Query 041795
Match_columns 471
No_of_seqs 330 out of 2756
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.4E-88 9.6E-93 767.2 42.8 465 1-471 1-529 (1153)
2 PLN03194 putative disease resi 100.0 3.4E-42 7.4E-47 301.7 14.5 161 2-176 17-179 (187)
3 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-40 2.8E-45 362.5 16.9 254 187-444 161-496 (889)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.2E-32 4.7E-37 267.3 6.1 216 189-405 1-278 (287)
5 PF01582 TIR: TIR domain; Int 99.8 3.5E-22 7.5E-27 174.1 0.5 129 14-142 1-139 (141)
6 smart00255 TIR Toll - interleu 99.8 1.2E-20 2.7E-25 164.1 9.8 134 11-146 1-138 (140)
7 PF13676 TIR_2: TIR domain; PD 99.6 6.9E-17 1.5E-21 132.5 4.0 91 14-113 1-91 (102)
8 PRK04841 transcriptional regul 99.1 8E-09 1.7E-13 116.9 20.0 252 182-446 12-335 (903)
9 TIGR00635 ruvB Holliday juncti 98.9 1.9E-08 4.1E-13 99.2 13.8 241 184-428 4-293 (305)
10 KOG3678 SARM protein (with ste 98.8 9.3E-09 2E-13 101.3 9.1 92 8-105 609-708 (832)
11 PRK00080 ruvB Holliday junctio 98.8 1.8E-08 3.9E-13 100.4 11.3 243 182-427 23-313 (328)
12 PRK00411 cdc6 cell division co 98.6 1.7E-06 3.7E-11 88.5 15.9 235 182-424 28-358 (394)
13 PF05729 NACHT: NACHT domain 98.5 2.6E-07 5.6E-12 82.0 8.4 107 208-316 1-162 (166)
14 PRK06893 DNA replication initi 98.5 4.5E-07 9.8E-12 85.5 9.7 112 207-320 39-177 (229)
15 PF01637 Arch_ATPase: Archaeal 98.5 4E-07 8.7E-12 85.5 7.5 45 186-232 1-45 (234)
16 COG2909 MalT ATP-dependent tra 98.5 4.2E-06 9E-11 89.3 15.5 252 183-447 18-342 (894)
17 TIGR02928 orc1/cdc6 family rep 98.4 1.8E-05 3.9E-10 80.0 18.1 51 182-232 13-65 (365)
18 COG2256 MGS1 ATPase related to 98.4 9.1E-07 2E-11 87.0 8.1 123 184-316 30-175 (436)
19 TIGR01242 26Sp45 26S proteasom 98.3 3.5E-06 7.5E-11 85.3 9.6 147 184-332 122-322 (364)
20 PF08937 DUF1863: MTH538 TIR-l 98.2 2E-06 4.4E-11 73.5 6.2 89 12-105 1-106 (130)
21 TIGR03420 DnaA_homol_Hda DnaA 98.2 6.7E-06 1.4E-10 77.2 9.2 130 184-317 15-172 (226)
22 PRK07003 DNA polymerase III su 98.1 2E-05 4.2E-10 84.4 11.8 134 182-317 14-191 (830)
23 PRK13342 recombination factor 98.1 1.4E-05 3E-10 82.3 9.3 128 183-317 11-164 (413)
24 PF13173 AAA_14: AAA domain 98.1 7.6E-06 1.6E-10 69.8 6.2 102 207-309 2-127 (128)
25 cd00009 AAA The AAA+ (ATPases 98.0 1.8E-05 3.9E-10 68.0 8.2 44 187-232 1-44 (151)
26 COG3899 Predicted ATPase [Gene 98.0 3.5E-05 7.7E-10 85.7 12.4 253 186-443 2-386 (849)
27 PRK14963 DNA polymerase III su 98.0 4E-05 8.6E-10 80.3 11.9 135 183-319 13-190 (504)
28 PRK08903 DnaA regulatory inact 98.0 4.1E-05 8.9E-10 72.1 9.8 130 184-316 18-169 (227)
29 PF13191 AAA_16: AAA ATPase do 98.0 6.5E-06 1.4E-10 74.5 3.8 50 185-234 1-51 (185)
30 PRK12402 replication factor C 97.9 6E-05 1.3E-09 75.3 10.4 132 183-317 14-197 (337)
31 PRK08727 hypothetical protein; 97.9 4.7E-05 1E-09 72.0 9.0 131 184-318 19-176 (233)
32 PRK03992 proteasome-activating 97.9 7.5E-05 1.6E-09 76.1 10.8 148 184-333 131-332 (389)
33 COG3903 Predicted ATPase [Gene 97.9 3E-06 6.4E-11 83.9 0.4 233 206-445 13-316 (414)
34 PRK14960 DNA polymerase III su 97.9 6.2E-05 1.4E-09 79.7 10.0 134 182-318 13-191 (702)
35 PRK14961 DNA polymerase III su 97.9 8.1E-05 1.8E-09 75.2 10.5 133 182-317 14-191 (363)
36 PRK08084 DNA replication initi 97.9 7.4E-05 1.6E-09 70.7 9.6 111 206-318 44-181 (235)
37 PRK13341 recombination factor 97.9 4.5E-05 9.8E-10 83.0 9.0 129 183-317 27-181 (725)
38 PF00308 Bac_DnaA: Bacterial d 97.9 0.0001 2.2E-09 69.0 10.1 111 206-318 33-180 (219)
39 PLN03025 replication factor C 97.9 5E-05 1.1E-09 75.4 8.5 133 183-318 12-172 (319)
40 PRK05564 DNA polymerase III su 97.8 7.7E-05 1.7E-09 73.9 9.5 131 184-316 4-164 (313)
41 PRK09087 hypothetical protein; 97.8 4.2E-05 9E-10 71.9 6.8 103 207-318 44-167 (226)
42 PRK04195 replication factor C 97.8 0.00017 3.6E-09 75.8 11.6 131 183-318 13-174 (482)
43 PRK14962 DNA polymerase III su 97.8 0.00027 5.9E-09 73.5 12.8 134 183-318 13-190 (472)
44 KOG2028 ATPase related to the 97.8 7.9E-05 1.7E-09 72.4 8.0 105 204-315 159-292 (554)
45 PRK07471 DNA polymerase III su 97.8 0.00026 5.7E-09 71.2 12.1 134 182-317 17-213 (365)
46 TIGR02881 spore_V_K stage V sp 97.8 0.00012 2.6E-09 70.5 9.2 130 185-318 7-192 (261)
47 PRK05642 DNA replication initi 97.7 0.00013 2.8E-09 69.1 8.9 110 207-318 45-180 (234)
48 PF08357 SEFIR: SEFIR domain; 97.7 3.6E-05 7.8E-10 67.5 4.6 65 13-77 2-70 (150)
49 PRK14949 DNA polymerase III su 97.7 9.5E-05 2.1E-09 80.8 8.2 134 182-317 14-191 (944)
50 PRK14957 DNA polymerase III su 97.7 0.00015 3.2E-09 76.4 9.4 133 182-317 14-191 (546)
51 PHA02544 44 clamp loader, smal 97.7 8.4E-05 1.8E-09 73.6 7.2 132 182-315 19-171 (316)
52 PRK12323 DNA polymerase III su 97.7 8.5E-05 1.9E-09 78.6 7.4 134 182-317 14-196 (700)
53 PRK00440 rfc replication facto 97.7 0.00013 2.8E-09 72.2 8.5 132 183-318 16-175 (319)
54 PRK06645 DNA polymerase III su 97.7 0.00022 4.8E-09 74.6 10.3 136 182-319 19-202 (507)
55 PRK14951 DNA polymerase III su 97.7 0.00051 1.1E-08 73.4 13.1 133 182-317 14-196 (618)
56 PRK07940 DNA polymerase III su 97.7 0.00021 4.5E-09 72.6 9.7 132 184-316 5-188 (394)
57 PRK14956 DNA polymerase III su 97.7 0.00022 4.8E-09 73.4 9.8 134 182-317 16-193 (484)
58 PRK14964 DNA polymerase III su 97.6 0.00024 5.2E-09 73.8 9.7 135 182-318 11-189 (491)
59 PRK06620 hypothetical protein; 97.6 0.00016 3.4E-09 67.4 7.6 105 208-318 45-161 (214)
60 PTZ00202 tuzin; Provisional 97.6 8.1E-05 1.7E-09 74.9 5.5 52 181-232 259-311 (550)
61 PRK08691 DNA polymerase III su 97.6 0.00023 4.9E-09 76.2 9.0 134 182-318 14-192 (709)
62 PRK07764 DNA polymerase III su 97.6 0.00046 1E-08 76.3 11.4 132 183-317 14-192 (824)
63 TIGR02397 dnaX_nterm DNA polym 97.6 0.00057 1.2E-08 68.8 11.4 134 182-318 12-190 (355)
64 TIGR02880 cbbX_cfxQ probable R 97.6 0.00042 9.1E-09 67.5 9.9 133 185-317 23-208 (284)
65 PRK09112 DNA polymerase III su 97.5 0.0012 2.7E-08 66.1 12.9 134 182-317 21-213 (351)
66 PRK07994 DNA polymerase III su 97.5 0.00021 4.7E-09 76.4 7.8 133 182-317 14-191 (647)
67 TIGR02639 ClpA ATP-dependent C 97.5 0.00033 7.1E-09 77.3 9.2 47 184-232 182-228 (731)
68 PRK14958 DNA polymerase III su 97.5 0.0011 2.4E-08 69.7 12.6 134 182-317 14-191 (509)
69 TIGR02903 spore_lon_C ATP-depe 97.5 0.0013 2.8E-08 71.0 13.2 48 182-231 152-199 (615)
70 CHL00181 cbbX CbbX; Provisiona 97.5 0.00072 1.6E-08 65.9 10.3 134 185-318 24-210 (287)
71 TIGR03689 pup_AAA proteasome A 97.5 0.00085 1.8E-08 70.1 11.2 132 184-317 182-378 (512)
72 PRK05896 DNA polymerase III su 97.5 0.00048 1E-08 72.9 9.4 133 182-317 14-191 (605)
73 PTZ00454 26S protease regulato 97.5 0.00069 1.5E-08 69.0 10.3 133 183-317 144-329 (398)
74 PF05496 RuvB_N: Holliday junc 97.5 0.00016 3.5E-09 66.7 5.1 137 182-318 22-193 (233)
75 TIGR00678 holB DNA polymerase 97.4 0.00099 2.1E-08 60.7 9.9 120 195-316 3-167 (188)
76 KOG0989 Replication factor C, 97.4 0.00041 8.8E-09 66.3 7.0 156 182-343 34-225 (346)
77 PTZ00112 origin recognition co 97.4 0.0022 4.9E-08 69.8 13.2 51 182-232 753-806 (1164)
78 TIGR03015 pepcterm_ATPase puta 97.4 0.0008 1.7E-08 64.9 9.2 26 207-232 43-68 (269)
79 PRK14954 DNA polymerase III su 97.4 0.0018 3.9E-08 69.4 12.4 133 182-317 14-199 (620)
80 PTZ00361 26 proteosome regulat 97.4 0.00072 1.6E-08 69.5 9.0 132 184-317 183-367 (438)
81 PRK09111 DNA polymerase III su 97.3 0.0012 2.7E-08 70.5 10.7 134 182-317 22-204 (598)
82 PRK14955 DNA polymerase III su 97.3 0.00053 1.1E-08 70.2 7.0 134 182-317 14-199 (397)
83 PRK14970 DNA polymerase III su 97.3 0.0012 2.6E-08 66.9 9.3 135 182-318 15-181 (367)
84 PRK14969 DNA polymerase III su 97.3 0.00089 1.9E-08 70.8 8.5 132 183-317 15-191 (527)
85 PRK00149 dnaA chromosomal repl 97.2 0.0028 6.1E-08 66.0 12.0 110 207-318 148-294 (450)
86 PRK14952 DNA polymerase III su 97.2 0.0012 2.7E-08 70.2 9.4 134 182-317 11-190 (584)
87 TIGR00362 DnaA chromosomal rep 97.2 0.0017 3.6E-08 66.8 10.1 110 207-318 136-282 (405)
88 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0012 2.7E-08 73.6 9.3 48 183-232 186-233 (852)
89 PRK14086 dnaA chromosomal repl 97.2 0.0015 3.2E-08 69.3 9.3 110 207-318 314-460 (617)
90 PRK14950 DNA polymerase III su 97.2 0.0021 4.6E-08 69.1 10.5 134 183-318 15-193 (585)
91 PRK11034 clpA ATP-dependent Cl 97.2 0.0012 2.5E-08 72.5 8.4 46 184-231 186-231 (758)
92 CHL00095 clpC Clp protease ATP 97.1 0.0014 3E-08 73.3 8.7 47 184-232 179-225 (821)
93 PRK14087 dnaA chromosomal repl 97.1 0.0022 4.8E-08 66.6 9.6 110 207-318 141-289 (450)
94 PRK09376 rho transcription ter 97.1 0.00038 8.2E-09 69.6 3.7 40 207-246 169-209 (416)
95 PRK14971 DNA polymerase III su 97.1 0.0053 1.1E-07 66.1 12.6 135 182-318 15-194 (614)
96 PRK14959 DNA polymerase III su 97.1 0.0019 4.2E-08 68.7 9.0 133 183-318 15-192 (624)
97 PRK06305 DNA polymerase III su 97.1 0.0036 7.8E-08 65.0 10.5 133 182-317 15-193 (451)
98 PRK12422 chromosomal replicati 97.0 0.0018 3.9E-08 67.1 7.8 110 207-318 141-285 (445)
99 PRK10865 protein disaggregatio 97.0 0.0035 7.6E-08 70.2 10.4 48 184-233 178-225 (857)
100 TIGR01241 FtsH_fam ATP-depende 97.0 0.0035 7.6E-08 66.1 10.0 134 182-317 53-238 (495)
101 PF13207 AAA_17: AAA domain; P 97.0 0.0005 1.1E-08 57.6 3.0 23 209-231 1-23 (121)
102 PRK08451 DNA polymerase III su 97.0 0.005 1.1E-07 64.8 10.8 134 182-317 12-189 (535)
103 PRK14088 dnaA chromosomal repl 97.0 0.0055 1.2E-07 63.5 11.1 110 207-318 130-277 (440)
104 COG1222 RPT1 ATP-dependent 26S 97.0 0.0068 1.5E-07 59.4 10.5 144 184-334 151-353 (406)
105 PRK07133 DNA polymerase III su 97.0 0.004 8.7E-08 67.4 9.9 132 183-317 17-190 (725)
106 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00097 2.1E-08 66.2 4.9 50 184-233 51-104 (361)
107 PRK06647 DNA polymerase III su 96.9 0.0051 1.1E-07 65.5 10.4 134 182-318 14-192 (563)
108 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0043 9.3E-08 69.7 10.3 48 184-233 173-220 (852)
109 PRK14953 DNA polymerase III su 96.9 0.0044 9.5E-08 64.9 9.4 133 182-317 14-191 (486)
110 PRK05707 DNA polymerase III su 96.9 0.0058 1.3E-07 60.7 9.9 109 207-316 22-177 (328)
111 cd01128 rho_factor Transcripti 96.9 0.00083 1.8E-08 63.9 3.5 40 207-246 16-56 (249)
112 PRK05563 DNA polymerase III su 96.9 0.0077 1.7E-07 64.3 11.2 133 182-317 14-191 (559)
113 PF14532 Sigma54_activ_2: Sigm 96.8 0.00059 1.3E-08 58.9 2.1 99 187-285 1-110 (138)
114 PRK08118 topology modulation p 96.8 0.00086 1.9E-08 59.9 2.9 33 209-241 3-38 (167)
115 PRK06696 uridine kinase; Valid 96.8 0.0016 3.4E-08 61.2 4.7 45 189-233 3-48 (223)
116 PRK14948 DNA polymerase III su 96.8 0.0087 1.9E-07 64.5 10.9 133 183-317 15-193 (620)
117 CHL00176 ftsH cell division pr 96.8 0.004 8.7E-08 67.1 8.2 133 183-317 182-366 (638)
118 TIGR02640 gas_vesic_GvpN gas v 96.7 0.006 1.3E-07 58.7 8.4 24 208-231 22-45 (262)
119 PRK08116 hypothetical protein; 96.7 0.0023 5.1E-08 61.7 5.5 35 208-242 115-149 (268)
120 PF02562 PhoH: PhoH-like prote 96.7 0.0051 1.1E-07 56.6 7.2 47 192-242 8-56 (205)
121 PRK14965 DNA polymerase III su 96.7 0.0044 9.5E-08 66.4 7.7 133 182-317 14-191 (576)
122 PRK07667 uridine kinase; Provi 96.7 0.0035 7.5E-08 57.4 6.0 41 193-233 3-43 (193)
123 PF13401 AAA_22: AAA domain; P 96.6 0.0024 5.1E-08 54.2 4.4 27 207-233 4-30 (131)
124 PRK08058 DNA polymerase III su 96.6 0.0093 2E-07 59.4 9.2 129 186-316 7-181 (329)
125 PRK08181 transposase; Validate 96.6 0.0016 3.4E-08 62.7 3.5 35 208-242 107-141 (269)
126 PRK12377 putative replication 96.6 0.0026 5.6E-08 60.5 4.9 36 207-242 101-136 (248)
127 TIGR01243 CDC48 AAA family ATP 96.6 0.013 2.8E-07 64.9 11.1 132 184-317 453-635 (733)
128 PRK10536 hypothetical protein; 96.6 0.0043 9.2E-08 58.8 6.2 51 184-238 55-107 (262)
129 PF13177 DNA_pol3_delta2: DNA 96.6 0.0073 1.6E-07 53.6 7.4 115 189-305 2-162 (162)
130 TIGR00763 lon ATP-dependent pr 96.6 0.0067 1.4E-07 67.5 8.7 52 184-235 320-375 (775)
131 TIGR02639 ClpA ATP-dependent C 96.6 0.011 2.3E-07 65.5 10.1 49 184-232 454-509 (731)
132 COG1618 Predicted nucleotide k 96.6 0.0022 4.7E-08 55.8 3.6 35 208-242 6-41 (179)
133 COG2255 RuvB Holliday junction 96.6 0.0022 4.7E-08 60.8 3.9 53 183-235 25-80 (332)
134 COG0466 Lon ATP-dependent Lon 96.6 0.0026 5.6E-08 67.4 4.8 53 184-236 323-379 (782)
135 KOG0730 AAA+-type ATPase [Post 96.6 0.012 2.6E-07 61.9 9.5 148 184-333 434-632 (693)
136 COG1474 CDC6 Cdc6-related prot 96.6 0.023 4.9E-07 57.3 11.4 53 182-234 15-69 (366)
137 COG0593 DnaA ATPase involved i 96.5 0.018 3.8E-07 58.3 10.2 111 206-318 112-258 (408)
138 TIGR01243 CDC48 AAA family ATP 96.5 0.019 4.1E-07 63.6 11.2 52 183-234 177-239 (733)
139 PRK15455 PrkA family serine pr 96.5 0.0032 6.9E-08 65.9 4.6 50 184-233 76-129 (644)
140 PRK05541 adenylylsulfate kinas 96.4 0.0034 7.4E-08 56.4 4.4 37 206-242 6-42 (176)
141 PRK09183 transposase/IS protei 96.4 0.0026 5.5E-08 61.1 3.6 24 208-231 103-126 (259)
142 COG2812 DnaX DNA polymerase II 96.4 0.032 7E-07 58.2 11.8 133 183-318 15-192 (515)
143 PRK06921 hypothetical protein; 96.4 0.0029 6.3E-08 61.0 3.9 36 207-242 117-153 (266)
144 PRK06526 transposase; Provisio 96.4 0.002 4.4E-08 61.5 2.6 26 207-232 98-123 (254)
145 PRK10787 DNA-binding ATP-depen 96.4 0.012 2.5E-07 65.3 8.6 52 184-235 322-377 (784)
146 PF00910 RNA_helicase: RNA hel 96.4 0.0028 6E-08 52.1 2.9 26 210-235 1-26 (107)
147 PRK07261 topology modulation p 96.3 0.0027 5.7E-08 57.0 2.7 23 209-231 2-24 (171)
148 PF01695 IstB_IS21: IstB-like 96.3 0.0016 3.6E-08 58.7 1.4 36 207-242 47-82 (178)
149 PF13238 AAA_18: AAA domain; P 96.3 0.0028 6.2E-08 53.3 2.7 22 210-231 1-22 (129)
150 PF00004 AAA: ATPase family as 96.3 0.0031 6.8E-08 53.3 2.8 25 210-234 1-25 (132)
151 PRK07399 DNA polymerase III su 96.3 0.026 5.7E-07 55.7 9.7 131 184-317 4-195 (314)
152 PF00485 PRK: Phosphoribulokin 96.3 0.0033 7.1E-08 57.6 3.1 25 209-233 1-25 (194)
153 PRK06835 DNA replication prote 96.3 0.005 1.1E-07 61.1 4.6 35 208-242 184-218 (329)
154 PRK10865 protein disaggregatio 96.2 0.03 6.6E-07 62.8 11.2 49 184-232 568-623 (857)
155 TIGR00767 rho transcription te 96.2 0.0044 9.5E-08 62.4 3.7 39 207-245 168-207 (415)
156 CHL00195 ycf46 Ycf46; Provisio 96.2 0.048 1E-06 57.1 11.5 133 184-318 228-406 (489)
157 TIGR03346 chaperone_ClpB ATP-d 96.1 0.031 6.7E-07 62.9 10.7 49 184-232 565-620 (852)
158 PRK06964 DNA polymerase III su 96.1 0.021 4.7E-07 56.8 8.3 64 252-316 137-203 (342)
159 KOG0741 AAA+-type ATPase [Post 96.1 0.014 3.1E-07 59.7 6.8 108 205-317 536-686 (744)
160 PF13671 AAA_33: AAA domain; P 96.1 0.0045 9.8E-08 53.3 2.9 24 209-232 1-24 (143)
161 PRK06762 hypothetical protein; 96.1 0.0051 1.1E-07 54.7 3.3 24 208-231 3-26 (166)
162 PRK05480 uridine/cytidine kina 96.0 0.0058 1.3E-07 56.6 3.7 26 206-231 5-30 (209)
163 PRK08233 hypothetical protein; 96.0 0.0052 1.1E-07 55.3 3.2 26 207-232 3-28 (182)
164 PRK11331 5-methylcytosine-spec 96.0 0.0081 1.8E-07 61.4 4.9 45 184-232 175-219 (459)
165 smart00382 AAA ATPases associa 96.0 0.0064 1.4E-07 51.3 3.6 28 208-235 3-30 (148)
166 PRK03839 putative kinase; Prov 96.0 0.005 1.1E-07 55.6 3.0 24 209-232 2-25 (180)
167 PF10137 TIR-like: Predicted n 96.0 0.017 3.6E-07 48.7 5.9 60 14-76 2-61 (125)
168 KOG2004 Mitochondrial ATP-depe 96.0 0.0076 1.6E-07 63.8 4.5 52 184-235 411-466 (906)
169 PF05673 DUF815: Protein of un 96.0 0.025 5.4E-07 53.1 7.5 52 182-233 25-78 (249)
170 COG0470 HolB ATPase involved i 96.0 0.023 5.1E-07 56.1 8.0 123 186-309 3-173 (325)
171 TIGR00235 udk uridine kinase. 96.0 0.007 1.5E-07 56.0 3.8 28 205-232 4-31 (207)
172 PRK09270 nucleoside triphospha 95.9 0.011 2.3E-07 55.7 5.0 31 204-234 30-60 (229)
173 TIGR03345 VI_ClpV1 type VI sec 95.9 0.023 5E-07 63.6 8.4 49 184-232 566-621 (852)
174 PTZ00301 uridine kinase; Provi 95.9 0.0061 1.3E-07 56.5 3.1 29 207-235 3-31 (210)
175 PRK00771 signal recognition pa 95.9 0.06 1.3E-06 55.5 10.7 29 206-234 94-122 (437)
176 cd02019 NK Nucleoside/nucleoti 95.9 0.006 1.3E-07 45.7 2.5 23 209-231 1-23 (69)
177 TIGR00064 ftsY signal recognit 95.9 0.035 7.5E-07 53.7 8.3 30 205-234 70-99 (272)
178 PF01583 APS_kinase: Adenylyls 95.9 0.01 2.3E-07 52.0 4.2 35 208-242 3-37 (156)
179 TIGR02237 recomb_radB DNA repa 95.9 0.011 2.5E-07 54.6 4.8 45 199-243 4-48 (209)
180 PRK09361 radB DNA repair and r 95.8 0.016 3.5E-07 54.2 5.7 49 195-243 11-59 (225)
181 PRK00131 aroK shikimate kinase 95.8 0.0074 1.6E-07 53.8 3.2 25 207-231 4-28 (175)
182 PRK00625 shikimate kinase; Pro 95.8 0.0067 1.5E-07 54.4 2.8 24 209-232 2-25 (173)
183 COG1373 Predicted ATPase (AAA+ 95.8 0.034 7.5E-07 56.8 8.3 99 209-311 39-161 (398)
184 cd01131 PilT Pilus retraction 95.8 0.024 5.2E-07 52.1 6.5 27 208-234 2-28 (198)
185 cd01394 radB RadB. The archaea 95.8 0.018 3.9E-07 53.6 5.8 49 194-242 6-54 (218)
186 PF07726 AAA_3: ATPase family 95.8 0.0072 1.6E-07 50.9 2.7 31 210-240 2-32 (131)
187 TIGR01425 SRP54_euk signal rec 95.8 0.043 9.3E-07 56.2 8.8 29 206-234 99-127 (429)
188 KOG2543 Origin recognition com 95.7 0.05 1.1E-06 53.9 8.6 50 182-231 4-54 (438)
189 cd01858 NGP_1 NGP-1. Autoanti 95.7 0.098 2.1E-06 45.9 9.9 23 207-229 102-124 (157)
190 COG0572 Udk Uridine kinase [Nu 95.7 0.012 2.7E-07 54.1 4.1 30 205-234 6-35 (218)
191 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0091 2E-07 54.0 3.2 26 206-231 2-27 (188)
192 CHL00095 clpC Clp protease ATP 95.6 0.038 8.3E-07 61.9 8.7 49 184-232 509-564 (821)
193 PRK08699 DNA polymerase III su 95.6 0.023 4.9E-07 56.4 6.2 109 207-316 21-184 (325)
194 PRK13531 regulatory ATPase Rav 95.6 0.012 2.5E-07 60.9 4.0 45 184-232 20-64 (498)
195 PRK04040 adenylate kinase; Pro 95.6 0.012 2.5E-07 53.7 3.6 25 208-232 3-27 (188)
196 COG1484 DnaC DNA replication p 95.5 0.011 2.4E-07 56.6 3.4 28 206-233 104-131 (254)
197 PRK13947 shikimate kinase; Pro 95.5 0.0093 2E-07 53.2 2.8 25 209-233 3-27 (171)
198 PRK00889 adenylylsulfate kinas 95.5 0.018 3.8E-07 51.7 4.5 28 206-233 3-30 (175)
199 PRK06547 hypothetical protein; 95.5 0.012 2.7E-07 52.7 3.5 26 205-230 13-38 (172)
200 KOG0728 26S proteasome regulat 95.5 0.092 2E-06 49.1 9.1 142 186-334 148-349 (404)
201 PRK08939 primosomal protein Dn 95.4 0.019 4.1E-07 56.4 4.8 28 207-234 156-183 (306)
202 PHA00729 NTP-binding motif con 95.4 0.02 4.4E-07 53.3 4.6 27 206-232 16-42 (226)
203 PRK03846 adenylylsulfate kinas 95.4 0.022 4.7E-07 52.3 4.8 37 205-241 22-58 (198)
204 PRK10416 signal recognition pa 95.4 0.059 1.3E-06 53.3 8.1 29 206-234 113-141 (318)
205 TIGR00150 HI0065_YjeE ATPase, 95.4 0.021 4.5E-07 48.8 4.2 26 206-231 21-46 (133)
206 PRK06871 DNA polymerase III su 95.4 0.12 2.6E-06 51.2 10.2 122 194-317 12-179 (325)
207 PF07728 AAA_5: AAA domain (dy 95.4 0.012 2.5E-07 50.6 2.7 23 210-232 2-24 (139)
208 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.01 2.2E-07 53.6 2.5 23 209-231 1-23 (183)
209 KOG0731 AAA+-type ATPase conta 95.3 0.29 6.3E-06 53.2 13.6 136 182-319 309-497 (774)
210 cd02028 UMPK_like Uridine mono 95.3 0.017 3.8E-07 52.1 3.8 25 209-233 1-25 (179)
211 cd00227 CPT Chloramphenicol (C 95.3 0.014 3.1E-07 52.4 3.1 25 208-232 3-27 (175)
212 PF00158 Sigma54_activat: Sigm 95.3 0.018 3.9E-07 51.4 3.7 45 186-230 1-45 (168)
213 cd02023 UMPK Uridine monophosp 95.2 0.012 2.5E-07 54.0 2.4 23 209-231 1-23 (198)
214 PRK06217 hypothetical protein; 95.2 0.014 3E-07 52.9 2.7 23 209-231 3-25 (183)
215 PRK14974 cell division protein 95.2 0.095 2.1E-06 52.1 8.8 28 206-233 139-166 (336)
216 PF03205 MobB: Molybdopterin g 95.2 0.016 3.5E-07 50.0 3.0 35 208-242 1-36 (140)
217 KOG1532 GTPase XAB1, interacts 95.2 0.025 5.5E-07 53.4 4.4 32 206-237 18-49 (366)
218 cd01393 recA_like RecA is a b 95.2 0.033 7.2E-07 52.1 5.3 48 195-242 7-60 (226)
219 cd02025 PanK Pantothenate kina 95.1 0.013 2.8E-07 54.8 2.5 24 209-232 1-24 (220)
220 COG0542 clpA ATP-binding subun 95.1 0.064 1.4E-06 58.4 8.0 50 184-233 491-547 (786)
221 cd02024 NRK1 Nicotinamide ribo 95.1 0.013 2.9E-07 53.1 2.4 23 209-231 1-23 (187)
222 COG0542 clpA ATP-binding subun 95.1 0.024 5.1E-07 61.7 4.6 47 184-232 170-216 (786)
223 TIGR02322 phosphon_PhnN phosph 95.1 0.016 3.5E-07 52.1 2.9 25 208-232 2-26 (179)
224 PRK10751 molybdopterin-guanine 95.1 0.026 5.6E-07 50.5 4.0 28 206-233 5-32 (173)
225 PRK13949 shikimate kinase; Pro 95.1 0.016 3.5E-07 51.8 2.8 24 209-232 3-26 (169)
226 PRK08769 DNA polymerase III su 95.1 0.15 3.3E-06 50.4 9.8 122 193-316 13-184 (319)
227 COG2607 Predicted ATPase (AAA+ 95.0 0.34 7.4E-06 45.2 11.2 57 182-238 58-116 (287)
228 PRK11889 flhF flagellar biosyn 95.0 0.056 1.2E-06 54.5 6.6 28 206-233 240-267 (436)
229 cd00464 SK Shikimate kinase (S 95.0 0.017 3.8E-07 50.3 2.8 22 210-231 2-23 (154)
230 PF00448 SRP54: SRP54-type pro 95.0 0.028 6E-07 51.6 4.2 28 207-234 1-28 (196)
231 COG0467 RAD55 RecA-superfamily 95.0 0.037 8E-07 53.1 5.3 47 198-244 14-60 (260)
232 cd02020 CMPK Cytidine monophos 95.0 0.016 3.6E-07 49.9 2.6 23 209-231 1-23 (147)
233 PRK05022 anaerobic nitric oxid 95.0 0.053 1.1E-06 57.4 6.8 47 184-230 187-233 (509)
234 PRK13948 shikimate kinase; Pro 95.0 0.021 4.5E-07 51.7 3.2 27 206-232 9-35 (182)
235 cd02021 GntK Gluconate kinase 95.0 0.016 3.4E-07 50.5 2.4 22 209-230 1-22 (150)
236 cd01123 Rad51_DMC1_radA Rad51_ 94.9 0.038 8.1E-07 52.1 5.0 48 195-242 7-60 (235)
237 PRK15429 formate hydrogenlyase 94.9 0.045 9.7E-07 60.2 6.2 47 184-230 376-422 (686)
238 PRK05439 pantothenate kinase; 94.9 0.036 7.8E-07 54.4 4.7 30 204-233 83-112 (311)
239 PRK13946 shikimate kinase; Pro 94.8 0.021 4.5E-07 51.8 2.9 26 207-232 10-35 (184)
240 cd01120 RecA-like_NTPases RecA 94.8 0.029 6.3E-07 48.9 3.6 34 209-242 1-34 (165)
241 PF10443 RNA12: RNA12 protein; 94.7 1.5 3.2E-05 44.7 15.9 39 189-229 1-40 (431)
242 COG1428 Deoxynucleoside kinase 94.7 0.023 5E-07 51.8 2.8 26 207-232 4-29 (216)
243 cd01133 F1-ATPase_beta F1 ATP 94.7 0.03 6.5E-07 53.8 3.7 39 207-245 69-107 (274)
244 PRK14530 adenylate kinase; Pro 94.7 0.023 5.1E-07 52.8 3.0 23 209-231 5-27 (215)
245 PRK10733 hflB ATP-dependent me 94.7 0.13 2.9E-06 56.0 9.0 108 208-317 186-335 (644)
246 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.049 1.1E-06 52.3 5.1 38 205-242 34-71 (259)
247 cd00071 GMPK Guanosine monopho 94.7 0.021 4.5E-07 49.2 2.3 25 209-233 1-25 (137)
248 KOG0744 AAA+-type ATPase [Post 94.7 0.024 5.2E-07 54.8 2.9 25 207-231 177-201 (423)
249 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.6 0.072 1.6E-06 46.2 5.7 25 207-231 26-50 (144)
250 COG0703 AroK Shikimate kinase 94.6 0.025 5.4E-07 50.2 2.8 28 208-235 3-30 (172)
251 PRK05057 aroK shikimate kinase 94.6 0.028 6.1E-07 50.4 3.2 25 207-231 4-28 (172)
252 PRK14738 gmk guanylate kinase; 94.6 0.03 6.4E-07 51.8 3.4 31 200-230 6-36 (206)
253 PRK12339 2-phosphoglycerate ki 94.6 0.029 6.3E-07 51.5 3.3 25 207-231 3-27 (197)
254 PRK10463 hydrogenase nickel in 94.6 0.053 1.2E-06 52.5 5.1 36 205-240 102-137 (290)
255 COG0563 Adk Adenylate kinase a 94.6 0.026 5.6E-07 50.9 2.8 23 209-231 2-24 (178)
256 TIGR03263 guanyl_kin guanylate 94.6 0.024 5.1E-07 51.0 2.5 24 208-231 2-25 (180)
257 TIGR00390 hslU ATP-dependent p 94.6 0.04 8.6E-07 55.9 4.3 50 184-233 12-73 (441)
258 PRK05537 bifunctional sulfate 94.6 0.047 1E-06 58.3 5.1 50 184-233 369-418 (568)
259 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.067 1.4E-06 50.2 5.6 48 195-242 8-55 (229)
260 cd01129 PulE-GspE PulE/GspE Th 94.5 0.11 2.3E-06 50.1 7.1 27 207-233 80-106 (264)
261 PLN02318 phosphoribulokinase/u 94.5 0.04 8.6E-07 58.2 4.3 33 199-231 57-89 (656)
262 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.066 1.4E-06 50.6 5.6 49 194-242 8-56 (237)
263 PF03308 ArgK: ArgK protein; 94.5 0.053 1.2E-06 51.2 4.8 40 194-233 16-55 (266)
264 PRK05201 hslU ATP-dependent pr 94.5 0.045 9.8E-07 55.6 4.5 50 184-233 15-76 (443)
265 TIGR01313 therm_gnt_kin carboh 94.5 0.023 5E-07 50.3 2.2 22 210-231 1-22 (163)
266 PRK06090 DNA polymerase III su 94.5 0.37 8E-06 47.6 10.8 121 194-316 13-179 (319)
267 PRK07993 DNA polymerase III su 94.5 0.25 5.4E-06 49.3 9.7 122 193-316 11-179 (334)
268 PRK13975 thymidylate kinase; P 94.4 0.032 7E-07 50.9 3.2 26 208-233 3-28 (196)
269 KOG0991 Replication factor C, 94.4 0.041 8.9E-07 50.9 3.7 50 182-233 25-74 (333)
270 PRK04182 cytidylate kinase; Pr 94.4 0.031 6.7E-07 50.1 3.0 24 209-232 2-25 (180)
271 KOG0734 AAA+-type ATPase conta 94.4 0.1 2.2E-06 53.9 6.7 47 184-230 304-360 (752)
272 PF03266 NTPase_1: NTPase; In 94.4 0.031 6.7E-07 49.9 2.8 24 210-233 2-25 (168)
273 PRK07952 DNA replication prote 94.4 0.069 1.5E-06 50.7 5.3 36 207-242 99-134 (244)
274 PF00625 Guanylate_kin: Guanyl 94.4 0.038 8.2E-07 50.0 3.4 32 207-238 2-33 (183)
275 cd02027 APSK Adenosine 5'-phos 94.4 0.029 6.3E-07 49.0 2.6 24 209-232 1-24 (149)
276 TIGR00959 ffh signal recogniti 94.4 0.26 5.7E-06 50.7 9.8 26 207-232 99-124 (428)
277 PRK00300 gmk guanylate kinase; 94.3 0.03 6.6E-07 51.5 2.8 25 207-231 5-29 (205)
278 TIGR03574 selen_PSTK L-seryl-t 94.3 0.038 8.2E-07 52.7 3.5 25 209-233 1-25 (249)
279 TIGR02012 tigrfam_recA protein 94.3 0.073 1.6E-06 52.5 5.5 49 195-243 42-91 (321)
280 COG1936 Predicted nucleotide k 94.3 0.03 6.5E-07 49.4 2.4 20 209-228 2-21 (180)
281 PRK03731 aroL shikimate kinase 94.3 0.034 7.4E-07 49.6 2.9 24 209-232 4-27 (171)
282 COG0714 MoxR-like ATPases [Gen 94.3 0.061 1.3E-06 53.6 5.0 48 184-235 24-71 (329)
283 TIGR00176 mobB molybdopterin-g 94.3 0.032 7E-07 49.1 2.6 26 209-234 1-26 (155)
284 COG1102 Cmk Cytidylate kinase 94.3 0.035 7.7E-07 48.4 2.7 24 209-232 2-25 (179)
285 TIGR00554 panK_bact pantothena 94.3 0.044 9.6E-07 53.3 3.8 28 205-232 60-87 (290)
286 PRK14493 putative bifunctional 94.3 0.051 1.1E-06 52.5 4.2 34 208-242 2-35 (274)
287 PRK10078 ribose 1,5-bisphospho 94.2 0.03 6.5E-07 50.8 2.5 24 208-231 3-26 (186)
288 COG0464 SpoVK ATPases of the A 94.2 0.38 8.2E-06 50.8 11.1 133 184-318 242-424 (494)
289 cd01121 Sms Sms (bacterial rad 94.2 0.075 1.6E-06 53.7 5.4 50 193-242 68-117 (372)
290 PRK15453 phosphoribulokinase; 94.2 0.063 1.4E-06 51.7 4.6 27 206-232 4-30 (290)
291 PF08298 AAA_PrkA: PrkA AAA do 94.2 0.071 1.5E-06 52.7 5.0 52 183-234 60-115 (358)
292 cd00983 recA RecA is a bacter 94.2 0.081 1.8E-06 52.2 5.4 49 195-243 42-91 (325)
293 PRK09435 membrane ATPase/prote 94.1 0.065 1.4E-06 53.2 4.8 39 195-233 44-82 (332)
294 KOG0733 Nuclear AAA ATPase (VC 94.1 0.062 1.3E-06 56.3 4.6 52 182-233 188-249 (802)
295 PRK14527 adenylate kinase; Pro 94.1 0.043 9.3E-07 50.0 3.3 26 206-231 5-30 (191)
296 COG1124 DppF ABC-type dipeptid 94.1 0.043 9.3E-07 51.2 3.2 27 207-233 33-59 (252)
297 PLN02200 adenylate kinase fami 94.1 0.046 1E-06 51.6 3.5 26 206-231 42-67 (234)
298 PRK06067 flagellar accessory p 94.1 0.087 1.9E-06 49.7 5.4 50 194-243 12-61 (234)
299 KOG0743 AAA+-type ATPase [Post 94.1 0.45 9.8E-06 48.4 10.5 136 207-345 235-417 (457)
300 COG1703 ArgK Putative periplas 94.0 0.067 1.5E-06 51.4 4.3 39 194-232 38-76 (323)
301 PF13521 AAA_28: AAA domain; P 94.0 0.041 9E-07 48.7 2.8 21 210-230 2-22 (163)
302 KOG3347 Predicted nucleotide k 94.0 0.041 8.9E-07 47.3 2.6 23 208-230 8-30 (176)
303 PF06309 Torsin: Torsin; Inte 94.0 0.091 2E-06 44.2 4.6 40 192-231 37-77 (127)
304 TIGR00073 hypB hydrogenase acc 94.0 0.061 1.3E-06 49.7 4.0 29 204-232 19-47 (207)
305 TIGR00602 rad24 checkpoint pro 94.0 0.052 1.1E-06 58.4 4.0 50 182-231 82-134 (637)
306 cd01857 HSR1_MMR1 HSR1/MMR1. 94.0 0.49 1.1E-05 40.7 9.4 47 57-105 3-49 (141)
307 TIGR02173 cyt_kin_arch cytidyl 93.9 0.045 9.7E-07 48.6 3.0 23 209-231 2-24 (171)
308 PF08477 Miro: Miro-like prote 93.9 0.044 9.5E-07 45.3 2.7 21 210-230 2-22 (119)
309 cd01428 ADK Adenylate kinase ( 93.9 0.042 9E-07 50.0 2.8 22 210-231 2-23 (194)
310 PLN02348 phosphoribulokinase 93.9 0.075 1.6E-06 53.5 4.7 30 204-233 46-75 (395)
311 PRK14532 adenylate kinase; Pro 93.9 0.042 9.1E-07 49.8 2.7 22 210-231 3-24 (188)
312 KOG2228 Origin recognition com 93.8 0.14 3.1E-06 50.0 6.2 47 184-230 24-72 (408)
313 cd01124 KaiC KaiC is a circadi 93.8 0.061 1.3E-06 48.5 3.7 34 209-242 1-34 (187)
314 cd01983 Fer4_NifH The Fer4_Nif 93.8 0.047 1E-06 42.9 2.6 25 209-233 1-25 (99)
315 PRK08154 anaerobic benzoate ca 93.8 0.07 1.5E-06 52.7 4.3 27 205-231 131-157 (309)
316 PLN02796 D-glycerate 3-kinase 93.8 0.22 4.8E-06 49.4 7.7 28 206-233 99-126 (347)
317 KOG0727 26S proteasome regulat 93.8 0.072 1.6E-06 49.8 4.0 51 185-235 156-217 (408)
318 PRK09354 recA recombinase A; P 93.8 0.11 2.4E-06 51.8 5.6 50 195-244 47-97 (349)
319 COG2019 AdkA Archaeal adenylat 93.8 0.057 1.2E-06 47.4 3.1 25 207-231 4-28 (189)
320 COG1763 MobB Molybdopterin-gua 93.8 0.05 1.1E-06 48.0 2.9 28 207-234 2-29 (161)
321 PHA02244 ATPase-like protein 93.8 0.058 1.3E-06 53.9 3.6 45 184-232 96-144 (383)
322 PRK14531 adenylate kinase; Pro 93.7 0.053 1.1E-06 49.1 3.1 23 209-231 4-26 (183)
323 PLN00020 ribulose bisphosphate 93.7 0.052 1.1E-06 54.1 3.1 30 205-234 146-175 (413)
324 TIGR00750 lao LAO/AO transport 93.7 0.092 2E-06 51.6 4.8 31 203-233 30-60 (300)
325 TIGR02902 spore_lonB ATP-depen 93.7 0.1 2.2E-06 55.6 5.4 45 184-230 65-109 (531)
326 PRK08533 flagellar accessory p 93.6 0.072 1.6E-06 50.2 3.9 37 205-242 22-59 (230)
327 PRK09825 idnK D-gluconate kina 93.6 0.054 1.2E-06 48.8 2.8 25 208-232 4-28 (176)
328 PTZ00088 adenylate kinase 1; P 93.6 0.052 1.1E-06 51.0 2.8 23 209-231 8-30 (229)
329 PRK06761 hypothetical protein; 93.6 0.056 1.2E-06 52.3 3.1 34 208-241 4-38 (282)
330 COG0237 CoaE Dephospho-CoA kin 93.6 0.056 1.2E-06 49.6 2.9 22 208-229 3-24 (201)
331 PRK04328 hypothetical protein; 93.6 0.12 2.6E-06 49.3 5.3 48 195-242 11-58 (249)
332 PRK14737 gmk guanylate kinase; 93.6 0.06 1.3E-06 48.9 3.1 25 207-231 4-28 (186)
333 PRK11608 pspF phage shock prot 93.6 0.065 1.4E-06 53.3 3.6 47 184-230 6-52 (326)
334 cd00820 PEPCK_HprK Phosphoenol 93.5 0.058 1.2E-06 44.1 2.6 22 207-228 15-36 (107)
335 PHA02530 pseT polynucleotide k 93.5 0.056 1.2E-06 52.9 3.1 24 208-231 3-26 (300)
336 PF06745 KaiC: KaiC; InterPro 93.5 0.059 1.3E-06 50.5 3.1 48 195-242 7-55 (226)
337 PF03215 Rad17: Rad17 cell cyc 93.5 0.11 2.3E-06 54.8 5.3 46 186-231 21-69 (519)
338 TIGR00416 sms DNA repair prote 93.5 0.13 2.7E-06 53.6 5.7 50 193-242 80-129 (454)
339 cd03116 MobB Molybdenum is an 93.5 0.07 1.5E-06 47.2 3.3 27 208-234 2-28 (159)
340 PRK13695 putative NTPase; Prov 93.5 0.078 1.7E-06 47.5 3.7 33 209-241 2-35 (174)
341 TIGR03499 FlhF flagellar biosy 93.5 0.068 1.5E-06 52.0 3.5 28 206-233 193-220 (282)
342 cd03115 SRP The signal recogni 93.5 0.094 2E-06 46.8 4.2 26 209-234 2-27 (173)
343 PRK05342 clpX ATP-dependent pr 93.5 0.083 1.8E-06 54.2 4.3 25 208-232 109-133 (412)
344 PRK08356 hypothetical protein; 93.4 0.065 1.4E-06 49.0 3.2 21 208-228 6-26 (195)
345 KOG0726 26S proteasome regulat 93.4 0.085 1.8E-06 50.4 3.9 52 184-235 185-247 (440)
346 PF03193 DUF258: Protein of un 93.4 0.1 2.2E-06 46.1 4.1 35 191-230 24-58 (161)
347 cd01672 TMPK Thymidine monopho 93.4 0.064 1.4E-06 48.7 3.1 25 209-233 2-26 (200)
348 PF08433 KTI12: Chromatin asso 93.4 0.06 1.3E-06 51.9 2.9 26 208-233 2-27 (270)
349 PRK01184 hypothetical protein; 93.4 0.061 1.3E-06 48.6 2.8 18 208-225 2-19 (184)
350 PF04665 Pox_A32: Poxvirus A32 93.3 0.087 1.9E-06 49.7 3.8 35 208-242 14-48 (241)
351 COG4088 Predicted nucleotide k 93.3 0.066 1.4E-06 48.7 2.8 28 208-235 2-29 (261)
352 cd02022 DPCK Dephospho-coenzym 93.3 0.055 1.2E-06 48.8 2.4 21 209-229 1-21 (179)
353 KOG0735 AAA+-type ATPase [Post 93.3 0.071 1.5E-06 56.8 3.4 27 207-233 431-457 (952)
354 PF00437 T2SE: Type II/IV secr 93.2 0.12 2.6E-06 49.8 4.9 50 185-234 105-154 (270)
355 PRK13768 GTPase; Provisional 93.2 0.11 2.4E-06 49.7 4.4 26 208-233 3-28 (253)
356 KOG1969 DNA replication checkp 93.2 0.07 1.5E-06 57.0 3.2 26 205-230 324-349 (877)
357 PRK08099 bifunctional DNA-bind 93.2 0.067 1.4E-06 54.6 3.0 26 206-231 218-243 (399)
358 PRK12724 flagellar biosynthesi 93.1 0.22 4.8E-06 50.8 6.6 25 207-231 223-247 (432)
359 COG1875 NYN ribonuclease and A 93.1 0.13 2.9E-06 50.7 4.8 24 204-227 242-265 (436)
360 COG0529 CysC Adenylylsulfate k 93.1 0.14 3.1E-06 45.5 4.5 35 205-239 21-55 (197)
361 cd01130 VirB11-like_ATPase Typ 93.1 0.08 1.7E-06 48.1 3.2 26 207-232 25-50 (186)
362 TIGR01351 adk adenylate kinase 93.1 0.068 1.5E-06 49.5 2.7 22 210-231 2-23 (210)
363 PRK12338 hypothetical protein; 93.0 0.079 1.7E-06 52.1 3.2 25 207-231 4-28 (319)
364 PRK05703 flhF flagellar biosyn 93.0 0.16 3.5E-06 52.3 5.6 26 207-232 221-246 (424)
365 TIGR02858 spore_III_AA stage I 93.0 0.29 6.3E-06 47.2 7.0 28 206-233 110-137 (270)
366 PLN02165 adenylate isopentenyl 93.0 0.084 1.8E-06 52.1 3.3 27 206-232 42-68 (334)
367 TIGR01420 pilT_fam pilus retra 93.0 0.21 4.5E-06 50.1 6.3 34 207-240 122-155 (343)
368 PRK11823 DNA repair protein Ra 93.0 0.17 3.6E-06 52.6 5.7 50 193-242 66-115 (446)
369 PRK00279 adk adenylate kinase; 93.0 0.074 1.6E-06 49.5 2.8 23 209-231 2-24 (215)
370 COG4608 AppF ABC-type oligopep 93.0 0.082 1.8E-06 50.2 3.1 29 206-234 38-66 (268)
371 TIGR00041 DTMP_kinase thymidyl 93.0 0.087 1.9E-06 48.0 3.2 26 208-233 4-29 (195)
372 COG2884 FtsE Predicted ATPase 93.0 0.29 6.3E-06 44.1 6.3 25 207-231 28-52 (223)
373 TIGR02655 circ_KaiC circadian 92.9 0.16 3.5E-06 53.4 5.6 51 192-242 248-298 (484)
374 PF03029 ATP_bind_1: Conserved 92.9 0.084 1.8E-06 50.0 3.1 23 212-234 1-23 (238)
375 PRK02496 adk adenylate kinase; 92.9 0.078 1.7E-06 47.9 2.8 23 209-231 3-25 (184)
376 COG3640 CooC CO dehydrogenase 92.9 0.089 1.9E-06 48.8 3.1 25 209-233 2-26 (255)
377 TIGR02974 phageshock_pspF psp 92.9 0.097 2.1E-06 52.1 3.7 45 186-230 1-45 (329)
378 COG0396 sufC Cysteine desulfur 92.9 0.17 3.7E-06 46.9 4.9 24 206-229 29-52 (251)
379 TIGR00455 apsK adenylylsulfate 92.9 0.15 3.1E-06 46.2 4.5 27 206-232 17-43 (184)
380 KOG0066 eIF2-interacting prote 92.9 0.37 7.9E-06 48.7 7.5 75 252-345 727-804 (807)
381 PF00005 ABC_tran: ABC transpo 92.9 0.065 1.4E-06 45.7 2.1 34 207-241 11-44 (137)
382 PRK14490 putative bifunctional 92.9 0.098 2.1E-06 53.0 3.7 30 207-236 5-34 (369)
383 cd03114 ArgK-like The function 92.8 0.08 1.7E-06 46.2 2.7 25 209-233 1-25 (148)
384 PF01078 Mg_chelatase: Magnesi 92.8 0.14 3E-06 47.0 4.3 42 184-229 3-44 (206)
385 PF06068 TIP49: TIP49 C-termin 92.8 0.16 3.5E-06 50.5 5.0 57 182-238 22-81 (398)
386 smart00072 GuKc Guanylate kina 92.8 0.085 1.8E-06 47.8 2.9 26 207-232 2-27 (184)
387 PRK05973 replicative DNA helic 92.8 0.17 3.7E-06 47.7 4.9 37 206-242 63-99 (237)
388 TIGR03880 KaiC_arch_3 KaiC dom 92.8 0.19 4.2E-06 46.9 5.4 48 195-242 4-51 (224)
389 PRK04301 radA DNA repair and r 92.8 0.18 3.9E-06 49.9 5.4 50 194-243 89-144 (317)
390 COG1126 GlnQ ABC-type polar am 92.7 0.081 1.8E-06 48.6 2.6 22 207-228 28-49 (240)
391 cd04139 RalA_RalB RalA/RalB su 92.7 0.079 1.7E-06 46.2 2.6 22 209-230 2-23 (164)
392 PF00406 ADK: Adenylate kinase 92.7 0.072 1.6E-06 46.5 2.3 20 212-231 1-20 (151)
393 cd00561 CobA_CobO_BtuR ATP:cor 92.7 0.2 4.4E-06 44.1 5.0 23 208-230 3-25 (159)
394 COG0465 HflB ATP-dependent Zn 92.7 0.71 1.5E-05 49.1 9.9 49 182-230 148-206 (596)
395 cd02029 PRK_like Phosphoribulo 92.7 0.11 2.5E-06 49.6 3.7 25 209-233 1-25 (277)
396 cd02034 CooC The accessory pro 92.7 0.15 3.2E-06 42.5 4.0 25 210-234 2-26 (116)
397 PF13245 AAA_19: Part of AAA d 92.7 0.11 2.5E-06 39.6 3.0 22 207-228 10-31 (76)
398 TIGR01650 PD_CobS cobaltochela 92.7 0.17 3.7E-06 49.9 4.9 43 186-232 47-89 (327)
399 COG1100 GTPase SAR1 and relate 92.7 0.07 1.5E-06 49.4 2.2 23 208-230 6-28 (219)
400 TIGR00764 lon_rel lon-related 92.7 0.13 2.7E-06 55.6 4.4 55 184-242 18-73 (608)
401 PRK10867 signal recognition pa 92.6 0.21 4.6E-06 51.4 5.8 29 206-234 99-127 (433)
402 PRK14528 adenylate kinase; Pro 92.6 0.099 2.1E-06 47.5 3.1 24 208-231 2-25 (186)
403 PRK00698 tmk thymidylate kinas 92.6 0.11 2.3E-06 47.7 3.3 25 208-232 4-28 (205)
404 COG0194 Gmk Guanylate kinase [ 92.6 0.11 2.3E-06 46.7 3.0 25 207-231 4-28 (191)
405 TIGR00382 clpX endopeptidase C 92.6 0.14 3.1E-06 52.3 4.4 25 208-232 117-141 (413)
406 COG0378 HypB Ni2+-binding GTPa 92.5 0.14 2.9E-06 46.3 3.7 34 207-240 13-46 (202)
407 PRK11034 clpA ATP-dependent Cl 92.5 0.15 3.3E-06 56.3 4.8 49 184-232 458-513 (758)
408 TIGR01817 nifA Nif-specific re 92.5 0.12 2.6E-06 55.1 4.0 49 182-230 194-242 (534)
409 TIGR01287 nifH nitrogenase iro 92.5 0.094 2E-06 50.7 2.9 26 208-233 1-26 (275)
410 PRK14722 flhF flagellar biosyn 92.5 0.14 3E-06 51.6 4.2 28 207-234 137-164 (374)
411 PRK07429 phosphoribulokinase; 92.5 0.16 3.4E-06 50.5 4.5 30 205-234 6-35 (327)
412 smart00173 RAS Ras subfamily o 92.5 0.092 2E-06 46.0 2.6 22 209-230 2-23 (164)
413 TIGR02655 circ_KaiC circadian 92.5 0.19 4.1E-06 52.9 5.3 36 195-230 9-44 (484)
414 PF05621 TniB: Bacterial TniB 92.4 0.16 3.4E-06 49.3 4.3 52 184-235 34-89 (302)
415 COG0003 ArsA Predicted ATPase 92.4 0.15 3.3E-06 50.3 4.3 34 207-240 2-35 (322)
416 KOG0733 Nuclear AAA ATPase (VC 92.4 0.082 1.8E-06 55.4 2.5 110 206-317 544-692 (802)
417 cd04119 RJL RJL (RabJ-Like) su 92.4 0.088 1.9E-06 46.1 2.4 21 210-230 3-23 (168)
418 PF01926 MMR_HSR1: 50S ribosom 92.4 0.086 1.9E-06 43.6 2.2 20 210-229 2-21 (116)
419 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.4 0.093 2E-06 48.8 2.7 25 207-231 30-54 (218)
420 PRK13657 cyclic beta-1,2-gluca 92.4 0.16 3.5E-06 54.9 4.9 23 207-229 361-383 (588)
421 PHA02774 E1; Provisional 92.4 0.22 4.8E-06 52.5 5.5 40 192-232 420-459 (613)
422 TIGR00017 cmk cytidylate kinas 92.4 0.11 2.4E-06 48.5 3.1 25 208-232 3-27 (217)
423 COG1224 TIP49 DNA helicase TIP 92.4 0.25 5.5E-06 48.6 5.6 53 182-234 37-92 (450)
424 COG2204 AtoC Response regulato 92.3 2.8 6E-05 43.4 13.4 49 182-230 139-187 (464)
425 PRK13765 ATP-dependent proteas 92.3 0.13 2.8E-06 55.5 4.0 56 184-243 31-87 (637)
426 TIGR02030 BchI-ChlI magnesium 92.3 0.17 3.6E-06 50.5 4.5 46 184-231 4-49 (337)
427 cd02117 NifH_like This family 92.3 0.11 2.4E-06 48.1 3.0 26 208-233 1-26 (212)
428 PLN02674 adenylate kinase 92.2 0.19 4.2E-06 47.6 4.6 25 207-231 31-55 (244)
429 cd02026 PRK Phosphoribulokinas 92.2 0.09 1.9E-06 50.9 2.4 25 209-233 1-25 (273)
430 cd03225 ABC_cobalt_CbiO_domain 92.2 0.1 2.2E-06 48.2 2.7 25 207-231 27-51 (211)
431 PF06564 YhjQ: YhjQ protein; 92.2 0.12 2.6E-06 48.8 3.1 27 208-234 2-29 (243)
432 PF13604 AAA_30: AAA domain; P 92.2 0.27 5.8E-06 45.0 5.4 28 207-234 18-45 (196)
433 TIGR00101 ureG urease accessor 92.2 0.17 3.8E-06 46.4 4.1 28 208-235 2-29 (199)
434 PF10662 PduV-EutP: Ethanolami 92.2 0.11 2.3E-06 44.9 2.5 23 208-230 2-24 (143)
435 PRK04220 2-phosphoglycerate ki 92.2 0.12 2.6E-06 50.4 3.1 26 206-231 91-116 (301)
436 cd01862 Rab7 Rab7 subfamily. 92.2 0.096 2.1E-06 46.2 2.3 22 209-230 2-23 (172)
437 cd04138 H_N_K_Ras_like H-Ras/N 92.1 0.11 2.4E-06 45.2 2.6 22 209-230 3-24 (162)
438 PF13086 AAA_11: AAA domain; P 92.1 0.14 3.1E-06 47.5 3.6 36 192-231 6-41 (236)
439 PF07724 AAA_2: AAA domain (Cd 92.1 0.22 4.8E-06 44.5 4.6 26 207-232 3-28 (171)
440 TIGR01166 cbiO cobalt transpor 92.1 0.11 2.4E-06 47.2 2.7 25 207-231 18-42 (190)
441 PRK14730 coaE dephospho-CoA ki 92.1 0.12 2.6E-06 47.3 3.0 23 208-230 2-24 (195)
442 PRK12723 flagellar biosynthesi 92.0 0.2 4.3E-06 50.9 4.7 27 206-232 173-199 (388)
443 TIGR00960 3a0501s02 Type II (G 92.0 0.11 2.4E-06 48.3 2.6 34 207-241 29-62 (216)
444 KOG3354 Gluconate kinase [Carb 92.0 0.14 2.9E-06 44.4 2.9 28 208-235 13-40 (191)
445 PRK12726 flagellar biosynthesi 92.0 0.2 4.2E-06 50.4 4.5 28 206-233 205-232 (407)
446 COG0468 RecA RecA/RadA recombi 92.0 0.27 5.9E-06 47.5 5.3 50 196-245 49-98 (279)
447 cd03229 ABC_Class3 This class 92.0 0.12 2.6E-06 46.5 2.7 34 207-241 26-59 (178)
448 cd03297 ABC_ModC_molybdenum_tr 91.9 0.13 2.7E-06 47.8 2.9 26 205-231 22-47 (214)
449 COG1116 TauB ABC-type nitrate/ 91.9 0.12 2.6E-06 48.5 2.7 23 207-229 29-51 (248)
450 PRK13230 nitrogenase reductase 91.9 0.13 2.9E-06 49.8 3.2 26 208-233 2-27 (279)
451 PRK14494 putative molybdopteri 91.9 0.15 3.3E-06 47.7 3.4 27 208-234 2-28 (229)
452 cd03222 ABC_RNaseL_inhibitor T 91.9 0.13 2.8E-06 46.3 2.9 25 207-231 25-49 (177)
453 PRK06851 hypothetical protein; 91.9 0.17 3.6E-06 50.9 3.9 41 206-246 29-70 (367)
454 cd04163 Era Era subfamily. Er 91.8 0.13 2.9E-06 44.6 2.8 23 207-229 3-25 (168)
455 cd04113 Rab4 Rab4 subfamily. 91.8 0.12 2.6E-06 45.2 2.5 21 210-230 3-23 (161)
456 PRK11174 cysteine/glutathione 91.8 0.23 5.1E-06 53.6 5.3 26 206-231 375-400 (588)
457 PRK13541 cytochrome c biogenes 91.8 0.12 2.7E-06 47.1 2.7 25 207-231 26-50 (195)
458 COG3854 SpoIIIAA ncharacterize 91.8 0.36 7.7E-06 44.8 5.5 27 208-234 138-164 (308)
459 TIGR00231 small_GTP small GTP- 91.8 0.12 2.6E-06 44.2 2.5 22 209-230 3-24 (161)
460 PRK12727 flagellar biosynthesi 91.8 0.35 7.6E-06 50.7 6.2 27 207-233 350-376 (559)
461 cd03269 ABC_putative_ATPase Th 91.8 0.12 2.7E-06 47.7 2.7 34 207-241 26-59 (210)
462 TIGR02673 FtsE cell division A 91.8 0.12 2.7E-06 47.8 2.7 34 207-241 28-61 (214)
463 TIGR03596 GTPase_YlqF ribosome 91.8 2.2 4.8E-05 41.3 11.6 23 207-229 118-140 (276)
464 cd04155 Arl3 Arl3 subfamily. 91.8 0.11 2.4E-06 46.1 2.2 24 207-230 14-37 (173)
465 cd03261 ABC_Org_Solvent_Resist 91.8 0.12 2.6E-06 48.7 2.7 25 207-231 26-50 (235)
466 PRK06851 hypothetical protein; 91.8 0.31 6.7E-06 49.0 5.6 38 207-244 214-252 (367)
467 KOG0738 AAA+-type ATPase [Post 91.7 0.24 5.3E-06 49.3 4.7 69 160-232 192-270 (491)
468 smart00175 RAB Rab subfamily o 91.7 0.11 2.4E-06 45.3 2.2 21 210-230 3-23 (164)
469 TIGR01618 phage_P_loop phage n 91.7 0.1 2.2E-06 48.6 2.1 22 207-228 12-33 (220)
470 cd03259 ABC_Carb_Solutes_like 91.7 0.13 2.8E-06 47.7 2.7 25 207-231 26-50 (213)
471 cd01673 dNK Deoxyribonucleosid 91.7 0.12 2.6E-06 47.0 2.5 22 209-230 1-22 (193)
472 cd03256 ABC_PhnC_transporter A 91.7 0.13 2.7E-06 48.7 2.7 25 207-231 27-51 (241)
473 CHL00081 chlI Mg-protoporyphyr 91.7 0.19 4.2E-06 50.2 4.0 48 182-231 15-62 (350)
474 cd04124 RabL2 RabL2 subfamily. 91.6 0.13 2.8E-06 45.2 2.6 21 210-230 3-23 (161)
475 PRK10646 ADP-binding protein; 91.6 0.24 5.3E-06 43.3 4.2 40 192-231 13-52 (153)
476 TIGR02315 ABC_phnC phosphonate 91.6 0.13 2.8E-06 48.7 2.7 34 207-241 28-61 (243)
477 cd04136 Rap_like Rap-like subf 91.6 0.13 2.9E-06 44.8 2.6 22 209-230 3-24 (163)
478 cd03260 ABC_PstB_phosphate_tra 91.6 0.13 2.9E-06 48.1 2.7 25 207-231 26-50 (227)
479 cd03263 ABC_subfamily_A The AB 91.6 0.13 2.9E-06 47.8 2.7 25 207-231 28-52 (220)
480 PLN03046 D-glycerate 3-kinase; 91.6 0.18 3.8E-06 51.3 3.6 27 206-232 211-237 (460)
481 cd03293 ABC_NrtD_SsuB_transpor 91.6 0.13 2.9E-06 47.8 2.7 25 207-231 30-54 (220)
482 cd00876 Ras Ras family. The R 91.5 0.13 2.9E-06 44.5 2.5 21 210-230 2-22 (160)
483 PRK14526 adenylate kinase; Pro 91.5 0.14 3.1E-06 47.5 2.8 22 210-231 3-24 (211)
484 PF00071 Ras: Ras family; Int 91.5 0.13 2.9E-06 44.9 2.5 21 210-230 2-22 (162)
485 cd03235 ABC_Metallic_Cations A 91.5 0.12 2.7E-06 47.8 2.4 25 207-231 25-49 (213)
486 cd03292 ABC_FtsE_transporter F 91.5 0.14 3E-06 47.5 2.7 25 207-231 27-51 (214)
487 cd03264 ABC_drug_resistance_li 91.5 0.12 2.7E-06 47.7 2.4 32 209-241 27-58 (211)
488 cd02040 NifH NifH gene encodes 91.5 0.15 3.2E-06 49.0 3.0 26 208-233 2-27 (270)
489 PRK10584 putative ABC transpor 91.5 0.14 3E-06 48.0 2.7 25 207-231 36-60 (228)
490 cd00154 Rab Rab family. Rab G 91.5 0.14 3E-06 44.0 2.6 21 210-230 3-23 (159)
491 TIGR02770 nickel_nikD nickel i 91.4 0.17 3.6E-06 47.6 3.2 26 207-232 12-37 (230)
492 PRK13407 bchI magnesium chelat 91.4 0.2 4.3E-06 49.9 3.8 47 183-231 7-53 (334)
493 PF02367 UPF0079: Uncharacteri 91.4 0.18 4E-06 42.3 3.1 26 206-231 14-39 (123)
494 TIGR02236 recomb_radA DNA repa 91.4 0.23 5E-06 49.0 4.3 49 195-243 83-137 (310)
495 cd03265 ABC_DrrA DrrA is the A 91.4 0.14 3.1E-06 47.6 2.7 34 207-241 26-59 (220)
496 cd01864 Rab19 Rab19 subfamily. 91.4 0.14 3E-06 45.0 2.5 22 208-229 4-25 (165)
497 PRK14489 putative bifunctional 91.4 0.25 5.3E-06 50.0 4.6 32 206-237 204-236 (366)
498 TIGR03864 PQQ_ABC_ATP ABC tran 91.4 0.14 3.1E-06 48.2 2.7 34 207-241 27-60 (236)
499 cd04137 RheB Rheb (Ras Homolog 91.4 0.16 3.5E-06 45.4 2.9 22 208-229 2-23 (180)
500 cd03296 ABC_CysA_sulfate_impor 91.4 0.14 3.1E-06 48.3 2.7 34 207-241 28-61 (239)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.4e-88 Score=767.20 Aligned_cols=465 Identities=41% Similarity=0.692 Sum_probs=424.9
Q ss_pred CCCC-CCCCCCceeEEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCccc
Q 041795 1 MAST-SFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYAS 79 (471)
Q Consensus 1 ~~~~-~~~~~~~~dvFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~ 79 (471)
|++| |+++.++|||||||||+|+|++|++||+++|.++||.+|+|+ ++++|+.|.+++.+||++|+++|||||++|++
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~ 79 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYAS 79 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence 6665 556889999999999999999999999999999999999988 79999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhcCCCeEEeEEeecCCCcccccCCchHHHHHHHHhhh-HHHHHHHHHHHhhccccCCCCCCCchh
Q 041795 80 SKWCLHELVKILECKSTNGQIVVPVFYHVDPSDVRKQTGSFRDAFVKHKKQM-AEKVQKWRDALTEASNLSGWNSMTIRS 158 (471)
Q Consensus 80 S~wc~~El~~~~~~~~~~~~~viPif~~v~ps~vr~q~~~~~~~f~~~~~~~-~~~v~~w~~al~~~~~~~g~~~~~~~~ 158 (471)
|.||++||++|++|+++.++.|+||||+|+|++||+|+|.||++|.+++.+. .+++++||+||+++++++|+++..+..
T Consensus 80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~ 159 (1153)
T PLN03210 80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPN 159 (1153)
T ss_pred chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCC
Confidence 9999999999999999999999999999999999999999999999988764 456999999999999999999998888
Q ss_pred hhHHHHHHHHhhhhcccccccccCCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccce
Q 041795 159 EAELVDVIVKDILKKLENITVSTNFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN 238 (471)
Q Consensus 159 e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 238 (471)
|+++|++|+++|+.++...++. +.+++|||++++++|..+|..+.+++++|+|+||||+||||||+++|+++..+|++.
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~-~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~ 238 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSN-DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS 238 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCc-ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence 9999999999999999877766 778999999999999999987777899999999999999999999999999999999
Q ss_pred Eeeehh-----hh-----------------------hhhc---------------------CcccccCCHhhHHHHhcCC
Q 041795 239 CFLGNV-----RE-----------------------ESEK---------------------GVLDDVNKIGQLQYLTCGL 269 (471)
Q Consensus 239 ~~~~~~-----~~-----------------------~~~~---------------------~VLDdv~~~~~~~~l~~~~ 269 (471)
+|+... .. .... -||||||+..+|+.+....
T Consensus 239 vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~ 318 (1153)
T PLN03210 239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQT 318 (1153)
T ss_pred EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhC
Confidence 887531 00 0000 0899999999999999888
Q ss_pred CCCCCCcEEEEEeCChhhhhhhCcCCCceEEeCCCCHHHHHHHHHhccccCCCCCchHHHHHHHH----------HHHHh
Q 041795 270 DRFGPGSRIIITTRDKWILDKFGVHDTNVYEVNGLRYHEALELFCNCAFKENHCPSGFLASSKRV----------LKVLG 339 (471)
Q Consensus 270 ~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i----------l~~lg 339 (471)
.++++||+||||||++.++..+++ ..+|+++.|+.++|++||+++||++..+++++.++++++ ++++|
T Consensus 319 ~~~~~GsrIIiTTrd~~vl~~~~~--~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlg 396 (1153)
T PLN03210 319 QWFGSGSRIIVITKDKHFLRAHGI--DHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLG 396 (1153)
T ss_pred ccCCCCcEEEEEeCcHHHHHhcCC--CeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 889999999999999999988776 789999999999999999999998877777888888877 89999
Q ss_pred hhhcCCCHHHHHHHHHHhcCCCCCchHhHHHhhccCCCh-hHHHHHcccccccCCCCHHHHHHhhcc--cCccchHHHHh
Q 041795 340 SFFHRKSKLDWEKALENISRISDPDIYDVLKISYNDLSL-EEKSIFLDIACFFAGEEKDYVTRMLDP--NFPHNGLNILI 416 (471)
Q Consensus 340 ~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~-~~k~~fl~ls~Fp~~~~~~~l~~lw~~--~~~~~~l~~L~ 416 (471)
++|++++..+|+.++++++...+.+|..+|++||++|++ .+|.||++|||||.+.+.+.+..++.. +.+..+++.|+
T Consensus 397 s~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~ 476 (1153)
T PLN03210 397 SYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLV 476 (1153)
T ss_pred HHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHH
Confidence 999999999999999999888888899999999999987 599999999999999988887776655 56777899999
Q ss_pred hCCCeeecCCCeEEecHHHHHHHHHHHHhhccCCCCCcccccccchHHHHhhcCC
Q 041795 417 AKSLVTVSNDNKIQMHDLLQEMGREVVRQECIKEPGKRSRLWYHEDVYHVLKKNK 471 (471)
Q Consensus 417 ~~sLi~~~~~~~~~mHdlv~~~a~~i~~~e~~~~~~~~~rl~~~~d~~~~l~~~~ 471 (471)
++|||+++ .+++.||||+|+||++++++++ ..||+++|||+++|+++++.+|+
T Consensus 477 ~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~ 529 (1153)
T PLN03210 477 DKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNT 529 (1153)
T ss_pred hcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCc
Confidence 99999997 5789999999999999999997 78999999999999999998864
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=301.71 Aligned_cols=161 Identities=31% Similarity=0.510 Sum_probs=146.0
Q ss_pred CCCCCCCCCceeEEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccch
Q 041795 2 ASTSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSK 81 (471)
Q Consensus 2 ~~~~~~~~~~~dvFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~ 81 (471)
.|+|+++..+|||||||+|+|+|++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|||++|++|.
T Consensus 17 ~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~ 96 (187)
T PLN03194 17 YPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESY 96 (187)
T ss_pred cccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccch
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcCCCeEEeEEeecCCCccccc-CCchHHHHHHHHhhhHHHHHHHHHHHhhccccCCCCCCC-chhh
Q 041795 82 WCLHELVKILECKSTNGQIVVPVFYHVDPSDVRKQ-TGSFRDAFVKHKKQMAEKVQKWRDALTEASNLSGWNSMT-IRSE 159 (471)
Q Consensus 82 wc~~El~~~~~~~~~~~~~viPif~~v~ps~vr~q-~~~~~~~f~~~~~~~~~~v~~w~~al~~~~~~~g~~~~~-~~~e 159 (471)
||++||++|+++. ..|+||||+|+|++||+| .|.. ..+++++||+||.+++++.|+.+.. ...|
T Consensus 97 WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e 162 (187)
T PLN03194 97 FCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNW 162 (187)
T ss_pred hHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCH
Confidence 9999999999864 479999999999999997 4432 2467999999999999999987754 3459
Q ss_pred hHHHHHHHHhhhhcccc
Q 041795 160 AELVDVIVKDILKKLEN 176 (471)
Q Consensus 160 ~~~i~~i~~~v~~~l~~ 176 (471)
++++++|++.|.+++-.
T Consensus 163 ~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 163 SEVVTMASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999877644
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-40 Score=362.51 Aligned_cols=254 Identities=31% Similarity=0.425 Sum_probs=222.4
Q ss_pred cccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh---hhccccceEeeehhhhhhhcC------------
Q 041795 187 VGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL---IYKEFEGNCFLGNVREESEKG------------ 251 (471)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~------------ 251 (471)
||.+..++.+.+.|..++. .+++|+||||+||||||+.++|+ +..+|+..+|+..++++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 9999999999999985543 89999999999999999999997 568899999998765444321
Q ss_pred ---------------------------cccccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhhh-hCcCCCceEEeCC
Q 041795 252 ---------------------------VLDDVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILDK-FGVHDTNVYEVNG 303 (471)
Q Consensus 252 ---------------------------VLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~~~l~~ 303 (471)
||||||+...|+.+..+++....||+|++|||++.|+.. +++ ...++++.
T Consensus 239 ~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~--~~~~~v~~ 316 (889)
T KOG4658|consen 239 DEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV--DYPIEVEC 316 (889)
T ss_pred CcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC--Cccccccc
Confidence 999999999999999999988889999999999999998 777 78999999
Q ss_pred CCHHHHHHHHHhccccCC-CCCchHHHHHHHH----------HHHHhhhhcCC-CHHHHHHHHHHhcCC-----C--CCc
Q 041795 304 LRYHEALELFCNCAFKEN-HCPSGFLASSKRV----------LKVLGSFFHRK-SKLDWEKALENISRI-----S--DPD 364 (471)
Q Consensus 304 L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~i----------l~~lg~~L~~~-~~~~w~~~l~~l~~~-----~--~~~ 364 (471)
|+.+|||.||.+.+|... ...+.+.++++++ ++++|+.|+.| +..+|+.+.+.+.+. + .+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 999999999999998763 3334577777777 88999999987 688999999988664 1 246
Q ss_pred hHhHHHhhccCCChhHHHHHcccccccCCC--CHHHHHHhhcc--c------------CccchHHHHhhCCCeeecCC--
Q 041795 365 IYDVLKISYNDLSLEEKSIFLDIACFFAGE--EKDYVTRMLDP--N------------FPHNGLNILIAKSLVTVSND-- 426 (471)
Q Consensus 365 i~~~l~~Sy~~L~~~~k~~fl~ls~Fp~~~--~~~~l~~lw~~--~------------~~~~~l~~L~~~sLi~~~~~-- 426 (471)
+..+|++|||.||++.|.||+|||+||+|+ +.+.|+.+|+| | .++.++++|+++||+.....
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~ 476 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEG 476 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccc
Confidence 899999999999999999999999999997 78999999999 2 25678999999999998652
Q ss_pred --CeEEecHHHHHHHHHHHH
Q 041795 427 --NKIQMHDLLQEMGREVVR 444 (471)
Q Consensus 427 --~~~~mHdlv~~~a~~i~~ 444 (471)
..|+|||+|||||..+++
T Consensus 477 ~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 477 RKETVKMHDVVREMALWIAS 496 (889)
T ss_pred ceeEEEeeHHHHHHHHHHhc
Confidence 469999999999999999
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=2.2e-32 Score=267.35 Aligned_cols=216 Identities=32% Similarity=0.467 Sum_probs=166.1
Q ss_pred cchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh--hhccccceEeeehhhhhhhc----------------
Q 041795 189 LNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL--IYKEFEGNCFLGNVREESEK---------------- 250 (471)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~---------------- 250 (471)
||.++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+.........
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 788999999999876678999999999999999999999998 88999999998633211100
Q ss_pred -----C-------------------cccccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhhhhCcCCCceEEeCCCCH
Q 041795 251 -----G-------------------VLDDVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILDKFGVHDTNVYEVNGLRY 306 (471)
Q Consensus 251 -----~-------------------VLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~ 306 (471)
. ||||||+...|+.+...++.++.||+||||||+..++..++.. ...|+|++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEECSS--H
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 0 9999999999998888877777899999999999988766421 46899999999
Q ss_pred HHHHHHHHhccccCC-C----CCchHHHHHHHH------HHHHhhhhcCC-CHHHHHHHHHHhcCCC------CCchHhH
Q 041795 307 HEALELFCNCAFKEN-H----CPSGFLASSKRV------LKVLGSFFHRK-SKLDWEKALENISRIS------DPDIYDV 368 (471)
Q Consensus 307 ~ea~~Lf~~~a~~~~-~----~~~~~~~l~~~i------l~~lg~~L~~~-~~~~w~~~l~~l~~~~------~~~i~~~ 368 (471)
+||++||.+.++... . ..+...++++.+ ++++|++|+.+ +..+|..+++.+.... ...+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999987544 1 123334555544 88999999553 6788999998765432 3569999
Q ss_pred HHhhccCCChhHHHHHcccccccCCC--CHHHHHHhhcc
Q 041795 369 LKISYNDLSLEEKSIFLDIACFFAGE--EKDYVTRMLDP 405 (471)
Q Consensus 369 l~~Sy~~L~~~~k~~fl~ls~Fp~~~--~~~~l~~lw~~ 405 (471)
+..||+.||++.|+||++||+||.+. +.+.|+++|.+
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 99999999999999999999999986 68999999987
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.83 E-value=3.5e-22 Score=174.12 Aligned_cols=129 Identities=34% Similarity=0.587 Sum_probs=109.2
Q ss_pred EEEcccccccCcchHHHHHHHHHhC--CcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccchhhHHHHHHHH
Q 041795 14 VSLSFRGGDTRDNFTSHLYAALCRK--KIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSKWCLHELVKIL 91 (471)
Q Consensus 14 vFiS~~~~D~~~~f~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~ 91 (471)
|||||++.|.+..|+++|..+|++. |+++|++++|+.+|..+.++|.++|++|+++|+|||++|+.|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999444555999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--CeEEeEEeecCCCccc-ccCCchHHHHHHHHhhhH-----HHHHHHHHHH
Q 041795 92 ECKSTNG--QIVVPVFYHVDPSDVR-KQTGSFRDAFVKHKKQMA-----EKVQKWRDAL 142 (471)
Q Consensus 92 ~~~~~~~--~~viPif~~v~ps~vr-~q~~~~~~~f~~~~~~~~-----~~v~~w~~al 142 (471)
++....+ ..|+|+|+++.+++++ .+.+.|...|........ .....|++++
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~ 139 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLR 139 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHh
Confidence 9996644 8999999999999999 688888877765443222 2477888765
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.83 E-value=1.2e-20 Score=164.11 Aligned_cols=134 Identities=41% Similarity=0.659 Sum_probs=112.1
Q ss_pred ceeEEEcccc-cccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccchhhHHHHHH
Q 041795 11 KYDVSLSFRG-GDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSKWCLHELVK 89 (471)
Q Consensus 11 ~~dvFiS~~~-~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~ 89 (471)
+|||||||++ ++....|+.+|...|...|+.+|.|++. +|.....+|.++|++|+++|+|+||+|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 4556889999999999999999999753 343333499999999999999999999999999999999
Q ss_pred HHHhhhc-CCCeEEeEEeecCCCcccccCCchHHHHHHHHhhhHHHH--HHHHHHHhhcc
Q 041795 90 ILECKST-NGQIVVPVFYHVDPSDVRKQTGSFRDAFVKHKKQMAEKV--QKWRDALTEAS 146 (471)
Q Consensus 90 ~~~~~~~-~~~~viPif~~v~ps~vr~q~~~~~~~f~~~~~~~~~~v--~~w~~al~~~~ 146 (471)
++++... ...+||||+++..|..+..+.+.++..+..+..+..+.. ..|++.+..++
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 9988754 668999999999998899999999999887644443333 58888776654
No 7
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.65 E-value=6.9e-17 Score=132.54 Aligned_cols=91 Identities=30% Similarity=0.563 Sum_probs=77.1
Q ss_pred EEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccchhhHHHHHHHHHh
Q 041795 14 VSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSKWCLHELVKILEC 93 (471)
Q Consensus 14 vFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~ 93 (471)
|||||+++| ..++.+|.+.|+.+|+++|+|. ++.+|+.+.+.|.++|++|+.+|+++|++|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 899999999 6699999999999999999997 999999999999999999999999999999999999999998843
Q ss_pred hhcCCCeEEeEEeecCCCcc
Q 041795 94 KSTNGQIVVPVFYHVDPSDV 113 (471)
Q Consensus 94 ~~~~~~~viPif~~v~ps~v 113 (471)
.+..|+||. +++.++
T Consensus 77 ---~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 77 ---RGKPIIPVR--LDPCEL 91 (102)
T ss_dssp ---TSESEEEEE--CSGGGS
T ss_pred ---CCCEEEEEE--ECCcCC
Confidence 445899998 444443
No 8
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.05 E-value=8e-09 Score=116.86 Aligned_cols=252 Identities=16% Similarity=0.168 Sum_probs=151.6
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehh-----------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNV----------------- 244 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~----------------- 244 (471)
....++-|..-++.|.+ ....+++.|.|++|.||||++..+.... +.++|+.--
T Consensus 12 ~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCcccCCHHHHHHHHHHHH
Confidence 44567777755544432 3357899999999999999999987542 246675310
Q ss_pred h----h---hhh-------------------------c----CcccccCCH---hhHHHHhcCCCCCCCCcEEEEEeCCh
Q 041795 245 R----E---ESE-------------------------K----GVLDDVNKI---GQLQYLTCGLDRFGPGSRIIITTRDK 285 (471)
Q Consensus 245 ~----~---~~~-------------------------~----~VLDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~ 285 (471)
. . ... . -||||+... ...+.+...+....++.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 0 0 000 0 089998542 22222222223334677899999984
Q ss_pred hhhh--hhCcCCCceEEeC----CCCHHHHHHHHHhccccCCCCCchHHHHHHHH------HHHHhhhhcCCCHHHHHHH
Q 041795 286 WILD--KFGVHDTNVYEVN----GLRYHEALELFCNCAFKENHCPSGFLASSKRV------LKVLGSFFHRKSKLDWEKA 353 (471)
Q Consensus 286 ~v~~--~~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i------l~~lg~~L~~~~~~~w~~~ 353 (471)
.-.. .... .....++. +|+.+|+..||.... +..-+++....+.+.. +..++..+...... -...
T Consensus 163 ~~~~~~~l~~-~~~~~~l~~~~l~f~~~e~~~ll~~~~-~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~ 239 (903)
T PRK04841 163 PPLGIANLRV-RDQLLEIGSQQLAFDHQEAQQFFDQRL-SSPIEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDS 239 (903)
T ss_pred CCCchHhHHh-cCcceecCHHhCCCCHHHHHHHHHhcc-CCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhh
Confidence 2111 1111 12345666 999999999998654 2222333344444433 44444333322110 0111
Q ss_pred HHHhcCCCCCchHhHHHhh-ccCCChhHHHHHcccccccCCCCHHHHHHhhcccCccchHHHHhhCCCeee-cC-C-CeE
Q 041795 354 LENISRISDPDIYDVLKIS-YNDLSLEEKSIFLDIACFFAGEEKDYVTRMLDPNFPHNGLNILIAKSLVTV-SN-D-NKI 429 (471)
Q Consensus 354 l~~l~~~~~~~i~~~l~~S-y~~L~~~~k~~fl~ls~Fp~~~~~~~l~~lw~~~~~~~~l~~L~~~sLi~~-~~-~-~~~ 429 (471)
...+...+...+...+.-. ++.||++.+..++.+|+++ .++.+.+..+.....+...+..|.+.+++.. .+ + ..|
T Consensus 240 ~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~y 318 (903)
T PRK04841 240 ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWF 318 (903)
T ss_pred hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEE
Confidence 1122111234466665444 8899999999999999987 6666666666554556778999999999653 22 2 369
Q ss_pred EecHHHHHHHHHHHHhh
Q 041795 430 QMHDLLQEMGREVVRQE 446 (471)
Q Consensus 430 ~mHdlv~~~a~~i~~~e 446 (471)
.+|+|++++.++....+
T Consensus 319 r~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 319 RYHPLFASFLRHRCQWE 335 (903)
T ss_pred ehhHHHHHHHHHHHHhc
Confidence 99999999999887544
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=1.9e-08 Score=99.18 Aligned_cols=241 Identities=14% Similarity=0.119 Sum_probs=134.7
Q ss_pred CCccccchhHHHHHHhhhcC---CCCceEEEEeccCcchhhhHHHHHHHhhhccccceE--eee---hhhhhh---hc-C
Q 041795 184 DGLVGLNSRIEKIKSLLCIG---RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC--FLG---NVREES---EK-G 251 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~--~~~---~~~~~~---~~-~ 251 (471)
..|+|+++.+++|..++... ......+.++|++|+|||+||+.+++.....+.... ... ...... .. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 83 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGD 83 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCC
Confidence 46999999999999888631 233567889999999999999999998654432110 000 111110 01 1
Q ss_pred --cccccCCH--hhHHHHhcCCC-------------------CCCCCcEEEEEeCChhhhhhhCcCCCceEEeCCCCHHH
Q 041795 252 --VLDDVNKI--GQLQYLTCGLD-------------------RFGPGSRIIITTRDKWILDKFGVHDTNVYEVNGLRYHE 308 (471)
Q Consensus 252 --VLDdv~~~--~~~~~l~~~~~-------------------~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~e 308 (471)
++|++... ...+.|...+. ...+.+-|..||+...+.......-...+++++++.++
T Consensus 84 vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e 163 (305)
T TIGR00635 84 VLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEE 163 (305)
T ss_pred EEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHH
Confidence 78888632 22222321111 01124555567776443332110003468999999999
Q ss_pred HHHHHHhccccCC-CCCchHHHHHHHHHHHHhhhhcCC-C--HHHHHHHHHHhcCCC-C----CchHhHHHhhccCCChh
Q 041795 309 ALELFCNCAFKEN-HCPSGFLASSKRVLKVLGSFFHRK-S--KLDWEKALENISRIS-D----PDIYDVLKISYNDLSLE 379 (471)
Q Consensus 309 a~~Lf~~~a~~~~-~~~~~~~~l~~~il~~lg~~L~~~-~--~~~w~~~l~~l~~~~-~----~~i~~~l~~Sy~~L~~~ 379 (471)
..+++.+.+.... ..+ .+....+++..++..+.- . ..-|... ....... . ......+..+|..|+..
T Consensus 164 ~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~a-~~~~~~~it~~~v~~~l~~l~~~~~~l~~~ 239 (305)
T TIGR00635 164 LAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRDFA-QVRGQKIINRDIALKALEMLMIDELGLDEI 239 (305)
T ss_pred HHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHHHH-HHcCCCCcCHHHHHHHHHHhCCCCCCCCHH
Confidence 9999988764322 111 223333444444433210 0 0111110 0011110 0 12233356678899998
Q ss_pred HHHHHc-ccccccCC-CCHHHHHHhhcc--cCccchHH-HHhhCCCeeecCCCe
Q 041795 380 EKSIFL-DIACFFAG-EEKDYVTRMLDP--NFPHNGLN-ILIAKSLVTVSNDNK 428 (471)
Q Consensus 380 ~k~~fl-~ls~Fp~~-~~~~~l~~lw~~--~~~~~~l~-~L~~~sLi~~~~~~~ 428 (471)
++..+. .++.+..+ ...+.+...+.. ......++ .|++++||.....|+
T Consensus 240 ~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 240 DRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 887666 55666544 577888887766 55666688 699999998654443
No 10
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.85 E-value=9.3e-09 Score=101.33 Aligned_cols=92 Identities=26% Similarity=0.453 Sum_probs=77.9
Q ss_pred CCCceeEEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCccc--------
Q 041795 8 SSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYAS-------- 79 (471)
Q Consensus 8 ~~~~~dvFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~-------- 79 (471)
...+.||||||+.. +..+.++.|.-.|.-+|++||+|-+.+..|. +.+.+.+.|..++.+|+|+|||.+.
T Consensus 609 ~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 34679999999876 5677999999999999999999998898887 6799999999999999999998653
Q ss_pred chhhHHHHHHHHHhhhcCCCeEEeEE
Q 041795 80 SKWCLHELVKILECKSTNGQIVVPVF 105 (471)
Q Consensus 80 S~wc~~El~~~~~~~~~~~~~viPif 105 (471)
-.|...|+..+++|++ .|+|||
T Consensus 687 eDWVHKEl~~Afe~~K----NIiPI~ 708 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQK----NIIPIF 708 (832)
T ss_pred HHHHHHHHHHHHHhcC----Ceeeee
Confidence 3466667777776664 599998
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.85 E-value=1.8e-08 Score=100.38 Aligned_cols=243 Identities=16% Similarity=0.116 Sum_probs=137.1
Q ss_pred CCCCccccchhHHHHHHhhhc---CCCCceEEEEeccCcchhhhHHHHHHHhhhccccce--Eeeehhh---hhh---hc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI---GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN--CFLGNVR---EES---EK 250 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~--~~~~~~~---~~~---~~ 250 (471)
...+|+|++..++.+..++.. .......+.|+|++|+|||+||+.+++.....+... ..+.... ... ..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~ 102 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEE 102 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhccc
Confidence 446799999999999888763 233466789999999999999999999865433211 1111111 100 01
Q ss_pred C---cccccCCHh--hHHHHhcCCCC-------------------CCCCcEEEEEeCChhhhhhhCcCCCceEEeCCCCH
Q 041795 251 G---VLDDVNKIG--QLQYLTCGLDR-------------------FGPGSRIIITTRDKWILDKFGVHDTNVYEVNGLRY 306 (471)
Q Consensus 251 ~---VLDdv~~~~--~~~~l~~~~~~-------------------~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~ 306 (471)
+ ++|+++... ..+.+...+.. ..+.+-|..||+...+.......-...+++++++.
T Consensus 103 ~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~ 182 (328)
T PRK00080 103 GDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTV 182 (328)
T ss_pred CCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCH
Confidence 1 788886321 22222111100 01234455677754433221100034689999999
Q ss_pred HHHHHHHHhccccCCCCCchHHHHHHHHHHHHhhhhcCC-----CHHHHHHHHHHhcCCCC---CchHhHHHhhccCCCh
Q 041795 307 HEALELFCNCAFKENHCPSGFLASSKRVLKVLGSFFHRK-----SKLDWEKALENISRISD---PDIYDVLKISYNDLSL 378 (471)
Q Consensus 307 ~ea~~Lf~~~a~~~~~~~~~~~~l~~~il~~lg~~L~~~-----~~~~w~~~l~~l~~~~~---~~i~~~l~~Sy~~L~~ 378 (471)
++..+++.+.+-...... -.+....+++..++..+.- ....|.... .-..... ......+...+..|++
T Consensus 183 ~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~ 259 (328)
T PRK00080 183 EELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRVRDFAQVK-GDGVITKEIADKALDMLGVDELGLDE 259 (328)
T ss_pred HHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCH
Confidence 999999998764322111 1223334444444333210 011111110 0000011 1234556777889999
Q ss_pred hHHHHHc-ccccccCC-CCHHHHHHhhcc--cCccchHH-HHhhCCCeeecCCC
Q 041795 379 EEKSIFL-DIACFFAG-EEKDYVTRMLDP--NFPHNGLN-ILIAKSLVTVSNDN 427 (471)
Q Consensus 379 ~~k~~fl-~ls~Fp~~-~~~~~l~~lw~~--~~~~~~l~-~L~~~sLi~~~~~~ 427 (471)
..+..+. .+..|+.+ ...+.+...+.. ...++.++ .|++.+||+....|
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 260 MDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred HHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence 8888775 66677755 477888887766 45566777 99999999865444
No 12
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.56 E-value=1.7e-06 Score=88.52 Aligned_cols=235 Identities=19% Similarity=0.120 Sum_probs=127.0
Q ss_pred CCCCccccchhHHHHHHhhhcC--CCCceEEEEeccCcchhhhHHHHHHHhhhcccc--ceEeeehhh------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIG--RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE--GNCFLGNVR------------ 245 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~------------ 245 (471)
.++.++||++++++|...|... +.....+.|+|.+|+|||++++.+++.+..... ..+++....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 5577999999999999988532 233456789999999999999999988654321 122222100
Q ss_pred -hhh-----------------------hcC-----cccccCCHh------hHHHHhcCCCCCCCCcE--EEEEeCChhhh
Q 041795 246 -EES-----------------------EKG-----VLDDVNKIG------QLQYLTCGLDRFGPGSR--IIITTRDKWIL 288 (471)
Q Consensus 246 -~~~-----------------------~~~-----VLDdv~~~~------~~~~l~~~~~~~~~gs~--IiiTTR~~~v~ 288 (471)
+.. ..+ |||+++... .+..|....... .+++ +|.++.+..+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcchh
Confidence 000 000 789997532 344444332221 2333 56666654433
Q ss_pred hhhC-----cCCCceEEeCCCCHHHHHHHHHhccc---cCCCCC-chHHHHHHHHHHHHhhh------h---------cC
Q 041795 289 DKFG-----VHDTNVYEVNGLRYHEALELFCNCAF---KENHCP-SGFLASSKRVLKVLGSF------F---------HR 344 (471)
Q Consensus 289 ~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~-~~~~~l~~~il~~lg~~------L---------~~ 344 (471)
.... ......+.+++++.++..+++..++- ...... +.+..+++.....-|.. + .+
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 2211 00124679999999999999887652 222222 22222322221101110 0 00
Q ss_pred C---CHHHHHHHHHHhcCCCCCchHhHHHhhccCCChhHHHHHccccccc----CCCCHHHHHHh-------hcc-----
Q 041795 345 K---SKLDWEKALENISRISDPDIYDVLKISYNDLSLEEKSIFLDIACFF----AGEEKDYVTRM-------LDP----- 405 (471)
Q Consensus 345 ~---~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~ls~Fp----~~~~~~~l~~l-------w~~----- 405 (471)
. +......+++.. -.....-.+..||.++|..+..++-.- .......+.+. ...
T Consensus 267 ~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~ 339 (394)
T PRK00411 267 SRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTH 339 (394)
T ss_pred CCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcH
Confidence 0 233333333332 122344567899998888877666332 22333333322 111
Q ss_pred cCccchHHHHhhCCCeeec
Q 041795 406 NFPHNGLNILIAKSLVTVS 424 (471)
Q Consensus 406 ~~~~~~l~~L~~~sLi~~~ 424 (471)
.....+++.|.+.|||...
T Consensus 340 ~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 340 TRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHHhcCCeEEE
Confidence 1123589999999999864
No 13
>PF05729 NACHT: NACHT domain
Probab=98.55 E-value=2.6e-07 Score=81.98 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=68.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc------cceEeeehh--hh---------hhhc--------------------
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF------EGNCFLGNV--RE---------ESEK-------------------- 250 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~--~~---------~~~~-------------------- 250 (471)
|++.|+|.+|+||||+++.++..+.... ...+|+..- .. ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 5789999999999999999998865443 233333210 00 0000
Q ss_pred ----CcccccCCHhh---------HHHHh-cCCCC-CCCCcEEEEEeCChhh---hhhhCcCCCceEEeCCCCHHHHHHH
Q 041795 251 ----GVLDDVNKIGQ---------LQYLT-CGLDR-FGPGSRIIITTRDKWI---LDKFGVHDTNVYEVNGLRYHEALEL 312 (471)
Q Consensus 251 ----~VLDdv~~~~~---------~~~l~-~~~~~-~~~gs~IiiTTR~~~v---~~~~~~~~~~~~~l~~L~~~ea~~L 312 (471)
-|||++++... +..++ ..+.. ..+++++|||+|.... ...... ...+++.+|+.++..++
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ--AQILELEPFSEEDIKQY 158 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC--CcEEEECCCCHHHHHHH
Confidence 07888864321 22222 22221 2468999999998766 223333 46899999999999998
Q ss_pred HHhc
Q 041795 313 FCNC 316 (471)
Q Consensus 313 f~~~ 316 (471)
+.+.
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8764
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=98.52 E-value=4.5e-07 Score=85.53 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=72.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh--hh----hhc------CcccccCCH---hhHH-HHhcCCC
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR--EE----SEK------GVLDDVNKI---GQLQ-YLTCGLD 270 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~--~~----~~~------~VLDdv~~~---~~~~-~l~~~~~ 270 (471)
.+.+.|+|.+|+|||+|++.+++....+.....|+.... .. ... -+|||++.. ..|+ .+...++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n 118 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN 118 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 457899999999999999999998655545556665421 10 000 189999742 3343 2222222
Q ss_pred CC-CCCcEEEEE-eCC---------hhhhhhhCcCCCceEEeCCCCHHHHHHHHHhccccC
Q 041795 271 RF-GPGSRIIIT-TRD---------KWILDKFGVHDTNVYEVNGLRYHEALELFCNCAFKE 320 (471)
Q Consensus 271 ~~-~~gs~IiiT-TR~---------~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 320 (471)
.. ..|+.+||+ +.. +.+...+.. ...+++++++.++.++++.+.+...
T Consensus 119 ~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~--g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 119 RIKEQGKTLLLISADCSPHALSIKLPDLASRLTW--GEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred HHHHcCCcEEEEeCCCChHHccccchhHHHHHhc--CCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 11 235666554 443 355555554 5689999999999999999888643
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.45 E-value=4e-07 Score=85.47 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=36.9
Q ss_pred ccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 186 LVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 799999999999988743 357899999999999999999998763
No 16
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.45 E-value=4.2e-06 Score=89.30 Aligned_cols=252 Identities=17% Similarity=0.196 Sum_probs=141.7
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhhhhc------------
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREESEK------------ 250 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~------------ 250 (471)
..+.|-|..-++.|.+ ..+.+.+.|.-+.|-|||||+.+... ....=..+.|+.-..+....
T Consensus 18 ~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 18 PDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 3556667655544443 34689999999999999999999987 33444556775411110000
Q ss_pred ------C-----------------------------------cccccC---CHhhHHHHhcCCCCCCCCcEEEEEeCChh
Q 041795 251 ------G-----------------------------------VLDDVN---KIGQLQYLTCGLDRFGPGSRIIITTRDKW 286 (471)
Q Consensus 251 ------~-----------------------------------VLDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 286 (471)
+ ||||.. ++..-..+.-.+....++-..|+|||...
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 0 889964 33322222222333457888999999874
Q ss_pred hhhhhCc-CCCceEEeC----CCCHHHHHHHHHhccccCCCCCchHHHHHHHH------HHHHhhhhcC-CCHHHHHHHH
Q 041795 287 ILDKFGV-HDTNVYEVN----GLRYHEALELFCNCAFKENHCPSGFLASSKRV------LKVLGSFFHR-KSKLDWEKAL 354 (471)
Q Consensus 287 v~~~~~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i------l~~lg~~L~~-~~~~~w~~~l 354 (471)
-...... -.+...+++ .++.+|+-++|.... +..-...+...+.... +...+=.+++ .+...- +
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~---~ 247 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG-SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQS---L 247 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC-CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH---h
Confidence 3221110 002233333 489999999888754 1222223444444433 2222222221 121111 1
Q ss_pred HHhcCCCCCchHhH-HHhhccCCChhHHHHHcccccccCCCCHHHHHH-hhcccCccchHHHHhhCCCeee--c-CCCeE
Q 041795 355 ENISRISDPDIYDV-LKISYNDLSLEEKSIFLDIACFFAGEEKDYVTR-MLDPNFPHNGLNILIAKSLVTV--S-NDNKI 429 (471)
Q Consensus 355 ~~l~~~~~~~i~~~-l~~Sy~~L~~~~k~~fl~ls~Fp~~~~~~~l~~-lw~~~~~~~~l~~L~~~sLi~~--~-~~~~~ 429 (471)
..+... ...+.+- ..--++.||++.|..++-+|+++.-- +.|+. +-....+...+++|.+++|+-+ + +++.|
T Consensus 248 ~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~--~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~Wf 324 (894)
T COG2909 248 RGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN--DELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWF 324 (894)
T ss_pred hhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh--HHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCcee
Confidence 111000 0111111 23346889999999999999985321 22222 2222456667999999999874 3 25569
Q ss_pred EecHHHHHHHHHHHHhhc
Q 041795 430 QMHDLLQEMGREVVRQEC 447 (471)
Q Consensus 430 ~mHdlv~~~a~~i~~~e~ 447 (471)
+.|.|+.||-+.--+.+.
T Consensus 325 ryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 325 RYHHLFAEFLRQRLQREL 342 (894)
T ss_pred ehhHHHHHHHHhhhcccc
Confidence 999999999987766653
No 17
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.39 E-value=1.8e-05 Score=80.02 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=42.3
Q ss_pred CCCCccccchhHHHHHHhhhc--CCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI--GRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++.++||++++++|...|.. .+.....+.|+|++|+|||++++.+++.+.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999998863 223456789999999999999999998754
No 18
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.39 E-value=9.1e-07 Score=86.96 Aligned_cols=123 Identities=26% Similarity=0.361 Sum_probs=82.2
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEe----eehhhhhhhc-------C-
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF----LGNVREESEK-------G- 251 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~----~~~~~~~~~~-------~- 251 (471)
.+++|-...+.++.+ .+.+...-+||++|+||||||+.+.......|...-= +..+++.... |
T Consensus 30 ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr 104 (436)
T COG2256 30 EHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGR 104 (436)
T ss_pred HhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCC
Confidence 345555555554443 4457788899999999999999999987777653211 1222222111 1
Q ss_pred ----cccccC--CHhhHHHHhcCCCCCCCCcEEEE--EeCChhhhh---hhCcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 252 ----VLDDVN--KIGQLQYLTCGLDRFGPGSRIII--TTRDKWILD---KFGVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 252 ----VLDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~---~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
++|.|. +..|-+.|++.+. .|.-|+| ||.|+...- .... ..++++++|+.++-..++.+-
T Consensus 105 ~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR--~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 105 RTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSR--ARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred ceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhh--hheeeeecCCHHHHHHHHHHH
Confidence 789995 6667777876654 6777777 787764321 1112 578999999999999998873
No 19
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.27 E-value=3.5e-06 Score=85.25 Aligned_cols=147 Identities=25% Similarity=0.259 Sum_probs=88.0
Q ss_pred CCccccchhHHHHHHhhhcC-----------CCCceEEEEeccCcchhhhHHHHHHHhhhccccceEe-------eeh--
Q 041795 184 DGLVGLNSRIEKIKSLLCIG-----------RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF-------LGN-- 243 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~-------~~~-- 243 (471)
.++.|+++.+++|.+.+... -...+-+.|+|++|+|||+||+.+++.....|-.... +..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~ 201 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGA 201 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHH
Confidence 46899999999998876421 1235569999999999999999999986655422211 000
Q ss_pred --hhhhh---hc-----CcccccCCH----------------hhHHHHhcCCCCC--CCCcEEEEEeCChhhh-----hh
Q 041795 244 --VREES---EK-----GVLDDVNKI----------------GQLQYLTCGLDRF--GPGSRIIITTRDKWIL-----DK 290 (471)
Q Consensus 244 --~~~~~---~~-----~VLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~-----~~ 290 (471)
++... .. -+||+++.. ..+..++..+... ..+.+||.||...... ..
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~ 281 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRP 281 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCc
Confidence 00000 00 178888632 1223333323221 2467788888754322 21
Q ss_pred hCcCCCceEEeCCCCHHHHHHHHHhccccCCCC-CchHHHHHH
Q 041795 291 FGVHDTNVYEVNGLRYHEALELFCNCAFKENHC-PSGFLASSK 332 (471)
Q Consensus 291 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~ 332 (471)
... ...++++..+.++..++|..++.+.... ..++..++.
T Consensus 282 grf--d~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~ 322 (364)
T TIGR01242 282 GRF--DRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK 322 (364)
T ss_pred ccC--ceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 122 4578999999999999998877543322 124444444
No 20
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.24 E-value=2e-06 Score=73.53 Aligned_cols=89 Identities=21% Similarity=0.376 Sum_probs=46.9
Q ss_pred eeEEEcccccccCcchHHHHHHHHHhC-------Ccce-ee---------cCCCCCCCCCCcHHHHHHhhhcceEEEEEc
Q 041795 12 YDVSLSFRGGDTRDNFTSHLYAALCRK-------KIKT-FI---------NGDEIRRGDDISPALFTAIQGSKISVIVLS 74 (471)
Q Consensus 12 ~dvFiS~~~~D~~~~f~~~l~~~L~~~-------g~~~-~~---------d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S 74 (471)
|.|||||++.|... .+..|...+... .+.. |. +..+....+.+...|.++|.+|.++||++|
T Consensus 1 ~~vFIS~~~~d~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDDW-YYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcHH-HHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 57999999999442 677777777763 2221 11 222222344788899999999999999999
Q ss_pred cCcccchhhHHHHHHHHHhhhcCCCeEEeEE
Q 041795 75 KHYASSKWCLHELVKILECKSTNGQIVVPVF 105 (471)
Q Consensus 75 ~~y~~S~wc~~El~~~~~~~~~~~~~viPif 105 (471)
++-..|.|+.+|+..+++ .+..|+.|-
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998876 334566653
No 21
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.20 E-value=6.7e-06 Score=77.24 Aligned_cols=130 Identities=21% Similarity=0.267 Sum_probs=78.3
Q ss_pred CCccc--cchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhh---------hhc--
Q 041795 184 DGLVG--LNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREE---------SEK-- 250 (471)
Q Consensus 184 ~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~---------~~~-- 250 (471)
++|++ ....++.+.+++. ......+.|+|.+|+|||+||+.+++..........++....-. ...
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQAD 92 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCC
Confidence 44552 3446677777654 23467899999999999999999998865443344455422210 011
Q ss_pred -CcccccCCHh---h-HHHHhcCCCC-CCCCcEEEEEeCChh---------hhhhhCcCCCceEEeCCCCHHHHHHHHHh
Q 041795 251 -GVLDDVNKIG---Q-LQYLTCGLDR-FGPGSRIIITTRDKW---------ILDKFGVHDTNVYEVNGLRYHEALELFCN 315 (471)
Q Consensus 251 -~VLDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 315 (471)
-||||++... . .+.|...+.. ...+.++|+||+... +...+.. ...+++++++.++...++..
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~--~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW--GLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc--CeeEecCCCCHHHHHHHHHH
Confidence 1789996432 2 2333322221 123457888887532 2222222 35789999999998988876
Q ss_pred cc
Q 041795 316 CA 317 (471)
Q Consensus 316 ~a 317 (471)
.+
T Consensus 171 ~~ 172 (226)
T TIGR03420 171 RA 172 (226)
T ss_pred HH
Confidence 54
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=2e-05 Score=84.42 Aligned_cols=134 Identities=17% Similarity=0.188 Sum_probs=89.5
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc---------------------cccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK---------------------EFEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~f~~~~~ 240 (471)
..++++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.+.. .|...+.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 33578999999999999887432 2456679999999999999998886532 1222333
Q ss_pred eeh--------hhhhhhc------------CcccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCChhhh-hhhCcCCCc
Q 041795 241 LGN--------VREESEK------------GVLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDKWIL-DKFGVHDTN 297 (471)
Q Consensus 241 ~~~--------~~~~~~~------------~VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~~~~~~ 297 (471)
++. +++.... -|||+++.. ..++.|+..+.......++|+||.+..-. ..+. ....
T Consensus 93 IDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr-SRCq 171 (830)
T PRK07003 93 MDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL-SRCL 171 (830)
T ss_pred ecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh-hheE
Confidence 322 1111111 189999743 45777777666555678888888775432 1111 1146
Q ss_pred eEEeCCCCHHHHHHHHHhcc
Q 041795 298 VYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a 317 (471)
.+.++.++.++..+.+.+..
T Consensus 172 ~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 172 QFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred EEecCCcCHHHHHHHHHHHH
Confidence 79999999999998887765
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.08 E-value=1.4e-05 Score=82.27 Aligned_cols=128 Identities=23% Similarity=0.327 Sum_probs=79.8
Q ss_pred CCCccccchhHHH---HHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEee----ehhhhhh-------
Q 041795 183 FDGLVGLNSRIEK---IKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL----GNVREES------- 248 (471)
Q Consensus 183 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~----~~~~~~~------- 248 (471)
.++++|.+..+.. +.+++.. .....+.|+|++|+||||||+.+++.....|...--. ..+++..
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~ 88 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRR 88 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhh
Confidence 3568898877665 7777753 3456788999999999999999998765554321111 1111111
Q ss_pred h--c---CcccccCC--HhhHHHHhcCCCCCCCCcEEEE--EeCChhhh--h-hhCcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 249 E--K---GVLDDVNK--IGQLQYLTCGLDRFGPGSRIII--TTRDKWIL--D-KFGVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 249 ~--~---~VLDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~--~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
. . -++|+++. ..+.+.|+..+. .|..++| ||.+.... . .... ...+++++|+.++...++.+.
T Consensus 89 ~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR--~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 89 SAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR--AQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred hcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc--ceeeEeCCCCHHHHHHHHHHH
Confidence 0 1 18899974 445666665554 3454554 34443211 1 1111 357999999999999999875
Q ss_pred c
Q 041795 317 A 317 (471)
Q Consensus 317 a 317 (471)
.
T Consensus 164 l 164 (413)
T PRK13342 164 L 164 (413)
T ss_pred H
Confidence 4
No 24
>PF13173 AAA_14: AAA domain
Probab=98.07 E-value=7.6e-06 Score=69.77 Aligned_cols=102 Identities=22% Similarity=0.180 Sum_probs=66.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeee----------------hhhhhhh-c---CcccccCCHhhHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG----------------NVREESE-K---GVLDDVNKIGQLQYLT 266 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~----------------~~~~~~~-~---~VLDdv~~~~~~~~l~ 266 (471)
-+++.|.|+.|+|||||++++++... .-...+++. ...+... . -+||++.....|....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~l 80 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDAL 80 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHH
Confidence 36899999999999999999987754 112222221 0111100 1 1899998777777666
Q ss_pred cCCCCCCCCcEEEEEeCChhhhhhhC----cCCCceEEeCCCCHHHH
Q 041795 267 CGLDRFGPGSRIIITTRDKWILDKFG----VHDTNVYEVNGLRYHEA 309 (471)
Q Consensus 267 ~~~~~~~~gs~IiiTTR~~~v~~~~~----~~~~~~~~l~~L~~~ea 309 (471)
..+-..++..+|++|+........-. ......++|.||+..|-
T Consensus 81 k~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 81 KFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 55544456789999998876663311 11245689999998873
No 25
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.04 E-value=1.8e-05 Score=67.98 Aligned_cols=44 Identities=41% Similarity=0.581 Sum_probs=36.2
Q ss_pred cccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 187 VGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|++..+..+...+.. +..+.+.|+|.+|+|||+|++.+++...
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4778888888887763 2356889999999999999999999864
No 26
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.04 E-value=3.5e-05 Score=85.70 Aligned_cols=253 Identities=15% Similarity=0.178 Sum_probs=143.0
Q ss_pred ccccchhHHHHHHhhhcC-CCCceEEEEeccCcchhhhHHHHHHHhhhcc--------cc-------ceEeeehhhhhhh
Q 041795 186 LVGLNSRIEKIKSLLCIG-RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--------FE-------GNCFLGNVREESE 249 (471)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~-------~~~~~~~~~~~~~ 249 (471)
++||+.+++.|...+..- ...-.++.+.|..|||||+|.++|...+... |+ ...|+..+++...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 789999999999988743 2346699999999999999999999876544 11 0111211111111
Q ss_pred c--------------------C-------------------------------------------------------ccc
Q 041795 250 K--------------------G-------------------------------------------------------VLD 254 (471)
Q Consensus 250 ~--------------------~-------------------------------------------------------VLD 254 (471)
. | |+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 0 0 889
Q ss_pred cc-C-CHhhH---HHHhcCCCC-CCCCcEEEE--EeCCh--hhhhhhCcCCCceEEeCCCCHHHHHHHHHhccccCCC-C
Q 041795 255 DV-N-KIGQL---QYLTCGLDR-FGPGSRIII--TTRDK--WILDKFGVHDTNVYEVNGLRYHEALELFCNCAFKENH-C 323 (471)
Q Consensus 255 dv-~-~~~~~---~~l~~~~~~-~~~gs~Iii--TTR~~--~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~ 323 (471)
|+ | |...+ +.+.....- .-....+.. |.+.. .+..... ....+.|.||+..+...|.......... +
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~--~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSAT--NITTITLAPLSRADTNQLVAATLGCTKLLP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCC--ceeEEecCcCchhhHHHHHHHHhCCccccc
Confidence 98 3 33333 333332220 000112322 22322 1111111 2578999999999999988765433222 2
Q ss_pred CchHHHHHHHHHHHHhhhhcCC----------------CHHHHHHHHHHhcCCCC-CchHhHHHhhccCCChhHHHHHcc
Q 041795 324 PSGFLASSKRVLKVLGSFFHRK----------------SKLDWEKALENISRISD-PDIYDVLKISYNDLSLEEKSIFLD 386 (471)
Q Consensus 324 ~~~~~~l~~~il~~lg~~L~~~----------------~~~~w~~~l~~l~~~~~-~~i~~~l~~Sy~~L~~~~k~~fl~ 386 (471)
.+....+. -++-|..+.-. +...|..-...+...+. +++...+..-.+.||...|+.+-.
T Consensus 240 ~p~~~~i~---~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 240 APLLELIF---EKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred chHHHHHH---HHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33333333 34444444311 12222222222211111 224456888899999999999999
Q ss_pred cccccCCCCHHHHHHhhcc---cCccchHHHHhhCCCeeecC------CC----eEEecHHHHHHHHHHH
Q 041795 387 IACFFAGEEKDYVTRMLDP---NFPHNGLNILIAKSLVTVSN------DN----KIQMHDLLQEMGREVV 443 (471)
Q Consensus 387 ls~Fp~~~~~~~l~~lw~~---~~~~~~l~~L~~~sLi~~~~------~~----~~~mHdlv~~~a~~i~ 443 (471)
.||+-..++.+.|..++.. ..+...++.|....++..++ +. +-..||++|+.|-...
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 9999999999998888874 22333444444444443221 11 1257888888876544
No 27
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=4e-05 Score=80.31 Aligned_cols=135 Identities=24% Similarity=0.176 Sum_probs=86.5
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc--cccceEee------------------e
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK--EFEGNCFL------------------G 242 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~------------------~ 242 (471)
.++++|-+..++.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+. .
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 3568999988888888887432 2346799999999999999999988642 12222222 1
Q ss_pred --------hhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCceE
Q 041795 243 --------NVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTNVY 299 (471)
Q Consensus 243 --------~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~ 299 (471)
.+++.... + |+|+++. ...++.|+..+......+.+|++|... .+...+.. ....+
T Consensus 92 ~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S-Rc~~~ 170 (504)
T PRK14963 92 AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS-RTQHF 170 (504)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc-ceEEE
Confidence 11111000 0 8899874 345777777666555566666665443 33222211 14679
Q ss_pred EeCCCCHHHHHHHHHhcccc
Q 041795 300 EVNGLRYHEALELFCNCAFK 319 (471)
Q Consensus 300 ~l~~L~~~ea~~Lf~~~a~~ 319 (471)
++.+++.++....+.+.+-.
T Consensus 171 ~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 171 RFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred EecCCCHHHHHHHHHHHHHH
Confidence 99999999999988876643
No 28
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.97 E-value=4.1e-05 Score=72.06 Aligned_cols=130 Identities=20% Similarity=0.305 Sum_probs=70.4
Q ss_pred CCcc-ccchhH-HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhhhh-----c---Ccc
Q 041795 184 DGLV-GLNSRI-EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREESE-----K---GVL 253 (471)
Q Consensus 184 ~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-----~---~VL 253 (471)
++|+ |..... ..+.++.. +....+.+.|+|..|+|||+||+.+++.....=....+++....... . -++
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~lii 96 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEAELYAV 96 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccCCEEEE
Confidence 4455 554433 34444333 22345688999999999999999999875332223334433221111 1 188
Q ss_pred cccCCH--hhHHHHhcCCCCC-CCCc-EEEEEeCChhhhh--------hhCcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 254 DDVNKI--GQLQYLTCGLDRF-GPGS-RIIITTRDKWILD--------KFGVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 254 Ddv~~~--~~~~~l~~~~~~~-~~gs-~IiiTTR~~~v~~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
||++.. ...+.|...+... ..|. .+|+|++...... .+.. ...+++++|+.++-..++.+.
T Consensus 97 Ddi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~--~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 97 DDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW--GLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred eChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc--CeEEEecCCCHHHHHHHHHHH
Confidence 999633 2222333322211 1344 3666665432111 2211 357899999998877766654
No 29
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.95 E-value=6.5e-06 Score=74.48 Aligned_cols=50 Identities=28% Similarity=0.409 Sum_probs=35.6
Q ss_pred CccccchhHHHHHHhhh-cCCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 185 GLVGLNSRIEKIKSLLC-IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.|+||+++++++...|. ......+.+.|+|.+|+|||+|.++++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999995 233457899999999999999999999987766
No 30
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.92 E-value=6e-05 Score=75.27 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=81.5
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc-cc-eEeeehh----------------
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF-EG-NCFLGNV---------------- 244 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~---------------- 244 (471)
.+.++|++..++.+.+++..+ ..+.+.++|.+|+||||+|+.+++.+..+- .. ...+...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence 356899999999999988633 345688999999999999999988754321 11 1121110
Q ss_pred ------------------hhhh----------h-c--CcccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCChh-hhhh
Q 041795 245 ------------------REES----------E-K--GVLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDKW-ILDK 290 (471)
Q Consensus 245 ------------------~~~~----------~-~--~VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~ 290 (471)
++.. . . -|+||++.. ...+.|...+......+++|+||.+.. +...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 0000 0 0 188998643 233444443333345677888775432 2222
Q ss_pred hCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 291 FGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 291 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
+.. ....+++.+++.++....+.+.+
T Consensus 172 L~s-r~~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 172 IRS-RCLPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred hcC-CceEEEecCCCHHHHHHHHHHHH
Confidence 211 13568899999999888887765
No 31
>PRK08727 hypothetical protein; Validated
Probab=97.91 E-value=4.7e-05 Score=71.96 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=77.3
Q ss_pred CCccccc-hhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh------hhhhc------
Q 041795 184 DGLVGLN-SRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR------EESEK------ 250 (471)
Q Consensus 184 ~~~vGr~-~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~------~~~~~------ 250 (471)
++|++.. ..+..+..+.. + .....+.|+|.+|+|||.|++.+++....+.....|+.... +....
T Consensus 19 ~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dl 96 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSL 96 (233)
T ss_pred hhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCE
Confidence 4455444 33333333332 1 22356999999999999999999988655433445544211 10001
Q ss_pred CcccccCCH---hhHH-HHhcCCCC-CCCCcEEEEEeCCh---------hhhhhhCcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 251 GVLDDVNKI---GQLQ-YLTCGLDR-FGPGSRIIITTRDK---------WILDKFGVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 251 ~VLDdv~~~---~~~~-~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
-||||+... ..+. .+...++. ...|..+|+||+.. .+...+.. ..++++++++.++-.+++.++
T Consensus 97 LiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~--~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 97 VALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ--CIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc--CceEEecCCCHHHHHHHHHHH
Confidence 189998632 1222 22222211 12466799999853 22333322 457999999999999999987
Q ss_pred cc
Q 041795 317 AF 318 (471)
Q Consensus 317 a~ 318 (471)
+.
T Consensus 175 a~ 176 (233)
T PRK08727 175 AQ 176 (233)
T ss_pred HH
Confidence 64
No 32
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.89 E-value=7.5e-05 Score=76.07 Aligned_cols=148 Identities=26% Similarity=0.276 Sum_probs=86.1
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeeh--
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGN-- 243 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~-- 243 (471)
+++.|+++.+++|.+.+.. +-...+-|.++|.+|+|||+||+++++.....|-.. .|+..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~ 210 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGA 210 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchH
Confidence 4688999999999887631 113456789999999999999999998765432111 01100
Q ss_pred --hhhhhh---c-----CcccccCCH-------------hh---HHHHhcCCCCC--CCCcEEEEEeCChhhhhhh----
Q 041795 244 --VREESE---K-----GVLDDVNKI-------------GQ---LQYLTCGLDRF--GPGSRIIITTRDKWILDKF---- 291 (471)
Q Consensus 244 --~~~~~~---~-----~VLDdv~~~-------------~~---~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~---- 291 (471)
++.... . -+||+++.. +. +..++..+..+ ..+..||.||.........
T Consensus 211 ~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRp 290 (389)
T PRK03992 211 RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRP 290 (389)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCC
Confidence 000000 0 177888642 11 22233222221 2356677788754332211
Q ss_pred -CcCCCceEEeCCCCHHHHHHHHHhccccCCC-CCchHHHHHHH
Q 041795 292 -GVHDTNVYEVNGLRYHEALELFCNCAFKENH-CPSGFLASSKR 333 (471)
Q Consensus 292 -~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~l~~~ 333 (471)
.. +..++++..+.++-.++|..+..+... ...++..++..
T Consensus 291 gRf--d~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~ 332 (389)
T PRK03992 291 GRF--DRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAEL 332 (389)
T ss_pred ccC--ceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHH
Confidence 12 457999999999999999877643221 12345555443
No 33
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.89 E-value=3e-06 Score=83.86 Aligned_cols=233 Identities=20% Similarity=0.266 Sum_probs=141.7
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhhhhcC----------------------------------
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREESEKG---------------------------------- 251 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~---------------------------------- 251 (471)
..+.+.++|.|||||||++-.+.. +...|....|......+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRAL 91 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHH
Confidence 468999999999999999999988 777777665543332222210
Q ss_pred -cccccCCHh-hHHHHhcCCCCCCCCcEEEEEeCChhhhhhhCcCCCceEEeCCCCHH-HHHHHHHhcccc-------CC
Q 041795 252 -VLDDVNKIG-QLQYLTCGLDRFGPGSRIIITTRDKWILDKFGVHDTNVYEVNGLRYH-EALELFCNCAFK-------EN 321 (471)
Q Consensus 252 -VLDdv~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~-------~~ 321 (471)
|+||..... +-..+...+....+.-.|+.|+|+...... ...+.++.|+.. ++.++|...+-. ..
T Consensus 92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g-----e~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG-----EVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc-----cccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 777765432 222222222222334568888887654332 567888888876 688888776531 12
Q ss_pred CCCchHHHHHHHH------HHHHhhhhcCCCHHHHHHHHHH----hcC------CCCCchHhHHHhhccCCChhHHHHHc
Q 041795 322 HCPSGFLASSKRV------LKVLGSFFHRKSKLDWEKALEN----ISR------ISDPDIYDVLKISYNDLSLEEKSIFL 385 (471)
Q Consensus 322 ~~~~~~~~l~~~i------l~~lg~~L~~~~~~~w~~~l~~----l~~------~~~~~i~~~l~~Sy~~L~~~~k~~fl 385 (471)
...+...+|++.+ +...++..+.....+-..-|.. +.. .........+.+||.-|..-++-.|.
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~ 246 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFG 246 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhc
Confidence 2334456666665 3334443333332222222221 111 12245788999999999999999999
Q ss_pred ccccccCCCCHHHHHHhhcc--------cCccchHHHHhhCCCeeecC---CCeEEecHHHHHHHHHHHHh
Q 041795 386 DIACFFAGEEKDYVTRMLDP--------NFPHNGLNILIAKSLVTVSN---DNKIQMHDLLQEMGREVVRQ 445 (471)
Q Consensus 386 ~ls~Fp~~~~~~~l~~lw~~--------~~~~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~a~~i~~~ 445 (471)
.++.|...++.+ +...-.+ +.....+-.|+++|++...+ .-.|+.-+-.+.|+.....+
T Consensus 247 rLa~~~g~f~~~-l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 247 RLAVFVGGFDLG-LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred chhhhhhhhccc-HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999888665 2221111 33445678899999998653 22366666666666555533
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=6.2e-05 Score=79.74 Aligned_cols=134 Identities=22% Similarity=0.225 Sum_probs=88.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~ 240 (471)
....++|.+...+.|.+++..+. -...+.++|..|+||||+|+.+++.+... +.....
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 33578999999999999887432 24678999999999999999998875321 111222
Q ss_pred ee--------hhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhh-hCcCCC
Q 041795 241 LG--------NVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDK-FGVHDT 296 (471)
Q Consensus 241 ~~--------~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~ 296 (471)
+. .+++.... + |+|+++. ....+.|+..+.....+.++|++|.+.. +... ... .
T Consensus 92 IDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR--C 169 (702)
T PRK14960 92 IDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR--C 169 (702)
T ss_pred ecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh--h
Confidence 22 11111110 1 8899974 3466777766655556677888776643 2111 122 4
Q ss_pred ceEEeCCCCHHHHHHHHHhccc
Q 041795 297 NVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
..+++.+|+.++....+.+.+-
T Consensus 170 q~feFkpLs~eEI~k~L~~Il~ 191 (702)
T PRK14960 170 LQFTLRPLAVDEITKHLGAILE 191 (702)
T ss_pred heeeccCCCHHHHHHHHHHHHH
Confidence 6799999999999888876553
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=8.1e-05 Score=75.19 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=86.6
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc---------------------cceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF---------------------EGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~ 240 (471)
..++++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++.+.... .....
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 34578999999999998886432 245678999999999999999998753210 11111
Q ss_pred ee--------hhhhhhhc------------CcccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhh-CcCCC
Q 041795 241 LG--------NVREESEK------------GVLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKF-GVHDT 296 (471)
Q Consensus 241 ~~--------~~~~~~~~------------~VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~ 296 (471)
+. .+++.... -|+|+++.. ..++.|+..+.......++|++|.+.. +...+ .. .
T Consensus 93 ~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR--c 170 (363)
T PRK14961 93 IDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR--C 170 (363)
T ss_pred ecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh--c
Confidence 11 11111110 188999754 356677766665556777777765543 32222 11 4
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+++++++.++....+...+
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999988877655
No 36
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.87 E-value=7.4e-05 Score=70.72 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=68.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh------hhhhc------CcccccCCH---hhHHH-HhcCC
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR------EESEK------GVLDDVNKI---GQLQY-LTCGL 269 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~------~~~~~------~VLDdv~~~---~~~~~-l~~~~ 269 (471)
..+.+.|+|+.|+|||+|++.+++.....-....|+.... +.... -++||+... .+|+. |...+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~ 123 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLY 123 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHH
Confidence 3468899999999999999999987654323334433211 00000 178999532 23322 11111
Q ss_pred CCC-CCC-cEEEEEeCCh---------hhhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 270 DRF-GPG-SRIIITTRDK---------WILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 270 ~~~-~~g-s~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
+.. ..| .++|+||+.. .+...+.. ..+++++++++++-.+++.+++.
T Consensus 124 n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~--g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 124 NRILESGRTRLLITGDRPPRQLNLGLPDLASRLDW--GQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred HHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhC--CceeeecCCCHHHHHHHHHHHHH
Confidence 111 123 4799999754 33344433 57899999999999999887663
No 37
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.86 E-value=4.5e-05 Score=83.02 Aligned_cols=129 Identities=22% Similarity=0.326 Sum_probs=79.5
Q ss_pred CCCccccchhHH---HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccc-eEeeehhhh-------h---h
Q 041795 183 FDGLVGLNSRIE---KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEG-NCFLGNVRE-------E---S 248 (471)
Q Consensus 183 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~-------~---~ 248 (471)
.++|+|.+..+. .+.+.+. .+....+.++|++|+||||||+.+++.....|.. .+....+.+ . .
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l 104 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERL 104 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHh
Confidence 356899888774 4555555 3345678899999999999999999887655421 111111111 0 0
Q ss_pred h---c---CcccccC--CHhhHHHHhcCCCCCCCCcEEEE--EeCChh--hhhhhCcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 249 E---K---GVLDDVN--KIGQLQYLTCGLDRFGPGSRIII--TTRDKW--ILDKFGVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 249 ~---~---~VLDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~--v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
. . -+|||++ +..+.+.|+..+. .|+.++| ||.+.. +..... ....++.+++|+.++...++.+.
T Consensus 105 ~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~-SR~~v~~l~pLs~edi~~IL~~~ 180 (725)
T PRK13341 105 ERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALV-SRSRLFRLKSLSDEDLHQLLKRA 180 (725)
T ss_pred hhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhh-ccccceecCCCCHHHHHHHHHHH
Confidence 0 0 1899996 4556677765543 4555555 344432 111111 01457999999999999988875
Q ss_pred c
Q 041795 317 A 317 (471)
Q Consensus 317 a 317 (471)
+
T Consensus 181 l 181 (725)
T PRK13341 181 L 181 (725)
T ss_pred H
Confidence 4
No 38
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.85 E-value=0.0001 Score=68.96 Aligned_cols=111 Identities=19% Similarity=0.247 Sum_probs=65.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcccc--ceEeeehhh------hhh---------hc------CcccccCCH---
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE--GNCFLGNVR------EES---------EK------GVLDDVNKI--- 259 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~------~~~---------~~------~VLDdv~~~--- 259 (471)
....+-|+|..|+|||.|.+++++.+..... .++++.... ... .. -++||++..
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc
Confidence 3556889999999999999999998765433 234443110 000 00 189999642
Q ss_pred hhH-HHHhcCCCC-CCCCcEEEEEeCCh---------hhhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 260 GQL-QYLTCGLDR-FGPGSRIIITTRDK---------WILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 260 ~~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
..| +.|...++. ...|.+||+|++.. .+...+.. .-++++++++.++-..++.+.+-
T Consensus 113 ~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~--Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 113 QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW--GLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC--SEEEEE----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh--cchhhcCCCCHHHHHHHHHHHHH
Confidence 222 222222211 13577899999643 22233333 56799999999999999998874
No 39
>PLN03025 replication factor C subunit; Provisional
Probab=97.85 E-value=5e-05 Score=75.37 Aligned_cols=133 Identities=19% Similarity=0.292 Sum_probs=82.1
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc-cccceEe-ee--------hhhhhh----
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK-EFEGNCF-LG--------NVREES---- 248 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~-~~--------~~~~~~---- 248 (471)
..+++|.++.++.|..++..+ ..+-+.++|.+|+||||+|+.+++.+.. .|...+. +. .+++..
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~ 89 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFA 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHH
Confidence 356889988888888877633 3445789999999999999999988532 2321111 11 111110
Q ss_pred h------c-----CcccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCceEEeCCCCHHHHHHHHH
Q 041795 249 E------K-----GVLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTNVYEVNGLRYHEALELFC 314 (471)
Q Consensus 249 ~------~-----~VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 314 (471)
. . -+||+++.. ...+.|...+...+..+++|+++... .+...+.. ....+++++++.++....+.
T Consensus 90 ~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S-Rc~~i~f~~l~~~~l~~~L~ 168 (319)
T PLN03025 90 QKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS-RCAIVRFSRLSDQEILGRLM 168 (319)
T ss_pred hccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH-hhhcccCCCCCHHHHHHHHH
Confidence 0 0 189999743 33445554444445667777776543 22211110 13468999999999988887
Q ss_pred hccc
Q 041795 315 NCAF 318 (471)
Q Consensus 315 ~~a~ 318 (471)
..+-
T Consensus 169 ~i~~ 172 (319)
T PLN03025 169 KVVE 172 (319)
T ss_pred HHHH
Confidence 7663
No 40
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=7.7e-05 Score=73.85 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=90.1
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh------ccccceEeee---------hhhhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY------KEFEGNCFLG---------NVREES 248 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~f~~~~~~~---------~~~~~~ 248 (471)
++++|-+..++.+.+.+..+ .-.....++|+.|+||||+|+.++..+. .+.+...|.. .+++..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH
Confidence 45789888888898888633 2345778999999999999999998752 2334434432 122211
Q ss_pred hc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCChhhh-hhhCcCCCceEEeCCCCHHHHHHHH
Q 041795 249 EK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDKWIL-DKFGVHDTNVYEVNGLRYHEALELF 313 (471)
Q Consensus 249 ~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~~~~~~~~~l~~L~~~ea~~Lf 313 (471)
.. + |+|+++ +...++.|+..+.....++.+|++|.+...+ ..+.. ....+++.+++.++....+
T Consensus 83 ~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 83 EEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS-RCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred HHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh-hceeeeCCCcCHHHHHHHH
Confidence 10 1 788875 5567888888888777899999988766432 21111 1467999999999998877
Q ss_pred Hhc
Q 041795 314 CNC 316 (471)
Q Consensus 314 ~~~ 316 (471)
.+.
T Consensus 162 ~~~ 164 (313)
T PRK05564 162 SYK 164 (313)
T ss_pred HHH
Confidence 654
No 41
>PRK09087 hypothetical protein; Validated
Probab=97.82 E-value=4.2e-05 Score=71.90 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehh------hhhhhc--CcccccCC----HhhHHHHhcCCCCCCC
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNV------REESEK--GVLDDVNK----IGQLQYLTCGLDRFGP 274 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~------~~~~~~--~VLDdv~~----~~~~~~l~~~~~~~~~ 274 (471)
.+.+.|+|..|+|||+|++.+++.... .++... -..... -++||+.. .+.+-.+...+. ..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~--~~ 116 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-----LLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVR--QA 116 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-----EEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHH--hC
Confidence 467899999999999999998876422 233321 111111 27899853 222222222222 24
Q ss_pred CcEEEEEeCC---------hhhhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 275 GSRIIITTRD---------KWILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 275 gs~IiiTTR~---------~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
|..||+|++. +.+...+.. ..++++++++.++-.+++.+.+-
T Consensus 117 g~~ilits~~~p~~~~~~~~dL~SRl~~--gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 117 GTSLLMTSRLWPSSWNVKLPDLKSRLKA--ATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred CCeEEEECCCChHHhccccccHHHHHhC--CceeecCCCCHHHHHHHHHHHHH
Confidence 6779999874 334444444 57899999999999999988773
No 42
>PRK04195 replication factor C large subunit; Provisional
Probab=97.79 E-value=0.00017 Score=75.80 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCCccccchhHHHHHHhhhc--CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEee-------ehhhh-------
Q 041795 183 FDGLVGLNSRIEKIKSLLCI--GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL-------GNVRE------- 246 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-------~~~~~------- 246 (471)
.+.++|.+..++.|.+|+.. .+...+.+.|+|++|+||||+|+.+++.+.. +..-+= ..+..
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~--~~ielnasd~r~~~~i~~~i~~~~~ 90 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW--EVIELNASDQRTADVIERVAGEAAT 90 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--CEEEEcccccccHHHHHHHHHHhhc
Confidence 35689999999999999863 2223678999999999999999999997632 111110 00000
Q ss_pred ---hh--hc--CcccccCCH------hhHHHHhcCCCCCCCCcEEEEEeCChhhh-h-hhCcCCCceEEeCCCCHHHHHH
Q 041795 247 ---ES--EK--GVLDDVNKI------GQLQYLTCGLDRFGPGSRIIITTRDKWIL-D-KFGVHDTNVYEVNGLRYHEALE 311 (471)
Q Consensus 247 ---~~--~~--~VLDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~-~~~~~~~~~~~l~~L~~~ea~~ 311 (471)
.. .. -|+|+++.. .....|...+. ..+..||+|+.+..-. . .+. .....+++++++.++...
T Consensus 91 ~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr-sr~~~I~f~~~~~~~i~~ 167 (482)
T PRK04195 91 SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR-NACLMIEFKRLSTRSIVP 167 (482)
T ss_pred cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh-ccceEEEecCCCHHHHHH
Confidence 00 00 188998753 22444544433 2334567776443211 1 111 014678999999999988
Q ss_pred HHHhccc
Q 041795 312 LFCNCAF 318 (471)
Q Consensus 312 Lf~~~a~ 318 (471)
.+...+.
T Consensus 168 ~L~~i~~ 174 (482)
T PRK04195 168 VLKRICR 174 (482)
T ss_pred HHHHHHH
Confidence 8877654
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00027 Score=73.51 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=81.7
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEee
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCFL 241 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~ 241 (471)
.+.++|.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... +.....+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 3578999888888887776332 23568899999999999999998875321 0011122
Q ss_pred ehh--------hhhhhc-------C-----cccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhhCcCCCce
Q 041795 242 GNV--------REESEK-------G-----VLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRD-KWILDKFGVHDTNV 298 (471)
Q Consensus 242 ~~~--------~~~~~~-------~-----VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~~ 298 (471)
... ++.... + ++|+++.. ...+.|+..+...+....+|++|.+ ..+...+.. ....
T Consensus 92 ~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S-R~~v 170 (472)
T PRK14962 92 DAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS-RCQV 170 (472)
T ss_pred eCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc-CcEE
Confidence 211 110000 1 78998643 4456666666544444555545444 333222211 1467
Q ss_pred EEeCCCCHHHHHHHHHhccc
Q 041795 299 YEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 299 ~~l~~L~~~ea~~Lf~~~a~ 318 (471)
+++.+++.++....+.+.+.
T Consensus 171 v~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 171 IEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred EEECCccHHHHHHHHHHHHH
Confidence 99999999998888877653
No 44
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.78 E-value=7.9e-05 Score=72.44 Aligned_cols=105 Identities=23% Similarity=0.303 Sum_probs=70.2
Q ss_pred CCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee---------hhhhhhhc--------C-----cccccC--CH
Q 041795 204 RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG---------NVREESEK--------G-----VLDDVN--KI 259 (471)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---------~~~~~~~~--------~-----VLDdv~--~~ 259 (471)
.+....+.+||++|+||||||+.+.+.-+.+= ..|+. +++...++ + .+|.|. +.
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 45688899999999999999999998755541 22322 22222221 0 678885 45
Q ss_pred hhHHHHhcCCCCCCCCcEEEE--EeCChhhh---hhhCcCCCceEEeCCCCHHHHHHHHHh
Q 041795 260 GQLQYLTCGLDRFGPGSRIII--TTRDKWIL---DKFGVHDTNVYEVNGLRYHEALELFCN 315 (471)
Q Consensus 260 ~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~---~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 315 (471)
.|-+.+++. ...|.-++| ||.++... ..+.. ..++.|++|+.++...++.+
T Consensus 237 sQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLlSR--C~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 237 SQQDTFLPH---VENGDITLIGATTENPSFQLNAALLSR--CRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred hhhhcccce---eccCceEEEecccCCCccchhHHHHhc--cceeEeccCCHHHHHHHHHH
Confidence 555666544 346877776 78776432 11222 56799999999999998887
No 45
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00026 Score=71.23 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=87.9
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc--------------------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF-------------------------- 235 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-------------------------- 235 (471)
...+++|-+...+.|.+.+..+. -...+.++|+.|+||+|+|..+++.+-.+=
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i 95 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI 95 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH
Confidence 45679999999999998887432 245788999999999999999888753210
Q ss_pred -----cceEeee-----------------hhhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEE
Q 041795 236 -----EGNCFLG-----------------NVREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRII 279 (471)
Q Consensus 236 -----~~~~~~~-----------------~~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~Ii 279 (471)
....++. .+++.... + |+|+++ +....+.|+..+.....++.+|
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 0111221 11111100 0 789986 4556667776666555677778
Q ss_pred EEeCChh-hhhhhCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 280 ITTRDKW-ILDKFGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 280 iTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
++|.+.. +...+. .....+.+.+|+.++..+++....
T Consensus 176 L~t~~~~~llpti~-SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 176 LVSHAPARLLPTIR-SRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEECCchhchHHhh-ccceEEECCCCCHHHHHHHHHHhc
Confidence 8777654 322221 125689999999999999998754
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00012 Score=70.51 Aligned_cols=130 Identities=19% Similarity=0.214 Sum_probs=74.7
Q ss_pred CccccchhHHHHHHhhh----------c---CCCCceEEEEeccCcchhhhHHHHHHHhhhcc--ccceEee--eh----
Q 041795 185 GLVGLNSRIEKIKSLLC----------I---GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--FEGNCFL--GN---- 243 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~----------~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~--~~---- 243 (471)
.++|.+..+++|.+... . ..+....+.++|.+|+||||+|+.+++.+... .....++ ..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 47888877777664322 0 12335678899999999999999998764321 0111111 10
Q ss_pred ----------hhhhhhc---C--cccccCC----------HhhHHHHhcCCCCCCCCcEEEEEeCChhh----------h
Q 041795 244 ----------VREESEK---G--VLDDVNK----------IGQLQYLTCGLDRFGPGSRIIITTRDKWI----------L 288 (471)
Q Consensus 244 ----------~~~~~~~---~--VLDdv~~----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v----------~ 288 (471)
..+.... + ++|+++. .+..+.|...+........+|+++..... .
T Consensus 87 ~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 87 GEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred hhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHH
Confidence 0111111 1 7898863 23455566555443334455555543221 1
Q ss_pred hhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 289 DKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 289 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
..+ ...+++++++.++-.+++.+.+-
T Consensus 167 sRf----~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 167 SRF----PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred hcc----ceEEEECCCCHHHHHHHHHHHHH
Confidence 111 34688999999999998887653
No 47
>PRK05642 DNA replication initiation factor; Validated
Probab=97.74 E-value=0.00013 Score=69.07 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=68.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh------hhhhc------CcccccCC---HhhHHH-HhcCCC
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR------EESEK------GVLDDVNK---IGQLQY-LTCGLD 270 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~------~~~~~------~VLDdv~~---~~~~~~-l~~~~~ 270 (471)
...+.|+|..|+|||.|++.+++.+...-..++|+.... ..... -++||+.. ...|+. |...++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n 124 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFN 124 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHH
Confidence 367899999999999999999987654434455655321 00000 17999952 223322 333322
Q ss_pred C-CCCCcEEEEEeCChh---------hhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 271 R-FGPGSRIIITTRDKW---------ILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 271 ~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
. ...|..||+||+... +...+.. ..++++++++.++-..++.+++.
T Consensus 125 ~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~--gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 125 RLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL--ALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred HHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc--CeeeecCCCCHHHHHHHHHHHHH
Confidence 1 124678999887532 2222222 36789999999999999886653
No 48
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.73 E-value=3.6e-05 Score=67.51 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=56.4
Q ss_pred eEEEccccccc-CcchHHHHHHHHHhC-CcceeecCCCCCC--CCCCcHHHHHHhhhcceEEEEEccCc
Q 041795 13 DVSLSFRGGDT-RDNFTSHLYAALCRK-KIKTFINGDEIRR--GDDISPALFTAIQGSKISVIVLSKHY 77 (471)
Q Consensus 13 dvFiS~~~~D~-~~~f~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~y 77 (471)
-|||||+.... ...+|..|++.|+.. |+.|.+|.|+... +......+.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999998553 235799999999999 9999999999854 77888999999999999999999765
No 49
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=9.5e-05 Score=80.76 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=87.9
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~ 240 (471)
....++|-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+... |....+
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 33578999999999998886332 24456899999999999999999886432 111122
Q ss_pred eeh--------hhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCc
Q 041795 241 LGN--------VREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTN 297 (471)
Q Consensus 241 ~~~--------~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~ 297 (471)
+.. +++.... + |||+++ +...++.|+..+.......++|++|.+. .+...+-. ...
T Consensus 93 idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS-RCq 171 (944)
T PRK14949 93 VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS-RCL 171 (944)
T ss_pred eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH-hhe
Confidence 221 1211110 1 899996 4566788877776555667776666543 33322111 146
Q ss_pred eEEeCCCCHHHHHHHHHhcc
Q 041795 298 VYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a 317 (471)
.|++++|+.++....+.+.+
T Consensus 172 ~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 172 QFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 79999999999998887754
No 50
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00015 Score=76.42 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=85.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~ 240 (471)
...+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... |.....
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3357899999999999888633 224567899999999999999999865421 122222
Q ss_pred eeh--------hhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhh-CcCCC
Q 041795 241 LGN--------VREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKF-GVHDT 296 (471)
Q Consensus 241 ~~~--------~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~ 296 (471)
+.. +++.... + |+|+++ +....+.|+..+......+.+|++|-+ ..+...+ .. .
T Consensus 93 idaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR--c 170 (546)
T PRK14957 93 IDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR--C 170 (546)
T ss_pred eecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh--e
Confidence 221 1111000 1 889997 445677777777655556666655443 3333221 12 4
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+++++++.++....+.+.+
T Consensus 171 ~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 171 IQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred eeEEeCCCCHHHHHHHHHHHH
Confidence 679999999999887777643
No 51
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.69 E-value=8.4e-05 Score=73.63 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=78.8
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEe----eehhhhhh----h----
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF----LGNVREES----E---- 249 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~----~~~~~~~~----~---- 249 (471)
...+++|.+...+.+..++..+ .-..++.++|.+|+|||++|+.+++.....+-..-. +..+++.. .
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~ 97 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSL 97 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcc
Confidence 4467899999999999988742 235677779999999999999999875432210000 11111100 0
Q ss_pred ---c--CcccccCCH---hhHHHHhcCCCCCCCCcEEEEEeCChhhh-hhhCcCCCceEEeCCCCHHHHHHHHHh
Q 041795 250 ---K--GVLDDVNKI---GQLQYLTCGLDRFGPGSRIIITTRDKWIL-DKFGVHDTNVYEVNGLRYHEALELFCN 315 (471)
Q Consensus 250 ---~--~VLDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 315 (471)
. -|+|+++.. +..+.|...+.....++++|+||...... ..+.. ....+.++..+.++...++..
T Consensus 98 ~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s-R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 98 TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS-RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh-hceEEEeCCCCHHHHHHHHHH
Confidence 0 188998743 22233333334445678899988654321 11110 134677878888887765543
No 52
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=8.5e-05 Score=78.58 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=87.6
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc--------------------------c
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--------------------------F 235 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------------f 235 (471)
..+++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+... |
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 34578999999999999887432 24567899999999999999998875431 1
Q ss_pred cceEeeeh--------hhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhhC
Q 041795 236 EGNCFLGN--------VREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKFG 292 (471)
Q Consensus 236 ~~~~~~~~--------~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~ 292 (471)
...+.++. +++.... + |||+++. ...++.|+..+.....++++|++|.+ ..+...+.
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 11222221 1221111 1 8999974 45678888777655556666665554 33332221
Q ss_pred cCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 293 VHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 293 ~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
. ....+.++.++.++..+.+.+.+
T Consensus 173 S-RCq~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 173 S-RCLQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred H-HHHhcccCCCChHHHHHHHHHHH
Confidence 1 14569999999999988877654
No 53
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.69 E-value=0.00013 Score=72.20 Aligned_cols=132 Identities=24% Similarity=0.311 Sum_probs=81.1
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-ccceE-eee------------hhhhhh
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNC-FLG------------NVREES 248 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~-~~~------------~~~~~~ 248 (471)
-.+++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+... +...+ -+. .+.+..
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHH
Confidence 356899999999999988643 34457999999999999999999875322 21111 110 000000
Q ss_pred ----h--c----CcccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhh-CcCCCceEEeCCCCHHHHHHHHH
Q 041795 249 ----E--K----GVLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDK-WILDKF-GVHDTNVYEVNGLRYHEALELFC 314 (471)
Q Consensus 249 ----~--~----~VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~ 314 (471)
. . -++|+++.. ...+.|...+......+++|+++... .+.... .. ...+++++++.++....+.
T Consensus 94 ~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~l~~~ei~~~l~ 171 (319)
T PRK00440 94 RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR--CAVFRFSPLKKEAVAERLR 171 (319)
T ss_pred hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH--hheeeeCCCCHHHHHHHHH
Confidence 0 0 167888632 33445554444444566777776432 221111 11 3468999999999988887
Q ss_pred hccc
Q 041795 315 NCAF 318 (471)
Q Consensus 315 ~~a~ 318 (471)
..+-
T Consensus 172 ~~~~ 175 (319)
T PRK00440 172 YIAE 175 (319)
T ss_pred HHHH
Confidence 7664
No 54
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00022 Score=74.58 Aligned_cols=136 Identities=22% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc--------c-----------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF--------E----------------- 236 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--------~----------------- 236 (471)
...+++|-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+...- .
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 34578999998998888776332 245789999999999999999998753211 0
Q ss_pred ceEeeeh--------hhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEE-EeCChhhhhhhCc
Q 041795 237 GNCFLGN--------VREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIII-TTRDKWILDKFGV 293 (471)
Q Consensus 237 ~~~~~~~--------~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v~~~~~~ 293 (471)
....++. +++.... + |+|+++. ...++.|+..+....+.+.+|+ ||+...+...+..
T Consensus 98 Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~S 177 (507)
T PRK06645 98 DIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS 177 (507)
T ss_pred cEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHh
Confidence 0111111 1111100 0 8999975 4567777776665555666655 5554444433321
Q ss_pred CCCceEEeCCCCHHHHHHHHHhcccc
Q 041795 294 HDTNVYEVNGLRYHEALELFCNCAFK 319 (471)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~Lf~~~a~~ 319 (471)
....+++.+++.++....+.+.+-.
T Consensus 178 -Rc~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 178 -RCQRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred -cceEEEccCCCHHHHHHHHHHHHHH
Confidence 1457999999999999988877643
No 55
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00051 Score=73.39 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=86.2
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc--------------------------c
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--------------------------F 235 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------------f 235 (471)
..++++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+... +
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 34578998888888888887432 34577899999999999999997764321 1
Q ss_pred cceEeee--------hhhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhh-
Q 041795 236 EGNCFLG--------NVREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKF- 291 (471)
Q Consensus 236 ~~~~~~~--------~~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~- 291 (471)
.....++ .+++.... + |||+|+ +...++.|+..+.......++|++|.+ ..+...+
T Consensus 93 ~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIl 172 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVL 172 (618)
T ss_pred CceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHH
Confidence 1122222 12222111 1 899997 445677787776655556666665544 3333221
Q ss_pred CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 292 GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 292 ~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.. ...+++++|+.++....+.+.+
T Consensus 173 SR--c~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 173 SR--CLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred Hh--ceeeecCCCCHHHHHHHHHHHH
Confidence 22 4679999999999988887655
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00021 Score=72.65 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=85.2
Q ss_pred CCccccchhHHHHHHhhhcCCC--------CceEEEEeccCcchhhhHHHHHHHhhhccc--------------------
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRP--------DFRIVGIWGMGGTGKTTLAGAIFNLIYKEF-------------------- 235 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-------------------- 235 (471)
++++|-+..++.|.+.+..+.+ -...+.++|+.|+|||++|+.++..+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688988888889988874321 246788999999999999999987643221
Q ss_pred cceEee---------ehhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhh
Q 041795 236 EGNCFL---------GNVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKF 291 (471)
Q Consensus 236 ~~~~~~---------~~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~ 291 (471)
....++ ..+++.... + ++|+++. ....+.|+..+.....+..+|++|.+. .+...+
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 111122 122222111 1 7899873 445566766665555677777777664 333222
Q ss_pred CcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 292 GVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 292 ~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
.. ....+.+++++.++..+.+...
T Consensus 165 rS-Rc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 165 RS-RCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred Hh-hCeEEECCCCCHHHHHHHHHHh
Confidence 11 1468999999999999888743
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00022 Score=73.41 Aligned_cols=134 Identities=17% Similarity=0.161 Sum_probs=85.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcccc---------------------ceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE---------------------GNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~~~ 240 (471)
...+++|-+..+..|..++..+. -...+.++|..|+||||+|+.+++.+...-. ....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcccee
Confidence 34578999999999998887432 2346899999999999999999887543210 0011
Q ss_pred ee--------hhhhhhh-------cC-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhhCcCCCc
Q 041795 241 LG--------NVREESE-------KG-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKFGVHDTN 297 (471)
Q Consensus 241 ~~--------~~~~~~~-------~~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~ 297 (471)
+. .+++... .+ |+|+++ +...++.|+..+........+|++|.+ ..+...+.. ...
T Consensus 95 Idaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S-RCq 173 (484)
T PRK14956 95 IDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS-RCQ 173 (484)
T ss_pred echhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh-hhh
Confidence 11 1111111 01 899997 455688887777654455655555543 333322211 145
Q ss_pred eEEeCCCCHHHHHHHHHhcc
Q 041795 298 VYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a 317 (471)
.|.+.+++.++....+.+.+
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred eeeecCCCHHHHHHHHHHHH
Confidence 69999999999888777765
No 58
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00024 Score=73.76 Aligned_cols=135 Identities=18% Similarity=0.219 Sum_probs=86.4
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc---------------------cccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK---------------------EFEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~f~~~~~ 240 (471)
...+++|-+..++.|.+.+..+. -...+.++|..|+||||+|+.++..+.. .+.....
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 34678999988888888776332 2457899999999999999999875421 1112223
Q ss_pred eeh--------hhhhhhc------------CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhhCcCCCc
Q 041795 241 LGN--------VREESEK------------GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKFGVHDTN 297 (471)
Q Consensus 241 ~~~--------~~~~~~~------------~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~ 297 (471)
++. +++.... -|+|+++. ...++.|+..+....+.+.+|++|.+ ..+...+.. ...
T Consensus 90 idaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S-Rc~ 168 (491)
T PRK14964 90 IDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS-RCQ 168 (491)
T ss_pred EecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH-hhe
Confidence 322 1111110 08899863 34567777766655567777766543 333332211 146
Q ss_pred eEEeCCCCHHHHHHHHHhccc
Q 041795 298 VYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.+++.+++.++....+.+.+-
T Consensus 169 ~~~f~~l~~~el~~~L~~ia~ 189 (491)
T PRK14964 169 RFDLQKIPTDKLVEHLVDIAK 189 (491)
T ss_pred eeecccccHHHHHHHHHHHHH
Confidence 789999999998888877654
No 59
>PRK06620 hypothetical protein; Validated
Probab=97.63 E-value=0.00016 Score=67.43 Aligned_cols=105 Identities=18% Similarity=0.105 Sum_probs=63.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhhhhc---CcccccCCHhh--HHHHhcCCCCCCCCcEEEEEe
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREESEK---GVLDDVNKIGQ--LQYLTCGLDRFGPGSRIIITT 282 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~---~VLDdv~~~~~--~~~l~~~~~~~~~gs~IiiTT 282 (471)
+.+-|+|.+|+|||+|++.+++.....|....+. ..+.... -++||+....+ +-.+...+. ..|..||+|+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~--~~~~~~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits 120 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFF--NEEILEKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTS 120 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhh--chhHHhcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEc
Confidence 6789999999999999999877643222111100 0011111 27899974332 222222221 3467899998
Q ss_pred CChh-------hhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 283 RDKW-------ILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 283 R~~~-------v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
+... +...+.. .-++++++++.++-..++.+.+-
T Consensus 121 ~~~p~~l~l~~L~SRl~~--gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 121 SDKSRNFTLPDLSSRIKS--VLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CCCccccchHHHHHHHhC--CceEeeCCCCHHHHHHHHHHHHH
Confidence 7542 2233332 45899999999998888877653
No 60
>PTZ00202 tuzin; Provisional
Probab=97.61 E-value=8.1e-05 Score=74.88 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=43.5
Q ss_pred cCCCCccccchhHHHHHHhhhcCC-CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 181 TNFDGLVGLNSRIEKIKSLLCIGR-PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+...|+||+.++.+|...|...+ ...+++.|.|++|+|||||++.+.....
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 367899999999999999997433 3356999999999999999999986643
No 61
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.00023 Score=76.17 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=84.0
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~ 240 (471)
...+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.+... |.....
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 33578999999999999887432 24578999999999999999998764221 111122
Q ss_pred ee--------hhhhhhhc------------CcccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhh-CcCCC
Q 041795 241 LG--------NVREESEK------------GVLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKF-GVHDT 296 (471)
Q Consensus 241 ~~--------~~~~~~~~------------~VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~ 296 (471)
+. .+++.... -|+|+++.. ...+.|+..+......+++|++|.+.. +...+ .. .
T Consensus 93 idaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR--C 170 (709)
T PRK08691 93 IDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR--C 170 (709)
T ss_pred EeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH--H
Confidence 21 12222110 189998743 345566655544445667777765542 22111 11 3
Q ss_pred ceEEeCCCCHHHHHHHHHhccc
Q 041795 297 NVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
..+++.+++.++....+.+.+-
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHH
Confidence 4578889999998887776553
No 62
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.00046 Score=76.25 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=86.4
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc------------------------ccce
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE------------------------FEGN 238 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------------f~~~ 238 (471)
...++|-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+... ++ .
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 3568999999999999887432 23467899999999999999998876421 11 1
Q ss_pred Eeee--------hhhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhhCcCC
Q 041795 239 CFLG--------NVREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKFGVHD 295 (471)
Q Consensus 239 ~~~~--------~~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~ 295 (471)
..++ .+++.... + |||+++ +....+.|+..+......+.+|++|.+ ..+...+.. .
T Consensus 92 ~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrS-R 170 (824)
T PRK07764 92 TEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS-R 170 (824)
T ss_pred EEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh-h
Confidence 2222 12221110 0 899997 345667777777665566666665543 344433221 1
Q ss_pred CceEEeCCCCHHHHHHHHHhcc
Q 041795 296 TNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 296 ~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
...|++..++.++....+.+..
T Consensus 171 c~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 171 THHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred eeEEEeeCCCHHHHHHHHHHHH
Confidence 5679999999999888777644
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.57 E-value=0.00057 Score=68.77 Aligned_cols=134 Identities=17% Similarity=0.235 Sum_probs=85.8
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc----------------------cccceE
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK----------------------EFEGNC 239 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~----------------------~f~~~~ 239 (471)
....++|.+..++.+.+.+..+. -...+.++|.+|+||||+|+.+...+.. +++. .
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 33568999999999999886432 2457889999999999999999887532 1222 2
Q ss_pred eeehh--------hhhhhc-------C-----cccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCC
Q 041795 240 FLGNV--------REESEK-------G-----VLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDT 296 (471)
Q Consensus 240 ~~~~~--------~~~~~~-------~-----VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~ 296 (471)
.+... ++.... + |+|+++.. ...+.|+..+......+.+|++|.+.. +...+.. ..
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s-r~ 168 (355)
T TIGR02397 90 EIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS-RC 168 (355)
T ss_pred EeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh-he
Confidence 22211 111110 0 78988643 456666666655455677777775544 2222211 14
Q ss_pred ceEEeCCCCHHHHHHHHHhccc
Q 041795 297 NVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
..+++++++.++....+...+-
T Consensus 169 ~~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 169 QRFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred eEEEcCCCCHHHHHHHHHHHHH
Confidence 5789999999998888877553
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.57 E-value=0.00042 Score=67.51 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=73.4
Q ss_pred CccccchhHHHHHHhhh----------cC--C-CCceEEEEeccCcchhhhHHHHHHHhhhcc--cc--ceEeeehh---
Q 041795 185 GLVGLNSRIEKIKSLLC----------IG--R-PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--FE--GNCFLGNV--- 244 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~----------~~--~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~--~~~~~~~~--- 244 (471)
.++|.++.+++|.++.. .+ . ....-+.++|.+|+|||++|+.++..+... .. ..+.+...
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 36777766666654321 01 0 112358899999999999998887764321 11 11111110
Q ss_pred -----------hhhhhc---C--cccccCC-----------HhhHHHHhcCCCCCCCCcEEEEEeCChhhhhhhCc----
Q 041795 245 -----------REESEK---G--VLDDVNK-----------IGQLQYLTCGLDRFGPGSRIIITTRDKWILDKFGV---- 293 (471)
Q Consensus 245 -----------~~~~~~---~--VLDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~---- 293 (471)
.+.... + +||++.. .+..+.|...+.....+.+||.++.....-.....
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L 182 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGF 182 (284)
T ss_pred HhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHH
Confidence 001111 2 7898852 22345555555544456677777654322111111
Q ss_pred --CCCceEEeCCCCHHHHHHHHHhcc
Q 041795 294 --HDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 294 --~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.-...+++++++.+|-..++...+
T Consensus 183 ~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 183 SSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred HhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 003568999999999999888765
No 65
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0012 Score=66.05 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=85.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc----cc----------c----------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE----FE----------G---------- 237 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~----------~---------- 237 (471)
....++|-+...+.+...+..+. -...+.|+|..|+||||+|..+++.+..+ +. +
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGA 99 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCC
Confidence 56779999999999999886432 34578999999999999999998875431 10 0
Q ss_pred ---eEeeeh---h--------------hhhh---h----cC-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeC
Q 041795 238 ---NCFLGN---V--------------REES---E----KG-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTR 283 (471)
Q Consensus 238 ---~~~~~~---~--------------~~~~---~----~~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR 283 (471)
..++.. . ++.. . .+ |+|+++ +....+.|+..+.....+..+|++|.
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 011210 0 0000 0 00 789997 34456666666554445555555554
Q ss_pred Ch-hhhhhhCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 284 DK-WILDKFGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 284 ~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.. .+...+.. ....+++++++.++...++.+..
T Consensus 180 ~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 180 SSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred ChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhh
Confidence 43 33322221 14689999999999999998743
No 66
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00021 Score=76.42 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=86.4
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~ 240 (471)
...++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+... |.....
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 34678999999999998887432 23457899999999999999998875432 111122
Q ss_pred ee--------hhhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhh-CcCCC
Q 041795 241 LG--------NVREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKF-GVHDT 296 (471)
Q Consensus 241 ~~--------~~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~ 296 (471)
+. .+++.... | |+|+++ +....+.|+..+.......++|++|.+. .+...+ .. .
T Consensus 93 idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR--C 170 (647)
T PRK07994 93 IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--C 170 (647)
T ss_pred ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh--h
Confidence 22 11211110 1 899996 4456777777666555566666655544 333222 22 4
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..|++++|+.++....+.+..
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHH
Confidence 679999999999998887654
No 67
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.51 E-value=0.00033 Score=77.29 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.+++.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999887442 33467999999999999999999863
No 68
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0011 Score=69.71 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=84.2
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~ 240 (471)
...++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+... +.....
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 33578999999999999987432 24467899999999999999998875321 111222
Q ss_pred eeh--------hhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCc
Q 041795 241 LGN--------VREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTN 297 (471)
Q Consensus 241 ~~~--------~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~ 297 (471)
+.. +++.... + |+|+++. ....+.|+..+......+++|++|-+. .+...+.. ...
T Consensus 93 idaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S-Rc~ 171 (509)
T PRK14958 93 VDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS-RCL 171 (509)
T ss_pred EcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH-Hhh
Confidence 321 1111110 1 8999974 456677776666555667777665543 22222110 135
Q ss_pred eEEeCCCCHHHHHHHHHhcc
Q 041795 298 VYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a 317 (471)
.+++++++.++....+.+.+
T Consensus 172 ~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 172 QFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred hhhcCCCCHHHHHHHHHHHH
Confidence 68899999888766554443
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.49 E-value=0.0013 Score=70.99 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=39.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+.++|.+..++.+.+.+.. .....+.|+|.+|+||||||+.+++..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999988877742 335679999999999999999998764
No 70
>CHL00181 cbbX CbbX; Provisional
Probab=97.49 E-value=0.00072 Score=65.92 Aligned_cols=134 Identities=17% Similarity=0.161 Sum_probs=74.9
Q ss_pred CccccchhHHHHHHhhh------------cCC-CCceEEEEeccCcchhhhHHHHHHHhhhcc-c-c--ceEeeehh---
Q 041795 185 GLVGLNSRIEKIKSLLC------------IGR-PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-F-E--GNCFLGNV--- 244 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~------------~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~--~~~~~~~~--- 244 (471)
.++|.+..+++|.++.. ... .....+.++|.+|+||||+|+.+++..... + . ....+...
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 36777666665544321 011 123358899999999999999998764221 1 1 11111100
Q ss_pred -----------hhhhh---cC--cccccCC-----------HhhHHHHhcCCCCCCCCcEEEEEeCChhhhhhhCc----
Q 041795 245 -----------REESE---KG--VLDDVNK-----------IGQLQYLTCGLDRFGPGSRIIITTRDKWILDKFGV---- 293 (471)
Q Consensus 245 -----------~~~~~---~~--VLDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~---- 293 (471)
..... .+ +||+++. .+..+.|...+.....+.+||.++....+......
T Consensus 104 ~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L 183 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGL 183 (287)
T ss_pred HHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHH
Confidence 00111 12 7898853 23345555555544456777777754333211100
Q ss_pred --CCCceEEeCCCCHHHHHHHHHhccc
Q 041795 294 --HDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 294 --~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.-...+++++++.+|-.+++...+-
T Consensus 184 ~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 184 SSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred HHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 0045789999999999988877653
No 71
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.48 E-value=0.00085 Score=70.07 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=79.8
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccc-----cceEeeehh---
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF-----EGNCFLGNV--- 244 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~--- 244 (471)
.++.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+.+++.+...+ ....|+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 4578899999988876531 112356789999999999999999999865431 122333210
Q ss_pred -------------hhh-------hh---c--CcccccCCHh--------------hHHHHhcCCCCCC--CCcEEEEEeC
Q 041795 245 -------------REE-------SE---K--GVLDDVNKIG--------------QLQYLTCGLDRFG--PGSRIIITTR 283 (471)
Q Consensus 245 -------------~~~-------~~---~--~VLDdv~~~~--------------~~~~l~~~~~~~~--~gs~IiiTTR 283 (471)
+.. .. . -+||+++... .+..|+..++... .+..||.||.
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN 341 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN 341 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC
Confidence 000 00 0 1678886320 1234444443222 3445566665
Q ss_pred Chhhhhh-----hCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 284 DKWILDK-----FGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 284 ~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
....+.. ... +..++++..+.++..++|..+.
T Consensus 342 ~~d~LDpALlRpGRf--D~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 342 REDMIDPAILRPGRL--DVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ChhhCCHhhcCcccc--ceEEEeCCCCHHHHHHHHHHHh
Confidence 5433221 122 4568999999999999998875
No 72
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.00048 Score=72.89 Aligned_cols=133 Identities=18% Similarity=0.139 Sum_probs=84.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc------c---------------cceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE------F---------------EGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f---------------~~~~~ 240 (471)
....++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++.+... . ....+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Diie 92 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVE 92 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEE
Confidence 34578999999999998886432 24678899999999999999998875321 0 01122
Q ss_pred eeh--------hhhhhhc------------CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhh-hCcCCC
Q 041795 241 LGN--------VREESEK------------GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRD-KWILDK-FGVHDT 296 (471)
Q Consensus 241 ~~~--------~~~~~~~------------~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~ 296 (471)
+.. +++.... -|+|+++. ...++.|+..+......+.+|++|.. ..+... ... .
T Consensus 93 Idaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR--c 170 (605)
T PRK05896 93 LDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR--C 170 (605)
T ss_pred eccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh--h
Confidence 221 1111110 08899864 45566776655544455666555533 333322 112 4
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+++.+++.++....+...+
T Consensus 171 q~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 171 QRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred hhcccCCCCHHHHHHHHHHHH
Confidence 579999999999988777655
No 73
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.47 E-value=0.00069 Score=68.98 Aligned_cols=133 Identities=24% Similarity=0.279 Sum_probs=78.8
Q ss_pred CCCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE-------eeehh
Q 041795 183 FDGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC-------FLGNV 244 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-------~~~~~ 244 (471)
-.++.|.+..+++|.+.+.. +-...+-+.++|.+|+|||+||+.+++.....|-... |+...
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~ 223 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEG 223 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchh
Confidence 35688999999888876531 1134678999999999999999999987554432110 11110
Q ss_pred ----hhhhh----c----CcccccCCH-------------h---hHHHHhcCCCCC--CCCcEEEEEeCChhhhhh----
Q 041795 245 ----REESE----K----GVLDDVNKI-------------G---QLQYLTCGLDRF--GPGSRIIITTRDKWILDK---- 290 (471)
Q Consensus 245 ----~~~~~----~----~VLDdv~~~-------------~---~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~---- 290 (471)
++... . -+||+++.. . .+..++..+..+ ..+..||.||.....+..
T Consensus 224 ~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR 303 (398)
T PTZ00454 224 PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR 303 (398)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcC
Confidence 00000 0 167886521 0 122333333322 235678888876543321
Q ss_pred -hCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 291 -FGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 291 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
... +..++++..+.++-..+|..+.
T Consensus 304 ~GRf--d~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 304 PGRL--DRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCcc--cEEEEeCCcCHHHHHHHHHHHH
Confidence 122 4568999888888877777554
No 74
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.47 E-value=0.00016 Score=66.68 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=72.8
Q ss_pred CCCCccccchhHHHHHHhhh---cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEe--eehhhhhh------hc
Q 041795 182 NFDGLVGLNSRIEKIKSLLC---IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF--LGNVREES------EK 250 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~--~~~~~~~~------~~ 250 (471)
.-++|+|-+.-++.+.-++. ..++.+..+.+||++|+||||||..+++.....|...-= +....+.. ..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~ 101 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKE 101 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--T
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCC
Confidence 44689999988888776654 234457889999999999999999999998777642110 11111110 01
Q ss_pred C---cccccC--CHhhHHHHhcCCCCC--------CCC-----------cEEEEEeCChhhhhhhCcCCCceEEeCCCCH
Q 041795 251 G---VLDDVN--KIGQLQYLTCGLDRF--------GPG-----------SRIIITTRDKWILDKFGVHDTNVYEVNGLRY 306 (471)
Q Consensus 251 ~---VLDdv~--~~~~~~~l~~~~~~~--------~~g-----------s~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~ 306 (471)
+ .+|.+. +..+-+.|.+.+..+ +++ +-|=-|||...+...+...=.-+.++...+.
T Consensus 102 ~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~ 181 (233)
T PF05496_consen 102 GDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSE 181 (233)
T ss_dssp T-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----TH
T ss_pred CcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCH
Confidence 1 678886 344444444333211 111 2244477765443322210023457888999
Q ss_pred HHHHHHHHhccc
Q 041795 307 HEALELFCNCAF 318 (471)
Q Consensus 307 ~ea~~Lf~~~a~ 318 (471)
+|-..+..+.+-
T Consensus 182 ~el~~Iv~r~a~ 193 (233)
T PF05496_consen 182 EELAKIVKRSAR 193 (233)
T ss_dssp HHHHHHHHHCCH
T ss_pred HHHHHHHHHHHH
Confidence 998888887663
No 75
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.43 E-value=0.00099 Score=60.68 Aligned_cols=120 Identities=22% Similarity=0.173 Sum_probs=73.3
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEeee---------hh
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCFLG---------NV 244 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~---------~~ 244 (471)
.+.+.+..+ .-...+.++|..|+||||+|+.+...+... +....++. .+
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 344444422 224678999999999999999998875431 11112221 11
Q ss_pred hhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCceEEeCCCCHHHH
Q 041795 245 REESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTNVYEVNGLRYHEA 309 (471)
Q Consensus 245 ~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea 309 (471)
++.... + |+||++. ....+.|+..+......+.+|++|++. .+...+.. ....+++.+++.++.
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s-r~~~~~~~~~~~~~~ 160 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS-RCQVLPFPPLSEEAL 160 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh-hcEEeeCCCCCHHHH
Confidence 111100 1 8899864 345667777666555667777777654 22222211 146899999999999
Q ss_pred HHHHHhc
Q 041795 310 LELFCNC 316 (471)
Q Consensus 310 ~~Lf~~~ 316 (471)
.+.+.+.
T Consensus 161 ~~~l~~~ 167 (188)
T TIGR00678 161 LQWLIRQ 167 (188)
T ss_pred HHHHHHc
Confidence 8888776
No 76
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.39 E-value=0.00041 Score=66.27 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=98.6
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc--cccceEe-eeh--------hh----h
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK--EFEGNCF-LGN--------VR----E 246 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~-~~~--------~~----~ 246 (471)
..+.++|-+..+..|.+.+.. ...+....+|++|.|||+-|..++..+-. -|.+.+- .++ ++ .
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 446789999888888888764 46788999999999999999999887533 2443332 110 00 0
Q ss_pred hhhc-----------------CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCceEEeCCCCH
Q 041795 247 ESEK-----------------GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTNVYEVNGLRY 306 (471)
Q Consensus 247 ~~~~-----------------~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~ 306 (471)
+... -|||+++. .+.|..|...+..+..-++.|+.+-.-. +...+ .....-|..++|..
T Consensus 112 fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi-~SRC~KfrFk~L~d 190 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL-VSRCQKFRFKKLKD 190 (346)
T ss_pred HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH-HhhHHHhcCCCcch
Confidence 0000 08999985 4678888888877777777665544322 11111 00134588999999
Q ss_pred HHHHHHHHhccccCC-CCCchHHHHHHHHHHHHhhhhc
Q 041795 307 HEALELFCNCAFKEN-HCPSGFLASSKRVLKVLGSFFH 343 (471)
Q Consensus 307 ~ea~~Lf~~~a~~~~-~~~~~~~~l~~~il~~lg~~L~ 343 (471)
++...-+...+-..+ ... .+..+.|++.-++-||
T Consensus 191 ~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 191 EDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLR 225 (346)
T ss_pred HHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHH
Confidence 999888888775443 222 3333444555555544
No 77
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.39 E-value=0.0022 Score=69.75 Aligned_cols=51 Identities=25% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCCCccccchhHHHHHHhhhc---CCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI---GRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++.+.||++++++|...|.. +.....++-|+|.+|.|||++++.|.+.+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 557899999999999998863 233345778999999999999999988753
No 78
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.39 E-value=0.0008 Score=64.87 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+.|+|.+|+|||||++.+++...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45889999999999999999998765
No 79
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0018 Score=69.41 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=83.5
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--------------------------- 234 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------------- 234 (471)
....++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 3457899999889898888633 224468899999999999999998875321
Q ss_pred ---ccceEe-------eehhhhhhhc-------C-----cccccCCH--hhHHHHhcCCCCCCCCcEEEEEe-CChhhhh
Q 041795 235 ---FEGNCF-------LGNVREESEK-------G-----VLDDVNKI--GQLQYLTCGLDRFGPGSRIIITT-RDKWILD 289 (471)
Q Consensus 235 ---f~~~~~-------~~~~~~~~~~-------~-----VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~ 289 (471)
++...+ ++.+++.... + |+|+++.. ...+.|+..+......+.+|++| +...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 111111 1111111100 1 88998643 44667776666544556655554 4344433
Q ss_pred hh-CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 290 KF-GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 290 ~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.+ .. ...+++.+++.++....+.+.+
T Consensus 173 TI~SR--c~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 173 TIASR--CQRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred HHHhh--ceEEecCCCCHHHHHHHHHHHH
Confidence 22 22 5679999999999887776654
No 80
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.36 E-value=0.00072 Score=69.47 Aligned_cols=132 Identities=27% Similarity=0.312 Sum_probs=79.5
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE-------eeeh--
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC-------FLGN-- 243 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-------~~~~-- 243 (471)
.++.|.+..+++|.+.+.. +-...+-+.++|.+|+|||+||+.+++.....|-... |+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~ 262 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGP 262 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHH
Confidence 4578999999999887641 1123567889999999999999999998655442111 1100
Q ss_pred --hhhhhh---c-----CcccccCCH----------------hhHHHHhcCCCCC--CCCcEEEEEeCChhhhhhh----
Q 041795 244 --VREESE---K-----GVLDDVNKI----------------GQLQYLTCGLDRF--GPGSRIIITTRDKWILDKF---- 291 (471)
Q Consensus 244 --~~~~~~---~-----~VLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~---- 291 (471)
++.... . -+||+++.. ..+..++..+..+ ..+..||.||.....+...
T Consensus 263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRp 342 (438)
T PTZ00361 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRP 342 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccC
Confidence 000000 0 156776421 0112233222221 2356788888765444321
Q ss_pred -CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 292 -GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 292 -~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.. ...++++..+.++-.++|..+.
T Consensus 343 GRf--d~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 343 GRI--DRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred Cee--EEEEEeCCCCHHHHHHHHHHHH
Confidence 12 4578999999999999998765
No 81
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.0012 Score=70.48 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=86.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcccc-----------c-------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE-----------G------------- 237 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----------~------------- 237 (471)
...+++|.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+..... +
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 44679999999999999887432 2457889999999999999999987543210 0
Q ss_pred --eEeee--------hhhhhhhc------------CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEe-CChhhhhhhC
Q 041795 238 --NCFLG--------NVREESEK------------GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITT-RDKWILDKFG 292 (471)
Q Consensus 238 --~~~~~--------~~~~~~~~------------~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~ 292 (471)
..++. .+++.... -|+|+++. ....+.|+..+......+.+|++| ....+...+.
T Consensus 101 ~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 101 VDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred CceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHH
Confidence 11211 11111110 08899864 345667776665555667766555 4334433321
Q ss_pred cCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 293 VHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 293 ~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
. ....+++..++.++....+.+.+
T Consensus 181 S-Rcq~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 181 S-RCQRFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred h-heeEEEecCCCHHHHHHHHHHHH
Confidence 1 14579999999999988887765
No 82
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00053 Score=70.18 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=83.6
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--------------------------- 234 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------------- 234 (471)
....++|-+..++.|.+++..+. -...+.++|+.|+||||+|..+++.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 34678999988888888886332 23458899999999999999999876431
Q ss_pred ---ccceEe-------eehhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEe-CChhhhh
Q 041795 235 ---FEGNCF-------LGNVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITT-RDKWILD 289 (471)
Q Consensus 235 ---f~~~~~-------~~~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~ 289 (471)
++...+ +..+++.... + |+|+++. ...++.|+..+....+.+.+|++| +...+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 111111 1111111100 0 8899874 345777776666555667766655 4333333
Q ss_pred hhCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 290 KFGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 290 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.+.. ....+++++++.++....+...+
T Consensus 173 tl~s-R~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 173 TIAS-RCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHH-HHHHhhcCCCCHHHHHHHHHHHH
Confidence 2211 03568999999998887776654
No 83
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0012 Score=66.86 Aligned_cols=135 Identities=19% Similarity=0.287 Sum_probs=83.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc--------cccceEe-ee--------hh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK--------EFEGNCF-LG--------NV 244 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~f~~~~~-~~--------~~ 244 (471)
.-++++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+.+.+.. .|..... +. .+
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 3457899999999999988643 23458889999999999999999887543 1222221 11 11
Q ss_pred hhhhh----c---C-----cccccCCH--hhHHHHhcCCCCCCCCcEEEEEe-CChhhhhhhCcCCCceEEeCCCCHHHH
Q 041795 245 REESE----K---G-----VLDDVNKI--GQLQYLTCGLDRFGPGSRIIITT-RDKWILDKFGVHDTNVYEVNGLRYHEA 309 (471)
Q Consensus 245 ~~~~~----~---~-----VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea 309 (471)
++... . + ++|+++.. ..++.+...+......+.+|++| ....+...... ....+++++++.++.
T Consensus 94 ~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s-r~~~v~~~~~~~~~l 172 (367)
T PRK14970 94 RNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS-RCQIFDFKRITIKDI 172 (367)
T ss_pred HHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh-cceeEecCCccHHHH
Confidence 11111 0 1 78988643 34666655444334455555555 33333222211 145789999999998
Q ss_pred HHHHHhccc
Q 041795 310 LELFCNCAF 318 (471)
Q Consensus 310 ~~Lf~~~a~ 318 (471)
...+...+.
T Consensus 173 ~~~l~~~~~ 181 (367)
T PRK14970 173 KEHLAGIAV 181 (367)
T ss_pred HHHHHHHHH
Confidence 888877654
No 84
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.00089 Score=70.84 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=82.8
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEee
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCFL 241 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~ 241 (471)
..+++|-+..++.|.+++..+. -...+.++|..|+||||+|+.++..+... |.....+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3568999999999998887332 24467899999999999999998875321 1112222
Q ss_pred eh--------hhhhhhc-------C-----cccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhh-CcCCCc
Q 041795 242 GN--------VREESEK-------G-----VLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDK-WILDKF-GVHDTN 297 (471)
Q Consensus 242 ~~--------~~~~~~~-------~-----VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~ 297 (471)
.. +++.... + |+|+++.. ...+.|+..+......+.+|++|.+. .+...+ .. ..
T Consensus 94 ~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR--c~ 171 (527)
T PRK14969 94 DAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR--CL 171 (527)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH--HH
Confidence 21 1111110 1 88999743 44667776666555566666666443 222111 11 34
Q ss_pred eEEeCCCCHHHHHHHHHhcc
Q 041795 298 VYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a 317 (471)
.+++++++.++....+.+.+
T Consensus 172 ~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 172 QFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 68899999998887666544
No 85
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.25 E-value=0.0028 Score=66.02 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=67.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccc--eEeeehhh------hh---------hhc------CcccccCCH---h
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEG--NCFLGNVR------EE---------SEK------GVLDDVNKI---G 260 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~------~~---------~~~------~VLDdv~~~---~ 260 (471)
...+.|+|.+|+|||+|++.+++.+...+.. ..++.... .. ... -+|||+... .
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCH
Confidence 4678999999999999999999997765422 33443211 00 000 188999532 1
Q ss_pred -hHHHHhcCCCC-CCCCcEEEEEeCChh---------hhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 261 -QLQYLTCGLDR-FGPGSRIIITTRDKW---------ILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 261 -~~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
..+.+...++. ...|..||+||.... +...+.. ..++++++++.++-..++.+.+-
T Consensus 228 ~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 228 RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEW--GLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcC--CeeEEecCCCHHHHHHHHHHHHH
Confidence 11222221111 123556888876531 2223322 45799999999999999998774
No 86
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0012 Score=70.19 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=85.4
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc-----------------------cce
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF-----------------------EGN 238 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----------------------~~~ 238 (471)
..++++|-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+.... ...
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 33578999999999999887432 234578999999999999999988754210 011
Q ss_pred Eeeeh--------hhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeC-ChhhhhhhCcCC
Q 041795 239 CFLGN--------VREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTR-DKWILDKFGVHD 295 (471)
Q Consensus 239 ~~~~~--------~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~~~~~~~ 295 (471)
..++. +++.... + |+|+++ +....+.|+..+........+|++|. ...+...+.. .
T Consensus 90 ieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S-R 168 (584)
T PRK14952 90 VELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS-R 168 (584)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH-h
Confidence 12221 1111000 0 889986 44567777777665555666665554 3444432211 1
Q ss_pred CceEEeCCCCHHHHHHHHHhcc
Q 041795 296 TNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 296 ~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
...+++..++.++....+.+.+
T Consensus 169 c~~~~F~~l~~~~i~~~L~~i~ 190 (584)
T PRK14952 169 THHYPFRLLPPRTMRALIARIC 190 (584)
T ss_pred ceEEEeeCCCHHHHHHHHHHHH
Confidence 4679999999999888777654
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.24 E-value=0.0017 Score=66.77 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=65.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcccc--ceEeeehhh---h------------hhhc------CcccccCCHh---
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFE--GNCFLGNVR---E------------ESEK------GVLDDVNKIG--- 260 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~---~------------~~~~------~VLDdv~~~~--- 260 (471)
...+.|+|..|+|||.|++++++.+..... ...++.... + +... -+|||++...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCH
Confidence 457899999999999999999998765532 234444211 0 0000 1899996321
Q ss_pred h-HHHHhcCCCC-CCCCcEEEEEeCCh-h--------hhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 261 Q-LQYLTCGLDR-FGPGSRIIITTRDK-W--------ILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 261 ~-~~~l~~~~~~-~~~gs~IiiTTR~~-~--------v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
. .+.+...+.. ...|..+|+||... . +...+.. ...+++++.+.++-..++.+.+-
T Consensus 216 ~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 216 RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW--GLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC--CeEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1222222211 12356688887642 2 1222221 34689999999999998888764
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.20 E-value=0.0012 Score=73.64 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=39.8
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+.++||+.++.++.+.|.... ..-+.++|.+|+||||||+.+++.+.
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHh
Confidence 3579999999999999887433 33556999999999999999999864
No 89
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.20 E-value=0.0015 Score=69.31 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=67.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcccc--ceEeeehhh---hh------------hh---c---CcccccCCH---h
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFE--GNCFLGNVR---EE------------SE---K---GVLDDVNKI---G 260 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~---~~------------~~---~---~VLDdv~~~---~ 260 (471)
...+.|+|..|+|||.|++.+++.....+. .+.++.... +. .. . -+|||+... +
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH
Confidence 345899999999999999999998754321 234443210 10 00 0 189999532 2
Q ss_pred hH-HHHhcCCCC-CCCCcEEEEEeCCh---------hhhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 261 QL-QYLTCGLDR-FGPGSRIIITTRDK---------WILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 261 ~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.+ +.|...++. ...|..|||||... .+...+.. .-+++|+..+.+.-..++.+++-
T Consensus 394 ~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~--GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW--GLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc--CceEEcCCCCHHHHHHHHHHHHH
Confidence 22 222222211 12356799988753 23333433 56899999999999999988774
No 90
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0021 Score=69.05 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=83.5
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcccc----------------------ceEe
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE----------------------GNCF 240 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~----------------------~~~~ 240 (471)
.++++|-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+..... ....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 3578999999999988886432 2456789999999999999999887532110 0111
Q ss_pred ee--------hhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhhCcCCCc
Q 041795 241 LG--------NVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKFGVHDTN 297 (471)
Q Consensus 241 ~~--------~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~~~ 297 (471)
+. .+++.... + |+|+++. .+..+.|+..+......+.+|++|.+ ..+...+.. ...
T Consensus 94 i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S-R~~ 172 (585)
T PRK14950 94 MDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS-RCQ 172 (585)
T ss_pred EeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh-ccc
Confidence 11 11111110 0 8899863 35567776666554456666666644 333322211 135
Q ss_pred eEEeCCCCHHHHHHHHHhccc
Q 041795 298 VYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.+++..++..+....+.+.+.
T Consensus 173 ~i~f~~l~~~el~~~L~~~a~ 193 (585)
T PRK14950 173 RFDFHRHSVADMAAHLRKIAA 193 (585)
T ss_pred eeeCCCCCHHHHHHHHHHHHH
Confidence 688999999988887776653
No 91
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.16 E-value=0.0012 Score=72.54 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+.++||+.+++++.+.|.... ..-+.++|.+|+|||+||+.+++.+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999887532 2344689999999999999999874
No 92
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.12 E-value=0.0014 Score=73.32 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+.++||+++++++.+.|.... ..-+.++|.+|+|||++|+.++..+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 458999999999999997433 23456999999999999999998864
No 93
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.12 E-value=0.0022 Score=66.56 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=66.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccc--cceEeeeh----------hhh-------hhhc------CcccccCCH--
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEF--EGNCFLGN----------VRE-------ESEK------GVLDDVNKI-- 259 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~----------~~~-------~~~~------~VLDdv~~~-- 259 (471)
...+.|+|..|+|||.|++++++.+.... ..++++.. ... .... -+|||+...
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC
Confidence 45689999999999999999999765322 12234431 010 0000 189999532
Q ss_pred --hhHHHHhcCCCC-CCCCcEEEEEeCCh---------hhhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 260 --GQLQYLTCGLDR-FGPGSRIIITTRDK---------WILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 260 --~~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
...+.|...++. ...|..||+|+... .+...+.. .-++++++++.++-.+++.+++-
T Consensus 221 k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~--Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 221 KEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM--GLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC--CceeccCCcCHHHHHHHHHHHHH
Confidence 122333222221 12455788887643 23333333 45788999999999999988763
No 94
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.00038 Score=69.60 Aligned_cols=40 Identities=25% Similarity=0.014 Sum_probs=34.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc-cccceEeeehhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK-EFEGNCFLGNVRE 246 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~ 246 (471)
-...+|+|++|+||||||+.+|+.+.. +|+..+|+..+.+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE 209 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE 209 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 457899999999999999999998654 7999999985544
No 95
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0053 Score=66.12 Aligned_cols=135 Identities=18% Similarity=0.250 Sum_probs=86.7
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc-----------------------cccce
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK-----------------------EFEGN 238 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----------------------~f~~~ 238 (471)
..+.++|-+..++.|...+..+. -...+.++|..|+||||+|+.+...+.. +|+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 33578999999999998886332 2456889999999999999998886531 23322
Q ss_pred Ee-------eehhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEe-CChhhhhhhCcCCC
Q 041795 239 CF-------LGNVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITT-RDKWILDKFGVHDT 296 (471)
Q Consensus 239 ~~-------~~~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~ 296 (471)
.+ +..+++.... + |+|+++. ...++.|+..+......+.+|++| ....+...+.. ..
T Consensus 94 ~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S-Rc 172 (614)
T PRK14971 94 ELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS-RC 172 (614)
T ss_pred EecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh-hh
Confidence 22 1112221110 1 8899864 345677776666555566666544 44444433221 14
Q ss_pred ceEEeCCCCHHHHHHHHHhccc
Q 041795 297 NVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.++++++++.++....+.+.+-
T Consensus 173 ~iv~f~~ls~~ei~~~L~~ia~ 194 (614)
T PRK14971 173 QIFDFNRIQVADIVNHLQYVAS 194 (614)
T ss_pred heeecCCCCHHHHHHHHHHHHH
Confidence 6799999999999888876553
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0019 Score=68.71 Aligned_cols=133 Identities=12% Similarity=0.045 Sum_probs=84.2
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc---------------------cceEee
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF---------------------EGNCFL 241 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~~ 241 (471)
..+++|-+..++.|.+.+..+ .-...+.++|..|+||||+|+.+++.+.... ....++
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 356899888888888887633 2246788999999999999999998754311 112233
Q ss_pred eh--------hhhhhhc------------CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhh-CcCCCc
Q 041795 242 GN--------VREESEK------------GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKF-GVHDTN 297 (471)
Q Consensus 242 ~~--------~~~~~~~------------~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~ 297 (471)
.. ++..... -|+|+++. ....+.|+..+........+|++|.+ ..+...+ .. ..
T Consensus 94 d~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR--cq 171 (624)
T PRK14959 94 DGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR--CQ 171 (624)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh--hh
Confidence 21 1211100 18899864 35567777666544445556665554 3333222 11 35
Q ss_pred eEEeCCCCHHHHHHHHHhccc
Q 041795 298 VYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.+++++++.++....+...+.
T Consensus 172 ~i~F~pLs~~eL~~~L~~il~ 192 (624)
T PRK14959 172 HFTFTRLSEAGLEAHLTKVLG 192 (624)
T ss_pred ccccCCCCHHHHHHHHHHHHH
Confidence 689999999999888877554
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.06 E-value=0.0036 Score=65.00 Aligned_cols=133 Identities=17% Similarity=0.238 Sum_probs=83.2
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-----------------------ccce
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-----------------------FEGN 238 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------f~~~ 238 (471)
...+++|-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+... ++ .
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 34578999999999999886332 24568899999999999999998875321 11 1
Q ss_pred Eeee--------hhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhhCcCC
Q 041795 239 CFLG--------NVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRD-KWILDKFGVHD 295 (471)
Q Consensus 239 ~~~~--------~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~~~~~~ 295 (471)
..+. .+++.... + |+|+++. ....+.|+..+........+|++|.+ ..+...+.. .
T Consensus 93 ~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s-R 171 (451)
T PRK06305 93 LEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS-R 171 (451)
T ss_pred EEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH-h
Confidence 1121 11111100 1 7898863 34456666666554456666666643 333222111 1
Q ss_pred CceEEeCCCCHHHHHHHHHhcc
Q 041795 296 TNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 296 ~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
...+++++++.++....+.+.+
T Consensus 172 c~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 172 CQKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred ceEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999888777654
No 98
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.03 E-value=0.0018 Score=67.05 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=66.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh----------h-----hhhc------CcccccCCHh----h
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR----------E-----ESEK------GVLDDVNKIG----Q 261 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~----------~-----~~~~------~VLDdv~~~~----~ 261 (471)
...+.|+|..|+|||+|++.+++.+...-....++.... . +... -++||+.... .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~ 220 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGAT 220 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhh
Confidence 456889999999999999999998754433344544210 0 0000 1889985321 1
Q ss_pred HHHHhcCCCC-CCCCcEEEEEeCCh---------hhhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 262 LQYLTCGLDR-FGPGSRIIITTRDK---------WILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 262 ~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.+.+...++. ...|..||+||... .+...+.. ..++++++++.++-..++.+.+-
T Consensus 221 qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~--Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 221 QEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW--GIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC--CeEEecCCCCHHHHHHHHHHHHH
Confidence 1222222110 12356788888542 22222322 46789999999999999988763
No 99
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.00 E-value=0.0035 Score=70.24 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+.++||+.+++++.+.|.... ..-+.++|.+|+|||+||+.++..+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 569999999999999887443 334569999999999999999988643
No 100
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.00 E-value=0.0035 Score=66.10 Aligned_cols=134 Identities=24% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCCccccchhHHHHHHhhh---c-------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE---e----ee--
Q 041795 182 NFDGLVGLNSRIEKIKSLLC---I-------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC---F----LG-- 242 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~---~----~~-- 242 (471)
.-++++|.+..++++.+++. . +....+-+.++|++|+|||+||+.+++.....|-..- | +.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~ 132 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVG 132 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhccc
Confidence 33567888887777766443 1 1223456899999999999999999986433321100 0 00
Q ss_pred --hhhhhhhc--------CcccccCCH----------------hhHHHHhcCCCCC--CCCcEEEEEeCChhhh-----h
Q 041795 243 --NVREESEK--------GVLDDVNKI----------------GQLQYLTCGLDRF--GPGSRIIITTRDKWIL-----D 289 (471)
Q Consensus 243 --~~~~~~~~--------~VLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~-----~ 289 (471)
.++..... -+||+++.. .....|+..++.+ ..+..||.||...... .
T Consensus 133 ~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r 212 (495)
T TIGR01241 133 ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLR 212 (495)
T ss_pred HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhc
Confidence 01111100 167887431 1123333333322 2344566677654322 2
Q ss_pred hhCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 290 KFGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 290 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.... +..++++..+.++-.++|..+.
T Consensus 213 ~gRf--d~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 213 PGRF--DRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred CCcc--eEEEEcCCCCHHHHHHHHHHHH
Confidence 1122 4678899888888888887655
No 101
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.00 E-value=0.0005 Score=57.56 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=21.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|+|.|++|+||||+|+.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 102
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.005 Score=64.76 Aligned_cols=134 Identities=18% Similarity=0.190 Sum_probs=85.7
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc-c-------------------cc-ceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK-E-------------------FE-GNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~-------------------f~-~~~~ 240 (471)
....++|-+...+.|...+..+. -..+..++|..|+||||+|+.+++.+.. . +. ....
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34578998888889998886332 2456789999999999999999887531 1 00 1111
Q ss_pred ee--------hhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCc
Q 041795 241 LG--------NVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTN 297 (471)
Q Consensus 241 ~~--------~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~ 297 (471)
+. .+++.... + |+|+++. .+..+.|+..+......+++|++|.+.. +...+.. ...
T Consensus 91 ldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~S-Rc~ 169 (535)
T PRK08451 91 MDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILS-RTQ 169 (535)
T ss_pred eccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHh-hce
Confidence 11 22222111 1 8899864 4556777766665556777777776642 2211111 146
Q ss_pred eEEeCCCCHHHHHHHHHhcc
Q 041795 298 VYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a 317 (471)
.+++.+++.++....+.+.+
T Consensus 170 ~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 170 HFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred eEEcCCCCHHHHHHHHHHHH
Confidence 79999999999988777654
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.0055 Score=63.49 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=65.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcccc--ceEeeehhh---------------hhh---h--c--CcccccCCH---
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFE--GNCFLGNVR---------------EES---E--K--GVLDDVNKI--- 259 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~---------------~~~---~--~--~VLDdv~~~--- 259 (471)
...+.|+|.+|+|||+|++++++.+..... ...|+.... ++. . . -++||+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 456999999999999999999998765432 234443110 000 0 0 188999632
Q ss_pred hhH-HHHhcCCCC-CCCCcEEEEEeC-Chhhh--------hhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 260 GQL-QYLTCGLDR-FGPGSRIIITTR-DKWIL--------DKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 260 ~~~-~~l~~~~~~-~~~gs~IiiTTR-~~~v~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
... +.+...+.. ...|..||+||. .+.-. ..+.. .-++++++.+.+.-..++.+.+-
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~--gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM--GLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc--CceEeeCCCCHHHHHHHHHHHHH
Confidence 111 122221111 123557888874 33221 12222 45789999999999999988764
No 104
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0068 Score=59.36 Aligned_cols=144 Identities=24% Similarity=0.273 Sum_probs=85.3
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhhhhc--
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREESEK-- 250 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-- 250 (471)
..+=|.++.+++|.+.... +-+.++=|.++|++|.|||-||++|+++....| +..+.....+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgSElVqKY 225 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGSELVQKY 225 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccHHHHHHH
Confidence 4567888888888886531 224577889999999999999999999765544 3222221111
Q ss_pred ---C-------------------cccccCCH-------------h---hHHHHhcCCCCCCC--CcEEEEEeCChhhh--
Q 041795 251 ---G-------------------VLDDVNKI-------------G---QLQYLTCGLDRFGP--GSRIIITTRDKWIL-- 288 (471)
Q Consensus 251 ---~-------------------VLDdv~~~-------------~---~~~~l~~~~~~~~~--gs~IiiTTR~~~v~-- 288 (471)
| .+|.++.. + ..-+|+..++.|.+ ..+||..|-..+++
T Consensus 226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP 305 (406)
T COG1222 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP 305 (406)
T ss_pred hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence 1 45666421 1 12345555555543 57888877655443
Q ss_pred ---hhhCcCCCceEEeCCCCHHHHHHHHHhccccCC-CCCchHHHHHHHH
Q 041795 289 ---DKFGVHDTNVYEVNGLRYHEALELFCNCAFKEN-HCPSGFLASSKRV 334 (471)
Q Consensus 289 ---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~i 334 (471)
..-.. +..++++.-+.+-=.++|.=|+-+-+ ...-+++.+++..
T Consensus 306 ALLRPGR~--DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~ 353 (406)
T COG1222 306 ALLRPGRF--DRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLT 353 (406)
T ss_pred hhcCCCcc--cceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhc
Confidence 32233 56788885454444566665553222 2334566666554
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.95 E-value=0.004 Score=67.37 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc-ccc-----------------ceEeeeh-
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK-EFE-----------------GNCFLGN- 243 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~-----------------~~~~~~~- 243 (471)
...++|-+..++.|...+..+. -...+.++|+.|+||||+|+.++..+-. +.. ....+..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 3568999999999999887432 2456789999999999999999887432 110 0111221
Q ss_pred -------hhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEe-CChhhhhhh-CcCCCceEE
Q 041795 244 -------VREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITT-RDKWILDKF-GVHDTNVYE 300 (471)
Q Consensus 244 -------~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~~~ 300 (471)
+++.... + |+|+++. ...++.|+..+......+.+|++| ....+...+ .. ...++
T Consensus 96 sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR--cq~ie 173 (725)
T PRK07133 96 SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR--VQRFN 173 (725)
T ss_pred ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh--ceeEE
Confidence 1111110 1 8899863 456777776665544555555444 444443322 22 45799
Q ss_pred eCCCCHHHHHHHHHhcc
Q 041795 301 VNGLRYHEALELFCNCA 317 (471)
Q Consensus 301 l~~L~~~ea~~Lf~~~a 317 (471)
+.+++.++....+...+
T Consensus 174 F~~L~~eeI~~~L~~il 190 (725)
T PRK07133 174 FRRISEDEIVSRLEFIL 190 (725)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999888777644
No 106
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.95 E-value=0.00097 Score=66.19 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=41.8
Q ss_pred CCccccchhHHHHHHhhhcC----CCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCIG----RPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+.++|.++.++++.+++... +...++++|+|++|+||||||+.+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999999988632 234688999999999999999999887544
No 107
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.0051 Score=65.50 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=86.9
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc----------------------cccceE
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK----------------------EFEGNC 239 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~----------------------~f~~~~ 239 (471)
...+++|-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+.. +++. .
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~ 91 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-I 91 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-E
Confidence 33578999999999999887432 3457889999999999999999887532 1221 1
Q ss_pred eee--------hhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCC
Q 041795 240 FLG--------NVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDT 296 (471)
Q Consensus 240 ~~~--------~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~ 296 (471)
.+. .+++.... + |+|+++. ...++.|+..+......+.+|.+|.+. .+...+.. ..
T Consensus 92 ~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S-Rc 170 (563)
T PRK06647 92 EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS-RC 170 (563)
T ss_pred EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH-hc
Confidence 121 22221100 1 8899864 445777877776555667666666443 33222211 14
Q ss_pred ceEEeCCCCHHHHHHHHHhccc
Q 041795 297 NVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
..+++.+++.++-...+.+.+.
T Consensus 171 ~~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 171 QHFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 5689999999998888877653
No 108
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.93 E-value=0.0043 Score=69.67 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=39.5
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+.++||+.+++++.+.|.... ..-+.++|.+|+|||+||+.++.++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 569999999999999987443 234558999999999999999988644
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0044 Score=64.87 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=81.9
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc---c------------------ccceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK---E------------------FEGNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~------------------f~~~~~ 240 (471)
....++|-+..++.|.+.+..+. -.....++|..|+||||+|+.++..+.. . +.....
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 33568999999999999886432 2456778999999999999999887532 0 111122
Q ss_pred eeh--------hhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEe-CChhhhhhh-CcCCC
Q 041795 241 LGN--------VREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITT-RDKWILDKF-GVHDT 296 (471)
Q Consensus 241 ~~~--------~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~-~~~~~ 296 (471)
+.. ++..... + |+|+++. ....+.|+..+....+...+|++| +...+...+ .. .
T Consensus 93 idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR--c 170 (486)
T PRK14953 93 IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR--C 170 (486)
T ss_pred EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh--c
Confidence 221 1111000 1 8899863 345566666655444455555555 433333221 12 4
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+++.+++.++....+...+
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 578999999999887777654
No 110
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.0058 Score=60.68 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=71.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEee-----------ehhhhhhhc----
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCFL-----------GNVREESEK---- 250 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~-----------~~~~~~~~~---- 250 (471)
...+.++|+.|+||||+|+.++..+-.. .....++ +.+++....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 5578899999999999999998875321 1112222 122221111
Q ss_pred ---C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 251 ---G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 251 ---~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
+ |+|+++ +....+.|+..+.....++.+|+||.+.. +...+.. ....+.+.+++.+++.+.+...
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeCCCcCHHHHHHHHHHh
Confidence 0 789987 45567777776665556788888887753 3322211 1467999999999999888765
No 111
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.87 E-value=0.00083 Score=63.91 Aligned_cols=40 Identities=30% Similarity=0.058 Sum_probs=33.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc-cccceEeeehhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK-EFEGNCFLGNVRE 246 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~ 246 (471)
...++|+|.+|+|||||++.+++.+.. +|+..+|+..+.+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e 56 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE 56 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC
Confidence 458899999999999999999998654 6999999885544
No 112
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0077 Score=64.26 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=83.5
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc----------------------cccceE
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK----------------------EFEGNC 239 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~----------------------~f~~~~ 239 (471)
....++|.+...+.|.+.+..+. -...+.++|..|+||||+|+.+...+.. +++ ..
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~ 91 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VI 91 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eE
Confidence 34679999999999999887432 3456788999999999999999876431 122 11
Q ss_pred eeeh--------hhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEe-CChhhhhhhCcCCC
Q 041795 240 FLGN--------VREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITT-RDKWILDKFGVHDT 296 (471)
Q Consensus 240 ~~~~--------~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~ 296 (471)
.++. +++.... + |+|+++. ...++.|+..+........+|++| ....+...+.. ..
T Consensus 92 eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~S-Rc 170 (559)
T PRK05563 92 EIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILS-RC 170 (559)
T ss_pred EeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHh-Hh
Confidence 2221 1111111 1 8899874 355777776665444455555544 33333322211 14
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+++.+++.++....+...+
T Consensus 171 ~~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 171 QRFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred eEEecCCCCHHHHHHHHHHHH
Confidence 568899999999888777655
No 113
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.84 E-value=0.00059 Score=58.86 Aligned_cols=99 Identities=22% Similarity=0.203 Sum_probs=56.1
Q ss_pred cccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---ccceEeeehhhh---hhhcC--cccccCC
Q 041795 187 VGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---FEGNCFLGNVRE---ESEKG--VLDDVNK 258 (471)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---f~~~~~~~~~~~---~~~~~--VLDdv~~ 258 (471)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-... |...-....-.+ ....| +|+|++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~ 80 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDR 80 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHH
Confidence 577778888888776433344678999999999999999988763332 221110000011 11112 8899874
Q ss_pred --HhhHHHHhcCCCCC-CCCcEEEEEeCCh
Q 041795 259 --IGQLQYLTCGLDRF-GPGSRIIITTRDK 285 (471)
Q Consensus 259 --~~~~~~l~~~~~~~-~~gs~IiiTTR~~ 285 (471)
.+....|...+... ....|+|.||...
T Consensus 81 L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 81 LSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp S-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 33333333332211 4578999998754
No 114
>PRK08118 topology modulation protein; Reviewed
Probab=96.81 E-value=0.00086 Score=59.91 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=27.0
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh---ccccceEee
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY---KEFEGNCFL 241 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~ 241 (471)
.|.|+|++|+||||||+.+++.+. -+|+...|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 589999999999999999999853 346666653
No 115
>PRK06696 uridine kinase; Validated
Probab=96.80 E-value=0.0016 Score=61.19 Aligned_cols=45 Identities=24% Similarity=0.222 Sum_probs=34.7
Q ss_pred cchhHHHHHHhhhc-CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 189 LNSRIEKIKSLLCI-GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 189 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
|.+.+++|-+.+.. ......+|+|.|.+|+||||||+.+...+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45556666666543 3446789999999999999999999988754
No 116
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0087 Score=64.51 Aligned_cols=133 Identities=23% Similarity=0.296 Sum_probs=83.3
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-cc-------ceE---------------
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FE-------GNC--------------- 239 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~-------~~~--------------- 239 (471)
...++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+... .. +.|
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 3568999999999998887432 23567899999999999999998875431 10 011
Q ss_pred eee--------hhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCC
Q 041795 240 FLG--------NVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDT 296 (471)
Q Consensus 240 ~~~--------~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~ 296 (471)
.+. .+++.... + |+|+++. .+..+.|+..+........+|++|.+. .+...+.. ..
T Consensus 94 ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS-Rc 172 (620)
T PRK14948 94 EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS-RC 172 (620)
T ss_pred EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh-he
Confidence 111 11111110 0 8899874 455677776666544556555555443 33322211 14
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+++..++.++....+.+.+
T Consensus 173 ~~~~f~~l~~~ei~~~L~~ia 193 (620)
T PRK14948 173 QRFDFRRIPLEAMVQHLSEIA 193 (620)
T ss_pred eEEEecCCCHHHHHHHHHHHH
Confidence 568889999998887777655
No 117
>CHL00176 ftsH cell division protein; Validated
Probab=96.77 E-value=0.004 Score=67.14 Aligned_cols=133 Identities=26% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCCccccchhHHHHHHhhh---c-------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccc---eEe----ee---
Q 041795 183 FDGLVGLNSRIEKIKSLLC---I-------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEG---NCF----LG--- 242 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~----~~--- 242 (471)
.+++.|.++..+++.+.+. . +..-.+-+.++|++|+|||+||+.+++.....|-. .-| +.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~ 261 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGA 261 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhH
Confidence 3568898888877776543 1 11224578999999999999999998864322210 001 00
Q ss_pred -hhhhhhhc--------CcccccCCH----------------hhHHHHhcCCCCC--CCCcEEEEEeCChhhhhh-----
Q 041795 243 -NVREESEK--------GVLDDVNKI----------------GQLQYLTCGLDRF--GPGSRIIITTRDKWILDK----- 290 (471)
Q Consensus 243 -~~~~~~~~--------~VLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~----- 290 (471)
.++..... -+||+++.. ..+..|+..++.+ ..+..||.||........
T Consensus 262 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRp 341 (638)
T CHL00176 262 ARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRP 341 (638)
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcc
Confidence 00110000 167888532 1234444443322 235567777766443321
Q ss_pred hCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 291 FGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 291 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
... ...+.++..+.++-.+++..++
T Consensus 342 GRF--d~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 342 GRF--DRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred ccC--ceEEEECCCCHHHHHHHHHHHH
Confidence 112 4678888888888888887765
No 118
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.74 E-value=0.006 Score=58.74 Aligned_cols=24 Identities=42% Similarity=0.364 Sum_probs=20.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..|.|.|.+|+|||+||+.+++..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 356799999999999999998754
No 119
>PRK08116 hypothetical protein; Validated
Probab=96.73 E-value=0.0023 Score=61.70 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=27.6
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
..+.|+|.+|+|||.||.++++.+..+-..++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45889999999999999999999765533445544
No 120
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.70 E-value=0.0051 Score=56.55 Aligned_cols=47 Identities=26% Similarity=0.101 Sum_probs=29.5
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh--hhccccceEeee
Q 041795 192 RIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL--IYKEFEGNCFLG 242 (471)
Q Consensus 192 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~ 242 (471)
+-....+.|. +..++.+.|.+|.|||.||.+.+-+ ....|+..++..
T Consensus 8 ~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 8 EQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3344444444 3569999999999999999887755 245677666643
No 121
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0044 Score=66.40 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc----------------------ccceE
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE----------------------FEGNC 239 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----------------------f~~~~ 239 (471)
...+++|-+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+... .+. .
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~ 91 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV-F 91 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-e
Confidence 34578999999999998886432 24567899999999999999998875321 111 1
Q ss_pred eee--------hhhhhhhc------------CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEe-CChhhhhhhCcCCC
Q 041795 240 FLG--------NVREESEK------------GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITT-RDKWILDKFGVHDT 296 (471)
Q Consensus 240 ~~~--------~~~~~~~~------------~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~~~~~~~ 296 (471)
.+. .+++.... -|+|+++. ....+.|+..+......+.+|++| ....+...+.. ..
T Consensus 92 eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S-Rc 170 (576)
T PRK14965 92 EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS-RC 170 (576)
T ss_pred eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH-hh
Confidence 111 11111110 08899864 345667776665544566666555 43434332211 14
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+++.+++.++....+...+
T Consensus 171 ~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 171 QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred hhhhcCCCCHHHHHHHHHHHH
Confidence 568889999888877666543
No 122
>PRK07667 uridine kinase; Provisional
Probab=96.68 E-value=0.0035 Score=57.41 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=31.6
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++.+.+.+........+|+|.|.+|.||||+|+.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34555555544455689999999999999999999987654
No 123
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.64 E-value=0.0024 Score=54.15 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
-+.+.|+|.+|+|||++++.+.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 468899999999999999999998654
No 124
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.0093 Score=59.42 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=80.6
Q ss_pred ccc-cchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEee--
Q 041795 186 LVG-LNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCFL-- 241 (471)
Q Consensus 186 ~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~-- 241 (471)
++| -+..++.+...+..+ .-.....++|..|+||||+|+.+.+.+-.. +....++
T Consensus 7 i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 556 445566666666522 235577999999999999999998774321 1112222
Q ss_pred -------ehhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCceE
Q 041795 242 -------GNVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTNVY 299 (471)
Q Consensus 242 -------~~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~ 299 (471)
..+++.... + |+|+++. ....+.|+..+.....++.+|++|.+.. +...+.. ....+
T Consensus 86 ~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS-Rc~~i 164 (329)
T PRK08058 86 DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS-RCQVV 164 (329)
T ss_pred ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh-hceee
Confidence 122221110 1 8899863 4456777777766667788888876643 3222211 15679
Q ss_pred EeCCCCHHHHHHHHHhc
Q 041795 300 EVNGLRYHEALELFCNC 316 (471)
Q Consensus 300 ~l~~L~~~ea~~Lf~~~ 316 (471)
++.+++.++..+.+...
T Consensus 165 ~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 165 EFRPLPPESLIQRLQEE 181 (329)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999998878653
No 125
>PRK08181 transposase; Validated
Probab=96.63 E-value=0.0016 Score=62.71 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=26.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.-+.++|.+|+|||.||..+.+......-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999988654433445543
No 126
>PRK12377 putative replication protein; Provisional
Probab=96.62 E-value=0.0026 Score=60.50 Aligned_cols=36 Identities=28% Similarity=0.185 Sum_probs=28.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
...+.|+|.+|+|||.||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999999765544445554
No 127
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.62 E-value=0.013 Score=64.89 Aligned_cols=132 Identities=22% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeehhh
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGNVR 245 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~~~ 245 (471)
.++.|.+..+++|.+.+.. +-...+-+.++|++|+|||+||+++++.....|-.. .|+....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese 532 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESE 532 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHH
Confidence 4578888888888776541 112355689999999999999999998765443211 1222111
Q ss_pred ----hhhhc--------CcccccCCH--------------hhHHHHhcCCCCC--CCCcEEEEEeCChhhhhhh-----C
Q 041795 246 ----EESEK--------GVLDDVNKI--------------GQLQYLTCGLDRF--GPGSRIIITTRDKWILDKF-----G 292 (471)
Q Consensus 246 ----~~~~~--------~VLDdv~~~--------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~-----~ 292 (471)
..... -++|+++.. .....|+..++.. ..+.-||.||.....+... .
T Consensus 533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgR 612 (733)
T TIGR01243 533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGR 612 (733)
T ss_pred HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence 10000 177887521 1223344443322 2345566677665443211 2
Q ss_pred cCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 293 VHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 293 ~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
. +..+.++..+.++-.++|..+.
T Consensus 613 f--d~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 613 F--DRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred c--ceEEEeCCcCHHHHHHHHHHHh
Confidence 2 5678899999888888887554
No 128
>PRK10536 hypothetical protein; Provisional
Probab=96.62 E-value=0.0043 Score=58.81 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh-h-hccccce
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL-I-YKEFEGN 238 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~ 238 (471)
..+.++......+...|.. ...+.+.|..|.|||+||.++... + .+.|+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI 107 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRI 107 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence 4567788888888887753 248999999999999999998774 3 3445433
No 129
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.60 E-value=0.0073 Score=53.63 Aligned_cols=115 Identities=22% Similarity=0.199 Sum_probs=64.8
Q ss_pred cchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc--------------------cccceEeeehhhh--
Q 041795 189 LNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK--------------------EFEGNCFLGNVRE-- 246 (471)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~f~~~~~~~~~~~-- 246 (471)
-+...+.|.+.+..+ .-...+.++|..|+||+++|..+++.+-. ......++.....
T Consensus 2 q~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 2 QEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp -HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred cHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 344556666666522 22457899999999999999999886322 1223334432211
Q ss_pred ---------hhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCceEEeC
Q 041795 247 ---------ESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTNVYEVN 302 (471)
Q Consensus 247 ---------~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~ 302 (471)
.... + |+||++. .+..+.|+..+.....++++|++|.+.. +...+.. ....+.++
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S-Rc~~i~~~ 159 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRS-RCQVIRFR 159 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT-TSEEEEE-
T ss_pred hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh-hceEEecC
Confidence 1110 0 8999974 5567777777766677899999988765 3322211 14456666
Q ss_pred CCC
Q 041795 303 GLR 305 (471)
Q Consensus 303 ~L~ 305 (471)
+|+
T Consensus 160 ~ls 162 (162)
T PF13177_consen 160 PLS 162 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 130
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.60 E-value=0.0067 Score=67.49 Aligned_cols=52 Identities=29% Similarity=0.447 Sum_probs=39.9
Q ss_pred CCccccchhHHHHHHhhhc----CCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 184 DGLVGLNSRIEKIKSLLCI----GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
...+|.+..+++|.+++.. +.....++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3478988888888886641 222345899999999999999999998865443
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.59 E-value=0.011 Score=65.49 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHhhhcC------C-CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIG------R-PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|-+..++.+.+.+... . ....++.++|++|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 56789998888888776521 1 1244789999999999999999988763
No 132
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0022 Score=55.80 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=28.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhcc-ccceEeee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNCFLG 242 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 242 (471)
--|+|.||+|+|||||++.+.+.++.. |...-|++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 468999999999999999999997766 77655543
No 133
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.0022 Score=60.81 Aligned_cols=53 Identities=26% Similarity=0.337 Sum_probs=42.2
Q ss_pred CCCccccchhHHHHHHhhhc---CCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 183 FDGLVGLNSRIEKIKSLLCI---GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
-.+|+|-+..+++|.=.+.. ....+--+.++|++|.||||||..+++.+..++
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 35799999888888766652 234477899999999999999999999866544
No 134
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0026 Score=67.41 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=43.9
Q ss_pred CCccccchhHHHHHHhhhc----CCCCceEEEEeccCcchhhhHHHHHHHhhhcccc
Q 041795 184 DGLVGLNSRIEKIKSLLCI----GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE 236 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 236 (471)
.+-+|.++..++|.++|.- ..-.-++++++|++|+|||.|++.++..+...|-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 3558999999999999862 2233579999999999999999999998777663
No 135
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.012 Score=61.89 Aligned_cols=148 Identities=20% Similarity=0.222 Sum_probs=86.2
Q ss_pred CCccccchhHHHHHHhhh-----------cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeehhh
Q 041795 184 DGLVGLNSRIEKIKSLLC-----------IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGNVR 245 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~~~ 245 (471)
+++-|.++.+.+|.+... .+-+..+-|.++|++|+|||++|+++++.-...|=.+ -|+..+.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSE 513 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESE 513 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchH
Confidence 345567777777775443 1235578899999999999999999999766665432 3443222
Q ss_pred hh----hhc--------CcccccCCH-------------hhHHHHhcCCCCCCCCcEEEE---EeCChhhhhh----hCc
Q 041795 246 EE----SEK--------GVLDDVNKI-------------GQLQYLTCGLDRFGPGSRIII---TTRDKWILDK----FGV 293 (471)
Q Consensus 246 ~~----~~~--------~VLDdv~~~-------------~~~~~l~~~~~~~~~gs~Iii---TTR~~~v~~~----~~~ 293 (471)
.. ..+ ..||.++.. ..+..|+..++.......|+| |-|...+-.. -..
T Consensus 514 r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRl 593 (693)
T KOG0730|consen 514 RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRL 593 (693)
T ss_pred HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCccc
Confidence 11 111 056666421 234556666664444444554 3343222211 112
Q ss_pred CCCceEEeCCCCHHHHHHHHHhccccCCC-CCchHHHHHHH
Q 041795 294 HDTNVYEVNGLRYHEALELFCNCAFKENH-CPSGFLASSKR 333 (471)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~l~~~ 333 (471)
+..+.++.-+.+--.++|..++-+-.- +.-++.+|+..
T Consensus 594 --D~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 594 --DRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQA 632 (693)
T ss_pred --ceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 567888888888888999888743222 12245666653
No 136
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.023 Score=57.31 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=41.9
Q ss_pred CCCCccccchhHHHHHHhhhc--CCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI--GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.++.+.+|+++++++...|.. .+....-+.|+|.+|+|||+.++.+.+++...
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 345599999999999988762 22223348999999999999999999986654
No 137
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.018 Score=58.32 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=70.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccc--eEeeehhh----------h--------hhhc--CcccccCCH---h
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEG--NCFLGNVR----------E--------ESEK--GVLDDVNKI---G 260 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~----------~--------~~~~--~VLDdv~~~---~ 260 (471)
.-..+-|+|..|.|||.|++++.+........ +.++.... + .... -++||+.-. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKE 191 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCCh
Confidence 46789999999999999999999997766552 33333211 1 1101 278998521 1
Q ss_pred hH-HHHhcCCCC-CCCCcEEEEEeCCh---------hhhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 261 QL-QYLTCGLDR-FGPGSRIIITTRDK---------WILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 261 ~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.+ +.+...++. ...|..||+|++.. .+...+.. .-++++.+++.+....++.+.+-
T Consensus 192 ~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~--Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 192 RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW--GLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc--eeEEeeCCCCHHHHHHHHHHHHH
Confidence 11 222222211 12355899998643 34444444 57899999999999999988664
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.47 E-value=0.019 Score=63.62 Aligned_cols=52 Identities=33% Similarity=0.399 Sum_probs=40.2
Q ss_pred CCCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 183 FDGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.+++.|.+..++++.+++.. +-...+-+.++|.+|+|||+||+.+++.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 34588999999999887641 11235678999999999999999999876543
No 139
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.46 E-value=0.0032 Score=65.93 Aligned_cols=50 Identities=26% Similarity=0.340 Sum_probs=41.5
Q ss_pred CCccccchhHHHHHHhhh----cCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLC----IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.+++|.++.++++.+.|. ..+..-+++.++|++|+||||||+.+++.+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 468999999999999883 22345679999999999999999999886544
No 140
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0034 Score=56.43 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=31.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
...+|.++|+.|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3569999999999999999999999887777777774
No 141
>PRK09183 transposase/IS protein; Provisional
Probab=96.43 E-value=0.0026 Score=61.13 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+.|+|.+|+|||+||..+++..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998764
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.032 Score=58.17 Aligned_cols=133 Identities=23% Similarity=0.302 Sum_probs=87.6
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc------cccceEeee--------------
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK------EFEGNCFLG-------------- 242 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~-------------- 242 (471)
.+++||-+...+.|...|..+. -..--...|.-|+||||+|+.++..+-. ..-+.|-.+
T Consensus 15 F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhh
Confidence 3568999999999999887432 2445678999999999999999876321 122333321
Q ss_pred ---------hhhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCChh-hhh-hhCcCCCc
Q 041795 243 ---------NVREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDKW-ILD-KFGVHDTN 297 (471)
Q Consensus 243 ---------~~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~-~~~~~~~~ 297 (471)
++++.... + ++|.|. ....|+.|+.-+.........|+.|.+.+ +.. .... ..
T Consensus 94 DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSR--cq 171 (515)
T COG2812 94 DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR--CQ 171 (515)
T ss_pred hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhc--cc
Confidence 11221111 0 889886 45678888887766566666666665543 222 2222 56
Q ss_pred eEEeCCCCHHHHHHHHHhccc
Q 041795 298 VYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.|.++.|+.++-...+...+-
T Consensus 172 ~f~fkri~~~~I~~~L~~i~~ 192 (515)
T COG2812 172 RFDFKRLDLEEIAKHLAAILD 192 (515)
T ss_pred cccccCCCHHHHHHHHHHHHH
Confidence 799999999988887777663
No 143
>PRK06921 hypothetical protein; Provisional
Probab=96.42 E-value=0.0029 Score=60.98 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=28.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc-ccceEeee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNCFLG 242 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 242 (471)
...+.++|..|+|||.||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999986654 33345554
No 144
>PRK06526 transposase; Provisional
Probab=96.39 E-value=0.002 Score=61.54 Aligned_cols=26 Identities=35% Similarity=0.157 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..-+.|+|.+|+|||+||..+.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 35689999999999999999988743
No 145
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.36 E-value=0.012 Score=65.25 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=41.2
Q ss_pred CCccccchhHHHHHHhhhc----CCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 184 DGLVGLNSRIEKIKSLLCI----GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
.+.+|.++.+++|.++|.. +......+.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4579999999999988862 122356899999999999999999998754443
No 146
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.35 E-value=0.0028 Score=52.08 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=22.1
Q ss_pred EEEeccCcchhhhHHHHHHHhhhccc
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
|-|+|.+|+|||+||..++..+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 45899999999999999988876554
No 147
>PRK07261 topology modulation protein; Provisional
Probab=96.31 E-value=0.0027 Score=56.99 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999987663
No 148
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.30 E-value=0.0016 Score=58.73 Aligned_cols=36 Identities=33% Similarity=0.264 Sum_probs=24.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
..-+.++|.+|+|||.||..+.+....+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356899999999999999999987444322344443
No 149
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.29 E-value=0.0028 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEeccCcchhhhHHHHHHHhh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~ 231 (471)
|+|.|.+|+||||||+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998875
No 150
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.26 E-value=0.0031 Score=53.27 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=21.9
Q ss_pred EEEeccCcchhhhHHHHHHHhhhcc
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
|.|+|.+|+|||++|+.+++....+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc
Confidence 5799999999999999999987533
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.026 Score=55.72 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=84.2
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------ccceEeeeh-----
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------FEGNCFLGN----- 243 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------f~~~~~~~~----- 243 (471)
.+++|-+..++.+.+.+..+. -.....++|..|+||+++|..+++.+-.. ++...|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 458899999999998886432 24689999999999999999998874221 222233321
Q ss_pred --------------------------hhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeC
Q 041795 244 --------------------------VREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTR 283 (471)
Q Consensus 244 --------------------------~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR 283 (471)
+++.... + |+|+++. ....+.|+..+...+ .+.+|++|.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 1111110 0 8888863 445666666655444 445555554
Q ss_pred Ch-hhhhhhCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 284 DK-WILDKFGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 284 ~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
+. .+...+.. ....+++++++.++..+.+.+..
T Consensus 162 ~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 162 SPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhh
Confidence 43 33333221 15679999999999999988764
No 152
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.25 E-value=0.0033 Score=57.61 Aligned_cols=25 Identities=48% Similarity=0.732 Sum_probs=22.9
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+|+|.|.+|+||||+|+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999988764
No 153
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.25 E-value=0.005 Score=61.08 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=27.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.-+.++|.+|+|||.||.++++.+...--.+.|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999998654433445543
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.23 E-value=0.03 Score=62.85 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHhhhcC------CC-CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIG------RP-DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|-+..++.+...+... .+ ...++.++|..|+|||+||+.+++...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 46889999988888877521 11 235789999999999999999987653
No 155
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.17 E-value=0.0044 Score=62.39 Aligned_cols=39 Identities=21% Similarity=-0.012 Sum_probs=33.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc-ccceEeeehhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNCFLGNVR 245 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~ 245 (471)
-..++|+|.+|.|||||++.+++.+... |+..+|+..+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIg 207 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLID 207 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcC
Confidence 4579999999999999999999986655 99999998553
No 156
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.17 E-value=0.048 Score=57.07 Aligned_cols=133 Identities=20% Similarity=0.146 Sum_probs=73.1
Q ss_pred CCccccchhHHHHHHhhh--------cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeeh----h
Q 041795 184 DGLVGLNSRIEKIKSLLC--------IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGN----V 244 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~----~ 244 (471)
+++.|.+..++.+.+... .+-...+-|.++|++|+|||.+|+.+++...-.|-.. -|+.. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l 307 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM 307 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH
Confidence 567787766666654221 1123467799999999999999999998754322100 01111 1
Q ss_pred hhhhhc------C--cccccCCHh--------------hHHHHhcCCCCCCCCcEEEEEeCChhhh-----hhhCcCCCc
Q 041795 245 REESEK------G--VLDDVNKIG--------------QLQYLTCGLDRFGPGSRIIITTRDKWIL-----DKFGVHDTN 297 (471)
Q Consensus 245 ~~~~~~------~--VLDdv~~~~--------------~~~~l~~~~~~~~~gs~IiiTTR~~~v~-----~~~~~~~~~ 297 (471)
++.... . ++|+++... .+..++..+.....+.-||.||.+...+ ..... +.
T Consensus 308 ~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRF--D~ 385 (489)
T CHL00195 308 RQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRF--DE 385 (489)
T ss_pred HHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcC--Ce
Confidence 111100 0 577775210 1122222222223344566677655422 21123 56
Q ss_pred eEEeCCCCHHHHHHHHHhccc
Q 041795 298 VYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.+.++..+.++-.++|..+.-
T Consensus 386 ~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 386 IFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred EEEeCCcCHHHHHHHHHHHHh
Confidence 788999999988888887653
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.14 E-value=0.031 Score=62.90 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHhhhcC------CC-CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIG------RP-DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|.+..++.+...+... .+ ...++.++|++|+|||+||+.+.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46899999999998877631 11 245788999999999999999998653
No 158
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.021 Score=56.83 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=45.2
Q ss_pred cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 252 VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 252 VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
|+|+++ +....+.|+..+....+++.+|++|.+. .++..+.. ....+.+++++.++..+.+...
T Consensus 137 iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 137 VLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHc
Confidence 788886 4566778887777666788777766654 44433221 1467999999999999888765
No 159
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.014 Score=59.74 Aligned_cols=108 Identities=25% Similarity=0.284 Sum_probs=65.2
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhhhhc-------------------------CcccccCCH
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREESEK-------------------------GVLDDVNKI 259 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-------------------------~VLDdv~~~ 259 (471)
.....+.+.|.+|+|||+||..++.. ..|+.+--+ +..... .|+||+...
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKii---Spe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErL 610 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKII---SPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERL 610 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEe---ChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhh
Confidence 34778899999999999999998753 334422222 111111 188888533
Q ss_pred hhH------------HHHhcCCCCCC-CCcEE--EEEeCChhhhhhhCcCC--CceEEeCCCCH-HHHHHHHHhcc
Q 041795 260 GQL------------QYLTCGLDRFG-PGSRI--IITTRDKWILDKFGVHD--TNVYEVNGLRY-HEALELFCNCA 317 (471)
Q Consensus 260 ~~~------------~~l~~~~~~~~-~gs~I--iiTTR~~~v~~~~~~~~--~~~~~l~~L~~-~ea~~Lf~~~a 317 (471)
-+| +.|+-.+.... .|-|. +-||-...++..++..+ ...|+++.++. ++....++..-
T Consensus 611 iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 611 LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN 686 (744)
T ss_pred hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc
Confidence 222 23322222222 34444 44777788888776421 45789999987 67777776543
No 160
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.07 E-value=0.0045 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.0
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986544
No 161
>PRK06762 hypothetical protein; Provisional
Probab=96.06 E-value=0.0051 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+|.|+|++|+||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 162
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.03 E-value=0.0058 Score=56.60 Aligned_cols=26 Identities=42% Similarity=0.641 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998876
No 163
>PRK08233 hypothetical protein; Provisional
Probab=96.03 E-value=0.0052 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+|+|.|.+|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988753
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.02 E-value=0.0081 Score=61.43 Aligned_cols=45 Identities=29% Similarity=0.283 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577888888888888863 34688899999999999999998764
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.02 E-value=0.0064 Score=51.27 Aligned_cols=28 Identities=36% Similarity=0.328 Sum_probs=24.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
..+.|+|.+|+||||+|+.++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999998866554
No 166
>PRK03839 putative kinase; Provisional
Probab=96.01 E-value=0.005 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.6
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|.|.|++|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 167
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.00 E-value=0.017 Score=48.69 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=51.1
Q ss_pred EEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccC
Q 041795 14 VSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKH 76 (471)
Q Consensus 14 vFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 76 (471)
|||-|. .| ..+++.+...|+..|+.+.+=......|..+.+.+.+.+.+++.+|+++||+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899997 66 5589999999998888765433355889999999999999999999999984
No 168
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0076 Score=63.83 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=43.6
Q ss_pred CCccccchhHHHHHHhhh----cCCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 184 DGLVGLNSRIEKIKSLLC----IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
++-+|+++.++++.+.+. .++.+-++++.+|++|+|||.+|+.|+..+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 345899999999999886 2344578999999999999999999999876654
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.99 E-value=0.025 Score=53.09 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=40.6
Q ss_pred CCCCccccchhHHHHHHhhh--cCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 182 NFDGLVGLNSRIEKIKSLLC--IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..+.++|.+..++.|.+-.. ..+....-+.++|..|.|||+|++++.+.+..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 44679999999999887543 12334566788999999999999999987654
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.023 Score=56.11 Aligned_cols=123 Identities=24% Similarity=0.194 Sum_probs=73.1
Q ss_pred ccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc---------------------cceEeeeh-
Q 041795 186 LVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF---------------------EGNCFLGN- 243 (471)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~~~~- 243 (471)
++|-+....++..+..........+.++|++|+||||+|..+++.+.... +....+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 56667777777777764433344699999999999999999998865322 22222221
Q ss_pred -----------hhhhhhc-------C-----cccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCc
Q 041795 244 -----------VREESEK-------G-----VLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTN 297 (471)
Q Consensus 244 -----------~~~~~~~-------~-----VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~ 297 (471)
+++.... + ++|+++.. +.-+.+...+......+++|++|.+.. +...+.. ...
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S-Rc~ 161 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS-RCQ 161 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhh-cce
Confidence 1111111 0 78998753 345666666665567888888887442 2222211 134
Q ss_pred eEEeCCCCHHHH
Q 041795 298 VYEVNGLRYHEA 309 (471)
Q Consensus 298 ~~~l~~L~~~ea 309 (471)
.+++++.+..+.
T Consensus 162 ~i~f~~~~~~~~ 173 (325)
T COG0470 162 RIRFKPPSRLEA 173 (325)
T ss_pred eeecCCchHHHH
Confidence 566766444433
No 171
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.95 E-value=0.007 Score=56.02 Aligned_cols=28 Identities=43% Similarity=0.603 Sum_probs=24.3
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+...+|+|+|.+|+||||||+.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999987654
No 172
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.94 E-value=0.011 Score=55.75 Aligned_cols=31 Identities=39% Similarity=0.478 Sum_probs=26.4
Q ss_pred CCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 204 RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.....+++|.|.+|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3457899999999999999999998876543
No 173
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.93 E-value=0.023 Score=63.64 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHhhhc-------CCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCI-------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|-+..++.+.+.+.. ......++.++|++|+|||.||+.++..+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999888887642 112355789999999999999999887753
No 174
>PTZ00301 uridine kinase; Provisional
Probab=95.91 E-value=0.0061 Score=56.50 Aligned_cols=29 Identities=28% Similarity=0.545 Sum_probs=24.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
..+|||.|.+|+||||||+.+.+.+...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 36899999999999999999988765443
No 175
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.91 E-value=0.06 Score=55.47 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+|.++|.+|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999998876543
No 176
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.89 E-value=0.006 Score=45.73 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 177
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.87 E-value=0.035 Score=53.70 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+++.++|.+|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999988776543
No 178
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.86 E-value=0.01 Score=52.00 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=29.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.+|-|.|++|.||||||+++...+...-....+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58899999999999999999999877665566654
No 179
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.86 E-value=0.011 Score=54.58 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=34.5
Q ss_pred hhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeeh
Q 041795 199 LLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGN 243 (471)
Q Consensus 199 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 243 (471)
+|..+-..-.++.|+|.+|+|||++|.+++......-...+|++.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344344556899999999999999999988876555566777763
No 180
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.81 E-value=0.016 Score=54.24 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.8
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeeh
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGN 243 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 243 (471)
.|.++|..+-..-.++.|+|.+|+|||+||.+++......-..++|++.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4555555444556799999999999999999998876555566777763
No 181
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.81 E-value=0.0074 Score=53.79 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...|.|+|++|+||||+|+.++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 182
>PRK00625 shikimate kinase; Provisional
Probab=95.79 E-value=0.0067 Score=54.45 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=21.2
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|.|+||+|+||||+++.+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988753
No 183
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.78 E-value=0.034 Score=56.81 Aligned_cols=99 Identities=24% Similarity=0.243 Sum_probs=66.9
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhccccceEeee--hh--------------hhhhh--c--CcccccCCHhhHHHHhcC
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG--NV--------------REESE--K--GVLDDVNKIGQLQYLTCG 268 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~--~~--------------~~~~~--~--~VLDdv~~~~~~~~l~~~ 268 (471)
++.|.|+-++|||||++.+....... .+++. +. .+... + -+||.|.....|+..+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~ 115 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKY 115 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHH
Confidence 99999999999999997777665444 22221 00 00000 0 189999998899887777
Q ss_pred CCCCCCCcEEEEEeCChhhhhhhC----cCCCceEEeCCCCHHHHHH
Q 041795 269 LDRFGPGSRIIITTRDKWILDKFG----VHDTNVYEVNGLRYHEALE 311 (471)
Q Consensus 269 ~~~~~~gs~IiiTTR~~~v~~~~~----~~~~~~~~l~~L~~~ea~~ 311 (471)
+-..++. +|++|+-+..+..... ++....+++-||+..|-..
T Consensus 116 l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 116 LYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred HHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 6655555 8899887765443211 1125679999999999865
No 184
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.77 E-value=0.024 Score=52.10 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=22.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.+|.|+|..|.||||++..+...+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 378999999999999999887765433
No 185
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.77 E-value=0.018 Score=53.61 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
..|..+|..+-..-.++.|.|.+|+||||||.+++.....+=..++|++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455556544455789999999999999999999887654434455664
No 186
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.77 E-value=0.0072 Score=50.88 Aligned_cols=31 Identities=39% Similarity=0.408 Sum_probs=21.6
Q ss_pred EEEeccCcchhhhHHHHHHHhhhccccceEe
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF 240 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 240 (471)
|.|.|.+|+||||+|+.++..+...|.-+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999998888865444
No 187
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.76 E-value=0.043 Score=56.19 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+|.++|.+|+||||+|..++..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999988765543
No 188
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.71 E-value=0.05 Score=53.88 Aligned_cols=50 Identities=32% Similarity=0.353 Sum_probs=41.7
Q ss_pred CCCCccccchhHHHHHHhhhcCCCC-ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPD-FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+++.+|+.+++.+..++...+.. +..|-|+|..|.|||.+.+.+++..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 3467899999999999999765544 4455899999999999999999875
No 189
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.68 E-value=0.098 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 35688999999999999988865
No 190
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.012 Score=54.15 Aligned_cols=30 Identities=37% Similarity=0.460 Sum_probs=26.8
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..+.+|||-|.+|.||||+|+.+++.+..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346899999999999999999999988866
No 191
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.66 E-value=0.0091 Score=54.02 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+.++|.|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998654
No 192
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.65 E-value=0.038 Score=61.95 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHhhhc------CC-CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCI------GR-PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~------~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|-+..++.+...+.. .. .....+.++|+.|+|||+||+.+++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5688999888888776642 11 1245678999999999999999988753
No 193
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.023 Score=56.44 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=63.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc----------------------ccceEeee------------------hhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE----------------------FEGNCFLG------------------NVRE 246 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~----------------------f~~~~~~~------------------~~~~ 246 (471)
...+.++|+.|+||||+|+.++..+... .....++. .+++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 4578899999999999999998874311 01111221 1121
Q ss_pred hhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCceEEeCCCCHHHHHH
Q 041795 247 ESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTNVYEVNGLRYHEALE 311 (471)
Q Consensus 247 ~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~ 311 (471)
.... + ++|+++ +....+.++..+.....++.+|++|.+.. +...+.. ....+.+.+++.+++.+
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~S-Rc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKS-RCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHH-HhhhhcCCCCCHHHHHH
Confidence 1111 0 455554 33444445444443334566777887754 3322211 14678999999999988
Q ss_pred HHHhc
Q 041795 312 LFCNC 316 (471)
Q Consensus 312 Lf~~~ 316 (471)
.+...
T Consensus 180 ~L~~~ 184 (325)
T PRK08699 180 YLRER 184 (325)
T ss_pred HHHhc
Confidence 77654
No 194
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.59 E-value=0.012 Score=60.88 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++||++.++.+...+..+ .-|.|.|.+|+|||+||+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 45899999999888877644 3588999999999999999988643
No 195
>PRK04040 adenylate kinase; Provisional
Probab=95.56 E-value=0.012 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|+|+|++|+||||+++.+.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999988874
No 196
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.011 Score=56.56 Aligned_cols=28 Identities=39% Similarity=0.287 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...-+.++|.+|+|||.||.++.+.+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~ 131 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK 131 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4567899999999999999999999774
No 197
>PRK13947 shikimate kinase; Provisional
Probab=95.54 E-value=0.0093 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
-|.|+|++|+||||+|+.+.+.+.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987643
No 198
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.52 E-value=0.018 Score=51.73 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+|.|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999988643
No 199
>PRK06547 hypothetical protein; Provisional
Probab=95.51 E-value=0.012 Score=52.68 Aligned_cols=26 Identities=46% Similarity=0.469 Sum_probs=23.4
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999876
No 200
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.092 Score=49.05 Aligned_cols=142 Identities=24% Similarity=0.311 Sum_probs=80.1
Q ss_pred cc-ccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhhhhc---
Q 041795 186 LV-GLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREESEK--- 250 (471)
Q Consensus 186 ~v-Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~--- 250 (471)
++ |.+..+++|.+.+.. +-..++=+.++|++|.|||-||+++++. ..+.|+..+.....+
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~firvsgselvqk~i 222 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGSELVQKYI 222 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEEechHHHHHHHh
Confidence 44 457777777776542 2234677899999999999999999873 334444443332222
Q ss_pred --C-------------------cccccCCH-------------h---hHHHHhcCCCCCC--CCcEEEEEeCChhhhhh-
Q 041795 251 --G-------------------VLDDVNKI-------------G---QLQYLTCGLDRFG--PGSRIIITTRDKWILDK- 290 (471)
Q Consensus 251 --~-------------------VLDdv~~~-------------~---~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~- 290 (471)
| ..|.+++. + ..-.|+..++.|. +.-++|..|..-+++..
T Consensus 223 gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a 302 (404)
T KOG0728|consen 223 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 302 (404)
T ss_pred hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHh
Confidence 1 44655421 1 1123444454443 46778887765444332
Q ss_pred ----hCcCCCceEEeCCCCHHHHHHHHHhccccCC-CCCchHHHHHHHH
Q 041795 291 ----FGVHDTNVYEVNGLRYHEALELFCNCAFKEN-HCPSGFLASSKRV 334 (471)
Q Consensus 291 ----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~i 334 (471)
-.. +.-++.++-+.+.-.+++.-+.-+-+ ...-++..+++++
T Consensus 303 llrpgri--drkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 303 LLRPGRI--DRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred hcCCCcc--cccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 222 45677777776666666665442211 1123566666665
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.43 E-value=0.019 Score=56.45 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=24.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.+-+.|+|..|+|||.||.++++.+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999986543
No 202
>PHA00729 NTP-binding motif containing protein
Probab=95.43 E-value=0.02 Score=53.30 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+...|.|.|.+|+||||||..+.+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999988753
No 203
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.40 E-value=0.022 Score=52.35 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=28.3
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
+...+|+|+|++|+||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3567999999999999999999998764432234444
No 204
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.40 E-value=0.059 Score=53.29 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999998876543
No 205
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.39 E-value=0.021 Score=48.76 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.-.+|.+.|.-|.|||||++.++..+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999998864
No 206
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.12 Score=51.20 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=75.8
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEee----------e
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCFL----------G 242 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~----------~ 242 (471)
+.|.+.+..+ .-.....+.|+.|+||+++|..++..+-.. .+...++ +
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id 90 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVD 90 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHH
Confidence 3444544422 124577899999999999999998864321 0111122 1
Q ss_pred hhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCceEEeCCCCHH
Q 041795 243 NVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTNVYEVNGLRYH 307 (471)
Q Consensus 243 ~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ 307 (471)
.+++.... | |+|+++. ....+.|+..+.....++.+|++|.+. .++..+.. ....+.+.+++.+
T Consensus 91 ~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~~~~~~ 169 (325)
T PRK06871 91 QVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIHPPEEQ 169 (325)
T ss_pred HHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCCCCCHH
Confidence 12211110 1 7899874 456777777776666788888888765 33333211 1467999999999
Q ss_pred HHHHHHHhcc
Q 041795 308 EALELFCNCA 317 (471)
Q Consensus 308 ea~~Lf~~~a 317 (471)
+..+.+....
T Consensus 170 ~~~~~L~~~~ 179 (325)
T PRK06871 170 QALDWLQAQS 179 (325)
T ss_pred HHHHHHHHHh
Confidence 9998887653
No 207
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.37 E-value=0.012 Score=50.60 Aligned_cols=23 Identities=48% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEeccCcchhhhHHHHHHHhhh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
|.|+|.+|+|||+||+.++..+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998763
No 208
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.37 E-value=0.01 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|.|+|++|+||||+|+.++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998765
No 209
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.29 Score=53.17 Aligned_cols=136 Identities=22% Similarity=0.216 Sum_probs=78.6
Q ss_pred CCCCccccchhHHHHHHhhh----------cCCCCceEEEEeccCcchhhhHHHHHHHhhh--------ccccceEeee-
Q 041795 182 NFDGLVGLNSRIEKIKSLLC----------IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY--------KEFEGNCFLG- 242 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~f~~~~~~~- 242 (471)
...++.|.++..++|.+... .+..-++=+.++|++|.|||-||++++-.-. .+|-...+-.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~ 388 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG 388 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc
Confidence 34678999887777766443 1223377889999999999999999976311 1121111110
Q ss_pred --hhhhhhhcC--------cccccC-----------------CHhhHHHHhcCCCCCCCCcEEEE--EeCChhhhhh---
Q 041795 243 --NVREESEKG--------VLDDVN-----------------KIGQLQYLTCGLDRFGPGSRIII--TTRDKWILDK--- 290 (471)
Q Consensus 243 --~~~~~~~~~--------VLDdv~-----------------~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~--- 290 (471)
.+++..... .+|+++ ....+++|+..++.+..++.+|+ +|...+++..
T Consensus 389 asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all 468 (774)
T KOG0731|consen 389 ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL 468 (774)
T ss_pred hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc
Confidence 111111100 223321 12346778777776665544443 5655544432
Q ss_pred --hCcCCCceEEeCCCCHHHHHHHHHhcccc
Q 041795 291 --FGVHDTNVYEVNGLRYHEALELFCNCAFK 319 (471)
Q Consensus 291 --~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 319 (471)
-.. +..+.++.-+...-.++|.-|+-+
T Consensus 469 rpGRf--dr~i~i~~p~~~~r~~i~~~h~~~ 497 (774)
T KOG0731|consen 469 RPGRF--DRQIQIDLPDVKGRASILKVHLRK 497 (774)
T ss_pred CCCcc--ccceeccCCchhhhHHHHHHHhhc
Confidence 122 566778888888888888877743
No 210
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.31 E-value=0.017 Score=52.12 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=22.2
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999887653
No 211
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.28 E-value=0.014 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987643
No 212
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.27 E-value=0.018 Score=51.43 Aligned_cols=45 Identities=31% Similarity=0.299 Sum_probs=33.5
Q ss_pred ccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 186 LVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
++|.+..++++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877643333456779999999999999999985
No 213
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.22 E-value=0.012 Score=54.03 Aligned_cols=23 Identities=48% Similarity=0.739 Sum_probs=20.8
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987765
No 214
>PRK06217 hypothetical protein; Validated
Probab=95.18 E-value=0.014 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|.|.+|.||||||+++...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 215
>PRK14974 cell division protein FtsY; Provisional
Probab=95.17 E-value=0.095 Score=52.13 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+|+++|++|+||||++..++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999888876554
No 216
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.17 E-value=0.016 Score=50.03 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=26.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh-ccccceEeee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY-KEFEGNCFLG 242 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 242 (471)
++|.|+|..|+|||||++.+.+.+. ..+...+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4799999999999999999999866 4455544443
No 217
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.17 E-value=0.025 Score=53.38 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=26.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEG 237 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 237 (471)
....|.++||+|.||||..+.++..+...+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 46688999999999999999999887666543
No 218
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.15 E-value=0.033 Score=52.09 Aligned_cols=48 Identities=27% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc------cceEeee
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF------EGNCFLG 242 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 242 (471)
.|.++|..+-..-.++.|+|.+|+|||+||..++......- ..++|++
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44555544445567999999999999999999877654333 4456665
No 219
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.15 E-value=0.013 Score=54.84 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.8
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|||.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999988765
No 220
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.064 Score=58.45 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHhhhc-------CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCI-------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++|-+..++.+.+.+.. .+....+....|+.|+|||.||+.++..+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg 547 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG 547 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC
Confidence 4688998888888776642 1233678889999999999999999987543
No 221
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.13 E-value=0.013 Score=53.14 Aligned_cols=23 Identities=48% Similarity=0.706 Sum_probs=21.0
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|+|.|.+|+||||||+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 222
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.024 Score=61.72 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+.++||+++++++.+.|.....+-+ .++|.+|+|||+++.-++.++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999985443332 3689999999999998888743
No 223
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.10 E-value=0.016 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+++|+|++|+|||||++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999887643
No 224
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.07 E-value=0.026 Score=50.51 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987654
No 225
>PRK13949 shikimate kinase; Provisional
Probab=95.07 E-value=0.016 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.6
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|.|+|++|.||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998754
No 226
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.07 E-value=0.15 Score=50.35 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=73.4
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc------------------ccceEee-------------
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE------------------FEGNCFL------------- 241 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------f~~~~~~------------- 241 (471)
.+.+...+..+ .-...+.+.|..|+||+++|..++..+-.. .....|+
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~ 91 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRT 91 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccc
Confidence 34444444322 224578899999999999999988764221 1112233
Q ss_pred ----ehhhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCceEEeC
Q 041795 242 ----GNVREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTNVYEVN 302 (471)
Q Consensus 242 ----~~~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~ 302 (471)
+.+++.... + |+|+++. ...-+.|+..+.....++.+|++|.+. .++..+.. ....+.+.
T Consensus 92 ~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~ 170 (319)
T PRK08769 92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFK 170 (319)
T ss_pred cccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCC
Confidence 111111110 1 8899874 445666766666556678787777654 33333211 14678999
Q ss_pred CCCHHHHHHHHHhc
Q 041795 303 GLRYHEALELFCNC 316 (471)
Q Consensus 303 ~L~~~ea~~Lf~~~ 316 (471)
+++.+++.+.+...
T Consensus 171 ~~~~~~~~~~L~~~ 184 (319)
T PRK08769 171 LPPAHEALAWLLAQ 184 (319)
T ss_pred CcCHHHHHHHHHHc
Confidence 99999998888653
No 227
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.04 E-value=0.34 Score=45.21 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=43.8
Q ss_pred CCCCccccchhHHHHHHhhh--cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccce
Q 041795 182 NFDGLVGLNSRIEKIKSLLC--IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN 238 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 238 (471)
.-..++|.+...+.|.+-.. ..+-...-|.+||--|+|||.|.+++.+.+....-..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL 116 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRL 116 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeE
Confidence 44568999999998877443 2233456788999999999999999999887765543
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.03 E-value=0.056 Score=54.49 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++|+++|.+|+||||++..++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3579999999999999999999876543
No 229
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.02 E-value=0.017 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.2
Q ss_pred EEEeccCcchhhhHHHHHHHhh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~ 231 (471)
|.|+|++|.||||+|+.+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998775
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.01 E-value=0.028 Score=51.59 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
++++.++|+.|+||||.+.+++.....+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4689999999999999999988876554
No 231
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.00 E-value=0.037 Score=53.14 Aligned_cols=47 Identities=30% Similarity=0.215 Sum_probs=38.2
Q ss_pred HhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehh
Q 041795 198 SLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNV 244 (471)
Q Consensus 198 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 244 (471)
+.|..+-+.-+++.|.|.+|+|||++|.++......+.+.++|+...
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 34444446678999999999999999999999988888888888733
No 232
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.00 E-value=0.016 Score=49.93 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 233
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.99 E-value=0.053 Score=57.44 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 56899999999999888754445567899999999999999999875
No 234
>PRK13948 shikimate kinase; Provisional
Probab=94.97 E-value=0.021 Score=51.72 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+.|.++|+.|+||||+++.+.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998754
No 235
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.97 E-value=0.016 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=19.9
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999876
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.91 E-value=0.038 Score=52.05 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc------ccceEeee
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE------FEGNCFLG 242 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 242 (471)
.|..+|..+-..-.++.|+|.+|+|||+||.+++...... -..++|++
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444554444556799999999999999999987553221 24566665
No 237
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.89 E-value=0.045 Score=60.24 Aligned_cols=47 Identities=28% Similarity=0.310 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..++|....++.+.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899999999988777643334457899999999999999999875
No 238
>PRK05439 pantothenate kinase; Provisional
Probab=94.86 E-value=0.036 Score=54.39 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=25.1
Q ss_pred CCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 204 RPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
....-+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999998876543
No 239
>PRK13946 shikimate kinase; Provisional
Probab=94.85 E-value=0.021 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+.|.++|++|+||||+|+.+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 240
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.76 E-value=0.029 Score=48.93 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=26.0
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
++.|+|.+|+||||++..+.......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999887655434445544
No 241
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.75 E-value=1.5 Score=44.71 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=31.6
Q ss_pred cchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHH-HHHHH
Q 041795 189 LNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLA-GAIFN 229 (471)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~ 229 (471)
|.+.+++|..||.... -..|.|.|+-|+||+.|. .++..
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~ 40 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLK 40 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHh
Confidence 5677899999998544 458999999999999999 55544
No 242
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.023 Score=51.83 Aligned_cols=26 Identities=38% Similarity=0.413 Sum_probs=23.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+|+|-||=|+||||||+.+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998866
No 243
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.73 E-value=0.03 Score=53.79 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=33.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR 245 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 245 (471)
-..++|+|..|+|||||++.+++.++.+|+..|++..+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iG 107 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVG 107 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec
Confidence 457899999999999999999999988888888776443
No 244
>PRK14530 adenylate kinase; Provisional
Probab=94.73 E-value=0.023 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|+|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 245
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.67 E-value=0.13 Score=55.99 Aligned_cols=108 Identities=25% Similarity=0.239 Sum_probs=60.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeee----hhhhhhhc--------CcccccCCH---------
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLG----NVREESEK--------GVLDDVNKI--------- 259 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~----~~~~~~~~--------~VLDdv~~~--------- 259 (471)
+-|.|+|.+|+|||++|+.+++.....|-.. .|+. .++..... -++|+++..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~ 265 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 265 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCC
Confidence 4589999999999999999988754433110 0000 00110000 167887532
Q ss_pred -------hhHHHHhcCCCCCC--CCcEEEEEeCChhhhhhh-----CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 260 -------GQLQYLTCGLDRFG--PGSRIIITTRDKWILDKF-----GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 260 -------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+..++..++.+. .+.-+|.||.....+... .. +..+.++..+.++-.+++..+.
T Consensus 266 g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRf--dr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 266 GGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRF--DRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred CCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCccc--ceEEEcCCCCHHHHHHHHHHHh
Confidence 12334443333322 244455577766543321 12 4677888888877777777655
No 246
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.67 E-value=0.049 Score=52.29 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
..-.++.|.|.+|+|||+||.+++......=+.++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44679999999999999999998665433333555655
No 247
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.66 E-value=0.021 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.|+|+|+.|+|||||++.+...+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 3789999999999999999876543
No 248
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.024 Score=54.80 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-|+|.++|++|.|||+|++++++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 5899999999999999999999974
No 249
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.65 E-value=0.072 Score=46.20 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4689999999999999999997754
No 250
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.025 Score=50.23 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.6
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
+-|.++||.|.||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765554
No 251
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.64 E-value=0.028 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...|.|+|+.|.||||||+.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999874
No 252
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.63 E-value=0.03 Score=51.84 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=24.9
Q ss_pred hhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 200 LCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 200 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+..+....+.+.|+|.+|+|||||++.+...
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3344456789999999999999999998653
No 253
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.63 E-value=0.029 Score=51.46 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 254
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.60 E-value=0.053 Score=52.48 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhccccceEe
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF 240 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 240 (471)
.+..++.|.|.+|.|||||...+.+.+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 458899999999999999999999987666544443
No 255
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.026 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|.|.+|.||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999883
No 256
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.56 E-value=0.024 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
++++|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998753
No 257
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.56 E-value=0.04 Score=55.92 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCccccchhHHHHHHhhhc------------CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCI------------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++|.++.++.+.-.+.. +....+-|.++|++|+|||+||+.++..+..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3467777666666443331 1112467899999999999999999987644
No 258
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.55 E-value=0.047 Score=58.33 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+..+-|.+..+.|.++.........+|.|+|++|+||||+|+.++..+..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34566777777777766544455668999999999999999999988654
No 259
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.53 E-value=0.067 Score=50.21 Aligned_cols=48 Identities=23% Similarity=0.182 Sum_probs=33.7
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.|.++|..+-..-..+.|.|.+|+||||||..+.......-+..+|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 444555434345679999999999999999987765433445566765
No 260
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.52 E-value=0.11 Score=50.09 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
-..|.|.|..|.||||++..+.+.+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 358999999999999999988776543
No 261
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.52 E-value=0.04 Score=58.20 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=27.0
Q ss_pred hhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 199 LLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 199 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|....++..+|+|.|.+|.||||||+.+...+
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 444345568899999999999999999998764
No 262
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.51 E-value=0.066 Score=50.64 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=35.0
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
..|.++|..+=+.-.++.|.|.+|+|||+||.++.......=+..+|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3445556544456789999999999999999987665334445566665
No 263
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.51 E-value=0.053 Score=51.24 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.++.+.+.....+..+|||.|.||.|||||...+...+..
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 3444444444446789999999999999999988876543
No 264
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.50 E-value=0.045 Score=55.58 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=36.6
Q ss_pred CCccccchhHHHHHHhhhc---------C---CCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCI---------G---RPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++|.+..++.+...+.. + ......|.++|++|+|||+||+.+...+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4478888888777665532 0 011467899999999999999999887543
No 265
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.50 E-value=0.023 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEeccCcchhhhHHHHHHHhh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~ 231 (471)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 266
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.47 E-value=0.37 Score=47.61 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=75.4
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc--------------------ccceEeee-----------
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--------------------FEGNCFLG----------- 242 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------f~~~~~~~----------- 242 (471)
+.+.+.+..+ .-...+.+.|..|+||+++|..++..+-.. .....++.
T Consensus 13 ~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vd 91 (319)
T PRK06090 13 QNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVE 91 (319)
T ss_pred HHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHH
Confidence 4444444322 225578999999999999999998753211 11222232
Q ss_pred hhhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCceEEeCCCCHH
Q 041795 243 NVREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTNVYEVNGLRYH 307 (471)
Q Consensus 243 ~~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ 307 (471)
.+++.... + |+|+++ +....+.|+..+.....++.+|++|.+. .++..+.. ....+.+++++.+
T Consensus 92 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~~~~~~ 170 (319)
T PRK06090 92 QIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVTPPSTA 170 (319)
T ss_pred HHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCCCCCHH
Confidence 11211110 0 889987 4556777877776666778887777665 34433321 1567999999999
Q ss_pred HHHHHHHhc
Q 041795 308 EALELFCNC 316 (471)
Q Consensus 308 ea~~Lf~~~ 316 (471)
++.+.+...
T Consensus 171 ~~~~~L~~~ 179 (319)
T PRK06090 171 QAMQWLKGQ 179 (319)
T ss_pred HHHHHHHHc
Confidence 999888754
No 267
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.25 Score=49.25 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=75.7
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc---------------------ccceEeee---------
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE---------------------FEGNCFLG--------- 242 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~--------- 242 (471)
-+++.+.+..+ .-...+.+.|..|+||+++|..++..+... .+...++.
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG 89 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC
Confidence 34455555422 225578899999999999999988864321 11122221
Q ss_pred --hhhhhhhc-------C-----cccccC--CHhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCceEEeCCCC
Q 041795 243 --NVREESEK-------G-----VLDDVN--KIGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTNVYEVNGLR 305 (471)
Q Consensus 243 --~~~~~~~~-------~-----VLDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~L~ 305 (471)
.+++.... + |+|+++ +....+.|+..+..-..++.+|++|.+.. ++..+.. ....+.+++++
T Consensus 90 idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS-RCq~~~~~~~~ 168 (334)
T PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS-RCRLHYLAPPP 168 (334)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-ccccccCCCCC
Confidence 11111111 1 889887 44566777777766667888888777643 4433221 14568999999
Q ss_pred HHHHHHHHHhc
Q 041795 306 YHEALELFCNC 316 (471)
Q Consensus 306 ~~ea~~Lf~~~ 316 (471)
.+++.+.+...
T Consensus 169 ~~~~~~~L~~~ 179 (334)
T PRK07993 169 EQYALTWLSRE 179 (334)
T ss_pred HHHHHHHHHHc
Confidence 99998877654
No 268
>PRK13975 thymidylate kinase; Provisional
Probab=94.44 E-value=0.032 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..|.|.|+.|+||||+|+.+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999988754
No 269
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.44 E-value=0.041 Score=50.85 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=39.5
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.-.++||-++.++++.-.-. ..+.+-+.|.||+|+||||-+..+++.+..
T Consensus 25 ~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 34568999998888876554 335778889999999999999988887443
No 270
>PRK04182 cytidylate kinase; Provisional
Probab=94.43 E-value=0.031 Score=50.07 Aligned_cols=24 Identities=38% Similarity=0.449 Sum_probs=21.6
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|.|.|+.|+||||+|+.+++.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988753
No 271
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.1 Score=53.90 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=33.7
Q ss_pred CCccccchhHHHHH---Hhhhc-------CCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 184 DGLVGLNSRIEKIK---SLLCI-------GRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 184 ~~~vGr~~~~~~l~---~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+++-|.|+...+|+ +.|.. ++.=++=|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 45678876655554 45542 2222678899999999999999999764
No 272
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.40 E-value=0.031 Score=49.93 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.7
Q ss_pred EEEeccCcchhhhHHHHHHHhhhc
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
|.|.|.+|+|||||.+.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999988754
No 273
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.38 E-value=0.069 Score=50.66 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=27.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
...+.++|.+|+|||+||.++++.+...-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457899999999999999999998655433444443
No 274
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.36 E-value=0.038 Score=50.02 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=27.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccce
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN 238 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 238 (471)
.+++.|+|+.|+|||||++.+.......|...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~ 33 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRV 33 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccc
Confidence 47899999999999999999999888877533
No 275
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.36 E-value=0.029 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=21.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988754
No 276
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.36 E-value=0.26 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+.++.++|.+|+||||+|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999998887754
No 277
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.35 E-value=0.03 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|+|.+|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998864
No 278
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.35 E-value=0.038 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.|.++|++|+||||+|+.+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999887643
No 279
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.34 E-value=0.073 Score=52.50 Aligned_cols=49 Identities=31% Similarity=0.308 Sum_probs=35.4
Q ss_pred HHHHhhh-cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeeh
Q 041795 195 KIKSLLC-IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGN 243 (471)
Q Consensus 195 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 243 (471)
.|..+|. .+-+.-+++-|+|.+|+||||||.+++......=..++|++.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 4445554 344557899999999999999999987776554445667753
No 280
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.03 Score=49.45 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.5
Q ss_pred EEEEeccCcchhhhHHHHHH
Q 041795 209 IVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~ 228 (471)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 281
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.29 E-value=0.034 Score=49.57 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|.|+|++|+||||+|+.+.+.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998753
No 282
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.28 E-value=0.061 Score=53.59 Aligned_cols=48 Identities=33% Similarity=0.257 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
..++|.++.+..+...+..+ +-+.+.|.+|+|||+||+.++..+...|
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34889888888777666544 3688999999999999999998766444
No 283
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.28 E-value=0.032 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.9
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
+++|+|..|+|||||+..+...+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987654
No 284
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.035 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|.|-|.+|+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998754
No 285
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.25 E-value=0.044 Score=53.31 Aligned_cols=28 Identities=29% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+...+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999988765544
No 286
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.25 E-value=0.051 Score=52.50 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=28.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
++|+|+|.+|+|||||+..+...++... .++-+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999887765 344444
No 287
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.24 E-value=0.03 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=21.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997654
No 288
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.38 Score=50.79 Aligned_cols=133 Identities=26% Similarity=0.243 Sum_probs=76.2
Q ss_pred CCccccchhHHHHHHhhh---c--------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE-------eeehhh
Q 041795 184 DGLVGLNSRIEKIKSLLC---I--------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC-------FLGNVR 245 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~---~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-------~~~~~~ 245 (471)
....|.+...+.+.+... . +-...+.+.++|++|.|||.||+++++.....|-..- |+..+.
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGese 321 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESE 321 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHH
Confidence 345566666665555432 1 1234668999999999999999999996555443222 222111
Q ss_pred hhh----hc--------CcccccCCH-------------hhHHHHhcCCCCCCC--CcEEEEEeCChhhhhhh-----Cc
Q 041795 246 EES----EK--------GVLDDVNKI-------------GQLQYLTCGLDRFGP--GSRIIITTRDKWILDKF-----GV 293 (471)
Q Consensus 246 ~~~----~~--------~VLDdv~~~-------------~~~~~l~~~~~~~~~--gs~IiiTTR~~~v~~~~-----~~ 293 (471)
... .. -.+|+++.. .....++..++.... +..+|-||-........ ..
T Consensus 322 k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRf 401 (494)
T COG0464 322 KNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRF 401 (494)
T ss_pred HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCcc
Confidence 111 00 056776421 233444444432222 33445555544433311 22
Q ss_pred CCCceEEeCCCCHHHHHHHHHhccc
Q 041795 294 HDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
+..+.++.-+.++....|..+.-
T Consensus 402 --d~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 402 --DRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred --ceEeecCCCCHHHHHHHHHHHhc
Confidence 56789999999999999998774
No 289
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.19 E-value=0.075 Score=53.71 Aligned_cols=50 Identities=24% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666544445679999999999999999999887665545566665
No 290
>PRK15453 phosphoribulokinase; Provisional
Probab=94.18 E-value=0.063 Score=51.66 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+|+|.|.+|+||||+|+.+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999987654
No 291
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.18 E-value=0.071 Score=52.72 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=43.3
Q ss_pred CCCccccchhHHHHHHhhhcC----CCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 183 FDGLVGLNSRIEKIKSLLCIG----RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...|+|.++.++++.+.|... +..-+++.+.|+.|.||||||..+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 347999999999999988732 2447899999999999999999988766554
No 292
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.16 E-value=0.081 Score=52.23 Aligned_cols=49 Identities=31% Similarity=0.286 Sum_probs=36.1
Q ss_pred HHHHhhh-cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeeh
Q 041795 195 KIKSLLC-IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGN 243 (471)
Q Consensus 195 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 243 (471)
.|..+|. .+-+.-+++-|+|.+|+||||||.+++......-...+|++.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 4445554 334557799999999999999999988776555556777764
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.14 E-value=0.065 Score=53.15 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=29.0
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++.+.+........+|+|.|.+|+|||||+..+...+..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344444332345789999999999999999998877654
No 294
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.062 Score=56.25 Aligned_cols=52 Identities=31% Similarity=0.366 Sum_probs=41.5
Q ss_pred CCCCccccchhHHHHHHhhhc----------CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...++-|.+..+.+|.+++.. +-...+=|.++|++|+|||.||+++++...-
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 446788999999999988752 1123677899999999999999999987543
No 295
>PRK14527 adenylate kinase; Provisional
Probab=94.12 E-value=0.043 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|.|+|.+|.||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 296
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.043 Score=51.18 Aligned_cols=27 Identities=37% Similarity=0.433 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
-.++||+|.+|+|||||++.+.--.+.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 458999999999999999998754433
No 297
>PLN02200 adenylate kinase family protein
Probab=94.10 E-value=0.046 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|.|+|++|+||||+|+.++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 298
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.08 E-value=0.087 Score=49.67 Aligned_cols=50 Identities=24% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeeh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGN 243 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 243 (471)
..|.++|..+-+.-.++.|.|.+|+|||+||.++......+=..++|+..
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 34455555444567899999999999999999986553333345566653
No 299
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.45 Score=48.35 Aligned_cols=136 Identities=20% Similarity=0.125 Sum_probs=74.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc-ccceEe-eeh---hhhhhhc------CcccccCCH----------------
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNCF-LGN---VREESEK------GVLDDVNKI---------------- 259 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~-~~~---~~~~~~~------~VLDdv~~~---------------- 259 (471)
-|=-.++|++|.|||++..++++.+.-. |+...= +.. .+..... -|+.|++-.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~ 314 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEG 314 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccC
Confidence 3556799999999999999999865432 221110 110 1111111 167777521
Q ss_pred ----hhHHHHhcCCCCCCC---CcEEEE-EeCChhh-----hhhhCcCCCceEEeCCCCHHHHHHHHHhccccCCCCCch
Q 041795 260 ----GQLQYLTCGLDRFGP---GSRIII-TTRDKWI-----LDKFGVHDTNVYEVNGLRYHEALELFCNCAFKENHCPSG 326 (471)
Q Consensus 260 ----~~~~~l~~~~~~~~~---gs~Iii-TTR~~~v-----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 326 (471)
-.+.-|+..++.... +=|||| ||-..+- +..-.+ +..+.++-=+.+.-..|+.+..... .+..-
T Consensus 315 ~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRm--DmhI~mgyCtf~~fK~La~nYL~~~-~~h~L 391 (457)
T KOG0743|consen 315 DLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM--DMHIYMGYCTFEAFKTLASNYLGIE-EDHRL 391 (457)
T ss_pred CcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcc--eeEEEcCCCCHHHHHHHHHHhcCCC-CCcch
Confidence 012234444432211 235555 6654432 222223 4567788888888888888766332 23444
Q ss_pred HHHHHHHH-------HHHHhhhhcCC
Q 041795 327 FLASSKRV-------LKVLGSFFHRK 345 (471)
Q Consensus 327 ~~~l~~~i-------l~~lg~~L~~~ 345 (471)
+.++.+.+ +.+.+.++..+
T Consensus 392 ~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 392 FDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred hHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 55555544 77777888776
No 300
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.01 E-value=0.067 Score=51.42 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=29.9
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|...+.....+..+|||.|.||+|||||...+-..+.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~ 76 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR 76 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH
Confidence 345555555556678999999999999999988877653
No 301
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.00 E-value=0.041 Score=48.66 Aligned_cols=21 Identities=43% Similarity=0.355 Sum_probs=17.7
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 302
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.041 Score=47.29 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+-|.|.|-+|+||||||..++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 45889999999999999999864
No 303
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.98 E-value=0.091 Score=44.16 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=29.3
Q ss_pred hHHHHHHhhhc-CCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 192 RIEKIKSLLCI-GRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 192 ~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.++.|...+.. .++.+-|++..|.+|+|||.+++.+++.+
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 33444444443 34457899999999999999999998873
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.98 E-value=0.061 Score=49.74 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=25.3
Q ss_pred CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 204 RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++++|+++|..|+|||||..++.+...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999999887654
No 305
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.97 E-value=0.052 Score=58.44 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=40.7
Q ss_pred CCCCccccchhHHHHHHhhhcCC---CCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGR---PDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+++|-+..++++..+|.... ...+++.|+|.+|+||||+++.++..+
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44678999999999999887432 234679999999999999999998764
No 306
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.95 E-value=0.49 Score=40.66 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=29.3
Q ss_pred HHHHHHhhhcceEEEEEccCcccchhhHHHHHHHHHhhhcCCCeEEeEE
Q 041795 57 PALFTAIQGSKISVIVLSKHYASSKWCLHELVKILECKSTNGQIVVPVF 105 (471)
Q Consensus 57 ~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~viPif 105 (471)
.++.++|++++.+|+|++.....+.+. .++...+.... .+..++.|+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivl 49 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLL 49 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEE
Confidence 467889999999999999765544442 24555544321 234455554
No 307
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.95 E-value=0.045 Score=48.59 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|+|.|..|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998764
No 308
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.94 E-value=0.044 Score=45.34 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.3
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999998875
No 309
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.92 E-value=0.042 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEeccCcchhhhHHHHHHHhh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~ 231 (471)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998763
No 310
>PLN02348 phosphoribulokinase
Probab=93.91 E-value=0.075 Score=53.54 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 204 RPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.+...+|+|.|.+|+||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999988754
No 311
>PRK14532 adenylate kinase; Provisional
Probab=93.89 E-value=0.042 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.8
Q ss_pred EEEeccCcchhhhHHHHHHHhh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~ 231 (471)
|.+.|++|+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998754
No 312
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.83 E-value=0.14 Score=49.99 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHhhhcC--CCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 184 DGLVGLNSRIEKIKSLLCIG--RPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..++|-.++-..+.+++... .++...+.|+|+.|.|||+|......+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh
Confidence 45899999999999888631 134567889999999999998777665
No 313
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.82 E-value=0.061 Score=48.50 Aligned_cols=34 Identities=26% Similarity=0.158 Sum_probs=25.2
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
++.|.|.+|+|||+||.++.......=..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3679999999999999998776443334455654
No 314
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.81 E-value=0.047 Score=42.95 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=21.9
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++.+.|.+|+||||++..+...++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999988765
No 315
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.80 E-value=0.07 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+....|+++|+.|+||||+++.++..+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998765
No 316
>PLN02796 D-glycerate 3-kinase
Probab=93.79 E-value=0.22 Score=49.40 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..-+|+|.|..|+|||||++.+...+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4678999999999999999999887654
No 317
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.072 Score=49.81 Aligned_cols=51 Identities=35% Similarity=0.427 Sum_probs=38.8
Q ss_pred CccccchhHHHHHHhhh-----------cCCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 185 GLVGLNSRIEKIKSLLC-----------IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
++-|.+-...++.+... -+-+..+-|.++|++|.|||.||+++++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 45677777777776543 1235578899999999999999999999765554
No 318
>PRK09354 recA recombinase A; Provisional
Probab=93.79 E-value=0.11 Score=51.79 Aligned_cols=50 Identities=32% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHhhh-cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehh
Q 041795 195 KIKSLLC-IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNV 244 (471)
Q Consensus 195 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 244 (471)
.|..+|. .+-+.-+++-|+|.+|+||||||.+++......=...+|++.-
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 4455565 3445578999999999999999999887765555566777643
No 319
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.057 Score=47.36 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999988876655
No 320
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.77 E-value=0.05 Score=47.96 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.++++|+|..|+|||||...+...++.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 3689999999999999999998886654
No 321
>PHA02244 ATPase-like protein
Probab=93.76 E-value=0.058 Score=53.89 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=30.3
Q ss_pred CCccccchhHHH----HHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEK----IKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~----l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|....... +..++.. ...|.|+|.+|+|||+||++++....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 346665555543 3333332 23577899999999999999998754
No 322
>PRK14531 adenylate kinase; Provisional
Probab=93.75 E-value=0.053 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.8
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|+|++|+||||+|+.+...+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 323
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.68 E-value=0.052 Score=54.06 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=25.8
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..++.++|+|++|+|||.+|+++++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 457899999999999999999999975443
No 324
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.67 E-value=0.092 Score=51.60 Aligned_cols=31 Identities=32% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 203 GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 203 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
......+|+|.|.+|+|||||+..+......
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3345789999999999999999998876443
No 325
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.65 E-value=0.1 Score=55.56 Aligned_cols=45 Identities=33% Similarity=0.543 Sum_probs=36.7
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
++++|.+..++.+...+.. ....-+.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999887653 23456789999999999999999764
No 326
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.63 E-value=0.072 Score=50.17 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=26.2
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhh-hccccceEeee
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLI-YKEFEGNCFLG 242 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~ 242 (471)
+.-.++.|.|.+|+||||||.+++... ... ...+++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 445699999999999999987766554 333 3345544
No 327
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.61 E-value=0.054 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+++|+|..|.|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998654
No 328
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.60 E-value=0.052 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998764
No 329
>PRK06761 hypothetical protein; Provisional
Probab=93.60 E-value=0.056 Score=52.29 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=26.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc-cccceEee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK-EFEGNCFL 241 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~ 241 (471)
++|.|.|++|+||||+++.+++.+.. .++..++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~ 38 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYL 38 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEe
Confidence 57999999999999999999998654 34444443
No 330
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.58 E-value=0.056 Score=49.65 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.+|||+|+.|+||||.|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999998765
No 331
>PRK04328 hypothetical protein; Provisional
Probab=93.56 E-value=0.12 Score=49.29 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.|.++|..+-+.-.++.|.|.+|.|||+||.++...-...=+...|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 444555444445679999999999999999987665333345566665
No 332
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.56 E-value=0.06 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.++|.|+|++|+|||||++.+....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999998753
No 333
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.55 E-value=0.065 Score=53.31 Aligned_cols=47 Identities=28% Similarity=0.288 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..++|....++++.+.+..-......|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999998887644444457889999999999999999764
No 334
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.54 E-value=0.058 Score=44.12 Aligned_cols=22 Identities=41% Similarity=0.270 Sum_probs=19.9
Q ss_pred ceEEEEeccCcchhhhHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~ 228 (471)
-..++|.|..|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 335
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.53 E-value=0.056 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+|.++|.+|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999988765
No 336
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.53 E-value=0.059 Score=50.46 Aligned_cols=48 Identities=33% Similarity=0.279 Sum_probs=32.0
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-ccceEeee
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNCFLG 242 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 242 (471)
.|.++|..+-+.-.++.|.|.+|+|||+||.++...-... =+.++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3445554343456799999999999999999877654333 34455555
No 337
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.51 E-value=0.11 Score=54.84 Aligned_cols=46 Identities=28% Similarity=0.355 Sum_probs=35.5
Q ss_pred ccccchhHHHHHHhhhc---CCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 186 LVGLNSRIEKIKSLLCI---GRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 186 ~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
++--..-++++..||.. +....+++.+.|++|+||||.++.+++.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 44445667888888863 23346799999999999999999998864
No 338
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.50 E-value=0.13 Score=53.60 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=35.6
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
+.+|.++|..+-..-.++.|.|.+|+|||||+.+++......=..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666666544455679999999999999999998776544323345554
No 339
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.49 E-value=0.07 Score=47.15 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.7
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999876543
No 340
>PRK13695 putative NTPase; Provisional
Probab=93.49 E-value=0.078 Score=47.49 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=24.7
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc-cccceEee
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK-EFEGNCFL 241 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~ 241 (471)
.++|+|.+|+|||||++.+++.+.. .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3789999999999999999887653 34433343
No 341
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.48 E-value=0.068 Score=52.01 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++++|+|.+|+||||++..++.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999998877543
No 342
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.48 E-value=0.094 Score=46.84 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.6
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
++.++|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999998876544
No 343
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.47 E-value=0.083 Score=54.15 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+.++|.+|+|||+||+.++....
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999987653
No 344
>PRK08356 hypothetical protein; Provisional
Probab=93.45 E-value=0.065 Score=49.04 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=19.3
Q ss_pred eEEEEeccCcchhhhHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~ 228 (471)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999993
No 345
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.085 Score=50.41 Aligned_cols=52 Identities=37% Similarity=0.445 Sum_probs=40.0
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
.++-|.+..+++|.+.... +-..++=|.++|.+|.|||-||++|+|+-+.-|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3567888899988876531 224467788999999999999999999765544
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.42 E-value=0.1 Score=46.08 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=28.5
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 191 SRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+.+++|.+.|. + +++.++|..|+|||||...+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45677777775 2 79999999999999999988653
No 347
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.41 E-value=0.064 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 348
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.38 E-value=0.06 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=20.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+.|.|+|.+|+||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999887554
No 349
>PRK01184 hypothetical protein; Provisional
Probab=93.37 E-value=0.061 Score=48.59 Aligned_cols=18 Identities=39% Similarity=0.831 Sum_probs=16.6
Q ss_pred eEEEEeccCcchhhhHHH
Q 041795 208 RIVGIWGMGGTGKTTLAG 225 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~ 225 (471)
.+|+|+|++|+||||+|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 479999999999999987
No 350
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.31 E-value=0.087 Score=49.66 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=29.6
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
-.++|+|..|+|||||...+.......|.....+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 46789999999999999999998888886665554
No 351
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.29 E-value=0.066 Score=48.67 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.7
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
+.|.+.|.+|+||||+|++++..+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4678999999999999999998766553
No 352
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.28 E-value=0.055 Score=48.80 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEeccCcchhhhHHHHHHH
Q 041795 209 IVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~ 229 (471)
+|+|+|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 353
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.071 Score=56.76 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=24.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..-|.|.|..|+|||+||+++++.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k 457 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSK 457 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcc
Confidence 567899999999999999999998763
No 354
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.25 E-value=0.12 Score=49.81 Aligned_cols=50 Identities=32% Similarity=0.232 Sum_probs=35.0
Q ss_pred CccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 185 GLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.+.-.....+.+.++|...-.....|.|.|..|.||||++..+...+...
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 33333344456666665332345799999999999999999998876655
No 355
>PRK13768 GTPase; Provisional
Probab=93.20 E-value=0.11 Score=49.69 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=22.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.++.|.|.||+||||++..+......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 57899999999999999988876544
No 356
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.20 E-value=0.07 Score=56.96 Aligned_cols=26 Identities=42% Similarity=0.490 Sum_probs=23.2
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+.-++..++|++|+||||||.-++++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 45789999999999999999999875
No 357
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.15 E-value=0.067 Score=54.65 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-++.|+|+|..|.|||||++.+++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988753
No 358
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.15 E-value=0.22 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..++.++|.+|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 359
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.13 E-value=0.13 Score=50.67 Aligned_cols=24 Identities=46% Similarity=0.545 Sum_probs=20.7
Q ss_pred CCCceEEEEeccCcchhhhHHHHH
Q 041795 204 RPDFRIVGIWGMGGTGKTTLAGAI 227 (471)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLA~~v 227 (471)
.+++..|.+.|.+|.|||-||-+.
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHH
Confidence 456899999999999999998653
No 360
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.11 E-value=0.14 Score=45.46 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=28.0
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhccccceE
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC 239 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 239 (471)
+...+|=+.|++|.||||||.+++..+...--...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34678999999999999999999998766543333
No 361
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.10 E-value=0.08 Score=48.07 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
-..++|+|..|.|||||++.+...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999887654
No 362
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.09 E-value=0.068 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEeccCcchhhhHHHHHHHhh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~ 231 (471)
|.|+|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998753
No 363
>PRK12338 hypothetical protein; Provisional
Probab=93.05 E-value=0.079 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|.|.|.+|+||||+|+.++.++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4789999999999999999998864
No 364
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.03 E-value=0.16 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+++.++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998877654
No 365
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.02 E-value=0.29 Score=47.21 Aligned_cols=28 Identities=21% Similarity=0.102 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+..-++|+|..|.|||||.+.+...+..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 3578999999999999999999877654
No 366
>PLN02165 adenylate isopentenyltransferase
Probab=93.01 E-value=0.084 Score=52.12 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+++|+|+.|+|||+||..++..+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 355899999999999999999988754
No 367
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.01 E-value=0.21 Score=50.07 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=26.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEe
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF 240 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 240 (471)
-..+.|.|..|.||||+.+.+...+.......++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ 155 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHII 155 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEE
Confidence 3689999999999999999988876544444333
No 368
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.98 E-value=0.17 Score=52.62 Aligned_cols=50 Identities=22% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666544445679999999999999999999887653323345544
No 369
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.97 E-value=0.074 Score=49.46 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=20.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|+|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 370
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.97 E-value=0.082 Score=50.23 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.-.+++|+|.+|+|||||++.+..-....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt 66 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT 66 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC
Confidence 35689999999999999999998765443
No 371
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.96 E-value=0.087 Score=47.98 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..|+|.|..|+||||+|+.+.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999987654
No 372
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=92.96 E-value=0.29 Score=44.09 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-..+-++|.+|.|||||.+.+|...
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhh
Confidence 4588999999999999999999753
No 373
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.94 E-value=0.16 Score=53.42 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=38.3
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 192 RIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 192 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
-+.+|.++|..+-..-.++.|.|.+|+|||||+.+++.....+=+.++++.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345677777655566789999999999999999999887655444455554
No 374
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.93 E-value=0.084 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.1
Q ss_pred EeccCcchhhhHHHHHHHhhhcc
Q 041795 212 IWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 212 I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
|+|++|+||||+++.+.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999998876544
No 375
>PRK02496 adk adenylate kinase; Provisional
Probab=92.91 E-value=0.078 Score=47.90 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.4
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+.|.|++|+||||+|+.+...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 376
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.90 E-value=0.089 Score=48.83 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.|+|+|=||+||||+|..++.++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~ 26 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS 26 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh
Confidence 5899999999999999997766443
No 377
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.89 E-value=0.097 Score=52.10 Aligned_cols=45 Identities=29% Similarity=0.294 Sum_probs=35.5
Q ss_pred ccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 186 LVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
++|....++++.+.+..-......|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467888888888777643444557899999999999999999765
No 378
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.17 Score=46.93 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=20.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHH
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.-.+-+|.|+.|.||||||..+.-
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 446889999999999999998864
No 379
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.88 E-value=0.15 Score=46.16 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...++.|.|.+|.||||+|+.+...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988754
No 380
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.87 E-value=0.37 Score=48.69 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=43.0
Q ss_pred cccccC---CHhhHHHHhcCCCCCCCCcEEEEEeCChhhhhhhCcCCCceEEeCCCCHHHHHHHHHhccccCCCCCchHH
Q 041795 252 VLDDVN---KIGQLQYLTCGLDRFGPGSRIIITTRDKWILDKFGVHDTNVYEVNGLRYHEALELFCNCAFKENHCPSGFL 328 (471)
Q Consensus 252 VLDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 328 (471)
|||.-- +.+..+.|...++.+. |. ||+.|.+..+...-+ ...+-+..-+.+ ....+|.
T Consensus 727 ILDEPTNNLDIESIDALaEAIney~-Gg-Vi~VsHDeRLi~eT~---C~LwVvE~Q~i~--------------eIdGdFe 787 (807)
T KOG0066|consen 727 ILDEPTNNLDIESIDALAEAINEYN-GG-VIMVSHDERLIVETD---CNLWVVENQGID--------------EIDGDFE 787 (807)
T ss_pred EecCCCCCcchhhHHHHHHHHHhcc-Cc-EEEEecccceeeecC---ceEEEEccCChh--------------hccccHH
Confidence 677653 4566677766665443 44 566666665443322 233444433222 3345677
Q ss_pred HHHHHHHHHHhhhhcCC
Q 041795 329 ASSKRVLKVLGSFFHRK 345 (471)
Q Consensus 329 ~l~~~il~~lg~~L~~~ 345 (471)
+.-++++..+|..+-++
T Consensus 788 DYkkEVLdaLGEv~vs~ 804 (807)
T KOG0066|consen 788 DYKKEVLDALGEVLVSK 804 (807)
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 77888888888877554
No 381
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.87 E-value=0.065 Score=45.68 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=25.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|+|||||.+.++..... ..+.+++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~-~~G~i~~ 44 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPP-DSGSILI 44 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHE-SEEEEEE
T ss_pred CCEEEEEccCCCccccceeeecccccc-ccccccc
Confidence 358999999999999999998776544 3344443
No 382
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.85 E-value=0.098 Score=53.01 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=26.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcccc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFE 236 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 236 (471)
.-+|+|+|..|+|||||+..+...+...+.
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~ 34 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSERFS 34 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhCce
Confidence 468999999999999999999998776543
No 383
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.83 E-value=0.08 Score=46.18 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=21.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++++.|.+|+||||++..+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4789999999999999999877543
No 384
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.83 E-value=0.14 Score=47.00 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=30.0
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHH
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..++|-+..+..|+-.... ..-+.++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 4578877777766654442 24788999999999999999876
No 385
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.82 E-value=0.16 Score=50.47 Aligned_cols=57 Identities=35% Similarity=0.302 Sum_probs=38.8
Q ss_pred CCCCccccchhHHH---HHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccce
Q 041795 182 NFDGLVGLNSRIEK---IKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN 238 (471)
Q Consensus 182 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 238 (471)
....+||.....+. +.+++..+.-.-+.|.|.|++|.|||+||..+++.+....+.+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 34679998776654 3445554444568999999999999999999999988665533
No 386
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.81 E-value=0.085 Score=47.78 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+.|.|+|++|+||+||+..+.....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 36899999999999999999987653
No 387
>PRK05973 replicative DNA helicase; Provisional
Probab=92.78 E-value=0.17 Score=47.72 Aligned_cols=37 Identities=22% Similarity=0.086 Sum_probs=27.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.-.++.|.|.+|+|||++|.++......+=..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4568999999999999999998776443333344543
No 388
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.76 E-value=0.19 Score=46.91 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=32.1
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.|.++|..+-..-.++.|.|.+|+|||++|.+++.....+=..++|++
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555434345679999999999999999988766433323444554
No 389
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.75 E-value=0.18 Score=49.92 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=33.9
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc------cceEeeeh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF------EGNCFLGN 243 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~ 243 (471)
..+..+|..+-..-.++-|+|.+|+|||+||.+++....... ...+|++.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 344455544445577999999999999999999876532211 25667763
No 390
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.75 E-value=0.081 Score=48.56 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.6
Q ss_pred ceEEEEeccCcchhhhHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~ 228 (471)
-.+++|+|++|+|||||.+.+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999998874
No 391
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.74 E-value=0.079 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|+++|.+|+|||||+..+.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988753
No 392
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.74 E-value=0.072 Score=46.47 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=18.3
Q ss_pred EeccCcchhhhHHHHHHHhh
Q 041795 212 IWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 212 I~G~gGiGKTtLA~~v~~~~ 231 (471)
|+|.+|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999864
No 393
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.74 E-value=0.2 Score=44.13 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..|-|++..|.||||+|...+-+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r 25 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR 25 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36778888899999999877655
No 394
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.71 Score=49.13 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=37.7
Q ss_pred CCCCccccchhHHHHHHhhh--cCC--------CCceEEEEeccCcchhhhHHHHHHHh
Q 041795 182 NFDGLVGLNSRIEKIKSLLC--IGR--------PDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~--~~~--------~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...+..|.++.++++.+.+. .++ .=++=|.++|++|.|||.||++++..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 44668899988888777654 111 22677899999999999999999875
No 395
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.73 E-value=0.11 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=21.9
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+|+|.|.+|+||||+|+.+.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999998877653
No 396
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.70 E-value=0.15 Score=42.47 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=21.8
Q ss_pred EEEeccCcchhhhHHHHHHHhhhcc
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
|.+.|.||+||||++..++..+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999998876543
No 397
>PF13245 AAA_19: Part of AAA domain
Probab=92.68 E-value=0.11 Score=39.62 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=16.8
Q ss_pred ceEEEEeccCcchhhhHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~ 228 (471)
.+++.|.|.+|.|||+++....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4578889999999996655443
No 398
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.67 E-value=0.17 Score=49.86 Aligned_cols=43 Identities=23% Similarity=0.135 Sum_probs=30.7
Q ss_pred ccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 186 LVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
++=..+....+...|.. .+.|.|.|.+|+||||+|+.++..+.
T Consensus 47 y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred ccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 33334445556666643 24699999999999999999988643
No 399
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.66 E-value=0.07 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.-|+++|++|+|||||...+.+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56899999999999999998876
No 400
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.65 E-value=0.13 Score=55.63 Aligned_cols=55 Identities=31% Similarity=0.344 Sum_probs=41.2
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-ccceEeee
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNCFLG 242 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 242 (471)
+.++|.++.++.+...+... +-+.++|++|+||||+|+.+.+.+... |...+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 56889998888888777633 255699999999999999999887654 34344443
No 401
>PRK10867 signal recognition particle protein; Provisional
Probab=92.63 E-value=0.21 Score=51.39 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=24.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+|.++|.+|+||||+|..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999998888776544
No 402
>PRK14528 adenylate kinase; Provisional
Probab=92.61 E-value=0.099 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+.|.|.|.+|+||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999987664
No 403
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.56 E-value=0.11 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=22.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..|+|.|+.|+||||+++.+.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 404
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.56 E-value=0.11 Score=46.67 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688999999999999999999876
No 405
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.55 E-value=0.14 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+.++|++|+|||+||+.++..+.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC
Confidence 5799999999999999999987653
No 406
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.52 E-value=0.14 Score=46.32 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=30.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEe
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF 240 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 240 (471)
...|++-|.+|+|||+|..+.+..++++|...+-
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI 46 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVI 46 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEE
Confidence 5799999999999999999999999888876554
No 407
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.52 E-value=0.15 Score=56.30 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhhcC-------CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIG-------RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|-+..++.|.+.+... ......+.++|++|+|||+||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999888877521 12245789999999999999999988763
No 408
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.52 E-value=0.12 Score=55.14 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=40.3
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4467999999999999887643334456789999999999999999875
No 409
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.50 E-value=0.094 Score=50.73 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=22.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+.|+|+|=||+||||+|..++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 46899999999999999998887654
No 410
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.49 E-value=0.14 Score=51.60 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..+++++|+.|+||||++..+.......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5699999999999999999998875433
No 411
>PRK07429 phosphoribulokinase; Provisional
Probab=92.48 E-value=0.16 Score=50.49 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
....+|+|.|..|+||||+|+.+...+...
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 456799999999999999999998776543
No 412
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.48 E-value=0.092 Score=46.02 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988753
No 413
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.45 E-value=0.19 Score=52.89 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.|.++|..+-..-+++.|.|.+|+||||||.++...
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~ 44 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 44 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455544456789999999999999999998554
No 414
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.45 E-value=0.16 Score=49.31 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=35.6
Q ss_pred CCccccc---hhHHHHHHhhhc-CCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 184 DGLVGLN---SRIEKIKSLLCI-GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 184 ~~~vGr~---~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
+..+|-. ..++.|.++|.. .....+.+.|+|.+|+|||++++.+....-..+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~ 89 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS 89 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCC
Confidence 3345543 344566666653 234467899999999999999999988754444
No 415
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.44 E-value=0.15 Score=50.32 Aligned_cols=34 Identities=35% Similarity=0.310 Sum_probs=26.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEe
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF 240 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 240 (471)
.+++.+.|-||+||||+|.+.+-........+.-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLl 35 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLL 35 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEE
Confidence 4789999999999999999977765555443333
No 416
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.082 Score=55.36 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=65.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccc-------eEeeehh----hhhhhc--------CcccccCC--------
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEG-------NCFLGNV----REESEK--------GVLDDVNK-------- 258 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-------~~~~~~~----~~~~~~--------~VLDdv~~-------- 258 (471)
...=|.+||++|+|||-||++|+|.-.-+|-. ..||..+ +....+ ..+|.++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~ 623 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE 623 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC
Confidence 35678899999999999999999986666532 2233221 111111 05676641
Q ss_pred -----HhhHHHHhcCCCCCC--CCcEEEEEeCChhhhh-----hhCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 259 -----IGQLQYLTCGLDRFG--PGSRIIITTRDKWILD-----KFGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 259 -----~~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
....++|+..++... .|.-||-.|-.+++.. --.. +..+-|+.-+.+|=..+++...
T Consensus 624 ~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRl--Dk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 624 GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRL--DKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred CchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCcc--CceeeecCCCHHHHHHHHHHHh
Confidence 122455655554332 3555666665554432 2222 5677788888888888887665
No 417
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=92.42 E-value=0.088 Score=46.09 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.0
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
No 418
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.41 E-value=0.086 Score=43.55 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=18.9
Q ss_pred EEEeccCcchhhhHHHHHHH
Q 041795 210 VGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~ 229 (471)
|+|+|++|+|||||...+.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 419
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.40 E-value=0.093 Score=48.78 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++...
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999987654
No 420
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.40 E-value=0.16 Score=54.86 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 421
>PHA02774 E1; Provisional
Probab=92.39 E-value=0.22 Score=52.55 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=29.9
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 192 RIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 192 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
-+..|+.+|. +.+.-..+.|+|++|.|||.+|..+.+-+.
T Consensus 420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455555653 334456899999999999999999988753
No 422
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=92.38 E-value=0.11 Score=48.47 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 423
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.38 E-value=0.25 Score=48.62 Aligned_cols=53 Identities=36% Similarity=0.320 Sum_probs=40.9
Q ss_pred CCCCccccchhHH---HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 182 NFDGLVGLNSRIE---KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 182 ~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..+.+||-.+..+ -+.++...+.-.-+.|.|+|++|.|||.||-.+.+.+...
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4567898776554 3456666555567899999999999999999999987654
No 424
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=92.34 E-value=2.8 Score=43.44 Aligned_cols=49 Identities=31% Similarity=0.325 Sum_probs=40.5
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....++|+...++++.+.+..-.+.-..|.|.|..|+||-.+|+.+.+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~ 187 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQA 187 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhh
Confidence 4567999999999999988744444456889999999999999999764
No 425
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.32 E-value=0.13 Score=55.52 Aligned_cols=56 Identities=34% Similarity=0.391 Sum_probs=44.1
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc-cccceEeeeh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK-EFEGNCFLGN 243 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~ 243 (471)
+.++|.+..++.|...+... +.+.++|.+|+||||+|+.+.+.+.. +++...|+.+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 56889988888888766533 36899999999999999999987543 3577777664
No 426
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.32 E-value=0.17 Score=50.49 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+||-+..+..|.-.+. ++...-+.|.|..|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~--~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVI--DPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhc--CCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 457898888777654443 2234567899999999999999997643
No 427
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.28 E-value=0.11 Score=48.11 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++|+|.|=||+||||++..++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999988877654
No 428
>PLN02674 adenylate kinase
Probab=92.25 E-value=0.19 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...|.|.|++|+||||+|+.++..+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999988754
No 429
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.23 E-value=0.09 Score=50.87 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.8
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+|+|.|..|+|||||++.+...+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5899999999999999999876543
No 430
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.22 E-value=0.1 Score=48.23 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++...
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987643
No 431
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.20 E-value=0.12 Score=48.83 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.7
Q ss_pred eEEEEecc-CcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWGM-GGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G~-gGiGKTtLA~~v~~~~~~~ 234 (471)
++|+|+|. ||+|||||+..++..+...
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~ 29 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARL 29 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHC
Confidence 57999996 9999999999988765543
No 432
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.19 E-value=0.27 Score=45.04 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
-+++.|.|.+|.||||+...+...+...
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 4688899999999999999988765543
No 433
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.18 E-value=0.17 Score=46.45 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=23.7
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
..|+|.|..|.|||||.+.+.+.+....
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~ 29 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKY 29 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3689999999999999999998766543
No 434
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.16 E-value=0.11 Score=44.92 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+.|.++|..|.|||||++.+-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999998764
No 435
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.16 E-value=0.12 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+-+|.|.|.+|+||||+|..+++.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 436
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=92.16 E-value=0.096 Score=46.21 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988764
No 437
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.11 E-value=0.11 Score=45.18 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|.++|.+|+|||||...+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999888754
No 438
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.09 E-value=0.14 Score=47.47 Aligned_cols=36 Identities=39% Similarity=0.398 Sum_probs=22.9
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 192 RIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 192 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+.+...|... .+..|.|++|.||||++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 344455555321 278999999999998877766654
No 439
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.08 E-value=0.22 Score=44.53 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++.+.|+.|+|||.||+.++..+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 440
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.07 E-value=0.11 Score=47.20 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.+....
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987643
No 441
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=92.07 E-value=0.12 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..|+|+|+.|+||||+|+.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999998764
No 442
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.04 E-value=0.2 Score=50.87 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999887654
No 443
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.03 E-value=0.11 Score=48.27 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=25.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||.+.++..... ..+.+++
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~ 62 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEKP-TRGKIRF 62 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEE
Confidence 468999999999999999998865432 2344444
No 444
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.03 E-value=0.14 Score=44.45 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=24.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
.++.|.|.+|.||||+++++.+.+.-.|
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F 40 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKF 40 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcc
Confidence 4899999999999999999999877554
No 445
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.02 E-value=0.2 Score=50.44 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++++++|+.|+||||++..++.....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~ 232 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK 232 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999998876533
No 446
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.00 E-value=0.27 Score=47.47 Aligned_cols=50 Identities=30% Similarity=0.309 Sum_probs=37.9
Q ss_pred HHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh
Q 041795 196 IKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR 245 (471)
Q Consensus 196 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 245 (471)
|.++|..+-+.-+++=|+|+.|.||||||.+++-.....-...+|++.-.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 33445434456789999999999999999998877666666788887444
No 447
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.98 E-value=0.12 Score=46.52 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=25.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||++.++.... ...+.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~ 59 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILI 59 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 45899999999999999999976432 23444443
No 448
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.94 E-value=0.13 Score=47.81 Aligned_cols=26 Identities=38% Similarity=0.673 Sum_probs=22.7
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.. .+++|+|..|.|||||++.+...+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 799999999999999999987654
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.93 E-value=0.12 Score=48.54 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
-..|+|+|.+|+|||||-+.++-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998875
No 450
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.89 E-value=0.13 Score=49.84 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++|+|+|=||+||||+|..++..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~ 27 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE 27 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57889999999999999998877554
No 451
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=91.89 E-value=0.15 Score=47.73 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=24.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
++++|+|..|+|||||+..+...+..+
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~ 28 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKER 28 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhC
Confidence 589999999999999999999887654
No 452
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.88 E-value=0.13 Score=46.32 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.+....
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4589999999999999999988654
No 453
>PRK06851 hypothetical protein; Provisional
Probab=91.86 E-value=0.17 Score=50.88 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=32.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh-ccccceEeeehhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY-KEFEGNCFLGNVRE 246 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~ 246 (471)
.-+++.|.|.+|+|||||.+.+.+.+. ..|+...+.+....
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 357899999999999999999999875 45777777664443
No 454
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=91.85 E-value=0.13 Score=44.58 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..+|+++|..|+|||||...+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999865
No 455
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=91.83 E-value=0.12 Score=45.18 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.7
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|.|+|.+|+|||||...+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998753
No 456
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.83 E-value=0.23 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.-..++|+|..|.|||||++.+..-+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 457
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.82 E-value=0.12 Score=47.13 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999997654
No 458
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.80 E-value=0.36 Score=44.83 Aligned_cols=27 Identities=33% Similarity=0.215 Sum_probs=22.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.-..|.|.+|+|||||.+.++..++..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 347899999999999999998876554
No 459
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.79 E-value=0.12 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|+++|.+|+|||||...+...
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999888654
No 460
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.79 E-value=0.35 Score=50.74 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..+++|+|.+|+||||++..++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999998876543
No 461
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.78 E-value=0.12 Score=47.66 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=25.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||++.+...... ..+.+++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~ 59 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIILP-DSGEVLF 59 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEE
Confidence 468999999999999999999865432 3444444
No 462
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.78 E-value=0.12 Score=47.81 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||++.+..... ...+.+++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~ 61 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRI 61 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEE
Confidence 45899999999999999999876432 23444444
No 463
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=91.78 E-value=2.2 Score=41.26 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=19.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
...++++|++|+|||||...+..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999988864
No 464
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.77 E-value=0.11 Score=46.06 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+|+|.+|+|||||...+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999998764
No 465
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.76 E-value=0.12 Score=48.65 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999997644
No 466
>PRK06851 hypothetical protein; Provisional
Probab=91.75 E-value=0.31 Score=48.99 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=31.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh-hccccceEeeehh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI-YKEFEGNCFLGNV 244 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~ 244 (471)
-+++.|.|.+|+|||||++.++... ...++..++-+.+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5789999999999999999999985 5567777776643
No 467
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=0.24 Score=49.26 Aligned_cols=69 Identities=33% Similarity=0.483 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhhhcccccccccCCCCccccchhHHHHHHhhhc---------C-CCCceEEEEeccCcchhhhHHHHHHH
Q 041795 160 AELVDVIVKDILKKLENITVSTNFDGLVGLNSRIEKIKSLLCI---------G-RPDFRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 160 ~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..+++.+-.++.+.-+. +.=+++.|.++.++-|++.... + ...=+-|..+|++|.|||-||++|+.
T Consensus 192 ~~Lve~lerdIl~~np~----ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 192 ADLVEALERDILQRNPN----IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred HHHHHHHHHHHhccCCC----cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 34444444444433222 2335688998888888775431 1 12246789999999999999999998
Q ss_pred hhh
Q 041795 230 LIY 232 (471)
Q Consensus 230 ~~~ 232 (471)
.-.
T Consensus 268 Ec~ 270 (491)
T KOG0738|consen 268 ECG 270 (491)
T ss_pred hhc
Confidence 643
No 468
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=91.74 E-value=0.11 Score=45.33 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|+++|.+|+|||||...+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998754
No 469
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=91.73 E-value=0.1 Score=48.62 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.4
Q ss_pred ceEEEEeccCcchhhhHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~ 228 (471)
...+.|+|.+|+||||+|+.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999874
No 470
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.70 E-value=0.13 Score=47.69 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987643
No 471
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=91.68 E-value=0.12 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+|+|.|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 472
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.67 E-value=0.13 Score=48.68 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999998643
No 473
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.66 E-value=0.19 Score=50.17 Aligned_cols=48 Identities=29% Similarity=0.356 Sum_probs=36.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
....+||-++.+..|...+. ++.+.-|.|.|..|+||||+|+.+++-.
T Consensus 15 pf~~ivGq~~~k~al~~~~~--~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVI--DPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CHHHHhChHHHHHHHHHhcc--CCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 33568998877776665544 3345667799999999999999997753
No 474
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=91.64 E-value=0.13 Score=45.19 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.3
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999887653
No 475
>PRK10646 ADP-binding protein; Provisional
Probab=91.62 E-value=0.24 Score=43.25 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=27.5
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 192 RIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 192 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+..++-+.|...-..-.+|.+.|-=|.||||+++.++..+
T Consensus 13 ~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 13 ATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3334444443222233589999999999999999998864
No 476
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.60 E-value=0.13 Score=48.70 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=25.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||++.++..... ..+.+++
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~ 61 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILL 61 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCC-CccEEEE
Confidence 468999999999999999998764322 3344443
No 477
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=91.59 E-value=0.13 Score=44.84 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=18.8
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|.|+|.+|+|||||+..+...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887653
No 478
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.58 E-value=0.13 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999988654
No 479
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.58 E-value=0.13 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 480
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.56 E-value=0.18 Score=51.28 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..-+|||.|..|.|||||++.+...+.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999866553
No 481
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.55 E-value=0.13 Score=47.84 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987643
No 482
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=91.55 E-value=0.13 Score=44.53 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988653
No 483
>PRK14526 adenylate kinase; Provisional
Probab=91.54 E-value=0.14 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEeccCcchhhhHHHHHHHhh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+.|+|++|+||||+|+.+...+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999987653
No 484
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=91.53 E-value=0.13 Score=44.86 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|.++|.+|+|||||...+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998774
No 485
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.53 E-value=0.12 Score=47.76 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4589999999999999999987643
No 486
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.52 E-value=0.14 Score=47.47 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++...
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999997643
No 487
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.52 E-value=0.12 Score=47.71 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=24.2
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
+++|+|..|.|||||++.++..... ..+.+++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~ 58 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP-SSGTIRI 58 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC-CccEEEE
Confidence 8999999999999999999764322 3444444
No 488
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.48 E-value=0.15 Score=49.03 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++|+|.|=||+||||+|..++..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 46888899999999999998887654
No 489
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.47 E-value=0.14 Score=47.99 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||++.++...
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4699999999999999999998643
No 490
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=91.45 E-value=0.14 Score=44.01 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.0
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 491
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.45 E-value=0.17 Score=47.60 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
-.+++|.|..|.|||||.+.++..+.
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999987654
No 492
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.43 E-value=0.2 Score=49.87 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=34.7
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...++|.+..++.|.-.+.. .+..-+.+.|.+|+||||||+.+..-+
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~--~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID--PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc--cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 35688999888877643321 122348999999999999999997754
No 493
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.41 E-value=0.18 Score=42.32 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.-.+|.+.|.=|.||||+++.++..+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34799999999999999999998864
No 494
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.39 E-value=0.23 Score=48.99 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=33.8
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc------ccceEeeeh
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE------FEGNCFLGN 243 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~ 243 (471)
.+.++|..+-..-.++-|+|.+|+||||||.+++...... =...+|++.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~t 137 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDT 137 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEEC
Confidence 4445555443456899999999999999999987664321 125677763
No 495
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.39 E-value=0.14 Score=47.61 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=25.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||.+.++.... ...+.+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~ 59 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLK-PTSGRATV 59 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEE
Confidence 46899999999999999999876432 23444444
No 496
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.39 E-value=0.14 Score=45.03 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=19.2
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.-|+|+|.+|+|||||...+..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4688999999999999988754
No 497
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=91.38 E-value=0.25 Score=50.03 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=27.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc-ccc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEG 237 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~ 237 (471)
..++|+|+|..|+|||||+..+...++.+ +..
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v 236 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRI 236 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 46799999999999999999999987664 443
No 498
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.37 E-value=0.14 Score=48.21 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=25.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||++.++..... ..+.+++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~ 60 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLYVA-QEGQISV 60 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEE
Confidence 468999999999999999998754322 2344444
No 499
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=91.36 E-value=0.16 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.1
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
+-|+|+|.+|+|||||+..+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999988764
No 500
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.35 E-value=0.14 Score=48.35 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=25.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||++.++..... ..+.+++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~ 61 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLERP-DSGTILF 61 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEE
Confidence 468999999999999999999765432 2344444
Done!