Query 041794
Match_columns 790
No_of_seqs 203 out of 236
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 50.8 12 0.00043 38.5 4.4 157 10-175 4-172 (276)
2 2kog_A Vesicle-associated memb 20.1 1.3E+02 0.0045 27.7 5.3 27 664-695 44-70 (119)
3 4ayl_A BOGT-metal-independent 16.3 2.7E+02 0.0091 29.0 7.0 86 103-191 87-182 (246)
4 3ulb_A Target of rapamycin com 12.2 1E+02 0.0035 28.9 2.3 42 465-506 28-69 (121)
5 2l2t_A Receptor tyrosine-prote 10.8 1.7E+02 0.0057 23.0 2.7 7 743-749 12-18 (44)
6 1g9r_A Glycosyl transferase; a 10.6 1E+02 0.0035 31.9 2.0 114 12-135 1-127 (311)
7 2l8s_A Integrin alpha-1; trans 10.5 2.2E+02 0.0074 23.3 3.4 27 733-759 2-28 (54)
8 1o7q_A N-acetyllactosaminide a 10.0 3.2E+02 0.011 29.0 5.5 79 103-191 138-228 (289)
9 2ks1_B Epidermal growth factor 9.7 2E+02 0.0068 22.4 2.8 7 759-765 32-38 (44)
10 3ulb_A Target of rapamycin com 8.7 2.4E+02 0.0082 26.5 3.4 41 104-144 28-68 (121)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=50.79 E-value=12 Score=38.48 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=71.7
Q ss_pred CeEEEEEeecCCCCcchhhhHHHHHHHHhCCCCCce-EEeec--ChhhhhcccCC----C-CcCceecCC--CCCCCCCC
Q 041794 10 YRIHTLFSVECRNYFDWQTVGLMRSFKKAGQPGPVT-RLLSC--TDEDMKKYKGM----H-LAPTMEVPS--MSRHPKTG 79 (790)
Q Consensus 10 ~~~HtvfSt~cs~Y~~WQsri~y~s~kk~~qpG~fT-RILsc--tddel~~~~~m----d-eiPT~~vp~--~~~~~~~g 79 (790)
-.+|++|++|.+ .--++.++.+|..+....-.+. =|++. +++.++.++.+ + ++-.+.+++ +..-+.+
T Consensus 4 m~i~I~~~~d~~--Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~- 80 (276)
T 3tzt_A 4 MADALLLTLDEN--YIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKVT- 80 (276)
T ss_dssp -CEEEEEECCGG--GHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-----------
T ss_pred eeEEEEEEeCHh--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCccc-
Confidence 369999999776 3456888899998887633332 25663 45554444321 1 122222222 1111111
Q ss_pred CCccccccchHHHHH-HhcCCCCCCcCEEEEEeCCeEeecCCCCCcCCCCCCceeeeeeccccc-chhHhhhhcccCCCc
Q 041794 80 DWYPAINKPAGIVHW-LKHSKDAENVDWVVILDADMIIRGPIIPWELGAEKGRPVAALYGYLIG-CNNILAKLHTKHPEL 157 (790)
Q Consensus 80 d~Y~v~NKP~Av~~W-L~~a~~~~~~~~VlmlDpD~I~~rPl~p~~~~a~~G~pvA~~fgYi~g-~~n~lak~~~~~pe~ 157 (790)
..|+ +.++... +-.- .+.+-+-||-||+|+|+++++......--.|.++|+--....+ ..+...+..-..++
T Consensus 81 ~~~s----~~~~~rl~~~~l-~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~- 154 (276)
T 3tzt_A 81 DRYP----KEMYYRLLAGEF-LPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDT- 154 (276)
T ss_dssp ---C----HHHHHHHTHHHH-SCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------
T ss_pred cccC----HHHHHHHHHHHH-cccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCC-
Confidence 1111 2222222 2211 1223579999999999999998532111246666664332211 11111111111111
Q ss_pred cCCCCCceeeeHHHHHhh
Q 041794 158 CDKVGGLLAMHIDDLRAL 175 (790)
Q Consensus 158 ~d~vG~~~im~~dDL~~i 175 (790)
+.--.|.++|+.+-+|+.
T Consensus 155 ~yfNsGV~linl~~~R~~ 172 (276)
T 3tzt_A 155 DYYNSGLLLINLKRAREE 172 (276)
T ss_dssp -CEEEEEEEEEHHHHHHH
T ss_pred CeEEeeEEEEEHHHHHhh
Confidence 222245688888887763
No 2
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.08 E-value=1.3e+02 Score=27.74 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcCCcccccc
Q 041794 664 ECAKKLNEALRLHHKRRNCPDPSSLSKSISDM 695 (790)
Q Consensus 664 e~i~~lN~A~~~~h~~~~Cp~~~~~~~~~~~~ 695 (790)
|+...|.+.+... .+| ++.|+.-..++
T Consensus 44 eVk~IM~~NIdkv-LeR----GEkLd~L~~KT 70 (119)
T 2kog_A 44 EVVDIMRVNVDKV-LER----DQKLSELDDRA 70 (119)
T ss_dssp HHHHHHHHHHHHH-HCC----CCSSCCCCSCC
T ss_pred HHHHHHHHHHHHH-HHc----ccHHHHHHHHH
Confidence 6778888888877 667 56655544333
No 3
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=16.26 E-value=2.7e+02 Score=29.00 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=45.1
Q ss_pred CcCEEEEEeCCeEeecCCCCCcC-CCCCCceeee--eecccccchhHh-------hhhcccCCCccCCCCCceeeeHHHH
Q 041794 103 NVDWVVILDADMIIRGPIIPWEL-GAEKGRPVAA--LYGYLIGCNNIL-------AKLHTKHPELCDKVGGLLAMHIDDL 172 (790)
Q Consensus 103 ~~~~VlmlDpD~I~~rPl~p~~~-~a~~G~pvA~--~fgYi~g~~n~l-------ak~~~~~pe~~d~vG~~~im~~dDL 172 (790)
+.||++-+|.||+|..++-+..+ +...|.-+|+ ++.|-.+.++-- +-+.+.......-.|+..==...+.
T Consensus 87 evDyLf~~dvd~~F~~~vG~E~L~p~~~~~lva~lHp~~y~~~~~~fpYERrp~S~AyIp~~eGdfYY~ga~fGG~~~~v 166 (246)
T 4ayl_A 87 ETDYLFFFNANLLFTSPIGKEILPPSDSNGLLGTMHPGFYNKPNSEFTYERRDASTAYIPEGEGRYYYAGGLSGGCTKAY 166 (246)
T ss_dssp HCSEEEEECTTEEECSCBCGGGSCCTTSCCEEEEBCGGGC------------------------CCCBCSSEEEEEHHHH
T ss_pred hCCEEEEEeCCceeeccCCHHHcccCCCCCEEEEechhhhCCCcccCcccCCccccccccCCCCCeEEeeeecCCcHHHH
Confidence 35899999999999999988764 4455667777 445655433210 0011111111223333333356666
Q ss_pred HhhhhhhhhhhHHHhhccc
Q 041794 173 RALAPLWLSKTEEVREDRA 191 (790)
Q Consensus 173 ~~iAP~W~~~t~~vr~D~~ 191 (790)
.+++-. ....|.+|.+
T Consensus 167 l~Lt~~---c~~~i~~D~~ 182 (246)
T 4ayl_A 167 LKLCTT---ICSWVDRDAT 182 (246)
T ss_dssp HHHHHH---HHHHHHHHHT
T ss_pred HHHHHH---HHHHHHHHHh
Confidence 676665 5555666644
No 4
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=12.15 E-value=1e+02 Score=28.95 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=29.9
Q ss_pred CcEEEEecCceeeeCCCCCcccccCCCccccccccccccCch
Q 041794 465 AEFIVILDADMIMRGPITPWEYKAERGRPVSTPYDYLIGCNN 506 (790)
Q Consensus 465 e~~IlmlDpD~I~~rPl~~~~~~a~~G~pva~~f~Yi~~~~n 506 (790)
.|=+|.||.|+|-+-|-..-...-..|...+++|.=|++|+-
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K~ 69 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVKK 69 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEEE
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEEe
Confidence 467899999999999886432234578889999999988753
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.76 E-value=1.7e+02 Score=22.96 Aligned_cols=7 Identities=29% Similarity=0.036 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 041794 743 IAIWAFC 749 (790)
Q Consensus 743 ~~~~~~~ 749 (790)
||.=++.
T Consensus 12 IA~gVVg 18 (44)
T 2l2t_A 12 IAAGVIG 18 (44)
T ss_dssp HHHHHHH
T ss_pred EEEeehH
Confidence 4443333
No 6
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=10.57 E-value=1e+02 Score=31.90 Aligned_cols=114 Identities=11% Similarity=0.146 Sum_probs=55.9
Q ss_pred EEEEEeecCCCCcchhhhHHHHHH-HHhCCCCCce-EEee-c-ChhhhhcccCC-----CCcCceecCC--CCCCCCCCC
Q 041794 12 IHTLFSVECRNYFDWQTVGLMRSF-KKAGQPGPVT-RLLS-C-TDEDMKKYKGM-----HLAPTMEVPS--MSRHPKTGD 80 (790)
Q Consensus 12 ~HtvfSt~cs~Y~~WQsri~y~s~-kk~~qpG~fT-RILs-c-tddel~~~~~m-----deiPT~~vp~--~~~~~~~gd 80 (790)
+|++|++|.+ .-=++.++.+|. .+.. ...+. =|++ . +++..+.++.+ ..+.-..+++ +..-+.+..
T Consensus 1 m~I~~~~d~~--Y~~~~~vli~Sl~l~~~-~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (311)
T 1g9r_A 1 MDIVFAADDN--YAAYLCVAAKSVEAAHP-DTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIR 77 (311)
T ss_dssp CEEEEEECGG--GHHHHHHHHHHHHHTCT-TSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCCCT
T ss_pred CeEEEECCHh--HHHHHHHHHHHHHHHcC-CCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccccc
Confidence 6899998766 344677889998 4433 33332 3555 2 34443333221 1111111221 111111111
Q ss_pred C--ccccccchHHHHHHhcCCCCCCcCEEEEEeCCeEeecCCCCCcCCCCCCceeee
Q 041794 81 W--YPAINKPAGIVHWLKHSKDAENVDWVVILDADMIIRGPIIPWELGAEKGRPVAA 135 (790)
Q Consensus 81 ~--Y~v~NKP~Av~~WL~~a~~~~~~~~VlmlDpD~I~~rPl~p~~~~a~~G~pvA~ 135 (790)
. ...|-|=+ +-+.| + +-+-||-||+|+|++++|......--.|.++|+
T Consensus 78 ~~s~~~y~Rl~-l~~ll----~--~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aa 127 (311)
T 1g9r_A 78 HISITTYARLK-LGEYI----A--DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA 127 (311)
T ss_dssp TCCGGGGGGGG-HHHHC----C--SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEE
T ss_pred cCCHHHHHHHH-HHHHh----h--hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEE
Confidence 1 12222222 12223 1 246899999999999999854221124666665
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.53 E-value=2.2e+02 Score=23.28 Aligned_cols=27 Identities=37% Similarity=0.766 Sum_probs=18.7
Q ss_pred ccccchhHHHHHHHHHHhhHHHHHHHH
Q 041794 733 GLFSSLRFWVIAIWAFCGLGFLLVMFV 759 (790)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (790)
|.+...-.|+|.+=++.|+-.|+++..
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~ 28 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLIL 28 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHH
Confidence 445567789998877777766665544
No 8
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=10.04 E-value=3.2e+02 Score=29.05 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=45.6
Q ss_pred CcCEEEEEeCCeEeecCCCCCcCCCCCCceeee--eecccccchhHhhhhcccCCC----------ccCCCCCceeeeHH
Q 041794 103 NVDWVVILDADMIIRGPIIPWELGAEKGRPVAA--LYGYLIGCNNILAKLHTKHPE----------LCDKVGGLLAMHID 170 (790)
Q Consensus 103 ~~~~VlmlDpD~I~~rPl~p~~~~a~~G~pvA~--~fgYi~g~~n~lak~~~~~pe----------~~d~vG~~~im~~d 170 (790)
+.||++.+|.||+|.+++.+..+ |.-+|+ ++.|..+...-- ..++|+ ...-.|+..==...
T Consensus 138 evDYLf~~dvd~~F~~~vG~E~L----g~lv~~lHp~~y~~~~~~fp---YERrp~S~AyIp~~eGdfYY~Ga~fGGt~~ 210 (289)
T 1o7q_A 138 EVDFLFCMDVDQVFQDKFGVETL----GESVAQLQAWWYKADPNDFT---YERRKESAAYIPFGEGDFYYHAAIFGGTPT 210 (289)
T ss_dssp HCSEEEEECSSEEECSCBCGGGC----SSEEEEECTTTTTSCGGGSC---CCCCTTSTTCCCTTCCSCCEEEEEEEECHH
T ss_pred cCCEEEEeeCCcEeeccCCHHHH----HHHHHccCHHHhCCCCCCCC---CCCCcCceeeecCCCCCEEEEceeeCCcHH
Confidence 56999999999999999987644 345555 455544422100 112221 11222333333567
Q ss_pred HHHhhhhhhhhhhHHHhhccc
Q 041794 171 DLRALAPLWLSKTEEVREDRA 191 (790)
Q Consensus 171 DL~~iAP~W~~~t~~vr~D~~ 191 (790)
+..+++-. ....|.+|.+
T Consensus 211 ~vl~l~~~---c~~~i~~D~~ 228 (289)
T 1o7q_A 211 QVLNITQE---CFKGILKDKK 228 (289)
T ss_dssp HHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHh
Confidence 77777766 5566666754
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.72 E-value=2e+02 Score=22.45 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=2.8
Q ss_pred Hhhhccc
Q 041794 759 VLFSGCK 765 (790)
Q Consensus 759 ~~~~~~~ 765 (790)
++|.+||
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3444443
No 10
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=8.71 E-value=2.4e+02 Score=26.48 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=28.8
Q ss_pred cCEEEEEeCCeEeecCCCCCcCCCCCCceeeeeecccccch
Q 041794 104 VDWVVILDADMIIRGPIIPWELGAEKGRPVAALYGYLIGCN 144 (790)
Q Consensus 104 ~~~VlmlDpD~I~~rPl~p~~~~a~~G~pvA~~fgYi~g~~ 144 (790)
.+=+|.||.|+|-+-|-..-...-..|+..++.|.=+++|.
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K 68 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVK 68 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEE
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEE
Confidence 46789999999999887532222346888888898888885
Done!