Query 041795
Match_columns 471
No_of_seqs 330 out of 2756
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 5E-48 1.7E-52 342.0 11.5 173 5-179 2-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 4.5E-48 1.6E-52 347.3 9.8 175 2-176 26-202 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 5E-37 1.7E-41 325.0 13.6 251 187-448 131-473 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 6.4E-34 2.2E-38 327.8 15.4 255 182-446 122-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 5.1E-33 1.7E-37 301.6 11.0 258 184-465 128-457 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 2E-31 6.8E-36 284.8 18.4 278 182-470 122-495 (591)
7 3h16_A TIR protein; bacteria T 100.0 1.4E-31 4.9E-36 235.3 3.2 119 7-126 16-134 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 4.1E-27 1.4E-31 204.0 3.3 138 3-142 2-145 (146)
9 2js7_A Myeloid differentiation 99.9 1.4E-23 4.7E-28 184.8 5.5 105 5-111 10-118 (160)
10 2j67_A TOLL like receptor 10; 99.9 3.7E-23 1.3E-27 184.9 3.3 103 6-110 30-136 (178)
11 1fyx_A TOLL-like receptor 2; b 99.9 1.9E-23 6.5E-28 182.0 1.0 100 8-109 2-105 (149)
12 1t3g_A X-linked interleukin-1 99.9 3.6E-22 1.2E-26 175.6 6.0 102 10-111 1-115 (159)
13 3j0a_A TOLL-like receptor 5; m 99.6 4.9E-16 1.7E-20 172.4 7.0 102 8-111 667-775 (844)
14 2qen_A Walker-type ATPase; unk 99.2 2.6E-10 9E-15 112.4 15.9 238 182-439 10-348 (350)
15 2fna_A Conserved hypothetical 99.2 3.4E-10 1.1E-14 111.9 15.3 240 182-439 11-356 (357)
16 1w5s_A Origin recognition comp 99.1 1.2E-10 4.3E-15 117.7 10.7 233 182-424 20-371 (412)
17 2qby_A CDC6 homolog 1, cell di 99.0 1.9E-09 6.4E-14 107.7 13.3 233 182-424 18-348 (386)
18 2qby_B CDC6 homolog 3, cell di 98.9 2.3E-08 7.8E-13 100.1 17.9 230 184-424 20-339 (384)
19 2v1u_A Cell division control p 98.9 4.8E-09 1.7E-13 104.8 12.7 236 182-424 17-351 (387)
20 1njg_A DNA polymerase III subu 98.8 2E-08 6.9E-13 93.0 11.6 134 183-319 22-200 (250)
21 1fnn_A CDC6P, cell division co 98.8 2.4E-08 8.2E-13 99.9 12.2 261 183-446 16-387 (389)
22 2chg_A Replication factor C sm 98.7 1.9E-08 6.4E-13 92.0 7.8 133 182-318 15-175 (226)
23 1iqp_A RFCS; clamp loader, ext 98.3 4.1E-07 1.4E-11 88.6 6.3 134 182-318 23-183 (327)
24 1sxj_B Activator 1 37 kDa subu 98.3 6.2E-07 2.1E-11 87.1 6.6 133 182-318 19-180 (323)
25 3h4m_A Proteasome-activating n 98.3 1.4E-06 4.7E-11 83.4 8.5 135 182-318 15-202 (285)
26 1jbk_A CLPB protein; beta barr 98.3 1.2E-06 4E-11 77.8 7.3 49 182-232 20-68 (195)
27 1hqc_A RUVB; extended AAA-ATPa 98.3 4.4E-06 1.5E-10 81.3 11.8 236 182-428 10-302 (324)
28 2chq_A Replication factor C sm 98.2 5.5E-06 1.9E-10 80.2 9.6 133 182-318 15-175 (319)
29 1jr3_A DNA polymerase III subu 98.1 6.4E-06 2.2E-10 81.7 10.0 133 182-317 14-191 (373)
30 3bos_A Putative DNA replicatio 98.1 2.9E-06 1E-10 78.4 7.0 133 182-318 26-188 (242)
31 3syl_A Protein CBBX; photosynt 98.1 6E-06 2E-10 79.8 8.7 130 185-318 32-218 (309)
32 3pfi_A Holliday junction ATP-d 98.1 1.4E-05 4.8E-10 78.3 10.9 249 182-438 27-327 (338)
33 3d8b_A Fidgetin-like protein 1 98.0 4.5E-05 1.5E-09 75.5 13.1 71 159-233 63-143 (357)
34 3n70_A Transport activator; si 98.0 4.4E-06 1.5E-10 71.6 4.9 98 185-284 2-115 (145)
35 1d2n_A N-ethylmaleimide-sensit 97.9 8.1E-05 2.8E-09 70.6 11.9 132 184-315 33-210 (272)
36 3eie_A Vacuolar protein sortin 97.9 7E-05 2.4E-09 73.0 11.5 133 182-318 16-198 (322)
37 2qz4_A Paraplegin; AAA+, SPG7, 97.9 2.4E-05 8.2E-10 73.5 7.7 134 182-317 4-190 (262)
38 1sxj_D Activator 1 41 kDa subu 97.8 1.7E-05 5.7E-10 78.0 6.1 134 182-318 35-206 (353)
39 2qp9_X Vacuolar protein sortin 97.8 9.3E-05 3.2E-09 73.2 10.7 132 182-317 49-230 (355)
40 2z4s_A Chromosomal replication 97.7 5.2E-05 1.8E-09 77.2 8.4 132 184-318 105-277 (440)
41 1l8q_A Chromosomal replication 97.7 5.3E-05 1.8E-09 73.8 7.7 132 184-318 11-180 (324)
42 3pvs_A Replication-associated 97.7 3.7E-05 1.3E-09 78.5 6.6 130 182-317 24-178 (447)
43 3cf0_A Transitional endoplasmi 97.7 0.00028 9.5E-09 68.0 12.5 130 183-317 14-199 (301)
44 2zan_A Vacuolar protein sortin 97.7 0.00021 7.3E-09 72.8 11.9 134 182-317 132-314 (444)
45 2r62_A Cell division protease 97.7 4.2E-05 1.4E-09 72.2 6.0 52 182-233 9-70 (268)
46 3uk6_A RUVB-like 2; hexameric 97.6 0.00027 9.1E-09 69.9 11.5 51 183-233 43-96 (368)
47 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00027 9.2E-09 68.8 11.3 132 182-317 10-192 (322)
48 1eiw_A Hypothetical protein MT 97.6 9.5E-05 3.3E-09 59.8 6.4 71 10-104 3-73 (111)
49 3u61_B DNA polymerase accessor 97.6 5.8E-05 2E-09 73.5 6.0 123 182-310 24-171 (324)
50 1sxj_E Activator 1 40 kDa subu 97.6 9E-05 3.1E-09 72.9 7.2 133 182-318 12-207 (354)
51 3vfd_A Spastin; ATPase, microt 97.6 0.00019 6.4E-09 71.9 9.3 53 182-234 113-175 (389)
52 1sxj_A Activator 1 95 kDa subu 97.5 0.0003 1E-08 73.2 10.7 130 182-318 37-223 (516)
53 2p65_A Hypothetical protein PF 97.5 6.9E-05 2.4E-09 66.0 5.0 50 182-233 20-69 (187)
54 3co5_A Putative two-component 97.5 1.7E-05 5.9E-10 67.6 0.3 49 184-232 4-52 (143)
55 2bjv_A PSP operon transcriptio 97.5 0.00022 7.6E-09 67.2 8.0 49 184-232 6-54 (265)
56 3hu3_A Transitional endoplasmi 97.5 0.00048 1.6E-08 70.9 10.7 132 184-317 204-385 (489)
57 3pxg_A Negative regulator of g 97.4 0.00051 1.8E-08 70.4 10.7 130 182-317 178-338 (468)
58 4b4t_J 26S protease regulatory 97.4 0.00052 1.8E-08 68.4 10.1 149 183-333 147-349 (405)
59 3ec2_A DNA replication protein 97.4 6.5E-05 2.2E-09 66.4 3.1 42 191-232 21-63 (180)
60 4fcw_A Chaperone protein CLPB; 97.4 0.00029 9.7E-09 67.9 7.6 49 184-232 17-72 (311)
61 2r44_A Uncharacterized protein 97.4 0.00044 1.5E-08 67.4 8.8 47 184-234 27-73 (331)
62 1qvr_A CLPB protein; coiled co 97.3 0.00032 1.1E-08 77.5 8.1 49 182-232 168-216 (854)
63 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00086 3E-08 73.1 11.3 49 182-232 184-232 (758)
64 1ojl_A Transcriptional regulat 97.3 0.00038 1.3E-08 67.2 7.5 48 184-231 2-49 (304)
65 4b4t_K 26S protease regulatory 97.3 0.0012 4.1E-08 66.6 11.1 52 184-235 172-234 (428)
66 4b4t_L 26S protease subunit RP 97.3 0.00069 2.4E-08 68.4 9.4 133 183-317 180-365 (437)
67 1sxj_C Activator 1 40 kDa subu 97.3 0.0006 2E-08 66.8 8.8 130 184-317 25-182 (340)
68 3b9p_A CG5977-PA, isoform A; A 97.3 0.00017 5.8E-09 69.1 4.7 53 182-234 19-81 (297)
69 3pxi_A Negative regulator of g 97.3 0.00057 2E-08 74.5 9.4 49 184-232 491-546 (758)
70 2gno_A DNA polymerase III, gam 97.3 0.00052 1.8E-08 66.3 8.0 124 189-317 2-152 (305)
71 4b4t_H 26S protease regulatory 97.3 0.00098 3.4E-08 67.3 9.9 53 183-235 208-271 (467)
72 4b4t_M 26S protease regulatory 97.2 0.00064 2.2E-08 68.6 8.5 149 183-333 180-382 (434)
73 1a5t_A Delta prime, HOLB; zinc 97.2 0.0019 6.4E-08 63.1 11.4 125 191-317 9-180 (334)
74 2ce7_A Cell division protein F 97.1 0.0015 5.2E-08 66.8 9.3 133 183-317 15-199 (476)
75 3pxi_A Negative regulator of g 97.0 0.0021 7.3E-08 70.0 10.7 130 182-317 178-338 (758)
76 4b4t_I 26S protease regulatory 97.0 0.0016 5.4E-08 65.2 8.2 148 184-333 182-383 (437)
77 3te6_A Regulatory protein SIR3 96.8 0.00059 2E-08 66.1 3.5 49 185-233 21-71 (318)
78 3cf2_A TER ATPase, transitiona 96.7 0.0048 1.6E-07 66.9 10.1 51 184-234 204-265 (806)
79 3m6a_A ATP-dependent protease 96.7 0.0023 7.8E-08 66.9 7.3 50 185-234 82-135 (543)
80 2w58_A DNAI, primosome compone 96.7 0.0019 6.4E-08 57.9 5.7 60 183-242 24-89 (202)
81 1lv7_A FTSH; alpha/beta domain 96.6 0.0013 4.5E-08 61.4 4.4 51 182-232 10-70 (257)
82 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0044 1.5E-07 67.5 8.2 49 184-232 458-513 (758)
83 1ofh_A ATP-dependent HSL prote 96.5 0.0012 4.1E-08 63.3 3.1 50 184-233 15-76 (310)
84 1in4_A RUVB, holliday junction 96.4 0.0016 5.6E-08 63.5 3.5 50 184-233 25-77 (334)
85 3hyn_A Putative signal transdu 96.3 0.02 6.9E-07 49.7 9.4 101 19-124 27-136 (189)
86 1qvr_A CLPB protein; coiled co 96.1 0.013 4.4E-07 64.6 9.1 47 185-231 559-612 (854)
87 1qhx_A CPT, protein (chloramph 96.1 0.0028 9.6E-08 55.4 2.9 25 208-232 4-28 (178)
88 3hws_A ATP-dependent CLP prote 96.1 0.0042 1.4E-07 61.3 4.5 48 186-233 17-77 (363)
89 3c8u_A Fructokinase; YP_612366 96.1 0.0049 1.7E-07 55.6 4.6 28 205-232 20-47 (208)
90 3kb2_A SPBC2 prophage-derived 96.0 0.0035 1.2E-07 54.2 3.1 25 208-232 2-26 (173)
91 1rz3_A Hypothetical protein rb 95.9 0.0062 2.1E-07 54.6 4.6 44 189-232 3-47 (201)
92 2c9o_A RUVB-like 1; hexameric 95.9 0.0062 2.1E-07 62.1 5.1 49 184-232 37-88 (456)
93 1ypw_A Transitional endoplasmi 95.9 0.0051 1.7E-07 67.3 4.5 52 183-234 203-265 (806)
94 3vaa_A Shikimate kinase, SK; s 95.8 0.0046 1.6E-07 55.3 3.1 25 207-231 25-49 (199)
95 3lw7_A Adenylate kinase relate 95.8 0.0044 1.5E-07 53.5 2.9 20 208-227 2-21 (179)
96 3trf_A Shikimate kinase, SK; a 95.8 0.0046 1.6E-07 54.4 3.0 25 207-231 5-29 (185)
97 1u0j_A DNA replication protein 95.7 0.036 1.2E-06 51.9 9.1 38 193-230 90-127 (267)
98 1odf_A YGR205W, hypothetical 3 95.7 0.0095 3.3E-07 56.8 5.2 30 204-233 28-57 (290)
99 1ly1_A Polynucleotide kinase; 95.6 0.0062 2.1E-07 53.1 3.2 22 208-229 3-24 (181)
100 1ixz_A ATP-dependent metallopr 95.5 0.0058 2E-07 56.9 2.9 50 183-232 15-74 (254)
101 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0098 3.4E-07 58.1 4.5 45 191-235 6-52 (359)
102 1kag_A SKI, shikimate kinase I 95.5 0.0054 1.8E-07 53.2 2.4 25 208-232 5-29 (173)
103 1zp6_A Hypothetical protein AT 95.4 0.0074 2.5E-07 53.3 3.1 24 207-230 9-32 (191)
104 3t15_A Ribulose bisphosphate c 95.4 0.0084 2.9E-07 57.3 3.7 29 206-234 35-63 (293)
105 1um8_A ATP-dependent CLP prote 95.4 0.011 3.6E-07 58.6 4.5 27 207-233 72-98 (376)
106 1nks_A Adenylate kinase; therm 95.4 0.0082 2.8E-07 52.9 3.2 26 208-233 2-27 (194)
107 2rhm_A Putative kinase; P-loop 95.4 0.01 3.6E-07 52.3 3.8 25 207-231 5-29 (193)
108 1iy2_A ATP-dependent metallopr 95.3 0.0084 2.9E-07 56.7 3.3 51 182-232 38-98 (278)
109 3uie_A Adenylyl-sulfate kinase 95.3 0.0099 3.4E-07 53.1 3.7 27 206-232 24-50 (200)
110 2kjq_A DNAA-related protein; s 95.3 0.0099 3.4E-07 50.7 3.4 28 206-233 35-62 (149)
111 3iij_A Coilin-interacting nucl 95.3 0.0065 2.2E-07 53.2 2.3 25 207-231 11-35 (180)
112 3t61_A Gluconokinase; PSI-biol 95.3 0.0067 2.3E-07 54.3 2.4 25 207-231 18-42 (202)
113 1zuh_A Shikimate kinase; alpha 95.3 0.009 3.1E-07 51.7 3.2 26 207-232 7-32 (168)
114 2x8a_A Nuclear valosin-contain 95.3 0.014 4.7E-07 55.2 4.6 50 184-233 10-70 (274)
115 3tlx_A Adenylate kinase 2; str 95.3 0.012 4.1E-07 54.5 4.0 26 206-231 28-53 (243)
116 2ze6_A Isopentenyl transferase 95.2 0.0097 3.3E-07 55.5 3.3 25 208-232 2-26 (253)
117 1kht_A Adenylate kinase; phosp 95.2 0.0097 3.3E-07 52.3 3.1 25 208-232 4-28 (192)
118 2jaq_A Deoxyguanosine kinase; 95.2 0.009 3.1E-07 53.2 2.9 24 209-232 2-25 (205)
119 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.01 3.6E-07 61.0 3.7 44 184-231 22-65 (500)
120 1g8p_A Magnesium-chelatase 38 95.2 0.011 3.6E-07 57.7 3.5 49 182-232 22-70 (350)
121 1knq_A Gluconate kinase; ALFA/ 95.2 0.014 4.7E-07 50.8 3.9 25 207-231 8-32 (175)
122 1via_A Shikimate kinase; struc 95.1 0.0096 3.3E-07 51.9 2.8 24 209-232 6-29 (175)
123 2vli_A Antibiotic resistance p 95.1 0.0091 3.1E-07 52.2 2.7 26 207-232 5-30 (183)
124 1kgd_A CASK, peripheral plasma 95.1 0.011 3.8E-07 51.9 3.3 26 207-232 5-30 (180)
125 2iyv_A Shikimate kinase, SK; t 95.1 0.0083 2.8E-07 52.7 2.3 24 208-231 3-26 (184)
126 1tev_A UMP-CMP kinase; ploop, 95.1 0.012 4.2E-07 51.8 3.4 25 207-231 3-27 (196)
127 4eun_A Thermoresistant glucoki 95.0 0.012 4.2E-07 52.5 3.3 26 206-231 28-53 (200)
128 2c95_A Adenylate kinase 1; tra 95.0 0.011 3.9E-07 52.2 3.0 25 207-231 9-33 (196)
129 1ukz_A Uridylate kinase; trans 95.0 0.015 5E-07 52.0 3.7 26 206-231 14-39 (203)
130 1y63_A LMAJ004144AAA protein; 95.0 0.013 4.5E-07 51.6 3.3 24 207-230 10-33 (184)
131 1ex7_A Guanylate kinase; subst 95.0 0.0096 3.3E-07 52.8 2.4 28 208-235 2-29 (186)
132 3a00_A Guanylate kinase, GMP k 95.0 0.01 3.5E-07 52.4 2.6 28 208-235 2-29 (186)
133 2bdt_A BH3686; alpha-beta prot 95.0 0.012 4.2E-07 51.8 3.2 22 208-229 3-24 (189)
134 2yvu_A Probable adenylyl-sulfa 95.0 0.02 6.8E-07 50.4 4.5 28 206-233 12-39 (186)
135 1gvn_B Zeta; postsegregational 94.9 0.021 7.2E-07 54.3 4.8 26 206-231 32-57 (287)
136 2qgz_A Helicase loader, putati 94.9 0.026 9E-07 54.2 5.5 41 192-232 136-177 (308)
137 1e6c_A Shikimate kinase; phosp 94.9 0.011 3.6E-07 51.3 2.5 24 208-231 3-26 (173)
138 3cm0_A Adenylate kinase; ATP-b 94.9 0.014 4.8E-07 51.2 3.3 24 208-231 5-28 (186)
139 2qor_A Guanylate kinase; phosp 94.9 0.011 3.6E-07 53.1 2.4 26 207-232 12-37 (204)
140 3tau_A Guanylate kinase, GMP k 94.9 0.014 4.9E-07 52.5 3.3 27 206-232 7-33 (208)
141 1uf9_A TT1252 protein; P-loop, 94.9 0.014 4.9E-07 51.8 3.3 26 205-230 6-31 (203)
142 3tr0_A Guanylate kinase, GMP k 94.9 0.012 4.3E-07 52.4 2.9 25 207-231 7-31 (205)
143 1qf9_A UMP/CMP kinase, protein 94.9 0.018 6.2E-07 50.6 3.9 25 207-231 6-30 (194)
144 2bwj_A Adenylate kinase 5; pho 94.9 0.013 4.4E-07 52.0 2.9 26 207-232 12-37 (199)
145 1cke_A CK, MSSA, protein (cyti 94.8 0.014 4.7E-07 53.1 3.1 24 208-231 6-29 (227)
146 2plr_A DTMP kinase, probable t 94.8 0.015 5.2E-07 52.0 3.3 26 208-233 5-30 (213)
147 2j41_A Guanylate kinase; GMP, 94.8 0.015 5.1E-07 51.9 3.2 25 207-231 6-30 (207)
148 2if2_A Dephospho-COA kinase; a 94.8 0.013 4.4E-07 52.4 2.8 22 208-229 2-23 (204)
149 2pt5_A Shikimate kinase, SK; a 94.8 0.016 5.3E-07 50.0 3.2 24 209-232 2-25 (168)
150 2p5t_B PEZT; postsegregational 94.8 0.024 8.3E-07 52.7 4.7 27 206-232 31-57 (253)
151 3dm5_A SRP54, signal recogniti 94.8 0.13 4.3E-06 51.9 10.1 28 206-233 99-126 (443)
152 1xjc_A MOBB protein homolog; s 94.7 0.016 5.6E-07 50.4 3.2 28 207-234 4-31 (169)
153 2bbw_A Adenylate kinase 4, AK4 94.7 0.016 5.5E-07 53.6 3.3 25 207-231 27-51 (246)
154 2qt1_A Nicotinamide riboside k 94.7 0.016 5.4E-07 52.0 3.2 26 206-231 20-45 (207)
155 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.017 5.9E-07 54.0 3.5 26 207-232 4-29 (260)
156 1uj2_A Uridine-cytidine kinase 94.7 0.018 6E-07 53.6 3.5 27 206-232 21-47 (252)
157 1tue_A Replication protein E1; 94.7 0.027 9.3E-07 50.5 4.6 40 193-233 45-84 (212)
158 2pbr_A DTMP kinase, thymidylat 94.7 0.016 5.6E-07 51.0 3.1 24 209-232 2-25 (195)
159 2dhr_A FTSH; AAA+ protein, hex 94.7 0.029 1E-06 57.6 5.4 131 182-317 29-214 (499)
160 3asz_A Uridine kinase; cytidin 94.7 0.017 5.6E-07 52.0 3.2 27 206-232 5-31 (211)
161 1nn5_A Similar to deoxythymidy 94.7 0.018 6E-07 51.7 3.4 27 207-233 9-35 (215)
162 2cdn_A Adenylate kinase; phosp 94.7 0.017 5.9E-07 51.5 3.2 25 207-231 20-44 (201)
163 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.025 8.5E-07 51.3 4.4 39 194-232 10-48 (235)
164 4gp7_A Metallophosphoesterase; 94.7 0.013 4.4E-07 51.1 2.3 22 207-228 9-30 (171)
165 3tqc_A Pantothenate kinase; bi 94.6 0.025 8.6E-07 54.6 4.5 46 187-232 70-117 (321)
166 1jjv_A Dephospho-COA kinase; P 94.6 0.015 5.2E-07 52.0 2.8 22 208-229 3-24 (206)
167 3jvv_A Twitching mobility prot 94.6 0.035 1.2E-06 54.5 5.5 79 208-289 124-235 (356)
168 1aky_A Adenylate kinase; ATP:A 94.6 0.018 6.2E-07 52.2 3.1 26 207-232 4-29 (220)
169 1n0w_A DNA repair protein RAD5 94.5 0.029 1E-06 51.3 4.5 37 194-230 11-47 (243)
170 1g41_A Heat shock protein HSLU 94.5 0.029 9.9E-07 56.6 4.7 51 184-234 15-77 (444)
171 2wwf_A Thymidilate kinase, put 94.5 0.018 6.3E-07 51.6 3.0 27 207-233 10-36 (212)
172 2grj_A Dephospho-COA kinase; T 94.5 0.021 7.1E-07 50.9 3.3 25 206-230 11-35 (192)
173 4a74_A DNA repair and recombin 94.5 0.019 6.6E-07 52.0 3.2 37 195-231 13-49 (231)
174 3umf_A Adenylate kinase; rossm 94.5 0.023 7.9E-07 51.7 3.6 27 205-231 27-53 (217)
175 2dr3_A UPF0273 protein PH0284; 94.4 0.022 7.6E-07 52.2 3.6 37 206-242 22-58 (247)
176 2cvh_A DNA repair and recombin 94.4 0.025 8.7E-07 50.8 3.8 35 195-229 8-42 (220)
177 1ye8_A Protein THEP1, hypothet 94.4 0.022 7.4E-07 50.1 3.1 24 209-232 2-25 (178)
178 2pez_A Bifunctional 3'-phospho 94.4 0.025 8.5E-07 49.4 3.5 26 207-232 5-30 (179)
179 1gtv_A TMK, thymidylate kinase 94.4 0.014 4.9E-07 52.4 2.0 24 209-232 2-25 (214)
180 3e70_C DPA, signal recognition 94.3 0.051 1.8E-06 52.7 6.0 28 206-233 128-155 (328)
181 3fb4_A Adenylate kinase; psych 94.3 0.022 7.6E-07 51.3 3.2 23 209-231 2-24 (216)
182 2hf9_A Probable hydrogenase ni 94.3 0.03 1E-06 50.7 4.0 38 193-232 26-63 (226)
183 3nwj_A ATSK2; P loop, shikimat 94.2 0.018 6.3E-07 53.6 2.5 25 208-232 49-73 (250)
184 2z0h_A DTMP kinase, thymidylat 94.2 0.024 8.3E-07 50.0 3.2 24 209-232 2-25 (197)
185 1zu4_A FTSY; GTPase, signal re 94.2 0.062 2.1E-06 51.9 6.3 29 206-234 104-132 (320)
186 3ney_A 55 kDa erythrocyte memb 94.2 0.023 8E-07 50.8 3.0 27 206-232 18-44 (197)
187 4e22_A Cytidylate kinase; P-lo 94.2 0.023 8E-07 52.8 3.1 25 207-231 27-51 (252)
188 3dl0_A Adenylate kinase; phosp 94.2 0.024 8.1E-07 51.2 3.0 23 209-231 2-24 (216)
189 1vma_A Cell division protein F 94.2 0.061 2.1E-06 51.6 6.1 29 206-234 103-131 (306)
190 3bh0_A DNAB-like replicative h 94.2 0.065 2.2E-06 51.6 6.3 50 192-242 54-103 (315)
191 1lvg_A Guanylate kinase, GMP k 94.2 0.019 6.5E-07 51.3 2.3 25 208-232 5-29 (198)
192 1zd8_A GTP:AMP phosphotransfer 94.2 0.022 7.5E-07 51.9 2.8 25 207-231 7-31 (227)
193 1rj9_A FTSY, signal recognitio 94.1 0.039 1.3E-06 52.9 4.6 29 206-234 101-129 (304)
194 1zak_A Adenylate kinase; ATP:A 94.1 0.021 7.1E-07 51.8 2.5 26 207-232 5-30 (222)
195 3p32_A Probable GTPase RV1496/ 94.1 0.065 2.2E-06 52.5 6.2 39 194-232 66-104 (355)
196 2v54_A DTMP kinase, thymidylat 94.1 0.024 8.1E-07 50.5 2.8 25 207-231 4-28 (204)
197 3aez_A Pantothenate kinase; tr 94.0 0.029 9.9E-07 54.1 3.5 28 205-232 88-115 (312)
198 2wsm_A Hydrogenase expression/ 94.0 0.034 1.1E-06 50.1 3.7 42 190-233 15-56 (221)
199 1m7g_A Adenylylsulfate kinase; 94.0 0.03 1E-06 50.4 3.4 26 207-232 25-50 (211)
200 2jeo_A Uridine-cytidine kinase 94.0 0.031 1.1E-06 51.7 3.5 26 206-231 24-49 (245)
201 1znw_A Guanylate kinase, GMP k 93.9 0.027 9.3E-07 50.5 2.9 25 207-231 20-44 (207)
202 3hr8_A Protein RECA; alpha and 93.9 0.044 1.5E-06 53.7 4.6 50 193-242 46-96 (356)
203 3ake_A Cytidylate kinase; CMP 93.8 0.033 1.1E-06 49.6 3.2 24 209-232 4-27 (208)
204 1vht_A Dephospho-COA kinase; s 93.8 0.036 1.2E-06 50.0 3.5 23 207-229 4-26 (218)
205 3be4_A Adenylate kinase; malar 93.8 0.027 9.2E-07 51.0 2.6 24 208-231 6-29 (217)
206 1j8m_F SRP54, signal recogniti 93.8 0.086 2.9E-06 50.3 6.2 27 207-233 98-124 (297)
207 2f6r_A COA synthase, bifunctio 93.8 0.033 1.1E-06 52.8 3.2 24 206-229 74-97 (281)
208 2zr9_A Protein RECA, recombina 93.7 0.047 1.6E-06 53.4 4.3 50 193-242 46-96 (349)
209 1z6g_A Guanylate kinase; struc 93.7 0.027 9.1E-07 51.2 2.3 25 207-231 23-47 (218)
210 3d3q_A TRNA delta(2)-isopenten 93.6 0.036 1.2E-06 53.8 3.3 25 208-232 8-32 (340)
211 3lnc_A Guanylate kinase, GMP k 93.6 0.028 9.5E-07 51.4 2.3 25 207-231 27-52 (231)
212 2ehv_A Hypothetical protein PH 93.6 0.05 1.7E-06 49.9 4.1 25 206-230 29-53 (251)
213 1u94_A RECA protein, recombina 93.5 0.053 1.8E-06 53.2 4.4 51 193-243 48-99 (356)
214 2f1r_A Molybdopterin-guanine d 93.5 0.032 1.1E-06 48.7 2.5 26 208-233 3-28 (171)
215 1a7j_A Phosphoribulokinase; tr 93.5 0.034 1.2E-06 53.0 2.9 27 206-232 4-30 (290)
216 1htw_A HI0065; nucleotide-bind 93.5 0.069 2.4E-06 45.9 4.6 26 206-231 32-57 (158)
217 3kl4_A SRP54, signal recogniti 93.5 0.082 2.8E-06 53.2 5.7 28 206-233 96-123 (433)
218 1e4v_A Adenylate kinase; trans 93.5 0.037 1.3E-06 49.8 3.0 23 209-231 2-24 (214)
219 2xb4_A Adenylate kinase; ATP-b 93.5 0.039 1.3E-06 50.2 3.1 23 209-231 2-24 (223)
220 1ak2_A Adenylate kinase isoenz 93.4 0.039 1.3E-06 50.5 3.1 26 207-232 16-41 (233)
221 2og2_A Putative signal recogni 93.4 0.091 3.1E-06 51.6 5.9 28 206-233 156-183 (359)
222 3r20_A Cytidylate kinase; stru 93.4 0.04 1.4E-06 50.6 3.1 25 207-231 9-33 (233)
223 3a8t_A Adenylate isopentenyltr 93.4 0.032 1.1E-06 54.1 2.5 26 207-232 40-65 (339)
224 3crm_A TRNA delta(2)-isopenten 93.4 0.038 1.3E-06 53.3 3.0 25 208-232 6-30 (323)
225 2xxa_A Signal recognition part 93.4 0.067 2.3E-06 53.9 4.9 29 206-234 99-127 (433)
226 2eyu_A Twitching motility prot 93.4 0.06 2E-06 50.4 4.3 35 206-240 24-58 (261)
227 2i3b_A HCR-ntpase, human cance 93.3 0.038 1.3E-06 49.1 2.6 24 209-232 3-26 (189)
228 1puj_A YLQF, conserved hypothe 93.3 0.79 2.7E-05 43.2 12.1 35 55-90 13-47 (282)
229 3b9q_A Chloroplast SRP recepto 93.3 0.068 2.3E-06 51.2 4.6 28 206-233 99-126 (302)
230 1s96_A Guanylate kinase, GMP k 93.3 0.041 1.4E-06 50.1 2.9 26 207-232 16-41 (219)
231 3k1j_A LON protease, ATP-depen 93.2 0.061 2.1E-06 56.7 4.6 47 184-234 41-87 (604)
232 2yhs_A FTSY, cell division pro 93.2 0.1 3.5E-06 53.2 6.0 28 206-233 292-319 (503)
233 1np6_A Molybdopterin-guanine d 93.2 0.048 1.6E-06 47.7 3.1 26 207-232 6-31 (174)
234 2px0_A Flagellar biosynthesis 93.2 0.047 1.6E-06 52.2 3.3 27 206-232 104-130 (296)
235 3sr0_A Adenylate kinase; phosp 93.1 0.049 1.7E-06 49.1 3.2 23 209-231 2-24 (206)
236 4a1f_A DNAB helicase, replicat 93.1 0.11 3.7E-06 50.5 5.8 53 188-241 28-80 (338)
237 1sq5_A Pantothenate kinase; P- 93.1 0.049 1.7E-06 52.3 3.3 28 205-232 78-105 (308)
238 1ltq_A Polynucleotide kinase; 93.1 0.047 1.6E-06 51.9 3.2 23 208-230 3-25 (301)
239 3fwy_A Light-independent proto 93.0 0.056 1.9E-06 52.1 3.6 29 205-233 46-74 (314)
240 1q3t_A Cytidylate kinase; nucl 92.9 0.06 2.1E-06 49.3 3.5 26 206-231 15-40 (236)
241 2v3c_C SRP54, signal recogniti 92.9 0.078 2.7E-06 53.5 4.5 27 207-233 99-125 (432)
242 1svm_A Large T antigen; AAA+ f 92.9 0.078 2.7E-06 52.4 4.4 29 203-231 165-193 (377)
243 2vhj_A Ntpase P4, P4; non- hyd 92.9 0.057 1.9E-06 52.0 3.3 24 207-230 123-146 (331)
244 1cr0_A DNA primase/helicase; R 92.9 0.089 3E-06 49.9 4.8 29 206-234 34-62 (296)
245 3b85_A Phosphate starvation-in 92.8 0.05 1.7E-06 49.1 2.7 23 208-230 23-45 (208)
246 1v5w_A DMC1, meiotic recombina 92.7 0.13 4.3E-06 50.2 5.7 38 194-231 109-146 (343)
247 3zvl_A Bifunctional polynucleo 92.7 0.053 1.8E-06 54.5 3.0 26 206-231 257-282 (416)
248 1g8f_A Sulfate adenylyltransfe 92.7 0.079 2.7E-06 54.5 4.3 47 187-233 375-421 (511)
249 2onk_A Molybdate/tungstate ABC 92.7 0.055 1.9E-06 50.0 2.9 26 205-231 23-48 (240)
250 1ypw_A Transitional endoplasmi 92.6 0.052 1.8E-06 59.3 3.0 133 183-317 476-661 (806)
251 2z43_A DNA repair and recombin 92.6 0.089 3E-06 50.8 4.4 38 194-231 94-131 (324)
252 3exa_A TRNA delta(2)-isopenten 92.6 0.061 2.1E-06 51.6 3.1 26 207-232 3-28 (322)
253 2j37_W Signal recognition part 92.5 0.1 3.5E-06 53.5 4.8 28 206-233 100-127 (504)
254 1pzn_A RAD51, DNA repair and r 92.4 0.065 2.2E-06 52.4 3.2 37 195-231 119-155 (349)
255 2r6a_A DNAB helicase, replicat 92.4 0.17 5.7E-06 51.3 6.4 49 193-242 190-239 (454)
256 3io5_A Recombination and repai 92.4 0.12 4.2E-06 49.5 5.0 35 209-243 30-66 (333)
257 3tif_A Uncharacterized ABC tra 92.3 0.059 2E-06 49.6 2.6 24 207-230 31-54 (235)
258 3cr8_A Sulfate adenylyltranfer 92.3 0.095 3.3E-06 54.5 4.4 27 207-233 369-395 (552)
259 3foz_A TRNA delta(2)-isopenten 92.3 0.085 2.9E-06 50.5 3.7 27 206-232 9-35 (316)
260 2pcj_A ABC transporter, lipopr 92.3 0.051 1.7E-06 49.6 2.1 24 207-230 30-53 (224)
261 1nlf_A Regulatory protein REPA 92.2 0.099 3.4E-06 49.2 4.1 26 207-232 30-55 (279)
262 2dyk_A GTP-binding protein; GT 92.2 0.081 2.8E-06 44.5 3.2 23 208-230 2-24 (161)
263 2zts_A Putative uncharacterize 92.2 0.061 2.1E-06 49.3 2.5 37 206-242 29-66 (251)
264 1xp8_A RECA protein, recombina 92.2 0.1 3.5E-06 51.3 4.3 50 193-242 59-109 (366)
265 4eaq_A DTMP kinase, thymidylat 92.1 0.083 2.8E-06 48.3 3.4 28 206-233 25-52 (229)
266 2qi9_C Vitamin B12 import ATP- 92.1 0.061 2.1E-06 50.0 2.4 34 207-242 26-59 (249)
267 1oix_A RAS-related protein RAB 92.1 0.07 2.4E-06 47.0 2.8 24 207-230 29-52 (191)
268 1ls1_A Signal recognition part 92.1 0.12 4.1E-06 49.2 4.6 28 206-233 97-124 (295)
269 2cbz_A Multidrug resistance-as 92.0 0.06 2.1E-06 49.6 2.3 25 207-231 31-55 (237)
270 1yrb_A ATP(GTP)binding protein 92.0 0.16 5.3E-06 47.0 5.2 27 206-232 13-39 (262)
271 2ged_A SR-beta, signal recogni 92.0 0.13 4.4E-06 44.9 4.3 25 206-230 47-71 (193)
272 2d2e_A SUFC protein; ABC-ATPas 92.0 0.073 2.5E-06 49.4 2.8 24 207-230 29-52 (250)
273 3gfo_A Cobalt import ATP-bindi 91.9 0.063 2.1E-06 50.7 2.3 25 207-231 34-58 (275)
274 1b0u_A Histidine permease; ABC 91.9 0.063 2.2E-06 50.3 2.3 25 207-231 32-56 (262)
275 2f9l_A RAB11B, member RAS onco 91.9 0.077 2.6E-06 46.9 2.7 24 207-230 5-28 (199)
276 2p67_A LAO/AO transport system 91.9 0.19 6.4E-06 48.9 5.7 29 204-232 53-81 (341)
277 2qmh_A HPR kinase/phosphorylas 91.8 0.082 2.8E-06 47.2 2.8 24 207-230 34-57 (205)
278 2zu0_C Probable ATP-dependent 91.8 0.077 2.6E-06 49.8 2.8 24 207-230 46-69 (267)
279 1ji0_A ABC transporter; ATP bi 91.8 0.067 2.3E-06 49.3 2.3 25 207-231 32-56 (240)
280 4g1u_C Hemin import ATP-bindin 91.8 0.066 2.2E-06 50.3 2.3 25 207-231 37-61 (266)
281 1g6h_A High-affinity branched- 91.7 0.068 2.3E-06 49.9 2.3 25 207-231 33-57 (257)
282 2q6t_A DNAB replication FORK h 91.7 0.26 8.9E-06 49.8 6.8 54 188-242 182-236 (444)
283 1mv5_A LMRA, multidrug resista 91.6 0.076 2.6E-06 49.1 2.5 35 206-241 27-61 (243)
284 2wji_A Ferrous iron transport 91.6 0.096 3.3E-06 44.7 3.0 22 208-229 4-25 (165)
285 2olj_A Amino acid ABC transpor 91.6 0.071 2.4E-06 50.0 2.3 26 206-231 49-74 (263)
286 2ocp_A DGK, deoxyguanosine kin 91.6 0.097 3.3E-06 48.0 3.2 26 207-232 2-27 (241)
287 2pze_A Cystic fibrosis transme 91.6 0.073 2.5E-06 48.7 2.3 25 207-231 34-58 (229)
288 2v9p_A Replication protein E1; 91.6 0.14 4.8E-06 49.0 4.3 27 205-231 124-150 (305)
289 2ff7_A Alpha-hemolysin translo 91.6 0.073 2.5E-06 49.3 2.3 34 207-241 35-68 (247)
290 1sgw_A Putative ABC transporte 91.5 0.062 2.1E-06 48.7 1.7 25 207-231 35-59 (214)
291 2axn_A 6-phosphofructo-2-kinas 91.5 0.11 3.8E-06 53.7 3.8 27 206-232 34-60 (520)
292 2ce2_X GTPase HRAS; signaling 91.4 0.088 3E-06 44.3 2.5 22 209-230 5-26 (166)
293 1vpl_A ABC transporter, ATP-bi 91.4 0.077 2.6E-06 49.5 2.3 25 207-231 41-65 (256)
294 3lda_A DNA repair protein RAD5 91.4 0.089 3E-06 52.4 2.9 38 193-230 164-201 (400)
295 2zej_A Dardarin, leucine-rich 91.4 0.084 2.9E-06 46.0 2.4 21 209-229 4-24 (184)
296 2ghi_A Transport protein; mult 91.3 0.079 2.7E-06 49.5 2.3 34 207-242 46-79 (260)
297 2ixe_A Antigen peptide transpo 91.3 0.08 2.7E-06 49.8 2.3 34 207-241 45-78 (271)
298 3gmt_A Adenylate kinase; ssgci 91.3 0.1 3.5E-06 47.8 2.9 24 208-231 9-32 (230)
299 3bgw_A DNAB-like replicative h 91.3 0.23 7.9E-06 50.2 5.8 50 192-242 183-232 (444)
300 2qm8_A GTPase/ATPase; G protei 91.2 0.26 9E-06 47.8 6.0 28 205-232 53-80 (337)
301 2h92_A Cytidylate kinase; ross 91.2 0.09 3.1E-06 47.3 2.5 24 208-231 4-27 (219)
302 2yz2_A Putative ABC transporte 91.2 0.082 2.8E-06 49.6 2.3 25 207-231 33-57 (266)
303 3eph_A TRNA isopentenyltransfe 91.2 0.11 3.6E-06 51.7 3.1 25 208-232 3-27 (409)
304 3con_A GTPase NRAS; structural 91.2 0.1 3.4E-06 45.5 2.7 23 208-230 22-44 (190)
305 3end_A Light-independent proto 91.2 0.18 6.1E-06 48.0 4.7 30 205-234 39-68 (307)
306 2ihy_A ABC transporter, ATP-bi 91.1 0.086 2.9E-06 49.8 2.3 25 207-231 47-71 (279)
307 1z2a_A RAS-related protein RAB 91.1 0.13 4.5E-06 43.4 3.3 24 207-230 5-28 (168)
308 2nq2_C Hypothetical ABC transp 91.1 0.089 3E-06 49.0 2.3 24 207-230 31-54 (253)
309 2wjg_A FEOB, ferrous iron tran 91.0 0.11 3.8E-06 45.1 2.8 24 207-230 7-30 (188)
310 2vp4_A Deoxynucleoside kinase; 91.0 0.085 2.9E-06 48.1 2.1 25 206-230 19-43 (230)
311 1cp2_A CP2, nitrogenase iron p 90.9 0.19 6.4E-06 46.8 4.4 27 208-234 2-28 (269)
312 1u8z_A RAS-related protein RAL 90.9 0.12 3.9E-06 43.7 2.7 23 208-230 5-27 (168)
313 1fzq_A ADP-ribosylation factor 90.7 0.17 5.8E-06 43.9 3.7 26 205-230 14-39 (181)
314 1c1y_A RAS-related protein RAP 90.7 0.12 4.1E-06 43.6 2.7 22 209-230 5-26 (167)
315 3sop_A Neuronal-specific septi 90.7 0.12 4E-06 48.6 2.8 23 209-231 4-26 (270)
316 3fdi_A Uncharacterized protein 90.7 0.13 4.4E-06 46.0 3.0 25 208-232 7-31 (201)
317 3nh6_A ATP-binding cassette SU 90.7 0.11 3.8E-06 49.7 2.7 26 206-231 79-104 (306)
318 1m8p_A Sulfate adenylyltransfe 90.7 0.22 7.6E-06 52.0 5.1 27 206-232 395-421 (573)
319 1bif_A 6-phosphofructo-2-kinas 90.6 0.14 4.9E-06 52.1 3.6 27 207-233 39-65 (469)
320 2orw_A Thymidine kinase; TMTK, 90.6 0.19 6.5E-06 44.2 3.9 24 208-231 4-27 (184)
321 1kao_A RAP2A; GTP-binding prot 90.6 0.13 4.3E-06 43.4 2.7 23 208-230 4-26 (167)
322 1r8s_A ADP-ribosylation factor 90.5 0.13 4.6E-06 43.3 2.8 21 210-230 3-23 (164)
323 3t1o_A Gliding protein MGLA; G 90.5 0.13 4.6E-06 44.7 2.9 26 207-232 14-39 (198)
324 1z08_A RAS-related protein RAB 90.5 0.13 4.4E-06 43.7 2.7 24 207-230 6-29 (170)
325 3f9v_A Minichromosome maintena 90.5 0.075 2.6E-06 55.9 1.4 48 184-231 295-351 (595)
326 1ek0_A Protein (GTP-binding pr 90.4 0.13 4.5E-06 43.5 2.7 22 209-230 5-26 (170)
327 2lkc_A Translation initiation 90.4 0.15 5.1E-06 43.7 3.1 25 206-230 7-31 (178)
328 3kta_A Chromosome segregation 90.4 0.13 4.4E-06 44.7 2.6 24 208-231 27-50 (182)
329 2erx_A GTP-binding protein DI- 90.4 0.12 4.1E-06 43.8 2.4 22 208-229 4-25 (172)
330 1z0j_A RAB-22, RAS-related pro 90.4 0.14 4.6E-06 43.5 2.7 23 208-230 7-29 (170)
331 1m7b_A RND3/RHOE small GTP-bin 90.3 0.13 4.3E-06 44.8 2.5 24 207-230 7-30 (184)
332 1lw7_A Transcriptional regulat 90.3 0.15 5.1E-06 50.1 3.3 26 207-232 170-195 (365)
333 3q85_A GTP-binding protein REM 90.3 0.13 4.4E-06 43.7 2.6 22 208-229 3-24 (169)
334 3cf2_A TER ATPase, transitiona 90.3 0.13 4.3E-06 55.9 3.0 51 184-234 477-538 (806)
335 2pjz_A Hypothetical protein ST 90.3 0.11 3.9E-06 48.5 2.3 33 207-241 30-62 (263)
336 1nrj_B SR-beta, signal recogni 90.3 0.16 5.5E-06 45.4 3.3 25 206-230 11-35 (218)
337 1nij_A Hypothetical protein YJ 90.2 0.14 4.9E-06 49.2 3.1 26 206-231 3-28 (318)
338 2gks_A Bifunctional SAT/APS ki 90.2 0.22 7.4E-06 51.8 4.6 45 188-232 353-397 (546)
339 1tq4_A IIGP1, interferon-induc 90.2 0.11 3.9E-06 51.8 2.4 25 206-230 68-92 (413)
340 2iwr_A Centaurin gamma 1; ANK 90.2 0.13 4.4E-06 44.2 2.5 23 208-230 8-30 (178)
341 2ewv_A Twitching motility prot 90.2 0.2 7E-06 49.3 4.2 34 206-239 135-168 (372)
342 1p5z_B DCK, deoxycytidine kina 90.2 0.083 2.8E-06 49.2 1.3 26 206-231 23-48 (263)
343 1ky3_A GTP-binding protein YPT 90.2 0.14 4.9E-06 43.9 2.7 25 206-230 7-31 (182)
344 2ffh_A Protein (FFH); SRP54, s 90.1 0.25 8.5E-06 49.6 4.8 29 206-234 97-125 (425)
345 3ihw_A Centg3; RAS, centaurin, 90.1 0.14 4.8E-06 44.6 2.7 24 207-230 20-43 (184)
346 2nzj_A GTP-binding protein REM 90.1 0.18 6.1E-06 43.0 3.3 24 207-230 4-27 (175)
347 2gj8_A MNME, tRNA modification 90.1 0.12 4.2E-06 44.5 2.2 23 208-230 5-27 (172)
348 1r2q_A RAS-related protein RAB 90.1 0.15 5.1E-06 43.1 2.7 23 208-230 7-29 (170)
349 3q72_A GTP-binding protein RAD 90.1 0.12 4.3E-06 43.6 2.2 21 209-229 4-24 (166)
350 2r8r_A Sensor protein; KDPD, P 90.0 0.23 7.9E-06 45.2 4.0 25 209-233 8-32 (228)
351 2afh_E Nitrogenase iron protei 90.0 0.25 8.4E-06 46.6 4.5 26 208-233 3-28 (289)
352 2hxs_A RAB-26, RAS-related pro 90.0 0.15 5E-06 43.7 2.7 24 207-230 6-29 (178)
353 2i1q_A DNA repair and recombin 90.0 0.16 5.5E-06 48.8 3.2 37 194-230 85-121 (322)
354 1wms_A RAB-9, RAB9, RAS-relate 90.0 0.15 5.1E-06 43.6 2.7 24 207-230 7-30 (177)
355 3def_A T7I23.11 protein; chlor 89.9 0.24 8.3E-06 46.0 4.3 33 198-230 27-59 (262)
356 3c5c_A RAS-like protein 12; GD 89.9 0.15 5.2E-06 44.5 2.7 24 207-230 21-44 (187)
357 1z0f_A RAB14, member RAS oncog 89.9 0.15 5.2E-06 43.5 2.7 24 207-230 15-38 (179)
358 1g16_A RAS-related protein SEC 89.9 0.15 5E-06 43.2 2.5 23 208-230 4-26 (170)
359 3fvq_A Fe(3+) IONS import ATP- 89.9 0.14 4.8E-06 50.1 2.6 25 207-231 30-54 (359)
360 4hlc_A DTMP kinase, thymidylat 89.8 0.22 7.6E-06 44.6 3.8 30 208-237 3-32 (205)
361 1svi_A GTP-binding protein YSX 89.8 0.15 5.3E-06 44.4 2.7 25 206-230 22-46 (195)
362 4edh_A DTMP kinase, thymidylat 89.7 0.21 7.1E-06 45.1 3.5 27 207-233 6-32 (213)
363 3tui_C Methionine import ATP-b 89.7 0.15 5.3E-06 49.9 2.8 25 207-231 54-78 (366)
364 3kkq_A RAS-related protein M-R 89.7 0.16 5.6E-06 43.8 2.7 24 207-230 18-41 (183)
365 2fn4_A P23, RAS-related protei 89.7 0.22 7.5E-06 42.6 3.5 25 206-230 8-32 (181)
366 1upt_A ARL1, ADP-ribosylation 89.7 0.17 5.7E-06 43.0 2.7 24 207-230 7-30 (171)
367 3bc1_A RAS-related protein RAB 89.6 0.16 5.6E-06 44.0 2.7 24 207-230 11-34 (195)
368 1m2o_B GTP-binding protein SAR 89.6 0.16 5.3E-06 44.6 2.5 23 208-230 24-46 (190)
369 4dsu_A GTPase KRAS, isoform 2B 89.6 0.17 5.7E-06 43.8 2.7 23 208-230 5-27 (189)
370 3d31_A Sulfate/molybdate ABC t 89.6 0.16 5.5E-06 49.6 2.8 25 207-231 26-50 (348)
371 2oil_A CATX-8, RAS-related pro 89.5 0.17 5.8E-06 44.2 2.7 24 207-230 25-48 (193)
372 1h65_A Chloroplast outer envel 89.5 0.27 9.4E-06 45.8 4.3 31 200-230 32-62 (270)
373 1z47_A CYSA, putative ABC-tran 89.5 0.16 5.6E-06 49.6 2.8 25 207-231 41-65 (355)
374 1mh1_A RAC1; GTP-binding, GTPa 89.5 0.17 5.9E-06 43.6 2.7 23 208-230 6-28 (186)
375 2bbs_A Cystic fibrosis transme 89.5 0.13 4.6E-06 48.8 2.1 25 207-231 64-88 (290)
376 3bwd_D RAC-like GTP-binding pr 89.4 0.18 6.1E-06 43.4 2.7 23 208-230 9-31 (182)
377 2a9k_A RAS-related protein RAL 89.4 0.18 6.1E-06 43.5 2.7 24 207-230 18-41 (187)
378 4dzz_A Plasmid partitioning pr 89.4 0.3 1E-05 43.1 4.3 27 208-234 2-29 (206)
379 1oxx_K GLCV, glucose, ABC tran 89.4 0.15 5.1E-06 49.9 2.4 25 207-231 31-55 (353)
380 2bme_A RAB4A, RAS-related prot 89.3 0.17 5.8E-06 43.7 2.5 24 207-230 10-33 (186)
381 3pqc_A Probable GTP-binding pr 89.3 0.2 6.7E-06 43.6 3.0 25 206-230 22-46 (195)
382 2www_A Methylmalonic aciduria 89.3 0.21 7.2E-06 48.8 3.5 28 206-233 73-100 (349)
383 2cxx_A Probable GTP-binding pr 89.3 0.14 4.9E-06 44.3 2.1 22 209-230 3-24 (190)
384 3rlf_A Maltose/maltodextrin im 89.3 0.17 5.9E-06 49.9 2.8 25 207-231 29-53 (381)
385 2atv_A RERG, RAS-like estrogen 89.3 0.18 6.2E-06 44.2 2.7 24 207-230 28-51 (196)
386 3tw8_B RAS-related protein RAB 89.2 0.19 6.4E-06 43.1 2.7 25 206-230 8-32 (181)
387 2efe_B Small GTP-binding prote 89.2 0.18 6.3E-06 43.2 2.7 24 207-230 12-35 (181)
388 3cbq_A GTP-binding protein REM 89.2 0.14 4.7E-06 45.2 1.9 23 206-228 22-44 (195)
389 2yyz_A Sugar ABC transporter, 89.2 0.18 6.1E-06 49.4 2.8 25 207-231 29-53 (359)
390 2cjw_A GTP-binding protein GEM 89.2 0.19 6.4E-06 44.2 2.7 23 207-229 6-28 (192)
391 2g6b_A RAS-related protein RAB 89.1 0.19 6.5E-06 43.1 2.7 24 207-230 10-33 (180)
392 3ld9_A DTMP kinase, thymidylat 89.1 0.26 8.8E-06 44.9 3.7 28 206-233 20-47 (223)
393 3t5g_A GTP-binding protein RHE 89.1 0.18 6.1E-06 43.4 2.5 24 207-230 6-29 (181)
394 1x6v_B Bifunctional 3'-phospho 89.1 0.24 8.3E-06 52.1 3.9 26 206-231 51-76 (630)
395 2it1_A 362AA long hypothetical 89.1 0.18 6.2E-06 49.4 2.8 25 207-231 29-53 (362)
396 2y8e_A RAB-protein 6, GH09086P 89.1 0.18 6.2E-06 43.0 2.5 23 208-230 15-37 (179)
397 3ea0_A ATPase, para family; al 89.1 0.35 1.2E-05 44.0 4.6 29 206-234 3-32 (245)
398 4gzl_A RAS-related C3 botulinu 89.1 0.21 7.2E-06 44.3 3.0 24 207-230 30-53 (204)
399 3dz8_A RAS-related protein RAB 89.0 0.19 6.5E-06 43.9 2.7 24 207-230 23-46 (191)
400 2bov_A RAla, RAS-related prote 89.0 0.19 6.6E-06 44.2 2.7 24 207-230 14-37 (206)
401 1g29_1 MALK, maltose transport 89.0 0.19 6.4E-06 49.6 2.8 25 207-231 29-53 (372)
402 2yv5_A YJEQ protein; hydrolase 89.0 0.28 9.5E-06 46.8 4.0 31 193-228 156-186 (302)
403 2b8t_A Thymidine kinase; deoxy 88.9 0.36 1.2E-05 43.9 4.4 28 207-234 12-39 (223)
404 1gwn_A RHO-related GTP-binding 88.8 0.19 6.5E-06 44.8 2.5 24 207-230 28-51 (205)
405 3v9p_A DTMP kinase, thymidylat 88.8 0.21 7.3E-06 45.5 2.9 27 207-233 25-51 (227)
406 1v43_A Sugar-binding transport 88.8 0.19 6.6E-06 49.4 2.8 25 207-231 37-61 (372)
407 3oes_A GTPase rhebl1; small GT 88.8 0.19 6.5E-06 44.3 2.5 24 207-230 24-47 (201)
408 2fh5_B SR-beta, signal recogni 88.8 0.2 6.9E-06 44.6 2.7 24 207-230 7-30 (214)
409 1zd9_A ADP-ribosylation factor 88.8 0.21 7.1E-06 43.6 2.7 24 207-230 22-45 (188)
410 2ew1_A RAS-related protein RAB 88.8 0.19 6.6E-06 44.6 2.5 24 207-230 26-49 (201)
411 1vg8_A RAS-related protein RAB 88.8 0.25 8.6E-06 43.5 3.3 25 206-230 7-31 (207)
412 1f6b_A SAR1; gtpases, N-termin 88.8 0.16 5.5E-06 44.9 2.0 22 208-229 26-47 (198)
413 3reg_A RHO-like small GTPase; 88.7 0.21 7.1E-06 43.7 2.7 24 207-230 23-46 (194)
414 3k9g_A PF-32 protein; ssgcid, 88.7 0.37 1.3E-05 44.7 4.6 28 205-232 25-53 (267)
415 2fg5_A RAB-22B, RAS-related pr 88.7 0.2 6.7E-06 43.9 2.5 24 207-230 23-46 (192)
416 3tqf_A HPR(Ser) kinase; transf 88.6 0.25 8.6E-06 42.9 3.0 23 208-230 17-39 (181)
417 3tkl_A RAS-related protein RAB 88.6 0.22 7.4E-06 43.4 2.7 24 207-230 16-39 (196)
418 3kjh_A CO dehydrogenase/acetyl 88.6 0.37 1.3E-05 43.9 4.4 25 210-234 3-27 (254)
419 2gf9_A RAS-related protein RAB 88.6 0.22 7.5E-06 43.3 2.7 24 207-230 22-45 (189)
420 2a5j_A RAS-related protein RAB 88.6 0.22 7.5E-06 43.5 2.7 24 207-230 21-44 (191)
421 3clv_A RAB5 protein, putative; 88.5 0.32 1.1E-05 42.3 3.8 24 207-230 7-30 (208)
422 2p5s_A RAS and EF-hand domain 88.5 0.22 7.6E-06 43.8 2.7 25 206-230 27-51 (199)
423 3hdt_A Putative kinase; struct 88.5 0.25 8.5E-06 44.9 3.1 26 207-232 14-39 (223)
424 3bfv_A CAPA1, CAPB2, membrane 88.5 0.67 2.3E-05 43.4 6.2 51 191-241 64-117 (271)
425 1zbd_A Rabphilin-3A; G protein 88.5 0.2 6.8E-06 44.1 2.4 24 207-230 8-31 (203)
426 2gf0_A GTP-binding protein DI- 88.4 0.21 7.2E-06 43.6 2.5 24 207-230 8-31 (199)
427 1z06_A RAS-related protein RAB 88.4 0.23 7.8E-06 43.2 2.7 24 207-230 20-43 (189)
428 3lv8_A DTMP kinase, thymidylat 88.3 0.24 8.2E-06 45.5 2.9 27 207-233 27-53 (236)
429 1x3s_A RAS-related protein RAB 88.3 0.23 8E-06 43.1 2.7 24 207-230 15-38 (195)
430 3llu_A RAS-related GTP-binding 88.3 0.19 6.4E-06 44.2 2.1 24 207-230 20-43 (196)
431 1pui_A ENGB, probable GTP-bind 88.2 0.15 5.1E-06 45.2 1.4 24 206-229 25-48 (210)
432 3ch4_B Pmkase, phosphomevalona 88.1 0.32 1.1E-05 43.4 3.5 26 206-231 10-35 (202)
433 2q3h_A RAS homolog gene family 88.1 0.2 6.9E-06 44.0 2.2 24 207-230 20-43 (201)
434 3fkq_A NTRC-like two-domain pr 88.1 0.43 1.5E-05 46.9 4.8 30 205-234 141-171 (373)
435 1jwy_B Dynamin A GTPase domain 88.1 0.25 8.7E-06 47.0 3.1 26 205-230 22-47 (315)
436 1g3q_A MIND ATPase, cell divis 88.1 0.43 1.5E-05 43.2 4.5 27 208-234 3-30 (237)
437 1p9r_A General secretion pathw 88.1 0.66 2.3E-05 46.4 6.2 29 206-234 166-194 (418)
438 2qnr_A Septin-2, protein NEDD5 88.0 0.19 6.6E-06 47.9 2.2 21 209-229 20-40 (301)
439 2obl_A ESCN; ATPase, hydrolase 88.0 0.24 8.1E-06 48.4 2.8 27 207-233 71-97 (347)
440 3gd7_A Fusion complex of cysti 88.0 0.22 7.6E-06 49.3 2.6 34 207-242 47-80 (390)
441 3lxx_A GTPase IMAP family memb 87.9 0.28 9.7E-06 44.7 3.1 25 206-230 28-52 (239)
442 2g3y_A GTP-binding protein GEM 87.8 0.24 8.2E-06 44.5 2.6 23 207-229 37-59 (211)
443 3cio_A ETK, tyrosine-protein k 87.8 0.69 2.3E-05 44.0 5.9 31 204-234 101-132 (299)
444 2fu5_C RAS-related protein RAB 87.7 0.17 5.7E-06 43.7 1.4 24 207-230 8-31 (183)
445 2atx_A Small GTP binding prote 87.7 0.25 8.5E-06 43.1 2.5 24 207-230 18-41 (194)
446 2oze_A ORF delta'; para, walke 87.7 0.4 1.4E-05 45.3 4.1 39 192-233 22-63 (298)
447 2o52_A RAS-related protein RAB 87.7 0.21 7.1E-06 44.1 2.0 24 207-230 25-48 (200)
448 2bcg_Y Protein YP2, GTP-bindin 87.6 0.25 8.6E-06 43.6 2.5 24 207-230 8-31 (206)
449 1zj6_A ADP-ribosylation factor 87.6 0.23 7.8E-06 43.1 2.2 25 206-230 15-39 (187)
450 4dkx_A RAS-related protein RAB 87.6 0.27 9.1E-06 44.4 2.7 22 209-230 15-36 (216)
451 2gza_A Type IV secretion syste 87.6 0.2 6.8E-06 49.2 2.0 25 208-232 176-200 (361)
452 4bas_A ADP-ribosylation factor 87.6 0.29 1E-05 42.7 2.9 25 206-230 16-40 (199)
453 2fv8_A H6, RHO-related GTP-bin 87.6 0.25 8.7E-06 43.8 2.5 23 208-230 26-48 (207)
454 1ega_A Protein (GTP-binding pr 87.6 0.29 9.8E-06 46.7 3.0 24 207-230 8-31 (301)
455 2j0v_A RAC-like GTP-binding pr 87.6 0.25 8.7E-06 43.8 2.5 24 207-230 9-32 (212)
456 3cph_A RAS-related protein SEC 87.6 0.27 9.3E-06 43.5 2.7 24 207-230 20-43 (213)
457 2h17_A ADP-ribosylation factor 87.5 0.21 7.3E-06 43.1 1.9 24 207-230 21-44 (181)
458 1q57_A DNA primase/helicase; d 87.5 0.5 1.7E-05 48.5 5.1 38 205-242 240-278 (503)
459 4tmk_A Protein (thymidylate ki 87.5 0.29 9.9E-06 44.2 2.9 26 208-233 4-29 (213)
460 2qu8_A Putative nucleolar GTP- 87.5 0.28 9.5E-06 44.3 2.8 25 206-230 28-52 (228)
461 1moz_A ARL1, ADP-ribosylation 87.5 0.18 6.2E-06 43.4 1.5 24 206-229 17-40 (183)
462 2b6h_A ADP-ribosylation factor 87.5 0.23 8E-06 43.5 2.2 23 207-229 29-51 (192)
463 3q9l_A Septum site-determining 87.4 0.48 1.6E-05 43.5 4.5 27 208-234 3-30 (260)
464 2hup_A RAS-related protein RAB 87.4 0.26 9E-06 43.5 2.5 24 207-230 29-52 (201)
465 2npi_A Protein CLP1; CLP1-PCF1 87.4 0.22 7.4E-06 50.6 2.1 26 207-232 138-163 (460)
466 2gco_A H9, RHO-related GTP-bin 87.4 0.27 9.1E-06 43.4 2.5 24 207-230 25-48 (201)
467 1ksh_A ARF-like protein 2; sma 87.4 0.26 8.8E-06 42.6 2.4 25 206-230 17-41 (186)
468 4i1u_A Dephospho-COA kinase; s 87.3 0.31 1.1E-05 43.8 2.9 23 207-229 9-31 (210)
469 3q3j_B RHO-related GTP-binding 87.2 0.29 9.9E-06 43.8 2.7 24 207-230 27-50 (214)
470 2j1l_A RHO-related GTP-binding 87.2 0.26 8.9E-06 44.0 2.4 24 207-230 34-57 (214)
471 3k53_A Ferrous iron transport 87.2 0.3 1E-05 45.6 2.9 24 207-230 3-26 (271)
472 2il1_A RAB12; G-protein, GDP, 87.0 0.27 9.4E-06 42.9 2.4 23 207-229 26-48 (192)
473 2rcn_A Probable GTPase ENGC; Y 86.9 0.3 1E-05 47.7 2.8 23 208-230 216-238 (358)
474 1g5t_A COB(I)alamin adenosyltr 86.9 0.4 1.4E-05 42.5 3.3 23 208-230 29-51 (196)
475 1byi_A Dethiobiotin synthase; 86.8 0.36 1.2E-05 43.3 3.1 27 208-234 2-29 (224)
476 3ez2_A Plasmid partition prote 86.8 0.65 2.2E-05 46.0 5.3 28 205-232 106-134 (398)
477 1tf7_A KAIC; homohexamer, hexa 86.8 0.39 1.3E-05 49.6 3.8 22 206-227 38-59 (525)
478 3ug7_A Arsenical pump-driving 86.8 0.85 2.9E-05 44.4 6.0 30 205-234 24-53 (349)
479 3cwq_A Para family chromosome 86.7 0.56 1.9E-05 41.9 4.3 26 209-234 2-28 (209)
480 3tmk_A Thymidylate kinase; pho 86.6 0.36 1.2E-05 43.7 3.0 27 207-233 5-31 (216)
481 4dhe_A Probable GTP-binding pr 86.6 0.32 1.1E-05 43.5 2.7 25 206-230 28-52 (223)
482 2qag_B Septin-6, protein NEDD5 86.6 0.29 1E-05 49.0 2.6 22 209-230 44-65 (427)
483 3upu_A ATP-dependent DNA helic 86.5 0.58 2E-05 47.4 4.8 26 208-233 46-71 (459)
484 2x77_A ADP-ribosylation factor 86.5 0.4 1.4E-05 41.5 3.2 24 206-229 21-44 (189)
485 3ice_A Transcription terminati 86.5 0.43 1.5E-05 47.0 3.6 28 207-234 174-201 (422)
486 1f2t_A RAD50 ABC-ATPase; DNA d 86.3 0.41 1.4E-05 40.4 3.0 25 207-231 23-47 (149)
487 1dek_A Deoxynucleoside monopho 86.3 0.4 1.4E-05 44.1 3.2 23 208-230 2-24 (241)
488 1sky_E F1-ATPase, F1-ATP synth 86.2 0.4 1.4E-05 48.5 3.3 28 208-235 152-179 (473)
489 3io3_A DEHA2D07832P; chaperone 86.1 0.68 2.3E-05 45.1 4.9 28 205-232 16-43 (348)
490 2f7s_A C25KG, RAS-related prot 86.1 0.34 1.2E-05 43.1 2.6 24 207-230 25-48 (217)
491 2ph1_A Nucleotide-binding prot 86.1 0.61 2.1E-05 43.2 4.4 28 207-234 18-46 (262)
492 1yqt_A RNAse L inhibitor; ATP- 86.1 0.33 1.1E-05 50.3 2.8 24 207-230 312-335 (538)
493 3la6_A Tyrosine-protein kinase 86.0 1.1 3.7E-05 42.3 6.1 51 191-241 74-127 (286)
494 2pt7_A CAG-ALFA; ATPase, prote 86.0 0.21 7.2E-06 48.3 1.1 25 208-232 172-196 (330)
495 2dpy_A FLII, flagellum-specifi 86.0 0.35 1.2E-05 48.7 2.8 28 206-233 156-183 (438)
496 1t9h_A YLOQ, probable GTPase E 85.9 0.24 8.2E-06 47.4 1.5 22 208-229 174-195 (307)
497 3iqw_A Tail-anchored protein t 85.9 0.7 2.4E-05 44.7 4.9 29 206-234 15-43 (334)
498 1tf7_A KAIC; homohexamer, hexa 85.9 0.39 1.3E-05 49.6 3.2 39 195-233 269-307 (525)
499 1u0l_A Probable GTPase ENGC; p 85.9 0.49 1.7E-05 45.0 3.7 23 208-230 170-192 (301)
500 2h57_A ADP-ribosylation factor 85.9 0.27 9.2E-06 42.8 1.7 24 207-230 21-44 (190)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=5e-48 Score=341.95 Aligned_cols=173 Identities=44% Similarity=0.714 Sum_probs=143.6
Q ss_pred CCCCCCceeEEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccchhhH
Q 041795 5 SFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSKWCL 84 (471)
Q Consensus 5 ~~~~~~~~dvFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~ 84 (471)
|++..++|||||||+|+|+|++|++||+.+|+++||++|+|++++++|+.|.++|.+||++|+++|+|||+||++|+||+
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEeEEeecCCCcccccCCchHHHHHHHHhhh-HHHHHHHHHHHhhccccCCCCCCCchhhhHHH
Q 041795 85 HELVKILECKSTNGQIVVPVFYHVDPSDVRKQTGSFRDAFVKHKKQM-AEKVQKWRDALTEASNLSGWNSMTIRSEAELV 163 (471)
Q Consensus 85 ~El~~~~~~~~~~~~~viPif~~v~ps~vr~q~~~~~~~f~~~~~~~-~~~v~~w~~al~~~~~~~g~~~~~~~~e~~~i 163 (471)
+||++|++|.++.++.|+||||+|+|++||+|+|+||++|.+|+.+. .+++++||.||+++++++|+++. ..|+++|
T Consensus 82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i 159 (176)
T 3jrn_A 82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLV 159 (176)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHH
T ss_pred HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHH
Confidence 99999999998889999999999999999999999999999999874 45699999999999999999984 4599999
Q ss_pred HHHHHhhhhccccccc
Q 041795 164 DVIVKDILKKLENITV 179 (471)
Q Consensus 164 ~~i~~~v~~~l~~~~~ 179 (471)
++|+++|+++++.+++
T Consensus 160 ~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 160 DKIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHHTTCC----
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999876654
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=4.5e-48 Score=347.34 Aligned_cols=175 Identities=42% Similarity=0.755 Sum_probs=159.7
Q ss_pred CCCCCCCCCceeEEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccch
Q 041795 2 ASTSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSK 81 (471)
Q Consensus 2 ~~~~~~~~~~~dvFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~ 81 (471)
+||++++.++|||||||+|+|+|++|++||+.+|+++||++|+|++++++|+.|.++|.+||++|+++|+|||++|++|.
T Consensus 26 ~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~ 105 (204)
T 3ozi_A 26 NPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105 (204)
T ss_dssp --------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCH
T ss_pred CCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCc
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhc-CCCeEEeEEeecCCCcccccCCchHHHHHHHHhhhH-HHHHHHHHHHhhccccCCCCCCCchhh
Q 041795 82 WCLHELVKILECKST-NGQIVVPVFYHVDPSDVRKQTGSFRDAFVKHKKQMA-EKVQKWRDALTEASNLSGWNSMTIRSE 159 (471)
Q Consensus 82 wc~~El~~~~~~~~~-~~~~viPif~~v~ps~vr~q~~~~~~~f~~~~~~~~-~~v~~w~~al~~~~~~~g~~~~~~~~e 159 (471)
||++||++|++|.++ .++.||||||+|+|++||+|+|+||++|.+|+.++. +++++||.||+++++++|+++.++..+
T Consensus 106 WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e 185 (204)
T 3ozi_A 106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQ 185 (204)
T ss_dssp HHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCH
T ss_pred HHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCH
Confidence 999999999999864 578999999999999999999999999999998874 459999999999999999999998889
Q ss_pred hHHHHHHHHhhhhcccc
Q 041795 160 AELVDVIVKDILKKLEN 176 (471)
Q Consensus 160 ~~~i~~i~~~v~~~l~~ 176 (471)
++++++|+.+|+.+++.
T Consensus 186 ~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 186 GAIADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999988764
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5e-37 Score=325.00 Aligned_cols=251 Identities=15% Similarity=0.151 Sum_probs=196.3
Q ss_pred cccchhHHHHHHhhhcC-CCCceEEEEeccCcchhhhHHHHHHH----hhhccccceEeeehhhhh--------------
Q 041795 187 VGLNSRIEKIKSLLCIG-RPDFRIVGIWGMGGTGKTTLAGAIFN----LIYKEFEGNCFLGNVREE-------------- 247 (471)
Q Consensus 187 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~~-------------- 247 (471)
+||+.++++|.++|..+ ..+.++|+|+||||+||||||+++|+ .+..+|++++|++.....
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999754 44689999999999999999999997 588999999998643310
Q ss_pred ---------------------h--------hc-C---cccccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhhhhCcC
Q 041795 248 ---------------------S--------EK-G---VLDDVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILDKFGVH 294 (471)
Q Consensus 248 ---------------------~--------~~-~---VLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~ 294 (471)
. .+ . ||||||+.+++ .+.. .+||+||||||++.++..++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~- 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ- 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS-
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCC-
Confidence 0 00 0 99999998865 3321 279999999999999987752
Q ss_pred CCceEEeCCCCHHHHHHHHHhccccCCCCCchHHHHHHHH----------HHHHhhhhcCCCHHHHHHHHHH-hcCCCCC
Q 041795 295 DTNVYEVNGLRYHEALELFCNCAFKENHCPSGFLASSKRV----------LKVLGSFFHRKSKLDWEKALEN-ISRISDP 363 (471)
Q Consensus 295 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i----------l~~lg~~L~~~~~~~w~~~l~~-l~~~~~~ 363 (471)
...+|+|++|+.++|++||.+++|.... .+.+.+++.+| ++++|+.|+.++ .+|...+.. +......
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~ 361 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLV 361 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSS
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHH
Confidence 1467999999999999999999986543 35666666666 888888888774 334333332 3322456
Q ss_pred chHhHHHhhccCCChhHHHHHc-----------ccccccCCCCHHHHHHhhccc----C-----------ccchHHHHhh
Q 041795 364 DIYDVLKISYNDLSLEEKSIFL-----------DIACFFAGEEKDYVTRMLDPN----F-----------PHNGLNILIA 417 (471)
Q Consensus 364 ~i~~~l~~Sy~~L~~~~k~~fl-----------~ls~Fp~~~~~~~l~~lw~~~----~-----------~~~~l~~L~~ 417 (471)
.+..+|.+||+.||++.|.||+ |||+||+++... +.+|++. . ...++++|++
T Consensus 362 ~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~ 439 (549)
T 2a5y_B 362 GVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSK 439 (549)
T ss_dssp TTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTT
T ss_pred HHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999 999999998766 6778762 1 1238999999
Q ss_pred CCCeeecCC---CeEEecHHHHHHHHHHHHhhcc
Q 041795 418 KSLVTVSND---NKIQMHDLLQEMGREVVRQECI 448 (471)
Q Consensus 418 ~sLi~~~~~---~~~~mHdlv~~~a~~i~~~e~~ 448 (471)
+|||+.... .+|+||||||++|++++.+++.
T Consensus 440 rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 440 RGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp BSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred cCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 999997543 4699999999999998877664
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.4e-34 Score=327.82 Aligned_cols=255 Identities=21% Similarity=0.256 Sum_probs=205.4
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh---hhcccc-ceEeeehhhhhh---------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL---IYKEFE-GNCFLGNVREES--------- 248 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~-~~~~~~~~~~~~--------- 248 (471)
....||||++++++|.++|....+++++|+|+||||+||||||+++|++ ...+|. .++|+.......
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 5677999999999999999866677999999999999999999999987 355565 455765222000
Q ss_pred ---------------------------------h-c--CcccccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhhh-h
Q 041795 249 ---------------------------------E-K--GVLDDVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILDK-F 291 (471)
Q Consensus 249 ---------------------------------~-~--~VLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~ 291 (471)
. + -||||||+..+|+.+ ++||+||||||++.++.. .
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 0 0 099999998877654 579999999999998854 3
Q ss_pred CcCCCceEEeCC-CCHHHHHHHHHhccccCC-CCCchHHHHHHHH------HHHHhhhhcCCCHHHHHHHHHHhcCCCC-
Q 041795 292 GVHDTNVYEVNG-LRYHEALELFCNCAFKEN-HCPSGFLASSKRV------LKVLGSFFHRKSKLDWEKALENISRISD- 362 (471)
Q Consensus 292 ~~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~i------l~~lg~~L~~~~~~~w~~~l~~l~~~~~- 362 (471)
+. ...+++++ |+.+||++||...++... ...+...+|++++ ++.+|++|+.+. ..|..+++.+.....
T Consensus 275 ~~--~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 275 GP--KHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp SC--BCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCC
T ss_pred CC--ceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhh
Confidence 33 67899996 999999999999885433 2234455666666 899999998765 468888888754321
Q ss_pred ----------CchHhHHHhhccCCChhHHHHHcccccccCCC--CHHHHHHhhcc--cCccchHHHHhhCCCeeecCCCe
Q 041795 363 ----------PDIYDVLKISYNDLSLEEKSIFLDIACFFAGE--EKDYVTRMLDP--NFPHNGLNILIAKSLVTVSNDNK 428 (471)
Q Consensus 363 ----------~~i~~~l~~Sy~~L~~~~k~~fl~ls~Fp~~~--~~~~l~~lw~~--~~~~~~l~~L~~~sLi~~~~~~~ 428 (471)
..+..+|.+||+.|++++|.||++||+||+++ +.+.++.+|.+ ..+..+++.|+++|||+...++.
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~ 431 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGK 431 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSS
T ss_pred hcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCC
Confidence 24899999999999999999999999999985 77899999987 66788999999999999876654
Q ss_pred ---EEecHHHHHHHHHHHHhh
Q 041795 429 ---IQMHDLLQEMGREVVRQE 446 (471)
Q Consensus 429 ---~~mHdlv~~~a~~i~~~e 446 (471)
|+||||||++|++.+.+|
T Consensus 432 ~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 432 SFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEEecHHHHHHHHhhhhHH
Confidence 999999999999997766
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=5.1e-33 Score=301.62 Aligned_cols=258 Identities=16% Similarity=0.091 Sum_probs=195.4
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh--hhccccc-eEeeehhh------------h--
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL--IYKEFEG-NCFLGNVR------------E-- 246 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~-~~~~~~~~------------~-- 246 (471)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++|++ +..+|+. ++|+.... .
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34599999999999999743 34899999999999999999999974 7888997 77865210 0
Q ss_pred --h-------------------------hh-----cC-----cccccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhh
Q 041795 247 --E-------------------------SE-----KG-----VLDDVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILD 289 (471)
Q Consensus 247 --~-------------------------~~-----~~-----VLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 289 (471)
. .. .+ ||||||+.++|+.+. +||+||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 0 00 01 999999999998762 6899999999999886
Q ss_pred hhCcCCCceEEeC------CCCHHHHHHHHHhccccCCCCCchHHHHHHHH---HHHHhhhhcCC--CHHHHHHHHHHhc
Q 041795 290 KFGVHDTNVYEVN------GLRYHEALELFCNCAFKENHCPSGFLASSKRV---LKVLGSFFHRK--SKLDWEKALENIS 358 (471)
Q Consensus 290 ~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i---l~~lg~~L~~~--~~~~w~~~l~~l~ 358 (471)
.+.. ...|+|+ +|+.+||++||++. ++.. ......+++..+ ++++|+.|+++ +..+|...
T Consensus 280 ~l~g--~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 280 FLSA--ATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp HHHH--HSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-TTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred hcCC--CeEEEecCccccCCcCHHHHHHHHHHH-cCCC-HHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence 5443 3467777 99999999999988 3332 111222222222 89999999887 68888653
Q ss_pred CCCCCchHhHHHhhccCCChhH-HHHHcccccccCCC--CHHHHHHhhccc---CccchHHHHhhCCCeeecC-CCeEEe
Q 041795 359 RISDPDIYDVLKISYNDLSLEE-KSIFLDIACFFAGE--EKDYVTRMLDPN---FPHNGLNILIAKSLVTVSN-DNKIQM 431 (471)
Q Consensus 359 ~~~~~~i~~~l~~Sy~~L~~~~-k~~fl~ls~Fp~~~--~~~~l~~lw~~~---~~~~~l~~L~~~sLi~~~~-~~~~~m 431 (471)
....+..+|++||+.||+++ |+||++||+||+++ +.+.++.+|++. .+..++++|+++|||+... .+.|+|
T Consensus 351 --~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrM 428 (1221)
T 1vt4_I 351 --NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428 (1221)
T ss_dssp --SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBC
T ss_pred --ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEe
Confidence 34679999999999999999 99999999999876 567899999873 4678999999999999863 467999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCcccccccchHHH
Q 041795 432 HDLLQEMGREVVRQECIKEPGKRSRLWYHEDVYH 465 (471)
Q Consensus 432 Hdlv~~~a~~i~~~e~~~~~~~~~rl~~~~d~~~ 465 (471)
|||+++++.. ..+.+..++|+.++-+...
T Consensus 429 HDLllELr~~-----~~e~~alHrRLvd~Y~~~~ 457 (1221)
T 1vt4_I 429 PSIYLELKVK-----LENEYALHRSIVDHYNIPK 457 (1221)
T ss_dssp CCHHHHHHHH-----HSCCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHhcC-----CCcHHHHHHHHHHHHHhhC
Confidence 9999885521 1234455556555544433
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=284.80 Aligned_cols=278 Identities=20% Similarity=0.240 Sum_probs=211.9
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh---hcccc-ceEeeehhhh--------h--
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI---YKEFE-GNCFLGNVRE--------E-- 247 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~f~-~~~~~~~~~~--------~-- 247 (471)
.+..||||+.++++|.++|....++.++|+|+||||+||||||.+++++. ..+|. .++|+..... .
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 56779999999999999998655568999999999999999999999864 67895 6888652110 0
Q ss_pred ----hh----------------------------c---CcccccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhhhhC
Q 041795 248 ----SE----------------------------K---GVLDDVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILDKFG 292 (471)
Q Consensus 248 ----~~----------------------------~---~VLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 292 (471)
.. + -||||||+..+++.+ ++|++||||||++.++..+.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC
Confidence 00 0 089999997766543 57899999999999876543
Q ss_pred cCCCceEEe---CCCCHHHHHHHHHhccccCC-CCCchHHHHHHHH------HHHHhhhhcCCCHHHHHHHHHHhcCCC-
Q 041795 293 VHDTNVYEV---NGLRYHEALELFCNCAFKEN-HCPSGFLASSKRV------LKVLGSFFHRKSKLDWEKALENISRIS- 361 (471)
Q Consensus 293 ~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~i------l~~lg~~L~~~~~~~w~~~l~~l~~~~- 361 (471)
...+++ ++|+.+|+++||...++... ..++...++++.+ ++.+|..|+.+. ..|...++.+....
T Consensus 275 ---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 275 ---GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQF 350 (591)
T ss_dssp ---SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCC
T ss_pred ---CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHH
Confidence 345666 48999999999999886422 2234556666666 888898887653 36888888875432
Q ss_pred ----------CCchHhHHHhhccCCChhHHHHHcccccccCCC--CHHHHHHhhcc--cCccchHHHHhhCCCeeecCCC
Q 041795 362 ----------DPDIYDVLKISYNDLSLEEKSIFLDIACFFAGE--EKDYVTRMLDP--NFPHNGLNILIAKSLVTVSNDN 427 (471)
Q Consensus 362 ----------~~~i~~~l~~Sy~~L~~~~k~~fl~ls~Fp~~~--~~~~l~~lw~~--~~~~~~l~~L~~~sLi~~~~~~ 427 (471)
...+..+|..||+.||++.|.||++||+||.+. +.+.+..+|.. ..+..+++.|+++|||+...++
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~ 430 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNG 430 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEET
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCC
Confidence 135889999999999999999999999999874 66889999987 4567899999999999975432
Q ss_pred ---eEEecHHHHHHHHHHHHhh-------------------ccCCCCCcccccccchHHHHhhcC
Q 041795 428 ---KIQMHDLLQEMGREVVRQE-------------------CIKEPGKRSRLWYHEDVYHVLKKN 470 (471)
Q Consensus 428 ---~~~mHdlv~~~a~~i~~~e-------------------~~~~~~~~~rl~~~~d~~~~l~~~ 470 (471)
.|.||+|+|+++++....+ ....++....+|+...+.|++.-+
T Consensus 431 ~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~ 495 (591)
T 1z6t_A 431 KSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAK 495 (591)
T ss_dssp TEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred CccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcC
Confidence 5999999999998872211 122344566677777888876543
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=1.4e-31 Score=235.32 Aligned_cols=119 Identities=19% Similarity=0.367 Sum_probs=111.1
Q ss_pred CCCCceeEEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccchhhHHH
Q 041795 7 SSSSKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSKWCLHE 86 (471)
Q Consensus 7 ~~~~~~dvFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~E 86 (471)
++.++|||||||+++| +..|+.+|+.+|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 3568999999999999 557999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCeEEeEEeecCCCcccccCCchHHHHHH
Q 041795 87 LVKILECKSTNGQIVVPVFYHVDPSDVRKQTGSFRDAFVK 126 (471)
Q Consensus 87 l~~~~~~~~~~~~~viPif~~v~ps~vr~q~~~~~~~f~~ 126 (471)
|..++++...++..|+||||+|+|++||+|.|.|+++|..
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 9999998877778999999999999999999999987754
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.93 E-value=4.1e-27 Score=204.03 Aligned_cols=138 Identities=17% Similarity=0.230 Sum_probs=93.1
Q ss_pred CCCCCCCCceeEEEcccccccCcchHHHHHHHHHh--CCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccc
Q 041795 3 STSFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCR--KKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASS 80 (471)
Q Consensus 3 ~~~~~~~~~~dvFiS~~~~D~~~~f~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S 80 (471)
|+|....+.|||||||+++| ..|+.+|+.+|++ .|+++|++++++.||+++.++|.++|++|+++|+|+|++|++|
T Consensus 2 ~~~~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S 79 (146)
T 3ub2_A 2 PGSSRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD 79 (146)
T ss_dssp --CCTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred CCCCCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence 44566778999999999999 4579999999998 5999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhcCCCeEEeEEeecCCCcc----cccCCchHHHHHHHHhhhHHHHHHHHHHH
Q 041795 81 KWCLHELVKILECKSTNGQIVVPVFYHVDPSDV----RKQTGSFRDAFVKHKKQMAEKVQKWRDAL 142 (471)
Q Consensus 81 ~wc~~El~~~~~~~~~~~~~viPif~~v~ps~v----r~q~~~~~~~f~~~~~~~~~~v~~w~~al 142 (471)
.||..|+..|+.+......+||||||+|+++++ +.....-.......-.+..+.|.+|+++|
T Consensus 80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 999999999999874344478899999986554 43332111111111223445588887764
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.88 E-value=1.4e-23 Score=184.83 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=93.9
Q ss_pred CCCCCCceeEEEcccccccCcchHHHHHHHHHhC--CcceeecCCCCCCCCCCcHHHHHHhh-hcceEEEEEccCcccch
Q 041795 5 SFSSSSKYDVSLSFRGGDTRDNFTSHLYAALCRK--KIKTFINGDEIRRGDDISPALFTAIQ-GSKISVIVLSKHYASSK 81 (471)
Q Consensus 5 ~~~~~~~~dvFiS~~~~D~~~~f~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~y~~S~ 81 (471)
.....+.|||||||+++| ..|+.+|+.+|+++ |+++|+|++++.||+++.++|.++|+ +|+++|+|+|++|++|.
T Consensus 10 ~~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~ 87 (160)
T 2js7_A 10 LGHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSK 87 (160)
T ss_dssp TSCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSH
T ss_pred CCCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCH
Confidence 344568899999999999 77999999999985 69999999999999999999999999 79999999999999999
Q ss_pred hhHHHHHHHHHhh-hcCCCeEEeEEeecCCC
Q 041795 82 WCLHELVKILECK-STNGQIVVPVFYHVDPS 111 (471)
Q Consensus 82 wc~~El~~~~~~~-~~~~~~viPif~~v~ps 111 (471)
||..|+..|+.+. .+.+.+||||||...+.
T Consensus 88 wc~~El~~a~~~~~~~~~~~vIpV~~~~~~~ 118 (160)
T 2js7_A 88 ECDFQTKFALSLSPGAHQKRLIPIKYKAMKK 118 (160)
T ss_dssp HHHHHHHHHHHHCTTHHHHTEEEEESSCCCC
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEEEcccch
Confidence 9999999999876 33456899999987643
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.86 E-value=3.7e-23 Score=184.95 Aligned_cols=103 Identities=18% Similarity=0.322 Sum_probs=88.6
Q ss_pred CCCCCceeEEEcccccccCcchHHH-HHHHHHh--CCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccchh
Q 041795 6 FSSSSKYDVSLSFRGGDTRDNFTSH-LYAALCR--KKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSKW 82 (471)
Q Consensus 6 ~~~~~~~dvFiS~~~~D~~~~f~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~w 82 (471)
....+.|||||||+++| .+|+.+ |+++|++ +|+++|+|++++.||+++.++|.++|++|+++|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 34667899999999999 579986 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hcCCCeEEeEEeecCC
Q 041795 83 CLHELVKILECK-STNGQIVVPVFYHVDP 110 (471)
Q Consensus 83 c~~El~~~~~~~-~~~~~~viPif~~v~p 110 (471)
|..|+..|+.+. .+.+.+||||||...|
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999998654 4456789999987544
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.86 E-value=1.9e-23 Score=182.04 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=90.3
Q ss_pred CCCceeEEEcccccccCcchHHH-HHHHHHhC--CcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccchhhH
Q 041795 8 SSSKYDVSLSFRGGDTRDNFTSH-LYAALCRK--KIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSKWCL 84 (471)
Q Consensus 8 ~~~~~dvFiS~~~~D~~~~f~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~ 84 (471)
.++.|||||||+++| ..|+.+ |+++|+++ |+++|+|++++.||+++.++|.++|++|+++|+|+||+|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 457899999999999 479997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCeEEeEEeecC
Q 041795 85 HELVKILECK-STNGQIVVPVFYHVD 109 (471)
Q Consensus 85 ~El~~~~~~~-~~~~~~viPif~~v~ 109 (471)
.|+..|+.+. .+++.+||||||...
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i 105 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPI 105 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 9999988543 455678999998643
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.85 E-value=3.6e-22 Score=175.60 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=89.9
Q ss_pred CceeEEEccccccc---------CcchHHHHHH-HHH-hCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcc
Q 041795 10 SKYDVSLSFRGGDT---------RDNFTSHLYA-ALC-RKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYA 78 (471)
Q Consensus 10 ~~~dvFiS~~~~D~---------~~~f~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~ 78 (471)
+.|||||||+++|+ +..|+.+|.. .|+ +.|+++|+|++|+.||+++.++|.++|++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 36999999999996 3568888665 699 799999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hcCCCeEEeEEeecCCC
Q 041795 79 -SSKWCLHELVKILECK-STNGQIVVPVFYHVDPS 111 (471)
Q Consensus 79 -~S~wc~~El~~~~~~~-~~~~~~viPif~~v~ps 111 (471)
.|.||..|+..|+.+. .+++..||||++...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999887 56678999999775543
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=4.9e-16 Score=172.43 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=92.1
Q ss_pred CCCceeEEEcccccccCcchH-HHHHHHHHh-----CCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccch
Q 041795 8 SSSKYDVSLSFRGGDTRDNFT-SHLYAALCR-----KKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSK 81 (471)
Q Consensus 8 ~~~~~dvFiS~~~~D~~~~f~-~~l~~~L~~-----~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~ 81 (471)
..+.|||||||+++| ..|| .+|...|+. .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|+.|.
T Consensus 667 ~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 467899999999999 4677 779999985 58999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhh-hcCCCeEEeEEeecCCC
Q 041795 82 WCLHELVKILECK-STNGQIVVPVFYHVDPS 111 (471)
Q Consensus 82 wc~~El~~~~~~~-~~~~~~viPif~~v~ps 111 (471)
||..|+..|+.+. ++++.+||||||+..|.
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 9999999998776 56678899999886654
No 14
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.19 E-value=2.6e-10 Score=112.45 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=135.8
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh----------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR---------------- 245 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~---------------- 245 (471)
.+..|+||+.++++|.+++..+ +++.|+|++|+|||||++++++... .+|+....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHHHHHHH
Confidence 4567999999999999988743 6899999999999999999987631 22221100
Q ss_pred -----------------------------------------hhhh---c--CcccccCCHh---------hHHHHhcCCC
Q 041795 246 -----------------------------------------EESE---K--GVLDDVNKIG---------QLQYLTCGLD 270 (471)
Q Consensus 246 -----------------------------------------~~~~---~--~VLDdv~~~~---------~~~~l~~~~~ 270 (471)
.... . -||||++... .+..|.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 0000 0 1789996532 2233322211
Q ss_pred CCCCCcEEEEEeCChhhhhhh----C----c--CCCceEEeCCCCHHHHHHHHHhccccCC-CCC-chHHHHHHHH----
Q 041795 271 RFGPGSRIIITTRDKWILDKF----G----V--HDTNVYEVNGLRYHEALELFCNCAFKEN-HCP-SGFLASSKRV---- 334 (471)
Q Consensus 271 ~~~~gs~IiiTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~-~~~~~l~~~i---- 334 (471)
. .++.++|+|++...+.... . . .....+++.+|+.+|+.+++....-... ... +....+....
T Consensus 161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 1 2478899999876542211 1 0 0124799999999999999876431111 122 2222222222
Q ss_pred --HHHHhhhhcC-CCHHHHHHHHHHhcCCCCCchHhHHHhhccCC---ChhHHHHHcccccccCCCCHHHHHHhhc----
Q 041795 335 --LKVLGSFFHR-KSKLDWEKALENISRISDPDIYDVLKISYNDL---SLEEKSIFLDIACFFAGEEKDYVTRMLD---- 404 (471)
Q Consensus 335 --l~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L---~~~~k~~fl~ls~Fp~~~~~~~l~~lw~---- 404 (471)
+..++..+.. .+...+ ...+. ..+...+.-.+..| ++..+.++..+|+ ...+...+.....
T Consensus 240 ~~l~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~ 310 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRA---MKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGT 310 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccHhHH---HHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhC
Confidence 3333322111 121111 11110 01111222222333 7888999999998 2345566665541
Q ss_pred -c--cCccchHHHHhhCCCeeecCCCeEEe-cHHHHHHH
Q 041795 405 -P--NFPHNGLNILIAKSLVTVSNDNKIQM-HDLLQEMG 439 (471)
Q Consensus 405 -~--~~~~~~l~~L~~~sLi~~~~~~~~~m-Hdlv~~~a 439 (471)
. .....+++.|.+.+||... ++.|.+ |++++++.
T Consensus 311 ~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 311 KIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 1 2235689999999999876 456665 67888765
No 15
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.17 E-value=3.4e-10 Score=111.93 Aligned_cols=240 Identities=17% Similarity=0.136 Sum_probs=137.4
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh----------------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR---------------- 245 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~---------------- 245 (471)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++++++..... .+|+....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHHHH
Confidence 45679999999999999 753 699999999999999999998875322 12222110
Q ss_pred --------------------------------------------hh----hh----c--CcccccCCHh-----hH-HHH
Q 041795 246 --------------------------------------------EE----SE----K--GVLDDVNKIG-----QL-QYL 265 (471)
Q Consensus 246 --------------------------------------------~~----~~----~--~VLDdv~~~~-----~~-~~l 265 (471)
.. .. . -||||++... .+ ..|
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 00 00 0 1789985422 22 222
Q ss_pred hcCCCCCCCCcEEEEEeCChhhhhhh----C----c--CCCceEEeCCCCHHHHHHHHHhccccCCCCCchHHHHHHHH-
Q 041795 266 TCGLDRFGPGSRIIITTRDKWILDKF----G----V--HDTNVYEVNGLRYHEALELFCNCAFKENHCPSGFLASSKRV- 334 (471)
Q Consensus 266 ~~~~~~~~~gs~IiiTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i- 334 (471)
...... .++.++|+|++........ . . .....+++++|+.+|+.+++....-......+....+....
T Consensus 162 ~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~ 240 (357)
T 2fna_A 162 AYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIG 240 (357)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHC
T ss_pred HHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhC
Confidence 111111 2467899999986543211 0 0 01257999999999999999874321111122234444333
Q ss_pred -----HHHHhhhhcC-CCHHHHHHH-HHHhcCCCCCchHhHHH-hhc--cCCChhHHHHHcccccccCCCCHHHHHHh--
Q 041795 335 -----LKVLGSFFHR-KSKLDWEKA-LENISRISDPDIYDVLK-ISY--NDLSLEEKSIFLDIACFFAGEEKDYVTRM-- 402 (471)
Q Consensus 335 -----l~~lg~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~Sy--~~L~~~~k~~fl~ls~Fp~~~~~~~l~~l-- 402 (471)
+..++..+.. .+...|... .+... ..+...+. +.+ ..|++..+.++..+|+- . +...+...
T Consensus 241 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g--~-~~~~l~~~~~ 313 (357)
T 2fna_A 241 GIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSKC--G-KWSDVKRALE 313 (357)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC--B-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHcC--C-CHHHHHHHHH
Confidence 4444443321 223233211 11100 00111121 111 16788999999999983 2 56666533
Q ss_pred --hc---c-cCccchHHHHhhCCCeeecCCCeEE-ecHHHHHHH
Q 041795 403 --LD---P-NFPHNGLNILIAKSLVTVSNDNKIQ-MHDLLQEMG 439 (471)
Q Consensus 403 --w~---~-~~~~~~l~~L~~~sLi~~~~~~~~~-mHdlv~~~a 439 (471)
.. . .....+++.|.+.+||.... +.|. -|++++++.
T Consensus 314 ~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 314 LEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 22 1 22356899999999998864 5566 578988763
No 16
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.14 E-value=1.2e-10 Score=117.74 Aligned_cols=233 Identities=15% Similarity=0.051 Sum_probs=128.3
Q ss_pred CCCCccccchhHHHHHHhh-hc--CC--CCceEEEE--eccCcchhhhHHHHHHHhhhccc-----c-ceEeeehhh---
Q 041795 182 NFDGLVGLNSRIEKIKSLL-CI--GR--PDFRIVGI--WGMGGTGKTTLAGAIFNLIYKEF-----E-GNCFLGNVR--- 245 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~f-----~-~~~~~~~~~--- 245 (471)
.+..|+||+.++++|.+.| .. .+ ...+.+.| +|++|+||||||+.+++.....+ . ..+|+....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3467999999999999988 42 12 23456666 99999999999999998865421 2 234443110
Q ss_pred ------h-------------------------hhh--c----CcccccCCH--------hhHHHHhcCCCCC---C--CC
Q 041795 246 ------E-------------------------ESE--K----GVLDDVNKI--------GQLQYLTCGLDRF---G--PG 275 (471)
Q Consensus 246 ------~-------------------------~~~--~----~VLDdv~~~--------~~~~~l~~~~~~~---~--~g 275 (471)
. ... . -||||++.. +.+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 0 000 0 189999653 3343333322111 2 44
Q ss_pred cEEEEEeCChhhhhhhC--------cCCCceEEeCCCCHHHHHHHHHhcc---ccCCCCCchHHHHHHHHHHHHh-----
Q 041795 276 SRIIITTRDKWILDKFG--------VHDTNVYEVNGLRYHEALELFCNCA---FKENHCPSGFLASSKRVLKVLG----- 339 (471)
Q Consensus 276 s~IiiTTR~~~v~~~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~l~~~il~~lg----- 339 (471)
..+|+||++..+...+. .. ...+++++|+.++++++|...+ +...... .+....+....+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~-~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQI-GFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTS
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhc-CCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccC
Confidence 55888887665332111 10 2239999999999999997543 3222222 233333434444
Q ss_pred -hhhcC-C------------------CHHHHHHHHHHhcCCCCCchHhHHHhhccCCChhHHHHHcccccccC----CCC
Q 041795 340 -SFFHR-K------------------SKLDWEKALENISRISDPDIYDVLKISYNDLSLEEKSIFLDIACFFA----GEE 395 (471)
Q Consensus 340 -~~L~~-~------------------~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~ls~Fp~----~~~ 395 (471)
+..+. . +...+...+..... ...+..++..||+..+.++..++.+.. .++
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 22110 0 11111111111000 234455678899999999999997642 234
Q ss_pred HHHHHHhh--------cc-----cCccchHHHHhhCCCeeec
Q 041795 396 KDYVTRML--------DP-----NFPHNGLNILIAKSLVTVS 424 (471)
Q Consensus 396 ~~~l~~lw--------~~-----~~~~~~l~~L~~~sLi~~~ 424 (471)
...+...+ .. .....+++.|.+.+||...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 43332222 11 1124679999999999864
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.02 E-value=1.9e-09 Score=107.72 Aligned_cols=233 Identities=18% Similarity=0.138 Sum_probs=130.7
Q ss_pred CCCCccccchhHHHHHHhhhcC--CCCceEEEEeccCcchhhhHHHHHHHhhhcccc---ceEeeehhh-----------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIG--RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE---GNCFLGNVR----------- 245 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~----------- 245 (471)
.++.|+||+.+++.|.+++... ......+.|+|++|+||||||+.+++.....+. ..+|+....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 4477999999999999988742 344678999999999999999999998765432 233443110
Q ss_pred ----------------hhh-------h-cC-----cccccCCH------hhHHHHhcCCCC-CCCCcEEEEEeCChhhhh
Q 041795 246 ----------------EES-------E-KG-----VLDDVNKI------GQLQYLTCGLDR-FGPGSRIIITTRDKWILD 289 (471)
Q Consensus 246 ----------------~~~-------~-~~-----VLDdv~~~------~~~~~l~~~~~~-~~~gs~IiiTTR~~~v~~ 289 (471)
+.. . .+ |||+++.. ..+..+...+.. ...+..+|+||++.....
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 000 0 01 78988542 233344322211 134566788888764332
Q ss_pred hhCc-----CCCceEEeCCCCHHHHHHHHHhccc---cCCCCCchHHHHHHHHHHHHh---hhhc---------------
Q 041795 290 KFGV-----HDTNVYEVNGLRYHEALELFCNCAF---KENHCPSGFLASSKRVLKVLG---SFFH--------------- 343 (471)
Q Consensus 290 ~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~il~~lg---~~L~--------------- 343 (471)
.+.. .....+++++++.++..+++...+- ......++ ....+....+ +.++
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN---VIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHH---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 2211 0124799999999999999987542 22222222 2222222221 1110
Q ss_pred -C---CCHHHHHHHHHHhcCCCCCchHhHHHhhccCCChhHHHHHcccccccC-C---CCHHHH-------HHhhcc---
Q 041795 344 -R---KSKLDWEKALENISRISDPDIYDVLKISYNDLSLEEKSIFLDIACFFA-G---EEKDYV-------TRMLDP--- 405 (471)
Q Consensus 344 -~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~ls~Fp~-~---~~~~~l-------~~lw~~--- 405 (471)
+ -+......++... ....+..++..|+..++..+..++.+.+ + +....+ ......
T Consensus 255 ~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~ 327 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAV 327 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCC
Confidence 0 0223333333222 1235666778899988888888875432 2 223222 221111
Q ss_pred --cCccchHHHHhhCCCeeec
Q 041795 406 --NFPHNGLNILIAKSLVTVS 424 (471)
Q Consensus 406 --~~~~~~l~~L~~~sLi~~~ 424 (471)
.....+++.|.+.++|...
T Consensus 328 ~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 328 TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEE
Confidence 1134578999999999864
No 18
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.94 E-value=2.3e-08 Score=100.05 Aligned_cols=230 Identities=13% Similarity=-0.001 Sum_probs=133.2
Q ss_pred CCccccchhHHHHHHhhhc--CCCCceEEEEeccCcchhhhHHHHHHHhhhcc--------ccceEeeehhhhh------
Q 041795 184 DGLVGLNSRIEKIKSLLCI--GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--------FEGNCFLGNVREE------ 247 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~------ 247 (471)
+.++||+.+++++.++|.. .....+.+.|+|++|+|||+||+.+++..... ....+++......
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999988763 33446789999999999999999999886443 1223444311100
Q ss_pred --------------------hh-----------cC---cccccCCHh------h-HHHHhcCCCCCCCCcEEEEEeCChh
Q 041795 248 --------------------SE-----------KG---VLDDVNKIG------Q-LQYLTCGLDRFGPGSRIIITTRDKW 286 (471)
Q Consensus 248 --------------------~~-----------~~---VLDdv~~~~------~-~~~l~~~~~~~~~gs~IiiTTR~~~ 286 (471)
.. .+ ||||++... . +..|.... .+..+|+||+...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCc
Confidence 00 01 789986532 2 33343332 6788999998753
Q ss_pred hhhhhC----cCCCceEEeCCCCHHHHHHHHHhcc---ccCCCCCc-hHHHHHHHH-------------HHHHhhhhcC-
Q 041795 287 ILDKFG----VHDTNVYEVNGLRYHEALELFCNCA---FKENHCPS-GFLASSKRV-------------LKVLGSFFHR- 344 (471)
Q Consensus 287 v~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~-~~~~l~~~i-------------l~~lg~~L~~- 344 (471)
....+. ..-...+++++++.++..++|...+ +.....++ .+..++... +...+..-.+
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 211110 0002389999999999999999874 32222222 222222211 1111111111
Q ss_pred --CCHHHHHHHHHHhcCCCCCchHhHHHhhccCCChhHHHHHcccccccC-C-C--CHHHHHHhhcc-----cCccchHH
Q 041795 345 --KSKLDWEKALENISRISDPDIYDVLKISYNDLSLEEKSIFLDIACFFA-G-E--EKDYVTRMLDP-----NFPHNGLN 413 (471)
Q Consensus 345 --~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~ls~Fp~-~-~--~~~~l~~lw~~-----~~~~~~l~ 413 (471)
-+.+.+..++.... ...+..++..|++.++..+..++.... + . ....+..-... .....+++
T Consensus 256 ~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 328 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIIS 328 (384)
T ss_dssp SCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 13455555554431 245667778999988888887776111 1 0 01112221111 12346789
Q ss_pred HHhhCCCeeec
Q 041795 414 ILIAKSLVTVS 424 (471)
Q Consensus 414 ~L~~~sLi~~~ 424 (471)
.|.++|||+..
T Consensus 329 ~L~~~gli~~~ 339 (384)
T 2qby_B 329 ELDMFGIVKIR 339 (384)
T ss_dssp HHHHTTSEEEE
T ss_pred HHHhCCCEEEE
Confidence 99999999864
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.94 E-value=4.8e-09 Score=104.81 Aligned_cols=236 Identities=15% Similarity=0.102 Sum_probs=130.9
Q ss_pred CCCCccccchhHHHHHHhhhcC--CCCceEEEEeccCcchhhhHHHHHHHhhhccc-----c-ceEeeehh---------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIG--RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF-----E-GNCFLGNV--------- 244 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~-~~~~~~~~--------- 244 (471)
.++.++||+.+++++..+|... ....+.+.|+|++|+||||||+.+++.....+ . ..+++...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 3467999999999999988532 34567899999999999999999998864321 1 12333311
Q ss_pred ------------------hhhhh--------cC-----cccccCCHh----h---HHHHhcCCCCC--CCCcEEEEEeCC
Q 041795 245 ------------------REESE--------KG-----VLDDVNKIG----Q---LQYLTCGLDRF--GPGSRIIITTRD 284 (471)
Q Consensus 245 ------------------~~~~~--------~~-----VLDdv~~~~----~---~~~l~~~~~~~--~~gs~IiiTTR~ 284 (471)
.+... .+ +||+++... . +..+....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 00000 01 789997532 1 22233222111 345678888876
Q ss_pred hhhhhhh-----CcCCCceEEeCCCCHHHHHHHHHhcc---ccCCCCC-chHHHHHHHH-------------HHHHhhhh
Q 041795 285 KWILDKF-----GVHDTNVYEVNGLRYHEALELFCNCA---FKENHCP-SGFLASSKRV-------------LKVLGSFF 342 (471)
Q Consensus 285 ~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~-~~~~~l~~~i-------------l~~lg~~L 342 (471)
......+ .......+.+++++.++...++...+ +...... +....++... +..++...
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 5321111 11012478999999999999998764 2222222 2222222211 11111110
Q ss_pred --cC---CCHHHHHHHHHHhcCCCCCchHhHHHhhccCCChhHHHHHcccccccCC---CCHHHHHHhhcc---------
Q 041795 343 --HR---KSKLDWEKALENISRISDPDIYDVLKISYNDLSLEEKSIFLDIACFFAG---EEKDYVTRMLDP--------- 405 (471)
Q Consensus 343 --~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~ls~Fp~~---~~~~~l~~lw~~--------- 405 (471)
.+ -+.+.+..++.... ...+..++..|+..++..++.++....+ .....+.+....
T Consensus 257 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (387)
T 2v1u_A 257 ERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEH 329 (387)
T ss_dssp HHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCC
T ss_pred HHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 01 13444444444331 2345667789999998888877744333 223333332211
Q ss_pred ---cCccchHHHHhhCCCeeec
Q 041795 406 ---NFPHNGLNILIAKSLVTVS 424 (471)
Q Consensus 406 ---~~~~~~l~~L~~~sLi~~~ 424 (471)
.....+++.|...|+++..
T Consensus 330 ~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 330 VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCeEEE
Confidence 1234578889999999874
No 20
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.82 E-value=2e-08 Score=92.97 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=89.6
Q ss_pred CCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcccc---------------------ceEee
Q 041795 183 FDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE---------------------GNCFL 241 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~~~~ 241 (471)
...++||+..++.|..++..+. ....+.|+|.+|+||||||+.+++.....+. ....+
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 3569999999999999987433 2358899999999999999999987643221 11111
Q ss_pred ehh--------hhhhhc------------CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChhhhh-h-hCcCCCc
Q 041795 242 GNV--------REESEK------------GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKWILD-K-FGVHDTN 297 (471)
Q Consensus 242 ~~~--------~~~~~~------------~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~-~~~~~~~ 297 (471)
... ...... -|+||++. ...++.|...+.....+..+|+||+...... . ... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r--~~ 178 (250)
T 1njg_A 101 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CL 178 (250)
T ss_dssp ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SE
T ss_pred cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH--hh
Confidence 110 011000 18899964 4556666655554456788999987654221 1 111 45
Q ss_pred eEEeCCCCHHHHHHHHHhcccc
Q 041795 298 VYEVNGLRYHEALELFCNCAFK 319 (471)
Q Consensus 298 ~~~l~~L~~~ea~~Lf~~~a~~ 319 (471)
.+++++++.++..+++...+..
T Consensus 179 ~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 179 QFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp EEECCCCCHHHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999877643
No 21
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.80 E-value=2.4e-08 Score=99.95 Aligned_cols=261 Identities=16% Similarity=0.114 Sum_probs=143.9
Q ss_pred CCCccccchhHHHHHHhhhc----CCCCceEEEEeccCcchhhhHHHHHHHhhhccc-cceEeeehhhhh----------
Q 041795 183 FDGLVGLNSRIEKIKSLLCI----GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF-EGNCFLGNVREE---------- 247 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~---------- 247 (471)
++.++||+.+++++.+++.. .....+.+.|+|.+|+|||||++.+++...... -..+++......
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 36799999999999998864 222234899999999999999999998865432 223333311000
Q ss_pred -----------------h--------h-c----CcccccCC--HhhHHHHhcCCCCCC----CCcEEEEEeCChhhhhhh
Q 041795 248 -----------------S--------E-K----GVLDDVNK--IGQLQYLTCGLDRFG----PGSRIIITTRDKWILDKF 291 (471)
Q Consensus 248 -----------------~--------~-~----~VLDdv~~--~~~~~~l~~~~~~~~----~gs~IiiTTR~~~v~~~~ 291 (471)
. . . -+||+++. ...+..|...+.... .+..||+||++.......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 0 0 0 17899864 444555554443222 367788888876433222
Q ss_pred Cc-----CCCceEEeCCCCHHHHHHHHHhcccc---CCCCCchHHHHHHHHHHHHhhhhc----CCCHHHHHHHHHHhc-
Q 041795 292 GV-----HDTNVYEVNGLRYHEALELFCNCAFK---ENHCPSGFLASSKRVLKVLGSFFH----RKSKLDWEKALENIS- 358 (471)
Q Consensus 292 ~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~l~~~il~~lg~~L~----~~~~~~w~~~l~~l~- 358 (471)
.. .....+++++++.++..+++...+.. ..... .+....+....++.-. .-+......++....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 10 01236999999999999999876532 22222 2222333333310000 001111111111100
Q ss_pred -----C---CCCCchHhH--------HHhhccCCChhHHHHHccccccc---C--CCCHHHHHHhhcc------------
Q 041795 359 -----R---ISDPDIYDV--------LKISYNDLSLEEKSIFLDIACFF---A--GEEKDYVTRMLDP------------ 405 (471)
Q Consensus 359 -----~---~~~~~i~~~--------l~~Sy~~L~~~~k~~fl~ls~Fp---~--~~~~~~l~~lw~~------------ 405 (471)
. .....+..+ +.-.+..|+.+++.++..++.+. . ......+.+.+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 332 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVH 332 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCH
Confidence 0 000112221 23335678888888888787654 2 2344444443322
Q ss_pred cCccchHHHHhhCCCeeecCC-------Ce---E----EecHHHHHHHHHHHHhh
Q 041795 406 NFPHNGLNILIAKSLVTVSND-------NK---I----QMHDLLQEMGREVVRQE 446 (471)
Q Consensus 406 ~~~~~~l~~L~~~sLi~~~~~-------~~---~----~mHdlv~~~a~~i~~~e 446 (471)
.....+++.|.++++|..... ++ + ..|+++..+...+..+|
T Consensus 333 ~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 333 SQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 112357999999999997432 22 2 24577777777766655
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.72 E-value=1.9e-08 Score=91.99 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=86.6
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-ccce-Eeeehh------------hhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGN-CFLGNV------------REE 247 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~-~~~~~~------------~~~ 247 (471)
....++|++..++.+.+++.... .+.+.|+|.+|+|||+||+.+++.+... +... ..+... ...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHH
Confidence 34568999999999999987443 3348999999999999999999875333 2211 111110 011
Q ss_pred hh------c----CcccccCCH--hhHHHHhcCCCCCCCCcEEEEEeCChhhh-hh-hCcCCCceEEeCCCCHHHHHHHH
Q 041795 248 SE------K----GVLDDVNKI--GQLQYLTCGLDRFGPGSRIIITTRDKWIL-DK-FGVHDTNVYEVNGLRYHEALELF 313 (471)
Q Consensus 248 ~~------~----~VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~~~~l~~L~~~ea~~Lf 313 (471)
.. . -++||++.. ...+.|...+.....++++|+||+..... .. ... ...+++++++.++...++
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r--~~~i~~~~~~~~~~~~~l 170 (226)
T 2chg_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR--CAVFRFKPVPKEAMKKRL 170 (226)
T ss_dssp HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHH
T ss_pred hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh--CceeecCCCCHHHHHHHH
Confidence 00 1 188999743 34455554444445678899998765321 11 111 347999999999999998
Q ss_pred Hhccc
Q 041795 314 CNCAF 318 (471)
Q Consensus 314 ~~~a~ 318 (471)
...+.
T Consensus 171 ~~~~~ 175 (226)
T 2chg_A 171 LEICE 175 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 23
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=4.1e-07 Score=88.57 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=87.1
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc-c-ceEeeeh--------h----hhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF-E-GNCFLGN--------V----REE 247 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~-~~~~~~~--------~----~~~ 247 (471)
...+++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+.... . ....+.. + .+.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEF 100 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHH
Confidence 44679999999999999887543 33489999999999999999998854321 1 1111211 0 111
Q ss_pred hh------c----CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChhhh-hhhCcCCCceEEeCCCCHHHHHHHHH
Q 041795 248 SE------K----GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKWIL-DKFGVHDTNVYEVNGLRYHEALELFC 314 (471)
Q Consensus 248 ~~------~----~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~~~~~~~~~~l~~L~~~ea~~Lf~ 314 (471)
.. . -++|+++. ....+.|...+.....++++|+||....-. ..+.. ....+++++++.++...++.
T Consensus 101 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s-r~~~~~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 101 ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS-RCAIFRFRPLRDEDIAKRLR 179 (327)
T ss_dssp HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-TEEEEECCCCCHHHHHHHHH
T ss_pred HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh-hCcEEEecCCCHHHHHHHHH
Confidence 00 1 18899974 345555655544445678899888765321 11100 03478999999999999888
Q ss_pred hccc
Q 041795 315 NCAF 318 (471)
Q Consensus 315 ~~a~ 318 (471)
..+.
T Consensus 180 ~~~~ 183 (327)
T 1iqp_A 180 YIAE 183 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 24
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=6.2e-07 Score=87.13 Aligned_cols=133 Identities=18% Similarity=0.262 Sum_probs=86.2
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-cc-ceEeee--------hhh----hh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FE-GNCFLG--------NVR----EE 247 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~-~~~~~~--------~~~----~~ 247 (471)
....++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+... +. ..+.+. .++ ..
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHF 96 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHH
Confidence 33569999999999999987543 2338999999999999999999885322 11 112221 111 11
Q ss_pred h-------h--c--CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChhh-hhhh-CcCCCceEEeCCCCHHHHHHH
Q 041795 248 S-------E--K--GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKWI-LDKF-GVHDTNVYEVNGLRYHEALEL 312 (471)
Q Consensus 248 ~-------~--~--~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~~~~~l~~L~~~ea~~L 312 (471)
. . . -|+||++. ....+.|...+.....++++|+||....- ...+ .. ...+++++++.++..++
T Consensus 97 ~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~ 174 (323)
T 1sxj_B 97 AQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ--CAILRYSKLSDEDVLKR 174 (323)
T ss_dssp HHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHH
T ss_pred HhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh--ceEEeecCCCHHHHHHH
Confidence 1 1 1 18999974 34445454444434467888888876432 1111 11 35799999999999999
Q ss_pred HHhccc
Q 041795 313 FCNCAF 318 (471)
Q Consensus 313 f~~~a~ 318 (471)
+...+.
T Consensus 175 l~~~~~ 180 (323)
T 1sxj_B 175 LLQIIK 180 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.29 E-value=1.4e-06 Score=83.42 Aligned_cols=135 Identities=24% Similarity=0.283 Sum_probs=82.3
Q ss_pred CCCCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE-------eeeh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC-------FLGN 243 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-------~~~~ 243 (471)
..++++|.+..+++|.+.+.. +....+.+.|+|.+|+|||+||+.+++.....|-... |+..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 94 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGE 94 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccch
Confidence 446789999999999887742 1234567999999999999999999987654432111 0100
Q ss_pred hhh----hhh----c----CcccccCCH----------------hhHHHHhcCCC--CCCCCcEEEEEeCChhhhh----
Q 041795 244 VRE----ESE----K----GVLDDVNKI----------------GQLQYLTCGLD--RFGPGSRIIITTRDKWILD---- 289 (471)
Q Consensus 244 ~~~----~~~----~----~VLDdv~~~----------------~~~~~l~~~~~--~~~~gs~IiiTTR~~~v~~---- 289 (471)
... ... . -+||+++.. ..+..++..+. ....+..||.||.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~ 174 (285)
T 3h4m_A 95 GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAIL 174 (285)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHc
Confidence 000 000 0 178988542 11222222221 1224677788887553322
Q ss_pred -hhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 290 -KFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 290 -~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
.... ...+.++.++.++-.+++...+.
T Consensus 175 ~~~Rf--~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 175 RPGRF--DRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp STTSE--EEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCcC--CeEEEECCCCHHHHHHHHHHHHh
Confidence 1112 34789999999999999987653
No 26
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.28 E-value=1.2e-06 Score=77.84 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=41.3
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
....++||+++++++.+.+.. ...+.+.|+|.+|+|||+||+.+++.+.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 446799999999999998864 2345688999999999999999998764
No 27
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.27 E-value=4.4e-06 Score=81.31 Aligned_cols=236 Identities=13% Similarity=0.109 Sum_probs=124.7
Q ss_pred CCCCccccchhHHHHHHhhhc---CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee--------hhhhhh--
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI---GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG--------NVREES-- 248 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~--------~~~~~~-- 248 (471)
..++++|++..++.+..++.. .......+.|+|.+|+|||+||+.+++.....|- ++. ......
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~---~~~~~~~~~~~~l~~~l~~ 86 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR---VTSGPAIEKPGDLAAILAN 86 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE---EECTTTCCSHHHHHHHHTT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE---EEeccccCChHHHHHHHHH
Confidence 446799999999999888752 1223467889999999999999999987644331 111 011110
Q ss_pred ---hcC--cccccCCH--hhHHHHhcCCCCC------------------CCCcEEEEEeCChhhh-hhhCcCCCceEEeC
Q 041795 249 ---EKG--VLDDVNKI--GQLQYLTCGLDRF------------------GPGSRIIITTRDKWIL-DKFGVHDTNVYEVN 302 (471)
Q Consensus 249 ---~~~--VLDdv~~~--~~~~~l~~~~~~~------------------~~gs~IiiTTR~~~v~-~~~~~~~~~~~~l~ 302 (471)
..+ +||+++.. ...+.|...+... .++.++|.||...... ..+...-...++++
T Consensus 87 ~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~ 166 (324)
T 1hqc_A 87 SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLE 166 (324)
T ss_dssp TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECC
T ss_pred hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecC
Confidence 112 88999753 2333333221110 0235566666543211 11110003579999
Q ss_pred CCCHHHHHHHHHhccccCC-CCCchHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhcCCC----C-----Cch---HhHH
Q 041795 303 GLRYHEALELFCNCAFKEN-HCPSGFLASSKRVLKVLGSFFHRKSKLDWEKALENISRIS----D-----PDI---YDVL 369 (471)
Q Consensus 303 ~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~il~~lg~~L~~~~~~~w~~~l~~l~~~~----~-----~~i---~~~l 369 (471)
+++.++...++...+.... ..++ +....++...+ -+......+++...... . ..+ ...+
T Consensus 167 ~~~~~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~-----G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 167 YYTPEELAQGVMRDARLLGVRITE---EAALEIGRRSR-----GTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCH---HHHHHHHHHSC-----SCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 9999999998887653322 1221 22222211111 12233333333321110 0 011 2223
Q ss_pred HhhccCCChhHHHHHccccccc--CCCCHHHHHHhhcc--cCccchHHH-HhhCCCeeecCCCe
Q 041795 370 KISYNDLSLEEKSIFLDIACFF--AGEEKDYVTRMLDP--NFPHNGLNI-LIAKSLVTVSNDNK 428 (471)
Q Consensus 370 ~~Sy~~L~~~~k~~fl~ls~Fp--~~~~~~~l~~lw~~--~~~~~~l~~-L~~~sLi~~~~~~~ 428 (471)
..++..|+..++..+..+.... .......+.+.+.. ......++. +++.++|+....|+
T Consensus 239 ~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 239 GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEE
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccc
Confidence 3445677887777777665432 23456776666543 111222333 88899998765443
No 28
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.16 E-value=5.5e-06 Score=80.19 Aligned_cols=133 Identities=16% Similarity=0.199 Sum_probs=86.9
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc-cccc-eEeee--------h----hhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK-EFEG-NCFLG--------N----VREE 247 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~-~~~~~--------~----~~~~ 247 (471)
...+++|++..++.+.+++..+ ..+.+.++|.+|+|||++|+.+++.+.. .+.. ...+. . +...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHH
Confidence 3356899999999999988743 2334899999999999999999987522 1110 11111 0 1111
Q ss_pred h----h--c----CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhh-CcCCCceEEeCCCCHHHHHHHH
Q 041795 248 S----E--K----GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKF-GVHDTNVYEVNGLRYHEALELF 313 (471)
Q Consensus 248 ~----~--~----~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~~~l~~L~~~ea~~Lf 313 (471)
. . . -++|+++. ....+.|...+.....++++|+||.... +...+ .. ...+++++++.++...++
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR--CAVFRFKPVPKEAMKKRL 170 (319)
T ss_dssp HHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT--CEEEECCCCCHHHHHHHH
T ss_pred HhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh--CeEEEecCCCHHHHHHHH
Confidence 1 0 1 18899864 3455667766666566788888886653 11111 11 357999999999999988
Q ss_pred Hhccc
Q 041795 314 CNCAF 318 (471)
Q Consensus 314 ~~~a~ 318 (471)
...+-
T Consensus 171 ~~~~~ 175 (319)
T 2chq_A 171 LEICE 175 (319)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 29
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.15 E-value=6.4e-06 Score=81.73 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=85.5
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcccc---------------------ceEe
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE---------------------GNCF 240 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~~~ 240 (471)
...+++|++..++.+...+..+. ....+.|+|.+|+||||+|+.+++.+..... ....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEE
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEE
Confidence 34569999999999999887433 2357889999999999999999887543211 0111
Q ss_pred ee--------hhhhhhhc------------CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChhh-hhhh-CcCCC
Q 041795 241 LG--------NVREESEK------------GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKWI-LDKF-GVHDT 296 (471)
Q Consensus 241 ~~--------~~~~~~~~------------~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~ 296 (471)
+. .+++.... -|+||++. ....+.|...+.....+..+|++|.+..- ...+ .. .
T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr--~ 170 (373)
T 1jr3_A 93 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--C 170 (373)
T ss_dssp EETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT--S
T ss_pred ecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh--e
Confidence 11 11111100 18899863 44555565554444556777877765432 1111 12 4
Q ss_pred ceEEeCCCCHHHHHHHHHhcc
Q 041795 297 NVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 297 ~~~~l~~L~~~ea~~Lf~~~a 317 (471)
..+++++++.++...++...+
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHH
Confidence 579999999999999887654
No 30
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.14 E-value=2.9e-06 Score=78.44 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=75.8
Q ss_pred CCCCccccc---hhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhhhh----------h
Q 041795 182 NFDGLVGLN---SRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVREE----------S 248 (471)
Q Consensus 182 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~----------~ 248 (471)
..++|+|.+ ..++.+..++... ..+.+.|+|.+|+||||||+.+++..........++....-. .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLE 103 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhcc
Confidence 345677743 4455555555432 457889999999999999999998865543334444321110 0
Q ss_pred hcC--cccccCCHh--h--HHHHhcCCCCC-CCCc-EEEEEeCChh---------hhhhhCcCCCceEEeCCCCHHHHHH
Q 041795 249 EKG--VLDDVNKIG--Q--LQYLTCGLDRF-GPGS-RIIITTRDKW---------ILDKFGVHDTNVYEVNGLRYHEALE 311 (471)
Q Consensus 249 ~~~--VLDdv~~~~--~--~~~l~~~~~~~-~~gs-~IiiTTR~~~---------v~~~~~~~~~~~~~l~~L~~~ea~~ 311 (471)
... ++||++... . .+.+...+... ..+. ++|+||+... +...+.. ...+++++++.++..+
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~--~~~i~l~~~~~~~~~~ 181 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW--GLTYQLQPMMDDEKLA 181 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHH--SEEEECCCCCGGGHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhc--CceEEeCCCCHHHHHH
Confidence 011 889986421 1 22232221110 1222 4777776322 1222211 2679999999999999
Q ss_pred HHHhccc
Q 041795 312 LFCNCAF 318 (471)
Q Consensus 312 Lf~~~a~ 318 (471)
++...+-
T Consensus 182 ~l~~~~~ 188 (242)
T 3bos_A 182 ALQRRAA 188 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.11 E-value=6e-06 Score=79.84 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=81.8
Q ss_pred CccccchhHHHHHHhhhc-------------CCCCceEEEEeccCcchhhhHHHHHHHhhhcccc----ceEeeehh---
Q 041795 185 GLVGLNSRIEKIKSLLCI-------------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE----GNCFLGNV--- 244 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~--- 244 (471)
.++|.+..++.|.+++.. .......+.|+|.+|+|||+||+.+++.+..... ..+.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 478999888888876541 1234557899999999999999999887543211 11111100
Q ss_pred -----------hhhh---hcC--cccccC-----------CHhhHHHHhcCCCCCCCCcEEEEEeCChh----------h
Q 041795 245 -----------REES---EKG--VLDDVN-----------KIGQLQYLTCGLDRFGPGSRIIITTRDKW----------I 287 (471)
Q Consensus 245 -----------~~~~---~~~--VLDdv~-----------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~----------v 287 (471)
.... ..+ +||+++ .......|...+.....+..+|.||.... +
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 0000 011 789987 33444555555444445677888886432 2
Q ss_pred hhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 288 LDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 288 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
...+ ...+++++++.++-..++...+-
T Consensus 192 ~~R~----~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 192 RSRI----AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHE----EEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHhC----CeEEEcCCcCHHHHHHHHHHHHH
Confidence 2222 36799999999999998877653
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.09 E-value=1.4e-05 Score=78.34 Aligned_cols=249 Identities=14% Similarity=0.162 Sum_probs=127.7
Q ss_pred CCCCccccchhHHHHHHhhhcC---CCCceEEEEeccCcchhhhHHHHHHHhhhccccceEe--eehhhhh---hh---c
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIG---RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF--LGNVREE---SE---K 250 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~--~~~~~~~---~~---~ 250 (471)
....++|++..++.+..++... ......+.|+|.+|+|||+||+.+++.....|-..-- +...... .. .
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSE 106 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccC
Confidence 3457999999999999888632 3345678999999999999999998876544321110 0011111 10 1
Q ss_pred -C--cccccCCH--hhHHHHhcCCCCC------------------CCCcEEEEEeCChhhh-hhhCcCCCceEEeCCCCH
Q 041795 251 -G--VLDDVNKI--GQLQYLTCGLDRF------------------GPGSRIIITTRDKWIL-DKFGVHDTNVYEVNGLRY 306 (471)
Q Consensus 251 -~--VLDdv~~~--~~~~~l~~~~~~~------------------~~gs~IiiTTR~~~v~-~~~~~~~~~~~~l~~L~~ 306 (471)
+ +||+++.. .....|...+... .++..+|.+|...... ..+...-...+++++++.
T Consensus 107 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 107 GDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD 186 (338)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred CCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCH
Confidence 1 78998742 3333333222111 1124566666543221 111000035799999999
Q ss_pred HHHHHHHHhccccCC-CCCchHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHh------cCCC---CCch---HhHHHhhc
Q 041795 307 HEALELFCNCAFKEN-HCPSGFLASSKRVLKVLGSFFHRKSKLDWEKALENI------SRIS---DPDI---YDVLKISY 373 (471)
Q Consensus 307 ~ea~~Lf~~~a~~~~-~~~~~~~~l~~~il~~lg~~L~~~~~~~w~~~l~~l------~~~~---~~~i---~~~l~~Sy 373 (471)
++...++...+-... ... .+....++... ..+..+-..+++.. .... ...+ ...+..+.
T Consensus 187 ~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~-----~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~ 258 (338)
T 3pfi_A 187 SELALILQKAALKLNKTCE---EKAALEIAKRS-----RSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNE 258 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEC---HHHHHHHHHTT-----TTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHH-----CcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCcc
Confidence 999998887653221 111 11111111111 11122222222221 0000 0111 22233445
Q ss_pred cCCChhHHHHHccccccc-CCCCHHHHHHhhcc--cCccchHH-HHhhCCCeeecCCCeEEecHHHHHH
Q 041795 374 NDLSLEEKSIFLDIACFF-AGEEKDYVTRMLDP--NFPHNGLN-ILIAKSLVTVSNDNKIQMHDLLQEM 438 (471)
Q Consensus 374 ~~L~~~~k~~fl~ls~Fp-~~~~~~~l~~lw~~--~~~~~~l~-~L~~~sLi~~~~~~~~~mHdlv~~~ 438 (471)
..++..++..+..++-.. .......+.+.+.. ......++ .|++.++|.....|+....--+.-+
T Consensus 259 ~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~~~~ 327 (338)
T 3pfi_A 259 LGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSAL 327 (338)
T ss_dssp TCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHHHHh
Confidence 556665566665555442 12356666665543 22233455 8999999998766665554444333
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.02 E-value=4.5e-05 Score=75.50 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=50.4
Q ss_pred hhHHHHHHHHhhhhcccccccccCCCCccccchhHHHHHHhhhc----------CCCCceEEEEeccCcchhhhHHHHHH
Q 041795 159 EAELVDVIVKDILKKLENITVSTNFDGLVGLNSRIEKIKSLLCI----------GRPDFRIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 159 e~~~i~~i~~~v~~~l~~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~ 228 (471)
+...++.+...+....+.. ..++++|.+..++.|.+.+.. .....+.+.|+|.+|+|||+||+.++
T Consensus 63 ~~~~~~~i~~~i~~~~~~~----~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPPV----NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CHHHHHHHHHHTBCCSCCC----CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCCCC----CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 4455555555554443222 345799999999999987742 12345689999999999999999999
Q ss_pred Hhhhc
Q 041795 229 NLIYK 233 (471)
Q Consensus 229 ~~~~~ 233 (471)
+....
T Consensus 139 ~~~~~ 143 (357)
T 3d8b_A 139 SQSGA 143 (357)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 87643
No 34
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.01 E-value=4.4e-06 Score=71.56 Aligned_cols=98 Identities=19% Similarity=0.081 Sum_probs=57.6
Q ss_pred CccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc-cccceEeeehh--hh---------hhhcC-
Q 041795 185 GLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK-EFEGNCFLGNV--RE---------ESEKG- 251 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~--~~---------~~~~~- 251 (471)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++.... ..... +... .. ....+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~a~~g~ 79 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELTPDNAPQLNDFIALAQGGT 79 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECCTTTSSCHHHHHHHHTTSC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCCCCcchhhhcHHHHcCCcE
Confidence 5789999999999887532223345789999999999999999886422 11111 2111 00 01112
Q ss_pred -cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCC
Q 041795 252 -VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRD 284 (471)
Q Consensus 252 -VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~ 284 (471)
+||+++. ......|...+.......++|.||..
T Consensus 80 l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 80 LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 8899974 23333444333323345678777764
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.89 E-value=8.1e-05 Score=70.55 Aligned_cols=132 Identities=22% Similarity=0.233 Sum_probs=73.0
Q ss_pred CCccccchhHHHHHH-------hhhc-CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE----ee--------eh
Q 041795 184 DGLVGLNSRIEKIKS-------LLCI-GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC----FL--------GN 243 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~----~~--------~~ 243 (471)
..++|....++.+.. .+.. .......+.|+|.+|+|||+||+.+++.....|-... ++ ..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~ 112 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQA 112 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHH
Confidence 457777777666655 2221 2345678999999999999999999987543321110 00 00
Q ss_pred hhhhhh------cC--cccccCCH------------hhHHHHhcCCC---CCCCCcEEEEEeCChhhhhhhCc-CC-Cce
Q 041795 244 VREESE------KG--VLDDVNKI------------GQLQYLTCGLD---RFGPGSRIIITTRDKWILDKFGV-HD-TNV 298 (471)
Q Consensus 244 ~~~~~~------~~--VLDdv~~~------------~~~~~l~~~~~---~~~~gs~IiiTTR~~~v~~~~~~-~~-~~~ 298 (471)
+..... .+ +||+++.. ..++.|...+. ..+....||.||.....+..... .. ...
T Consensus 113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~ 192 (272)
T 1d2n_A 113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTT 192 (272)
T ss_dssp HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEE
T ss_pred HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceE
Confidence 011000 01 78998542 12233333222 22334557778887755443111 00 356
Q ss_pred EEeCCCCH-HHHHHHHHh
Q 041795 299 YEVNGLRY-HEALELFCN 315 (471)
Q Consensus 299 ~~l~~L~~-~ea~~Lf~~ 315 (471)
+++++++. ++-..++..
T Consensus 193 i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 193 IHVPNIATGEQLLEALEL 210 (272)
T ss_dssp EECCCEEEHHHHHHHHHH
T ss_pred EcCCCccHHHHHHHHHHh
Confidence 88999988 555555544
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.88 E-value=7e-05 Score=72.97 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=79.7
Q ss_pred CCCCccccchhHHHHHHhhh----------cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE-------eeehh
Q 041795 182 NFDGLVGLNSRIEKIKSLLC----------IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC-------FLGNV 244 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-------~~~~~ 244 (471)
.-.+++|.+..++.|.+.+. ......+-+.|+|.+|+|||+||+.+++.....|-..- |+...
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~ 95 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 95 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchH
Confidence 44678999999999998772 11223467999999999999999999987654432111 00000
Q ss_pred ----hhhhh----c----CcccccCCHh-------------hHHHHhcCCC---CCCCCcEEEEEeCChhh-----hhhh
Q 041795 245 ----REESE----K----GVLDDVNKIG-------------QLQYLTCGLD---RFGPGSRIIITTRDKWI-----LDKF 291 (471)
Q Consensus 245 ----~~~~~----~----~VLDdv~~~~-------------~~~~l~~~~~---~~~~gs~IiiTTR~~~v-----~~~~ 291 (471)
+.... . -+||+++... ....++..+. ....+..||.||..... ...+
T Consensus 96 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf 175 (322)
T 3eie_A 96 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF 175 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHccc
Confidence 00000 0 1788886321 1222322221 22345666667765432 2222
Q ss_pred CcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 292 GVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 292 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
...+.++..+.++-.+++..++.
T Consensus 176 ----~~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 176 ----ERRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp ----CEEEECCCCCHHHHHHHHHHHHT
T ss_pred ----CeEEEeCCCCHHHHHHHHHHHhc
Confidence 45678899999999998887663
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.87 E-value=2.4e-05 Score=73.48 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=75.6
Q ss_pred CCCCccccchhHHHHHHhhhc----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE-------eeeh-
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC-------FLGN- 243 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-------~~~~- 243 (471)
..++++|.+..++.|.+++.. +....+.+.|+|.+|+|||+||+.+++.....|-..- |...
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChh
Confidence 345689999888888776531 1123467889999999999999999987644321100 0000
Q ss_pred ---hhhhh----h--c--CcccccCCH-----------------hhHHHHhcCCCC--CCCCcEEEEEeCChhhhhh-h-
Q 041795 244 ---VREES----E--K--GVLDDVNKI-----------------GQLQYLTCGLDR--FGPGSRIIITTRDKWILDK-F- 291 (471)
Q Consensus 244 ---~~~~~----~--~--~VLDdv~~~-----------------~~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~-~- 291 (471)
..... . . -+||+++.. ..+..++..+.. ...+..||.||........ .
T Consensus 84 ~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~ 163 (262)
T 2qz4_A 84 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALM 163 (262)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGG
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHh
Confidence 00000 0 0 178998643 112233322221 1235567777765442211 1
Q ss_pred ---CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 292 ---GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 292 ---~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.. ...+.++.++.++-.+++...+
T Consensus 164 ~~~R~--~~~i~i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 164 RPGRL--DRHVFIDLPTLQERREIFEQHL 190 (262)
T ss_dssp STTSC--CEEEECCSCCHHHHHHHHHHHH
T ss_pred cCCcC--CeEEEeCCcCHHHHHHHHHHHH
Confidence 11 3578899999999888887765
No 38
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=1.7e-05 Score=78.04 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=81.8
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc--ccce-Eeee--------h----hhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE--FEGN-CFLG--------N----VRE 246 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~-~~~~--------~----~~~ 246 (471)
....++|++..++.+...+..+. ...+.|+|.+|+||||+|+.+++.+... +... ..+. . ...
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKN 112 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHH
Confidence 44679999999999999987443 2238999999999999999998875421 1111 1111 0 111
Q ss_pred hhh-----------------c---CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCceEEeCC
Q 041795 247 ESE-----------------K---GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTNVYEVNG 303 (471)
Q Consensus 247 ~~~-----------------~---~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~ 303 (471)
... . -++|+++. ....+.|...+.......++|++|.... +...+.. ....+++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s-R~~~i~~~~ 191 (353)
T 1sxj_D 113 FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS-QCSKFRFKA 191 (353)
T ss_dssp HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH-HSEEEECCC
T ss_pred HhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc-cCceEEeCC
Confidence 110 0 17898863 3334444444333344667777775442 2111110 034689999
Q ss_pred CCHHHHHHHHHhccc
Q 041795 304 LRYHEALELFCNCAF 318 (471)
Q Consensus 304 L~~~ea~~Lf~~~a~ 318 (471)
++.++....+...+-
T Consensus 192 ~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 192 LDASNAIDRLRFISE 206 (353)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887653
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.78 E-value=9.3e-05 Score=73.19 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=77.1
Q ss_pred CCCCccccchhHHHHHHhhhc----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceE-------eeehh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC-------FLGNV 244 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-------~~~~~ 244 (471)
.-.+++|.+..++.|.+.+.. .....+-|.|+|.+|+|||+||+.+++.....|-..- |+...
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~ 128 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 128 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---C
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchH
Confidence 345689999999999887631 1122456889999999999999999997654332110 11100
Q ss_pred h----hhhh------c--CcccccCCHh-------------hHHHHhcCCC---CCCCCcEEEEEeCChh-----hhhhh
Q 041795 245 R----EESE------K--GVLDDVNKIG-------------QLQYLTCGLD---RFGPGSRIIITTRDKW-----ILDKF 291 (471)
Q Consensus 245 ~----~~~~------~--~VLDdv~~~~-------------~~~~l~~~~~---~~~~gs~IiiTTR~~~-----v~~~~ 291 (471)
. .... . -+||+++... ....|+..+. ....+..||.||.... +..
T Consensus 129 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-- 206 (355)
T 2qp9_X 129 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-- 206 (355)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--
T ss_pred HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--
Confidence 0 0000 0 1789886421 1223322221 1234566666776542 222
Q ss_pred CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 292 GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 292 ~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.. ...+.++..+.++-..++..+.
T Consensus 207 Rf--~~~i~i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 207 RF--ERRIYIPLPDLAARTTMFEINV 230 (355)
T ss_dssp TC--CEEEECCCCCHHHHHHHHHHHH
T ss_pred cc--CEEEEeCCcCHHHHHHHHHHHH
Confidence 22 4578899999998888887765
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.75 E-value=5.2e-05 Score=77.24 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=76.5
Q ss_pred CCcc-ccchhH--HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccc--eEeeehhh-------------
Q 041795 184 DGLV-GLNSRI--EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEG--NCFLGNVR------------- 245 (471)
Q Consensus 184 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~------------- 245 (471)
++|+ |..... ..+......... ...+.|+|.+|+||||||+.+++.+...+.. ..++....
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 183 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGK 183 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTC
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHccc
Confidence 4455 654433 233333332222 6789999999999999999999987655422 23333110
Q ss_pred -----hhhh-c---CcccccCCH----hhHHHHhcCCCC-CCCCcEEEEEeCCh---------hhhhhhCcCCCceEEeC
Q 041795 246 -----EESE-K---GVLDDVNKI----GQLQYLTCGLDR-FGPGSRIIITTRDK---------WILDKFGVHDTNVYEVN 302 (471)
Q Consensus 246 -----~~~~-~---~VLDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~ 302 (471)
.... . -+|||++.. ...+.+...+.. ...|..||+||.+. .+...+.. ..++.++
T Consensus 184 ~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~--g~~i~l~ 261 (440)
T 2z4s_A 184 LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM--GLVAKLE 261 (440)
T ss_dssp HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHS--SBCCBCC
T ss_pred HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccC--CeEEEeC
Confidence 0001 1 188998532 222233222211 13577899998763 22232322 3568999
Q ss_pred CCCHHHHHHHHHhccc
Q 041795 303 GLRYHEALELFCNCAF 318 (471)
Q Consensus 303 ~L~~~ea~~Lf~~~a~ 318 (471)
+++.++-..++.+.+-
T Consensus 262 ~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 262 PPDEETRKSIARKMLE 277 (440)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998887663
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.72 E-value=5.3e-05 Score=73.77 Aligned_cols=132 Identities=18% Similarity=0.152 Sum_probs=73.5
Q ss_pred CCcc-ccch--hHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehhh------hh-------
Q 041795 184 DGLV-GLNS--RIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNVR------EE------- 247 (471)
Q Consensus 184 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~------~~------- 247 (471)
++|+ |... ....+..++.........+.|+|.+|+||||||+.+++.....-...+++.... ..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 90 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTIN 90 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHH
Confidence 4565 5433 233444444433224567899999999999999999988643311223332110 00
Q ss_pred --h---h-cC--cccccCCHh----hHHHHhcCCCC-CCCCcEEEEEeCCh---------hhhhhhCcCCCceEEeCCCC
Q 041795 248 --S---E-KG--VLDDVNKIG----QLQYLTCGLDR-FGPGSRIIITTRDK---------WILDKFGVHDTNVYEVNGLR 305 (471)
Q Consensus 248 --~---~-~~--VLDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~~~l~~L~ 305 (471)
. . .. +|||+.... ..+.+...+.. ...|..||+||.+. .+...+.. ..++++++ +
T Consensus 91 ~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~--~~~i~l~~-~ 167 (324)
T 1l8q_A 91 EFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG--GILVEIEL-D 167 (324)
T ss_dssp HHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT--SEEEECCC-C
T ss_pred HHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC--ceEEEeCC-C
Confidence 0 0 11 889986432 12222222111 12466788887643 12222222 35689999 9
Q ss_pred HHHHHHHHHhccc
Q 041795 306 YHEALELFCNCAF 318 (471)
Q Consensus 306 ~~ea~~Lf~~~a~ 318 (471)
.++-..++...+.
T Consensus 168 ~~e~~~il~~~~~ 180 (324)
T 1l8q_A 168 NKTRFKIIKEKLK 180 (324)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887764
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.71 E-value=3.7e-05 Score=78.46 Aligned_cols=130 Identities=22% Similarity=0.327 Sum_probs=77.8
Q ss_pred CCCCccccchhH---HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEee----ehhhhhhh-----
Q 041795 182 NFDGLVGLNSRI---EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL----GNVREESE----- 249 (471)
Q Consensus 182 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~----~~~~~~~~----- 249 (471)
....++|.+..+ ..|...+..+ ....+.|+|.+|+||||||+.+++.....|-..--. ..++....
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~ 101 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQN 101 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 446789998888 6777777644 347899999999999999999999875554321111 11111100
Q ss_pred ----c---CcccccCCH--hhHHHHhcCCCCCCCCcEEE-EEeCChhh--h-hhhCcCCCceEEeCCCCHHHHHHHHHhc
Q 041795 250 ----K---GVLDDVNKI--GQLQYLTCGLDRFGPGSRII-ITTRDKWI--L-DKFGVHDTNVYEVNGLRYHEALELFCNC 316 (471)
Q Consensus 250 ----~---~VLDdv~~~--~~~~~l~~~~~~~~~gs~Ii-iTTR~~~v--~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 316 (471)
. -+||+++.. .+.+.|+..+.. + ...+| .||.+... . ..... ..++.+++++.++...++.+.
T Consensus 102 ~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR--~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 102 RNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSR--ARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp HHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTT--EEEEECCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCc--eeEEeeCCcCHHHHHHHHHHH
Confidence 0 188999642 334444444332 2 22333 35555421 1 11111 457899999999999988776
Q ss_pred c
Q 041795 317 A 317 (471)
Q Consensus 317 a 317 (471)
.
T Consensus 178 l 178 (447)
T 3pvs_A 178 M 178 (447)
T ss_dssp H
T ss_pred H
Confidence 5
No 43
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.71 E-value=0.00028 Score=68.00 Aligned_cols=130 Identities=20% Similarity=0.214 Sum_probs=78.3
Q ss_pred CCCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeehh-------
Q 041795 183 FDGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGNV------- 244 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~------- 244 (471)
-++++|.+..+++|.+.+.. +-...+.+.|+|.+|+|||+||+.+++.....|- .+...
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i---~v~~~~l~~~~~ 90 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI---SIKGPELLTMWF 90 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEE---EECHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEE---EEEhHHHHhhhc
Confidence 35689999988888877642 2234568999999999999999999987643321 11100
Q ss_pred -------hhhhh---c-----CcccccCCHh----------------hHHHHhcCCCC--CCCCcEEEEEeCChhhhhh-
Q 041795 245 -------REESE---K-----GVLDDVNKIG----------------QLQYLTCGLDR--FGPGSRIIITTRDKWILDK- 290 (471)
Q Consensus 245 -------~~~~~---~-----~VLDdv~~~~----------------~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~- 290 (471)
..... . -+||+++... ....|+..+.. ...+..||.||.....+..
T Consensus 91 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~a 170 (301)
T 3cf0_A 91 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPA 170 (301)
T ss_dssp TTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGG
T ss_pred CchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChH
Confidence 00000 0 1788886321 12233322211 1235677778866533221
Q ss_pred -h---CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 291 -F---GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 291 -~---~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
. .. ...+.++..+.++-.+++....
T Consensus 171 l~r~gRf--~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 171 ILRPGRL--DQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp GGSTTSS--CEEEECCCCCHHHHHHHHHHHH
T ss_pred HhcCCcc--ceEEecCCcCHHHHHHHHHHHH
Confidence 1 12 4578999999998888876654
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.69 E-value=0.00021 Score=72.82 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=79.7
Q ss_pred CCCCccccchhHHHHHHhhhc----------CCCCceEEEEeccCcchhhhHHHHHHHhh-hcccc---ce----Eeeeh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLI-YKEFE---GN----CFLGN 243 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~f~---~~----~~~~~ 243 (471)
.-++++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++.. ...|- +. .|+..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~ 211 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 211 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcch
Confidence 446789999999999886631 11235789999999999999999999876 32221 00 01110
Q ss_pred ----hhhhhh----c----CcccccCCH-------------hhHHHHhcCCCCC---CCCcEEEEEeCChhhhhh--h-C
Q 041795 244 ----VREESE----K----GVLDDVNKI-------------GQLQYLTCGLDRF---GPGSRIIITTRDKWILDK--F-G 292 (471)
Q Consensus 244 ----~~~~~~----~----~VLDdv~~~-------------~~~~~l~~~~~~~---~~gs~IiiTTR~~~v~~~--~-~ 292 (471)
++.... . -+||+++.. .....|+..+... ..+..||.||.....+.. . .
T Consensus 212 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR 291 (444)
T 2zan_A 212 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR 291 (444)
T ss_dssp CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhh
Confidence 011000 0 178988643 1234455544432 345667777765432211 0 1
Q ss_pred cCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 293 VHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 293 ~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
. ...+.++..+.++-..+|..+.
T Consensus 292 f--~~~i~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 292 F--EKRIYIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp C--CEEEECCCCCHHHHHHHHHHHH
T ss_pred c--ceEEEeCCcCHHHHHHHHHHHH
Confidence 2 3578888888888888887765
No 45
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.68 E-value=4.2e-05 Score=72.23 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=39.3
Q ss_pred CCCCccccchhHHHHHHhhhc----------CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++++|.+..++.+.+.+.. +....+-+.|+|.+|+|||+||+.+++....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 446799999999888876641 1122344789999999999999999987543
No 46
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.64 E-value=0.00027 Score=69.87 Aligned_cols=51 Identities=27% Similarity=0.259 Sum_probs=39.1
Q ss_pred CCCccccchhHHHHHH---hhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 183 FDGLVGLNSRIEKIKS---LLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~---~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.+.++|++..++.+.. .+..+....+.+.|+|.+|+|||+||+.+++.+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4679999988776544 44433333468999999999999999999988653
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.64 E-value=0.00027 Score=68.84 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCCCccccchhHHHHHHhhhc---------C-CCCceEEEEeccCcchhhhHHHHHHHhh-hccccce-------Eeeeh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI---------G-RPDFRIVGIWGMGGTGKTTLAGAIFNLI-YKEFEGN-------CFLGN 243 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~f~~~-------~~~~~ 243 (471)
.-++++|.+..++.|.+.+.. + ....+-+.|+|++|+|||+||+.+++.. ...|-.. -|+..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~ 89 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 89 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhH
Confidence 345688999888888876531 1 1234789999999999999999999876 3222110 01111
Q ss_pred h----hhhhh----c----CcccccCCH-------------hhHHHHhcCCC---CCCCCcEEEEEeCChh-----hhhh
Q 041795 244 V----REESE----K----GVLDDVNKI-------------GQLQYLTCGLD---RFGPGSRIIITTRDKW-----ILDK 290 (471)
Q Consensus 244 ~----~~~~~----~----~VLDdv~~~-------------~~~~~l~~~~~---~~~~gs~IiiTTR~~~-----v~~~ 290 (471)
. +.... . -+||+++.. .....++..+. ....+..||.||.... +..
T Consensus 90 ~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r- 168 (322)
T 1xwi_A 90 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR- 168 (322)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh-
Confidence 0 00000 0 178888643 11122222221 1234555666675442 222
Q ss_pred hCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 291 FGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 291 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.. ...+.++..+.++-..++..+.
T Consensus 169 -Rf--~~~i~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 169 -RF--EKRIYIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp -TC--CEEEECCCCCHHHHHHHHHHHH
T ss_pred -hc--CeEEEeCCcCHHHHHHHHHHHH
Confidence 22 4578899889888888887765
No 48
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.62 E-value=9.5e-05 Score=59.76 Aligned_cols=71 Identities=4% Similarity=0.008 Sum_probs=53.0
Q ss_pred CceeEEEcccccccCcchHHHHHHHHHhCCcceeecCCCCCCCCCCcHHHHHHhhhcceEEEEEccCcccchhhHHHHHH
Q 041795 10 SKYDVSLSFRGGDTRDNFTSHLYAALCRKKIKTFINGDEIRRGDDISPALFTAIQGSKISVIVLSKHYASSKWCLHELVK 89 (471)
Q Consensus 10 ~~~dvFiS~~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~ 89 (471)
..|.+||||+..| -.+.|...|.+.|+. |.| ..|+.|.++|++.++...+|+||..|+..
T Consensus 3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~-~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE----DYRVFLERLEQSGLE-WRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH----HHHHHHHHHHHHCSC-EEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh----HHHHHHHHHhCCCCe-eec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 4689999999998 255566666555654 233 66899999999999999999999999987
Q ss_pred HHHhhhcCCCeEEeE
Q 041795 90 ILECKSTNGQIVVPV 104 (471)
Q Consensus 90 ~~~~~~~~~~~viPi 104 (471)
+.+ .+..++-|
T Consensus 63 A~~----~gkpIigV 73 (111)
T 1eiw_A 63 ARK----SSKPIITV 73 (111)
T ss_dssp HTT----TTCCEEEE
T ss_pred HHH----cCCCEEEE
Confidence 754 34445543
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.61 E-value=5.8e-05 Score=73.46 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=77.5
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee-------hhhh----hhhc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG-------NVRE----ESEK 250 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~-------~~~~----~~~~ 250 (471)
..++++|.+..++.+.+++..+. ...++.+.|.+|+|||++|+.+++.+...| ..+. .+++ ....
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~~~~~~~~~i~~~~~~~~~~ 99 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVNGSDCKIDFVRGPLTNFASA 99 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEETTTCCHHHHHTHHHHHHHB
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEcccccCHHHHHHHHHHHHhh
Confidence 44679999999999999987432 346788889999999999999998864332 1111 1111 1110
Q ss_pred ---------CcccccCCHh---hHHHHhcCCCCCCCCcEEEEEeCChhhh-hhh-CcCCCceEEeCCCCHHHHH
Q 041795 251 ---------GVLDDVNKIG---QLQYLTCGLDRFGPGSRIIITTRDKWIL-DKF-GVHDTNVYEVNGLRYHEAL 310 (471)
Q Consensus 251 ---------~VLDdv~~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~~~~~~~~l~~L~~~ea~ 310 (471)
-++|+++... ..+.|...+.....+.++|+||....-. ..+ .. ...+++++++.++-.
T Consensus 100 ~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR--~~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 100 ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR--CRVITFGQPTDEDKI 171 (324)
T ss_dssp CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--SEEEECCCCCHHHHH
T ss_pred cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--CcEEEeCCCCHHHHH
Confidence 1899998543 4455544433333567888888764311 100 01 346899999988743
No 50
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=9e-05 Score=72.91 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=81.0
Q ss_pred CCCCccccchhHHHHHHhh-hcCCCCceEEEEeccCcchhhhHHHHHHHhhhcccc------------------------
Q 041795 182 NFDGLVGLNSRIEKIKSLL-CIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE------------------------ 236 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------------------------ 236 (471)
...+++|.+..++.+.+++ ..+. ... +.|+|..|+||||||+.++..+...-.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 3356899999999999888 4332 233 899999999999999999885321100
Q ss_pred --ceEeeeh----------hhhh----h--------------h-c---CcccccCC--HhhHHHHhcCCCCCCCCcEEEE
Q 041795 237 --GNCFLGN----------VREE----S--------------E-K---GVLDDVNK--IGQLQYLTCGLDRFGPGSRIII 280 (471)
Q Consensus 237 --~~~~~~~----------~~~~----~--------------~-~---~VLDdv~~--~~~~~~l~~~~~~~~~gs~Iii 280 (471)
....+.. +++. . . . -+||++.. ....+.|...+.....++.+|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il 169 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIM 169 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEE
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEE
Confidence 0111110 1110 0 0 1 17888864 3333444443333345678888
Q ss_pred EeCChh-hhhhh-CcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 281 TTRDKW-ILDKF-GVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 281 TTR~~~-v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
+|.+.. +...+ .. ...+++++++.++....+...+-
T Consensus 170 ~t~~~~~l~~~l~sR--~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 170 VCDSMSPIIAPIKSQ--CLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp EESCSCSSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhh--ceEEecCCcCHHHHHHHHHHHHH
Confidence 887642 22211 12 35799999999999998887653
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.57 E-value=0.00019 Score=71.86 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=41.3
Q ss_pred CCCCccccchhHHHHHHhhhc----------CCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+++|.+..++.|.+++.. .....+.+.|+|.+|+|||+||+.+++.....
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 446799999999999987731 01224689999999999999999998875443
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=0.0003 Score=73.17 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=77.7
Q ss_pred CCCCccccchhHHHHHHhhhcC---------------CCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeeh---
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIG---------------RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGN--- 243 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--- 243 (471)
....++|++..+++|.++|... .+..+.+.|+|++|+||||||+.+++.....| . .+..
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~--i-~in~s~~ 113 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI--L-EQNASDV 113 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE--E-EECTTSC
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE--E-EEeCCCc
Confidence 3457999999999999998631 01347899999999999999999998763211 1 1110
Q ss_pred ---------hh---------hh---h-------hc---CcccccCCH-----hhHHHHhcCCCCCCCCcEEEEEeCChh-
Q 041795 244 ---------VR---------EE---S-------EK---GVLDDVNKI-----GQLQYLTCGLDRFGPGSRIIITTRDKW- 286 (471)
Q Consensus 244 ---------~~---------~~---~-------~~---~VLDdv~~~-----~~~~~l~~~~~~~~~gs~IiiTTR~~~- 286 (471)
+. .. . .. -+||+++.. ..+..|...+.. .+..||+++.+..
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~ 191 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNL 191 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCC
Confidence 00 00 0 01 178998632 112333322221 2334666554422
Q ss_pred --hhhhhCcCCCceEEeCCCCHHHHHHHHHhccc
Q 041795 287 --ILDKFGVHDTNVYEVNGLRYHEALELFCNCAF 318 (471)
Q Consensus 287 --v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 318 (471)
+...... ...+++++++.++....+...+.
T Consensus 192 ~~l~~l~~r--~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 192 PKMRPFDRV--CLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp STTGGGTTT--SEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhhHhc--eEEEEeCCCCHHHHHHHHHHHHH
Confidence 2221122 45789999999999988877654
No 53
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.54 E-value=6.9e-05 Score=65.96 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=41.4
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
....++||+.+++.+.+.+.. ...+.+.|+|.+|+|||+||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345699999999999998864 23456789999999999999999987643
No 54
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.48 E-value=1.7e-05 Score=67.60 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=35.0
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999998887753222234578999999999999999987543
No 55
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.48 E-value=0.00022 Score=67.16 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=35.3
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999888876653222235678999999999999999998643
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.45 E-value=0.00048 Score=70.94 Aligned_cols=132 Identities=18% Similarity=0.139 Sum_probs=77.8
Q ss_pred CCccccchhHHHHHHhhhcC-----------CCCceEEEEeccCcchhhhHHHHHHHhhhccccceE-------eeehh-
Q 041795 184 DGLVGLNSRIEKIKSLLCIG-----------RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC-------FLGNV- 244 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-------~~~~~- 244 (471)
..++|.+..+++|.+++..- ....+-|.|+|.+|+|||+||+.+++.....|-..- |....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~ 283 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhH
Confidence 46899999999998877521 234567899999999999999999887543321100 00000
Q ss_pred ---hhhh----hc----CcccccCCH-------------hhHHHHhcCCCC--CCCCcEEEEEeCChhhh-----hhhCc
Q 041795 245 ---REES----EK----GVLDDVNKI-------------GQLQYLTCGLDR--FGPGSRIIITTRDKWIL-----DKFGV 293 (471)
Q Consensus 245 ---~~~~----~~----~VLDdv~~~-------------~~~~~l~~~~~~--~~~gs~IiiTTR~~~v~-----~~~~~ 293 (471)
.... .. -+||+++.. .....|+..+.. ...+.+||.||.....+ .....
T Consensus 284 ~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf 363 (489)
T 3hu3_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF 363 (489)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSS
T ss_pred HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcC
Confidence 0000 00 178888311 112233322221 12345666677655321 11122
Q ss_pred CCCceEEeCCCCHHHHHHHHHhcc
Q 041795 294 HDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 294 ~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
...+.++..+.++-.++|..++
T Consensus 364 --~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 364 --DREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp --CEEEECCCCCHHHHHHHHHHHT
T ss_pred --ceEEEeCCCCHHHHHHHHHHHH
Confidence 3468999999999999998775
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.44 E-value=0.00051 Score=70.45 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc------cceEe-eeh-----------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF------EGNCF-LGN----------- 243 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~-~~~----------- 243 (471)
..+.++||+.+++.+...|.... ..-+.|+|.+|+|||+||+.+++.+.... +..++ ++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~ 255 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDR 255 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTT
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHH
Confidence 34569999999999999987432 34567999999999999999999864321 11111 110
Q ss_pred hhhhhh------cC--cccccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhhhhCc-----CCCceEEeCCCCHHHHH
Q 041795 244 VREESE------KG--VLDDVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILDKFGV-----HDTNVYEVNGLRYHEAL 310 (471)
Q Consensus 244 ~~~~~~------~~--VLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~-----~~~~~~~l~~L~~~ea~ 310 (471)
...... .+ ++| -..+..+.|...+. ....++|.+|........... ....++.++.++.++..
T Consensus 256 ~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~ 331 (468)
T 3pxg_A 256 LKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESI 331 (468)
T ss_dssp HHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHH
Confidence 000000 01 456 22223334444443 123455555544331110000 00246899999999999
Q ss_pred HHHHhcc
Q 041795 311 ELFCNCA 317 (471)
Q Consensus 311 ~Lf~~~a 317 (471)
.++...+
T Consensus 332 ~iL~~~~ 338 (468)
T 3pxg_A 332 QILQGLR 338 (468)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998654
No 58
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00052 Score=68.36 Aligned_cols=149 Identities=25% Similarity=0.265 Sum_probs=86.1
Q ss_pred CCCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeeh-
Q 041795 183 FDGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGN- 243 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~- 243 (471)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|-.. -|+..
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchH
Confidence 35688999999999876541 334467789999999999999999999765544211 11111
Q ss_pred ---hhhhhhc--------CcccccCCH----------------hhHHHHhcCCCCC--CCCcEEEEEeCChhh-----hh
Q 041795 244 ---VREESEK--------GVLDDVNKI----------------GQLQYLTCGLDRF--GPGSRIIITTRDKWI-----LD 289 (471)
Q Consensus 244 ---~~~~~~~--------~VLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v-----~~ 289 (471)
+++.... -++|+++.. ..+..|+..++.+ ..+..||.||..... ..
T Consensus 227 e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllR 306 (405)
T 4b4t_J 227 SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLR 306 (405)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHS
T ss_pred HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcC
Confidence 1110000 056777521 1123343333322 234556667765543 22
Q ss_pred hhCcCCCceEEeCCCCHHHHHHHHHhccccCC-CCCchHHHHHHH
Q 041795 290 KFGVHDTNVYEVNGLRYHEALELFCNCAFKEN-HCPSGFLASSKR 333 (471)
Q Consensus 290 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~ 333 (471)
.-.. +..++++..+.++-.++|..+.-+-. ...-++..+++.
T Consensus 307 pGRf--D~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~ 349 (405)
T 4b4t_J 307 PGRI--DRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEK 349 (405)
T ss_dssp TTSS--CCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHH
T ss_pred CCcC--ceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHH
Confidence 2233 67889999898888888876542211 222346666554
No 59
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.41 E-value=6.5e-05 Score=66.44 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=29.6
Q ss_pred hhHHHHHHhhhcC-CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 191 SRIEKIKSLLCIG-RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 191 ~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++.+.+++..- ......+.|+|.+|+||||||+.+++.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444444321 12346899999999999999999999865
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.39 E-value=0.00029 Score=67.87 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHhhhcC------C-CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIG------R-PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|.+..++.+...+... . .....+.++|.+|+|||++|+.+++...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 35789998888888777532 1 1245899999999999999999998753
No 61
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.36 E-value=0.00044 Score=67.35 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
+.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 56899999998888877643 358899999999999999999876443
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.33 E-value=0.00032 Score=77.50 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=40.6
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+.++||+.+++++.+.|.... .+.+.|+|.+|+|||+||+.+++.+.
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 44679999999999999887432 34568999999999999999998863
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.31 E-value=0.00086 Score=73.07 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=40.7
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+.++||+.+++++.+.|... ...-+.|+|.+|+|||+||+.+++.+.
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999988743 344578999999999999999998763
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.31 E-value=0.00038 Score=67.18 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999988876433334567899999999999999998853
No 65
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.0012 Score=66.55 Aligned_cols=52 Identities=31% Similarity=0.383 Sum_probs=41.2
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
+++.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5678999999998876531 334467799999999999999999998765443
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00069 Score=68.42 Aligned_cols=133 Identities=29% Similarity=0.334 Sum_probs=78.3
Q ss_pred CCCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeehh
Q 041795 183 FDGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGNV 244 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~~ 244 (471)
-+++.|.++.+++|.+.+.. +-...+=|.++|++|+|||.||+++++.....|-.. -|+...
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ges 259 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHH
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHH
Confidence 35678999999988876531 234467899999999999999999999765443211 111110
Q ss_pred ----hhhhhc--------CcccccCCH----------------hhHHHHhcCCCCC--CCCcEEEEEeCChhhhhh----
Q 041795 245 ----REESEK--------GVLDDVNKI----------------GQLQYLTCGLDRF--GPGSRIIITTRDKWILDK---- 290 (471)
Q Consensus 245 ----~~~~~~--------~VLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~---- 290 (471)
+..... -++|+++.. ..+..|+..++.+ ..+..||.||-....+..
T Consensus 260 e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllR 339 (437)
T 4b4t_L 260 ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLR 339 (437)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTS
T ss_pred HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhC
Confidence 000000 056776421 1123343333222 235567778876543321
Q ss_pred -hCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 291 -FGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 291 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
... +..++++..+.++-.++|..+.
T Consensus 340 pGRf--D~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 340 PGRL--DRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp TTSE--EEEECCCCCCHHHHHHHHHHHH
T ss_pred CCcc--ceeeecCCcCHHHHHHHHHHHh
Confidence 112 4568888888887778877654
No 67
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=0.0006 Score=66.77 Aligned_cols=130 Identities=19% Similarity=0.267 Sum_probs=77.7
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-ccceE-ee--------ehhh----hhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNC-FL--------GNVR----EESE 249 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~-~~--------~~~~----~~~~ 249 (471)
..++|.+..++.|...+..+. ...+.++|.+|+||||+|+.++..+... +...+ -+ ..++ ....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 457898888888888887442 3338999999999999999999875321 11000 01 1111 1110
Q ss_pred ------c----CcccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhh-CcCCCceEEeCCCCHHHHHHHHHh
Q 041795 250 ------K----GVLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKF-GVHDTNVYEVNGLRYHEALELFCN 315 (471)
Q Consensus 250 ------~----~VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~ 315 (471)
. -|+|+++. ....+.|...+......+++|++|.... +...+ .. ...+++.+++.++....+..
T Consensus 103 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR--~~~~~~~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 103 TRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ--CTRFRFQPLPQEAIERRIAN 180 (340)
T ss_dssp BCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHH
T ss_pred hcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh--ceeEeccCCCHHHHHHHHHH
Confidence 0 17888853 3344444443333345667777775432 11111 11 34689999999998887776
Q ss_pred cc
Q 041795 316 CA 317 (471)
Q Consensus 316 ~a 317 (471)
.+
T Consensus 181 ~~ 182 (340)
T 1sxj_C 181 VL 182 (340)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 68
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.29 E-value=0.00017 Score=69.12 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=41.5
Q ss_pred CCCCccccchhHHHHHHhhhcC----------CCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIG----------RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+++|.+..++.|.+.+... ....+.+.|+|.+|+|||+||+.+++.....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4467999999999998877420 1235688999999999999999999876443
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.28 E-value=0.00057 Score=74.49 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHhhhcCC-------CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGR-------PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|.+..++.+...+.... .....+.++|.+|+|||+||+.+++...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999988887775211 1234799999999999999999998763
No 70
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=0.00052 Score=66.26 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=79.4
Q ss_pred cchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh---ccccceEeeeh---------hhhhhhc------
Q 041795 189 LNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY---KEFEGNCFLGN---------VREESEK------ 250 (471)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~---------~~~~~~~------ 250 (471)
-++.++.|.+.+..+. .....++|++|+||||+|+.+.+... ........+.. +++....
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc
Confidence 3456677777776443 67899999999999999999987521 11222233321 1221110
Q ss_pred -C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhhCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 251 -G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDK-WILDKFGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 251 -~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
+ |+|+++. ....+.|+..+....+.+.+|++|.+. .+...+.. . .+++++++.++..+.+.+..
T Consensus 80 ~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S--R-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--R-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--T-SEEEECCCCHHHHHHHHHHH
T ss_pred cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc--e-eEeCCCCCHHHHHHHHHHHh
Confidence 1 7899863 455666666555555677888777554 34444433 3 89999999999999887764
No 71
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00098 Score=67.35 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=42.2
Q ss_pred CCCccccchhHHHHHHhhh-----------cCCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 183 FDGLVGLNSRIEKIKSLLC-----------IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
-+++.|.++.+++|.+.+. .+-...+-|.++|++|+|||.||+++++.....|
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 3578999999999987653 1334578899999999999999999999765543
No 72
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00064 Score=68.61 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=84.2
Q ss_pred CCCccccchhHHHHHHhhh-----------cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeehh
Q 041795 183 FDGLVGLNSRIEKIKSLLC-----------IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGNV 244 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~~ 244 (471)
-.++.|.++.+++|.+.+. .+-...+-|.++|++|+|||.||+++++.....|-.. -|+...
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHH
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchH
Confidence 3578999999999887543 1234467899999999999999999999765443211 111111
Q ss_pred ----hhhhhc--------CcccccCCH----------------hhHHHHhcCCCCCC--CCcEEEEEeCChhhhhh----
Q 041795 245 ----REESEK--------GVLDDVNKI----------------GQLQYLTCGLDRFG--PGSRIIITTRDKWILDK---- 290 (471)
Q Consensus 245 ----~~~~~~--------~VLDdv~~~----------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~---- 290 (471)
+..... -++|+++.. .....|+..+..+. .+..||.||.....+..
T Consensus 260 e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllR 339 (434)
T 4b4t_M 260 AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLR 339 (434)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCS
T ss_pred HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhc
Confidence 000000 056776411 01233444444332 24456667766543321
Q ss_pred -hCcCCCceEEeCCCCHHHHHHHHHhccccCC-CCCchHHHHHHH
Q 041795 291 -FGVHDTNVYEVNGLRYHEALELFCNCAFKEN-HCPSGFLASSKR 333 (471)
Q Consensus 291 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~ 333 (471)
... +..++++..+.++-.++|..+.-+-. ...-++..+++.
T Consensus 340 pGRf--D~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~ 382 (434)
T 4b4t_M 340 SGRL--DRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARS 382 (434)
T ss_dssp TTSE--EEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHH
T ss_pred CCce--eEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHh
Confidence 122 56788998888888888865542211 222345555543
No 73
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.22 E-value=0.0019 Score=63.10 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=76.8
Q ss_pred hhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccc---------------------cceEeeeh------
Q 041795 191 SRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF---------------------EGNCFLGN------ 243 (471)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~~~~------ 243 (471)
+..+.+...+..+ .-...+.++|..|+|||++|+.+++.+.... ....++..
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 87 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNT 87 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSS
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCC
Confidence 3445555555432 2345789999999999999999998754321 11222321
Q ss_pred -----hhhhhhc-------C-----cccccCC--HhhHHHHhcCCCCCCCCcEEEEEeCChh-hhhhhCcCCCceEEeCC
Q 041795 244 -----VREESEK-------G-----VLDDVNK--IGQLQYLTCGLDRFGPGSRIIITTRDKW-ILDKFGVHDTNVYEVNG 303 (471)
Q Consensus 244 -----~~~~~~~-------~-----VLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~~~~~~~~~~l~~ 303 (471)
+++.... + |+|+++. ....+.|+..+.....++.+|++|.+.. +...+.. ....+++++
T Consensus 88 ~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S-Rc~~~~~~~ 166 (334)
T 1a5t_A 88 LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS-RCRLHYLAP 166 (334)
T ss_dssp BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT-TSEEEECCC
T ss_pred CCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh-cceeeeCCC
Confidence 1111100 1 8899874 3445666655555456777777776653 2222211 145799999
Q ss_pred CCHHHHHHHHHhcc
Q 041795 304 LRYHEALELFCNCA 317 (471)
Q Consensus 304 L~~~ea~~Lf~~~a 317 (471)
++.++..+.+....
T Consensus 167 ~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 167 PPEQYAVTWLSREV 180 (334)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999888765
No 74
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.07 E-value=0.0015 Score=66.83 Aligned_cols=133 Identities=23% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCCccccchhHHHHHHhhhc----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeeh--
Q 041795 183 FDGLVGLNSRIEKIKSLLCI----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGN-- 243 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~-- 243 (471)
..+++|.++.++++.+.+.. +..-.+-|.|+|++|+|||+||+.+++.....|-.. .|+..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~ 94 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA 94 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccH
Confidence 35688999888887775431 111234588999999999999999998754332110 01100
Q ss_pred --hhhhhh----c----CcccccCCH----------------hhHHHHhcCCCCC--CCCcEEEEEeCChhhhhh--h--
Q 041795 244 --VREESE----K----GVLDDVNKI----------------GQLQYLTCGLDRF--GPGSRIIITTRDKWILDK--F-- 291 (471)
Q Consensus 244 --~~~~~~----~----~VLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~--~-- 291 (471)
.+.... . -+||+++.. ..+..|+..+..+ ..+..||.||.....+.. .
T Consensus 95 ~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~ 174 (476)
T 2ce7_A 95 ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRP 174 (476)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGST
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhccc
Confidence 000000 0 167888531 1233443322211 235667777876654321 1
Q ss_pred -CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 292 -GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 292 -~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.. ...+.++..+.++-.+++..++
T Consensus 175 gRF--d~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 175 GRF--DKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp TSS--CEEEECCCCCHHHHHHHHHHHH
T ss_pred Ccc--eeEeecCCCCHHHHHHHHHHHH
Confidence 12 3478888888777777776544
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.04 E-value=0.0021 Score=69.97 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc------ccceEeee------------h
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE------FEGNCFLG------------N 243 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~------------~ 243 (471)
..+.++||+.+++++...|.... ..-+.++|.+|+|||++|+.+++.+... ....++-. .
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~ 255 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDR 255 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTT
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHH
Confidence 34579999999999999987432 3347899999999999999999886321 11111110 1
Q ss_pred hhhhhh----c--C--cccccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhhhhCc-----CCCceEEeCCCCHHHHH
Q 041795 244 VREESE----K--G--VLDDVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILDKFGV-----HDTNVYEVNGLRYHEAL 310 (471)
Q Consensus 244 ~~~~~~----~--~--VLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~-----~~~~~~~l~~L~~~ea~ 310 (471)
+..... . + ++| ...+..+.|...+. ....++|.||........... ..-..+.++.++.++..
T Consensus 256 l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~ 331 (758)
T 3pxi_A 256 LKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESI 331 (758)
T ss_dssp HHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHH
Confidence 111000 0 1 556 22223334444443 223556666654431111110 00246899999999999
Q ss_pred HHHHhcc
Q 041795 311 ELFCNCA 317 (471)
Q Consensus 311 ~Lf~~~a 317 (471)
.++....
T Consensus 332 ~il~~~~ 338 (758)
T 3pxi_A 332 QILQGLR 338 (758)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9988543
No 76
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0016 Score=65.24 Aligned_cols=148 Identities=22% Similarity=0.224 Sum_probs=83.0
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeehhh
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGNVR 245 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~~~ 245 (471)
+++.|.++.+++|.+.+.. +-...+=|.++|++|+|||.||+++++.....|-.. -|+....
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHH
Confidence 5678999999988876531 223467899999999999999999999765543211 1111111
Q ss_pred ----hhhhc--------CcccccCCH----------------hhHHHHhcCCCCC--CCCcEEEEEeCChhhhhhh----
Q 041795 246 ----EESEK--------GVLDDVNKI----------------GQLQYLTCGLDRF--GPGSRIIITTRDKWILDKF---- 291 (471)
Q Consensus 246 ----~~~~~--------~VLDdv~~~----------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~---- 291 (471)
..... -++|+++.. ..+..|+..++.+ ..+..||.||-....+...
T Consensus 262 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRp 341 (437)
T 4b4t_I 262 RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRP 341 (437)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCT
T ss_pred HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcC
Confidence 00000 056766411 1122333322222 2345566777665543211
Q ss_pred -CcCCCceEEeCCCCHHHHHHHHHhccccCC-CCCchHHHHHHH
Q 041795 292 -GVHDTNVYEVNGLRYHEALELFCNCAFKEN-HCPSGFLASSKR 333 (471)
Q Consensus 292 -~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~ 333 (471)
.. +..++++..+.++-.++|..+.-+-. ...-++..++..
T Consensus 342 GRf--D~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~ 383 (437)
T 4b4t_I 342 GRI--DRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTT 383 (437)
T ss_dssp TTE--EEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHH
T ss_pred Cce--eEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHh
Confidence 12 45677888888887888876552211 122345555543
No 77
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00059 Score=66.05 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=41.2
Q ss_pred CccccchhHHHHHHhhhc--CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 185 GLVGLNSRIEKIKSLLCI--GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.+.||++++++|...|.. .......+.|+|.+|+|||++++.+++.+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 378999999999988763 2345678899999999999999999998753
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.72 E-value=0.0048 Score=66.93 Aligned_cols=51 Identities=29% Similarity=0.360 Sum_probs=40.4
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
+++.|.++.+++|.+.+.. +....+-|.++|++|+|||+||+++++....+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4678999999998886531 12346789999999999999999999876544
No 79
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.71 E-value=0.0023 Score=66.87 Aligned_cols=50 Identities=28% Similarity=0.302 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHhhhc----CCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 185 GLVGLNSRIEKIKSLLCI----GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
+++|.+...+.+.+.+.. .......+.|+|.+|+||||||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 367877777776554431 11245689999999999999999999876443
No 80
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.68 E-value=0.0019 Score=57.89 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=38.9
Q ss_pred CCCccccch----hHHHHHHhhhcCCCC--ceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 183 FDGLVGLNS----RIEKIKSLLCIGRPD--FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 183 ~~~~vGr~~----~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.++|++... .++.+.+++...... .+.+.|+|.+|+|||+||+.+++.........+++.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 355666543 334445555433221 268899999999999999999998765444444443
No 81
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.62 E-value=0.0013 Score=61.42 Aligned_cols=51 Identities=29% Similarity=0.248 Sum_probs=37.3
Q ss_pred CCCCccccchhHHHHHHhhhc--C--------CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI--G--------RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++++|.+..++++.+++.. . ....+-+.|+|.+|+||||||+.+++...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 345689998888877665431 0 11234588999999999999999998754
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.51 E-value=0.0044 Score=67.47 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCccccchhHHHHHHhhhcC-------CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIG-------RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|.+..++.+...+... ......+.++|.+|+|||+||+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45889998888887766421 11245799999999999999999998763
No 83
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.49 E-value=0.0012 Score=63.26 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhhc------------CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCI------------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+.++|.+..++.+...+.. .......+.|+|.+|+|||+||+.+++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4588999988888877653 0122456889999999999999999987643
No 84
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.39 E-value=0.0016 Score=63.53 Aligned_cols=50 Identities=28% Similarity=0.252 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHhhhcC---CCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCIG---RPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++|.+..++.+...+..+ +.....+.|+|.+|+||||||+.+++.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45788887777777666532 233467899999999999999999998643
No 85
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.32 E-value=0.02 Score=49.69 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=67.3
Q ss_pred cccccCcchHHHHHHHHHhCCcceeecCCCCC----C----CCCCcHHHHHHhhhcceEEEEEccCcccchhhHHHHHHH
Q 041795 19 RGGDTRDNFTSHLYAALCRKKIKTFINGDEIR----R----GDDISPALFTAIQGSKISVIVLSKHYASSKWCLHELVKI 90 (471)
Q Consensus 19 ~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~----~----g~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 90 (471)
+..| -.....|..--....+-.|.|.++.. - -+.|-..|.+.|..|+.+|+++|++...|.|..+|+..+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 3445 33456666555665666678876552 2 235778888899999999999999999999999999888
Q ss_pred HHhhhcCCCeEEeEEeecC-CCcccccCCchHHHH
Q 041795 91 LECKSTNGQIVVPVFYHVD-PSDVRKQTGSFRDAF 124 (471)
Q Consensus 91 ~~~~~~~~~~viPif~~v~-ps~vr~q~~~~~~~f 124 (471)
+. +.+.+||-|..+-+ .+++..-.|+|....
T Consensus 105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~ 136 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQI 136 (189)
T ss_dssp TT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHH
T ss_pred HH---hcCCcEEEEECCccccchhhhccccchhhH
Confidence 72 33456777653322 224444445544333
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.10 E-value=0.013 Score=64.63 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHhhhcC-----C--CCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 185 GLVGLNSRIEKIKSLLCIG-----R--PDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~-----~--~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.++|.+..++.+...+... . .....+.|+|.+|+|||+||+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999888887776521 1 123589999999999999999999875
No 87
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.06 E-value=0.0028 Score=55.39 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|.|+|++|+||||+|+.+...+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988764
No 88
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.06 E-value=0.0042 Score=61.30 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHhhh-------------cCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 186 LVGLNSRIEKIKSLLC-------------IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 186 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++|.+..++.+...+. ........+.++|.+|+|||++|+.+++....
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6788888887777662 11113457899999999999999999987643
No 89
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.06 E-value=0.0049 Score=55.59 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.4
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
....+|+|+|..|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999987765
No 90
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.96 E-value=0.0035 Score=54.24 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|.|.|++|+||||+|+.+...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987754
No 91
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.91 E-value=0.0062 Score=54.62 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=31.7
Q ss_pred cchhHHHHHHhhhcC-CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 189 LNSRIEKIKSLLCIG-RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 189 r~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
|++.++.+.+.+... .....+|+|.|..|+|||||++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555565555432 23467999999999999999999987653
No 92
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.90 E-value=0.0062 Score=62.09 Aligned_cols=49 Identities=35% Similarity=0.282 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhh---cCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 184 DGLVGLNSRIEKIKSLLC---IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+.++|.+..++.+..++. .+....+-+.++|++|+|||+||+.+++...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 679999998887665443 3333346789999999999999999999865
No 93
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.87 E-value=0.0051 Score=67.31 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=41.7
Q ss_pred CCCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 183 FDGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
-++++|.+..+++|.+++.. +-.....|.|+|.+|+||||||+.++......
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 35689999999999988753 22345679999999999999999998876543
No 94
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.78 E-value=0.0046 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...|.|+|++|+||||+|+.+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 95
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.77 E-value=0.0044 Score=53.53 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.7
Q ss_pred eEEEEeccCcchhhhHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAI 227 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v 227 (471)
.+|+|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 96
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.76 E-value=0.0046 Score=54.37 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+.|.|+|++|+||||+|+.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.74 E-value=0.036 Score=51.92 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=29.6
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-+..+|....+.-..+.++|++|.|||.+|..+++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34567777644244567999999999999999999985
No 98
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.72 E-value=0.0095 Score=56.84 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 204 RPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.....+|+|+|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345779999999999999999998876543
No 99
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.59 E-value=0.0062 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.5
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 100
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.53 E-value=0.0058 Score=56.87 Aligned_cols=50 Identities=26% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCCccccchhHHHHHHhhhc--C--------CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 183 FDGLVGLNSRIEKIKSLLCI--G--------RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++++|.+..+.++.++... . -.-.+-+.|+|.+|+||||||+.++....
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678888777766654321 0 01122389999999999999999998754
No 101
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.52 E-value=0.0098 Score=58.09 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=31.3
Q ss_pred hhHHHHHHhhhc--CCCCceEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 191 SRIEKIKSLLCI--GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 191 ~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
.-.+.+.+.+.. ..+....|.|+|++|+||||+++.++..+...|
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444444431 233466799999999999999999998766554
No 102
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.51 E-value=0.0054 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|+|+|++|+|||||++.+...+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 103
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.44 E-value=0.0074 Score=53.30 Aligned_cols=24 Identities=42% Similarity=0.510 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 104
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.43 E-value=0.0084 Score=57.28 Aligned_cols=29 Identities=31% Similarity=0.482 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..+.+.++|++|+|||+||+.+++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45688999999999999999999986443
No 105
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.41 E-value=0.011 Score=58.59 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+.++|.+|+|||+||+.+++....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346889999999999999999987643
No 106
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.38 E-value=0.0082 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..|.|.|++|+||||+|+.+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987653
No 107
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.35 E-value=0.01 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|.|.|++|+||||+|+.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 108
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.34 E-value=0.0084 Score=56.67 Aligned_cols=51 Identities=25% Similarity=0.269 Sum_probs=36.2
Q ss_pred CCCCccccchhHHHHHHhhhc--C--------CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI--G--------RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++++|.+..++++.++... . -.-.+-+.|+|.+|+||||||+.++....
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 445688888877777665431 0 01112389999999999999999998764
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.34 E-value=0.0099 Score=53.14 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+|+|+|++|.||||||+.+...+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999988765
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.33 E-value=0.0099 Score=50.68 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.-..++|+|..|+|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999987654
No 111
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.33 E-value=0.0065 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+.|.|+|++|+||||+|+.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998765
No 112
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.32 E-value=0.0067 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|+|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998775
No 113
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.31 E-value=0.009 Score=51.66 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...|+|.|+.|+||||+|+.+...+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 114
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.28 E-value=0.014 Score=55.22 Aligned_cols=50 Identities=26% Similarity=0.130 Sum_probs=33.0
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.++.|.++.+++|.+.+.. +-.-.+-++|+|.+|+||||||+.++.....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 4567777777776654320 1011223999999999999999999987543
No 115
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.26 E-value=0.012 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.009 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
....|+|.|++|+||||+|+.+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
No 116
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.21 E-value=0.0097 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=22.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|.|+|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987653
No 117
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.21 E-value=0.0097 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.6
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999988765
No 118
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.21 E-value=0.009 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|+|.|+.|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999988754
No 119
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.18 E-value=0.01 Score=61.00 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=37.0
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+.++|.+..++.+...+..+ .-|.|+|.+|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 45899999998888777643 368899999999999999998865
No 120
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.17 E-value=0.011 Score=57.68 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=34.7
Q ss_pred CCCCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 182 NFDGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++++|.+..++.+...+... ...-+.|+|.+|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456899988665544333211 123488999999999999999998754
No 121
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.15 E-value=0.014 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|+|+.|.||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 122
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.14 E-value=0.0096 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.4
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|.|.|++|+||||+|+.+...+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988653
No 123
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.14 E-value=0.0091 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=18.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+|.|.|++|+||||+|+.+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987654
No 124
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.13 E-value=0.011 Score=51.90 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999987543
No 125
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.11 E-value=0.0083 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+|.|+|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998764
No 126
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.012 Score=51.80 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|.|++|+||||+|+.+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999988764
No 127
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.03 E-value=0.012 Score=52.55 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|+|+|+.|+|||||++.+...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998765
No 128
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.02 E-value=0.011 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|.|++|+||||+|+.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 129
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.01 E-value=0.015 Score=51.99 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.00 E-value=0.013 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.257 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 131
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.99 E-value=0.0096 Score=52.85 Aligned_cols=28 Identities=39% Similarity=0.501 Sum_probs=23.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
|.|.|+|++|+|||||++.+.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999887654433
No 132
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.99 E-value=0.01 Score=52.38 Aligned_cols=28 Identities=39% Similarity=0.501 Sum_probs=23.7
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
++++|+|+.|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999988765433
No 133
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.99 E-value=0.012 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.2
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.+++|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 134
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.98 E-value=0.02 Score=50.36 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+|.|+|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987653
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.95 E-value=0.021 Score=54.33 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 136
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.93 E-value=0.026 Score=54.24 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=29.7
Q ss_pred hHHHHHHhhhcCCC-CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 192 RIEKIKSLLCIGRP-DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 192 ~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++.+.+++..-.+ ....+.|+|.+|+|||+||..+++...
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445555553222 246789999999999999999999865
No 137
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.93 E-value=0.011 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..|.|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998865
No 138
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.92 E-value=0.014 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..|+|.|++|+||||+|+.+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 139
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.88 E-value=0.011 Score=53.15 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++|.|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988753
No 140
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.88 E-value=0.014 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+++|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987654
No 141
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.88 E-value=0.014 Score=51.81 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999875
No 142
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.87 E-value=0.012 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 143
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.86 E-value=0.018 Score=50.57 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|.|++|+||||+|+.+...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 144
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.85 E-value=0.013 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+|+|.|++|+||||+|+.+...+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988653
No 145
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.85 E-value=0.014 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+|+|+|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 146
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.82 E-value=0.015 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..|.|.|++|+||||+|+.+...+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999887654
No 147
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.82 E-value=0.015 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+++|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 148
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.81 E-value=0.013 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 149
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.79 E-value=0.016 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
No 150
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.78 E-value=0.024 Score=52.71 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+|.|+|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987653
No 151
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.77 E-value=0.13 Score=51.91 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+|.++|.+|+||||++..++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999998876544
No 152
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.74 E-value=0.016 Score=50.43 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=24.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.++++|.|..|+|||||+..+...+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5789999999999999999998876543
No 153
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.73 E-value=0.016 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|+|+.|+|||||++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998654
No 154
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.73 E-value=0.016 Score=52.00 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|+|+|.+|.||||||+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987653
No 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.71 E-value=0.017 Score=54.02 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+|.|+|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988643
No 156
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.70 E-value=0.018 Score=53.60 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+|+|.|+.|+||||+|+.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999988644
No 157
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.70 E-value=0.027 Score=50.53 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.2
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+..+..++.. -+.-+.+.|+|++|+||||+|..+++.+..
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5566666652 233457999999999999999999988654
No 158
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.69 E-value=0.016 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988763
No 159
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.69 E-value=0.029 Score=57.59 Aligned_cols=131 Identities=21% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCCCccccchhHHHHHHhhhc--C--------CCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeeh--------
Q 041795 182 NFDGLVGLNSRIEKIKSLLCI--G--------RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGN-------- 243 (471)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~-------- 243 (471)
..++++|.+..+.++.++... . ..-.+-+.|+|.+|+||||||+.++......| +.+..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~---i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF---ITASGSDFVEMFV 105 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE---EEEEGGGGTSSCT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEEehhHHHHhhh
Confidence 456789999888877765431 1 01123489999999999999999998754221 11111
Q ss_pred ------hhhhhhc--------CcccccCCH----------------hhHHHHhcCCCCCC--CCcEEEEEeCChhhhhh-
Q 041795 244 ------VREESEK--------GVLDDVNKI----------------GQLQYLTCGLDRFG--PGSRIIITTRDKWILDK- 290 (471)
Q Consensus 244 ------~~~~~~~--------~VLDdv~~~----------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~- 290 (471)
++..... -++|+++.. ..+..++..+..+. .+..++.||.....+..
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 0010000 167887421 12234443333222 23445556666654321
Q ss_pred ----hCcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 291 ----FGVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 291 ----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
... ...+.++..+.++-.+++..++
T Consensus 186 Llr~gRf--dr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 186 LLRPGRF--DRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp TSSTTSS--CCEEECCCCCHHHHHHHHHHTT
T ss_pred ccccccc--ceEEecCCCCHHHHHHHHHHHH
Confidence 112 4578899999888888887664
No 160
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.68 E-value=0.017 Score=51.96 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+|+|+|..|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987654
No 161
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.67 E-value=0.018 Score=51.75 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=23.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...|+|.|+.|+||||+|+.+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987653
No 162
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.66 E-value=0.017 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...|.|.|++|+||||+|+.+...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 163
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.66 E-value=0.025 Score=51.25 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..|.+++..+-..-.+++|+|.+|+|||||++.++....
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 344444431222346899999999999999999987654
No 164
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.65 E-value=0.013 Score=51.10 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=19.4
Q ss_pred ceEEEEeccCcchhhhHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~ 228 (471)
-.+++|+|..|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999743
No 165
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.64 E-value=0.025 Score=54.63 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=32.4
Q ss_pred cccchhHHHHHHhhhcC--CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 187 VGLNSRIEKIKSLLCIG--RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 187 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|-...+..+...+... .....+|+|.|..|+||||||+.+...+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44445555555444432 34467999999999999999999876654
No 166
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.64 E-value=0.015 Score=52.03 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 167
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.57 E-value=0.035 Score=54.48 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=48.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccceEe-eehh-----------------hhh-------h----hc----Cccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF-LGNV-----------------REE-------S----EK----GVLD 254 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~-~~~~-----------------~~~-------~----~~----~VLD 254 (471)
.+++|+|..|.|||||.+.+...+.......+. +.+. ... . .. -++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 499999999999999999987765432111111 1100 000 0 00 0789
Q ss_pred ccCCHhhHHHHhcCCCCCCCCcEEEEEeCChhhhh
Q 041795 255 DVNKIGQLQYLTCGLDRFGPGSRIIITTRDKWILD 289 (471)
Q Consensus 255 dv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 289 (471)
.+.+.+.++.+.... ..|..||+||.+...+.
T Consensus 204 Ep~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 204 EMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 988877766654432 23666899998776554
No 168
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.55 E-value=0.018 Score=52.20 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999987653
No 169
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.52 E-value=0.029 Score=51.28 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..|.++|..+-..-.+++|+|.+|+|||||+..++..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445555422234569999999999999999999875
No 170
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.49 E-value=0.029 Score=56.60 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=36.1
Q ss_pred CCccccchhHHHHHHhhhc------------CCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 184 DGLVGLNSRIEKIKSLLCI------------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..++|-+..++.|...+.. .....+-|.++|++|+||||+|+.++......
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3477877777777655421 01124568999999999999999999876443
No 171
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.49 E-value=0.018 Score=51.55 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..+|+|.|+.|+||||+|+.+...+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887543
No 172
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.48 E-value=0.021 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999998875
No 173
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.47 E-value=0.019 Score=52.00 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=26.9
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|..+|..+-..-.+++|+|.+|+|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222345799999999999999999998643
No 174
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.46 E-value=0.023 Score=51.67 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.9
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...++|.|.|++|+||||.|+.+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 175
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.45 E-value=0.022 Score=52.18 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=27.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
.-.++.|.|.+|+||||||..++......=..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999999988776543323455554
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.42 E-value=0.025 Score=50.82 Aligned_cols=35 Identities=31% Similarity=0.210 Sum_probs=26.0
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHH
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.|.++|..+-..-.++.|+|.+|+||||||..++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444432223456899999999999999999887
No 177
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.39 E-value=0.022 Score=50.12 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=21.4
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.38 E-value=0.025 Score=49.38 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...|+|.|+.|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988653
No 179
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.38 E-value=0.014 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|+|.|..|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.34 E-value=0.051 Score=52.68 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+++|+|..|+|||||++.++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999876554
No 181
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.32 E-value=0.022 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997754
No 182
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.27 E-value=0.03 Score=50.67 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=27.9
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+.+...+.. .....|+|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444444432 2468899999999999999999887643
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.23 E-value=0.018 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..|+|+|+.|+||||+++.+...+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999988653
No 184
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.22 E-value=0.024 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.6
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.22 E-value=0.062 Score=51.90 Aligned_cols=29 Identities=31% Similarity=0.364 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+++|+|.+|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999998876543
No 186
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.20 E-value=0.023 Score=50.78 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999886543
No 187
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.18 E-value=0.023 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|+|+.|+|||||++.+...+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998654
No 188
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.18 E-value=0.024 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 189
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.18 E-value=0.061 Score=51.58 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=24.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+++|+|.+|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 36799999999999999999998876543
No 190
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.17 E-value=0.065 Score=51.62 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=33.7
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 192 RIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 192 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
-+..|.+++ .+-..-.++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 54 G~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 54 GFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 344455555 33344568999999999999999998876543324555554
No 191
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.17 E-value=0.019 Score=51.33 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+.++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999887553
No 192
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.15 E-value=0.022 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...|.|.|++|+||||+|+.+...+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
No 193
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.12 E-value=0.039 Score=52.90 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=24.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+++|+|.+|+|||||+..++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999998776543
No 194
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.11 E-value=0.021 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.048 Sum_probs=22.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...|.|.|++|+||||+|+.+...+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987653
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.09 E-value=0.065 Score=52.52 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++...+........+|+|+|.+|+|||||+..+.....
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444443345678999999999999999999877653
No 196
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.07 E-value=0.024 Score=50.45 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998876
No 197
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.04 E-value=0.029 Score=54.07 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
....+|+|+|..|+|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4467999999999999999999987654
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.02 E-value=0.034 Score=50.14 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=30.3
Q ss_pred chhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 190 NSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.+..+.+...+.. ...++|+|+|.+|+|||||+..+......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3444555554432 24689999999999999999998876543
No 199
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.01 E-value=0.03 Score=50.42 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+|.|.|+.|+||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999988764
No 200
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.01 E-value=0.031 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|+|.|..|.|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999988754
No 201
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.92 E-value=0.027 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|+|||||++.+...+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 202
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.92 E-value=0.044 Score=53.69 Aligned_cols=50 Identities=32% Similarity=0.227 Sum_probs=35.0
Q ss_pred HHHHHHhhh-cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 193 IEKIKSLLC-IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 193 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
...|...|. .+-..-.++.|+|.+|+||||||..++......=..++|++
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345666665 33344679999999999999999999887554323345654
No 203
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.79 E-value=0.033 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.6
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987653
No 204
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.78 E-value=0.036 Score=50.03 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 205
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.76 E-value=0.027 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..|.|.|++|+||||+|+.+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.76 E-value=0.086 Score=50.33 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..+++++|.+|+||||++..++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999877654
No 207
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.76 E-value=0.033 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHH
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 208
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.66 E-value=0.047 Score=53.45 Aligned_cols=50 Identities=24% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHhhh-cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 193 IEKIKSLLC-IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 193 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
...|..+|. .+-..-+++.|+|.+|+||||||..++......=..++|++
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555554 23344579999999999999999999876544323455655
No 209
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.65 E-value=0.027 Score=51.18 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999988754
No 210
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.63 E-value=0.036 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.6
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988754
No 211
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.56 E-value=0.028 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=16.4
Q ss_pred ceEEEEeccCcchhhhHHHHHH-Hhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIF-NLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 231 (471)
-.+++|+|..|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 653
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.56 E-value=0.05 Score=49.93 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.-.+++|+|..|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998854
No 213
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.55 E-value=0.053 Score=53.18 Aligned_cols=51 Identities=29% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHHHHHhhh-cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeeeh
Q 041795 193 IEKIKSLLC-IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLGN 243 (471)
Q Consensus 193 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 243 (471)
...|..+|. .+-..-+++.|.|.+|+||||||..++......=..++|++.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 344555554 232345699999999999999999988775543335666653
No 214
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.54 E-value=0.032 Score=48.69 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999876554
No 215
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.53 E-value=0.034 Score=52.98 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=20.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999987643
No 216
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.50 E-value=0.069 Score=45.85 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=23.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.-.+++|+|..|.|||||.+.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998865
No 217
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.46 E-value=0.082 Score=53.18 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++|.++|.+|+||||++..++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999877654
No 218
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.46 E-value=0.037 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.6
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 219
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.46 E-value=0.039 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 220
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.45 E-value=0.039 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...|.|.|+.|+||||+|+.+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988753
No 221
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.45 E-value=0.091 Score=51.55 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+++|+|..|+|||||++.++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999887654
No 222
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.43 E-value=0.04 Score=50.65 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+|+|.|++|+||||+|+.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 223
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.42 E-value=0.032 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++|.|+|+.|+||||||..++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998654
No 224
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.38 E-value=0.038 Score=53.32 Aligned_cols=25 Identities=28% Similarity=0.281 Sum_probs=22.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
++|.|+|+.|+||||||..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.37 E-value=0.067 Score=53.92 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..++|.++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999998876543
No 226
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.35 E-value=0.06 Score=50.39 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=26.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccceEe
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCF 240 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 240 (471)
.-.+++|+|..|.|||||.+.+...+...+.+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 34689999999999999999988765543344443
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.30 E-value=0.038 Score=49.08 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=21.7
Q ss_pred EEEEeccCcchhhhHHHHHHHhhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
+++|+|..|+|||||.+.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988765
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.29 E-value=0.79 Score=43.16 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=24.7
Q ss_pred CcHHHHHHhhhcceEEEEEccCcccchhhHHHHHHH
Q 041795 55 ISPALFTAIQGSKISVIVLSKHYASSKWCLHELVKI 90 (471)
Q Consensus 55 ~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~ 90 (471)
....+.+.+++++++|.|+.-.-..+..| .++...
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~ 47 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDI 47 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHH
Confidence 44678889999999999998665555554 234443
No 229
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.28 E-value=0.068 Score=51.18 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+++|+|..|+|||||++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999887654
No 230
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.25 E-value=0.041 Score=50.08 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988754
No 231
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.24 E-value=0.061 Score=56.75 Aligned_cols=47 Identities=34% Similarity=0.426 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++......
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 45889988888888777643 478999999999999999999876443
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.21 E-value=0.1 Score=53.23 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+++|+|.+|+|||||++.++..+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3579999999999999999999877654
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.19 E-value=0.048 Score=47.70 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++++|+|..|+|||||+..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999987754
No 234
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.17 E-value=0.047 Score=52.15 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.7
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+++++|.+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987765
No 235
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.14 E-value=0.049 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.3
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+|.|.|++|+||||.|+.+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
No 236
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.12 E-value=0.11 Score=50.55 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=34.2
Q ss_pred ccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 188 GLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
|...-...|.+++. +-..-.++.|.|.+|+||||||..++.....+=..++|+
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 33333445555553 223346899999999999999999988755432234444
No 237
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.10 E-value=0.049 Score=52.27 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987654
No 238
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.09 E-value=0.047 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 239
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.01 E-value=0.056 Score=52.07 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=24.3
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++.++|+|.|=||+||||.|..+.-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 45799999999999999999888776544
No 240
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.89 E-value=0.06 Score=49.31 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|+|.|+.|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 241
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.88 E-value=0.078 Score=53.45 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.++|+|+|.+|+||||++..++.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999998876543
No 242
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.88 E-value=0.078 Score=52.40 Aligned_cols=29 Identities=38% Similarity=0.361 Sum_probs=24.5
Q ss_pred CCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 203 GRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 203 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+-+....++|+|++|.|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34456799999999999999999998754
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.86 E-value=0.057 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457789999999999999999876
No 244
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.86 E-value=0.089 Score=49.92 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.-.+++|.|.+|+|||||+..++..+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34689999999999999999998876543
No 245
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.77 E-value=0.05 Score=49.07 Aligned_cols=23 Identities=43% Similarity=0.249 Sum_probs=20.7
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.+++|+|..|.|||||.+.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.72 E-value=0.13 Score=50.19 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=28.6
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..|..+|..+-..-.++.|+|.+|+||||||..++...
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555554333456799999999999999999988763
No 247
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.72 E-value=0.053 Score=54.47 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|.|+|++|+||||+|+.++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999987754
No 248
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.70 E-value=0.079 Score=54.46 Aligned_cols=47 Identities=4% Similarity=-0.082 Sum_probs=32.4
Q ss_pred cccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 187 VGLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..|.+..+.+.+..........+|.+.|+.|+||||+|+.+...+..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34444444555544211223578999999999999999999998753
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.70 E-value=0.055 Score=49.95 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.. .+++|+|..|.|||||.+.++.-+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999987654
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.62 E-value=0.052 Score=59.31 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=75.9
Q ss_pred CCCccccchhHHHHHHhhhcC-----------CCCceEEEEeccCcchhhhHHHHHHHhhhccccce-------Eeeehh
Q 041795 183 FDGLVGLNSRIEKIKSLLCIG-----------RPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGN-------CFLGNV 244 (471)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~~ 244 (471)
-.+++|.+..++.|.+.+... -.....+.++|.+|+|||+||+.+++.....|-.. .|+...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~ 555 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTS
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCcc
Confidence 356789999888888876421 12245688999999999999999998765443211 121111
Q ss_pred ----hhhhh--------cCcccccCCH----------------hhHHHHhcCCCCCC--CCcEEEEEeCChhhhhh-h--
Q 041795 245 ----REESE--------KGVLDDVNKI----------------GQLQYLTCGLDRFG--PGSRIIITTRDKWILDK-F-- 291 (471)
Q Consensus 245 ----~~~~~--------~~VLDdv~~~----------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~-~-- 291 (471)
..... .-++|+++.. .....|+..+.... .+..||.||.....+.. +
T Consensus 556 ~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allr 635 (806)
T 1ypw_A 556 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 635 (806)
T ss_dssp SHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSS
T ss_pred HHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhC
Confidence 00000 0178887531 12355666655332 23445556654322211 1
Q ss_pred --CcCCCceEEeCCCCHHHHHHHHHhcc
Q 041795 292 --GVHDTNVYEVNGLRYHEALELFCNCA 317 (471)
Q Consensus 292 --~~~~~~~~~l~~L~~~ea~~Lf~~~a 317 (471)
.. ...+.++..+.++-..++..+.
T Consensus 636 pgRf--~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 636 PGRL--DQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp GGGT--TSCCCCCCCCCSHHHHHTTTTT
T ss_pred cccc--CceeecCCCCHHHHHHHHHHHh
Confidence 11 3467788888888888887654
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.57 E-value=0.089 Score=50.82 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..|..+|..+-..-.++.|+|.+|+||||||..++...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34445554222345699999999999999999988764
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.56 E-value=0.061 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.++|.|.|+.|+||||||..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35899999999999999999987653
No 253
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.46 E-value=0.1 Score=53.54 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=23.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..++|+|+|.+|+||||++..++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999876554
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.45 E-value=0.065 Score=52.45 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=27.8
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.|..+|..+-..-.++.|+|.+|+|||||+..++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444454333446799999999999999999998765
No 255
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.41 E-value=0.17 Score=51.35 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcccc-ceEeee
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFE-GNCFLG 242 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~ 242 (471)
...|..++ .+-..-.++.|.|.+|+||||||..++..+...-. .++|+.
T Consensus 190 ~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 190 FTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34444444 22234568999999999999999999887654322 455544
No 256
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.41 E-value=0.12 Score=49.51 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=27.4
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhccc--cceEeeeh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYKEF--EGNCFLGN 243 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~ 243 (471)
++.|.|.+|+||||||.+++......+ ..++|++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 789999999999999999887765442 34667763
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.35 E-value=0.059 Score=49.55 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999988653
No 258
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.33 E-value=0.095 Score=54.50 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=24.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
-.+++|+|+.|+|||||++.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 468999999999999999999988654
No 259
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.31 E-value=0.085 Score=50.48 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|.|+|+.|+||||||..++..+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 357899999999999999999987743
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.27 E-value=0.051 Score=49.58 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-.+++|+|..|.|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988654
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.25 E-value=0.099 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=22.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
-.++.|+|.+|+|||||+..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999887654
No 262
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.22 E-value=0.081 Score=44.49 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+-|+++|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 263
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.18 E-value=0.061 Score=49.27 Aligned_cols=37 Identities=30% Similarity=0.218 Sum_probs=26.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh-hhccccceEeee
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL-IYKEFEGNCFLG 242 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~ 242 (471)
.-.++.|.|.+|+|||+||.+++.. ....-..++++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3568999999999999999987654 333333444443
No 264
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.16 E-value=0.1 Score=51.32 Aligned_cols=50 Identities=34% Similarity=0.279 Sum_probs=34.4
Q ss_pred HHHHHHhhh-cCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 193 IEKIKSLLC-IGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 193 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
...|..+|. .+-..-.++.|.|.+|+||||||..++......=..++|++
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 445555554 22234568999999999999999998877544333566665
No 265
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.15 E-value=0.083 Score=48.32 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999988654
No 266
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.13 E-value=0.061 Score=49.95 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=26.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
-.+++|+|..|.|||||.+.++.-+... +.+++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 3589999999999999999988766554 555553
No 267
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.13 E-value=0.07 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998865
No 268
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.12 E-value=0.12 Score=49.22 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...+++++|.+|+||||++..++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999877654
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.04 E-value=0.06 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987644
No 270
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.02 E-value=0.16 Score=47.01 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...++.+.|.||+|||||+..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987655
No 271
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.13 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.101 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999988764
No 272
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.00 E-value=0.073 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-.+++|+|..|.|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998864
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.91 E-value=0.063 Score=50.67 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.+..-+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3589999999999999999987543
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.91 E-value=0.063 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987543
No 275
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.87 E-value=0.077 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998864
No 276
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.87 E-value=0.19 Score=48.90 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=24.5
Q ss_pred CCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 204 RPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 204 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.....+|+|+|.+|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999876654
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.84 E-value=0.082 Score=47.16 Aligned_cols=24 Identities=29% Similarity=0.106 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-+.|.|.|.+|+||||||.++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999875
No 278
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.82 E-value=0.077 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-.+++|+|..|.|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998864
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.78 E-value=0.067 Score=49.35 Aligned_cols=25 Identities=44% Similarity=0.553 Sum_probs=21.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987543
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.78 E-value=0.066 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.+..-+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999987643
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.74 E-value=0.068 Score=49.87 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987544
No 282
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.70 E-value=0.26 Score=49.77 Aligned_cols=54 Identities=17% Similarity=0.044 Sum_probs=34.9
Q ss_pred ccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhcc-ccceEeee
Q 041795 188 GLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNCFLG 242 (471)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 242 (471)
|...-...|..++ .+-..-.++.|.|.+|+||||||..++...... =..++|+.
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3333344555555 333445689999999999999999998876542 22345543
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.64 E-value=0.076 Score=49.08 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=25.7
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
.-.+++|+|..|.|||||.+.++.-+.. ..+.+++
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 61 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITI 61 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEE
Confidence 3468999999999999999998764432 2344444
No 284
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.63 E-value=0.096 Score=44.71 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.62 E-value=0.071 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.-.+++|+|..|.|||||.+.++.-+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999987543
No 286
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.61 E-value=0.097 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=22.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...|.|.|..|+||||+++.+.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999988764
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.59 E-value=0.073 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987543
No 288
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.58 E-value=0.14 Score=48.97 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+.-.+++|+|..|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999988765
No 289
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.56 E-value=0.073 Score=49.34 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=24.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||.+.++.-+.. ..+.+++
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i 68 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLI 68 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEE
Confidence 358999999999999999998764332 2344444
No 290
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.49 E-value=0.062 Score=48.66 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 291
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.49 E-value=0.11 Score=53.67 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=23.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+|.++|++|.||||+|+.+...+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999987653
No 292
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.44 E-value=0.088 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 293
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.43 E-value=0.077 Score=49.50 Aligned_cols=25 Identities=44% Similarity=0.519 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999987543
No 294
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.41 E-value=0.089 Score=52.44 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|.++|..+-..-.++.|+|.+|+|||||+..++-.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34555556433334569999999999999999987643
No 295
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.39 E-value=0.084 Score=46.02 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.0
Q ss_pred EEEEeccCcchhhhHHHHHHH
Q 041795 209 IVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~ 229 (471)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.33 E-value=0.079 Score=49.51 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=26.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
-.+++|+|..|.|||||.+.++.-+.. .+.+++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~ 79 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIG 79 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEEC
Confidence 458999999999999999998765532 4555553
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.29 E-value=0.08 Score=49.81 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=25.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||.+.++.-+.. ..+.+++
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~ 78 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLL 78 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEE
Confidence 468999999999999999998765432 2344444
No 298
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.29 E-value=0.1 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.++|.|++|+||||+|+.+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 299
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.25 E-value=0.23 Score=50.19 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=33.1
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 192 RIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 192 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
-...|.+++. +-..-.++.|.|.+|+||||||..++......=..++|+.
T Consensus 183 G~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 183 GFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3444555552 3334568999999999999999999887554322344443
No 300
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.23 E-value=0.26 Score=47.82 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
....+++|+|.+|+|||||.+.+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567999999999999999999986644
No 301
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.23 E-value=0.09 Score=47.29 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+|+|.|+.|+||||+|+.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999987754
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.22 E-value=0.082 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999987543
No 303
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.21 E-value=0.11 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999988754
No 304
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.20 E-value=0.1 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-.|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 305
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.16 E-value=0.18 Score=48.05 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=24.7
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...++|+|+|-||+||||+|..++..+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 346889999999999999999988876543
No 306
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.10 E-value=0.086 Score=49.85 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999987644
No 307
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.09 E-value=0.13 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 308
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.05 E-value=0.089 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-.+++|+|..|.|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988653
No 309
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.03 E-value=0.11 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998763
No 310
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.02 E-value=0.085 Score=48.14 Aligned_cols=25 Identities=32% Similarity=0.150 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...+|+|.|..|.|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999988764
No 311
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.90 E-value=0.19 Score=46.76 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=22.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
++|+|.|-||+||||+|..++..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578888999999999999998876543
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.86 E-value=0.12 Score=43.67 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.-|+++|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988754
No 313
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.74 E-value=0.17 Score=43.91 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999888654
No 314
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.74 E-value=0.12 Score=43.64 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 315
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.72 E-value=0.12 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEeccCcchhhhHHHHHHHhh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 316
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.72 E-value=0.13 Score=45.99 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=22.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.+|.|.|+.|+||||+|+.++..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 317
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.66 E-value=0.11 Score=49.72 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=21.8
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.-.+++|+|..|.|||||++.+..-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34689999999999999999886543
No 318
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.66 E-value=0.22 Score=52.02 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+|.|.|++|+||||+|+.+...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999988765
No 319
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.64 E-value=0.14 Score=52.08 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..+|.++|++|+||||+|+.+......
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 468899999999999999999887543
No 320
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.61 E-value=0.19 Score=44.18 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.++.|+|..|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997766553
No 321
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.60 E-value=0.13 Score=43.38 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999888754
No 322
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.53 E-value=0.13 Score=43.29 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=19.0
Q ss_pred EEEeccCcchhhhHHHHHHHh
Q 041795 210 VGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~ 230 (471)
|+++|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998764
No 323
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.53 E-value=0.13 Score=44.73 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.--|+|+|.+|+|||||.+.+.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45689999999999999977665543
No 324
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.50 E-value=0.13 Score=43.68 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+++|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999988764
No 325
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.47 E-value=0.075 Score=55.93 Aligned_cols=48 Identities=23% Similarity=0.145 Sum_probs=34.2
Q ss_pred CCccccchhHHHHHHhhhcCCC---------CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 184 DGLVGLNSRIEKIKSLLCIGRP---------DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
+.++|.+..++.+...|..+.. ...-|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 5689998876666554443310 01158899999999999999998764
No 326
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.44 E-value=0.13 Score=43.45 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|+++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 327
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.38 E-value=0.15 Score=43.66 Aligned_cols=25 Identities=40% Similarity=0.337 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 328
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.37 E-value=0.13 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
.+.+|+|..|.|||||..+++--+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999987643
No 329
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.36 E-value=0.12 Score=43.82 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.5
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
--|+++|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999998875
No 330
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.36 E-value=0.14 Score=43.45 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+++|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 331
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.35 E-value=0.13 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.34 E-value=0.15 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...++|+|..|.|||||++.+...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999887643
No 333
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.33 E-value=0.13 Score=43.65 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=19.1
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999998853
No 334
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.31 E-value=0.13 Score=55.87 Aligned_cols=51 Identities=29% Similarity=0.332 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHhhhc-----------CCCCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 184 DGLVGLNSRIEKIKSLLCI-----------GRPDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.++.|.++.+++|.+.+.. +....+-+.++|++|.|||.||+++++.....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 4567888888888776541 11235568899999999999999999875443
No 335
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.27 E-value=0.11 Score=48.54 Aligned_cols=33 Identities=45% Similarity=0.599 Sum_probs=25.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
-.+++|+|..|.|||||.+.++.-. -..+.+++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~ 62 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFI 62 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEE
Confidence 3589999999999999999987655 23444444
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.27 E-value=0.16 Score=45.37 Aligned_cols=25 Identities=24% Similarity=0.101 Sum_probs=21.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|.|+|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998875
No 337
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.23 E-value=0.14 Score=49.22 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..++++|.|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999988653
No 338
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.23 E-value=0.22 Score=51.80 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=30.8
Q ss_pred ccchhHHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 188 GLNSRIEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
.|.+..+.+.+..........+|.+.|++|+||||+|+.+...+.
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 344444455554422223357899999999999999999988754
No 339
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.23 E-value=0.11 Score=51.82 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...+++|+|..|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 340
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.22 E-value=0.13 Score=44.21 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988764
No 341
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.20 E-value=0.2 Score=49.32 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=26.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhccccceE
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNC 239 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 239 (471)
.-.+++|+|..|.|||||.+.+...+.....+.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 3468999999999999999999876654323333
No 342
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.17 E-value=0.083 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
....|+|.|..|+||||+|+.+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999887665
No 343
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.16 E-value=0.14 Score=43.88 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999988764
No 344
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.14 E-value=0.25 Score=49.56 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=24.7
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
...+++++|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999998876544
No 345
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.14 E-value=0.14 Score=44.65 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347889999999999999887654
No 346
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.12 E-value=0.18 Score=42.97 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999988653
No 347
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.09 E-value=0.12 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998753
No 348
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.07 E-value=0.15 Score=43.13 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+++|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998763
No 349
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.06 E-value=0.12 Score=43.61 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.4
Q ss_pred EEEEeccCcchhhhHHHHHHH
Q 041795 209 IVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~ 229 (471)
-|+++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999988753
No 350
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.04 E-value=0.23 Score=45.17 Aligned_cols=25 Identities=20% Similarity=0.020 Sum_probs=21.0
Q ss_pred EEEEeccCcchhhhHHHHHHHhhhc
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.|.+.|.||+||||+|..++.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4778999999999999988887543
No 351
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.04 E-value=0.25 Score=46.60 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=22.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
++|+|.|-||+||||+|..++..+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 67888999999999999998887654
No 352
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.02 E-value=0.15 Score=43.72 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999988754
No 353
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.00 E-value=0.16 Score=48.83 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 194 EKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 194 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..|..+|..+-..-.++.|+|.+|+||||||..++..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555423234579999999999999999998865
No 354
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.00 E-value=0.15 Score=43.62 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998754
No 355
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.94 E-value=0.24 Score=46.00 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.7
Q ss_pred HhhhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 198 SLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 198 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+.+.........|+++|.+|+|||||...+...
T Consensus 27 ~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 27 GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 333333334567899999999999999998764
No 356
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.94 E-value=0.15 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999888764
No 357
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.93 E-value=0.15 Score=43.52 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 567899999999999999998764
No 358
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.87 E-value=0.15 Score=43.21 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999988753
No 359
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.87 E-value=0.14 Score=50.15 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4589999999999999999998754
No 360
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.82 E-value=0.22 Score=44.60 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=25.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEFEG 237 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 237 (471)
.-|+|-|.-|+||||+++.+.+.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 458899999999999999999987655543
No 361
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.82 E-value=0.15 Score=44.44 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4668899999999999999988753
No 362
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.75 E-value=0.21 Score=45.13 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...|.|.|+.|+||||+++.+.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999887654
No 363
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.72 E-value=0.15 Score=49.94 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.+..-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4689999999999999999987643
No 364
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.70 E-value=0.16 Score=43.76 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998764
No 365
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.68 E-value=0.22 Score=42.61 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.6
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999998765
No 366
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.68 E-value=0.17 Score=42.99 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998754
No 367
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.64 E-value=0.16 Score=43.95 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.61 E-value=0.16 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..|+++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 369
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.60 E-value=0.17 Score=43.79 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999998764
No 370
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.56 E-value=0.16 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 4589999999999999999998654
No 371
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.54 E-value=0.17 Score=44.19 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988764
No 372
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.51 E-value=0.27 Score=45.84 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=24.0
Q ss_pred hhcCCCCceEEEEeccCcchhhhHHHHHHHh
Q 041795 200 LCIGRPDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 200 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+.........|+++|.+|+|||||...++..
T Consensus 32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3333334568899999999999999998864
No 373
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.51 E-value=0.16 Score=49.61 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|+|||||.+.++.-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999988654
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.50 E-value=0.17 Score=43.56 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=19.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+++|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999888754
No 375
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.47 E-value=0.13 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999987643
No 376
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.40 E-value=0.18 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=19.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999888754
No 377
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.39 E-value=0.18 Score=43.46 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 457899999999999999988754
No 378
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.38 E-value=0.3 Score=43.09 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=22.1
Q ss_pred eEEEEe-ccCcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIW-GMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~ 234 (471)
++|+|+ +-||+||||+|..++..+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~ 29 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS 29 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 578888 469999999999998876553
No 379
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.36 E-value=0.15 Score=49.88 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999998644
No 380
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.34 E-value=0.17 Score=43.74 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998764
No 381
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.34 E-value=0.2 Score=43.56 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999988764
No 382
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.33 E-value=0.21 Score=48.76 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+..+|+|+|.+|+|||||...+......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999998876443
No 383
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.33 E-value=0.14 Score=44.34 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.3
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988754
No 384
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.30 E-value=0.17 Score=49.91 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4589999999999999999998644
No 385
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.28 E-value=0.18 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 386
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.23 E-value=0.19 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.1
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...-|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999988653
No 387
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.21 E-value=0.18 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999988764
No 388
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.19 E-value=0.14 Score=45.21 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=19.7
Q ss_pred CceEEEEeccCcchhhhHHHHHH
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~ 228 (471)
...-|+|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999998864
No 389
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.19 E-value=0.18 Score=49.44 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4589999999999999999998654
No 390
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.18 E-value=0.19 Score=44.23 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=19.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999988864
No 391
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.14 E-value=0.19 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.131 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+++|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999988764
No 392
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.14 E-value=0.26 Score=44.86 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999987654
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.14 E-value=0.18 Score=43.41 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999988753
No 394
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.10 E-value=0.24 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|.|.|++|+||||+|+.+...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998875
No 395
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.10 E-value=0.18 Score=49.44 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 396
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.09 E-value=0.18 Score=43.05 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.9
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988753
No 397
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.08 E-value=0.35 Score=44.02 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=23.9
Q ss_pred CceEEEEec-cCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWG-MGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~ 234 (471)
..++|+|+| -||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 357888886 59999999999999887664
No 398
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.06 E-value=0.21 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+++|.+|+|||||...+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888754
No 399
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.05 E-value=0.19 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 446889999999999999998764
No 400
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.03 E-value=0.19 Score=44.19 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 401
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.97 E-value=0.19 Score=49.56 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=21.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|+|||||.+.++.-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3589999999999999999988653
No 402
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.96 E-value=0.28 Score=46.82 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCCCceEEEEeccCcchhhhHHHHHH
Q 041795 193 IEKIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIF 228 (471)
Q Consensus 193 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 228 (471)
+++|.+.+. -.+++|+|..|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 455555553 2488999999999999999987
No 403
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.88 E-value=0.36 Score=43.88 Aligned_cols=28 Identities=21% Similarity=-0.151 Sum_probs=23.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
-.++.|+|..|+||||++..+.++...+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 4688999999999999999988876544
No 404
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.84 E-value=0.19 Score=44.77 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998764
No 405
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.83 E-value=0.21 Score=45.54 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...|.|.|+.|+||||+++.+.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987654
No 406
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.83 E-value=0.19 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
-.+++|+|..|.|||||.+.++.-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4689999999999999999988643
No 407
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.82 E-value=0.19 Score=44.32 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457899999999999999998864
No 408
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.81 E-value=0.2 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=20.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.80 E-value=0.21 Score=43.56 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998764
No 410
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.79 E-value=0.19 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999988764
No 411
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.77 E-value=0.25 Score=43.51 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999998764
No 412
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.76 E-value=0.16 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.3
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..|+++|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998864
No 413
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.74 E-value=0.21 Score=43.69 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 414
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.72 E-value=0.37 Score=44.67 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCceEEEEec-cCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIWG-MGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~ 232 (471)
...++|+|+| -||+||||+|..++..+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3467888866 699999999999988876
No 415
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.71 E-value=0.2 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 416
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.59 E-value=0.25 Score=42.95 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
+-|.|.|.+|+||||||.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57899999999999999998774
No 417
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.58 E-value=0.22 Score=43.44 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 557899999999999999998764
No 418
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.57 E-value=0.37 Score=43.86 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=21.2
Q ss_pred EEEeccCcchhhhHHHHHHHhhhcc
Q 041795 210 VGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 210 v~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
|+|.|-||+||||+|..++..+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC
Confidence 5668999999999999998876554
No 419
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.56 E-value=0.22 Score=43.34 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998764
No 420
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.56 E-value=0.22 Score=43.47 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446889999999999999988764
No 421
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.50 E-value=0.32 Score=42.34 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998765
No 422
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.49 E-value=0.22 Score=43.81 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.0
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999988754
No 423
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=88.48 E-value=0.25 Score=44.95 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=23.3
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46999999999999999999998764
No 424
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.45 E-value=0.67 Score=43.36 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=32.8
Q ss_pred hhHHHHHHhhhc--CCCCceEEEEecc-CcchhhhHHHHHHHhhhccccceEee
Q 041795 191 SRIEKIKSLLCI--GRPDFRIVGIWGM-GGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 191 ~~~~~l~~~L~~--~~~~~~vv~I~G~-gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
+.++.|...|.. .....++|.|.|. ||+||||+|..++..+...=..++.+
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 344445444432 2345689999975 99999999999988766532233433
No 425
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.45 E-value=0.2 Score=44.13 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 426
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.42 E-value=0.21 Score=43.64 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456899999999999999998763
No 427
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.37 E-value=0.23 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999988754
No 428
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.34 E-value=0.24 Score=45.50 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...|.|.|+.|+||||+++.+.+.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999887644
No 429
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.29 E-value=0.23 Score=43.14 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999998764
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.27 E-value=0.19 Score=44.22 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=19.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|.++|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999998866553
No 431
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.16 E-value=0.15 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHH
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
....|+|+|.+|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999987653
No 432
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.15 E-value=0.32 Score=43.42 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
...+|+|+|++|+||+|+|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45699999999999999998886644
No 433
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.10 E-value=0.2 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=20.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999888754
No 434
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.09 E-value=0.43 Score=46.90 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=24.9
Q ss_pred CCceEEEEec-cCcchhhhHHHHHHHhhhcc
Q 041795 205 PDFRIVGIWG-MGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 205 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~ 234 (471)
...++|+|+| -||+||||+|..++..+...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~ 171 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM 171 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC
Confidence 4578999986 89999999999988876554
No 435
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=88.07 E-value=0.25 Score=47.01 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 34678999999999999999988753
No 436
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=88.07 E-value=0.43 Score=43.21 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=22.1
Q ss_pred eEEEEec-cCcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWG-MGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G-~gGiGKTtLA~~v~~~~~~~ 234 (471)
++|+|+| -||+||||+|..++..+...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~ 30 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDR 30 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence 5777776 69999999999998887654
No 437
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.05 E-value=0.66 Score=46.37 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=24.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
.-.+++|+|..|.|||||.+.+...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 35689999999999999999998876543
No 438
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.03 E-value=0.19 Score=47.90 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEEeccCcchhhhHHHHHHH
Q 041795 209 IVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~ 229 (471)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999875
No 439
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.01 E-value=0.24 Score=48.37 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
-.+++|+|..|+|||||.+.+......
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999987654
No 440
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.99 E-value=0.22 Score=49.32 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=26.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhccccceEeee
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKEFEGNCFLG 242 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 242 (471)
-..++|+|..|+|||||.+.++.-.. ..+.+++.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~ 80 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQID 80 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEES
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEEC
Confidence 46899999999999999999986443 34556554
No 441
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.92 E-value=0.28 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.7
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4568899999999999999988764
No 442
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=87.85 E-value=0.24 Score=44.53 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=19.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999988763
No 443
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=87.81 E-value=0.69 Score=43.96 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCceEEEEecc-CcchhhhHHHHHHHhhhcc
Q 041795 204 RPDFRIVGIWGM-GGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 204 ~~~~~vv~I~G~-gGiGKTtLA~~v~~~~~~~ 234 (471)
....++|.|.|. ||+||||+|..++..+...
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~ 132 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQS 132 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhC
Confidence 345689999985 8999999999998876654
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.69 E-value=0.17 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=10.5
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999887653
No 445
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.68 E-value=0.25 Score=43.10 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=21.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+++|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998865
No 446
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.67 E-value=0.4 Score=45.29 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=26.8
Q ss_pred hHHHHHHhhhcCCCCceEEEEec---cCcchhhhHHHHHHHhhhc
Q 041795 192 RIEKIKSLLCIGRPDFRIVGIWG---MGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 192 ~~~~l~~~L~~~~~~~~vv~I~G---~gGiGKTtLA~~v~~~~~~ 233 (471)
.+.++.+.+.. ..++|+|++ -||+||||+|..++..+..
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~ 63 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDK 63 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHh
Confidence 34555555542 235666665 8999999999999877654
No 447
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.67 E-value=0.21 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 557899999999999999988643
No 448
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.64 E-value=0.25 Score=43.61 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 449
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.63 E-value=0.23 Score=43.13 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=21.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998753
No 450
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.61 E-value=0.27 Score=44.43 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.0
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-|.|+|.+|+|||+|...+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
No 451
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.61 E-value=0.2 Score=49.16 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=22.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|+|..|.|||||++.+...+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5899999999999999999987554
No 452
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.58 E-value=0.29 Score=42.68 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.5
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999988653
No 453
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.58 E-value=0.25 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.2
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999988764
No 454
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=87.56 E-value=0.29 Score=46.67 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999998764
No 455
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.56 E-value=0.25 Score=43.80 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999888754
No 456
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.56 E-value=0.27 Score=43.50 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 457
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.54 E-value=0.21 Score=43.12 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 458
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.54 E-value=0.5 Score=48.46 Aligned_cols=38 Identities=5% Similarity=-0.227 Sum_probs=28.6
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhcc-ccceEeee
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE-FEGNCFLG 242 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 242 (471)
..-.++.|.|.+|+||||||..++...... =..++|+.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 345689999999999999999998876543 22455554
No 459
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.53 E-value=0.29 Score=44.15 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.0
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
..|.+.|..|+||||+++.+.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999987654
No 460
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.48 E-value=0.28 Score=44.34 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999988654
No 461
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.47 E-value=0.18 Score=43.40 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=20.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHH
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
....|+|+|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999988763
No 462
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.47 E-value=0.23 Score=43.48 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=19.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..-|+|+|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999998854
No 463
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.45 E-value=0.48 Score=43.50 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=21.9
Q ss_pred eEEEEec-cCcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWG-MGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G-~gGiGKTtLA~~v~~~~~~~ 234 (471)
++|+|+| -||+||||+|..++..+...
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~ 30 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQK 30 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC
Confidence 5778866 59999999999998876643
No 464
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=87.44 E-value=0.26 Score=43.52 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=20.8
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 557899999999999999988654
No 465
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.37 E-value=0.22 Score=50.60 Aligned_cols=26 Identities=31% Similarity=0.240 Sum_probs=22.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
-.+++|+|..|+|||||++.++.-..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCccc
Confidence 45899999999999999999987643
No 466
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.36 E-value=0.27 Score=43.38 Aligned_cols=24 Identities=29% Similarity=0.178 Sum_probs=20.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999988764
No 467
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=87.35 E-value=0.26 Score=42.64 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.4
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...-|+++|.+|+|||||...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988754
No 468
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=87.29 E-value=0.31 Score=43.83 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.-.|||.|.-|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998765
No 469
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.23 E-value=0.29 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|.|+|.+|+|||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998764
No 470
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.20 E-value=0.26 Score=44.04 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=20.1
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999988753
No 471
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.19 E-value=0.3 Score=45.60 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.9
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 472
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.03 E-value=0.27 Score=42.95 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHH
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..-|+|+|.+|+|||||...+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998764
No 473
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.91 E-value=0.3 Score=47.74 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.+++|+|.+|+|||||...+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999988754
No 474
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.85 E-value=0.4 Score=42.52 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=17.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
..|-|++-.|.||||+|-...-+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR 51 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR 51 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45666666779999999877665
No 475
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.85 E-value=0.36 Score=43.34 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=22.2
Q ss_pred eEEEEecc-CcchhhhHHHHHHHhhhcc
Q 041795 208 RIVGIWGM-GGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 208 ~vv~I~G~-gGiGKTtLA~~v~~~~~~~ 234 (471)
++|.|.|. ||+||||+|..++..+...
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57888885 8999999999998876544
No 476
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=86.85 E-value=0.65 Score=45.99 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=23.3
Q ss_pred CCceEEEEe-ccCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIW-GMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~-G~gGiGKTtLA~~v~~~~~ 232 (471)
...++|+|+ |-||+||||+|..++..+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 447788888 5699999999999988765
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.84 E-value=0.39 Score=49.63 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=19.7
Q ss_pred CceEEEEeccCcchhhhHHHHH
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAI 227 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v 227 (471)
.-.+++|+|..|.|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3469999999999999999995
No 478
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=86.75 E-value=0.85 Score=44.37 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
+..+++.+.|-||+||||+|..++..+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 345566777899999999999988776544
No 479
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.68 E-value=0.56 Score=41.92 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEEEe-ccCcchhhhHHHHHHHhhhcc
Q 041795 209 IVGIW-GMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 209 vv~I~-G~gGiGKTtLA~~v~~~~~~~ 234 (471)
+|+|+ +-||+||||+|..++..+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~ 28 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ 28 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc
Confidence 56665 579999999999998887654
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=86.64 E-value=0.36 Score=43.67 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.7
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
...|.+-|+.|+||||+++.+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 358999999999999999999987654
No 481
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=86.59 E-value=0.32 Score=43.45 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHh
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568899999999999999887653
No 482
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.59 E-value=0.29 Score=48.95 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEeccCcchhhhHHHHHHHh
Q 041795 209 IVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 209 vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-++|+|..|+|||||.+.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999998764
No 483
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=86.55 E-value=0.58 Score=47.38 Aligned_cols=26 Identities=38% Similarity=0.440 Sum_probs=22.5
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
+.+.|.|.+|+||||++..+...+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999998877543
No 484
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=86.52 E-value=0.4 Score=41.52 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.2
Q ss_pred CceEEEEeccCcchhhhHHHHHHH
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
..--|+++|.+|+|||||...+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 455789999999999999988753
No 485
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.48 E-value=0.43 Score=47.02 Aligned_cols=28 Identities=25% Similarity=-0.025 Sum_probs=24.0
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
-..++|+|.+|+|||||++.+.+.+...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 4589999999999999999998876543
No 486
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.32 E-value=0.41 Score=40.41 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.2
Q ss_pred ceEEEEeccCcchhhhHHHHHHHhh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNLI 231 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~~ 231 (471)
..+.+|+|..|.|||||..+++--+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999887543
No 487
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=86.26 E-value=0.4 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.4
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.+|+|.|+.|+||||+|+.+...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988664
No 488
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=86.22 E-value=0.4 Score=48.50 Aligned_cols=28 Identities=32% Similarity=0.554 Sum_probs=23.6
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhhccc
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIYKEF 235 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 235 (471)
..++|+|.+|+|||||+..+......++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 3689999999999999999988765543
No 489
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.14 E-value=0.68 Score=45.05 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCceEEEEeccCcchhhhHHHHHHHhhh
Q 041795 205 PDFRIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 205 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
...+++.+.|-||+||||+|..++..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3468899999999999999999887766
No 490
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.13 E-value=0.34 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=20.6
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988753
No 491
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.11 E-value=0.61 Score=43.20 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.0
Q ss_pred ceEEEEec-cCcchhhhHHHHHHHhhhcc
Q 041795 207 FRIVGIWG-MGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 207 ~~vv~I~G-~gGiGKTtLA~~v~~~~~~~ 234 (471)
.++|+|+| -||+||||+|..++..+...
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~ 46 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQ 46 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHC
Confidence 45777765 69999999999998876543
No 492
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.11 E-value=0.33 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
-.+++|+|..|.|||||++.++..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998764
No 493
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=86.03 E-value=1.1 Score=42.28 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=33.0
Q ss_pred hhHHHHHHhhh--cCCCCceEEEEec-cCcchhhhHHHHHHHhhhccccceEee
Q 041795 191 SRIEKIKSLLC--IGRPDFRIVGIWG-MGGTGKTTLAGAIFNLIYKEFEGNCFL 241 (471)
Q Consensus 191 ~~~~~l~~~L~--~~~~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~f~~~~~~ 241 (471)
+.+..|...|. ......++|.|+| -||+||||+|..++..+...=..++.+
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 34445544443 2234567888888 489999999999988776542234444
No 494
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.96 E-value=0.21 Score=48.33 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.8
Q ss_pred eEEEEeccCcchhhhHHHHHHHhhh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNLIY 232 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~~~ 232 (471)
..++|+|..|.|||||.+.+...+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4799999999999999999887653
No 495
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=85.95 E-value=0.35 Score=48.74 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=23.9
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.-..++|+|..|+|||||.+.++.....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3468999999999999999999887543
No 496
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=85.94 E-value=0.24 Score=47.39 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.7
Q ss_pred eEEEEeccCcchhhhHHHHHHH
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFN 229 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~ 229 (471)
.+++|+|.+|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4899999999999999998754
No 497
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=85.94 E-value=0.7 Score=44.69 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=24.3
Q ss_pred CceEEEEeccCcchhhhHHHHHHHhhhcc
Q 041795 206 DFRIVGIWGMGGTGKTTLAGAIFNLIYKE 234 (471)
Q Consensus 206 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 234 (471)
..+++.+.|-||+||||+|..++..+...
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhC
Confidence 45788889999999999999998876554
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.90 E-value=0.39 Score=49.62 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=28.1
Q ss_pred HHHHhhhcCCCCceEEEEeccCcchhhhHHHHHHHhhhc
Q 041795 195 KIKSLLCIGRPDFRIVGIWGMGGTGKTTLAGAIFNLIYK 233 (471)
Q Consensus 195 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 233 (471)
.+...|..+-..-.+++|.|.+|+|||||++.++.....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344444322233569999999999999999999876543
No 499
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=85.90 E-value=0.49 Score=45.03 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEEeccCcchhhhHHHHHHHh
Q 041795 208 RIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 208 ~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.+++|+|.+|+|||||.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 48899999999999999998653
No 500
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.89 E-value=0.27 Score=42.79 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.4
Q ss_pred ceEEEEeccCcchhhhHHHHHHHh
Q 041795 207 FRIVGIWGMGGTGKTTLAGAIFNL 230 (471)
Q Consensus 207 ~~vv~I~G~gGiGKTtLA~~v~~~ 230 (471)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999887654
Done!