BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041798
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/411 (53%), Positives = 299/411 (72%), Gaps = 3/411 (0%)
Query: 94 KDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEV 152
+DVP A++ LFI+KL CCV+FDF +DP +LK K++KR L E+V+Y++ + E
Sbjct: 31 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 90
Query: 153 AMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASP 212
E+ M AVN+FRT S S+ G + +D HLQ+VYE LRF+ SP
Sbjct: 91 IYPEVVHMFAVNMFRTLPPS-SNPTGAE-FDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIF 272
+ +AK+YID FVL+LL+LFDSED RER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208
Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLS 332
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +S+YH QL+
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268
Query: 333 YCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLF 392
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ + +EF + M PLF
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 328
Query: 393 RQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQS 452
RQ+ +C++S HFQVAERAL+ WNN++I +LI+ N ILPI+FP+L RN++ HWN+ +
Sbjct: 329 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 388
Query: 453 LTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAAS 503
L N K+F + +Q LFD+C +F+ +++KEK ++RE W ++E+LA +
Sbjct: 389 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKA 439
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/408 (53%), Positives = 297/408 (72%), Gaps = 3/408 (0%)
Query: 94 KDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEV 152
+DVP A++ LFI+KL CCV+FDF +DP +LK K++KR L E+V+Y++ + E
Sbjct: 2 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61
Query: 153 AMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASP 212
E+ M AVN+FRT S S+ G + +D HLQ+VYE LRF+ SP
Sbjct: 62 IYPEVVHMFAVNMFRTLPPS-SNPTGAE-FDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIF 272
+ +AK+YID FVL+LL+LFDSED RER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179
Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLS 332
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +S+YH QL+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239
Query: 333 YCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLF 392
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ + +EF + M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299
Query: 393 RQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQS 452
RQ+ +C++S HFQVAERAL+ WNN++I +LI+ N ILPI+FP+L RN++ HWN+ +
Sbjct: 300 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 359
Query: 453 LTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDL 500
L N K+F + +Q LFD+C +F+ +++KEK ++RE W ++E+L
Sbjct: 360 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 407
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/405 (53%), Positives = 294/405 (72%), Gaps = 3/405 (0%)
Query: 97 PSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQ 155
P A++ LFI+KL CCV+FDF +DP +LK K++KR L E+V+Y++ + E
Sbjct: 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYP 60
Query: 156 EITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASPETD 215
E+ M AVN+FRT S S+ G + +D HLQ+VYE LRF+ SP+
Sbjct: 61 EVVHMFAVNMFRTLPPS-SNPTGAE-FDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQ 118
Query: 216 AKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRF 275
+AK+YID FVL+LL+LFDSED RER++LKT LHRIYGKF+ R +IRK INNIFYRF
Sbjct: 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 178
Query: 276 IFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCI 335
I+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +S+YH QL+YC+
Sbjct: 179 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238
Query: 336 TQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQI 395
QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ + +EF + M PLFRQ+
Sbjct: 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQL 298
Query: 396 GRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTL 455
+C++S HFQVAERAL+ WNN++I +LI+ N ILPI+FP+L RN++ HWN+ + L
Sbjct: 299 AKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 358
Query: 456 NVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDL 500
N K+F + +Q LFD+C +F+ +++KEK ++RE W ++E+L
Sbjct: 359 NALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 403
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/375 (54%), Positives = 268/375 (71%), Gaps = 3/375 (0%)
Query: 104 LFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVA 162
LFI+KL CCV+FDF +DP +LK K++KR L E V+Y++ + E E+ A
Sbjct: 4 LFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVHXFA 63
Query: 163 VNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASPETDAKLAKRY 222
VN FRT S S+ G + +D HLQ+VYE LRF+ SP+ +AK+Y
Sbjct: 64 VNXFRTLPPS-SNPTGAE-FDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKY 121
Query: 223 IDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKH 282
ID FVL+LL+LFDSED RER++LKT LHRIYGKF+ R +IRK INNIFYRFI+ETE H
Sbjct: 122 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHH 181
Query: 283 NGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKD 342
NGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +S+YH QL+YC+ QF+EKD
Sbjct: 182 NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD 241
Query: 343 FKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSS 402
L + V+ LLKYWP T+S KEV FL ELEE+L+ + +EF + PLFRQ+ +C++S
Sbjct: 242 STLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCVSSP 301
Query: 403 HFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFS 462
HFQVAERAL+ WNN++I +LI+ N ILPI FP+L RN++ HWN+ + L N K+F
Sbjct: 302 HFQVAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNKTIHGLIYNALKLFX 361
Query: 463 DADQALFDECLARFQ 477
+ +Q LFD+C +F+
Sbjct: 362 EXNQKLFDDCTQQFK 376
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/351 (56%), Positives = 260/351 (74%), Gaps = 3/351 (0%)
Query: 94 KDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEV 152
+DVP A++ LFI+KL CCV+FDF +DP +LK K++KR L E+V+Y++ + E
Sbjct: 43 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 102
Query: 153 AMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASP 212
E+ M AVN+FRT S S+ G + +D HLQ+VYE LRF+ SP
Sbjct: 103 IYPEVVHMFAVNMFRTLPPS-SNPTGAE-FDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 160
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIF 272
+ +AK+YID FVL+LL+LFDSED RER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 161 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 220
Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLS 332
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +S+YH QL+
Sbjct: 221 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 280
Query: 333 YCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLF 392
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ + +EF + M PLF
Sbjct: 281 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 340
Query: 393 RQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTR 443
RQ+ +C++S HFQVAERAL+ WNN++I +LI+ N ILPI+FP+L RN++
Sbjct: 341 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 391
>pdb|1MIO|B Chain B, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|D Chain D, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 458
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHR---PFIR 265
E DA LA+ I+ S V D FD + E + ++ YGKF+ PF+R
Sbjct: 353 EIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLISNTYGKFIAREENIPFVR 408
>pdb|4B4T|S Chain S, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 523
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 411 LFLWNNDHIRNLINLNRKVILP 432
LFLW++ + L+ NRKV++P
Sbjct: 144 LFLWDSKELEQLVEFNRKVVIP 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,248,363
Number of Sequences: 62578
Number of extensions: 489036
Number of successful extensions: 1024
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 9
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)