BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041795
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 3/171 (1%)
Query: 2 ASTSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFT 61
S SF S +Y+V LSFRG DTR+ FT LY +L R KI TF + DE+ +G +I P L
Sbjct: 27 PSGSFPSV-EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLR 85
Query: 62 AIQGSKISVIVLSKHYASSKWCLHELVKILECKSTNG-QIVVPVFYHVDPSDVRKQTGSF 120
AI SKI V ++S YA SKWCL EL +I+ + + +I++P+FY VDPSDVR QTG +
Sbjct: 86 AIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCY 145
Query: 121 RDAFVKHKKQM-AEKVQKWRDALTEASNLSGWNSMTIRSEAELVDVIVKDI 170
+ AF KH + + +Q W+DAL + +L GW+ + + D + DI
Sbjct: 146 KKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 3/167 (1%)
Query: 8 SSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSK 67
+++KYDV LSFRG DTR NF S LY L R+ I+TF + E+ G SP L + I+ S+
Sbjct: 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSR 64
Query: 68 ISVIVLSKHYASSKWCLHELVKILECKSTNGQIVVPVFYHVDPSDVRKQTGSFRDAFVKH 127
+V+V+S++YA+S WCL ELV I++ + V+P+FY V+P+ VR QTG + F KH
Sbjct: 65 FAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH 124
Query: 128 -KKQMAEKVQKWRDALTEASNLSGWNSMTIRSEAELVDVIVKDILKK 173
++ EKV KWR ALT + LSG + +++LVD I +I K
Sbjct: 125 ASREDPEKVLKWRQALTNFAQLSG--DCSGDDDSKLVDKIANEISNK 169
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 3 STSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTA 62
+ +S+ +D+ +S D D F L L + + + +R GD + ++
Sbjct: 12 NADLTSAPPHDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKG 70
Query: 63 IQGSKISVIVLSKHYASSKWCLHELVKILECKSTNGQIVVPVFYHVDPSDVRKQTGSFRD 122
+ S+ ++VLS H+ +W EL + + +S+ ++P+++ V +V + + D
Sbjct: 71 LGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
Query: 123 --AFVKHKKQMAEKV 135
AF K + E V
Sbjct: 131 KLAFNTSTKSVDEIV 145
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum-
His121ala Mutant
Length = 561
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 148 LSGWNSMTIRSEAELVDVIVKDILKKLENITVSTNFDGLV-----GLNSRIEKIKSLLC- 201
++GW +T+ A + VI+ D + L ITV+T G V G + IE I + L
Sbjct: 68 MAGWTPLTVEKGANVEKVILADTMTHLNGITVNTG--GPVATVTAGAGASIEAIVTELQK 125
Query: 202 --IGRPDFRIVGIWGMGGT-------------GKTTLAGAIF 228
+G + G+ +GG G+TTL G +
Sbjct: 126 HDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTY 167
>pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob
pdb|2XSX|B Chain B, Crystal Structure Of Human Beta Enolase Enob
Length = 435
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 6 FSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+ S+ + V +S R G+T D F + L LC +IKT
Sbjct: 360 LAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 396
>pdb|3TQP|A Chain A, Structure Of An Enolase (Eno) From Coxiella Burnetii
pdb|3TQP|B Chain B, Structure Of An Enolase (Eno) From Coxiella Burnetii
Length = 428
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1 MASTSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+A+ + S+KY V +S R G+T D + L A ++IKT
Sbjct: 348 LATVGLAKSNKYGVIISHRSGETEDTTIADLAVATDARQIKT 389
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 23/102 (22%)
Query: 148 LSGWNSMTIRSEAELVDVIVKDILKKLENITVSTNFDGLV-----GLNSRIEKIKSLLC- 201
+ GW +T+ A + VI+ D + L ITV+T G V G + IE I + L
Sbjct: 68 MHGWTPLTVEKGANVEKVILADTMTHLNGITVNTG--GPVATVTAGAGASIEAIVTELQK 125
Query: 202 --IGRPDFRIVGIWGMGGT-------------GKTTLAGAIF 228
+G + G+ +GG G+TTL G +
Sbjct: 126 HDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTY 167
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 1 MASTSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+ + + ++ + V +S R G+T D F + L LC +IKT
Sbjct: 354 LQACKLAQANGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 395
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 1 MASTSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+ + + ++ + V +S R G+T D F + L LC +IKT
Sbjct: 353 LQACKLAQANGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 52 GDDISPALFTAIQGSKISVIVLSKHYASSKWCLHEL 87
G I + T I+ S S+ VLS ++ S+WC +EL
Sbjct: 52 GKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYEL 87
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 6 FSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+ + + V +S R G+T D F + L LC +IKT
Sbjct: 358 LAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 6 FSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+ + + V +S R G+T D F + L LC +IKT
Sbjct: 358 LAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 6 FSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+ + + V +S R G+T D F + L LC +IKT
Sbjct: 358 LAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 308 EALELFCNCAFKENHCPSGFLASSKRVLKVLGSFFHRKSKLDWEKALENISRISDPDIYD 367
EA E C A K + G +++ G+F W + L IS +DP YD
Sbjct: 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF--------WGRTLSAISSSTDPTSYD 195
Query: 368 VLK--------ISYNDLSLEEKSI 383
I YNDL E+++
Sbjct: 196 GFGPFMPGFDIIPYNDLPALERAL 219
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 308 EALELFCNCAFKENHCPSGFLASSKRVLKVLGSFFHRKSKLDWEKALENISRISDPDIYD 367
EA E C A K + G +++ G+F W + L IS +DP YD
Sbjct: 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF--------WGRTLSAISSSTDPTSYD 195
Query: 368 VLK--------ISYNDLSLEEKSI 383
I YNDL E+++
Sbjct: 196 GFGPFMPGFDIIPYNDLPALERAL 219
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 308 EALELFCNCAFKENHCPSGFLASSKRVLKVLGSFFHRKSKLDWEKALENISRISDPDIYD 367
EA E C A K + G +++ G+F W + L IS +DP YD
Sbjct: 107 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF--------WGRTLSAISSSTDPTSYD 158
Query: 368 VLK--------ISYNDLSLEEKSI 383
I YNDL E+++
Sbjct: 159 GFGPFMPGFDIIPYNDLPALERAL 182
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 308 EALELFCNCAFKENHCPSGFLASSKRVLKVLGSFFHRKSKLDWEKALENISRISDPDIYD 367
EA E C A K + G +++ G+F W + L IS +DP YD
Sbjct: 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF--------WGRTLSAISSSTDPTSYD 195
Query: 368 VLK--------ISYNDLSLEEKSI 383
I YNDL E+++
Sbjct: 196 GFGPFMPGFDIIPYNDLPALERAL 219
>pdb|3HJX|A Chain A, Human Prion Protein Variant D178n With V129
Length = 106
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 406 NFPHNGLNILIAKSLVTVSNDNKIQMHDLLQEMGREVVRQECIKEPGKRSRLWYH 460
NF HN +NI I + VT + + ++ M R VV Q CI + + S+ +Y
Sbjct: 49 NFVHNCVNITIKQHTVTTTTKGENFTETDVKMMER-VVEQMCITQYERESQAYYQ 102
>pdb|3HEQ|A Chain A, Human Prion Protein Variant D178n With M129
pdb|3HEQ|B Chain B, Human Prion Protein Variant D178n With M129
Length = 142
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 406 NFPHNGLNILIAKSLVTVSNDNKIQMHDLLQEMGREVVRQECIKEPGKRSRLWYH 460
NF HN +NI I + VT + + ++ M R VV Q CI + + S+ +Y
Sbjct: 85 NFVHNCVNITIKQHTVTTTTKGENFTETDVKMMER-VVEQMCITQYERESQAYYQ 138
>pdb|2K1D|A Chain A, Nmr Studies Of A Pathogenic Mutant (D178n) Of The Human
Prion Protein
Length = 146
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 406 NFPHNGLNILIAKSLVTVSNDNKIQMHDLLQEMGREVVRQECIKEPGKRSRLWYH 460
NF HN +NI I + VT + + ++ M R VV Q CI + + S+ +Y
Sbjct: 89 NFVHNCVNITIKQHTVTTTTKGENFTETDVKMMER-VVEQMCITQYERESQAYYQ 142
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 91 LECKSTNGQIVVPVFYHVDPSDVRKQTGSFRDAFVKHKKQM 131
LE GQ+ VP YH P DV K+ G A ++ +KQ+
Sbjct: 78 LEGAVQAGQLKVPPGYH--PLDVEKEWGKLHVAILEREKQL 116
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 176 NITVSTNFDGLVGLNSRIEKIKSLLCIGRPDFRI-----------VGIWGMGGTGKTTLA 224
NI V N+ V N+ +EK+ LLC G + VG+ G GG G +
Sbjct: 135 NIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVK 194
Query: 225 GAI 227
A+
Sbjct: 195 YAV 197
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 91 LECKSTNGQIVVPVFYHVDPSDVRKQTGSFRDAFVKHKKQM 131
LE GQ+ VP YH P DV K+ G A ++ +KQ+
Sbjct: 78 LEGAVQAGQLKVPPGYH--PLDVEKEWGKLHVAILEREKQL 116
>pdb|1OEP|A Chain A, Structure Of Trypanosoma Brucei Enolase Reveals The
Inhibitory Divalent Metal Site
Length = 432
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 1 MASTSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+AS+ + + V +S R G+T D + + L AL +IKT
Sbjct: 357 IASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKT 398
>pdb|2PTW|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
Sulphate, Identification Of A Metal Binding Site Iv
pdb|2PTX|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
Sulphate In Closed Conformation
pdb|2PTY|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
Pep
pdb|2PTZ|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
Phosphonoacetohydroxamate (Pah), His156-Out Conformation
pdb|2PU0|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
Phosphonoacetohydroxamate (Pah), His156-In Conformation
pdb|2PU1|A Chain A, Crystal Structure Of The T. Brucei Enolase Complexed With
Fluoro-Phosphonoacetohydroxamate (Fpah)
Length = 432
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 1 MASTSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKT 42
+AS+ + + V +S R G+T D + + L AL +IKT
Sbjct: 357 IASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKT 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,152,506
Number of Sequences: 62578
Number of extensions: 599193
Number of successful extensions: 1715
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1691
Number of HSP's gapped (non-prelim): 37
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)