++
T Consensus 207 H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~------~p~~lGvQfHPE~~~~~~~-------~~~lf~~Fv~~ 273 (289)
T 2v4u_A 207 HRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELAN------HPYFVGVQFHPEFSSRPMK-------PSPPYLGLLLA 273 (289)
T ss_dssp ECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESS------SSCEEEESSBGGGGCBTTB-------CCHHHHHHHHH
T ss_pred cccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCC------CCeEEEEECCCCCCCCCCc-------hHHHHHHHHHH
Confidence 6677899 9999999999997 99999986 3567799999999875432 26899999998
Q ss_pred HHHHHH
Q 041791 280 VIAYEK 285 (421)
Q Consensus 280 ~~~~~~ 285 (421)
|.+...
T Consensus 274 ~~~~~~ 279 (289)
T 2v4u_A 274 ATGNLN 279 (289)
T ss_dssp HHTCHH
T ss_pred HHhhhh
Confidence 876544
No 17
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.94 E-value=5.5e-27 Score=254.53 Aligned_cols=183 Identities=23% Similarity=0.323 Sum_probs=135.3
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
.++|+|+...+. +.+ ...+.|+++|+.++++|++.+.+++.. ..+||||||||++ +.|+++..
T Consensus 29 ~~~I~VLDfg~q----~~~----liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~---s~~~~~~~---- 91 (697)
T 2vxo_A 29 EGAVVILDAGAQ----YGK----VIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPN---SVYAEDAP---- 91 (697)
T ss_dssp CCCEEEEEEC------CHH----HHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC----------CC----
T ss_pred CCEEEEEECCCc----hHH----HHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCC---cccCccch----
Confidence 356777766542 122 235789999999999999887776653 3799999999985 23433221
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
..+ +.+++.++|+||||+|||+|+.++||++.+....++|
T Consensus 92 --------------~~~-----------~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~G--------------- 131 (697)
T 2vxo_A 92 --------------WFD-----------PAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDG--------------- 131 (697)
T ss_dssp --------------CCC-----------GGGTTSSCCEEEEEHHHHHHHHHTTCCBCC----------------------
T ss_pred --------------hHH-----------HHHHhCCCCEEEECHHHHHHHHHhCCeEeecCCCccc---------------
Confidence 011 1123578999999999999999999999876433443
Q ss_pred CCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEE
Q 041791 170 NYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGL 249 (421)
Q Consensus 170 ~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~Gv 249 (421)
++.+.+.+++++++.+++ .+.++++|++.|..+|++|+++|+++ +.++|+++++ .+++|+
T Consensus 132 -----~~~v~~~~~~~Lf~~l~~-------~~~v~~~H~~~V~~lp~g~~vlA~s~-~~i~ai~~~~-------~~i~Gv 191 (697)
T 2vxo_A 132 -----VFNISVDNTCSLFRGLQK-------EEVVLLTHGDSVDKVADGFKVVARSG-NIVAGIANES-------KKLYGA 191 (697)
T ss_dssp -----CEEEEECTTSGGGTTCCS-------EEEECCCSSCCBSSCCTTCEEEEEET-TEEEEEEETT-------TTEEEE
T ss_pred -----eEEEEecCCChhhhcCCc-------cCcceeecccceecCCCCeEEEEEeC-CceEEEEeCC-------CCEEEE
Confidence 788888878889888875 57899999999999999999999995 4999999986 789999
Q ss_pred ccccCccCCCCCCCCCCchhhHHHHHHH
Q 041791 250 QFHPERMRNQDSDNFDYPGCKSAYQEFV 277 (421)
Q Consensus 250 QFHPE~~~~~~~~~~d~~~~~~lf~~Fv 277 (421)
|||||+++++.+ ..+|++|+
T Consensus 192 QFHPE~~~t~~g--------~~ll~nFl 211 (697)
T 2vxo_A 192 QFHPEVGLTENG--------KVILKNFL 211 (697)
T ss_dssp SSCTTSSSSTTH--------HHHHHHHH
T ss_pred EecccCCCCccc--------hhhhhhhh
Confidence 999999876543 78999998
No 18
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.94 E-value=4.3e-26 Score=219.78 Aligned_cols=176 Identities=18% Similarity=0.159 Sum_probs=129.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+++|+|+...... -..++.+++++.|+.+.++....+ +.++..++.+|||||+||+. ++ |++.
T Consensus 3 ~~~vliiqh~~~e-------~~~~i~~~l~~~G~~v~v~~~~~~-~~~p~~~~~~d~lIl~GGp~-~~--~d~~------ 65 (250)
T 3m3p_A 3 LKPVMIIQFSASE-------GPGHFGDFLAGEHIPFQVLRMDRS-DPLPAEIRDCSGLAMMGGPM-SA--NDDL------ 65 (250)
T ss_dssp CCCEEEEESSSSC-------CCHHHHHHHHHTTCCEEEEEGGGT-CCCCSCGGGSSEEEECCCSS-CT--TSCC------
T ss_pred CCeEEEEECCCCC-------CHHHHHHHHHHCCCeEEEEeccCC-CcCcCccccCCEEEECCCCC-cc--cccc------
Confidence 4567777654321 123456778999998888774322 11233345799999999983 11 2211
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecccc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYE 169 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~ 169 (421)
+|+ ..+.++++.+++.++|+||||+|+|+|+.++||++.+....++|
T Consensus 66 ---~~~---------------~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G--------------- 112 (250)
T 3m3p_A 66 ---PWM---------------PTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIG--------------- 112 (250)
T ss_dssp ---TTH---------------HHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEE---------------
T ss_pred ---hHH---------------HHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCCCcee---------------
Confidence 111 23567889999999999999999999999999999887533343
Q ss_pred CCCCceeEEEEccC---CcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcE
Q 041791 170 NYDGHRHLVKVVED---TPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFI 246 (421)
Q Consensus 170 ~~~~~~h~V~i~~~---s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i 246 (421)
|++|.+.++ ++++ .+++ .+.|+++|++.| .+|++++++|++++|.++||++++ ++
T Consensus 113 -----~~~v~~~~~~~~~~l~-g~~~-------~~~v~~~H~~~v-~lp~~~~vlA~s~~~~~~a~~~~~--------~~ 170 (250)
T 3m3p_A 113 -----WVRAWPQHVPQALEWL-GTWD-------ELELFEWHYQTF-SIPPGAVHILRSEHCANQAYVLDD--------LH 170 (250)
T ss_dssp -----EEEEEECSSHHHHHHH-SCSS-------CEEEEEEEEEEE-CCCTTEEEEEEETTEEEEEEEETT--------TE
T ss_pred -----eEEEEEecCCCCcccc-cCCC-------ccEEEEEcccee-ecCCCCEEEEEeCCCCEEEEEECC--------ee
Confidence 888888754 3454 3333 688999999999 799999999999999999999974 59
Q ss_pred EEEccccCccC
Q 041791 247 MGLQFHPERMR 257 (421)
Q Consensus 247 ~GvQFHPE~~~ 257 (421)
+|+|||||++.
T Consensus 171 ~GvQfHPE~~~ 181 (250)
T 3m3p_A 171 IGFQCHIEMQA 181 (250)
T ss_dssp EEESSCTTCCH
T ss_pred EEEEeCCcCCH
Confidence 99999999874
No 19
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.94 E-value=3.6e-26 Score=241.25 Aligned_cols=226 Identities=21% Similarity=0.221 Sum_probs=145.7
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC---hhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG---VHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~---~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
.++|+++..+..-.+.+.++ .+...++....|+.+.+++.+.+ ++.+.+.++.+||||||||+. +|.
T Consensus 300 ~v~I~ivgkyv~l~D~y~Sv-~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfG-d~~-------- 369 (550)
T 1vco_A 300 TVKIAIAGKYVKMPDAYLSL-LEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFG-VRG-------- 369 (550)
T ss_dssp EEEEEEEESCC---CTTHHH-HHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCS-STT--------
T ss_pred ceEEcccCCeEEEEecHHHH-HHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCC-Ccc--------
Confidence 36778777654322333232 23344455566777777654432 123445577899999999963 110
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccc---hhhhccccCCCcee
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDI---EKEISKNCSLGQRV 163 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~---~~e~g~~~~~~~~v 163 (421)
...++.++++++++++|+||||+|||+|++++||++.+.. +.|++... .+..+
T Consensus 370 -----------------------~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~-~hpvi 425 (550)
T 1vco_A 370 -----------------------IEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHT-PHPVI 425 (550)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTC-SCEEE
T ss_pred -----------------------hhhhHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccCCccccccccCCC-CCCeE
Confidence 0124678899999999999999999999999999887532 22443111 01111
Q ss_pred eecc--------ccCCCCceeEEEEccCCcchhhccccccc--CceeEEEeccccccccccCCCeEEEEEeCCC------
Q 041791 164 VHMN--------YENYDGHRHLVKVVEDTPLHQWFRDSLEE--NKMEIMVNSYHHQGVKKLAQRFVPMAFASDG------ 227 (421)
Q Consensus 164 ~H~~--------~~~~~~~~h~V~i~~~s~L~~~~~~~l~~--~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg------ 227 (421)
.++. ...+..+|+++.+.+++.+..+|+..... ..+.+.||++|++.+. +.+++++|++.||
T Consensus 426 ~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~~~~v~e~h~H~Y~Vns~~~~~l~--~~gl~v~a~s~dG~g~~~~ 503 (550)
T 1vco_A 426 DLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLE--RAGLVVSATTPGMRGRGAG 503 (550)
T ss_dssp EESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHHHHHH--HHTEEEEEECCCBTTBSTT
T ss_pred EeccccccccccCCcccccceEEEEccCchhhHhcCCceeeeeccceEEEchHHhhccc--cCCeEEEEEeCCCCccCCC
Confidence 1111 01233468999998888888888653110 1233455555554432 3789999999885
Q ss_pred eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 041791 228 LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYE 284 (421)
Q Consensus 228 ~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~ 284 (421)
.||+|++++ +++++|||||||++.++.. ..++|++|++++.+++
T Consensus 504 ~VeaIe~~~------~p~fvGVQFHPE~~~~p~~-------g~~LF~~Fv~aa~~~~ 547 (550)
T 1vco_A 504 LVEAIELKD------HPFFLGLQSHPEFKSRPMR-------PSPPFVGFVEAALAYQ 547 (550)
T ss_dssp CEEEEEETT------SSSEEEESSCGGGGCBTTB-------CCHHHHHHHHHHHHHT
T ss_pred cEEEEEeCC------CCEEEEEEeCCccCCCCCC-------hHHHHHHHHHHHHhhc
Confidence 899999987 3555699999999987542 3799999999987764
No 20
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.93 E-value=1.6e-25 Score=213.37 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=133.9
Q ss_pred HHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHH
Q 041791 33 YHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTI 112 (421)
Q Consensus 33 ~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~ 112 (421)
.+.+++...|+.+.+++...+ +.+++.++.+|||||+||+. +|..... +++|+ +...
T Consensus 16 ~~~~~l~~~g~~~~~~~~~~~-~~~p~~~~~~d~lii~GGp~-~~~~~~~--------~~~~~-------------~~~~ 72 (236)
T 3l7n_A 16 AYLAWAALRGHDVSMTKVYRY-EKLPKDIDDFDMLILMGGPQ-SPSSTKK--------EFPYY-------------DAQA 72 (236)
T ss_dssp HHHHHHHHTTCEEEEEEGGGT-CCCCSCGGGCSEEEECCCSS-CTTCCTT--------TCTTC-------------CHHH
T ss_pred HHHHHHHHCCCeEEEEeeeCC-CCCCCCccccCEEEECCCCC-Ccccccc--------cCccc-------------chHH
Confidence 455778899999887765332 22333356799999999984 2211011 11121 1123
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCCCCceeEEEEcc---CCcchhh
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVVE---DTPLHQW 189 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~---~s~L~~~ 189 (421)
+.++++.+++.++|+||||+|||+|+.++||++.+....++ +|++|.+.. .++++..
T Consensus 73 ~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~--------------------G~~~v~~~~~~~~~~l~~~ 132 (236)
T 3l7n_A 73 EVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEI--------------------GNYLISLTEAGKMDSYLSD 132 (236)
T ss_dssp HHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEE--------------------EEEEEEECTTGGGCGGGTT
T ss_pred HHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCCcee--------------------eeEEEEEccCcccChHHhc
Confidence 56889999999999999999999999999999887643333 378888876 4678777
Q ss_pred cccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchh
Q 041791 190 FRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGC 269 (421)
Q Consensus 190 ~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~ 269 (421)
++. .+.++++|++. ..+|++++++|++++|.++++++. .+++|+|||||++
T Consensus 133 ~~~-------~~~v~~~H~~~-~~lp~~~~vla~s~~~~~~a~~~~--------~~v~gvQfHPE~~------------- 183 (236)
T 3l7n_A 133 FSD-------DLLVGHWHGDM-PGLPDKAQVLAISQGCPRQIIKFG--------PKQYAFQCHLEFT------------- 183 (236)
T ss_dssp SCS-------EEEEEEEEEEE-CCCCTTCEEEEECSSCSCSEEEEE--------TTEEEESSBSSCC-------------
T ss_pred CCC-------CcEEEEecCCc-ccCCChheEEEECCCCCEEEEEEC--------CCEEEEEeCCCCC-------------
Confidence 765 68899999986 579999999999999999999986 4799999999986
Q ss_pred hHHHHHHHHHHHHH
Q 041791 270 KSAYQEFVKAVIAY 283 (421)
Q Consensus 270 ~~lf~~Fv~a~~~~ 283 (421)
..++++|++.+...
T Consensus 184 ~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 184 PELVAALIAQEDDL 197 (236)
T ss_dssp HHHHHHHHHHCSCH
T ss_pred HHHHHHHHHhhhhh
Confidence 35788998876543
No 21
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.93 E-value=8.6e-26 Score=238.15 Aligned_cols=219 Identities=20% Similarity=0.262 Sum_probs=145.8
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCe---EEEEcCCCChhhhh----hhcCCcCEEEECCCCCCCCCCccc
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV---PVIVPRVTGVHMLL----ESFEPIHGVLLCEGEDIDPSLYDA 82 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~---~vivp~~~~~~~l~----~~l~~~DGVIL~GG~didp~~y~~ 82 (421)
.+.|+++..+..-. | .-.+++++|..+|+. .|.+.|.. .+++. +.+..+||||||||+. +|.
T Consensus 289 ~v~i~~vGkyv~l~----D-~y~Si~~aL~~~G~~~~~~V~i~~~d-~e~i~~~~~~~l~~~DGIilsGGpg-~~~---- 357 (545)
T 1s1m_A 289 EVTIGMVGKYIELP----D-AYKSVIEALKHGGLKNRVSVNIKLID-SQDVETRGVEILKGLDAILVPGGFG-YRG---- 357 (545)
T ss_dssp EEEEEEEESSCSSG----G-GGHHHHHHHHHHHHHHTEEEEEEEEE-HHHHHHHCTTTTTTCSEEEECCCCS-STT----
T ss_pred eEEeCCcCCeEEEE----E-HHHHHHHHHHHhCcccCCeEEEccCC-HHHhhhhhhhhhhcCCEEEECCCCC-Ccc----
Confidence 35677766543211 1 113567788887763 33333332 22322 3467899999999973 111
Q ss_pred cccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccc---hhhhccccCC
Q 041791 83 ELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDI---EKEISKNCSL 159 (421)
Q Consensus 83 ~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~---~~e~g~~~~~ 159 (421)
...++.+++++++.++|+||||+|||+|++++||++.+.. +.|++....
T Consensus 358 ---------------------------~~g~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~- 409 (545)
T 1s1m_A 358 ---------------------------VEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCK- 409 (545)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCS-
T ss_pred ---------------------------chhhHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCCCCcccccCCCCC-
Confidence 0224578899999999999999999999999999987532 234432111
Q ss_pred Cceeeec----------c--------ccCCCCceeEEEEccCCcchhhcccccccCceeEEEecccccccc-----cc-C
Q 041791 160 GQRVVHM----------N--------YENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVK-----KL-A 215 (421)
Q Consensus 160 ~~~v~H~----------~--------~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~-----~L-~ 215 (421)
+..+.+. . ...++.++|++.+.+++.+..+|+.. .+..++.|++.|+ .+ +
T Consensus 410 hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~------~v~e~h~Hry~VNs~~~~~l~~ 483 (545)
T 1s1m_A 410 YPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAP------TIVERHRHRYEVNNMLLKQIED 483 (545)
T ss_dssp CEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSS------EEEEEEEECCEECHHHHHHHHH
T ss_pred CceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhcCCc------eEEEecCcceEEChHHhhhccc
Confidence 1111111 0 01123468899998999888888763 3333445555542 23 4
Q ss_pred CCeEEEEEeCCC-eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 041791 216 QRFVPMAFASDG-LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEKK 286 (421)
Q Consensus 216 ~g~~vla~s~dg-~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~~ 286 (421)
.+++++|+++|| .||+|++++ +++++|||||||+.+++.. ..++|++|++++.+++++
T Consensus 484 ~gl~v~a~s~dg~~VEaie~~~------~p~flGVQFHPE~~~~p~~-------g~~LF~~Fv~aa~~~~~~ 542 (545)
T 1s1m_A 484 AGLRVAGRSGDDQLVEIIEVPN------HPWFVACQFHPEFTSTPRD-------GHPLFAGFVKAASEFQKR 542 (545)
T ss_dssp TTCEEEEECSSSCCEEEEECTT------SSSEEEESSCGGGTCCTTT-------CCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCceEEEEeCC------CCEEEEEeCCCCCCCCCCC-------hHHHHHHHHHHHHHHHhh
Confidence 899999999998 899999987 4667799999999887542 379999999999887754
No 22
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.1e-25 Score=206.04 Aligned_cols=182 Identities=20% Similarity=0.232 Sum_probs=119.5
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChhh
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPEE 91 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e~ 91 (421)
+|+|+...+ .+. +|+++|+++|+.+++++. .+ .++.+||||||||++ +.|++
T Consensus 2 ~i~vl~~~g----~~~-----~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~---~~~~~--------- 53 (186)
T 2ywj_A 2 IIGVLAIQG----DVE-----EHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGES---TAIGK--------- 53 (186)
T ss_dssp EEEEECSSS----CCH-----HHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCH---HHHHH---------
T ss_pred EEEEEecCc----chH-----HHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCc---hhhhh---------
Confidence 688887542 222 467899999999998873 22 345799999999973 11211
Q ss_pred HHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccCC
Q 041791 92 LEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYENY 171 (421)
Q Consensus 92 ~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~~ 171 (421)
+. +.++.. +.++ +.++|+||||+|||+|+.++||++ +. +|. .+..+.+... .+
T Consensus 54 ~~-------------~~~~~~--~~i~---~~~~PilGIC~G~Qll~~~~gg~~-~~----lg~---~~~~~~~~~~-~~ 106 (186)
T 2ywj_A 54 LM-------------KKYGLL--EKIK---NSNLPILGTCAGMVLLSKGTGINQ-IL----LEL---MDITVKRNAY-GR 106 (186)
T ss_dssp HH-------------HHTTHH--HHHH---TCCCCEEEETHHHHHHSSCCSSCC-CC----CCC---SSEEEETTTT-CS
T ss_pred hh-------------hccCHH--HHHH---hcCCcEEEECHHHHHHHHHhCCCc-Cc----cCC---CceeEEeccC-CC
Confidence 10 111221 2233 789999999999999999999984 22 220 0011111110 00
Q ss_pred CCceeEEEEccCCcchhhcccccccCceeEEEecccccccccc-CCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 041791 172 DGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKL-AQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQ 250 (421)
Q Consensus 172 ~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L-~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQ 250 (421)
....+... .++..+ . .+.++++|++.|+.+ |++++++|++ |+.++|+++ ++++|+|
T Consensus 107 ~~~~~~~~-----~~~~~~-~-------~~~~~~~H~~~v~~l~~~~~~v~a~s-d~~~~a~~~---------~~~~gvQ 163 (186)
T 2ywj_A 107 QVDSFEKE-----IEFKDL-G-------KVYGVFIRAPVVDKILSDDVEVIARD-GDKIVGVKQ---------GKYMALS 163 (186)
T ss_dssp SSCCEEEE-----EEETTT-E-------EEEEEESSCCEEEEECCTTCEEEEEE-TTEEEEEEE---------TTEEEES
T ss_pred cccceecc-----cccccC-C-------cEEEEEEecceeeecCCCCeEEEEEE-CCEEEEEee---------CCEEEEE
Confidence 01112111 111112 2 677899999999889 9999999999 899999986 4699999
Q ss_pred cccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 251 FHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
||||++.. ..++|++|+++|+
T Consensus 164 fHPE~~~~----------g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 164 FHPELSED----------GYKVYKYFVENCV 184 (186)
T ss_dssp SCGGGSTT----------HHHHHHHHHHHHT
T ss_pred CCCCcCCc----------hhHHHHHHHHHHh
Confidence 99998752 2789999999874
No 23
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.93 E-value=3.1e-25 Score=206.43 Aligned_cols=202 Identities=20% Similarity=0.208 Sum_probs=136.9
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+++|+|+....... ...++++++.+|+.+++++... .++.+||||||||.+..... ..
T Consensus 2 ~~~i~il~~~~~~~-------~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~-~~------- 59 (213)
T 3d54_D 2 KPRACVVVYPGSNC-------DRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYL-RP------- 59 (213)
T ss_dssp CCEEEEECCTTEEE-------HHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCS-ST-------
T ss_pred CcEEEEEEcCCCCc-------cHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhh-cc-------
Confidence 47899997664321 0235788999999999987531 24579999999997421110 00
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH--hCCcccccchhhhccccCCCceeeecc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA--CGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava--~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
+.+ .++..+..+++.+.+.++|+||||+|+|+|+.+ ++|++.+... + . .|
T Consensus 60 ~~~---------------~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~---~-------~-~~-- 111 (213)
T 3d54_D 60 GAV---------------AAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSS---G-------K-FI-- 111 (213)
T ss_dssp THH---------------HHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSS---S-------S-CB--
T ss_pred ccc---------------cccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCC---C-------c-eE--
Confidence 000 111224577888888999999999999999999 7777654321 0 0 02
Q ss_pred ccCCCCceeEEEEc-cCCcchhhcccccccCceeEEEeccccccccc-cCCCeEEEEEeCC--C---eEEEEEeCCCCCC
Q 041791 168 YENYDGHRHLVKVV-EDTPLHQWFRDSLEENKMEIMVNSYHHQGVKK-LAQRFVPMAFASD--G---LIEGFYDPDAYNP 240 (421)
Q Consensus 168 ~~~~~~~~h~V~i~-~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~-L~~g~~vla~s~d--g---~ieaie~~~~~~~ 240 (421)
.+|+.|.+. +++++++.+++. ..+.++++|+++... .|+++.++|+++| | .|+|+++++
T Consensus 112 -----~g~~~v~~~~~~~~l~~~~~~~-----~~~~~~~~H~~~s~~~~~~~~~~~a~~~~~ng~~~~i~a~~~~~---- 177 (213)
T 3d54_D 112 -----CKWVDLIVENNDTPFTNAFEKG-----EKIRIPIAHGFGRYVKIDDVNVVLRYVKDVNGSDERIAGVLNES---- 177 (213)
T ss_dssp -----CCEEEEEECCCSSTTSTTSCTT-----CEEEEECCBSSCEEECSSCCEEEEEESSCSSCCGGGEEEEECSS----
T ss_pred -----eeeEEEEeCCCCCceeeccCCC-----CEEEEEeecCceEEEecCCCcEEEEEcCCCCCCccceeEEEcCC----
Confidence 348999987 578888877631 256778899542111 2588999999876 5 899999865
Q ss_pred CCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 241 QEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 241 ~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
.+++|+|||||++...... .+...++|++|+++|+
T Consensus 178 ---~~~~gvQfHPE~~~~~~~~---~~~g~~l~~~f~~~~~ 212 (213)
T 3d54_D 178 ---GNVFGLMPHPERAVEELIG---GEDGKKVFQSILNYLK 212 (213)
T ss_dssp ---SCEEEECSCSTTTTSTTTT---CSTTSHHHHHHHHHCC
T ss_pred ---CCEEEEeCCHHHhcCHhhh---cCccHHHHHHHHHHhh
Confidence 7899999999998732100 0113689999998763
No 24
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.93 E-value=3.6e-25 Score=208.45 Aligned_cols=193 Identities=17% Similarity=0.173 Sum_probs=129.7
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGF 87 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~ 87 (421)
+.+++|+|+.... .+. .++++|+++|+.+++++.. + .++.+||||||||++ ..|+
T Consensus 21 ~~~~~I~il~~~~----~~~-----~~~~~l~~~G~~~~~~~~~---~----~l~~~Dglil~GG~~---~~~~------ 75 (219)
T 1q7r_A 21 QSNMKIGVLGLQG----AVR-----EHVRAIEACGAEAVIVKKS---E----QLEGLDGLVLPGGES---TTMR------ 75 (219)
T ss_dssp CCCCEEEEESCGG----GCH-----HHHHHHHHTTCEEEEECSG---G----GGTTCSEEEECCCCH---HHHH------
T ss_pred CCCCEEEEEeCCC----CcH-----HHHHHHHHCCCEEEEECCH---H----HHhhCCEEEECCCCh---HHHH------
Confidence 3457899996532 121 3678999999999988742 2 245799999999963 1111
Q ss_pred ChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecc
Q 041791 88 APEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 88 ~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
++ .++..+.++++++.+.++|+||||+|||+|+.++||++.++.. .+. ..+.+..
T Consensus 76 ---~~---------------~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~~lg-~~~------~~~~~~~ 130 (219)
T 1q7r_A 76 ---RL---------------IDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLG-LMD------ITVERNS 130 (219)
T ss_dssp ---HH---------------HHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCCCCCC-CEE------EEEECHH
T ss_pred ---HH---------------hhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCcCCcC-ccc------eEEEecC
Confidence 11 1122235788999999999999999999999999998754331 010 0011110
Q ss_pred ccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 041791 168 YENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
. .+....+...+ .+ ..++. .+.++.+|++.|+.+|++++++|++ |+.++|+++ ++++
T Consensus 131 ~-g~~~~~~~~~~----~~-~g~g~-------~~~~~~~h~~~v~~l~~~~~v~a~s-dg~~ea~~~---------~~i~ 187 (219)
T 1q7r_A 131 F-GRQRESFEAEL----SI-KGVGD-------GFVGVFIRAPHIVEAGDGVDVLATY-NDRIVAARQ---------GQFL 187 (219)
T ss_dssp H-HCCCCCEEEEE----EE-TTTEE-------EEEEEESSCCEEEEECTTCEEEEEE-TTEEEEEEE---------TTEE
T ss_pred C-CccccceecCc----cc-CCCCC-------ceEEEEEecceeeccCCCcEEEEEc-CCEEEEEEE---------CCEE
Confidence 0 00011121111 11 12332 6778889999998899999999998 899999997 3699
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYE 284 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~ 284 (421)
|+|||||++.. ..+|++|+++|.+++
T Consensus 188 GvQfHPE~~~~-----------~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 188 GCSFHPELTDD-----------HRLMQYFLNMVKEAK 213 (219)
T ss_dssp EESSCGGGSSC-----------CHHHHHHHHHHHHHH
T ss_pred EEEECcccCCC-----------HHHHHHHHHHHHHhh
Confidence 99999998741 479999999987654
No 25
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.93 E-value=4.3e-25 Score=237.85 Aligned_cols=189 Identities=17% Similarity=0.192 Sum_probs=138.6
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
++|+|+...+. ....+.+++.+.|+.+++++++...+ +..+|||||+||+. +|. +..
T Consensus 447 k~IlviD~gds--------f~~~l~~~l~~~G~~v~Vv~~d~~~~-----~~~~DgIIlsGGPg-~p~--d~~------- 503 (645)
T 3r75_A 447 CRALIVDAEDH--------FTAMIAQQLSSLGLATEVCGVHDAVD-----LARYDVVVMGPGPG-DPS--DAG------- 503 (645)
T ss_dssp CEEEEEESSCT--------HHHHHHHHHHHTTCEEEEEETTCCCC-----GGGCSEEEECCCSS-CTT--CTT-------
T ss_pred CEEEEEECCcc--------HHHHHHHHHHHCCCEEEEEECCCccc-----ccCCCEEEECCCCC-Chh--hhh-------
Confidence 47888877644 22456778899999999999876422 23689999999983 221 111
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
.+|+ ..+..+++++++.++||||||+|||+|+.++||++.+......|
T Consensus 504 -~p~i---------------~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~~~~G---------------- 551 (645)
T 3r75_A 504 -DPRI---------------ARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREVPNQG---------------- 551 (645)
T ss_dssp -SHHH---------------HHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEE----------------
T ss_pred -hhhH---------------HHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCCcccc----------------
Confidence 1222 22457889999999999999999999999999999875422222
Q ss_pred CCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 041791 171 YDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQ 250 (421)
Q Consensus 171 ~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQ 250 (421)
..+.+.+. +++++..... .+.++++|.+.+..+|++++++|+++||.|++|+++ +++|||
T Consensus 552 ---~~~~i~~~-~~~l~~~~~~-------~~~v~~~h~~~~~~lp~g~~v~A~s~dg~i~Ai~~~---------~~~GVQ 611 (645)
T 3r75_A 552 ---IQVEIDLF-GQRERVGFYN-------TYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGP---------TFSSMQ 611 (645)
T ss_dssp ---EEEEEEET-TEEEEEEEEE-------EEEEBCSCSEEEETTTEEEEEEECTTTCBEEEEEET---------TEEEES
T ss_pred ---cceEEeee-cCcceecCCC-------cEEEEEehhhccccCCCCeEEEEEcCCCcEEEEEcC---------CEEEEE
Confidence 23444443 3344443333 677888887777679999999999999999999985 379999
Q ss_pred cccCccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 041791 251 FHPERMRNQDSDNFDYPGCKSAYQEFVKAVIA 282 (421)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~ 282 (421)
||||+..+..+ .++|++|++.+..
T Consensus 612 FHPE~~~t~~G--------~~Ll~nFl~~~~~ 635 (645)
T 3r75_A 612 FHAESVLTVDG--------PRILGEAITHAIR 635 (645)
T ss_dssp SBTTSTTCTTH--------HHHHHHHHHHHTT
T ss_pred eCCeecCCcch--------HHHHHHHHHHHHh
Confidence 99999876553 7999999998854
No 26
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.93 E-value=3.3e-26 Score=213.35 Aligned_cols=201 Identities=18% Similarity=0.135 Sum_probs=125.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
..|+|+.-... ++ .+..++|+++|+.++++. +++++. .+||||||||.+. .+.
T Consensus 3 ~~I~iiD~g~~-------n~-~si~~al~~~G~~~~v~~---~~~~l~----~~D~lilPG~g~~-----~~~------- 55 (211)
T 4gud_A 3 QNVVIIDTGCA-------NI-SSVKFAIERLGYAVTISR---DPQVVL----AADKLFLPGVGTA-----SEA------- 55 (211)
T ss_dssp CCEEEECCCCT-------TH-HHHHHHHHHTTCCEEEEC---CHHHHH----HCSEEEECCCSCH-----HHH-------
T ss_pred CEEEEEECCCC-------hH-HHHHHHHHHCCCEEEEEC---CHHHHh----CCCEEEECCCCCH-----HHH-------
Confidence 35777754321 12 356788999999998874 455544 5899999996531 110
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeec---c
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHM---N 167 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~---~ 167 (421)
+.+ ..+..+++.+++.++|+||||+|||+|+.++|+++.+......+-.. -...+.+. .
T Consensus 56 -~~~----------------~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~-~~~~v~~~~~~~ 117 (211)
T 4gud_A 56 -MKN----------------LTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGL-VDGEVRLLQTGD 117 (211)
T ss_dssp -HHH----------------HHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----CCCEECCCS-SSCEEEECCCTT
T ss_pred -HHH----------------HHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCcccccCCcccccee-ccceEEEcccCC
Confidence 111 11224566777899999999999999999999987654321111000 00111111 1
Q ss_pred ccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 041791 168 YENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
......+|..+.....+++++.++. ...++.+|++.+ +.+..++|++++|.+.+..+.+ ++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~H~~~v---~~~~~~~a~~~~g~~~~~~v~~-------~~v~ 180 (211)
T 4gud_A 118 LPLPHMGWNTVQVKEGHPLFNGIEP-------DAYFYFVHSFAM---PVGDYTIAQCEYGQPFSAAIQA-------GNYY 180 (211)
T ss_dssp SCSSEEEEECCEECTTCGGGTTCCT-------TCCEEEEESEEC---CCCTTEEEEEESSSEEEEEEEE-------TTEE
T ss_pred cceeeccceeeeeeccChhhcCCCC-------CcEEEEEeeEEe---CCCCeEEEEecCCCeEEEEEeC-------CCEE
Confidence 1122234666666677888877765 456788898876 4667788999888655544443 6799
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIA 282 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~ 282 (421)
|+|||||++...+ .++|++|++.|.+
T Consensus 181 GvQFHPE~s~~~G---------~~ll~nFl~~~ge 206 (211)
T 4gud_A 181 GVQFHPERSSKAG---------ARLIQNFLELRGE 206 (211)
T ss_dssp EESSCGGGSHHHH---------HHHHHHHHHC---
T ss_pred EEEccCEecCccH---------HHHHHHHHHHhcc
Confidence 9999999874322 6899999997753
No 27
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.92 E-value=7.4e-25 Score=200.77 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=123.5
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+|+|||++.... + .+|+++|+++|+.+++++.. + .++.+||||||||+. ..+
T Consensus 2 ~p~Igi~~~~~~----~-----~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~~---~~~--------- 53 (191)
T 2ywd_A 2 RGVVGVLALQGD----F-----REHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGES---TTI--------- 53 (191)
T ss_dssp -CCEEEECSSSC----H-----HHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSCH---HHH---------
T ss_pred CcEEEEEecCCc----h-----HHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCCh---hhh---------
Confidence 799999986521 1 35789999999999988742 2 235699999999941 100
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcC-CCEEEEchhhHHHHHHhCC-cccccchhhhccccCCCceeeecc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERN-IPYLGICRGSQVLNVACGG-TLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~-iPiLGIClG~QlLava~GG-~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
+++.| +....++++.+.+.+ +|+||||+|||+|+.++|+ +++++.. .+. ..+.+..
T Consensus 54 ~~~~~---------------~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~lg-~~~------~~~~~~~ 111 (191)
T 2ywd_A 54 GKLAR---------------EYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRLG-VLE------AWVERNA 111 (191)
T ss_dssp HHHHH---------------HTTHHHHHHHHHHTTCCEEEEETHHHHHHEEEETTCTTCCCCC-CEE------EEEETTC
T ss_pred HHhhh---------------hhhHHHHHHHHHHCCCCeEEEECHHHHHHHHHhCCCCCCcccc-ccc------eEEEcCC
Confidence 11110 111356788888889 9999999999999999998 7655431 110 0111111
Q ss_pred ccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEE
Q 041791 168 YENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIM 247 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~ 247 (421)
.. .....+.... .+..+ . .+.++.+|++.+..+|++++++|++ |+.++++++. +++
T Consensus 112 ~g-~~~~~~~~~~-----~~~~~-~-------~~~~~~~Hs~~v~~l~~~~~~~a~~-~~~~~a~~~~---------~~~ 167 (191)
T 2ywd_A 112 FG-RQVESFEEDL-----EVEGL-G-------SFHGVFIRAPVFRRLGEGVEVLARL-GDLPVLVRQG---------KVL 167 (191)
T ss_dssp SC-CSSSEEEEEE-----EETTT-E-------EEEEEEESCCEEEEECTTCEEEEEE-TTEEEEEEET---------TEE
T ss_pred cC-Cccccccccc-----cccCC-C-------ceeEEEEcccceeccCCCcEEEEEE-CCEEEEEEEC---------CEE
Confidence 00 0011121110 11111 2 4567778888887789999999999 6899999974 499
Q ss_pred EEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 248 GLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 248 GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
|+|||||.+. . ..+|++|+++|.
T Consensus 168 gvQfHPE~~~--~---------~~l~~~f~~~~~ 190 (191)
T 2ywd_A 168 ASSFHPELTE--D---------PRLHRYFLELAG 190 (191)
T ss_dssp EESSCGGGSS--C---------CHHHHHHHHHHT
T ss_pred EEEeCCCCCC--C---------cHHHHHHHHHhc
Confidence 9999999764 1 279999998763
No 28
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.92 E-value=5e-24 Score=196.55 Aligned_cols=192 Identities=17% Similarity=0.216 Sum_probs=123.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
.+|+|+... +.+. +++++++++|+.+++++. .+. ++.+||||||||+. ..|++
T Consensus 2 m~I~il~~~----~~~~-----~~~~~l~~~g~~~~~~~~---~~~----l~~~d~iil~GG~~---~~~~~-------- 54 (196)
T 2nv0_A 2 LTIGVLGLQ----GAVR-----EHIHAIEACGAAGLVVKR---PEQ----LNEVDGLILPGGES---TTMRR-------- 54 (196)
T ss_dssp CEEEEECSS----SCCH-----HHHHHHHHTTCEEEEECS---GGG----GGGCSEEEECCSCH---HHHHH--------
T ss_pred cEEEEEEcc----CCcH-----HHHHHHHHCCCEEEEeCC---hHH----HhhCCEEEECCCCh---hhHHH--------
Confidence 368888742 2222 346889999999888864 222 34699999999962 11211
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccccC
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNYEN 170 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~~~ 170 (421)
+.| .....++++.+.+.++|+||||+|+|+|+.++|+++.++. |- .+ ..+.+.. ..
T Consensus 55 -~~~---------------~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~~l----g~-~~--~~~~~~~-~g 110 (196)
T 2nv0_A 55 -LID---------------TYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHL----GL-LN--VVVERNS-FG 110 (196)
T ss_dssp -HHH---------------HTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----CCC----CC-SC--EEEECCC-SC
T ss_pred -Hhh---------------hHHHHHHHHHHHHCCCcEEEECHHHHHHHHHhcCCCCCcc----cC-Cc--eeEeccC-CC
Confidence 111 0112467888889999999999999999999999875432 20 00 0111110 00
Q ss_pred CCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEc
Q 041791 171 YDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQ 250 (421)
Q Consensus 171 ~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQ 250 (421)
+... .+ ..+..+ ..++. .+.++++|++.|..+|++++++|++ |+.++|+++ ++++|+|
T Consensus 111 ~~~~--~~--~~~~~~-~~~g~-------~~~~~~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~---------~~~~gvQ 168 (196)
T 2nv0_A 111 RQVD--SF--EADLTI-KGLDE-------PFTGVFIRAPHILEAGENVEVLSEH-NGRIVAAKQ---------GQFLGCS 168 (196)
T ss_dssp TTTS--EE--EEEECC-TTCSS-------CEEEEEESCCEEEEECTTCEEEEEE-TTEEEEEEE---------TTEEEES
T ss_pred cccc--cc--cCCccc-ccCCC-------ceEEEEEecceecccCCCcEEEEEE-CCEEEEEEE---------CCEEEEE
Confidence 0000 11 111112 22343 6778899999998889999999998 788999986 3699999
Q ss_pred cccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 041791 251 FHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEKK 286 (421)
Q Consensus 251 FHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~~ 286 (421)
||||++.. ..+|++|++.+++.+++
T Consensus 169 fHPE~~~~-----------~~l~~~fl~~~~~~~~~ 193 (196)
T 2nv0_A 169 FHPELTED-----------HRVTQLFVEMVEEYKQK 193 (196)
T ss_dssp SCTTSSSC-----------CHHHHHHHHHHHHHHHH
T ss_pred ECCccCCc-----------hHHHHHHHHHHHhhhhh
Confidence 99998642 37999999998775553
No 29
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.91 E-value=4.1e-25 Score=204.66 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=124.3
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCC-----CeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYG-----AVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-----a~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
+|+|+.-... . . .+|.++|+++| +.+++++... + +.+||||||||.+. ++
T Consensus 2 ~I~iid~~~g---~----~-~s~~~~l~~~G~~~~~~~~~~~~~~~---~-----~~~dglilpG~g~~-----~~---- 56 (201)
T 1gpw_B 2 RIGIISVGPG---N----I-MNLYRGVKRASENFEDVSIELVESPR---N-----DLYDLLFIPGVGHF-----GE---- 56 (201)
T ss_dssp EEEEECCSSS---C----C-HHHHHHHHHHSTTBSSCEEEEECSCC---S-----SCCSEEEECCCSCS-----HH----
T ss_pred EEEEEecCCc---h----H-HHHHHHHHHcCCCCCceEEEEECCCc---c-----cCCCEEEECCCCcH-----HH----
Confidence 6788864311 1 1 45667889999 8888877522 1 46999999996431 11
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhC--CcccccchhhhccccCCCceee
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACG--GTLYQDIEKEISKNCSLGQRVV 164 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~G--G~v~~~~~~e~g~~~~~~~~v~ 164 (421)
.++|++ +..+.++++.+++.++|+||||+|||+|+.++| |+ .++.. .++ ..+.
T Consensus 57 ----~~~~l~-------------~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l~-~~~------g~v~ 111 (201)
T 1gpw_B 57 ----GMRRLR-------------ENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPG-VKGLS-LIE------GNVV 111 (201)
T ss_dssp ----HHHHHH-------------HTTCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEE-EECCC-SSS------EEEE
T ss_pred ----HHHHHH-------------hhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCC-CCCcc-eee------eEEE
Confidence 233432 122467888888999999999999999999997 44 33321 111 1111
Q ss_pred eccc-cCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCC-C-eEEEEEeCCCCCCC
Q 041791 165 HMNY-ENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASD-G-LIEGFYDPDAYNPQ 241 (421)
Q Consensus 165 H~~~-~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~d-g-~ieaie~~~~~~~~ 241 (421)
+... .....+|+++.+...+ . .+.++++|++.|..+ +++++|++++ | .+++++++
T Consensus 112 ~~~~~~~~~~g~~~l~~~~~~-------~-------~~~v~~~H~~~v~~~--~~~vla~s~~~g~~~~a~~~~------ 169 (201)
T 1gpw_B 112 KLRSRRLPHMGWNEVIFKDTF-------P-------NGYYYFVHTYRAVCE--EEHVLGTTEYDGEIFPSAVRK------ 169 (201)
T ss_dssp ECCCSSCSEEEEEEEEESSSS-------C-------CEEEEEEESEEEEEC--GGGEEEEEEETTEEEEEEEEE------
T ss_pred EcCCCCCCcccceeeEeccCC-------C-------CCeEEEECcceeccC--CCEEEEEEccCCceEEEEEEC------
Confidence 1110 0011235666543221 1 467899999999765 7899999876 6 89999986
Q ss_pred CCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHH
Q 041791 242 EGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVI 281 (421)
Q Consensus 242 ~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~ 281 (421)
.+++|+|||||++.. . ..++|++|++++.
T Consensus 170 --~~i~gvQfHPE~~~~-~--------~~~l~~~f~~~~~ 198 (201)
T 1gpw_B 170 --GRILGFQFHPEKSSK-I--------GRKLLEKVIECSL 198 (201)
T ss_dssp --TTEEEESSCGGGSHH-H--------HHHHHHHHHHHSS
T ss_pred --CCEEEEECCCcccCH-h--------HHHHHHHHHHHhh
Confidence 379999999999832 2 3689999998764
No 30
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.90 E-value=2.1e-23 Score=196.92 Aligned_cols=201 Identities=14% Similarity=0.163 Sum_probs=125.6
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHC---CCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCcccccc
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY---GAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELS 85 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~---Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~ 85 (421)
.+++|+|+..... + ..|+++|+++ |+.+++++. .+. ++.+||||||||++ +.+..
T Consensus 2 ~~~~I~Il~~~~~----~-----~~~~~~l~~~~~~G~~~~~~~~---~~~----l~~~dglil~GG~~---~~~~~--- 59 (227)
T 2abw_A 2 SEITIGVLSLQGD----F-----EPHINHFIKLQIPSLNIIQVRN---VHD----LGLCDGLVIPGGES---TTVRR--- 59 (227)
T ss_dssp CCEEEEEECTTSC----C-----HHHHHHHHTTCCTTEEEEEECS---HHH----HHTCSEEEECCSCH---HHHHH---
T ss_pred CCcEEEEEeCCCC----c-----HHHHHHHHHhccCCeEEEEEcC---ccc----cccCCEEEECCCcH---HHHHH---
Confidence 4588999986521 2 2589999999 999888873 233 34699999999962 11110
Q ss_pred CCChhhHHHHHhhccCccccchhhh--HHHHHHHHHHHHc-CCCEEEEchhhHHHHHHhCCcccccc---hhhhccccCC
Q 041791 86 GFAPEELEEIRALHASDTAIDKEKD--TIELRLAKLCLER-NIPYLGICRGSQVLNVACGGTLYQDI---EKEISKNCSL 159 (421)
Q Consensus 86 ~~~~e~~~~i~~~~~~~~~~d~~rd--~~el~li~~ale~-~iPiLGIClG~QlLava~GG~v~~~~---~~e~g~~~~~ 159 (421)
..++ .....+++.+.+. ++||||||+|||+|+.++|+++.... ..++|- .+
T Consensus 60 ---------------------~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~-~~- 116 (227)
T 2abw_A 60 ---------------------CCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGG-LD- 116 (227)
T ss_dssp ---------------------HTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCC-EE-
T ss_pred ---------------------HHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCc-ee-
Confidence 0011 1225778888899 99999999999999999998752210 112320 00
Q ss_pred CceeeeccccCCCCce--eEEEEccCCcchhhcccccccCceeEEEecccccccccc-CCCeEEEEEeC-----CCeEEE
Q 041791 160 GQRVVHMNYENYDGHR--HLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKL-AQRFVPMAFAS-----DGLIEG 231 (421)
Q Consensus 160 ~~~v~H~~~~~~~~~~--h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L-~~g~~vla~s~-----dg~iea 231 (421)
..+.+.. ..+.... +.+.+ ++.. ...+. .+.++..|++.|..+ |++++++|+++ ++.++|
T Consensus 117 -~~~~~~~-~g~~~~~~~~~~~~-~~~~--~~~g~-------~~~~~~~h~~~v~~~~~~~~~vla~~~~~~~g~~~~~a 184 (227)
T 2abw_A 117 -ITICRNF-YGSQNDSFICSLNI-ISDS--SAFKK-------DLTAACIRAPYIREILSDEVKVLATFSHESYGPNIIAA 184 (227)
T ss_dssp -EEEECCC-----CCEEEEECEE-CCCC--TTCCT-------TCEEEEESCCEEEEECCTTCEEEEEEEETTTEEEEEEE
T ss_pred -EEEEecC-CCcccccccccccc-cccc--ccCCC-------ceeEEEEEcceEeecCCCCcEEEEEcccccCCCCceEE
Confidence 0010000 0000000 11111 1100 00011 344555677778777 99999999986 688999
Q ss_pred EEeCCCCCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh
Q 041791 232 FYDPDAYNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAVIAYEKK 286 (421)
Q Consensus 232 ie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~~~~~~~ 286 (421)
++. ++++|+|||||++.. ..+|++|+++|+.+...
T Consensus 185 ~~~---------~~v~gvQfHPE~~~~-----------~~l~~~Fl~~~~~~~~~ 219 (227)
T 2abw_A 185 VEQ---------NNCLGTVFHPELLPH-----------TAFQQYFYEKVKNYKYS 219 (227)
T ss_dssp EEE---------TTEEEESSCGGGSSC-----------CHHHHHHHHHHHHHHHH
T ss_pred EEE---------CCEEEEEECCeeCCC-----------cHHHHHHHHHHHhhhcc
Confidence 986 369999999998742 47999999998766554
No 31
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.89 E-value=1.2e-23 Score=195.00 Aligned_cols=189 Identities=15% Similarity=0.205 Sum_probs=116.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCChh
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAPE 90 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~e 90 (421)
.+|+|+.... +.+ .+|+++|+++|+.+++++.. + .++.+||||||||.+.++.
T Consensus 3 ~~I~iid~~~---~~~-----~~~~~~l~~~G~~~~~~~~~---~----~l~~~d~lil~G~g~~~~~------------ 55 (200)
T 1ka9_H 3 MKALLIDYGS---GNL-----RSAAKALEAAGFSVAVAQDP---K----AHEEADLLVLPGQGHFGQV------------ 55 (200)
T ss_dssp CEEEEECSSC---SCH-----HHHHHHHHHTTCEEEEESST---T----SCSSCSEEEECCCSCHHHH------------
T ss_pred cEEEEEeCCC---ccH-----HHHHHHHHHCCCeEEEecCh---H----HcccCCEEEECCCCcHHHH------------
Confidence 4788884321 111 34688999999999988742 1 2457999999986542111
Q ss_pred hHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH---hCCcccccchhhhccccCCCceeeecc
Q 041791 91 ELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA---CGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 91 ~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava---~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
++|+ ++..+.++++.+.+.++|+||||+|||+|+.+ +|+ +++.. .+. ..+.+..
T Consensus 56 -~~~l-------------~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg--~~~l~-~~~------g~v~~~~ 112 (200)
T 1ka9_H 56 -MRAF-------------QESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPG--VRGLG-LVP------GEVRRFR 112 (200)
T ss_dssp -HHTT-------------SSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTT--CCCCC-SSS------SEEEECC
T ss_pred -HHHH-------------HhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCC--cCCcc-ccc------cEEEECC
Confidence 1111 11224578888889999999999999999999 575 44431 111 1122211
Q ss_pred c-cCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCC-C-eEEEEEeCCCCCCCCCC
Q 041791 168 Y-ENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASD-G-LIEGFYDPDAYNPQEGK 244 (421)
Q Consensus 168 ~-~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~d-g-~ieaie~~~~~~~~~~~ 244 (421)
. .....+|+++.+.+ + +..+.+ . ..++++++|. .++++ .+ |+++| | .++++.+. .
T Consensus 113 ~~~~~~~G~~~v~~~~-~-l~~~~~-~-----~~~~~Hs~~~----~~~~~-~v-a~s~~~g~~~~~~~~~--------~ 170 (200)
T 1ka9_H 113 AGRVPQMGWNALEFGG-A-FAPLTG-R-----HFYFANSYYG----PLTPY-SL-GKGEYEGTPFTALLAK--------E 170 (200)
T ss_dssp SSSSSEEEEEECEECG-G-GGGGTT-C-----EEEEEESEEC----CCCTT-CC-EEEEETTEEEEEEEEC--------S
T ss_pred CCCCCceeEEEEEech-h-hhcCCC-C-----CEEEeccccc----CCCCC-cE-EEEEeCCeEEEEEEee--------C
Confidence 0 11123588888876 4 333221 1 1344555554 33444 56 88877 7 68888775 4
Q ss_pred cEEEEccccCccCCCCCCCCCCchhhHHH---HHHHHHH
Q 041791 245 FIMGLQFHPERMRNQDSDNFDYPGCKSAY---QEFVKAV 280 (421)
Q Consensus 245 ~i~GvQFHPE~~~~~~~~~~d~~~~~~lf---~~Fv~a~ 280 (421)
+++|+|||||++.. . ..++| ++|++.|
T Consensus 171 ~i~gvQfHPE~~~~-~--------g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 171 NLLAPQFHPEKSGK-A--------GLAFLALARRYFEVL 200 (200)
T ss_dssp SEEEESSCTTSSHH-H--------HHHHHHHHHHHC---
T ss_pred CEEEEecCCCcCcc-c--------hhHHHHHHHHHHhhC
Confidence 89999999999852 2 36899 9998754
No 32
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=6.1e-23 Score=191.63 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=119.8
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
.+.+|+|+.- ...+ ..++++|+.+|+.+++++.. +. ++.+||||||||. |..|++
T Consensus 19 ~~~~I~ii~~----~~~~-----~~~~~~l~~~g~~~~~~~~~---~~----l~~~d~iil~GG~---~~~~~~------ 73 (208)
T 2iss_D 19 SHMKIGVLGV----QGDV-----REHVEALHKLGVETLIVKLP---EQ----LDMVDGLILPGGE---STTMIR------ 73 (208)
T ss_dssp -CCEEEEECS----SSCH-----HHHHHHHHHTTCEEEEECSG---GG----GGGCSEEEECSSC---HHHHHH------
T ss_pred CCcEEEEEEC----CCch-----HHHHHHHHHCCCEEEEeCCh---HH----HhhCCEEEECCCc---HHHHHh------
Confidence 3468999942 1222 23677889999998888632 22 3469999999994 333321
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeeccc
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMNY 168 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~~ 168 (421)
+.|. ....++++.+.+.++|+||||+|||+|+.++|++..++.. .+. ..+.+..
T Consensus 74 ---~~~~---------------~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg-~~~------~~v~~~~- 127 (208)
T 2iss_D 74 ---ILKE---------------MDMDEKLVERINNGLPVFATCAGVILLAKRIKNYSQEKLG-VLD------ITVERNA- 127 (208)
T ss_dssp ---HHHH---------------TTCHHHHHHHHHTTCCEEEETHHHHHHEEEEC---CCCCC-CEE------EEEETTT-
T ss_pred ---hhhh---------------hhHHHHHHHHHHCCCeEEEECHHHHHHHHHcCCCCCCCcc-ccc------eEEEecC-
Confidence 1111 1124678888889999999999999999999997544321 110 0111100
Q ss_pred cCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccccCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEE
Q 041791 169 ENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKKLAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMG 248 (421)
Q Consensus 169 ~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~G 248 (421)
..+. .+.+ ..++.+ ..++. +++.++++|++.|..+|++++++|++ |+.+++++. ++++|
T Consensus 128 ~g~~--~~~~--~~~~~~-~~~~~------~~~~~~~~h~~~v~~~~~~~~v~a~~-d~~~~a~~~---------~~i~G 186 (208)
T 2iss_D 128 YGRQ--VESF--ETFVEI-PAVGK------DPFRAIFIRAPRIVETGKNVEILATY-DYDPVLVKE---------GNILA 186 (208)
T ss_dssp TCSG--GGCE--EEEECC-GGGCS------SCEEEEESSCCEEEEECSSCEEEEEE-TTEEEEEEE---------TTEEE
T ss_pred CCcc--cccc--cCCccc-ccCCC------CceEEEEEeCcccccCCCCcEEEEEE-CCEEEEEEE---------CCEEE
Confidence 0000 0111 111222 22331 26788999999998889999999998 699999986 36999
Q ss_pred EccccCccCCCCCCCCCCchhhHHHHHHHHHH
Q 041791 249 LQFHPERMRNQDSDNFDYPGCKSAYQEFVKAV 280 (421)
Q Consensus 249 vQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~ 280 (421)
+|||||++.. ..+|++|+++|
T Consensus 187 vQfHPE~~~~-----------~~l~~~fl~~~ 207 (208)
T 2iss_D 187 CTFHPELTDD-----------LRLHRYFLEMV 207 (208)
T ss_dssp ESSCGGGSSC-----------CHHHHHHHTTC
T ss_pred EEeCCCcCCc-----------HHHHHHHHHHh
Confidence 9999999752 37999999764
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.87 E-value=2.6e-23 Score=221.00 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=131.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
+|+|+|+.... +. . ..|+++|+++|+.+++++.. +. ..++.+||||||||.+.++.
T Consensus 4 m~~I~Iid~~~---g~----~-~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG~~~~~----------- 59 (555)
T 1jvn_A 4 MPVVHVIDVES---GN----L-QSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVGNYGHF----------- 59 (555)
T ss_dssp SCEEEEECCSC---SC----C-HHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECSCHHHH-----------
T ss_pred CCEEEEEECCC---CC----H-HHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCCchHhH-----------
Confidence 58999997431 11 1 35789999999999998742 22 23567999999996543210
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHh--CCcccccchhhhccccCCCceeeecc
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVAC--GGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~--GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
..++ ++.....+++.+++.++|+||||+|||+|+.++ ||. +++.. .++. .+.|..
T Consensus 60 --~~~l-------------~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~~egg~-~~~Lg-~lgg------~v~~~~ 116 (555)
T 1jvn_A 60 --VDNL-------------FNRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPK-STGLN-YIDF------KLSRFD 116 (555)
T ss_dssp --HHHH-------------HHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEETTBTT-CCCCC-SEEE------EEEECC
T ss_pred --hhhh-------------hhccHHHHHHHHHHcCCcEEEEchhhhhhhhhhhcCCC-ccccC-CCCc------EEEECC
Confidence 1111 111235778888899999999999999999988 222 33331 1221 111111
Q ss_pred ---ccCCCCceeEEEEccCCcchhhcccccccCceeEEEeccccccccc----cCCCeEEEEEeC---CCeEEEEEeCCC
Q 041791 168 ---YENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQGVKK----LAQRFVPMAFAS---DGLIEGFYDPDA 237 (421)
Q Consensus 168 ---~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~V~~----L~~g~~vla~s~---dg~ieaie~~~~ 237 (421)
......+|+.+.+. ++++..++.. ...+++|++|++.+.. +|+++.++|+++ |+.+++++.
T Consensus 117 ~~~~~~~~~G~~~v~~~--~~L~~~l~~~----~~~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~--- 187 (555)
T 1jvn_A 117 DSEKPVPEIGWNSCIPS--ENLFFGLDPY----KRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNK--- 187 (555)
T ss_dssp TTTSCSSEEEEECCCCC--TTCCTTCCTT----SCEEEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEE---
T ss_pred cCCCCCccccceEEEEc--CHHHhhCCCC----ceEEEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEe---
Confidence 01112257777654 6676666431 1256788898887754 377888999886 568999994
Q ss_pred CCCCCCCcEEEEccccCccCCCCCCCCCCchhhHHHHHHHHHH
Q 041791 238 YNPQEGKFIMGLQFHPERMRNQDSDNFDYPGCKSAYQEFVKAV 280 (421)
Q Consensus 238 ~~~~~~~~i~GvQFHPE~~~~~~~~~~d~~~~~~lf~~Fv~a~ 280 (421)
.+++|+|||||.+... ...+|++|+++.
T Consensus 188 ------~~i~GvQFHPE~s~~~---------g~~l~~~Fl~~~ 215 (555)
T 1jvn_A 188 ------NNIFATQFHPEKSGKA---------GLNVIENFLKQQ 215 (555)
T ss_dssp ------TTEEEESSBGGGSHHH---------HHHHHHHHHTTC
T ss_pred ------CCEEEEEeCcEecChh---------HHHHHHHHHhcc
Confidence 4799999999987421 268999999864
No 34
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.73 E-value=9.3e-17 Score=158.33 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=95.6
Q ss_pred CCcCEEEECCCC-CCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 62 EPIHGVLLCEGE-DIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 62 ~~~DGVIL~GG~-didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
+.+||+||+||+ ... .|++. +|+. -+.++++++.++++|+||||+|+|++..+
T Consensus 98 ~~~DglIITGap~~~~--~~ed~---------~yw~---------------el~~li~~~~~~~~~~lgIC~GaQ~~l~~ 151 (301)
T 2vdj_A 98 EKFDGLIITGAPVETL--SFEEV---------DYWE---------------ELKRIMEYSKTNVTSTLHICWGAQAGLYH 151 (301)
T ss_dssp SCEEEEEECCCTTTTS--CGGGS---------TTHH---------------HHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred cccCEEEECCCCCcCC--CcccC---------chHH---------------HHHHHHHHHHHcCCcEEEEcHHHHHHHHH
Confidence 579999999998 222 13222 2321 14578899999999999999999996666
Q ss_pred hCC-cccccchhhhccccCCCceeeeccccCCCCceeEEEEc-cCCcchhhcccccccCceeEEEeccc-----cccccc
Q 041791 141 CGG-TLYQDIEKEISKNCSLGQRVVHMNYENYDGHRHLVKVV-EDTPLHQWFRDSLEENKMEIMVNSYH-----HQGVKK 213 (421)
Q Consensus 141 ~GG-~v~~~~~~e~g~~~~~~~~v~H~~~~~~~~~~h~V~i~-~~s~L~~~~~~~l~~~~~~~~V~s~H-----~~~V~~ 213 (421)
+|| ..+.....++| +.++.+. +.+++++.+++ .+.+.++| .+.|..
T Consensus 152 ~~G~~k~~~~~K~~G--------------------v~~~~~~~~~~pL~~g~~~-------~f~~phsr~~~~~~~~v~~ 204 (301)
T 2vdj_A 152 HYGVQKYPLKEKMFG--------------------VFEHEVREQHVKLLQGFDE-------LFFAVHSRHTEVRESDIRE 204 (301)
T ss_dssp HHCCCCEEEEEEEEE--------------------EEEEEECCSSCGGGTTCCS-------EEEEEEEEEEECCHHHHHT
T ss_pred hCCCccccCCCCEEE--------------------EEEEEecCCCCccccCCCC-------ceEeeeEeccCcCHHHccC
Confidence 555 33333333444 3344443 35778877765 66676654 355666
Q ss_pred cCCCeEEEEEeCCCeEEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 214 LAQRFVPMAFASDGLIEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 214 L~~g~~vla~s~dg~ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
+| +++++|.|+.+.++++..++ ..++++|||||++.
T Consensus 205 ~p-ga~vLA~S~~~~~~~~~~~~-------~~~~~vQgHpEyd~ 240 (301)
T 2vdj_A 205 VK-ELTLLANSEEAGVHLVIGQE-------GRQVFALGHSEYSC 240 (301)
T ss_dssp CT-TEEEEEEETTTEEEEEEEGG-------GTEEEECSCTTCCT
T ss_pred CC-CCEEEEeCCCCcceEEEecC-------CCEEEEECCCCCCH
Confidence 64 99999999999999999865 57999999999985
No 35
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.72 E-value=1.3e-16 Score=157.87 Aligned_cols=181 Identities=13% Similarity=0.048 Sum_probs=115.9
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEE--EcCCC-C-----hh-------hhhhh-cCCcCEEEECCCC-
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVI--VPRVT-G-----VH-------MLLES-FEPIHGVLLCEGE- 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vi--vp~~~-~-----~~-------~l~~~-l~~~DGVIL~GG~- 73 (421)
-+|||+-..... .. ....+++.|...+..+.+ +.... . .+ .+.+. .+.+||+||+||+
T Consensus 48 lkI~ILnlmp~k-~~----te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~ 122 (312)
T 2h2w_A 48 LEILILNLMPDK-IK----TEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPV 122 (312)
T ss_dssp EEEEEECCCSSH-HH----HHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSC
T ss_pred ceEEEEeCCCCc-Cc----hHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCC
Confidence 368998864332 11 224466777766654443 22111 1 01 12221 3579999999998
Q ss_pred CCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhCC-cccccchhh
Q 041791 74 DIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGG-TLYQDIEKE 152 (421)
Q Consensus 74 didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~GG-~v~~~~~~e 152 (421)
... .|++. +|+. -+.++++++.+.++|+||||+|+|++..++|| ..+.....+
T Consensus 123 ~~~--~~ed~---------~yw~---------------el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~ 176 (312)
T 2h2w_A 123 ELL--PFEEV---------DYWE---------------ELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKL 176 (312)
T ss_dssp TTS--CGGGS---------TTHH---------------HHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEE
T ss_pred CCC--CCccC---------chHH---------------HHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCE
Confidence 222 23222 2321 14578889999999999999999997666655 333323334
Q ss_pred hccccCCCceeeeccccCCCCceeEEEEccCCcchhhcccccccCceeEEEecccccc-----ccccCCCeEEEEEeCCC
Q 041791 153 ISKNCSLGQRVVHMNYENYDGHRHLVKVVEDTPLHQWFRDSLEENKMEIMVNSYHHQG-----VKKLAQRFVPMAFASDG 227 (421)
Q Consensus 153 ~g~~~~~~~~v~H~~~~~~~~~~h~V~i~~~s~L~~~~~~~l~~~~~~~~V~s~H~~~-----V~~L~~g~~vla~s~dg 227 (421)
+| +.++.+...+++++.+++ .+.+..+|+.. |..+ ++++++|.|+.+
T Consensus 177 ~G--------------------v~~~~~~~~~pL~~g~~~-------~f~vphsr~~e~~~~~v~~~-pga~vLA~S~~~ 228 (312)
T 2h2w_A 177 SG--------------------VYKHRVAKDSVLFRGHDD-------FFWAPHSRYTEVKKEDIDKV-PELEILAESDEA 228 (312)
T ss_dssp EE--------------------EEEEEESSCCGGGTTCCS-------EEEEEEEEEEECCHHHHTTC-C-CEEEEEETTT
T ss_pred EE--------------------EEEEEEcCCCccccCCCC-------ceEeeEEeccccCHHHccCC-CCCEEEEcCCCC
Confidence 54 455566667788887765 67777664433 3333 599999999999
Q ss_pred eEEEEEeCCCCCCCCCCcEEEEccccCccC
Q 041791 228 LIEGFYDPDAYNPQEGKFIMGLQFHPERMR 257 (421)
Q Consensus 228 ~ieaie~~~~~~~~~~~~i~GvQFHPE~~~ 257 (421)
.++++..++ ..++++|||||++.
T Consensus 229 ~~q~~~~~~-------~~~~~vQgHPEyd~ 251 (312)
T 2h2w_A 229 GVYVVANKS-------ERQIFVTGHPEYDR 251 (312)
T ss_dssp EEEEEECSS-------SSEEEECSCTTCCT
T ss_pred cceEEEecC-------CCEEEEECCCCCCH
Confidence 999999865 57999999999985
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.29 E-value=1.8e-11 Score=140.09 Aligned_cols=223 Identities=17% Similarity=0.185 Sum_probs=125.0
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
.+|+|+|+.-+.... ...+.++++.+|+.+++++... ...-...++.+||||||||.. |++....
T Consensus 1046 ~~pkVaIi~~~G~N~-------~~~~~~A~~~aG~~~~~v~~~d-l~~~~~~l~~~d~lvlPGGfS-----ygD~l~~-- 1110 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNS-------HVEMAAAFHRAGFDAIDVHMSD-LLGGRIGLGNFHALVACGGFS-----YGDVLGA-- 1110 (1303)
T ss_dssp CCCEEEEEECTTCCC-------HHHHHHHHHHTTCEEEEEEHHH-HHTTSCCGGGCSEEEECCSCG-----GGGTTST--
T ss_pred CCCEEEEEecCCcCC-------HHHHHHHHHHhCCceEEEeecc-cccCcccHhhCCEEEECCCCc-----chhhhcc--
Confidence 479999999876532 2245678999999999876310 000012345799999999953 4442210
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHH-HcCCCEEEEchhhHHHHHHhCCcccccchhhhccccCCCceeeecc
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCL-ERNIPYLGICRGSQVLNVACGGTLYQDIEKEISKNCSLGQRVVHMN 167 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~al-e~~iPiLGIClG~QlLava~GG~v~~~~~~e~g~~~~~~~~v~H~~ 167 (421)
. --|+. ...++......++.+. +.++|+||||+|||+|+.+.| +..... . .....++.
T Consensus 1111 g--~~~a~---------~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~g--llPg~~-~-------~p~l~~N~ 1169 (1303)
T 3ugj_A 1111 G--EGWAK---------SILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRE--LIPGSE-L-------WPRFVRNH 1169 (1303)
T ss_dssp T--HHHHH---------HHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGG--GSTTCT-T-------CCEEECCT
T ss_pred c--hhHHH---------HHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcC--cCCCCC-C-------CCeEecCC
Confidence 0 00110 1122233344455544 579999999999999997522 111110 0 01122332
Q ss_pred ccCCCCceeEEEEcc-CCcchhhcccccccCceeEEEeccccccc---------ccc-CCCeEEEEE-------------
Q 041791 168 YENYDGHRHLVKVVE-DTPLHQWFRDSLEENKMEIMVNSYHHQGV---------KKL-AQRFVPMAF------------- 223 (421)
Q Consensus 168 ~~~~~~~~h~V~i~~-~s~L~~~~~~~l~~~~~~~~V~s~H~~~V---------~~L-~~g~~vla~------------- 223 (421)
...+...|..+++.. .|++++.+... .+.++-.|+++= +.| .++..++-+
T Consensus 1170 s~~f~~r~~~~~v~~~~s~~~~~~~g~------~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~ 1243 (1303)
T 3ugj_A 1170 SDRFEARFSLVEVTQSPSLLLQGMVGS------QMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPA 1243 (1303)
T ss_dssp TSSCEEEEEEEEECCCSCGGGTTCTTC------EEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTT
T ss_pred CCCeEEeCeEEEECCCCChhhhccCCC------EEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCC
Confidence 222333467777754 46666666432 566666676441 111 233333322
Q ss_pred eCCC---eEEEEEeCCCCCCCCCCcEEEEccccCccCCCCCC-----CC-CCchhhHHHHHHHHHH
Q 041791 224 ASDG---LIEGFYDPDAYNPQEGKFIMGLQFHPERMRNQDSD-----NF-DYPGCKSAYQEFVKAV 280 (421)
Q Consensus 224 s~dg---~ieaie~~~~~~~~~~~~i~GvQFHPE~~~~~~~~-----~~-d~~~~~~lf~~Fv~a~ 280 (421)
+++| -|+||..++ ++++|...||||....... ++ +.....++|++-.+.|
T Consensus 1244 NPNGS~~~IaGi~s~~-------Grvlg~MpHPEr~~~~~~~~~~p~~~~~~~pw~~~F~na~~w~ 1302 (1303)
T 3ugj_A 1244 NPNGSPNGITAVTTEN-------GRVTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQL 1302 (1303)
T ss_dssp SSSCCGGGEEEEECTT-------SSEEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHHHH
T ss_pred CCCCChhhceEeECCC-------CCEEEEcCChHHccccccccCCCcccCCCCcHHHHHHHHHHhc
Confidence 2345 399999998 7899999999997653321 11 1223556776655443
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.47 E-value=1.7e-07 Score=87.26 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=65.9
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFA 88 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~ 88 (421)
-|+|+++..-+... ....|+ .++.+++++.|+.+.++... .+.++..+.++.+|+|++|||....
T Consensus 27 ~~~i~~Ip~As~~~-~~~~~~-~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~------------ 92 (206)
T 3l4e_A 27 GKTVTFIPTASTVE-EVTFYV-EAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFF------------ 92 (206)
T ss_dssp TCEEEEECGGGGGC-SCCHHH-HHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHH------------
T ss_pred CCEEEEECCCCCCC-CHHHHH-HHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHH------------
Confidence 38888888543211 111233 45678999999987776422 2344444556789999999985210
Q ss_pred hhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHH
Q 041791 89 PEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNV 139 (421)
Q Consensus 89 ~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLav 139 (421)
-+.+ .++..-...++.++++++|++|||.|+|+++.
T Consensus 93 --l~~~-------------L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 93 --LLQE-------------LKRTGADKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp --HHHH-------------HHHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred --HHHH-------------HHHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 0111 22233456778888899999999999999964
No 38
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.39 E-value=3.2e-07 Score=86.62 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=63.0
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCCCCccccccCCCh
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFAP 89 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~~~~~~ 89 (421)
.|+|+|+..-... .....+ ..++.++++++|+.++.+....+. .+.++.+|+|+||||... .
T Consensus 31 ~~~i~iI~~a~~~-~~~~~~-~~~~~~al~~lG~~~~~v~~~~d~---~~~l~~ad~I~lpGG~~~---~---------- 92 (229)
T 1fy2_A 31 RRSAVFIPFAGVT-QTWDEY-TDKTAEVLAPLGVNVTGIHRVADP---LAAIEKAEIIIVGGGNTF---Q---------- 92 (229)
T ss_dssp CCEEEEECTTCCS-SCHHHH-HHHHHHHHGGGTCEEEETTSSSCH---HHHHHHCSEEEECCSCHH---H----------
T ss_pred CCeEEEEECCCCC-CCHHHH-HHHHHHHHHHCCCEEEEEeccccH---HHHHhcCCEEEECCCcHH---H----------
Confidence 4889988754321 112223 345678899999987777533232 233456999999998521 0
Q ss_pred hhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 90 EELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 90 e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
-+..++ +..-...++.++++++|++|||.|||+|+..
T Consensus 93 -~~~~l~-------------~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 93 -LLKESR-------------ERGLLAPMADRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp -HHHHHH-------------HTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred -HHHHHH-------------HCChHHHHHHHHHcCCEEEEECHHHHhhccc
Confidence 112222 1122456777778899999999999999764
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.75 E-value=0.00016 Score=65.76 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=61.0
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh---------h-----hhhh-hcCCcCEEEECCCCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV---------H-----MLLE-SFEPIHGVLLCEGED 74 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~---------~-----~l~~-~l~~~DGVIL~GG~d 74 (421)
..+|+|+..+..... ++ ..-++.+..+|..+.++....+. . .+.+ ..+.+|+||+|||.+
T Consensus 23 ~~kV~ill~~g~~~~---e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~ 97 (193)
T 1oi4_A 23 SKKIAVLITDEFEDS---EF--TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS 97 (193)
T ss_dssp CCEEEEECCTTBCTH---HH--HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH
T ss_pred CCEEEEEECCCCCHH---HH--HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC
Confidence 357888887543211 11 12356788899888777543321 0 1111 124689999999952
Q ss_pred CCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 75 IDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
. .. ...+.....+++.+.++++|+.|||.|.|+|+.+
T Consensus 98 ~--~~---------------------------l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 98 P--DY---------------------------LRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp H--HH---------------------------HTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred H--HH---------------------------hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 1 00 0012234577888888999999999999999986
No 40
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.24 E-value=0.001 Score=60.40 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=60.5
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC------------hh-hhhhh--cCCcCEEEECCCCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG------------VH-MLLES--FEPIHGVLLCEGED 74 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~------------~~-~l~~~--l~~~DGVIL~GG~d 74 (421)
..+|+|+..+.... .++. .-++.+..+|..+.++....+ .+ .+.+. .+.+|.||+|||..
T Consensus 3 ~~~v~ill~~g~~~---~e~~--~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~ 77 (197)
T 2rk3_A 3 SKRALVILAKGAEE---METV--IPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77 (197)
T ss_dssp CCEEEEEECTTCCH---HHHH--HHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHH
T ss_pred CCEEEEEECCCCcH---HHHH--HHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCch
Confidence 45788887654321 1222 235678888988877653221 11 11221 15799999999941
Q ss_pred CCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 75 IDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
. +. +...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 78 ~-~~---------------------------~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 78 G-AQ---------------------------NLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp H-HH---------------------------HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred h-HH---------------------------HhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 0 00 00112334577888889999999999999999875
No 41
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.22 E-value=0.00088 Score=60.56 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=62.5
Q ss_pred CCcCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-----------hh-hhhh-hcCCcCEEEEC
Q 041791 4 SDLSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-----------VH-MLLE-SFEPIHGVLLC 70 (421)
Q Consensus 4 ~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-----------~~-~l~~-~l~~~DGVIL~ 70 (421)
+.+...+.+|+|+.......- .++ .-++.++++|+.+.++....+ .+ .+.+ ..+.+|+||||
T Consensus 2 ~~m~~t~~~v~il~~~gFe~~---E~~--~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiP 76 (177)
T 4hcj_A 2 NAMGKTNNILYVMSGQNFQDE---EYF--ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFV 76 (177)
T ss_dssp ---CCCCEEEEECCSEEECHH---HHH--HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEEC
T ss_pred CccccCCCEEEEECCCCccHH---HHH--HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEEC
Confidence 445556678888875533221 222 234668899998887654211 01 1111 13468999999
Q ss_pred CCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 71 EGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 71 GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
||... ... ..+..-..+++.+.++++||.+||-|-++|+.+
T Consensus 77 GG~g~--~~l---------------------------~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 77 GGIGC--ITL---------------------------WDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp CSGGG--GGG---------------------------TTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred CCccH--HHH---------------------------hhCHHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 99531 100 011223577888889999999999999999875
No 42
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=96.99 E-value=0.0023 Score=59.81 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHhC
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~G 142 (421)
..++++.+.++++||.+||-|-++|+.++.
T Consensus 122 l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 122 LKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp HHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 457888888999999999999999998743
No 43
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=96.98 E-value=0.0038 Score=54.86 Aligned_cols=96 Identities=20% Similarity=0.299 Sum_probs=58.9
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-----------h-hhhhh-cCCcCEEEECCCCCCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-----------H-MLLES-FEPIHGVLLCEGEDIDP 77 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----------~-~l~~~-l~~~DGVIL~GG~didp 77 (421)
.+|+|+..+..... ++. .-++.+..+|..+.++....+. + .+.+. .+.+|.||+|||.+.
T Consensus 3 ~ki~il~~~g~~~~---e~~--~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-- 75 (168)
T 3l18_A 3 MKVLFLSADGFEDL---ELI--YPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAP-- 75 (168)
T ss_dssp CEEEEECCTTBCHH---HHH--HHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH--
T ss_pred cEEEEEeCCCccHH---HHH--HHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCH--
Confidence 46888876643211 122 2356778889888776542210 0 11111 125899999999521
Q ss_pred CCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 78 SLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 78 ~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.. ...+.....+++.+.++++|+.+||-|.++|+.+
T Consensus 76 ~~---------------------------~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 76 EI---------------------------VRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HH---------------------------HTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HH---------------------------hccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 00 0011223567888889999999999999999875
No 44
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=96.94 E-value=0.0035 Score=56.20 Aligned_cols=99 Identities=16% Similarity=0.280 Sum_probs=59.4
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh----------------h-hhhhh-cCCcCEEEE
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV----------------H-MLLES-FEPIHGVLL 69 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~----------------~-~l~~~-l~~~DGVIL 69 (421)
+...+|+|+..+.... .++. .-++.+..+|..+.++....+. + .+.+. .+.+|.||+
T Consensus 7 ~~~~~v~il~~~g~~~---~e~~--~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liv 81 (190)
T 2vrn_A 7 LTGKKIAILAADGVEE---IELT--SPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLL 81 (190)
T ss_dssp CTTCEEEEECCTTCBH---HHHH--HHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEE
T ss_pred CCCCEEEEEeCCCCCH---HHHH--HHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEE
Confidence 3446788887653321 1222 2346678888887766433210 0 11111 146899999
Q ss_pred CCCC-CCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 70 CEGE-DIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 70 ~GG~-didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
|||. +.+ . ...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 82 pGG~~~~~----~-------------------------~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 82 PGGTVNPD----K-------------------------LRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp CCCTHHHH----H-------------------------HTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred CCCchhHH----H-------------------------HhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 9995 210 0 0012234577888888999999999999999875
No 45
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=96.83 E-value=0.0059 Score=54.92 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=60.5
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-Ch-----------h-hhhhh-cCCcCEEEECCCC-
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GV-----------H-MLLES-FEPIHGVLLCEGE- 73 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~-----------~-~l~~~-l~~~DGVIL~GG~- 73 (421)
+.++|+|+..+.... .++. .-++.+..+|..+.++.... .+ + .+.+. .+.+|.||+|||.
T Consensus 4 m~kkv~ill~~g~~~---~e~~--~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~ 78 (190)
T 4e08_A 4 MSKSALVILAPGAEE---MEFI--IAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG 78 (190)
T ss_dssp CCCEEEEEECTTCCH---HHHH--HHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHH
T ss_pred CCcEEEEEECCCchH---HHHH--HHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCCh
Confidence 345778777654321 1222 23567888999887775432 11 0 12221 2368999999993
Q ss_pred CCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 74 DIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 74 didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
... +...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 79 ~~~-----------------------------~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 79 GSN-----------------------------AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHH-----------------------------HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred HHH-----------------------------HhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 100 00112234577888889999999999999999875
No 46
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=96.79 E-value=0.0027 Score=58.14 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=59.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC--------------hh-hhhhh-cCCcCEEEECCCC-
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG--------------VH-MLLES-FEPIHGVLLCEGE- 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--------------~~-~l~~~-l~~~DGVIL~GG~- 73 (421)
.+|+|+..+.... .++. .-++.+..+|..+.++....+ .+ .+.+. .+.+|+||+|||.
T Consensus 3 ~kV~ill~~g~~~---~e~~--~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~ 77 (205)
T 2ab0_A 3 ASALVCLAPGSEE---TEAV--TTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIK 77 (205)
T ss_dssp CEEEEEECTTCCH---HHHH--HHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHH
T ss_pred cEEEEEEcCCCcH---HHHH--HHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcc
Confidence 4678877654321 1222 235678889988877654322 01 12221 2579999999994
Q ss_pred CCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh-HHHHHH
Q 041791 74 DIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS-QVLNVA 140 (421)
Q Consensus 74 didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~-QlLava 140 (421)
..+ +...+.....+++.+.++++||.+||-|. ++|+.+
T Consensus 78 ~~~-----------------------------~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 78 GAE-----------------------------CFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHH-----------------------------HHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred cHH-----------------------------HhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 110 00112334577888889999999999999 999854
No 47
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.62 E-value=0.0092 Score=54.91 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=58.0
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHC-CCeEEEEcCCCC-----------hhhhhhhcCCcCEEEECCCCCCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY-GAVPVIVPRVTG-----------VHMLLESFEPIHGVLLCEGEDID 76 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~-----------~~~l~~~l~~~DGVIL~GG~did 76 (421)
.+++|+|+..+....-. +. .-.+.+... |..+.++....+ ...+.+..+.+|.||+|||.+.+
T Consensus 2 ~m~kV~ill~~g~~~~E---~~--~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~ 76 (206)
T 3f5d_A 2 SLKKALFLILDQYADWE---GV--YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWS 76 (206)
T ss_dssp -CEEEEEECCSSBCTTT---SH--HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCC
T ss_pred CccEEEEEEcCCCcHHH---HH--HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChh
Confidence 35688888876543222 11 234456666 666655543211 01122222369999999996421
Q ss_pred CCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 77 PSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 77 p~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
. . +.....+++.+.++++|+.+||-|.++|+.+
T Consensus 77 --~--~---------------------------~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 77 --N--D---------------------------NKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp --C--C---------------------------CHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred --h--c---------------------------CHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 1 1 1123467788888999999999999999875
No 48
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=96.59 E-value=0.013 Score=53.89 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+++.+.++++||.+||-|..+|+.+
T Consensus 94 l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 94 ILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp HHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 3567788888999999999999999875
No 49
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=96.56 E-value=0.014 Score=55.26 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
...+++.+.++++|+.+||-|..+|+.+.
T Consensus 140 l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 140 FKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp HHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 45778888899999999999999999874
No 50
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.53 E-value=0.0061 Score=54.77 Aligned_cols=95 Identities=15% Similarity=0.035 Sum_probs=56.6
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHH-CCCeEEEEcCCCC-----------hh-hhhhh-cCCcCEEEECCCCCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVS-YGAVPVIVPRVTG-----------VH-MLLES-FEPIHGVLLCEGEDID 76 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~-~Ga~~vivp~~~~-----------~~-~l~~~-l~~~DGVIL~GG~did 76 (421)
.+|+|+..+......+ . .-++.+.. .|..+.++....+ .+ .+.+. .+.+|.||+|||...+
T Consensus 2 ~~i~ill~~g~~~~e~---~--~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~ 76 (188)
T 2fex_A 2 TRIAIALAQDFADWEP---A--LLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE 76 (188)
T ss_dssp CEEEEECCTTBCTTSS---H--HHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH
T ss_pred cEEEEEeCCCchHHHH---H--HHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc
Confidence 4678887654322221 1 23456666 8887776654321 11 11111 1268999999996311
Q ss_pred CCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 77 PSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 77 p~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
. ... .....+++.+.++++||.+||-|.++|+.+
T Consensus 77 ~---~~~---------------------------~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 77 K---GTA---------------------------ADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp H---TCC---------------------------CCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred c---ccc---------------------------HHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 0 000 002356778888999999999999999875
No 51
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=96.36 E-value=0.012 Score=55.85 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+++.+.++++||-+||-|-.+|+.+
T Consensus 127 l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 127 LQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 4578899999999999999999998765
No 52
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=96.14 E-value=0.013 Score=55.39 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+++.+.++++||-+||-|-.+|+.+
T Consensus 120 l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 120 LQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 4578889999999999999999999765
No 53
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=96.13 E-value=0.0054 Score=59.80 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCC-eEEEEcCCC----ChhhhhhhcCCcCEEEECCCCCCCCCCccccc
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA-VPVIVPRVT----GVHMLLESFEPIHGVLLCEGEDIDPSLYDAEL 84 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~----~~~~l~~~l~~~DGVIL~GG~didp~~y~~~~ 84 (421)
.|+|++++.-+... +...+.|.++++++|+ .+..++... +.+++.+.+..+|+|+++||.. ..+
T Consensus 56 ~~~I~~IptAs~~~----~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt---~~l---- 124 (291)
T 3en0_A 56 DAIIGIIPSASREP----LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQ---LRL---- 124 (291)
T ss_dssp GCEEEEECTTCSSH----HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCH---HHH----
T ss_pred CCeEEEEeCCCCCh----HHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCH---HHH----
Confidence 37888887654321 2234567788999999 454555421 1233445667899999999952 111
Q ss_pred cCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcC-CCEEEEchhhHHHHH
Q 041791 85 SGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERN-IPYLGICRGSQVLNV 139 (421)
Q Consensus 85 ~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~-iPiLGIClG~QlLav 139 (421)
+ +..++.....+++.+.+++ +|+.|+|-|+-+++.
T Consensus 125 -------~-------------~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 125 -------C-------------GLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp -------H-------------HHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred -------H-------------HHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 1 1112233456778888888 999999999988754
No 54
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=96.05 E-value=0.016 Score=54.36 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
..++++.+.++++||.+||-|-.+|+.+
T Consensus 120 l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 120 LQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 4578888889999999999999988765
No 55
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.05 E-value=0.029 Score=51.47 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.+.+++.+.++++++.+||-|..+|+.+
T Consensus 97 l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 97 LFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp HHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 4577788888999999999999999876
No 56
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=95.88 E-value=0.064 Score=57.89 Aligned_cols=105 Identities=12% Similarity=-0.005 Sum_probs=61.9
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC--hh-hhhh-hcCCcCEEEECCCCCCCCCCccccccC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG--VH-MLLE-SFEPIHGVLLCEGEDIDPSLYDAELSG 86 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~-~l~~-~l~~~DGVIL~GG~didp~~y~~~~~~ 86 (421)
.+|+|+..... +.+.-..+-.++|+++|+.+++|-...+ .+ .+.. ....+|+||||||..-.|..-+. ...
T Consensus 538 rKVaILvadG~----fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~-~d~ 612 (688)
T 3ej6_A 538 LRVGVLSTTKG----GSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGA-MSP 612 (688)
T ss_dssp CEEEEECCSSS----SHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTT-CCT
T ss_pred CEEEEEccCCC----ccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccc-hhh
Confidence 46888876431 1122223456789999999988854321 11 1111 11258999999996311000000 000
Q ss_pred CChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 87 FAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 87 ~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+.-.+.+++.+.+.++||-.||-|-++|..+
T Consensus 613 --------------------Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 613 --------------------LFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp --------------------TSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred --------------------hccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 0011223578899999999999999999999765
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.81 E-value=0.034 Score=55.75 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=61.0
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh----------------------------hhhhhh-
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV----------------------------HMLLES- 60 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~----------------------------~~l~~~- 60 (421)
.++|+|+...... ..--..-++.++++|+.+.++.....+ ..+.+.
T Consensus 12 ~~kv~ill~dg~e-----~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 86 (396)
T 3uk7_A 12 SRTVLILCGDYME-----DYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVD 86 (396)
T ss_dssp CCEEEEECCTTEE-----HHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCC
T ss_pred CCeEEEEeCCCcc-----HHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcC
Confidence 4688888764332 111123456788999988877543211 011111
Q ss_pred cCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 61 FEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 61 l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.+.+|.||+|||.. +. + ...+.....+++.+.++++||.+||-|.++|+.+
T Consensus 87 ~~~~D~livpGG~~--~~-~--------------------------~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 87 LSKYDGLVIPGGRA--PE-Y--------------------------LALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GGGCSEEEECCBSH--HH-H--------------------------HTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred cccCCEEEECCCcc--hh-h--------------------------cccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 24689999999952 10 0 0011223577888889999999999999999876
No 58
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=95.79 E-value=0.03 Score=60.84 Aligned_cols=95 Identities=11% Similarity=-0.000 Sum_probs=61.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-----------hh-hhhhh-cCCcCEEEECCCCCCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-----------VH-MLLES-FEPIHGVLLCEGEDIDP 77 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-----------~~-~l~~~-l~~~DGVIL~GG~didp 77 (421)
.+|+|+......... ..+-++.|+++|+.+.+|-...+ .+ .+.+. ...+|+|||||| . +
T Consensus 601 rKVaILlaDGfEe~E-----l~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g--~ 672 (753)
T 3ttv_A 601 RVVAILLNDEVRSAD-----LLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-N--I 672 (753)
T ss_dssp CEEEEECCTTCCHHH-----HHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-C--G
T ss_pred CEEEEEecCCCCHHH-----HHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-C--h
Confidence 578888766443222 22446789999999887754321 01 11111 124899999999 3 1
Q ss_pred CCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 78 SLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 78 ~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
... ..+...+.+++.+.+.++||-+||-|-++|+.+
T Consensus 673 ~~L---------------------------r~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 673 ADI---------------------------ADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp GGT---------------------------TTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred HHh---------------------------hhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 110 112234578899999999999999999999765
No 59
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=95.70 E-value=0.042 Score=55.11 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=61.2
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh----------------------------hhhhhh
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV----------------------------HMLLES 60 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~----------------------------~~l~~~ 60 (421)
..++|+|+...... ..--..-++.|.++|+.+.++...... ..+.+.
T Consensus 204 ~~~ki~ill~dg~~-----~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~ 278 (396)
T 3uk7_A 204 ANKRILFLCGDYME-----DYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDL 278 (396)
T ss_dssp CCCEEEEECCTTEE-----HHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGC
T ss_pred ccceEEEEecCCCc-----chhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHC
Confidence 44678888765432 111123456788899988877543211 011111
Q ss_pred -cCCcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHH
Q 041791 61 -FEPIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNV 139 (421)
Q Consensus 61 -l~~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLav 139 (421)
.+.+|.||+|||.. +... ..+.....+++.+.++++||.+||-|.++|+.
T Consensus 279 ~~~~~D~livpGg~~--~~~~---------------------------~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~ 329 (396)
T 3uk7_A 279 VSSSYDALVIPGGRA--PEYL---------------------------ALNEHVLNIVKEFMNSEKPVASICHGQQILAA 329 (396)
T ss_dssp CGGGCSEEEECCBSH--HHHH---------------------------TTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHH
T ss_pred CcccCCEEEECCCcc--hhhh---------------------------ccCHHHHHHHHHHHHCCCEEEEEchHHHHHHH
Confidence 24689999999952 1000 01122356778888999999999999999987
Q ss_pred H
Q 041791 140 A 140 (421)
Q Consensus 140 a 140 (421)
+
T Consensus 330 a 330 (396)
T 3uk7_A 330 A 330 (396)
T ss_dssp T
T ss_pred c
Confidence 6
No 60
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.53 E-value=0.013 Score=51.85 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 112 IELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 112 ~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
....+++.+.++++||.+||-|.++|+.+
T Consensus 92 ~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 92 DLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp HHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 34677888889999999999999999876
No 61
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=95.41 E-value=0.045 Score=49.88 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 114 LRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 114 l~li~~ale~~iPiLGIClG~QlLava 140 (421)
..+++.+.++++++.+||-|..+|+.+
T Consensus 91 ~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 91 DRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp HHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 456777788899999999999999876
No 62
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=95.35 E-value=0.031 Score=51.09 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=59.4
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-Ch-----------h-hhhhh-cCCcCEEEECCCC-C
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-GV-----------H-MLLES-FEPIHGVLLCEGE-D 74 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~~-----------~-~l~~~-l~~~DGVIL~GG~-d 74 (421)
.++|+|+..+.... .++. .-++.+..+|..+.++.... .+ + .+.+. .+.+|.||+|||. .
T Consensus 9 ~~~v~ill~~g~~~---~e~~--~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 83 (208)
T 3ot1_A 9 SKRILVPVAHGSEE---METV--IIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83 (208)
T ss_dssp CCEEEEEECTTCCH---HHHH--HHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHH
T ss_pred CCeEEEEECCCCcH---HHHH--HHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchH
Confidence 46888887764321 1222 23567788898877665431 10 0 12221 2468999999994 1
Q ss_pred CCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh-HHHHHH
Q 041791 75 IDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS-QVLNVA 140 (421)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~-QlLava 140 (421)
.+ +...+.....+++.+.++++||.+||-|. .+|+.+
T Consensus 84 ~~-----------------------------~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 84 AQ-----------------------------AFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HH-----------------------------HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HH-----------------------------HHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 10 00112234577888889999999999998 888753
No 63
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=95.12 E-value=0.058 Score=50.35 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.+.+++.+.+++++|.+||-|..+|+.+
T Consensus 86 l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 86 ALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp HHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 3567788888999999999999999865
No 64
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=95.00 E-value=0.075 Score=57.42 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=62.5
Q ss_pred cEEEEEec--cccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC--hh-hhhh-hcCCcCEEEECCCC-C-CCCCCccc
Q 041791 11 PRVLIVSR--RTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG--VH-MLLE-SFEPIHGVLLCEGE-D-IDPSLYDA 82 (421)
Q Consensus 11 P~igI~~~--~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~-~l~~-~l~~~DGVIL~GG~-d-idp~~y~~ 82 (421)
.+|+|+.. .... ..-...-+++|+++|+.+++|-...+ .+ .+.+ ....+|+||||||. + +.+..+-.
T Consensus 530 ~kVaIL~a~~dGfe-----~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~ 604 (688)
T 2iuf_A 530 LKVGLLASVNKPAS-----IAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTV 604 (688)
T ss_dssp CEEEEECCTTCHHH-----HHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTC
T ss_pred CEEEEEecCCCCCc-----HHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccc
Confidence 57888876 3221 22223456789999999988864321 11 1111 12358999999995 2 11100000
Q ss_pred cccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 83 ELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 83 ~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
... ..+..-....+.--+.+++.+.+.++||-.||-|-++|..+
T Consensus 605 ~~~--------------~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 605 EPS--------------AGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp CCC--------------TTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred ccc--------------cccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 000 00000001112234678899999999999999999988754
No 65
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=94.69 E-value=0.099 Score=52.43 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=59.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh-----hhh--------hhhc--CCcCEEEECCCCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV-----HML--------LESF--EPIHGVLLCEGED 74 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~-----~~l--------~~~l--~~~DGVIL~GG~d 74 (421)
+.+|+|+..+.... .++. .-++.+..+|..+.++....+. .-+ .+.+ +.+|.||+|||.+
T Consensus 10 mkkV~ILl~dgf~~---~El~--~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g 84 (365)
T 3fse_A 10 KKKVAILIEQAVED---TEFI--IPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMA 84 (365)
T ss_dssp -CEEEEECCTTBCH---HHHH--HHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTH
T ss_pred ceEEEEEECCCCcH---HHHH--HHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcc
Confidence 35788887664321 1222 2356788889887766433221 000 1111 2589999999962
Q ss_pred CCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 75 IDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava 140 (421)
. ... ..+.....+++.+.++++||.+||-|..+|+.+
T Consensus 85 ~--~~l---------------------------~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 85 P--DKM---------------------------RRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp H--HHH---------------------------TTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred h--hhc---------------------------cCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 1 000 011224577888889999999999999999875
No 66
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=94.47 E-value=0.12 Score=56.14 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-----------h-hhhhhh-cCCcCEEEECCCC-C
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-----------V-HMLLES-FEPIHGVLLCEGE-D 74 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-----------~-~~l~~~-l~~~DGVIL~GG~-d 74 (421)
...+|+|+....... .++ ..-++.+..+|+.+.++....+ . ..+.+. ...+|+||||||. .
T Consensus 533 ~~rkVaILl~dGfe~---~El--~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~ 607 (715)
T 1sy7_A 533 KSRRVAIIIADGYDN---VAY--DAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKA 607 (715)
T ss_dssp TTCEEEEECCTTBCH---HHH--HHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHH
T ss_pred CCCEEEEEEcCCCCH---HHH--HHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCccc
Confidence 335788887754321 111 2345678889998887754321 0 111111 1358999999993 2
Q ss_pred CCCCCccccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhhHHHHHHhC
Q 041791 75 IDPSLYDAELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACG 142 (421)
Q Consensus 75 idp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~QlLava~G 142 (421)
.+ +...+.....+++.+.+.++||.+||-|..+|+.++|
T Consensus 608 ~~-----------------------------~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 608 AE-----------------------------TLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HH-----------------------------HHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred Hh-----------------------------hhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 10 0011223457788888999999999999999998754
No 67
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=94.35 E-value=0.021 Score=52.56 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
...+++.+.++++||.+||-|.++|+.+
T Consensus 111 l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 111 LQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 4577888889999999999999998765
No 68
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=94.21 E-value=0.15 Score=48.42 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.+.+++.+.+++++|.+||-|..+|+.+
T Consensus 106 l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 106 TLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 4567788888999999999999999875
No 69
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=92.74 E-value=0.07 Score=48.98 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHH
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVA 140 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava 140 (421)
.+.+++.+.+++++|.+||-|..+|+.+
T Consensus 86 ~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 86 FINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 4567788888999999999999999875
No 70
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=92.61 E-value=0.068 Score=51.74 Aligned_cols=29 Identities=7% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCCEEEEchhhHHHHHHh
Q 041791 113 ELRLAKLCLERNIPYLGICRGSQVLNVAC 141 (421)
Q Consensus 113 el~li~~ale~~iPiLGIClG~QlLava~ 141 (421)
...+++++.++++||.+||-|-.+|+.+.
T Consensus 167 l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 167 VAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred HHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 45788888899999999999999877653
No 71
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=92.25 E-value=0.34 Score=43.16 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=46.9
Q ss_pred CCCCCcCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcC-CCChhhhh----hhcC--CcCEEEECCCC
Q 041791 1 MGSSDLSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPR-VTGVHMLL----ESFE--PIHGVLLCEGE 73 (421)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~-~~~~~~l~----~~l~--~~DGVIL~GG~ 73 (421)
|+.+..+..+|+|+|++-.+. .+...+.-......+|.++|+.++.... .++.+.+. +.++ .+|-||.+||.
T Consensus 1 ~~~~~~~~~~~~v~Ii~tGdE-~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~ 79 (172)
T 1mkz_A 1 MSQVSTEFIPTRIAILTVSNR-RGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGT 79 (172)
T ss_dssp --CCCSSCCCCEEEEEEECSS-CCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCC
T ss_pred CCCCCCCCCCCEEEEEEEeCC-CCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 566666777899999997654 3444454444556678899998763322 13444433 3344 38999999997
Q ss_pred CCC
Q 041791 74 DID 76 (421)
Q Consensus 74 did 76 (421)
.+.
T Consensus 80 g~~ 82 (172)
T 1mkz_A 80 GLT 82 (172)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
No 72
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=90.64 E-value=0.18 Score=44.67 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=39.8
Q ss_pred CCCCcEEEEEecccc-CcccchhhhhhHHHHHHHHCCCeEE---EEcCCCChhhhh----hhcC-CcCEEEECCCCCCC
Q 041791 7 SMILPRVLIVSRRTV-RKNKFVDFVGEYHLDLIVSYGAVPV---IVPRVTGVHMLL----ESFE-PIHGVLLCEGEDID 76 (421)
Q Consensus 7 ~~~~P~igI~~~~~~-~~~~~~~~v~~~yl~~l~~~Ga~~v---ivp~~~~~~~l~----~~l~-~~DGVIL~GG~did 76 (421)
+|.+|+|+|++..+. ..++..|.-......++.++|+.++ ++| ++ +.+. +.++ .+|-||.+||..+.
T Consensus 4 ~~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittGG~s~g 79 (164)
T 3pzy_A 4 SMTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSGGTGIA 79 (164)
T ss_dssp ---CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CCCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 677899999997642 2344444333444567888999875 444 23 4443 3343 79999999997654
No 73
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=87.32 E-value=1.1 Score=39.61 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=42.0
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhh----hhhhcC--CcCEEEECCCCCCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHM----LLESFE--PIHGVLLCEGEDID 76 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~----l~~~l~--~~DGVIL~GG~did 76 (421)
.+|+|+|++-.+.- ++..|.-......+|.++|+.++..... ++.+. +.+.++ .+|-||.+||..+.
T Consensus 12 ~~~rv~Ii~tGdEl-g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 85 (169)
T 1y5e_A 12 KEVRCKIVTISDTR-TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGIT 85 (169)
T ss_dssp CCCEEEEEEECSSC-CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSS
T ss_pred cCCEEEEEEEcCcc-CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 45899999966533 4444444444556788899987633222 33333 334556 79999999997543
No 74
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=85.22 E-value=0.99 Score=40.84 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=43.8
Q ss_pred CCCCcEEEEEecccc-CcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhc-CCcCEEEECCCCCCCC
Q 041791 7 SMILPRVLIVSRRTV-RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESF-EPIHGVLLCEGEDIDP 77 (421)
Q Consensus 7 ~~~~P~igI~~~~~~-~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l-~~~DGVIL~GG~didp 77 (421)
...+|+|+|++..+. ..++ .|.-......++.++|+.++..... ++.+.+. +.+ +.+|-||.+||..+.+
T Consensus 27 ~~~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~ 103 (185)
T 3rfq_A 27 ELVVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTP 103 (185)
T ss_dssp --CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 446799999997652 2344 5544445566888999987633321 3444333 334 5799999999976543
No 75
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=84.74 E-value=1.3 Score=39.60 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=43.6
Q ss_pred CCCCcEEEEEeccccC-----c-ccchhhhhhHHHHHHHHCCCeEEEEcC-CCChhhhh----hhcCC--cCEEEECCCC
Q 041791 7 SMILPRVLIVSRRTVR-----K-NKFVDFVGEYHLDLIVSYGAVPVIVPR-VTGVHMLL----ESFEP--IHGVLLCEGE 73 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~-----~-~~~~~~v~~~yl~~l~~~Ga~~vivp~-~~~~~~l~----~~l~~--~DGVIL~GG~ 73 (421)
...+|+|+|++..+.. . ++..|.-......++.++|+.++.... .++.+.+. +.++. +|-||.+||.
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3456999999976521 2 444454444455678899998764322 23444443 44455 8999999997
Q ss_pred CCC
Q 041791 74 DID 76 (421)
Q Consensus 74 did 76 (421)
.+.
T Consensus 92 s~g 94 (178)
T 2pjk_A 92 GYS 94 (178)
T ss_dssp SSS
T ss_pred CCC
Confidence 554
No 76
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=81.76 E-value=0.46 Score=44.48 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=15.9
Q ss_pred HcCC-CEEEEchhhHHHHHH
Q 041791 122 ERNI-PYLGICRGSQVLNVA 140 (421)
Q Consensus 122 e~~i-PiLGIClG~QlLava 140 (421)
+++. +|.+||-|-.+|+.+
T Consensus 109 ~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 109 DPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp CTTTCEEEEETTHHHHHHHT
T ss_pred CCCCCEEEEEcHHHHHHHHc
Confidence 3455 999999999999875
No 77
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=81.54 E-value=1.1 Score=40.84 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=38.5
Q ss_pred CCCcEEEEEeccc-cCcccchhhhhhHHHHHHHHCCCe--EE---EEcCCCChhhhh----hhcC--CcCEEEECCCCCC
Q 041791 8 MILPRVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAV--PV---IVPRVTGVHMLL----ESFE--PIHGVLLCEGEDI 75 (421)
Q Consensus 8 ~~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~--~v---ivp~~~~~~~l~----~~l~--~~DGVIL~GG~di 75 (421)
|.+|+|+|++-.+ ...++..|.-+.....+|.++|+. ++ ++| ++.+.+. +.++ .+|-||.+||..+
T Consensus 1 ~~~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitTGGtg~ 78 (195)
T 1di6_A 1 MATLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTTGGTGP 78 (195)
T ss_dssp -CCEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 3578999998654 234444454444455678888876 32 444 3333333 3444 5899999999765
Q ss_pred CC
Q 041791 76 DP 77 (421)
Q Consensus 76 dp 77 (421)
.+
T Consensus 79 g~ 80 (195)
T 1di6_A 79 AR 80 (195)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 78
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=81.07 E-value=1.5 Score=41.80 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=48.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC------hh--hhhhhcCCcCEEEECCCCCCCCCCcc
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG------VH--MLLESFEPIHGVLLCEGEDIDPSLYD 81 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~------~~--~l~~~l~~~DGVIL~GG~didp~~y~ 81 (421)
+.+|+|+.++... .. .-.....++++.+.|..+++.+.... .. .....-+.+|.||..||-
T Consensus 5 mkki~ii~np~~~--~~-~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGD-------- 73 (292)
T 2an1_A 5 FKCIGIVGHPRHP--TA-LTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGD-------- 73 (292)
T ss_dssp CCEEEEECC----------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCH--------
T ss_pred CcEEEEEEcCCCH--HH-HHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCc--------
Confidence 3689999998632 11 12334567889999998766542100 00 001112358999999992
Q ss_pred ccccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHHHHcCCCEEEEchhh
Q 041791 82 AELSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGS 134 (421)
Q Consensus 82 ~~~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~ale~~iPiLGIClG~ 134 (421)
-.-...++.+...++|+|||=.|.
T Consensus 74 -----------------------------GT~l~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 74 -----------------------------GNMLGAARTLARYDINVIGINRGN 97 (292)
T ss_dssp -----------------------------HHHHHHHHHHTTSSCEEEEBCSSS
T ss_pred -----------------------------HHHHHHHHHhhcCCCCEEEEECCC
Confidence 112345555556689999997663
No 79
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=79.88 E-value=1.6 Score=39.03 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=41.3
Q ss_pred CCcEEEEEeccc-cCcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEEEECCCCCC
Q 041791 9 ILPRVLIVSRRT-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGVLLCEGEDI 75 (421)
Q Consensus 9 ~~P~igI~~~~~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGVIL~GG~di 75 (421)
+.|+++|++-.+ ...++..+.-.....+++.++|+.+..+... ++.+.+. +.++.+|-||.+||.++
T Consensus 2 ~~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~ 74 (172)
T 3kbq_A 2 NAKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGP 74 (172)
T ss_dssp --CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred CCCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 348899998764 2234444544445566888999987643322 3444443 34456899999999654
No 80
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=79.59 E-value=10 Score=34.62 Aligned_cols=64 Identities=9% Similarity=0.025 Sum_probs=41.0
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
|....+|||+.... .+.+..-+-....+.+.+.|...++.....+.+...+.+ .++||||+.+.
T Consensus 2 s~~~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 2 SLEGKTIGITAIGT--DHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp CCTTCEEEEEESCC--SSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred CCCCcEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34456889887642 244545555666778889999988886555432212111 37999999865
No 81
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=79.33 E-value=2.6 Score=40.51 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=33.2
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG 72 (421)
+|+|+.++... .+...+++++.|..+.+..... ..++.+|-||.-||
T Consensus 31 ki~iv~~~~~~--------~~~l~~~L~~~g~~v~~~~~~~------~~~~~~DlvIvlGG 77 (278)
T 1z0s_A 31 RAAVVYKTDGH--------VKRIEEALKRLEVEVELFNQPS------EELENFDFIVSVGG 77 (278)
T ss_dssp EEEEEESSSTT--------HHHHHHHHHHTTCEEEEESSCC------GGGGGSSEEEEEEC
T ss_pred EEEEEeCCcHH--------HHHHHHHHHHCCCEEEEccccc------cccCCCCEEEEECC
Confidence 58899887543 4456778999999877654321 12347899999999
No 82
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=78.95 E-value=1.9 Score=38.85 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=38.4
Q ss_pred CCCCcCCC-CcEEEEEecccc-CcccchhhhhhHHHHHHHH---CCCeEEEEcC-CCChhhhh----hhcC--CcCEEEE
Q 041791 2 GSSDLSMI-LPRVLIVSRRTV-RKNKFVDFVGEYHLDLIVS---YGAVPVIVPR-VTGVHMLL----ESFE--PIHGVLL 69 (421)
Q Consensus 2 ~~~~~~~~-~P~igI~~~~~~-~~~~~~~~v~~~yl~~l~~---~Ga~~vivp~-~~~~~~l~----~~l~--~~DGVIL 69 (421)
|.+..... +|+|+|++-.+. ..+...+.-......+|.+ +|+.++.... .++.+.+. +.++ .+|-||.
T Consensus 5 g~~~v~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIt 84 (189)
T 1jlj_A 5 GMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILT 84 (189)
T ss_dssp --------CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CcccccccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEE
Confidence 34444443 589999997542 2233333333333445665 7987763322 13344333 3444 6899999
Q ss_pred CCCCCCC
Q 041791 70 CEGEDID 76 (421)
Q Consensus 70 ~GG~did 76 (421)
+||..+.
T Consensus 85 tGGtg~g 91 (189)
T 1jlj_A 85 TGGTGFA 91 (189)
T ss_dssp ESCCSSS
T ss_pred cCCCCCC
Confidence 9997654
No 83
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=78.60 E-value=1.7 Score=38.77 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=38.0
Q ss_pred CCCCcEEEEEecccc-CcccchhhhhhHHHHHHH---HCCCeEEEEcCCCChhhh----hhhcC--CcCEEEECCCCCCC
Q 041791 7 SMILPRVLIVSRRTV-RKNKFVDFVGEYHLDLIV---SYGAVPVIVPRVTGVHML----LESFE--PIHGVLLCEGEDID 76 (421)
Q Consensus 7 ~~~~P~igI~~~~~~-~~~~~~~~v~~~yl~~l~---~~Ga~~vivp~~~~~~~l----~~~l~--~~DGVIL~GG~did 76 (421)
+..+|+|+|++-.+. ..++..|.-......++. .+|+.+......++.+.+ .+.++ .+|-||.+||..+.
T Consensus 2 ~~~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g 81 (178)
T 2pbq_A 2 SEKKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPA 81 (178)
T ss_dssp ---CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CCCCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 445789999996542 233333333333334455 689876321112344333 34444 68999999997543
No 84
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=78.55 E-value=5 Score=38.20 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=41.5
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhcC---CcCEEEECC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESFE---PIHGVLLCE 71 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l~---~~DGVIL~G 71 (421)
.+++||++..... .+.|...+.....+++.+.|..++++....+.+. +...+. ++||||+.+
T Consensus 2 ~~~~Ig~i~p~~~-~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 2 SLTSVVFLNPGNS-TETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp -CCEEEEEECSCT-TCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCCEEEEECCCCC-CChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 3578998886532 3355566666777788889999888765554432 333343 899999985
No 85
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=78.49 E-value=1.3 Score=38.99 Aligned_cols=67 Identities=10% Similarity=-0.051 Sum_probs=39.2
Q ss_pred CcEEEEEecccc-CcccchhhhhhHHHHHHHHCCCeEEEEcC-CCChhhhh----hhcC--CcCEEEECCCCCCC
Q 041791 10 LPRVLIVSRRTV-RKNKFVDFVGEYHLDLIVSYGAVPVIVPR-VTGVHMLL----ESFE--PIHGVLLCEGEDID 76 (421)
Q Consensus 10 ~P~igI~~~~~~-~~~~~~~~v~~~yl~~l~~~Ga~~vivp~-~~~~~~l~----~~l~--~~DGVIL~GG~did 76 (421)
+|+|+|++-.+. ..++..+.-......+|.++|+.++.... .++.+.+. +.++ .+|-||.+||..+.
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 378888886542 23333343333445567788987753322 13433333 4444 68999999997543
No 86
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=76.63 E-value=1.1 Score=40.31 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=17.0
Q ss_pred HHHHHHHHH-cCCCEEEEchhhHHH
Q 041791 114 LRLAKLCLE-RNIPYLGICRGSQVL 137 (421)
Q Consensus 114 l~li~~ale-~~iPiLGIClG~QlL 137 (421)
..+++.+.+ .++|+-.||-|..++
T Consensus 96 ~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 96 QQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred HHHHHHhhhcCCceEEeecccccch
Confidence 456666554 478999999998443
No 87
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=76.35 E-value=6.5 Score=37.79 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=24.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEc
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVP 49 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp 49 (421)
.+|+|+.++.... ... ......++|.+.|..+++..
T Consensus 5 ~ki~iI~n~~~~~--~~~-~~~~l~~~L~~~g~~v~~~~ 40 (307)
T 1u0t_A 5 RSVLLVVHTGRDE--ATE-TARRVEKVLGDNKIALRVLS 40 (307)
T ss_dssp CEEEEEESSSGGG--GSH-HHHHHHHHHHTTTCEEEEEC
T ss_pred CEEEEEEeCCCHH--HHH-HHHHHHHHHHHCCCEEEEec
Confidence 4799999985421 112 33456788999998876654
No 88
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=76.29 E-value=10 Score=34.79 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=40.2
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChh---hhhhhc--CCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVH---MLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~l--~~~DGVIL~GG 72 (421)
...+|||+.......+.|..-+-....+.+.+.|..+++.....+.+ .+.+.+ ..+||||+.+.
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 34678888764332235555565666777888999888776543322 222222 47999999864
No 89
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=75.85 E-value=2.9 Score=42.32 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=42.2
Q ss_pred CCcEEEEEecccc--------CcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEEEECCCCCC
Q 041791 9 ILPRVLIVSRRTV--------RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGVLLCEGEDI 75 (421)
Q Consensus 9 ~~P~igI~~~~~~--------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGVIL~GG~di 75 (421)
.+|+|+|++..+. ..++..+.-......++.++|+.++.+... ++.+.+. +.++.+|-||.+||.++
T Consensus 176 ~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s~ 255 (411)
T 1g8l_A 176 RKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSV 255 (411)
T ss_dssp CCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSCS
T ss_pred CCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCCC
Confidence 3699999996541 134444444344456788899988743322 3444433 34456899999999765
Q ss_pred C
Q 041791 76 D 76 (421)
Q Consensus 76 d 76 (421)
.
T Consensus 256 g 256 (411)
T 1g8l_A 256 G 256 (411)
T ss_dssp S
T ss_pred C
Confidence 4
No 90
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=75.38 E-value=1.5 Score=38.58 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=37.1
Q ss_pred CCcEEEEEecccc-CcccchhhhhhHHHHH----HHHCCCeEEEEcCC-CChhhhh----hhcC-CcCEEEECCCCCCC
Q 041791 9 ILPRVLIVSRRTV-RKNKFVDFVGEYHLDL----IVSYGAVPVIVPRV-TGVHMLL----ESFE-PIHGVLLCEGEDID 76 (421)
Q Consensus 9 ~~P~igI~~~~~~-~~~~~~~~v~~~yl~~----l~~~Ga~~vivp~~-~~~~~l~----~~l~-~~DGVIL~GG~did 76 (421)
+.|+++|++-.+. ..++..|.-.....++ +.++|+.++.+... ++.+.+. +.++ .+|-||.+||..+.
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~ 82 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIR 82 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 4589999986542 2333333333334456 78889877533221 3343333 3444 49999999997543
No 91
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=74.81 E-value=9.4 Score=36.94 Aligned_cols=98 Identities=13% Similarity=-0.015 Sum_probs=59.0
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC--hhhhh-hh-cCCcCEEEECCCCCCCCCCcccc
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG--VHMLL-ES-FEPIHGVLLCEGEDIDPSLYDAE 83 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~~l~-~~-l~~~DGVIL~GG~didp~~y~~~ 83 (421)
|++.+++|+.++....++..... ....+++.++|..+.+...... ...+. +. .+.+|.||..||-.
T Consensus 22 m~m~~i~vI~NP~sg~~~~~~~~-~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG--------- 91 (337)
T 2qv7_A 22 MMRKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG--------- 91 (337)
T ss_dssp SCCEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH---------
T ss_pred cccceEEEEECCCCCCCchHHHH-HHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch---------
Confidence 44567999999876544433323 4567788889987766553321 11111 22 24689999999921
Q ss_pred ccCCChhhHHHHHhhccCccccchhhhHHHHHHHHHH--HHcCCCEEEEchhhH-HHHHHhCC
Q 041791 84 LSGFAPEELEEIRALHASDTAIDKEKDTIELRLAKLC--LERNIPYLGICRGSQ-VLNVACGG 143 (421)
Q Consensus 84 ~~~~~~e~~~~i~~~~~~~~~~d~~rd~~el~li~~a--le~~iPiLGIClG~Q-lLava~GG 143 (421)
.-.++++.+ ...++|+.+|=.|-- .++..+|.
T Consensus 92 ----------------------------Tv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg~ 126 (337)
T 2qv7_A 92 ----------------------------TLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHI 126 (337)
T ss_dssp ----------------------------HHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTC
T ss_pred ----------------------------HHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcCC
Confidence 112344444 346789999988864 56666653
No 92
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=73.86 E-value=5.5 Score=33.56 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=44.8
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhhhhhcC--CcCEEEECCCCCCCCCCccccccCCChhhHHHHHhhccCccccchhh
Q 041791 32 EYHLDLIVSYGAVPVIVPRVTGVHMLLESFE--PIHGVLLCEGEDIDPSLYDAELSGFAPEELEEIRALHASDTAIDKEK 109 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~--~~DGVIL~GG~didp~~y~~~~~~~~~e~~~~i~~~~~~~~~~d~~r 109 (421)
+.+++.+...-...+++|-+.. +.+...++ ++-+|||+||..+++
T Consensus 42 ~~~~~~~~~~~~~l~I~~G~r~-~~~l~a~~~~~~~~iIlt~g~~~~~-------------------------------- 88 (139)
T 2ioj_A 42 QSALRYLREARNAALVTGGDRS-DLLLTALEMPNVRCLILTGNLEPVQ-------------------------------- 88 (139)
T ss_dssp HHHHHHHHTCSSEEEEEETTCH-HHHHHHTTCTTEEEEEEETTCCCCH--------------------------------
T ss_pred HHHHHHHhcCCCEEEEEcCCHH-HHHHHHHhCCCCcEEEEcCCCCCCH--------------------------------
Confidence 3566666643235666766543 44455554 788999999964321
Q ss_pred hHHHHHHHHHHHHcCCCEEEEchhhHHHHH
Q 041791 110 DTIELRLAKLCLERNIPYLGICRGSQVLNV 139 (421)
Q Consensus 110 d~~el~li~~ale~~iPiLGIClG~QlLav 139 (421)
.+++.|.+.++|+|-+=...--.+.
T Consensus 89 -----~i~~~A~~~~ipvl~t~~~T~~~~~ 113 (139)
T 2ioj_A 89 -----LVLTKAEERGVPVILTGHDTLTAVS 113 (139)
T ss_dssp -----HHHHHHHHHTCCEEECSSCHHHHHH
T ss_pred -----HHHHHHHHCCCeEEEECCCHHHHHH
Confidence 3446666789999998776654443
No 93
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=73.12 E-value=2.9 Score=42.09 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=37.2
Q ss_pred CCcEEEEEecccc-C---------cccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhh----hhhhcCCcCEEEECCCC
Q 041791 9 ILPRVLIVSRRTV-R---------KNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHM----LLESFEPIHGVLLCEGE 73 (421)
Q Consensus 9 ~~P~igI~~~~~~-~---------~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~----l~~~l~~~DGVIL~GG~ 73 (421)
.+|+|+|++..+. . .++..+.-......++.++|+.++.+... ++.+. +.+.++.+|-||.+||.
T Consensus 181 ~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~ 260 (396)
T 1wu2_A 181 VKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGS 260 (396)
T ss_dssp CCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC---
T ss_pred CCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 3699999996542 1 13334433334456788899988643322 33333 33445578999999997
Q ss_pred CCCC
Q 041791 74 DIDP 77 (421)
Q Consensus 74 didp 77 (421)
++.+
T Consensus 261 s~g~ 264 (396)
T 1wu2_A 261 AFGD 264 (396)
T ss_dssp ----
T ss_pred CCCh
Confidence 5543
No 94
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=72.69 E-value=2.5 Score=42.65 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCcEEEEEecccc--------CcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEEEECCCCCC
Q 041791 9 ILPRVLIVSRRTV--------RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGVLLCEGEDI 75 (421)
Q Consensus 9 ~~P~igI~~~~~~--------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGVIL~GG~di 75 (421)
.+|+|+|++..+. ..++..+.-......+++++|+.++.+... ++.+.+. +.++.+|-||.+||.++
T Consensus 179 ~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~ 258 (402)
T 1uz5_A 179 RKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASG 258 (402)
T ss_dssp CCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC--
T ss_pred CCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 3699999996542 133444433334456778889988743322 3344433 34456899999999754
Q ss_pred C
Q 041791 76 D 76 (421)
Q Consensus 76 d 76 (421)
.
T Consensus 259 g 259 (402)
T 1uz5_A 259 G 259 (402)
T ss_dssp -
T ss_pred C
Confidence 3
No 95
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=72.53 E-value=18 Score=32.85 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=40.7
Q ss_pred CCcEEEEEecccc---CcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTV---RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~---~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG 72 (421)
...+|||+..... ..+.|..-+-....+.+.+.|...++.....+.+. +.+.+ ..+||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 78 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYS 78 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 3467898876521 34555555666677888899998887665433322 11222 47999999875
No 96
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=72.40 E-value=17 Score=33.47 Aligned_cols=62 Identities=5% Similarity=-0.042 Sum_probs=39.7
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC--CChhhhhhh-----cCCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV--TGVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~-----l~~~DGVIL~GG 72 (421)
.+-+||++.... .+.+..-+.....+++.+.|..+++.... .+.+...+. -.++||||+.+.
T Consensus 2 ~~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 2 VRDKYYLITHGS--QDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp -CCEEEEECSCC--CSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred ceEEEEEEecCC--CCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 356788887653 35555666667777888899988877643 233221111 137999999865
No 97
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=72.38 E-value=21 Score=32.53 Aligned_cols=62 Identities=6% Similarity=-0.082 Sum_probs=40.2
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
...+|||+.... .+.+..-+-....+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 7 ~~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 7 KRNIVGFTIVND--KHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp --CEEEEEESCS--CSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcEEEEEEecC--CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 346889888542 345555566667778889999988887655543222111 37999999865
No 98
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=71.39 E-value=28 Score=31.52 Aligned_cols=62 Identities=5% Similarity=-0.020 Sum_probs=40.6
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh-----cCCcCEEEECCCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES-----FEPIHGVLLCEGE 73 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----l~~~DGVIL~GG~ 73 (421)
..+|||+.... .+.|..-+-...-+.+.+.|..+++.....+.+...+. -.++||||+.+..
T Consensus 15 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 15 NKTIGVLTTYI--SDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CCEEEEEESCS--SSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred CceEEEEeCCC--CchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 36888887542 34455555566677888999998887755443322111 1379999998753
No 99
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=70.31 E-value=18 Score=32.80 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=41.0
Q ss_pred CCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh---hhc--CCcCEEEECCC
Q 041791 7 SMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL---ESF--EPIHGVLLCEG 72 (421)
Q Consensus 7 ~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGVIL~GG 72 (421)
+....+|||+.... .+.+..-+-....+.+.+.|..+++.....+.+... +.+ ..+||||+.+.
T Consensus 4 ~~~s~~Igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 72 (276)
T 3jy6_A 4 TQSSKLIAVIVANI--DDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSF 72 (276)
T ss_dssp -CCCCEEEEEESCT--TSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESS
T ss_pred CCCCcEEEEEeCCC--CchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 34456888887542 344555555666778888999988877655433211 111 37999999876
No 100
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=70.11 E-value=10 Score=33.19 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=41.3
Q ss_pred CCcEEEEEecccc------CcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhhhh------cCCcCEEEECCCCCC
Q 041791 9 ILPRVLIVSRRTV------RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLLES------FEPIHGVLLCEGEDI 75 (421)
Q Consensus 9 ~~P~igI~~~~~~------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~~~------l~~~DGVIL~GG~di 75 (421)
.+++|+|++-.+. ..+...|--+.+..++|.++|+.++..... ++.+.+.+. .+.+|-||.+||-.+
T Consensus 14 ~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 3468999885432 223444555556677899999988633322 334444332 246899999999643
No 101
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=69.80 E-value=15 Score=33.40 Aligned_cols=59 Identities=7% Similarity=-0.029 Sum_probs=37.4
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG 72 (421)
..+||++.... .+.+..-+-....+.+.+.|...+++....+.+.... + .+||||+.+.
T Consensus 8 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~-~-~vdgiI~~~~ 66 (277)
T 3cs3_A 8 TNIIGVYLADY--GGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE-K-MVDGAIILDW 66 (277)
T ss_dssp CCEEEEEECSS--CTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT-T-TCSEEEEECT
T ss_pred CcEEEEEecCC--CChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh-c-cccEEEEecC
Confidence 46788887532 2444444555566778889998877765433332222 2 7999999875
No 102
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=69.68 E-value=17 Score=33.44 Aligned_cols=65 Identities=11% Similarity=-0.035 Sum_probs=40.4
Q ss_pred CCCcEEEEEeccc---cCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCC
Q 041791 8 MILPRVLIVSRRT---VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEG 72 (421)
Q Consensus 8 ~~~P~igI~~~~~---~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG 72 (421)
....+|||+.... ...+.|..-+-....+.+.+.|...++.....+.+. +.+.+ ..+||||+.+.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 3446899987432 224555555666667788889998877665433221 22222 47999999865
No 103
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=68.61 E-value=6.1 Score=34.54 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=37.4
Q ss_pred CCCCcEEEEEecccc-CcccchhhhhhHHHHHHHHC-----CCeEEEEcCC-CChhhhh----hhc--CCcCEEEECCCC
Q 041791 7 SMILPRVLIVSRRTV-RKNKFVDFVGEYHLDLIVSY-----GAVPVIVPRV-TGVHMLL----ESF--EPIHGVLLCEGE 73 (421)
Q Consensus 7 ~~~~P~igI~~~~~~-~~~~~~~~v~~~yl~~l~~~-----Ga~~vivp~~-~~~~~l~----~~l--~~~DGVIL~GG~ 73 (421)
+..+|+|+|++-.+. ..+...+.-.....+.+.++ |+.++.+... ++.+.+. +.+ +.+|-||.+||.
T Consensus 2 ~~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 2 PGPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp -CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 346799999996432 12222221122223456666 8877533221 3444333 333 368999999997
Q ss_pred CC
Q 041791 74 DI 75 (421)
Q Consensus 74 di 75 (421)
.+
T Consensus 82 g~ 83 (167)
T 1uuy_A 82 GF 83 (167)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 104
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=67.51 E-value=3.2 Score=42.15 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=40.5
Q ss_pred CcEEEEEecccc--------CcccchhhhhhHHHHHHHHCCCeEEEEcCC-CChhhhh----hhcCCcCEEEECCCCCC
Q 041791 10 LPRVLIVSRRTV--------RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-TGVHMLL----ESFEPIHGVLLCEGEDI 75 (421)
Q Consensus 10 ~P~igI~~~~~~--------~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-~~~~~l~----~~l~~~DGVIL~GG~di 75 (421)
+|+|+|++..+. ..++..+.-......++.++|+.++.+... ++.+.+. +.++.+|-||.+||.++
T Consensus 181 ~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~ 259 (419)
T 2fts_A 181 FPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSM 259 (419)
T ss_dssp CCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSS
T ss_pred CCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCcC
Confidence 689999996541 133444433333455778899987644322 3344433 34456899999999754
No 105
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=67.00 E-value=28 Score=31.09 Aligned_cols=61 Identities=5% Similarity=-0.121 Sum_probs=39.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh---hh--cCCcCEEEECCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL---ES--FEPIHGVLLCEGE 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~--l~~~DGVIL~GG~ 73 (421)
.+|||+.... .+.+..-+-....+.+.+.|..+++.....+.+... +. -.++||||+.+..
T Consensus 3 ~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDL--ENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCT--TCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCC--cChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 4688887542 344555555666778889999998887655433211 11 1379999998753
No 106
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=66.61 E-value=24 Score=32.19 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh---hhc--CCcCEEEECCCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL---ESF--EPIHGVLLCEGE 73 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGVIL~GG~ 73 (421)
...+|||+.... .+.|..-+-....+.+.+.|...++.....+.+... +.+ ..+||||+.+..
T Consensus 7 ~~~~Igvv~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 7 RSNVVGLIVSDI--ENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCcEEEEEECCC--cchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 346788887542 345555555666778889999988887655443221 111 479999998764
No 107
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=66.19 E-value=35 Score=30.96 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=37.8
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhh-cCCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLES-FEPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-l~~~DGVIL~GG 72 (421)
.+|||+.... .+.+..-+-....+++.+.|...++.....+.+. +... -.++||||+.+.
T Consensus 3 ~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVISTL--NNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESCS--SSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4788887532 2455555556667788889998887765444322 1111 147999999864
No 108
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=65.60 E-value=16 Score=32.72 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=37.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC--CChhh----hhhhc-CC-cCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV--TGVHM----LLESF-EP-IHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~----l~~~l-~~-~DGVIL~GG 72 (421)
|+|||+.... .+.+..-+-....+.+.+.|..+++.... .+.+. +...+ .+ +||||+.+.
T Consensus 1 ~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKGD--SNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSCS--SSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5788887542 34455555566677888899988877632 33322 11111 26 999999875
No 109
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.38 E-value=42 Score=31.43 Aligned_cols=63 Identities=5% Similarity=-0.034 Sum_probs=41.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh---hhc--CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL---ESF--EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGVIL~GG 72 (421)
...||++.......+.|..-+-....+.+.+.|...++.....+.+... +.+ ..+||||+.+.
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3678888754323455656666667788889999988877554433221 111 37999999875
No 110
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=63.89 E-value=29 Score=32.14 Aligned_cols=61 Identities=8% Similarity=-0.078 Sum_probs=40.4
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
+.+|||+.... .+.|..-+....-+++.+.|..+++.....+.+...+.+ .++||||+.+.
T Consensus 3 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTK--SSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCS--SSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCC--cchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46888887643 245555566677788899999888776554443222111 37999999865
No 111
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=63.74 E-value=33 Score=31.63 Aligned_cols=61 Identities=5% Similarity=-0.072 Sum_probs=38.7
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh-----cCCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES-----FEPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~-----l~~~DGVIL~GG 72 (421)
+.+|||+.... .+.|..-+-....+++.+.|..+++.....+.+...+. -.++||||+.+.
T Consensus 2 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 2 EVKIGMAIDDL--RLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp -CEEEEEESCC--SSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CcEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35788887542 24444555566677888999988877665444322111 137999999875
No 112
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=63.07 E-value=34 Score=31.90 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=36.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHC-CCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY-GAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
..+|||+... .+.+...+-....+.+.+. |..+++.....+.+. +...+ .++||||+.+.
T Consensus 6 ~~~Igvi~~~---~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 6 HFRIGVAQCS---DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp CCEEEEEESC---CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEEecC---CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4678888754 4445444445555666677 888777665444322 11111 47999999865
No 113
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=62.67 E-value=39 Score=30.49 Aligned_cols=63 Identities=5% Similarity=-0.025 Sum_probs=37.5
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
..+||++...+...+.+..-+-....+++.+.|...++.....+.+. +...+ .++||||+.+.
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 35788887542123445555555666778889998887765444322 11111 47999999865
No 114
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=60.91 E-value=43 Score=30.57 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=38.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh---hhh-c-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML---LES-F-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l---~~~-l-~~~DGVIL~GG 72 (421)
...|||+... ..+.|..-+-....+.+.+.|...++.....+.+.. .+. . ..+||||+.+.
T Consensus 16 s~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 16 TTTVGVIIPD--ISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CCEEEEEESC--TTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEeCC--CCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 3578888753 234455555556667788899988777654443221 111 1 47999999875
No 115
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=58.98 E-value=37 Score=30.57 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=37.6
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
+++||++... ..+.|...+-...-+.+.+.|..+++.....+.+. +...+ ..+||||+.+.
T Consensus 1 ~~~Igvi~~~--~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 1 KDTIALVVST--LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CCEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred CcEEEEEecC--CCCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578888743 23455555666666778889988877654433322 12222 36999999754
No 116
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=58.45 E-value=43 Score=30.75 Aligned_cols=61 Identities=11% Similarity=-0.060 Sum_probs=38.8
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEGE 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG~ 73 (421)
.+|||+.... .+.|..-+-....+.+.+.|..+++.....+.+. +.+.+ ..+||||+.+..
T Consensus 16 ~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 16 GTIGLIVPDV--NNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp -CEEEEESCT--TSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred CEEEEEeCCC--cChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5688877532 3445555556667788899999888776544322 12221 379999998763
No 117
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=58.37 E-value=56 Score=29.63 Aligned_cols=62 Identities=8% Similarity=-0.129 Sum_probs=37.3
Q ss_pred cEEEEEecc-c-cCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChh----hhhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRR-T-VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVH----MLLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~-~-~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~----~l~~~l-~~~DGVIL~GG 72 (421)
.+||++... . ...+.+..-+-....+.+.+.|..+++.....+.+ .+.... ..+||||+.+.
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 478888743 2 01455555555666778888999877665333221 122221 37999999875
No 118
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=58.36 E-value=40 Score=30.69 Aligned_cols=61 Identities=7% Similarity=-0.057 Sum_probs=38.0
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh------hhhhc--CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM------LLESF--EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~------l~~~l--~~~DGVIL~GG 72 (421)
..+||++.... .+.|..-+-....+.+.+.|..+++.....+.+. +.+.+ .++||||+.+.
T Consensus 8 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 8 LGIIGLFVPTF--FGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp CCEEEEECSCS--CSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEeCCC--CCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 35788887432 3445555555666778889998877665433221 22221 37999999875
No 119
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=58.00 E-value=32 Score=31.70 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=38.9
Q ss_pred CcEEEEEecccc---CcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTV---RKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~---~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG 72 (421)
..+|||+..... ..+.|..-+-....+.+.+.|...++.....+.+. +.+.+ ..+||||+.+.
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 92 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYS 92 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSC
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 467888875421 23455555556666778889998877664433221 11221 37999999875
No 120
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=57.23 E-value=63 Score=29.46 Aligned_cols=64 Identities=8% Similarity=0.047 Sum_probs=39.6
Q ss_pred CcEEEEEeccc--cCcccchhhhhhHHHHHHHHCCCeEEEEcCCC--Chhhhhhhc--CCcCEEEECCCC
Q 041791 10 LPRVLIVSRRT--VRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT--GVHMLLESF--EPIHGVLLCEGE 73 (421)
Q Consensus 10 ~P~igI~~~~~--~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~~l--~~~DGVIL~GG~ 73 (421)
..+|||+.... ...+.|..-+-....+.+.+.|..+++..... ....+.+.+ ..+||||+.+..
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence 35788887532 22445555555666778888999888776432 112222332 379999998763
No 121
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=56.76 E-value=60 Score=30.39 Aligned_cols=60 Identities=15% Similarity=-0.015 Sum_probs=37.8
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh----c-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES----F-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~----l-~~~DGVIL~GG 72 (421)
..||++.... .+.+..-+-....+.+.+.|...++.....+.+...+. + ..+||||+.+.
T Consensus 63 ~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 63 RTVLVLIPSL--ANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp CEEEEEESCS--TTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 5688876532 24444445556667888899988877655444322221 1 37999999874
No 122
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=55.50 E-value=31 Score=32.32 Aligned_cols=63 Identities=8% Similarity=-0.069 Sum_probs=38.9
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CC--cCEEEECCC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EP--IHGVLLCEG 72 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~--~DGVIL~GG 72 (421)
....+|||+.... .+.+..-+-....+.+.+.|...++.....+.+. +...+ .+ +||||+.+.
T Consensus 3 ~~s~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 3 LGQTTLACSFRSL--TNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCCEEEEEESCT--TSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CCccEEEEEecCC--CcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 3446788887532 3445555555666778889998887765444322 11111 36 999999865
No 123
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=54.55 E-value=54 Score=30.09 Aligned_cols=60 Identities=5% Similarity=-0.072 Sum_probs=36.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
.+||++.... .+.+..-+.....+.+.+.|..+++.....+.+. +...+ .++||||+.+.
T Consensus 3 ~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 3 LTVGFSQVGS--ESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp CEEEEEECCC--CSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred eEEEEEeCCC--CCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4788887652 2334444444556677888998877765444322 11111 37999999865
No 124
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=54.32 E-value=67 Score=29.09 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=38.3
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh---hhh-c-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML---LES-F-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l---~~~-l-~~~DGVIL~GG 72 (421)
..+||++.... .+.|..-+-....+.+.+.|...++.....+.+.. .+. . .++||||+.+.
T Consensus 8 ~~~Igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 8 TGMLLVMVSNI--ANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCEEEEEeCCC--CCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 35788887532 34455555556667788899988877654443221 111 1 47999999865
No 125
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=54.21 E-value=25 Score=31.91 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=37.4
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcC--CCChhh----hhhhc-CCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPR--VTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~--~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
...+|||+.......+.+..-+-....+.+.+.|..++++.. ..+.+. +...+ .++||||+.+.
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 74 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAA 74 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 346788887542212445554555566777888988877654 233221 11111 47999999875
No 126
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=54.02 E-value=50 Score=31.22 Aligned_cols=60 Identities=8% Similarity=-0.072 Sum_probs=37.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
.+||++.... .+.+..-+-....+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 71 ~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 135 (355)
T 3e3m_A 71 GFVGLLLPSL--NNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYD 135 (355)
T ss_dssp CEEEEEESCS--BCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred CEEEEEeCCC--CchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5688876432 244444455566678888999988776554443222211 37999999865
No 127
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=53.39 E-value=27 Score=31.51 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=37.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhh---hhc--CCcCEEEECC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLL---ESF--EPIHGVLLCE 71 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~---~~l--~~~DGVIL~G 71 (421)
.+|||+.... .+.+..-+-....+.+.+.|..+++.....+.+... +.+ ..+||||+.+
T Consensus 9 ~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 9 KLIGLLLPDM--SNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp -CEEEEESCT--TSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CEEEEEECCC--CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 5688877532 344555555666778888999988877655533211 211 4799999986
No 128
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=53.14 E-value=73 Score=29.67 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=37.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG 72 (421)
.+||++... ..+.|..-+-....+.+.+.|...++.....+.+. +.+.+ ..+||||+.+.
T Consensus 64 ~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 64 TTVGVILPT--ITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CEEEEEESC--TTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CEEEEEeCC--CCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 578888743 23445454555566778889998887765444322 11111 47999999875
No 129
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=52.88 E-value=12 Score=37.34 Aligned_cols=33 Identities=6% Similarity=-0.026 Sum_probs=20.4
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEE
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVI 47 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vi 47 (421)
.|+|+..+... . ........++||.+.|..+++
T Consensus 40 ~I~iv~K~~~~--~-~~~~~~~l~~~L~~~~~~V~v 72 (365)
T 3pfn_A 40 SVLVIKKMRDA--S-LLQPFKELCTHLMEENMIVYV 72 (365)
T ss_dssp EEEEEECTTCG--G-GHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEecCCCH--H-HHHHHHHHHHHHHHCCCEEEE
Confidence 58999876432 1 122334567888888876554
No 130
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=52.79 E-value=20 Score=34.06 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCCCCcCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC--------------------------Ch
Q 041791 1 MGSSDLSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT--------------------------GV 54 (421)
Q Consensus 1 ~~~~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--------------------------~~ 54 (421)
|..+..+|.+.+|+|+... .+++...++.|.+.|..++.+-+.. +.
T Consensus 1 M~~s~~~M~~~~IlVtGat--------G~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~ 72 (346)
T 3i6i_A 1 MTVSPVPSPKGRVLIAGAT--------GFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQ 72 (346)
T ss_dssp ----------CCEEEECTT--------SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCH
T ss_pred CCCCCCCCCCCeEEEECCC--------cHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCH
Confidence 4444445556688888765 3466666777777776665554322 34
Q ss_pred hhhhhhcC--CcCEEEECCCC
Q 041791 55 HMLLESFE--PIHGVLLCEGE 73 (421)
Q Consensus 55 ~~l~~~l~--~~DGVIL~GG~ 73 (421)
+.+.+.++ ++|.||.+.|.
T Consensus 73 ~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 73 EAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp HHHHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHhhCCCCEEEECCch
Confidence 45566677 88999888774
No 131
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=52.40 E-value=62 Score=29.41 Aligned_cols=60 Identities=5% Similarity=-0.032 Sum_probs=36.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCC-eEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA-VPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
.+|||+.... .+.+...+-....+.+.+.|. ..++.....+.+. +...+ ..+||||+.+.
T Consensus 3 ~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKY--DDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESCT--TSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEeccC--CcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4688887532 344555555666678888997 7766654434322 11111 47999999864
No 132
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=52.05 E-value=11 Score=35.53 Aligned_cols=43 Identities=16% Similarity=0.042 Sum_probs=27.4
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG 72 (421)
+|+|+.++.. + ..-+.+...+++++.|..+. .+.+|-||..||
T Consensus 2 ki~ii~n~~~---~-~~~~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGG 44 (272)
T 2i2c_A 2 KYMITSKGDE---K-SDLLRLNMIAGFGEYDMEYD--------------DVEPEIVISIGG 44 (272)
T ss_dssp EEEEEECCSH---H-HHHHHHHHHHHHTTSSCEEC--------------SSSCSEEEEEES
T ss_pred EEEEEECCCH---H-HHHHHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcC
Confidence 5788888522 1 11233445677888887641 136899999999
No 133
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=51.73 E-value=40 Score=30.76 Aligned_cols=59 Identities=7% Similarity=0.111 Sum_probs=37.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
.+||++.... .+.|...+.....+++.+.|..++++... +.+...+.+ .++||||+.+.
T Consensus 3 ~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 3 LKLGFLVKQP--EEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp EEEEEEESCT--TSHHHHHHHHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEEEeCCC--CchHHHHHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788887532 35555666666777888889888776553 433222111 37999999875
No 134
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=51.05 E-value=81 Score=28.46 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=36.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
.+|||+... ..+.|...+-....+.+.+.|..+++.....+.+. +...+ ..+||||+.+.
T Consensus 2 ~~Igvi~~~--~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVIST--LNNPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecC--CCCHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 367877643 23455555555666778888998877654434322 11111 36999999754
No 135
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=50.98 E-value=69 Score=29.04 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=38.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
..+||++... ..+.|..-+-....+.+.+.|...++.....+.+. +.... ..+||||+.+.
T Consensus 20 ~~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 20 TRSIGLVIPD--LENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp CCEEEEEESC--SCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CcEEEEEeCC--CcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578888743 23445555555666778889998887665444322 11111 47999999875
No 136
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=50.65 E-value=41 Score=30.71 Aligned_cols=60 Identities=3% Similarity=-0.021 Sum_probs=36.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE-cCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV-PRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
.+|+++.... .+.+..-+-....+.+.+.|..++++ ....+.+...+.+ .++||||+.+.
T Consensus 5 ~~I~~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 5 ETYMMITFQS--GMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp CEEEEEESST--TSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred ceEEEEEccC--CChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 4666666442 34455555566677888899988874 4333433222211 37999999875
No 137
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=50.35 E-value=59 Score=30.50 Aligned_cols=61 Identities=11% Similarity=-0.075 Sum_probs=38.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhh----c-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLES----F-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~----l-~~~DGVIL~GG 72 (421)
..+||++.... .+.|..-+-....+.+.+.|..+++.....+.+...+. + ..+||||+.+.
T Consensus 68 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 68 VNLVAVIIPSL--SNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGL 133 (344)
T ss_dssp CSEEEEEESCS--SSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEeCCC--CcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECC
Confidence 35788887432 34455555556667788889988877655444322221 1 36999999864
No 138
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=49.94 E-value=41 Score=30.54 Aligned_cols=62 Identities=6% Similarity=-0.081 Sum_probs=39.3
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC--Chhhhhhhc-----CCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT--GVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~--~~~~l~~~l-----~~~DGVIL~GG 72 (421)
...+|||+.... .+.+..-+-....+++.+.|...+++.... +.+...+.+ .++||||+.+.
T Consensus 4 ~~~~Igvi~~~~--~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 72 (304)
T 3o1i_D 4 SDEKICAIYPHL--KDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTV 72 (304)
T ss_dssp -CCEEEEEESCS--CSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CCcEEEEEeCCC--CCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 346788887542 345555565666778888999988877654 432211111 37999999965
No 139
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=49.67 E-value=37 Score=30.42 Aligned_cols=60 Identities=10% Similarity=-0.050 Sum_probs=37.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhh-cCCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLES-FEPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~-l~~~DGVIL~GG 72 (421)
.+||++.... .+.+..-+-....+.+.+.|...++.....+.+. +... -..+||||+.+.
T Consensus 4 ~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 68 (275)
T 3d8u_A 4 YSIALIIPSL--FEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGS 68 (275)
T ss_dssp CEEEEEESCS--SCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESS
T ss_pred eEEEEEeCCC--ccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4788887432 3445455555666778889998877665444322 1111 147999999865
No 140
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=48.80 E-value=11 Score=42.59 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=34.0
Q ss_pred cccccchHHH----HHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhc
Q 041791 344 ANTALSLQQE----NRLKQMGATVRNASTYIERLKMNEERERVARNIIGKM 390 (421)
Q Consensus 344 ~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (421)
++|+|++..+ ..|+++|+.+ .|+..+.+...+||..+ |.+|.+.
T Consensus 92 ~~~~l~~~~~l~~~~~le~~gv~~--~G~~~~ai~~~~DK~~~-k~~l~~~ 139 (1073)
T 1a9x_A 92 GQTALNCALELERQGVLEEFGVTM--IGATADAIDKAEDRRRF-DVAMKKI 139 (1073)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTCEE--CSSCHHHHHHHHSHHHH-HHHHHHT
T ss_pred CchHHHHHHHHHHhhHHHHcCCee--eCCCHHHHHHhhCHHHH-HHHHHHC
Confidence 4566766543 3789999999 89999999999999887 4556654
No 141
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=48.27 E-value=35 Score=33.37 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=44.4
Q ss_pred chhhhccccccchHHH-HHHhhc-CceecccchhHHHHHhhHHHHHHHHHHHhhcChHHHh------hHHHHHHHHHHH
Q 041791 338 GAEFLEANTALSLQQE-NRLKQM-GATVRNASTYIERLKMNEERERVARNIIGKMSVGQLS------DLISFYHMMGQI 408 (421)
Q Consensus 338 ~~~~~~~~~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 408 (421)
+-+.+.....+|...- .+||+. |.+. ..|+..+++.+-++++.. ..+|+.+++ +...|++...+.
T Consensus 323 ~~~~~a~~~~~s~~~l~r~f~~~~g~s~---~~~~~~~r~~~a~~~L~~---~~~~i~~ia~~~Gf~~~~~f~~~Fk~~ 395 (412)
T 4fe7_A 323 KVDQVLDAVGISRSNLEKRFKEEVGETI---HAMIHAEKLEKARSLLIS---TTLSINEISQMCGYPSLQYFYSVFKKA 395 (412)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHH---CCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcCH---HHHHHHHHHHHHHHHHhc---CCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4444444455565555 557777 9888 899999998887777643 578999985 455666665543
No 142
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=48.03 E-value=88 Score=28.71 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=35.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEc-CCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVP-RVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp-~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
.+||++.... .+ +...+.....+++.+.|..++++. ...+.+. +...+ .++||||+.+.
T Consensus 2 ~~Ig~i~~~~--~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 2 LTIGVIGKSV--HP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp CEEEEECSCS--SH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCC--cH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4788887542 23 555555666677888898877653 2233322 11111 47999999865
No 143
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=47.19 E-value=34 Score=31.76 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=40.5
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC------------hhhhhhhcCCcCEEEEC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG------------VHMLLESFEPIHGVLLC 70 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~------------~~~l~~~l~~~DGVIL~ 70 (421)
+.+++|+|+... .+++..+..+.+..++.+...|+.+.++....- ...+.+.+..+|||||.
T Consensus 32 ~~~mkIliI~GS-~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 32 THRPRILILYGS-LRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp CSCCEEEEEECC-CCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCeEEEEEcc-CCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEE
Confidence 344567776643 334555667777888888889998777653221 23445566679999986
No 144
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=44.67 E-value=32 Score=31.20 Aligned_cols=62 Identities=5% Similarity=-0.078 Sum_probs=37.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC---hhhhhhhc--CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG---VHMLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~---~~~l~~~l--~~~DGVIL~GG 72 (421)
..+|||+.... ..+.+..-+-....+.+.+.|..++++....+ ...+.+.+ ..+||||+.+.
T Consensus 11 ~~~Igvi~~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 11 KPTIALYWSSD-ISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp CCEEEEEEETT-SCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CceEEEEeccc-cchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 36788887532 23445555556667788889988766543222 11222222 26999999865
No 145
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=44.56 E-value=68 Score=30.30 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=36.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG 72 (421)
.+||++.... .+.|..-+-....+.+.+.|...++.....+.+. +.+.+ ..+||||+.+.
T Consensus 67 ~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 67 NTIGVIVPSL--INHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp -CEEEEESCS--SSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CEEEEEeCCC--CCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4678776432 3445555555666778889998887765444322 11211 47999999865
No 146
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=43.30 E-value=51 Score=30.04 Aligned_cols=60 Identities=10% Similarity=-0.028 Sum_probs=38.4
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChh---hhhhhc-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVH---MLLESF-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~l-~~~DGVIL~GG 72 (421)
..+|||+. . ..+.|..-+-....+.+.+.|..+++.....+.+ .+...+ ..+||||+.+.
T Consensus 12 ~~~Igvi~-~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (289)
T 3k9c_A 12 SRLLGVVF-E--LQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGT 75 (289)
T ss_dssp -CEEEEEE-E--TTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETC
T ss_pred CCEEEEEE-e--cCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence 36789888 2 2455555566667788889999888776443321 121222 37999999875
No 147
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=43.29 E-value=52 Score=29.89 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=34.9
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE-cCCCChh----hhhhhc-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV-PRVTGVH----MLLESF-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~----~l~~~l-~~~DGVIL~GG 72 (421)
..+||++... ..+.+..-+-....+.+.+.|...++. ....+.+ .+.... ..+||||+.+.
T Consensus 8 ~~~Ig~i~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 74 (290)
T 3clk_A 8 SNVIAAVVSS--VRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSI 74 (290)
T ss_dssp CCEEEEECCC--CSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESC
T ss_pred CCEEEEEeCC--CCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 3578888753 234455555556667788899988776 4322221 122221 47999999765
No 148
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=42.94 E-value=85 Score=28.17 Aligned_cols=61 Identities=7% Similarity=0.014 Sum_probs=36.9
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh----hhhc-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML----LESF-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGVIL~GG 72 (421)
..+||++.... .+.+..-+-....+.+.+.|...++.....+.+.. .... .++||||+.+.
T Consensus 7 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 7 TKSIGLLATSS--EAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp -CEEEEEESCT--TSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEec
Confidence 35788887532 34444445555566778889988776654443321 1111 47999999765
No 149
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=42.17 E-value=1.6e+02 Score=25.42 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=40.8
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC------------------CChhhhhhhcCCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV------------------TGVHMLLESFEPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~------------------~~~~~l~~~l~~~DGVIL~GG 72 (421)
.+|+|+... .+++...++.|.+.|..++.+-+. .+.+.+.+.++++|.||.+-|
T Consensus 5 ~~ilItGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 5 KKIVLIGAS--------GFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CEEEEETCC--------HHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCC--------chHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 578887655 568888899999999887766543 134456667788999999977
Q ss_pred C
Q 041791 73 E 73 (421)
Q Consensus 73 ~ 73 (421)
.
T Consensus 77 ~ 77 (227)
T 3dhn_A 77 P 77 (227)
T ss_dssp C
T ss_pred C
Confidence 5
No 150
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=41.53 E-value=83 Score=29.69 Aligned_cols=62 Identities=8% Similarity=0.049 Sum_probs=38.4
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC--hhhh-hhhcCCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG--VHML-LESFEPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~~l-~~~l~~~DGVIL~GG 72 (421)
+.+++|+.+|..-+++..... ....+++..+|..+.+...... ..++ .+..+.+|.||..||
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GG 72 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGG 72 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEEC
T ss_pred CCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEcc
Confidence 357888889876554433333 3456778888987766643322 1122 222357899999999
No 151
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=40.97 E-value=23 Score=33.47 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCE 71 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~G 71 (421)
+-+++|+||.... .......+.++|+..|..+..++...-..+ .+.|+.+|.||++.
T Consensus 2 ~~m~~vLiV~g~~------~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~-~~~L~~yDvIIl~d 58 (259)
T 3rht_A 2 NAMTRVLYCGDTS------LETAAGYLAGLMTSWQWEFDYIPSHVGLDV-GELLAKQDLVILSD 58 (259)
T ss_dssp ----CEEEEESSC------TTTTHHHHHHHHHHTTCCCEEECTTSCBCS-SHHHHTCSEEEEES
T ss_pred CCCceEEEECCCC------chhHHHHHHHHHHhCCceEEEecccccccC-hhHHhcCCEEEEcC
Confidence 3457899995221 122334456789999998888875432221 23456899999974
No 152
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=40.80 E-value=52 Score=30.63 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=33.6
Q ss_pred CCcEEEEEeccc-cCcccc-----hhhhhhHHHHHHHHCCCeEEEEcCCCChhhh-hhhcCCcCEEEEC
Q 041791 9 ILPRVLIVSRRT-VRKNKF-----VDFVGEYHLDLIVSYGAVPVIVPRVTGVHML-LESFEPIHGVLLC 70 (421)
Q Consensus 9 ~~P~igI~~~~~-~~~~~~-----~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l-~~~l~~~DGVIL~ 70 (421)
..++|+|.+-.. ...+.. -.-+.....+.|...|..+..+..+.....+ .+.|+++|.||+-
T Consensus 6 ~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~ 74 (252)
T 1t0b_A 6 TPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWW 74 (252)
T ss_dssp CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEE
T ss_pred CCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEe
Confidence 357999998321 111111 1122334567888899877765422211111 2346789999984
No 153
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.79 E-value=67 Score=29.89 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=36.8
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG 72 (421)
..+||++.... .+.|..-+-....+.+.+.|...++.....+.+. +.+.+ ..+||||+.+.
T Consensus 60 ~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 60 TTTVGVIIPDI--SNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSG 125 (332)
T ss_dssp CCEEEEEEC----CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCS
T ss_pred CCEEEEEeCCC--CCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 35788887532 3445555555566777888998877764433221 12222 36999999875
No 154
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=40.54 E-value=1e+02 Score=27.91 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=36.2
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEc--CCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVP--RVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp--~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
.+|||+... ..+.|..-+-...-+.+.+.|..+++.. ...+.+. +...+ ..+||||+.+.
T Consensus 2 ~~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 2 AEYAVVLKT--LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp CEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred cEEEEEeCC--CCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 367777643 2355555565666677888998877765 3333322 11122 36999999864
No 155
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=40.46 E-value=1.2e+02 Score=27.64 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCCEEEEc
Q 041791 115 RLAKLCLERNIPYLGIC 131 (421)
Q Consensus 115 ~li~~ale~~iPiLGIC 131 (421)
..+++|..-++|+.|+|
T Consensus 129 ~ai~EA~~l~IPvIalv 145 (208)
T 1vi6_A 129 QAVSEATAVGIPVVALC 145 (208)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEe
Confidence 56788889999999999
No 156
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=40.34 E-value=2e+02 Score=26.49 Aligned_cols=61 Identities=5% Similarity=-0.055 Sum_probs=35.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE--cCC--CChhh----hhhhc-CCcCEEEECC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV--PRV--TGVHM----LLESF-EPIHGVLLCE 71 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv--p~~--~~~~~----l~~~l-~~~DGVIL~G 71 (421)
..+||++.... ..+.+..-+-....+.+.+.|..+.++ ... .+.+. +...+ .++||||+++
T Consensus 43 ~~~Igvi~~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~ 112 (342)
T 1jx6_A 43 PIKISVVYPGQ-QVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 112 (342)
T ss_dssp CEEEEEEECCC-SSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ceEEEEEecCC-cccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 36788887431 234555555566667788899876655 232 23221 11111 3799999954
No 157
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=40.26 E-value=11 Score=37.89 Aligned_cols=34 Identities=6% Similarity=-0.053 Sum_probs=19.8
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHC--CCeEEE
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY--GAVPVI 47 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vi 47 (421)
..|+|+.++.. .. ........+++|.+. |..+++
T Consensus 42 k~V~II~n~~~--~~-~~~~~~~l~~~L~~~~~gi~V~v 77 (388)
T 3afo_A 42 QNVYITKKPWT--PS-TREAMVEFITHLHESYPEVNVIV 77 (388)
T ss_dssp CEEEEEECTTC--HH-HHHHHHHHHHHHHHHCTTCEEEC
T ss_pred cEEEEEEeCCC--HH-HHHHHHHHHHHHHHhCCCeEEEE
Confidence 46999998653 11 122334456777777 665543
No 158
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=39.33 E-value=21 Score=40.28 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=33.4
Q ss_pred cccccchHHHHHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhc
Q 041791 344 ANTALSLQQENRLKQMGATVRNASTYIERLKMNEERERVARNIIGKM 390 (421)
Q Consensus 344 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (421)
+++++.+. +.|+++|+.+ .|+-.+.+...+||..+. .++.+.
T Consensus 644 ~~~~~~la--~~Le~~Gi~i--~G~~~~ai~~~~DK~~~~-~ll~~~ 685 (1073)
T 1a9x_A 644 GQTPLKLA--RALEAAGVPV--IGTSPDAIDRAEDRERFQ-HAVERL 685 (1073)
T ss_dssp THHHHTTH--HHHHHTTCCB--CSSCHHHHHHHHSHHHHH-HHHHHH
T ss_pred CchHHHHH--HHHHHCCCCe--eCCCHHHHHHhhCHHHHH-HHHHHc
Confidence 35666554 8899999998 899999999999999985 455654
No 159
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=38.89 E-value=73 Score=30.48 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=35.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC--hhhhh-hh-cCCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG--VHMLL-ES-FEPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~--~~~l~-~~-l~~~DGVIL~GG 72 (421)
.+++|+.++....++ . ....++++.+.|..+.+...... ...+. +. .+.+|.||..||
T Consensus 30 ~~~~vi~Np~sg~~~---~-~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG 91 (332)
T 2bon_A 30 PASLLILNGKSTDNL---P-LREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG 91 (332)
T ss_dssp CCEEEEECSSSTTCH---H-HHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES
T ss_pred ceEEEEECCCCCCCc---h-HHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc
Confidence 568999998764442 1 23457788889987766543321 11111 11 236899999999
No 160
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=37.46 E-value=39 Score=30.90 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=40.3
Q ss_pred cEEEEEe-cccc--CcccchhhhhhHHHHHHHHCCCeEEEEcCC--CChhhhhhhcCCcCEEEEC
Q 041791 11 PRVLIVS-RRTV--RKNKFVDFVGEYHLDLIVSYGAVPVIVPRV--TGVHMLLESFEPIHGVLLC 70 (421)
Q Consensus 11 P~igI~~-~~~~--~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~l~~~DGVIL~ 70 (421)
.+|+|+. .+.. ..+.+...+.+...+.+...|+.+.++... .+.+...+.+..+|+|||.
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ 90 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE
Confidence 4455555 4432 245566677778888888899888766543 3455555667789999986
No 161
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=36.42 E-value=95 Score=29.05 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=35.5
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCC-hhhhhhhcCCcCEEEEC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTG-VHMLLESFEPIHGVLLC 70 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~-~~~l~~~l~~~DGVIL~ 70 (421)
++.+|+|+.-..+......-.-+...++++.+.|..++.+..... ...+.. ..+|.|+..
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~--~~~D~v~~~ 72 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKD--EGFVRAFNA 72 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHH--TTCCEEEEC
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhh--cCCCEEEEc
Confidence 456888888643322121112345677899999999998864322 122221 368988765
No 162
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=35.78 E-value=1.8e+02 Score=26.97 Aligned_cols=61 Identities=7% Similarity=0.014 Sum_probs=38.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhh----hhhc-CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHML----LESF-EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l----~~~l-~~~DGVIL~GG 72 (421)
..+||++.... .+.|..-+-....+.+.+.|...++.....+.+.. .... ..+||||+.+.
T Consensus 58 ~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 58 TKSIGLLATSS--EAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp CSEEEEEESCS--CSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEeCCC--CChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 35788887432 34455555556667788899988776654443321 1111 37999999865
No 163
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=35.70 E-value=1.8e+02 Score=26.20 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=35.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEc-CCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVP-RVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp-~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
.+||++.... .+.+..-+-....+++.+.|...+++. ...+.+. +...+ .++||||+.+.
T Consensus 5 ~~Ig~i~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 5 KTVVNISKVD--GMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp EEEEEECSCS--SCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeccC--CChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5788887432 244555555566677888998776543 3333322 11111 47999999865
No 164
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=35.16 E-value=50 Score=31.40 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=29.0
Q ss_pred CCCCcCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEc
Q 041791 2 GSSDLSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVP 49 (421)
Q Consensus 2 ~~~~~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp 49 (421)
+..++.|..-+|+|+-.-. +.+.+...+.+.+++.+++.|..+.++.
T Consensus 14 ~t~~~~m~~MKiLII~aHP-~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 14 GTENLYFQSMKVLLIYAHP-EPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp --------CCEEEEEECCS-CTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcchhhCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3445666656777776432 2456677788899999999999887764
No 165
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=35.01 E-value=1.5e+02 Score=27.26 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=36.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEE-cCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIV-PRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~viv-p~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
.+||++.... .+.+...+....-+++.+.|..+++. +...+.+. +...+ .++||||+.+.
T Consensus 4 ~~Igvi~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 4 ERIAFIPKLV--GVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CEEEEECSSS--SSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CEEEEEeCCC--CChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788887432 24455555556667788889877765 33333322 12221 47999999754
No 166
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=34.50 E-value=62 Score=30.74 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=40.1
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-C------------hhhhhhhcCCcCEEEEC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-G------------VHMLLESFEPIHGVLLC 70 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-~------------~~~l~~~l~~~DGVIL~ 70 (421)
+++|+|+... .+++.....+.+..++.+...|+.+.++.... . ...+.+.+..+|||||.
T Consensus 58 ~mKILiI~GS-~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 58 PVRILLLYGS-LRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWC 130 (279)
T ss_dssp CCEEEEEESC-CSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEEeC-CCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEE
Confidence 4567776643 34566667788888888998999887765321 1 22344556678999986
No 167
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=34.50 E-value=1.2e+02 Score=27.35 Aligned_cols=63 Identities=8% Similarity=-0.046 Sum_probs=36.5
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHC-CCeEEEEcC---CCChhh----hhhh-cCCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY-GAVPVIVPR---VTGVHM----LLES-FEPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp~---~~~~~~----l~~~-l~~~DGVIL~GG 72 (421)
...+|||+..... .+.|..-+-....+.+.+. |..+.+... ..+.+. +... -.++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~-~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 7 KKYTFACLLPKHL-EGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp CCEEEEEEEECCC-TTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CcceEEEEecCCC-CchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3457887765431 3455555666667778887 776665432 123222 1111 247999999975
No 168
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=34.06 E-value=1.2e+02 Score=26.55 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=35.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCC---eEEEEcCCCChhhh-hhhcCCcCEEEECC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA---VPVIVPRVTGVHML-LESFEPIHGVLLCE 71 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga---~~vivp~~~~~~~l-~~~l~~~DGVIL~G 71 (421)
.+|+|+..+=. ...++-+-+.-++.+.++|+ ..+-||-..+..-. ....+.+|+||-.|
T Consensus 18 ~ri~IV~arfn--~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~~yDavIaLG 80 (160)
T 2c92_A 18 VRLAIVASSWH--GKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALG 80 (160)
T ss_dssp CCEEEEEECSS--HHHHHHHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHTSCSEEEEEE
T ss_pred CEEEEEEEeCc--HHHHHHHHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHhcCCEEEEEe
Confidence 57888875411 12344455667888999997 34456643332222 22345799988776
No 169
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=33.98 E-value=74 Score=27.34 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=35.4
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCCh----------------hhhhhhcCCcCEEEEC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGV----------------HMLLESFEPIHGVLLC 70 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~----------------~~l~~~l~~~DGVIL~ 70 (421)
+..|+|+.-.. ...+..+.+...+.+...|+.+.++...... ....+.+..+|+|||.
T Consensus 5 M~kilii~~S~---~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 78 (200)
T 2a5l_A 5 SPYILVLYYSR---HGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALG 78 (200)
T ss_dssp CCEEEEEECCS---SSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEE
T ss_pred cceEEEEEeCC---CChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEE
Confidence 34566665331 2335667778888888899887766543210 0113345679999985
No 170
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=33.92 E-value=2.9e+02 Score=25.94 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=33.8
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCC-CeEEEEcCC---CChhhhhhhcCCcCEEEECC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYG-AVPVIVPRV---TGVHMLLESFEPIHGVLLCE 71 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a~~vivp~~---~~~~~l~~~l~~~DGVIL~G 71 (421)
+.+|+|++-.. ++-.........+.|++.| ..+.+.... .+.+.+.+.|+++|.||+.-
T Consensus 4 ~~kvLiv~G~~---~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~ 66 (281)
T 4e5v_A 4 PIKTLLITGQN---NHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDY 66 (281)
T ss_dssp CEEEEEEESCC---SSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECC
T ss_pred ceEEEEEcCCC---CCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeC
Confidence 45788886543 2213344455677888888 555444321 11122234578899999754
No 171
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=33.62 E-value=1.3e+02 Score=28.28 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCEEEEc
Q 041791 115 RLAKLCLERNIPYLGIC 131 (421)
Q Consensus 115 ~li~~ale~~iPiLGIC 131 (421)
..+++|..-+||+.|||
T Consensus 165 ~AI~EA~~lgIPvIalv 181 (253)
T 3bch_A 165 QPLTEASYVNLPTIALC 181 (253)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEE
Confidence 56788999999999999
No 172
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=33.41 E-value=54 Score=29.15 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=40.3
Q ss_pred EEEEEe-ccccC--cccchhhhhhHHHHHHHHCCCeEEEEcCC--CChhhhhhhcCCcCEEEEC
Q 041791 12 RVLIVS-RRTVR--KNKFVDFVGEYHLDLIVSYGAVPVIVPRV--TGVHMLLESFEPIHGVLLC 70 (421)
Q Consensus 12 ~igI~~-~~~~~--~~~~~~~v~~~yl~~l~~~Ga~~vivp~~--~~~~~l~~~l~~~DGVIL~ 70 (421)
+|+|+. .|... ++.+...+.+.+++.+.+.|+.+.++... .+.+.+.+.+..+|+|||.
T Consensus 14 ~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 14 NILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp EEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred CEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 455554 44322 45677888888999999999888776543 3455666677789999986
No 173
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=33.16 E-value=92 Score=27.15 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=34.6
Q ss_pred CCCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCe-----EEEEcCCCChhhhhhh---cCCcCEEEECC
Q 041791 8 MILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV-----PVIVPRVTGVHMLLES---FEPIHGVLLCE 71 (421)
Q Consensus 8 ~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-----~vivp~~~~~~~l~~~---l~~~DGVIL~G 71 (421)
+...+|+|+..+=. ...++-+-+.-++.+.++|+. .+-||-..+..-..+. -.++|+||-.|
T Consensus 8 ~~~~ri~IV~arfn--~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG 77 (158)
T 1di0_A 8 KTSFKIAFIQARWH--ADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAA 77 (158)
T ss_dssp -CCEEEEEEEECTT--HHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEE
T ss_pred CCCCEEEEEEEeCc--HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEee
Confidence 33468999885511 122344555667888888853 3345643332222121 14699999887
No 174
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=32.80 E-value=55 Score=29.07 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=37.8
Q ss_pred cCCCCcEEEEEeccccCcccchhhhhhHHHHHHHHCC-CeEEEEcCC-------------------CChhhhhhhcCCcC
Q 041791 6 LSMILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYG-AVPVIVPRV-------------------TGVHMLLESFEPIH 65 (421)
Q Consensus 6 ~~~~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a~~vivp~~-------------------~~~~~l~~~l~~~D 65 (421)
..+.+.+|+|+... .+++...++.|.+.| +.++.+-+. .+.+.+.+.++.+|
T Consensus 19 ~~~~mk~vlVtGat--------G~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D 90 (236)
T 3qvo_A 19 FQGHMKNVLILGAG--------GQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQD 90 (236)
T ss_dssp ---CCEEEEEETTT--------SHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred ecCcccEEEEEeCC--------cHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCC
Confidence 34555677777655 457888888888888 666555332 23455566677888
Q ss_pred EEEECCC
Q 041791 66 GVLLCEG 72 (421)
Q Consensus 66 GVIL~GG 72 (421)
.||.+-|
T Consensus 91 ~vv~~a~ 97 (236)
T 3qvo_A 91 IVYANLT 97 (236)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 8887655
No 175
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=32.68 E-value=24 Score=27.85 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=24.2
Q ss_pred HhhcChHHHhhHHHHHHHHHHHhHHHHH
Q 041791 387 IGKMSVGQLSDLISFYHMMGQICSEALE 414 (421)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (421)
|-+||.++|....+|+++|.+-...+++
T Consensus 58 LF~~sl~eL~~v~~YW~~Mn~y~ksI~~ 85 (90)
T 1gvn_A 58 LFDYSLEELQAVHEYWRSMNRYSKQVLN 85 (90)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 7799999999999999999887666544
No 176
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=32.25 E-value=30 Score=34.98 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHCCC-eEEEEcCCCChhhhhhhcCCcCEEEECCCCCCCC
Q 041791 33 YHLDLIVSYGA-VPVIVPRVTGVHMLLESFEPIHGVLLCEGEDIDP 77 (421)
Q Consensus 33 ~yl~~l~~~Ga-~~vivp~~~~~~~l~~~l~~~DGVIL~GG~didp 77 (421)
..++.+.+.|. .+...+...+.+++.+.+.++|+|++.+...++.
T Consensus 27 ~~~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~ 72 (416)
T 3k5p_A 27 TAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTE 72 (416)
T ss_dssp HHHHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCH
T ss_pred HHHHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCH
Confidence 34566778887 5555554446677777788899988876544443
No 177
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=31.97 E-value=47 Score=29.73 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=32.0
Q ss_pred EEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChh---hhhhhc--CCcCEEEECCC
Q 041791 13 VLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVH---MLLESF--EPIHGVLLCEG 72 (421)
Q Consensus 13 igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~---~l~~~l--~~~DGVIL~GG 72 (421)
|||+... ..+.+..-+-....+.+.+.|...++.....+.+ ...+.+ .++||||+.+.
T Consensus 2 Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 64 (276)
T 2h0a_A 2 VSVLLPF--VATEFYRRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASY 64 (276)
T ss_dssp EEEEECC--SCCHHHHHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESC
T ss_pred EEEEECC--CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecC
Confidence 5666532 2344444455556677788898877765432221 111221 36999999875
No 178
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=30.51 E-value=9.7 Score=25.75 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=12.4
Q ss_pred EEEEchhhHHHHHHhC
Q 041791 127 YLGICRGSQVLNVACG 142 (421)
Q Consensus 127 iLGIClG~QlLava~G 142 (421)
.-|.|+|.|+|..+-|
T Consensus 32 tagacfgaqimvaakg 47 (48)
T 1ehs_A 32 TAGACFGAQIMVAAKG 47 (48)
T ss_dssp SCCTTTTTHHHHTTTT
T ss_pred ccccccchhHhhhccc
Confidence 4578999999976544
No 179
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.73 E-value=1.1e+02 Score=27.59 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCe-EEEEcCCCChhhhh---hhc--CCcCEEEECC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV-PVIVPRVTGVHMLL---ESF--EPIHGVLLCE 71 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-~vivp~~~~~~~l~---~~l--~~~DGVIL~G 71 (421)
...+||++.... .+.+..-+-....+.+.+.|.. .++.....+.+... +.+ ..+||||+.+
T Consensus 9 ~~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDL--NNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEeCCC--CChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 346788887542 2455555666667788899998 77766554433211 111 3799999987
No 180
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.37 E-value=1.6e+02 Score=28.39 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCCEEEEc
Q 041791 115 RLAKLCLERNIPYLGIC 131 (421)
Q Consensus 115 ~li~~ale~~iPiLGIC 131 (421)
..+++|...|||+.|||
T Consensus 132 ~AI~EA~~lgIPvIalv 148 (295)
T 2zkq_b 132 QPLTEASYVNLPTIALC 148 (295)
T ss_dssp HHHHHHHHHTCCEEEEE
T ss_pred hHHHHHHHhCCCEEEEe
Confidence 56788989999999999
No 181
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=28.85 E-value=28 Score=24.87 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=25.0
Q ss_pred HHHHHhhHHHHHHHHHHHhhcChHHHhhHHHHHHHHHHHh
Q 041791 370 IERLKMNEERERVARNIIGKMSVGQLSDLISFYHMMGQIC 409 (421)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (421)
|..=+++++|..---.++....- =.||.+||+|+..|.
T Consensus 11 ikSS~l~~~hK~~ml~LL~dikg--~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 11 IKSSRLEEDRKRYLMTLLDDIKG--ANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHSCSCHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHHHHHccc--cchHHHHHHHHHHHH
Confidence 33345677777655555554433 358999999999885
No 182
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=28.78 E-value=2.1e+02 Score=26.79 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCEEEEc
Q 041791 115 RLAKLCLERNIPYLGIC 131 (421)
Q Consensus 115 ~li~~ale~~iPiLGIC 131 (421)
..++.|..-++|+.|+|
T Consensus 131 ~ai~EA~~l~IP~Ial~ 147 (252)
T 3u5c_A 131 QAIKEASYVNIPVIALT 147 (252)
T ss_dssp HHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 56788888999999999
No 183
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=28.30 E-value=97 Score=28.14 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=38.6
Q ss_pred CcEEEEEeccccCcccchh-hhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhc-----CCcCEEEECCC
Q 041791 10 LPRVLIVSRRTVRKNKFVD-FVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESF-----EPIHGVLLCEG 72 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~-~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l-----~~~DGVIL~GG 72 (421)
..+|||+..... +.+.. -+-....+.+.+.|..+++.....+.+...+.+ ..+||||+.+.
T Consensus 13 s~~Igvi~~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 13 SNTFGIITDYVS--TTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp CCEEEEEESSTT--TCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEEeCCCc--CcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 467888875422 33334 455566778889999988877654433222111 37999999864
No 184
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=28.19 E-value=2.9e+02 Score=23.88 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=34.9
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCC-C-----eEEEEcCCCChhhhhhhc---CCcCEEEECC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYG-A-----VPVIVPRVTGVHMLLESF---EPIHGVLLCE 71 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G-a-----~~vivp~~~~~~~l~~~l---~~~DGVIL~G 71 (421)
-.+|+|+..+= ....++-+-+.-++.+.++| . ..+-||-..+..-..+.+ .++||||-.|
T Consensus 12 ~~ri~IV~arf--n~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG 80 (156)
T 3nq4_A 12 DARVAITIARF--NQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALG 80 (156)
T ss_dssp TCCEEEEEEST--THHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEE
T ss_pred CCEEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEee
Confidence 35788887541 11234445556788899999 4 334567544432222222 4699988776
No 185
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=27.56 E-value=72 Score=28.77 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=38.3
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEGE 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG~ 73 (421)
.+|||+... .+.+..-+-....+++.+.|...++.....+.+. +.+.+ ..+||||+.+..
T Consensus 9 ~~Igvi~~~---~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 9 NIIAFIVPD---QNPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEESS---CCHHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CEEEEEECC---CCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 578888754 4555555555666777888998887765444322 11111 479999998753
No 186
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=26.90 E-value=88 Score=29.02 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=28.9
Q ss_pred hHHHHHHHHCCCeEEEEcCCC----Chhhhhh---hcCCcCEEEECCCCC
Q 041791 32 EYHLDLIVSYGAVPVIVPRVT----GVHMLLE---SFEPIHGVLLCEGED 74 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~----~~~~l~~---~l~~~DGVIL~GG~d 74 (421)
+.+.+.|+++|+.++.+|... +.+.+.+ .++.+|.|||+....
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~na 87 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA 87 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHH
Confidence 456778999999998887531 2222222 236789999997643
No 187
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=26.79 E-value=80 Score=27.56 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=35.7
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC---------------------Ch-hhhhhhcCCcCEEE
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT---------------------GV-HMLLESFEPIHGVL 68 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~---------------------~~-~~l~~~l~~~DGVI 68 (421)
..|+|+.-.. ...+..+.+...+.+.+.|+.+.++.... +. ..+.+.+..+|+||
T Consensus 7 mkilii~~S~---~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 83 (211)
T 1ydg_A 7 VKLAIVFYSS---TGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 83 (211)
T ss_dssp CEEEEEECCS---SSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred CeEEEEEECC---CChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEE
Confidence 3566665322 23356677788888988999877766433 11 22344556799999
Q ss_pred EC
Q 041791 69 LC 70 (421)
Q Consensus 69 L~ 70 (421)
|.
T Consensus 84 ~g 85 (211)
T 1ydg_A 84 FS 85 (211)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 188
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=25.48 E-value=1.7e+02 Score=27.02 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=36.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh----hhhhc-CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM----LLESF-EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~----l~~~l-~~~DGVIL~GG 72 (421)
..||++.......+.|.+-+.+...++..+.|...+++....+.+. +.... ..+||||++|.
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECST
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 4788877422222356666666667788889988777654333221 22121 36999999864
No 189
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=24.94 E-value=3.2e+02 Score=23.30 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHCCCeEEEEcCC-----------------CC-hhhhhhhcCCcCEEEECCCC
Q 041791 28 DFVGEYHLDLIVSYGAVPVIVPRV-----------------TG-VHMLLESFEPIHGVLLCEGE 73 (421)
Q Consensus 28 ~~v~~~yl~~l~~~Ga~~vivp~~-----------------~~-~~~l~~~l~~~DGVIL~GG~ 73 (421)
.+++...++.|.+.|..++.+-+. .+ .+.+.+.++++|.||.+-|.
T Consensus 10 G~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 10 GRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp SHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 457777777777777776655432 23 55677778899999999875
No 190
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=24.71 E-value=2e+02 Score=24.90 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=39.2
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHC--CCeEEEEcCC------------------CChhhhhhhcCCcCEEE
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSY--GAVPVIVPRV------------------TGVHMLLESFEPIHGVL 68 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~--Ga~~vivp~~------------------~~~~~l~~~l~~~DGVI 68 (421)
...+|+|+... .+++...++.+.+. |+.++.+-+. .+.+.+.+.++.+|.||
T Consensus 3 ~~~~ilVtGas--------G~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 74 (253)
T 1xq6_A 3 NLPTVLVTGAS--------GRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALV 74 (253)
T ss_dssp SCCEEEEESTT--------SHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEE
T ss_pred CCCEEEEEcCC--------cHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEE
Confidence 34577777654 46888888888888 6776655432 23455666778899999
Q ss_pred ECCCC
Q 041791 69 LCEGE 73 (421)
Q Consensus 69 L~GG~ 73 (421)
.+-|.
T Consensus 75 ~~a~~ 79 (253)
T 1xq6_A 75 ILTSA 79 (253)
T ss_dssp ECCCC
T ss_pred Eeccc
Confidence 98764
No 191
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=24.64 E-value=1.3e+02 Score=25.61 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=41.6
Q ss_pred hHHHHHHHHCCCeEEEEcCCC--------Chh-----hhhhhcCCcCEEEECCCC-CCCCCCccccccCCChhhHHHHHh
Q 041791 32 EYHLDLIVSYGAVPVIVPRVT--------GVH-----MLLESFEPIHGVLLCEGE-DIDPSLYDAELSGFAPEELEEIRA 97 (421)
Q Consensus 32 ~~yl~~l~~~Ga~~vivp~~~--------~~~-----~l~~~l~~~DGVIL~GG~-didp~~y~~~~~~~~~e~~~~i~~ 97 (421)
..|.++|...|..++..|... +.+ ++.+....+|.++|..|- |+
T Consensus 64 ~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF---------------------- 121 (165)
T 2qip_A 64 RQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDF---------------------- 121 (165)
T ss_dssp HHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGG----------------------
T ss_pred HHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhH----------------------
Confidence 457789999999887666420 111 122234678998888773 21
Q ss_pred hccCccccchhhhHHHHHHHHHHHHc-CCCEEEEch
Q 041791 98 LHASDTAIDKEKDTIELRLAKLCLER-NIPYLGICR 132 (421)
Q Consensus 98 ~~~~~~~~d~~rd~~el~li~~ale~-~iPiLGICl 132 (421)
..+++.+.+. ++.|.|++.
T Consensus 122 ----------------~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 122 ----------------SLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp ----------------HHHHHHHHHHHCCEEEEEEC
T ss_pred ----------------HHHHHHHHHHcCcEEEEEeC
Confidence 2466777786 999999984
No 192
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=23.54 E-value=1.1e+02 Score=26.80 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=37.1
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhh---hhhhc--CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHM---LLESF--EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~---l~~~l--~~~DGVIL~GG 72 (421)
.+|||+.... .+.+..-+-...-+.+.+.|...++.....+.+. +.+.+ ..+||||+.+.
T Consensus 3 ~~Igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRL--DSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCT--TCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCC--CCccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4688887432 2445444555566778889998887765444322 11222 47999999875
No 193
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=23.34 E-value=1.2e+02 Score=25.93 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=23.8
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCC--CeEEEEcC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYG--AVPVIVPR 50 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~G--a~~vivp~ 50 (421)
+|+|+.......+..+..+.+.+++.+.+.| +.+.++..
T Consensus 3 kilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 3 KVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp EEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 4555553222223456677788888888876 77666553
No 194
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=23.20 E-value=1.2e+02 Score=27.28 Aligned_cols=37 Identities=11% Similarity=-0.057 Sum_probs=23.6
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHC-CCeEEEEc
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSY-GAVPVIVP 49 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~-Ga~~vivp 49 (421)
.|+|+... .+++..+..+.+..++.+.+. |+.+.++.
T Consensus 3 kIliI~gS-~r~~s~T~~la~~i~~~l~~~~g~~v~~~d 40 (242)
T 1sqs_A 3 KIFIYAGV-RNHNSKTLEYTKRLSSIISSRNNVDISFRT 40 (242)
T ss_dssp EEEEEECC-CCTTCHHHHHHHHHHHHHHHHSCCEEEEEC
T ss_pred eEEEEECC-CCCCChHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45555432 223445666777788888877 88877664
No 195
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=23.16 E-value=3.7e+02 Score=23.25 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=33.4
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEE--EEcCCCChhhhhh-hc-------CCcCEEEECC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPV--IVPRVTGVHMLLE-SF-------EPIHGVLLCE 71 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~v--ivp~~~~~~~l~~-~l-------~~~DGVIL~G 71 (421)
.+|+|+..+=. ...++-+-+.-++.+.++|.... -||-..+.....+ .. .++||||-.|
T Consensus 13 ~ri~IV~arfn--~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG 81 (157)
T 2i0f_A 13 PHLLIVEARFY--DDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALG 81 (157)
T ss_dssp CEEEEEEECSS--HHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEE
T ss_pred cEEEEEEEeCc--HHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEee
Confidence 68998885511 12344455667888999997443 3443222211111 11 4699988776
No 196
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=23.10 E-value=2.1e+02 Score=26.09 Aligned_cols=55 Identities=18% Similarity=0.430 Sum_probs=40.5
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC---------------ChhhhhhhcCCcCEEEECCCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT---------------GVHMLLESFEPIHGVLLCEGE 73 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~---------------~~~~l~~~l~~~DGVIL~GG~ 73 (421)
++|+|+... .|++...++.|.+.|..++.+-+.. ..+.+.+.++++|.||-+.|.
T Consensus 3 ~~vlVtGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGT--------GFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCC--------cHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 467777655 5688888899999998877664431 134566678899999999875
No 197
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=22.91 E-value=66 Score=26.30 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=12.1
Q ss_pred HHHHHHcCCCEEEEc
Q 041791 117 AKLCLERNIPYLGIC 131 (421)
Q Consensus 117 i~~ale~~iPiLGIC 131 (421)
++.|.+.++|++||=
T Consensus 60 I~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 60 VDLARKSSKPIITVR 74 (111)
T ss_dssp HHHHTTTTCCEEEEC
T ss_pred HHHHHHcCCCEEEEE
Confidence 366778999999983
No 198
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=21.80 E-value=3.8e+02 Score=25.09 Aligned_cols=52 Identities=12% Similarity=0.265 Sum_probs=36.2
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCCChhhhhhhcCCcCEEEECCCC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVTGVHMLLESFEPIHGVLLCEGE 73 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~~~~~l~~~l~~~DGVIL~GG~ 73 (421)
.|.|--+++..+ ..+. .+.+...||.|+... .++++.+.++..|+|+|--|-
T Consensus 17 ~Plvh~iTN~V~-----~n~~----AN~~La~GasP~M~~---~~~e~~e~~~~a~alvIn~G~ 68 (273)
T 3dzv_A 17 APLIQCITNEIT-----CESM----ANALLYIDAKPIMAD---DPREFPQMFQQTSALVLNLGH 68 (273)
T ss_dssp CCEEEEECCTTT-----HHHH----HHHHHHTTCEEECCC---CGGGHHHHHTTCSEEEEECCS
T ss_pred CCEEEEecCcch-----hhhH----HHHHHHcCCchhhcC---CHHHHHHHHHHCCeEEEecCC
Confidence 366666666533 1222 346788999999864 466777788889999998774
No 199
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=21.72 E-value=2.4e+02 Score=24.42 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=31.8
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeE----EEEcCCCChhhhhhh-c--CCcCEEEECCC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVP----VIVPRVTGVHMLLES-F--EPIHGVLLCEG 72 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~----vivp~~~~~~~l~~~-l--~~~DGVIL~GG 72 (421)
.+|+|+..+=.+ +-+-+.-++.|.++|+.. +-||-..+.....+. . .++|+||-.|-
T Consensus 3 ~ri~IV~arfn~-----~~Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~ 66 (156)
T 2b99_A 3 KKVGIVDTTFAR-----VDMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGM 66 (156)
T ss_dssp CEEEEEEESSCS-----SCCHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEEC
T ss_pred cEEEEEEEecch-----HHHHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 578888754222 223356678899999632 234533222211121 1 36999998873
No 200
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.36 E-value=27 Score=30.62 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCCEEEEch
Q 041791 115 RLAKLCLERNIPYLGICR 132 (421)
Q Consensus 115 ~li~~ale~~iPiLGICl 132 (421)
.++...++.+..+.|||.
T Consensus 108 ~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 108 KLVEDALEEGGELMGLCY 125 (157)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHHHHhhcCCCCEEEEEh
Confidence 456666566777999994
No 201
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=21.28 E-value=1.5e+02 Score=25.99 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=33.8
Q ss_pred CcEEEEEeccccCcccchhhhhhHHHHHHHHCCCe-----EEEEcCCCChhhhhhh-c-------CCcCEEEECC
Q 041791 10 LPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV-----PVIVPRVTGVHMLLES-F-------EPIHGVLLCE 71 (421)
Q Consensus 10 ~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-----~vivp~~~~~~~l~~~-l-------~~~DGVIL~G 71 (421)
..+|+|+..+=. ...++-+-+.-++.|.++|+. .+-||-..+.....+. . .++|+||-.|
T Consensus 16 ~~ri~IV~arfn--~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG 88 (168)
T 1ejb_A 16 KIRVGIIHARWN--RVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIG 88 (168)
T ss_dssp TCCEEEEECCTT--HHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred CCEEEEEEEeCc--HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEec
Confidence 367898885511 123444556678889999963 2345533222221121 2 3599988776
No 202
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=21.03 E-value=1.5e+02 Score=27.12 Aligned_cols=61 Identities=10% Similarity=-0.042 Sum_probs=37.3
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCC------eEEEEcCCCChhhhhh---h-c-CCcCEEEECCC
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA------VPVIVPRVTGVHMLLE---S-F-EPIHGVLLCEG 72 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga------~~vivp~~~~~~~l~~---~-l-~~~DGVIL~GG 72 (421)
....|||+. + -.+.+..-+-....+.+.+.|. ..++.....+.+.... . . .++||||++|.
T Consensus 7 ~t~~IGvi~--~-~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 7 KTAKVAVSQ--I-VEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CCEEEEEEE--S-SCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred CCcEEEEEE--e-ccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 447899983 2 3466666676777888999998 3333433333332211 1 1 36999998864
No 203
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=20.76 E-value=2.5e+02 Score=26.57 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=39.9
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCCC-------------------ChhhhhhhcCCcCEEEE
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVT-------------------GVHMLLESFEPIHGVLL 69 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~~-------------------~~~~l~~~l~~~DGVIL 69 (421)
.+.+|+|+... .+++...++.|.+.|..++.+-+.. +.+.+.+.++.+|.||-
T Consensus 28 ~~~~vlVtGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih 99 (379)
T 2c5a_A 28 ENLKISITGAG--------GFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFN 99 (379)
T ss_dssp SCCEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred cCCeEEEECCc--------cHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEE
Confidence 34577777654 5788888999999998877654321 23345566778999999
Q ss_pred CCCC
Q 041791 70 CEGE 73 (421)
Q Consensus 70 ~GG~ 73 (421)
+.|.
T Consensus 100 ~A~~ 103 (379)
T 2c5a_A 100 LAAD 103 (379)
T ss_dssp CCCC
T ss_pred Ccee
Confidence 8774
No 204
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=20.72 E-value=85 Score=27.32 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=35.4
Q ss_pred EEEEEeccccCcccchhhhhhHHHHH-HHHCCCeEEEEcCCC-C-------------hhhhhhhcCCcCEEEECC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDL-IVSYGAVPVIVPRVT-G-------------VHMLLESFEPIHGVLLCE 71 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~-l~~~Ga~~vivp~~~-~-------------~~~l~~~l~~~DGVIL~G 71 (421)
.|+|+... .+++..+..+.+...+. +...|+.+.++.... . ...+.+.+..+|+|||.-
T Consensus 4 kilii~gS-~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~s 77 (197)
T 2vzf_A 4 SIVAISGS-PSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVAT 77 (197)
T ss_dssp EEEEEECC-SSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECC-CCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEe
Confidence 45665532 23344556677777788 888898777665321 1 122234456789999863
No 205
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=20.51 E-value=3.8e+02 Score=23.08 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=34.0
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCe-----EEEEcCCCChhhhhhh-c--CCcCEEEECC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAV-----PVIVPRVTGVHMLLES-F--EPIHGVLLCE 71 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~-----~vivp~~~~~~~l~~~-l--~~~DGVIL~G 71 (421)
.+|+|+..+=. ...++-+-+.-++.+.++|+. .+-||-..+..-..+. . .++|+||-.|
T Consensus 13 ~ri~IV~arfn--~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG 79 (154)
T 1rvv_A 13 LKIGIVVGRFN--DFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLG 79 (154)
T ss_dssp CCEEEEEESTT--HHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEE
T ss_pred CEEEEEEEeCc--HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEee
Confidence 57888875411 122344556678889999963 4456643332222121 1 4699988776
No 206
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=20.42 E-value=3.1e+02 Score=22.82 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=37.9
Q ss_pred cEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC-------------------CChhhhhhhcCCcCEEEECC
Q 041791 11 PRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV-------------------TGVHMLLESFEPIHGVLLCE 71 (421)
Q Consensus 11 P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~-------------------~~~~~l~~~l~~~DGVIL~G 71 (421)
.+|+|+... .+++...++.|.+.|..++.+-+. .+.+.+.+.++.+|.||.+-
T Consensus 4 ~~ilVtGat--------G~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a 75 (206)
T 1hdo_A 4 KKIAIFGAT--------GQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (206)
T ss_dssp CEEEEESTT--------SHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCC--------cHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence 367776554 468888888888888877665432 12345556677899999887
Q ss_pred CC
Q 041791 72 GE 73 (421)
Q Consensus 72 G~ 73 (421)
|.
T Consensus 76 ~~ 77 (206)
T 1hdo_A 76 GT 77 (206)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 207
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=20.41 E-value=68 Score=22.97 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.4
Q ss_pred HHHhhcChHHHhhHHHH
Q 041791 385 NIIGKMSVGQLSDLISF 401 (421)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ 401 (421)
.|..||+..|||||-..
T Consensus 32 ~Lvs~m~RseLSDl~Tl 48 (56)
T 2p63_A 32 RLVANMDRSELSDLGTL 48 (56)
T ss_dssp HHHHHCCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHH
Confidence 47899999999998654
No 208
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=20.37 E-value=1.7e+02 Score=27.12 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=39.6
Q ss_pred CCcEEEEEeccccCcccchhhhhhHHHHHHHHCCCeEEEEcCC------------------------------CChhhhh
Q 041791 9 ILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRV------------------------------TGVHMLL 58 (421)
Q Consensus 9 ~~P~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga~~vivp~~------------------------------~~~~~l~ 58 (421)
...+|+|+... .|++...++.|.+.|..++.+-+. .+.+.+.
T Consensus 24 ~~~~vlVtGat--------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 95 (351)
T 3ruf_A 24 SPKTWLITGVA--------GFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCE 95 (351)
T ss_dssp SCCEEEEETTT--------SHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHH
T ss_pred CCCeEEEECCC--------cHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHH
Confidence 34577777654 568888888888888877665431 2344556
Q ss_pred hhcCCcCEEEECCCC
Q 041791 59 ESFEPIHGVLLCEGE 73 (421)
Q Consensus 59 ~~l~~~DGVIL~GG~ 73 (421)
+.++++|.||-+.|.
T Consensus 96 ~~~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 96 QVMKGVDHVLHQAAL 110 (351)
T ss_dssp HHTTTCSEEEECCCC
T ss_pred HHhcCCCEEEECCcc
Confidence 677789999999874
No 209
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=20.15 E-value=1.1e+02 Score=29.13 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=41.4
Q ss_pred EEEEEeccccCcccchhhhhhHHHHHHHHCCC-eEEEEcCCCChhhhhhhcCCcCEEEECCCC
Q 041791 12 RVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGA-VPVIVPRVTGVHMLLESFEPIHGVLLCEGE 73 (421)
Q Consensus 12 ~igI~~~~~~~~~~~~~~v~~~yl~~l~~~Ga-~~vivp~~~~~~~l~~~l~~~DGVIL~GG~ 73 (421)
+|+|+... .+++...++.|.+.|. .++.+-+..+.+.+.+.++++|.||-+.|.
T Consensus 2 ~VlVtGat--------G~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~ 56 (369)
T 3st7_A 2 NIVITGAK--------GFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV 56 (369)
T ss_dssp EEEEETTT--------SHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred EEEEECCC--------CHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence 45665544 5688888999999998 776665545677888888899999998775
No 210
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=20.14 E-value=49 Score=30.23 Aligned_cols=56 Identities=9% Similarity=0.080 Sum_probs=39.3
Q ss_pred chhhhccccccchHHH-HHHhhcCceecccchhHHHHHhhHHHHHHHHHHHhhcChHHHhhHH
Q 041791 338 GAEFLEANTALSLQQE-NRLKQMGATVRNASTYIERLKMNEERERVARNIIGKMSVGQLSDLI 399 (421)
Q Consensus 338 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (421)
+.+.+.....+|...- ..||+.|.|+ ..|+..+++.+-++.+.. ..+|+.+++.-+
T Consensus 187 sl~~lA~~~~~S~~~l~r~fk~~G~t~---~~~l~~~Rl~~A~~lL~~---~~~si~eIA~~~ 243 (276)
T 3gbg_A 187 RWADICGELRTNRMILKKELESRGVKF---RELINSIRISYSISLMKT---GEFKIKQIAYQS 243 (276)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTTTCCH---HHHHHHHHHHHHHHHHHH---TCCCHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHhC---CCCCHHHHHHHh
Confidence 3333333334455444 4589999998 899999999988887753 478999997544
Done!