Query 041794
Match_columns 790
No_of_seqs 203 out of 236
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12273 RCR: Chitin synthesis 60.8 5.6 0.00012 38.3 2.1 16 745-760 4-19 (130)
2 PF10617 DUF2474: Protein of u 54.2 16 0.00035 29.3 3.2 20 740-759 9-28 (40)
3 PF12273 RCR: Chitin synthesis 39.8 8 0.00017 37.2 -0.5 27 743-769 5-31 (130)
4 cd00505 Glyco_transf_8 Members 33.0 46 0.001 34.8 3.7 122 12-136 1-128 (246)
5 PF01102 Glycophorin_A: Glycop 32.2 44 0.00095 32.7 3.1 34 734-767 60-93 (122)
6 PF09777 OSTMP1: Osteopetrosis 31.8 1.1E+02 0.0025 32.8 6.4 25 663-687 159-183 (237)
7 cd02537 GT8_Glycogenin Glycoge 26.8 2.3E+02 0.0049 29.8 7.6 101 15-123 4-109 (240)
8 PF14575 EphA2_TM: Ephrin type 26.3 81 0.0018 28.1 3.5 12 742-753 2-13 (75)
9 PF13120 DUF3974: Domain of un 26.3 60 0.0013 30.8 2.8 38 739-776 5-42 (126)
10 PF05637 Glyco_transf_34: gala 26.1 62 0.0013 34.5 3.3 39 82-123 58-96 (239)
11 PF05393 Hum_adeno_E3A: Human 24.8 41 0.00089 31.3 1.4 30 746-775 36-67 (94)
12 PF01501 Glyco_transf_8: Glyco 23.6 50 0.0011 33.2 2.0 117 13-138 1-133 (250)
13 PF13506 Glyco_transf_21: Glyc 22.3 2E+02 0.0044 28.9 6.0 123 87-235 18-154 (175)
14 PF05795 Plasmodium_Vir: Plasm 22.0 79 0.0017 34.1 3.2 18 745-762 286-303 (354)
15 PF11189 DUF2973: Protein of u 21.4 1.5E+02 0.0033 26.0 4.2 19 772-790 36-54 (65)
16 PF01762 Galactosyl_T: Galacto 20.2 1.7E+02 0.0037 29.5 5.0 88 450-538 66-165 (195)
No 1
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=60.83 E-value=5.6 Score=38.29 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=7.8
Q ss_pred HHHHHhhHHHHHHHHh
Q 041794 745 IWAFCGLGFLLVMFVL 760 (790)
Q Consensus 745 ~~~~~~~~~~~~~~~~ 760 (790)
||++.|++||++++++
T Consensus 4 l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLF 19 (130)
T ss_pred eHHHHHHHHHHHHHHH
Confidence 4455555555544443
No 2
>PF10617 DUF2474: Protein of unknown function (DUF2474); InterPro: IPR018895 This family of short proteins has no known function.
Probab=54.21 E-value=16 Score=29.27 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 041794 740 FWVIAIWAFCGLGFLLVMFV 759 (790)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~ 759 (790)
.|++++|+.|+++..+|-+.
T Consensus 9 ~W~v~iW~~SV~aL~~va~~ 28 (40)
T PF10617_consen 9 GWFVLIWAASVLALGVVAML 28 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 69999999999887666544
No 3
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.85 E-value=8 Score=37.23 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=13.8
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCC
Q 041794 743 IAIWAFCGLGFLLVMFVLFSGCKGKGP 769 (790)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (790)
+++.+++++.||++++.+-++|||+|.
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~r~G~ 31 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRRRRGL 31 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 344444555555555556555555543
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=33.01 E-value=46 Score=34.78 Aligned_cols=122 Identities=14% Similarity=0.044 Sum_probs=59.0
Q ss_pred EEEEEeecCCCCcchhhhHHHHHHHHhCCCCCceEEeec--ChhhhhcccCCCCcCceec--CCCCCCCCCCCCcc-ccc
Q 041794 12 IHTLFSVECRNYFDWQTVGLMRSFKKAGQPGPVTRLLSC--TDEDMKKYKGMHLAPTMEV--PSMSRHPKTGDWYP-AIN 86 (790)
Q Consensus 12 ~HtvfSt~cs~Y~~WQsri~y~s~kk~~qpG~fTRILsc--tddel~~~~~mdeiPT~~v--p~~~~~~~~gd~Y~-v~N 86 (790)
||+++.+++..|..--. ++.+|..+....--.-=|++. +++..+.++.+-..+.+.+ -++.........-. -+-
T Consensus 1 ~~i~~~a~d~~y~~~~~-v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (246)
T cd00505 1 IAIVIVATGDEYLRGAI-VLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPI 79 (246)
T ss_pred CeEEEEecCcchhHHHH-HHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCcc
Confidence 68999998889998876 555666665543222334442 4555555543322222110 01110000000000 011
Q ss_pred cchHH-HHHHhcCCCCCCcCEEEEEeCCeEeecCCCCCcCCCCCCceeeee
Q 041794 87 KPAGI-VHWLKHSKDAENVDWVVILDADMIIRGPIIPWELGAEKGRPVAAL 136 (790)
Q Consensus 87 KP~Av-~~WL~~a~~~~~~~~VlmlDpD~I~~rPl~p~~~~a~~G~pvA~~ 136 (790)
.+.+. +=.+-.- .+ .-+=||.||+|+|++++|......--.|.++|+-
T Consensus 80 ~~~~y~RL~i~~l-lp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav 128 (246)
T cd00505 80 KIVTLTKLHLPNL-VP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAA 128 (246)
T ss_pred ccceeHHHHHHHH-hh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEc
Confidence 12221 1111111 12 3578999999999999998642211255666664
No 5
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.21 E-value=44 Score=32.67 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=19.5
Q ss_pred cccchhHHHHHHHHHHhhHHHHHHHHhhhcccCC
Q 041794 734 LFSSLRFWVIAIWAFCGLGFLLVMFVLFSGCKGK 767 (790)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (790)
.|+..-+-.|.++++.|+..+++++.++.+|++|
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666667777777777765555444455554443
No 6
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=31.80 E-value=1.1e+02 Score=32.76 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCc
Q 041794 663 IECAKKLNEALRLHHKRRNCPDPSS 687 (790)
Q Consensus 663 ie~i~~lN~A~~~~h~~~~Cp~~~~ 687 (790)
+.+.++||.-...+.+.-+|..+-.
T Consensus 159 ~DveD~MN~Tr~lWs~~~~C~~~~~ 183 (237)
T PF09777_consen 159 FDVEDAMNRTRHLWSKTFNCSVPCK 183 (237)
T ss_pred hhHHHHHHHHHHHhcccccCCCccc
Confidence 3688899998888888778866544
No 7
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=26.80 E-value=2.3e+02 Score=29.84 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=51.6
Q ss_pred EEeecCCCCcchhhhHHHHHHHHhCCCCCceEEee--c--ChhhhhcccCCCCcCceecCCCCCCCCCCCCccccccchH
Q 041794 15 LFSVECRNYFDWQTVGLMRSFKKAGQPGPVTRLLS--C--TDEDMKKYKGMHLAPTMEVPSMSRHPKTGDWYPAINKPAG 90 (790)
Q Consensus 15 vfSt~cs~Y~~WQsri~y~s~kk~~qpG~fTRILs--c--tddel~~~~~mdeiPT~~vp~~~~~~~~gd~Y~v~NKP~A 90 (790)
|..+....|.. ++.++.+|.++.+.. +..++. . +++.++.++.+. +-...++.+..... .....+.+-
T Consensus 4 ~t~~~~~~Y~~-~a~vl~~SL~~~~~~--~~~~vl~~~~is~~~~~~L~~~~-~~~~~v~~i~~~~~----~~~~~~~~~ 75 (240)
T cd02537 4 VTLLTNDDYLP-GALVLGYSLRKVGSS--YDLVVLVTPGVSEESREALEEVG-WIVREVEPIDPPDS----ANLLKRPRF 75 (240)
T ss_pred EEEecChhHHH-HHHHHHHHHHhcCCC--CCEEEEECCCCCHHHHHHHHHcC-CEEEecCccCCcch----hhhccchHH
Confidence 33333446766 899999999998653 444443 2 344444444332 11122333322110 000111122
Q ss_pred HHHHHhcCCC-CCCcCEEEEEeCCeEeecCCCCC
Q 041794 91 IVHWLKHSKD-AENVDWVVILDADMIIRGPIIPW 123 (790)
Q Consensus 91 v~~WL~~a~~-~~~~~~VlmlDpD~I~~rPl~p~ 123 (790)
...|.+-.-. ...-+-||-||+|+|++++|...
T Consensus 76 ~~~~~kl~~~~l~~~drvlylD~D~~v~~~i~~L 109 (240)
T cd02537 76 KDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDEL 109 (240)
T ss_pred HHHhHHHHhccccccceEEEEeCCeeEccCHHHH
Confidence 2223332111 11357899999999999999864
No 8
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=26.30 E-value=81 Score=28.13 Aligned_cols=12 Identities=25% Similarity=0.044 Sum_probs=4.4
Q ss_pred HHHHHHHHhhHH
Q 041794 742 VIAIWAFCGLGF 753 (790)
Q Consensus 742 ~~~~~~~~~~~~ 753 (790)
+|+.-+++++..
T Consensus 2 ii~~~~~g~~~l 13 (75)
T PF14575_consen 2 IIASIIVGVLLL 13 (75)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEehHHHHHHHH
Confidence 333333333333
No 9
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=26.27 E-value=60 Score=30.76 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCccccc
Q 041794 739 RFWVIAIWAFCGLGFLLVMFVLFSGCKGKGPRSKSYRS 776 (790)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (790)
.+-++.+=+++.+||-+|+++|+-||+.--+-.|-|++
T Consensus 5 ~~vl~l~g~llligftivvl~vyfgrk~ylswakpykr 42 (126)
T PF13120_consen 5 KMVLLLIGTLLLIGFTIVVLLVYFGRKFYLSWAKPYKR 42 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecceeeeeecChhhH
Confidence 44556666788899999999999999987666677754
No 10
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=26.12 E-value=62 Score=34.47 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=25.0
Q ss_pred ccccccchHHHHHHhcCCCCCCcCEEEEEeCCeEeecCCCCC
Q 041794 82 YPAINKPAGIVHWLKHSKDAENVDWVVILDADMIIRGPIIPW 123 (790)
Q Consensus 82 Y~v~NKP~Av~~WL~~a~~~~~~~~VlmlDpD~I~~rPl~p~ 123 (790)
.....|+.++++-|++-. +.+||+-+|+|-||+.|=.++
T Consensus 58 ~~~W~K~~~lr~~m~~~P---~~~wv~~lD~Dali~n~~~~L 96 (239)
T PF05637_consen 58 PGSWAKIPALRAAMKKYP---EAEWVWWLDSDALIMNPDFSL 96 (239)
T ss_dssp HHHHTHHHHHHHHHHH-T---T-SEEEEE-TTEEE-------
T ss_pred ChhhHHHHHHHHHHHhCC---CCCEEEEEcCCeEEEeccccc
Confidence 455789999999998753 468999999999999987663
No 11
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.76 E-value=41 Score=31.32 Aligned_cols=30 Identities=33% Similarity=0.640 Sum_probs=17.4
Q ss_pred HHHHhh-HHHHHHHHhhhccc-CCCCCCcccc
Q 041794 746 WAFCGL-GFLLVMFVLFSGCK-GKGPRSKSYR 775 (790)
Q Consensus 746 ~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 775 (790)
|.++++ -|++++++.|.-++ |+.+|.-+||
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrsRrPIYr 67 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRSRRPIYR 67 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 334443 45777777776664 5556666665
No 12
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=23.63 E-value=50 Score=33.23 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=56.0
Q ss_pred EEEEeecCCCCcchhhhHHHHHHHHhCCC-CCc-eEEee--cChhhhhcccC----CCCc-CceecCCC-------CCCC
Q 041794 13 HTLFSVECRNYFDWQTVGLMRSFKKAGQP-GPV-TRLLS--CTDEDMKKYKG----MHLA-PTMEVPSM-------SRHP 76 (790)
Q Consensus 13 HtvfSt~cs~Y~~WQsri~y~s~kk~~qp-G~f-TRILs--ctddel~~~~~----mdei-PT~~vp~~-------~~~~ 76 (790)
|+++++|.. | -=++.++.+|.++...- ..+ .-|++ .++++++.++. ..++ +....+.. ....
T Consensus 1 ~i~~~~d~~-y-~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
T PF01501_consen 1 HIVLACDDN-Y-LEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPS 78 (250)
T ss_dssp -EEEECSGG-G-HHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HC
T ss_pred CEEEEeCHH-H-HHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhcccc
Confidence 677777554 3 34677888898888653 333 55555 24555544421 2122 22222211 0110
Q ss_pred CCCCCccccccchHHHHHHhcCCCCCCcCEEEEEeCCeEeecCCCCCcCCCCCCceeeeeec
Q 041794 77 KTGDWYPAINKPAGIVHWLKHSKDAENVDWVVILDADMIIRGPIIPWELGAEKGRPVAALYG 138 (790)
Q Consensus 77 ~~gd~Y~v~NKP~Av~~WL~~a~~~~~~~~VlmlDpD~I~~rPl~p~~~~a~~G~pvA~~fg 138 (790)
.....+..+-|=.... -| .+.+-||.||+|+|+++++........+|.++|+.-+
T Consensus 79 ~~~~~~~~~~rl~i~~-ll------~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~ 133 (250)
T PF01501_consen 79 KRHFSPATFARLFIPD-LL------PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVED 133 (250)
T ss_dssp CTCGGGGGGGGGGHHH-HS------TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE-
T ss_pred cccccHHHHHHhhhHH-HH------hhcCeEEEEcCCeeeecChhhhhcccchhhhcccccc
Confidence 1111223333322211 11 1357999999999999999854322234777777544
No 13
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=22.35 E-value=2e+02 Score=28.91 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred cchHHHHHHhc-CCCCCCcCEEEEEeCCeEeec--------CCCCCcCCCCCCceeeeeeccccc-----chhHhhhhcc
Q 041794 87 KPAGIVHWLKH-SKDAENVDWVVILDADMIIRG--------PIIPWELGAEKGRPVAALYGYLIG-----CNNILAKLHT 152 (790)
Q Consensus 87 KP~Av~~WL~~-a~~~~~~~~VlmlDpD~I~~r--------Pl~p~~~~a~~G~pvA~~fgYi~g-----~~n~lak~~~ 152 (790)
|=+.+.+.++. + +.|+|+++|+|...-. |+.....++..+.|...+-.-..+ .-+.+..+..
T Consensus 18 Kv~nL~~~~~~~a----~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (175)
T PF13506_consen 18 KVNNLAQGLEAGA----KYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQ 93 (175)
T ss_pred HHHHHHHHHHhhC----CCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHH
Q ss_pred cCCCccCCCCCceeeeHHHHHhhhhhhhhhhHHHhhccccccccccCCcccchhHHHhhHHHHHHhhcCCCcccCccccc
Q 041794 153 KHPELCDKVGGLLAMHIDDLRALAPLWLSKTEEVREDRAHWATNITGDIYASGWISEMYGYSFGAAEVGLRHKINDDLMI 232 (790)
Q Consensus 153 ~~pe~~d~vG~~~im~~dDL~~iAP~W~~~t~~vr~D~~~~~~~~tgDvy~~gWv~EMYaYs~AAA~~gv~H~l~~~lmi 232 (790)
.......-.|+.+++++++|+++.-. ++| ...++|=|..+-..+..|++..+....+.
T Consensus 94 a~~~~~~~~G~~m~~rr~~L~~~GG~------------~~l----------~~~ladD~~l~~~~~~~G~~v~~~~~~v~ 151 (175)
T PF13506_consen 94 ALGGAPFAWGGSMAFRREALEEIGGF------------EAL----------ADYLADDYALGRRLRARGYRVVLSPYPVV 151 (175)
T ss_pred HhcCCCceecceeeeEHHHHHHcccH------------HHH----------hhhhhHHHHHHHHHHHCCCeEEEcchhee
Q ss_pred cCC
Q 041794 233 YPG 235 (790)
Q Consensus 233 ~Pp 235 (790)
+..
T Consensus 152 ~~~ 154 (175)
T PF13506_consen 152 QTS 154 (175)
T ss_pred ecc
No 14
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=22.03 E-value=79 Score=34.07 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=14.7
Q ss_pred HHHHHhhHHHHHHHHhhh
Q 041794 745 IWAFCGLGFLLVMFVLFS 762 (790)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~ 762 (790)
.=+++++|++++.+++|.
T Consensus 286 ~~~~~~~G~~~~~f~LYK 303 (354)
T PF05795_consen 286 SPVLSVLGIPLIFFLLYK 303 (354)
T ss_pred hhhhhhHHHHHHHHHHhc
Confidence 556788888888888888
No 15
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=21.43 E-value=1.5e+02 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=14.7
Q ss_pred ccccccccccccccccCCC
Q 041794 772 KSYRSKRRSSYSGFLDMNG 790 (790)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~ 790 (790)
...|..+.+.|.-++|.||
T Consensus 36 ~~~~~~~~t~HPELLD~~G 54 (65)
T PF11189_consen 36 YNDRTGKVTIHPELLDENG 54 (65)
T ss_pred chhccCCCCCCcccCCCCc
Confidence 3356666778999999998
No 16
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=20.17 E-value=1.7e+02 Score=29.45 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=47.7
Q ss_pred chHHHHHHHhhcCCCCcEEEEecCceeeeCCCCCcccccCC--CccccccccccccCchhhh----hccc---cCCCCCC
Q 041794 450 KPAAVLHWLNHADTDAEFIVILDADMIMRGPITPWEYKAER--GRPVSTPYDYLIGCNNELA----KLHT---RHPDACD 520 (790)
Q Consensus 450 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~~~~~~a~~--G~pva~~f~Yi~~~~n~l~----k~~~---~~pe~~d 520 (790)
|=-+..+|+.+.-...+||+.+|-|+.+ ++-.-...+... ...-...|+++.......+ |... .+|....
T Consensus 66 K~~~~~~w~~~~c~~~~~v~k~DDD~~v-n~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~y 144 (195)
T PF01762_consen 66 KTLAGLKWASKHCPNAKYVLKVDDDVFV-NPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYY 144 (195)
T ss_pred HHHHHHHHHHhhCCchhheeecCcEEEE-ehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccC
Confidence 3356778887766668999999999854 442211111111 2222333444432222221 1111 1232222
Q ss_pred C---CCCeEEEeHhHHHHHHH
Q 041794 521 K---VGGVIIMHIDDLRKFAM 538 (790)
Q Consensus 521 ~---vG~p~im~~~DL~~iAP 538 (790)
| .|+-|+|+.+-+++|..
T Consensus 145 P~y~~G~~yvls~~~v~~i~~ 165 (195)
T PF01762_consen 145 PPYCSGGGYVLSSDVVKRIYK 165 (195)
T ss_pred CCcCCCCeEEecHHHHHHHHH
Confidence 2 48899999999988886
Done!