BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041794
         (790 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
           Modeling And Nmr Data
          Length = 136

 Score = 34.3 bits (77), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 644 DPSTLDRSDKNILQRDLLSIECAKKLNEALRLHHKRRNCPDPSSLSKSISDMTEE----- 698
           DP+ L+R  +  +Q  ++    + ++ E L LH    NC DP++L++ + D   E     
Sbjct: 37  DPNALNRFGRRPIQVMMMG---SAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDT 93

Query: 699 -VVNHR 703
            VV HR
Sbjct: 94  LVVLHR 99


>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
 pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
          Length = 175

 Score = 29.6 bits (65), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 40  QPGPVTR-----LLSCTDEDMKKYKGMHLAPTMEVPSMSRHPKTGDWYPAINKPAGIVHW 94
           QPG VTR     +L  TDE  +  K +   P  ++     H K  +  P + K A I H+
Sbjct: 80  QPGSVTRCRPVGVLKMTDEAGEDAK-LVAVPHSKLSKEYDHIKDVNDLPELLK-AQIAHF 137

Query: 95  LKHSKDAENVDWVVI 109
            +H KD E   WV +
Sbjct: 138 FEHYKDLEKGKWVKV 152


>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
 pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
 pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
           Pyrophosphatase
 pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
           Pyrophosphatase
 pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
 pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
           Pyrophosphate And Fluoride
 pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
           Pyrophosphatase From Escherichia Coli
          Length = 175

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 40  QPGPVTR-----LLSCTDEDMKKYKGMHLAPTMEVPSMSRHPKTGDWYPAINKPAGIVHW 94
           QPG VTR     +L  TDE  +  K +   P  ++     H K  +  P + K A I H+
Sbjct: 80  QPGSVTRCRPVGVLKMTDEAGEDAK-LVAVPHSKLSKEYDHIKDVNDLPELLK-AQIAHF 137

Query: 95  LKHSKDAENVDWVVI 109
            +H KD E   WV +
Sbjct: 138 FEHYKDLEKGKWVKV 152


>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
           Pyrophosphatase
          Length = 175

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 40  QPGPVTR-----LLSCTDEDMKKYKGMHLAPTMEVPSMSRHPKTGDWYPAINKPAGIVHW 94
           QPG VTR     +L  TDE  +  K +   P  ++     H K  +  P + K A I H+
Sbjct: 80  QPGSVTRCRPVGVLKMTDEAGEDAK-LVAVPHSKLSKEYDHIKDVNDLPELLK-AQIAHF 137

Query: 95  LKHSKDAENVDWVVI 109
            +H KD E   WV +
Sbjct: 138 FEHYKDLEKGKWVKV 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,326,395
Number of Sequences: 62578
Number of extensions: 1172937
Number of successful extensions: 2111
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2111
Number of HSP's gapped (non-prelim): 4
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)