Query 041794
Match_columns 790
No_of_seqs 203 out of 236
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 18:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041794.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041794hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ga8a_ c.68.1.4 (A:) Galactos 41.8 8.2 0.0006 36.7 3.8 164 12-184 1-178 (282)
2 d1ga8a_ c.68.1.4 (A:) Galactos 35.0 8.6 0.00062 36.5 2.6 163 375-544 1-177 (282)
3 d1ll2a_ c.68.1.14 (A:) Glycoge 24.9 30 0.0022 32.1 4.5 104 13-123 6-114 (263)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 12.1 91 0.0066 21.4 3.2 23 740-764 4-26 (34)
5 d1lzia_ c.68.1.9 (A:) Glycosyl 10.6 55 0.004 32.3 2.4 23 103-125 141-163 (283)
6 d1o7qa_ c.68.1.9 (A:) alpha-1, 10.0 59 0.0043 32.1 2.4 23 103-125 136-158 (287)
7 d1ll2a_ c.68.1.14 (A:) Glycoge 8.6 82 0.006 28.9 2.8 22 463-484 93-114 (263)
8 d1aiea_ a.53.1.1 (A:) p53 tetr 8.2 1.1E+02 0.0083 20.4 2.5 16 304-319 13-28 (31)
9 d1lzia_ c.68.1.9 (A:) Glycosyl 8.0 85 0.0062 30.8 2.6 84 464-552 141-231 (283)
10 d2axte1 f.23.38.1 (E:3-84) Cyt 7.8 1.2E+02 0.0086 24.6 2.9 25 734-758 11-38 (82)
No 1
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=41.76 E-value=8.2 Score=36.66 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=77.6
Q ss_pred EEEEEeecCCCCcchhhhHHHHHHHHhCCCCCc-eEEeec--ChhhhhcccCCCC---cCcee--c--CCCCCCCCCCCC
Q 041794 12 IHTLFSVECRNYFDWQTVGLMRSFKKAGQPGPV-TRLLSC--TDEDMKKYKGMHL---APTME--V--PSMSRHPKTGDW 81 (790)
Q Consensus 12 ~HtvfSt~cs~Y~~WQsri~y~s~kk~~qpG~f-TRILsc--tddel~~~~~mde---iPT~~--v--p~~~~~~~~gd~ 81 (790)
+|+||++|.+ | -=++.++.+|.++....-.+ --|+++ +++..+.++.+-+ ....+ + +.+...+.....
T Consensus 1 mnIv~~~D~n-Y-~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (282)
T d1ga8a_ 1 MDIVFAADDN-Y-AAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRH 78 (282)
T ss_dssp CEEEEEECGG-G-HHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTSCCCCTT
T ss_pred CEEEEECCHH-H-HHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhccccccccc
Confidence 5899998765 4 34577888898876432232 235663 3444433322211 11111 1 112221222222
Q ss_pred ccc--cccchHHHHHHhcCCCCCCcCEEEEEeCCeEeecCCCCCcCCCCCCceeeeeecccccchhHhhhhcccCCCccC
Q 041794 82 YPA--INKPAGIVHWLKHSKDAENVDWVVILDADMIIRGPIIPWELGAEKGRPVAALYGYLIGCNNILAKLHTKHPELCD 159 (790)
Q Consensus 82 Y~v--~NKP~Av~~WL~~a~~~~~~~~VlmlDpD~I~~rPl~p~~~~a~~G~pvA~~fgYi~g~~n~lak~~~~~pe~~d 159 (790)
+.. |-| ..+-..| + +-+-||-||+|+|++++|.+....--.+..+|+--.+..+..+...+...-.+..+.
T Consensus 79 ~s~~~y~R-l~l~~~l----p--~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~y 151 (282)
T d1ga8a_ 79 ISITTYAR-LKLGEYI----A--DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYY 151 (282)
T ss_dssp CCGGGGGG-GGHHHHC----C--SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCC
T ss_pred cCHHHHHH-HHHhhhC----C--ccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCCCCCce
Confidence 222 111 1122222 1 235799999999999999864222235666666554433322211111111111112
Q ss_pred CCCCceeeeHHHHHh--hhhhhhhhhH
Q 041794 160 KVGGLLAMHIDDLRA--LAPLWLSKTE 184 (790)
Q Consensus 160 ~vG~~~im~~dDL~~--iAP~W~~~t~ 184 (790)
--.|.++|+.+.+++ +...++++..
T Consensus 152 fNsGVml~n~~~~r~~~~~~~~~~~~~ 178 (282)
T d1ga8a_ 152 FNAGVLLINLKKWRRHDIFKMSSEWVE 178 (282)
T ss_dssp EEEEEEEECHHHHTTSCHHHHHHHHHH
T ss_pred eecceeeechhhhhhhhHHHHHHHHHH
Confidence 224567888887764 3444444433
No 2
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=34.96 E-value=8.6 Score=36.51 Aligned_cols=163 Identities=11% Similarity=0.170 Sum_probs=75.0
Q ss_pred eEEEEecCCCCCcchhHHHHHHHHHHhCCCCCc-eEEeecC--hhhhccccCC-C--CcCeEEc----CCCCCCCCCCCC
Q 041794 375 IHTIFSTECTPYFDWQTVGLVHSFHLSGQPGNI-TRLLSCT--DEDLKKYEGH-D--LAPTHYV----PSMSQHPLTGDW 444 (790)
Q Consensus 375 ~HvvfSt~cs~Y~~WQsr~~y~s~k~~gqpG~f-TRILsct--~edl~~~~~m-d--~iPThvv----Ps~s~~pl~~d~ 444 (790)
+|+||++|.. | -=++.++.+|.++...--.+ --|++++ +++.+....+ . .+...+. +.+...+.....
T Consensus 1 mnIv~~~D~n-Y-~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (282)
T d1ga8a_ 1 MDIVFAADDN-Y-AAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRH 78 (282)
T ss_dssp CEEEEEECGG-G-HHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTSCCCCTT
T ss_pred CEEEEECCHH-H-HHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhccccccccc
Confidence 5888887765 4 33567888888776433222 2356654 3332222111 1 1121221 122222322222
Q ss_pred cccc--cchHHHHHHHhhcCCCCcEEEEecCceeeeCCCCCcccccCCCccccccccccccCchhhhhccccCCCCCCCC
Q 041794 445 YPAI--NKPAAVLHWLNHADTDAEFIVILDADMIMRGPITPWEYKAERGRPVSTPYDYLIGCNNELAKLHTRHPDACDKV 522 (790)
Q Consensus 445 Y~v~--NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~~~~~~a~~G~pva~~f~Yi~~~~n~l~k~~~~~pe~~d~v 522 (790)
+... -| ..+-..| ++-+-||-||+|+|+++++.......-++..+|+--++..+......+.....+....=-
T Consensus 79 ~s~~~y~R-l~l~~~l----p~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfN 153 (282)
T d1ga8a_ 79 ISITTYAR-LKLGEYI----ADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFN 153 (282)
T ss_dssp CCGGGGGG-GGHHHHC----CSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEE
T ss_pred cCHHHHHH-HHHhhhC----CccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCCCCCceee
Confidence 2221 11 0111112 234679999999999999976422233455555544443332222211111111111112
Q ss_pred CCeEEEeHhHHHH--HHHHHhhhh
Q 041794 523 GGVIIMHIDDLRK--FAMLWLHKT 544 (790)
Q Consensus 523 G~p~im~~~DL~~--iAP~W~~~t 544 (790)
.|.++|+.+.+++ +...++++.
T Consensus 154 sGVml~n~~~~r~~~~~~~~~~~~ 177 (282)
T d1ga8a_ 154 AGVLLINLKKWRRHDIFKMSSEWV 177 (282)
T ss_dssp EEEEEECHHHHTTSCHHHHHHHHH
T ss_pred cceeeechhhhhhhhHHHHHHHHH
Confidence 3578888777653 344444433
No 3
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.87 E-value=30 Score=32.13 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=51.2
Q ss_pred EEEEeecCCCCcchhhhHHHHHHHHhCCCCCceEEe-e-c--ChhhhhcccCCCCcCceecCCCCCCCCCCCCccccccc
Q 041794 13 HTLFSVECRNYFDWQTVGLMRSFKKAGQPGPVTRLL-S-C--TDEDMKKYKGMHLAPTMEVPSMSRHPKTGDWYPAINKP 88 (790)
Q Consensus 13 HtvfSt~cs~Y~~WQsri~y~s~kk~~qpG~fTRIL-s-c--tddel~~~~~mdeiPT~~vp~~~~~~~~gd~Y~v~NKP 88 (790)
.|.+.|| ..|.. ++.++.+|.++.+.. ..+|+ . . +++.++.++.+. .....++.+...... .....++.
T Consensus 6 ~vt~~t~-d~Yl~-~a~vl~~SL~~~~~~--~~~vvl~~~~i~~~~~~~L~~~~-~~~~~v~~i~~~~~~--~~~~~~~~ 78 (263)
T d1ll2a_ 6 FVTLTTN-DAYAK-GALVLGSSLKQHRTS--RRLAVLTTPQVSDTMRKALEIVF-DEVITVDILDSGDSA--HLTLMKRP 78 (263)
T ss_dssp EEEEESS-HHHHH-HHHHHHHHHHHTTCC--SEEEEEECTTSCHHHHHHHHHHC-SEEEECCTTSTTSTT--HHHHHHCG
T ss_pred EEEEEeC-HHHHH-HHHHHHHHHHHHCCC--CCEEEEECCCCCHHHHHHHHHhC-CcceeEEeecCcchh--hhhhhccc
Confidence 4445443 45766 789999999998543 23343 3 2 345554443221 112223322211000 00111111
Q ss_pred hHHHHHHhcCC-CCCCcCEEEEEeCCeEeecCCCCC
Q 041794 89 AGIVHWLKHSK-DAENVDWVVILDADMIIRGPIIPW 123 (790)
Q Consensus 89 ~Av~~WL~~a~-~~~~~~~VlmlDpD~I~~rPl~p~ 123 (790)
+-..-|.+=-- ...+.|-||-||+|+|++++|.+.
T Consensus 79 ~~~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 79 ELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp GGHHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGG
T ss_pred cchhhhHHHHHhhhcccceEEEeCCCEEEecCHHHH
Confidence 11111222110 112457899999999999999865
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.12 E-value=91 Score=21.44 Aligned_cols=23 Identities=26% Similarity=0.883 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhcc
Q 041794 740 FWVIAIWAFCGLGFLLVMFVLFSGC 764 (790)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (790)
+|+|+. +.+.+-+.|+-.+|-|.
T Consensus 4 LWlv~t--v~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 4 LWIVAT--VAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred EEEeee--hhhhhhHhheeeeeeee
Confidence 577664 45566666777777776
No 5
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.64 E-value=55 Score=32.27 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.1
Q ss_pred CcCEEEEEeCCeEeecCCCCCcC
Q 041794 103 NVDWVVILDADMIIRGPIIPWEL 125 (790)
Q Consensus 103 ~~~~VlmlDpD~I~~rPl~p~~~ 125 (790)
+.||++-+|+||+|..++.+..+
T Consensus 141 e~DyLf~~DaDm~f~~~vg~E~L 163 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGVEIL 163 (283)
T ss_dssp HCSEEEEECSSEEECSCBCGGGC
T ss_pred cCCEEEEeecceEEecccccEEe
Confidence 45899999999999999987655
No 6
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.05 E-value=59 Score=32.08 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.9
Q ss_pred CcCEEEEEeCCeEeecCCCCCcC
Q 041794 103 NVDWVVILDADMIIRGPIIPWEL 125 (790)
Q Consensus 103 ~~~~VlmlDpD~I~~rPl~p~~~ 125 (790)
+.||++-+|+||+|..++.+..+
T Consensus 136 e~Dylf~~DaDm~f~~~vg~E~L 158 (287)
T d1o7qa_ 136 EVDFLFCMDVDQVFQDKFGVETL 158 (287)
T ss_dssp HCSEEEEECSSEEECSCBCGGGC
T ss_pred cCCeEEEEeCCceEecccccccc
Confidence 46999999999999999987544
No 7
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=8.65 E-value=82 Score=28.89 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.0
Q ss_pred CCCcEEEEecCceeeeCCCCCc
Q 041794 463 TDAEFIVILDADMIMRGPITPW 484 (790)
Q Consensus 463 i~e~~IlmlDpD~I~~rPl~~~ 484 (790)
.+.+-||-||+|+|+++++...
T Consensus 93 ~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 93 TQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cccceEEEeCCCEEEecCHHHH
Confidence 3568899999999999999864
No 8
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.25 E-value=1.1e+02 Score=20.37 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 041794 304 IECINTINEGLLLQHT 319 (790)
Q Consensus 304 ie~i~~lN~al~~~h~ 319 (790)
.||...||+||.+.-.
T Consensus 13 femfrelnealelkda 28 (31)
T d1aiea_ 13 FEMFRELNEALELKDA 28 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhc
Confidence 5889999999987543
No 9
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.98 E-value=85 Score=30.79 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=44.4
Q ss_pred CCcEEEEecCceeeeCCCCCcccccCCCccccccccccccCc---hhhhhccccC-CC---CCCCCCCeEEEeHhHHHHH
Q 041794 464 DAEFIVILDADMIMRGPITPWEYKAERGRPVSTPYDYLIGCN---NELAKLHTRH-PD---ACDKVGGVIIMHIDDLRKF 536 (790)
Q Consensus 464 ~e~~IlmlDpD~I~~rPl~~~~~~a~~G~pva~~f~Yi~~~~---n~l~k~~~~~-pe---~~d~vG~p~im~~~DL~~i 536 (790)
+-||++-+|+||+|..++.+.+++ +=.++-.|..|-.+.. -|-+..+..+ |+ ..+=-|+..=-...+..++
T Consensus 141 e~DyLf~~DaDm~f~~~vg~E~L~--~lvgv~HP~~y~~~~~~~~yErrp~S~AyIp~~egd~Yy~G~~~GG~~~~vl~m 218 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGVEILT--PLFGTLHPGFYGSSREAFTYERRPQSQAYIPKDEGDFYYLGGFFGGSVQEVQRL 218 (283)
T ss_dssp HCSEEEEECSSEEECSCBCGGGCS--SEEEEBCTTTTTCCGGGSCCCCCTTSTTCCCTTCCSCCBCTTEEEEEHHHHHHH
T ss_pred cCCEEEEeecceEEecccccEEec--CeeeEecccccCCCCCCCCcccCcceeeeccCCCCCeEEEeeeeCCCHHHHHHH
Confidence 458999999999999999986542 1122223334422110 0111111111 11 1122244555577777777
Q ss_pred HHHHhhhhHhhhhchh
Q 041794 537 AMLWLHKTEEVRADKA 552 (790)
Q Consensus 537 AP~W~~~t~~vr~D~~ 552 (790)
+.. +..+|.+|.+
T Consensus 219 ~~~---~~~~i~~D~~ 231 (283)
T d1lzia_ 219 TRA---CHQAMMVDQA 231 (283)
T ss_dssp HHH---HHHHHHHHHH
T ss_pred HHH---HHHHHHHHhc
Confidence 753 4556667766
No 10
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.82 E-value=1.2e+02 Score=24.55 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=16.7
Q ss_pred cccchhHHHHHH---HHHHhhHHHHHHH
Q 041794 734 LFSSLRFWVIAI---WAFCGLGFLLVMF 758 (790)
Q Consensus 734 ~~~~~~~~~~~~---~~~~~~~~~~~~~ 758 (790)
+..|.|+|||=. =++.+.|||.|-.
T Consensus 11 IitsiRYWvIHsiTIPslFiaGwlFVst 38 (82)
T d2axte1 11 IITSVRYWVIHSITIPALFIAGWLFVST 38 (82)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhheeeEEEEEeecccHHHHhhhhheec
Confidence 346889999754 3456677777654
Done!