Query 041798
Match_columns 534
No_of_seqs 189 out of 323
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 10:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085 Serine/threonine prote 100.0 4E-156 1E-160 1200.1 39.1 418 84-505 39-456 (457)
2 PF01603 B56: Protein phosphat 100.0 4E-125 9E-130 1001.5 30.9 407 89-502 1-409 (409)
3 PLN00122 serine/threonine prot 100.0 9.3E-37 2E-41 288.2 13.5 134 340-506 35-168 (170)
4 PLN00122 serine/threonine prot 97.4 0.00097 2.1E-08 64.0 9.2 32 78-109 36-67 (170)
5 PF01602 Adaptin_N: Adaptin N 92.3 1.6 3.6E-05 47.5 12.6 175 228-415 341-520 (526)
6 PF05918 API5: Apoptosis inhib 85.8 19 0.00041 41.0 14.8 88 327-414 241-340 (556)
7 KOG1060 Vesicle coat complex A 85.3 10 0.00023 44.4 12.5 150 305-475 319-470 (968)
8 PF12348 CLASP_N: CLASP N term 78.4 20 0.00044 34.8 10.5 104 360-466 19-126 (228)
9 PF14500 MMS19_N: Dos2-interac 74.4 57 0.0012 33.5 12.7 171 231-410 4-209 (262)
10 KOG0213 Splicing factor 3b, su 65.9 84 0.0018 37.3 12.6 289 158-473 569-904 (1172)
11 KOG2137 Protein kinase [Signal 65.5 1.9E+02 0.004 34.1 15.3 151 346-508 350-501 (700)
12 PF04388 Hamartin: Hamartin pr 65.2 1.2E+02 0.0027 35.3 14.3 57 227-293 5-61 (668)
13 PF08767 CRM1_C: CRM1 C termin 61.9 2.1E+02 0.0046 30.1 15.9 75 376-467 155-229 (319)
14 smart00582 RPR domain present 59.1 18 0.00038 32.0 4.8 84 334-417 18-108 (121)
15 cd03562 CID CID (CTD-Interacti 58.8 43 0.00094 29.3 7.3 89 329-417 18-109 (114)
16 cd07920 Pumilio Pumilio-family 57.5 2.3E+02 0.0049 29.0 15.2 70 342-413 141-211 (322)
17 PF01417 ENTH: ENTH domain; I 55.1 49 0.0011 29.7 7.1 91 372-463 24-121 (125)
18 PF01602 Adaptin_N: Adaptin N 54.8 3.2E+02 0.0069 29.8 18.6 180 199-397 246-425 (526)
19 PF12460 MMS19_C: RNAPII trans 53.2 3.3E+02 0.0071 29.5 22.1 183 226-414 189-389 (415)
20 COG5215 KAP95 Karyopherin (imp 52.7 50 0.0011 37.9 7.9 105 389-503 262-389 (858)
21 PF12348 CLASP_N: CLASP N term 49.2 2.5E+02 0.0055 27.1 14.3 193 236-433 17-218 (228)
22 cd03572 ENTH_epsin_related ENT 48.8 1.7E+02 0.0037 26.9 9.6 89 368-463 21-119 (122)
23 PF10508 Proteasom_PSMB: Prote 46.9 1.4E+02 0.003 33.5 10.4 106 389-502 118-231 (503)
24 KOG2175 Protein predicted to b 46.4 2.4E+02 0.0051 31.6 11.8 58 409-474 195-253 (458)
25 PF08389 Xpo1: Exportin 1-like 43.1 85 0.0018 27.8 6.7 101 345-461 8-113 (148)
26 PF12783 Sec7_N: Guanine nucle 41.4 2.3E+02 0.0051 26.4 9.7 112 363-478 37-160 (168)
27 COG5656 SXM1 Importin, protein 40.9 3E+02 0.0064 32.9 11.8 119 231-354 379-505 (970)
28 KOG1248 Uncharacterized conser 39.4 8.7E+02 0.019 30.5 18.8 250 201-474 94-383 (1176)
29 PF04826 Arm_2: Armadillo-like 37.3 4.7E+02 0.01 26.8 13.9 56 220-276 6-63 (254)
30 PF12783 Sec7_N: Guanine nucle 36.8 1E+02 0.0023 28.8 6.5 59 285-344 90-149 (168)
31 cd03571 ENTH_epsin ENTH domain 36.8 1.1E+02 0.0024 28.0 6.4 89 372-463 22-118 (123)
32 cd03567 VHS_GGA VHS domain fam 33.8 3.8E+02 0.0083 24.9 9.6 79 336-414 26-111 (139)
33 PTZ00429 beta-adaptin; Provisi 33.5 9E+02 0.019 28.9 18.7 136 266-414 404-541 (746)
34 PF03378 CAS_CSE1: CAS/CSE pro 32.7 4.1E+02 0.0088 29.4 11.1 72 329-400 177-252 (435)
35 cd07920 Pumilio Pumilio-family 31.0 5.8E+02 0.013 25.9 12.4 21 223-246 92-112 (322)
36 smart00324 RhoGAP GTPase-activ 30.9 2.2E+02 0.0048 26.4 7.7 90 198-296 56-146 (174)
37 PF03378 CAS_CSE1: CAS/CSE pro 30.1 83 0.0018 34.8 5.2 167 133-319 116-303 (435)
38 PF04499 SAPS: SIT4 phosphatas 28.3 5.1E+02 0.011 29.1 11.0 99 199-297 33-148 (475)
39 PF12717 Cnd1: non-SMC mitotic 27.2 4.6E+02 0.0099 24.8 9.2 87 384-476 19-106 (178)
40 PF08167 RIX1: rRNA processing 26.7 2.4E+02 0.0051 26.7 7.1 50 226-275 67-117 (165)
41 COG5215 KAP95 Karyopherin (imp 26.6 8.6E+02 0.019 28.5 12.2 126 277-404 561-694 (858)
42 PF14676 FANCI_S2: FANCI solen 26.5 2.9E+02 0.0062 26.4 7.6 25 298-322 102-126 (158)
43 cd08324 CARD_NOD1_CARD4 Caspas 26.4 52 0.0011 28.5 2.3 38 227-264 47-84 (85)
44 KOG2171 Karyopherin (importin) 26.4 1.3E+03 0.029 28.7 18.4 247 216-475 105-389 (1075)
45 PF12755 Vac14_Fab1_bd: Vacuol 25.0 3.3E+02 0.0072 23.7 7.1 72 384-461 21-95 (97)
46 PF12726 SEN1_N: SEN1 N termin 25.0 3.5E+02 0.0077 31.7 9.5 101 200-304 500-611 (727)
47 cd03561 VHS VHS domain family; 24.8 5.2E+02 0.011 23.4 9.4 81 334-414 23-107 (133)
48 PF08578 DUF1765: Protein of u 24.7 3.6E+02 0.0078 24.4 7.6 104 350-457 6-120 (126)
49 PF12719 Cnd3: Nuclear condens 24.4 5.8E+02 0.013 26.2 10.1 174 289-466 4-210 (298)
50 PF06757 Ins_allergen_rp: Inse 23.6 5.2E+02 0.011 24.7 8.9 57 367-425 102-164 (179)
51 KOG2099 Glycogen phosphorylase 23.4 2.3E+02 0.0051 32.8 7.1 37 342-386 498-534 (843)
52 KOG1824 TATA-binding protein-i 23.1 9.3E+02 0.02 29.9 12.1 130 349-480 477-620 (1233)
53 KOG1991 Nuclear transport rece 23.1 1.5E+03 0.032 28.0 20.7 220 196-419 410-671 (1010)
54 KOG1241 Karyopherin (importin) 22.5 2E+02 0.0044 34.1 6.6 69 390-460 259-352 (859)
55 cd00020 ARM Armadillo/beta-cat 21.9 3.6E+02 0.0078 22.3 6.7 65 390-461 49-118 (120)
56 cd00020 ARM Armadillo/beta-cat 21.6 2E+02 0.0044 23.8 5.1 42 216-257 39-80 (120)
57 PF12830 Nipped-B_C: Sister ch 20.9 6.1E+02 0.013 24.4 8.8 77 387-474 5-85 (187)
58 KOG1967 DNA repair/transcripti 20.8 8E+02 0.017 30.1 11.0 143 349-497 868-1025(1030)
59 KOG2188 Predicted RNA-binding 20.8 1.4E+03 0.03 26.8 14.3 198 232-447 321-554 (650)
60 PF12290 DUF3802: Protein of u 20.4 2.2E+02 0.0047 26.0 5.1 52 326-377 38-104 (113)
No 1
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-156 Score=1200.10 Aligned_cols=418 Identities=69% Similarity=1.139 Sum_probs=413.0
Q ss_pred ccccccCCCCCCCCCCCcHHHHHHHHhccCccccccCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 041798 84 SSVYEALPSFKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAV 163 (534)
Q Consensus 84 ~~~~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~ 163 (534)
..++++||+|+|||++|+++||++|+++||++|||+||.+|+++||+||+||+||+||+.++++++++.+|+++++|+++
T Consensus 39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~ 118 (457)
T KOG2085|consen 39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV 118 (457)
T ss_pred CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHH
Q 041798 164 NLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQRER 243 (534)
Q Consensus 164 NIFR~lPp~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRER 243 (534)
||||+|||..++++ +|+|||||++|++|||||+||++|+||++||++|+++||+|||++||++||++|||||||||
T Consensus 119 nifR~lpp~~n~~~----~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER 194 (457)
T KOG2085|consen 119 NIFRTLPPSVNPTG----FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER 194 (457)
T ss_pred HhhccCCcccCCCc----CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence 99999999998864 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCC
Q 041798 244 EYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKC 323 (534)
Q Consensus 244 d~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~ 323 (534)
|+|||+|||||||||++|+|||++|||+||+|||||++|||||||||||||||||||+|||||||+||.|||||||++++
T Consensus 195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~ 274 (457)
T KOG2085|consen 195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS 274 (457)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCC
Q 041798 324 VSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSH 403 (534)
Q Consensus 324 ~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~h 403 (534)
++.||+||+|||+||++|||+|++.||+||+||||+|||+||||||+||||||++++|.+|++||+|||+|||+|++|+|
T Consensus 275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H 354 (457)
T KOG2085|consen 275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH 354 (457)
T ss_pred ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 041798 404 FQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKE 483 (534)
Q Consensus 404 fqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~ 483 (534)
||||||||++|||+||+++|++|+++|+|||||+||+++++|||++|+++++||+|+|||||++||++|+++|++++.++
T Consensus 355 FQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~ 434 (457)
T KOG2085|consen 355 FQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE 434 (457)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 041798 484 KETQEKRESTWKRLEDLAASRA 505 (534)
Q Consensus 484 ~~~~~~r~~~W~~l~~~A~~~~ 505 (534)
++.+++|++.|++||++|+.++
T Consensus 435 ~~~~~~re~~W~~le~~~~~~~ 456 (457)
T KOG2085|consen 435 KETEEKREETWKRLEELAAENP 456 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999998765
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=4.1e-125 Score=1001.47 Aligned_cols=407 Identities=60% Similarity=1.052 Sum_probs=360.5
Q ss_pred cCCCCCCCCCCCcHHHHHHHHhccCccccccCCCCCchhHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHhhhc
Q 041798 89 ALPSFKDVPSAEKPNLFIRKLNMCCVIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVT--SKFNEVAMQEITKMVAVNLF 166 (534)
Q Consensus 89 ~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~~~Ke~Kr~tL~EL~~~v~~~~--~~lte~v~~~i~~Mi~~NIF 166 (534)
|||+|+||+++++++||++||++||++|||+||.+|.++||+||+||+||++|+++++ +.++|++++++++||++|||
T Consensus 1 ~lP~l~dv~~~e~~~lf~~Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~Nif 80 (409)
T PF01603_consen 1 PLPSLPDVPPPERQELFLKKLQQCCVIFDFSDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIF 80 (409)
T ss_dssp ------SS-SSSCSCHTTHHHHHHHHHSTTSSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCEeeCCCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999999999999999999999987 89999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHH
Q 041798 167 RTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYL 246 (534)
Q Consensus 167 R~lPp~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~L 246 (534)
|++||.++. .+|+|||+++.||+|||||+||++|++|++++++++ +|+|||++|+.+|+++|+|||||||++|
T Consensus 81 R~lP~~~~~-----~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~--~~~~i~~~fi~~Ll~l~~S~D~rER~~l 153 (409)
T PF01603_consen 81 RPLPPIPNP-----SFDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDP--AKKYIDQKFIKKLLELFDSPDPRERDYL 153 (409)
T ss_dssp S-----SS-------S-GGG------TTHHHHHHHHHHHHHHHTSTT--C--CTTTS-HHHHHHHHHTTTSSTHHHHHHH
T ss_pred CCCCCcccc-----cCCccccccccccccHhHHHHHHHHHHHHHCccccH--HHHHcCHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999875 478999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCccc
Q 041798 247 KTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSM 326 (534)
Q Consensus 247 ktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~ 326 (534)
|++||||||||+++|++||++|+|+|++|+||+++|+||+|||||+|||||||++|||+||+.||.++|+|||++++++.
T Consensus 154 k~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~ 233 (409)
T PF01603_consen 154 KTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSS 233 (409)
T ss_dssp HHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGG
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHH
Q 041798 327 YHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQV 406 (534)
Q Consensus 327 y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqV 406 (534)
||+||+||+++|++|||+|+..+++||+||||+||++|||+||+||++||+.+++++|++++.|+|++||+|++|+||||
T Consensus 234 y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qV 313 (409)
T PF01603_consen 234 YHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQV 313 (409)
T ss_dssp THHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 041798 407 AERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKET 486 (534)
Q Consensus 407 AErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~~~~ 486 (534)
|||||++|+|++|++++.+|++.|+|+|+|+|++++++|||++||++|++|+++|++|||++|++|+++|++++++++++
T Consensus 314 AErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~ 393 (409)
T PF01603_consen 314 AERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAR 393 (409)
T ss_dssp HHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041798 487 QEKRESTWKRLEDLAA 502 (534)
Q Consensus 487 ~~~r~~~W~~l~~~A~ 502 (534)
+++|+++|++|+++|+
T Consensus 394 ~~~r~~~W~~i~~~A~ 409 (409)
T PF01603_consen 394 EKKRKKKWKKIEEAAK 409 (409)
T ss_dssp SHHHHHHHTT-S----
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999985
No 3
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=9.3e-37 Score=288.21 Aligned_cols=134 Identities=60% Similarity=0.955 Sum_probs=130.4
Q ss_pred HhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHH
Q 041798 340 EKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHI 419 (534)
Q Consensus 340 eKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i 419 (534)
...+.++...+++|.+|||++++.||.+||++| ||||||++||||+|
T Consensus 35 ~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl---------------------------------VAERAL~lWnNe~i 81 (170)
T PLN00122 35 AVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL---------------------------------VAERALFLWNNDHI 81 (170)
T ss_pred ccCCCccccccccccCCCCCCchHHHHHHHHHH---------------------------------HHHHHHHHHccHHH
Confidence 457888999999999999999999999999999 99999999999999
Q ss_pred HHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041798 420 RNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLED 499 (534)
Q Consensus 420 ~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~ 499 (534)
++||.+|+.+|+|||||+||+++++|||++|++++++|+||||||||+||++|+++|+++++++++.+++|+++|++|++
T Consensus 82 ~~LI~~N~~~IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~ 161 (170)
T PLN00122 82 VNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEE 161 (170)
T ss_pred HHHHHHhhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 041798 500 LAASRAV 506 (534)
Q Consensus 500 ~A~~~~~ 506 (534)
+|++++.
T Consensus 162 ~A~~~~~ 168 (170)
T PLN00122 162 AAAAKAI 168 (170)
T ss_pred HHHhccC
Confidence 9998874
No 4
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=97.36 E-value=0.00097 Score=64.04 Aligned_cols=32 Identities=56% Similarity=0.883 Sum_probs=29.4
Q ss_pred ccCcccccccccCCCCCCCCCCCcHHHHHHHH
Q 041798 78 VGSLLNSSVYEALPSFKDVPSAEKPNLFIRKL 109 (534)
Q Consensus 78 ~~~~~~~~~~~~lP~l~dv~~~e~~~Lf~~Kl 109 (534)
.++......+++||+|+|||.+|+++||++||
T Consensus 36 ~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl 67 (170)
T PLN00122 36 VNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL 67 (170)
T ss_pred cCCCccccccccccCCCCCCchHHHHHHHHHH
Confidence 46667788999999999999999999999999
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.28 E-value=1.6 Score=47.53 Aligned_cols=175 Identities=15% Similarity=0.184 Sum_probs=109.8
Q ss_pred HHHHHhhc-CCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHH
Q 041798 228 VLRLLDLF-DSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEE 306 (534)
Q Consensus 228 i~~Ll~lf-dSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeE 306 (534)
+..|+..+ +..|+.-|..+-..+..+-.++...-.+....+-+++ .... ..-..|+...+..++... ..+++.
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll----~~~~-~~~~~~~~~~i~~ll~~~-~~~~~~ 414 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL----EISG-DYVSNEIINVIRDLLSNN-PELREK 414 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH----HCTG-GGCHCHHHHHHHHHHHHS-TTTHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh----hhcc-ccccchHHHHHHHHhhcC-hhhhHH
Confidence 33455555 5556666666666666666666655445444443333 2221 222556666666666553 222222
Q ss_pred HHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhccC--cHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHH
Q 041798 307 HKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFK--LADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEF 384 (534)
Q Consensus 307 Hk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~--La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f 384 (534)
....|+-+...-.....-.-..+|+..|.+..+. .+..+++.+.+.|...+..-+...|..+..+....+.++.
T Consensus 415 ----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~ 490 (526)
T PF01602_consen 415 ----ILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV 490 (526)
T ss_dssp ----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH
T ss_pred ----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh
Confidence 2333333333333334567778999999888877 8999999999999988877778888888888877665444
Q ss_pred HHHHHHHHHHHHHhhC--CCCHHHHHHHHHhhc
Q 041798 385 QRCMVPLFRQIGRCLN--SSHFQVAERALFLWN 415 (534)
Q Consensus 385 ~~i~~pLF~~la~cl~--S~hfqVAErAL~~w~ 415 (534)
.+ .+...+..+.. |.++.|-+||.++|.
T Consensus 491 ~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 491 QN---EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HH---HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 33 45566666667 999999999999984
No 6
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.78 E-value=19 Score=41.01 Aligned_cols=88 Identities=15% Similarity=0.253 Sum_probs=52.5
Q ss_pred chhhHHHHHHH---HHHhccCcHH---HHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhh-
Q 041798 327 YHQQLSYCITQ---FVEKDFKLAD---TVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCL- 399 (534)
Q Consensus 327 y~~qL~yci~q---FveKDp~La~---~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl- 399 (534)
.-..+.+|+.+ |+.+...-+. .+.+.++=.|=......++-+|..+.|+...+.+.+...++.++|..|-..+
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 44567888887 5555555443 4444444444445558899999999999999987778888899999996554
Q ss_pred -----CCCCHHHHHHHHHhh
Q 041798 400 -----NSSHFQVAERALFLW 414 (534)
Q Consensus 400 -----~S~hfqVAErAL~~w 414 (534)
.+.+|-..|..|+.+
T Consensus 321 ~~~~~~~l~fs~vEcLL~af 340 (556)
T PF05918_consen 321 SKKTEPKLQFSYVECLLYAF 340 (556)
T ss_dssp ---------HHHHHHHHHHH
T ss_pred CCCCCCcccchHhhHHHHHH
Confidence 345677778777655
No 7
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.35 E-value=10 Score=44.44 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHH--HHHHHHHHhCChH
Q 041798 305 EEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFL--GELEEVLEATQAA 382 (534)
Q Consensus 305 eEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL--~eleeILe~~~~~ 382 (534)
+.|++ .+.|+.|...+.-..| -+..||-++..|+|+|.++.++ +|+=.+.-+-++..| +.|..++. ..
T Consensus 319 ~~~~i--~kaLvrLLrs~~~vqy--vvL~nIa~~s~~~~~lF~P~lK---sFfv~ssDp~~vk~lKleiLs~La~---es 388 (968)
T KOG1060|consen 319 QVTKI--AKALVRLLRSNREVQY--VVLQNIATISIKRPTLFEPHLK---SFFVRSSDPTQVKILKLEILSNLAN---ES 388 (968)
T ss_pred HHHHH--HHHHHHHHhcCCcchh--hhHHHHHHHHhcchhhhhhhhh---ceEeecCCHHHHHHHHHHHHHHHhh---hc
Confidence 44544 8999999888877776 5778999999999999998765 455555555555543 33333332 22
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHH
Q 041798 383 EFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFS 462 (534)
Q Consensus 383 ~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~ 462 (534)
.. ..|++-+-.-+.|+|++||-.|..-.. ....+...+-+-.+..|..-.++| +..|..-+-.|+|+|.
T Consensus 389 ni----~~ILrE~q~YI~s~d~~faa~aV~AiG------rCA~~~~sv~~tCL~gLv~Llssh-de~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 389 NI----SEILRELQTYIKSSDRSFAAAAVKAIG------RCASRIGSVTDTCLNGLVQLLSSH-DELVVAEAVVVIKRLL 457 (968)
T ss_pred cH----HHHHHHHHHHHhcCchhHHHHHHHHHH------HHHHhhCchhhHHHHHHHHHHhcc-cchhHHHHHHHHHHHH
Confidence 22 347777888889999998888775442 244455555566677788888888 9999999999999999
Q ss_pred HhcHHHHHHHHHH
Q 041798 463 DADQALFDECLAR 475 (534)
Q Consensus 463 e~D~~lf~~c~~~ 475 (534)
.+||.--.+...+
T Consensus 458 q~~p~~h~~ii~~ 470 (968)
T KOG1060|consen 458 QKDPAEHLEILFQ 470 (968)
T ss_pred hhChHHHHHHHHH
Confidence 9999877666554
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=78.43 E-value=20 Score=34.77 Aligned_cols=104 Identities=14% Similarity=0.233 Sum_probs=65.4
Q ss_pred CCChhHhHHHHHHHHHHHhC----ChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhcccccccccc
Q 041798 360 TNSSKEVMFLGELEEVLEAT----QAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIF 435 (534)
Q Consensus 360 tns~KEvlFL~eleeILe~~----~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~ 435 (534)
.+=.+.+--|..|..++..- .+..|...+..+...|..+++|.+.+|+-.|+.++.. +.......-...++.++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~--l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSD--LARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHH--HHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHhHhHHHHHHHHH
Confidence 33456666788888887755 2344444455566799999999999999999988853 44445555555567788
Q ss_pred HHHHHhhhhcchHHHHHHHHHHHHHHHHhcH
Q 041798 436 PALERNTRGHWNQAVQSLTLNVRKIFSDADQ 466 (534)
Q Consensus 436 paL~~~sk~HWn~~Vr~la~~vlkil~e~D~ 466 (534)
|.|.+..... ++.|+..|.+++..+.+.-+
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 8887665333 78999999999999888766
No 9
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=74.40 E-value=57 Score=33.55 Aligned_cols=171 Identities=18% Similarity=0.264 Sum_probs=87.0
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhc-cCCcCChHHHHHHHHHHHhccCCCch-----
Q 041798 231 LLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFE-TEKHNGIAELLEILGSIINGFALPLK----- 304 (534)
Q Consensus 231 Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e-~e~hnGIaELLeIlgSIInGfa~PLK----- 304 (534)
|=+.+-|+|+..|..--.+|..+-.+..... .=++.+ +.+.+|.-+ -+.|.++.+.|.-+..+++--..+-.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~-L~~~ev-~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF-LSRQEV-QVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh-ccHHHH-HHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHH
Confidence 3345667888888776666666666554211 112233 333333322 35666666666666555521111110
Q ss_pred --------------HHHHHHHHHHHhccCCCC--CcccchhhHHHHHHHHH--HhccC---cHHHHHHHhhccCCCCCCh
Q 041798 305 --------------EEHKLFLVRALIPLHKPK--CVSMYHQQLSYCITQFV--EKDFK---LADTVIRGLLKYWPLTNSS 363 (534)
Q Consensus 305 --------------eEHk~Fl~rvLlPLHk~k--~~~~y~~qL~yci~qFv--eKDp~---La~~vi~~LLk~WP~tns~ 363 (534)
+..+....++|.=|.... .+......+.+.+++.+ ||||. ++..+++.+++.||..
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~--- 158 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDIS--- 158 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc---
Confidence 111111122222221111 11223445666777776 79998 5668889999999942
Q ss_pred hHhHHHHHHHHHHHhCChHHHH--------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 041798 364 KEVMFLGELEEVLEATQAAEFQ--------RCMVPLFRQIGRCLNSSHFQVAERA 410 (534)
Q Consensus 364 KEvlFL~eleeILe~~~~~~f~--------~i~~pLF~~la~cl~S~hfqVAErA 410 (534)
-|..++-+++..-=|..|. --...|=..|..|+.|.+ ..|+-|
T Consensus 159 ---~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~~ 209 (262)
T PF14500_consen 159 ---EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPFA 209 (262)
T ss_pred ---hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHHH
Confidence 3455555555421122222 123457778888988754 334444
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=65.86 E-value=84 Score=37.28 Aligned_cols=289 Identities=17% Similarity=0.276 Sum_probs=160.5
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCCCCCCCccCCCCCc----chHHHHHHHHHHhhC--CcCCHHHHhcccCHHHHHHH
Q 041798 158 TKMVAVNLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWP----HLQVVYEILLRFVAS--PETDAKLAKRYIDHSFVLRL 231 (534)
Q Consensus 158 ~~Mi~~NIFR~lPp~~~~~~~~~~~d~eedep~~e~aWp----HLqlVYeillrfv~s--~~~d~~~ak~~id~~Fi~~L 231 (534)
++|+.+|..-.+-....+.++ +.| +.++.|-|. |-..+..-|++-+-. |..|+..| .|++...++.|
T Consensus 569 VR~itAlalsalaeaa~Pygi-e~f-----DsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya-~yyTrevmlil 641 (1172)
T KOG0213|consen 569 VRTITALALSALAEAATPYGI-EQF-----DSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA-SYYTREVMLIL 641 (1172)
T ss_pred hhhHHHHHHHHHHHhcCCcch-HHH-----HHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH-HHhHHHHHHHH
Confidence 445555554444333332221 233 246678886 778888888887764 66787765 47888899999
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCC----hHHHHHHHHH---------HHhc
Q 041798 232 LDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNG----IAELLEILGS---------IING 298 (534)
Q Consensus 232 l~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnG----IaELLeIlgS---------IInG 298 (534)
+.-|+|+|..=...+..++.++-++--.--.|||..|--.|...--. .+--| -..|.+.-.+ ||+.
T Consensus 642 ~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~-rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R 720 (1172)
T KOG0213|consen 642 IREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWG-RRMALDRRNYKQLVDTTVEIAAKVGSDPIVSR 720 (1172)
T ss_pred HHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhh-hhhhccccchhhHHHHHHHHHHHhCchHHHHH
Confidence 99999999876666666667777776677788988776655443222 11111 0122222222 3334
Q ss_pred cCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHH------HHhccCcHHHHHHHhhccCCCCCChhHhHHHHHH
Q 041798 299 FALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQF------VEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGEL 372 (534)
Q Consensus 299 fa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qF------veKDp~La~~vi~~LLk~WP~tns~KEvlFL~el 372 (534)
.-.+||.|..+| ..--...+... ..-|.+|-+..++|++--+-...+.--|||+..
T Consensus 721 ~v~~lkde~e~y-----------------rkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf- 782 (1172)
T KOG0213|consen 721 VVLDLKDEPEQY-----------------RKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF- 782 (1172)
T ss_pred HhhhhccccHHH-----------------HHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH-
Confidence 444455443332 11112222222 235777888889999888877666655665532
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHH----------H--------HHHhhccccccccc
Q 041798 373 EEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHI----------R--------NLINLNRKVILPII 434 (534)
Q Consensus 373 eeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i----------~--------~li~~n~~~IlPii 434 (534)
.-+...+ ....++...+|+.-+-.-+++...+|-.+|+.+...-.. + .-+.+....+++.|
T Consensus 783 g~V~~~l-g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsI 861 (1172)
T KOG0213|consen 783 GTVVNAL-GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSI 861 (1172)
T ss_pred HHHHHHH-hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHH
Confidence 2222111 111244566677777777888888888887766543211 0 01112223344555
Q ss_pred cHHHHHhhhhc----chHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 041798 435 FPALERNTRGH----WNQAVQSLTLNVRKIFSDADQALFDECL 473 (534)
Q Consensus 435 ~paL~~~sk~H----Wn~~Vr~la~~vlkil~e~D~~lf~~c~ 473 (534)
+.+++....-| --..++++.=.+.-||..--.++-+.|.
T Consensus 862 LgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~I 904 (1172)
T KOG0213|consen 862 LGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCI 904 (1172)
T ss_pred HHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHH
Confidence 55555544444 3344555555555555555555544444
No 11
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.48 E-value=1.9e+02 Score=34.06 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=93.8
Q ss_pred HHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhh
Q 041798 346 ADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINL 425 (534)
Q Consensus 346 a~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~ 425 (534)
..+.|+-+++. ..+-+=-++++.-+.-|++.+++++|..-+.| .|-+|+++.-.++=|++|... +.+.+.+-
T Consensus 350 ~~p~l~pi~~~--~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~Ilp---lL~~S~~~~~~~iQ~~~L~~l--ptv~e~iD- 421 (700)
T KOG2137|consen 350 MLPALKPIYSA--SDPKQALLFILENMDLLKEKTPPEEVKEKILP---LLYRSLEDSDVQIQELALQIL--PTVAESID- 421 (700)
T ss_pred hhHHHHHHhcc--CCcccchhhHHhhHHHHHhhCChHHHHHHHHH---HHHHHhcCcchhhHHHHHHhh--hHHHHhcc-
Confidence 44555555555 22234446777778888999999999765555 677899999999999999887 44545443
Q ss_pred ccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041798 426 NRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSD-ADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAASR 504 (534)
Q Consensus 426 n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e-~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~~~ 504 (534)
-..+=..|+|.|+.....|=+..|+.-+.-++..+++ +|.- .|+.....--+.-+-.+-.-...--+|-+.|..+
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~---~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA---AVLDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 2333345677778778888899999888887776661 2211 1222211111111112223345566777777777
Q ss_pred CCCC
Q 041798 505 AVSN 508 (534)
Q Consensus 505 ~~~~ 508 (534)
...|
T Consensus 498 ~~~g 501 (700)
T KOG2137|consen 498 IYSG 501 (700)
T ss_pred cccc
Confidence 6666
No 12
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=65.25 E-value=1.2e+02 Score=35.34 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHH
Q 041798 227 FVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILG 293 (534)
Q Consensus 227 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlg 293 (534)
-|.+|+.+++|.|..+.+.+|..+++.+.. +.-+++-. .+..|..+ .|-.-.++||.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l~~----~l~~y~~~----t~s~~~~~il~ 61 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNS--DREPWLVN----GLVDYYLS----TNSQRALEILV 61 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHHHH----HHHHHHhh----cCcHHHHHHHH
Confidence 367899999999999999999999998874 22245533 33444333 34455677774
No 13
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=61.89 E-value=2.1e+02 Score=30.07 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=45.8
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHH
Q 041798 376 LEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTL 455 (534)
Q Consensus 376 Le~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~ 455 (534)
+-.++++.|.. +..-+..++.+++..|++.+|....+ ++..... .=...+...+.+-...+..
T Consensus 155 l~~lp~~~f~~----~idsi~wg~kh~~~~I~~~~L~~l~~-----ll~~~~~--------~~~~~~~~F~~~y~~~il~ 217 (319)
T PF08767_consen 155 LLQLPPEQFKL----VIDSIVWGFKHTNREISETGLNILLE-----LLNNVSK--------TNPEFANQFYQQYYLDILQ 217 (319)
T ss_dssp HHHS-HHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHH-----HHHHHHH---------SHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHH----HHHHHHHHhCCCcHHHHHHHHHHHHH-----HHHHHHh--------cCHHHHHHHHHHHHHHHHH
Confidence 33477888876 55677888999999999999987742 2222111 0012234455555566666
Q ss_pred HHHHHHHHhcHH
Q 041798 456 NVRKIFSDADQA 467 (534)
Q Consensus 456 ~vlkil~e~D~~ 467 (534)
.++.++.|.+.+
T Consensus 218 ~if~vltD~~Hk 229 (319)
T PF08767_consen 218 DIFSVLTDSDHK 229 (319)
T ss_dssp HHHHHHHSTT-G
T ss_pred HHHHHHHCcccH
Confidence 777777666643
No 14
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=59.12 E-value=18 Score=32.03 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=57.9
Q ss_pred HHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCCh---HH----HHHHHHHHHHHHHHhhCCCCHHH
Q 041798 334 CITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQA---AE----FQRCMVPLFRQIGRCLNSSHFQV 406 (534)
Q Consensus 334 ci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~---~~----f~~i~~pLF~~la~cl~S~hfqV 406 (534)
=+++|+-.+..-+..++..+.++-..+.+.+.+..|.-+.+|+-.... .. |.+.....|..+.......+-+=
T Consensus 18 ~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~k 97 (121)
T smart00582 18 TLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKK 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555555556667777777777778888899999999999976522 23 44455556666666555456677
Q ss_pred HHHHHHhhcch
Q 041798 407 AERALFLWNND 417 (534)
Q Consensus 407 AErAL~~w~N~ 417 (534)
..+-+.+|...
T Consensus 98 i~kll~iW~~~ 108 (121)
T smart00582 98 IRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHhcC
Confidence 77888999863
No 15
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=58.83 E-value=43 Score=29.34 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHhhCCCCHH
Q 041798 329 QQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQ---AAEFQRCMVPLFRQIGRCLNSSHFQ 405 (534)
Q Consensus 329 ~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~---~~~f~~i~~pLF~~la~cl~S~hfq 405 (534)
++-..-+++++..+..-+..++..+.++=-.+.+.+.+.+|.-+.+|+-.+. ...|.....++|.....-.+..+-+
T Consensus 18 ~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~ 97 (114)
T cd03562 18 QPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRK 97 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3444556777777778888888888888888889999999999999998753 5567777788887777655555556
Q ss_pred HHHHHHHhhcch
Q 041798 406 VAERALFLWNND 417 (534)
Q Consensus 406 VAErAL~~w~N~ 417 (534)
=..|-+.+|...
T Consensus 98 kl~rl~~iW~~~ 109 (114)
T cd03562 98 KLERLLNIWEER 109 (114)
T ss_pred HHHHHHHHccCC
Confidence 666777888754
No 16
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=57.48 E-value=2.3e+02 Score=28.96 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=39.3
Q ss_pred ccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCH-HHHHHHHHh
Q 041798 342 DFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHF-QVAERALFL 413 (534)
Q Consensus 342 Dp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hf-qVAErAL~~ 413 (534)
+|+-...+++.+..+|..-...|.- -.-++.+++..++++...++..+...+...+..++- -|...+|..
T Consensus 141 ~~~~~~~i~~~l~~~~~~l~~~~~G--~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~ 211 (322)
T cd07920 141 PPEDLQFIIDAFKGNCVALSTHPYG--CRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLEL 211 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCccc--cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhc
Confidence 3445556666666655543332211 123666777777777777777776666666655443 455555444
No 17
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=55.14 E-value=49 Score=29.73 Aligned_cols=91 Identities=14% Similarity=0.207 Sum_probs=57.1
Q ss_pred HHHHHHhC-ChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhh------cchHHHHHHhhccccccccccHHHHHhhhh
Q 041798 372 LEEVLEAT-QAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLW------NNDHIRNLINLNRKVILPIIFPALERNTRG 444 (534)
Q Consensus 372 leeILe~~-~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w------~N~~i~~li~~n~~~IlPii~paL~~~sk~ 444 (534)
+.+|...+ +..++..++.-|.++|.. ....+..+.-.||.+. .++.|+.-+..+...|-..--=......-.
T Consensus 24 l~eIa~~t~~~~~~~~I~~~l~kRL~~-~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~ 102 (125)
T PF01417_consen 24 LAEIAQLTYNSKDCQEIMDVLWKRLSK-SDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGK 102 (125)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHS-STSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTST
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCc
Confidence 44555555 558888888888888733 3557778888888765 346666666555555533311100011123
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 041798 445 HWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 445 HWn~~Vr~la~~vlkil~e 463 (534)
.|...||..|..++.+|.|
T Consensus 103 d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 103 DQGQNVREKAKEILELLND 121 (125)
T ss_dssp BHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 5889999999999999865
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=54.77 E-value=3.2e+02 Score=29.80 Aligned_cols=180 Identities=15% Similarity=0.170 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhc
Q 041798 199 QVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFE 278 (534)
Q Consensus 199 qlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e 278 (534)
.++|+....++.-++.++ .-...+..|+.++.+.|+.=|-..-..|+.|-... .+.+...-..+| ++..
T Consensus 246 ~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~~~~~~~~--~l~~ 314 (526)
T PF01602_consen 246 SVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVFNQSLILF--FLLY 314 (526)
T ss_dssp HHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHGTHHHHHH--HHHC
T ss_pred HHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhhhhhhhhh--eecC
Confidence 566666666654322211 33456777889999999988877777677666543 344441111111 2221
Q ss_pred cCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCC
Q 041798 279 TEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWP 358 (534)
Q Consensus 279 ~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP 358 (534)
.+...=-...|+++..+.+- +...-....|+.-.+...-..|...+...+...+++.+.-..+++..+++.=-
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~-------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANE-------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHhhcccc-------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 11211123456777666642 11122233333333222223488889999999999999999999988887776
Q ss_pred CCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 041798 359 LTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGR 397 (534)
Q Consensus 359 ~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~ 397 (534)
..+..-.--.+..+..++... |+....+...+++.+..
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~-~~~~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNN-PELREKILKKLIELLED 425 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHS-TTTHHHHHHHHHHHHTS
T ss_pred hccccccchHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 654444444456666666553 33344455555555544
No 19
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=53.20 E-value=3.3e+02 Score=29.52 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=112.1
Q ss_pred HHHHHHHhh-cCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCch
Q 041798 226 SFVLRLLDL-FDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLK 304 (534)
Q Consensus 226 ~Fi~~Ll~l-fdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLK 304 (534)
.++.+++.+ ..++|+..|-..-..|-.+..||..- ..+...+...+..+ ........-...++++.-|.+|..+-..
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-DDLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 377788887 66778888888888888888886542 23444443333333 1222222334566777666666544333
Q ss_pred HHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHh-c----------------cCcHHHHHHHhhccCCCCCChhHhH
Q 041798 305 EEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEK-D----------------FKLADTVIRGLLKYWPLTNSSKEVM 367 (534)
Q Consensus 305 eEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveK-D----------------p~La~~vi~~LLk~WP~tns~KEvl 367 (534)
+.-..+ ...|+-|...+.++. ..+....-++.. | -++...++..|+..+-.++.....-
T Consensus 267 ~~~~~~-~~~L~~lL~~~~~g~---~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 267 PLATEL-LDKLLELLSSPELGQ---QAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred chHHHH-HHHHHHHhCChhhHH---HHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 333333 333555555543332 222222222222 0 2334456666666666665545556
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q 041798 368 FLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLW 414 (534)
Q Consensus 368 FL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w 414 (534)
+|.-+..|+..++.+-...-+..|+..+-+|++.++..|-..+|...
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL 389 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL 389 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 68899999999998888888899999999999999998777777544
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=52.68 E-value=50 Score=37.93 Aligned_cols=105 Identities=22% Similarity=0.369 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhcc---hHHHH-HH-hh-------c-------cccccccccHHHHHhh----hhc
Q 041798 389 VPLFRQIGRCLNSSHFQVAERALFLWNN---DHIRN-LI-NL-------N-------RKVILPIIFPALERNT----RGH 445 (534)
Q Consensus 389 ~pLF~~la~cl~S~hfqVAErAL~~w~N---~~i~~-li-~~-------n-------~~~IlPii~paL~~~s----k~H 445 (534)
.-||...++.+.|+|-+||-.|..||.. |.+.. +. .+ | ...|+|.++.-|.+-. ..-
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~Dd 341 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD 341 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 4588899999999999999999999932 22211 11 11 1 2447788777777622 235
Q ss_pred chHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041798 446 WNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAAS 503 (534)
Q Consensus 446 Wn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~~ 503 (534)
||.. ..|..+|.+|-+..-+.--+-.-.|-+ +.-|.+.|...+..+..
T Consensus 342 Wn~s--maA~sCLqlfaq~~gd~i~~pVl~FvE--------qni~~~~w~nreaavmA 389 (858)
T COG5215 342 WNPS--MAASSCLQLFAQLKGDKIMRPVLGFVE--------QNIRSESWANREAAVMA 389 (858)
T ss_pred cchh--hhHHHHHHHHHHHhhhHhHHHHHHHHH--------HhccCchhhhHHHHHHH
Confidence 9864 456667776655443322222222332 23456789888887753
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=49.25 E-value=2.5e+02 Score=27.07 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=97.8
Q ss_pred CCCChHHHHHHHHHHHHHhhcc--cCchHHHHHHHH---HHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHH
Q 041798 236 DSEDQREREYLKTILHRIYGKF--MVHRPFIRKAIN---NIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLF 310 (534)
Q Consensus 236 dSeDpRERd~LktiLhrIY~Kf--~~~R~fIRk~In---nif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~F 310 (534)
.+.|=.+|.---+-|.++...- ...++-+-..+. ..+..-+. +.+..-..+.+.+++.+..+....+++. -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 4566666665555555555433 222222222222 11222111 2233345677788888887766665543 444
Q ss_pred HHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCC--hHHHHH--
Q 041798 311 LVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQ--AAEFQR-- 386 (534)
Q Consensus 311 l~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~--~~~f~~-- 386 (534)
+...|+-++.... ....+.-..|+..+++.-+-....++..+...+---|+.=-..-+.-+..++...+ ...+..
T Consensus 95 ~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 95 LLPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 4566666665543 24556667788888876552223336666666666665555566777777777766 333433
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhcccccccc
Q 041798 387 CMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPI 433 (534)
Q Consensus 387 i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPi 433 (534)
....+.+.|.+|++..+..|=+.|-..|. .+...+.+....++-.
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~--~l~~~~~~~a~~~~~~ 218 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLW--ALYSHFPERAESILSM 218 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHH--HHHHHH-HHH------
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHHHCCHhhccchhc
Confidence 34778899999999999999888876663 2344444444444433
No 22
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=48.83 E-value=1.7e+02 Score=26.86 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCH-HHHHHHHHh---hcchHHHHHHhhccccccccccHHHHHh--
Q 041798 368 FLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHF-QVAERALFL---WNNDHIRNLINLNRKVILPIIFPALERN-- 441 (534)
Q Consensus 368 FL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hf-qVAErAL~~---w~N~~i~~li~~n~~~IlPii~paL~~~-- 441 (534)
.++||.++... ++.+|..++.-|.++|.. .|+|. .=|.+-|.. -.++.|...+.+|...|-- .....
T Consensus 21 ~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~--~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~----~~~f~g~ 93 (122)
T cd03572 21 LYEEIAKLTRK-SVGSCQELLEYLLKRLKR--SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRE----CANYKGP 93 (122)
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHH----HHHcCCC
Confidence 35666665544 788999999999999997 88887 334554422 2457788888777644321 11111
Q ss_pred ----hhhcchHHHHHHHHHHHHHHHH
Q 041798 442 ----TRGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 442 ----sk~HWn~~Vr~la~~vlkil~e 463 (534)
.-.-+++.||..|..+++++..
T Consensus 94 ~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 94 PDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCcccCcchhHHHHHHHHHHHHHHhc
Confidence 1134899999999999998754
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=46.87 E-value=1.4e+02 Score=33.51 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhccccccccc-----cHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 041798 389 VPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPII-----FPALERNTRGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 389 ~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii-----~paL~~~sk~HWn~~Vr~la~~vlkil~e 463 (534)
..++..|..|+.++.-.||+.|..+..+ +..+.. .+..+ .+.|.....+ =|..+|-.++.++--+..
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~------l~~~~~-~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKK------LASHPE-GLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIAS 189 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHH------HhCCch-hHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHh
Confidence 4588899999999999999999977643 222211 11222 4555544433 377899999999999999
Q ss_pred hcHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 041798 464 ADQALFDECLAR--FQEDEMK-EKETQEKRESTWKRLEDLAA 502 (534)
Q Consensus 464 ~D~~lf~~c~~~--~~~~~~~-~~~~~~~r~~~W~~l~~~A~ 502 (534)
..+++++.|... +..-... ..+.---+....+-+.+.|.
T Consensus 190 ~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 190 HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 999999988762 2211110 11122223455666666665
No 24
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=46.37 E-value=2.4e+02 Score=31.64 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=41.1
Q ss_pred HHHHhhcchHH-HHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 041798 409 RALFLWNNDHI-RNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLA 474 (534)
Q Consensus 409 rAL~~w~N~~i-~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~ 474 (534)
++|..|....+ ..++... |++++....+.- +..+|..+..++..+.|++|.+...-+.
T Consensus 195 ~~L~~~~~~~~fkTlv~~~-------i~~~le~~~~~~-d~~~r~~~~di~~~~ve~~~~~i~~~~~ 253 (458)
T KOG2175|consen 195 KALQPQSRDAFFKTLVNKG-------ILDALEYVLKMP-DTQVRSAATDILARLVEMSPSMIRSFTL 253 (458)
T ss_pred HhcCcchhhHHHHHHHHhh-------hHHHHHHHhcCC-cchhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35555665553 2233322 566677666666 8899999999999999999998886654
No 25
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=43.11 E-value=85 Score=27.81 Aligned_cols=101 Identities=17% Similarity=0.298 Sum_probs=54.2
Q ss_pred cHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCC-CCHH-HHHHHHHhhcchHHHHH
Q 041798 345 LADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNS-SHFQ-VAERALFLWNNDHIRNL 422 (534)
Q Consensus 345 La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S-~hfq-VAErAL~~w~N~~i~~l 422 (534)
++..+..-..+.||..++. |+.++-.++.. ++.... ....+++.+.+=+.+ .+-. -.+| ...+...
T Consensus 8 l~~~l~~i~~~~~P~~Wp~----~l~~l~~~~~~-~~~~~~-~~L~iL~~l~eEi~~~~~~~~~~~r------~~~l~~~ 75 (148)
T PF08389_consen 8 LAQVLAEIAKRDWPQQWPD----FLEDLLQLLQS-SPQHLE-LVLRILRILPEEITDFRRSSLSQER------RRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHTTTTSTT----HHHHHHHHHHT-THHHHH-HHHHHHHHHHHHHHTSHCCHSHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHChhhCch----HHHHHHHHhcc-chhHHH-HHHHHHHHHHHHHHhhhchhhhHHH------HHHHHHH
Confidence 5666777788899998886 66666666554 333332 333455555544433 1111 1111 3444555
Q ss_pred HhhccccccccccHHHHHhhhhcch---HHHHHHHHHHHHHH
Q 041798 423 INLNRKVILPIIFPALERNTRGHWN---QAVQSLTLNVRKIF 461 (534)
Q Consensus 423 i~~n~~~IlPii~paL~~~sk~HWn---~~Vr~la~~vlkil 461 (534)
+.++. |.++..+++....+.+ ..+...+..+++.+
T Consensus 76 l~~~~----~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~ 113 (148)
T PF08389_consen 76 LRSNS----PDILEILSQILSQSSSEANEELVKAALKCLKSW 113 (148)
T ss_dssp HHHHH----HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 65554 4444545554445444 56666666665543
No 26
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=41.36 E-value=2.3e+02 Score=26.43 Aligned_cols=112 Identities=19% Similarity=0.311 Sum_probs=72.2
Q ss_pred hhHhHHHHHHHHHHHhCC-----h---HHHH-HHHHHHHHHHHHhhCCCCHHHHHHHHHhhcc--hHHHHHHhhcccccc
Q 041798 363 SKEVMFLGELEEVLEATQ-----A---AEFQ-RCMVPLFRQIGRCLNSSHFQVAERALFLWNN--DHIRNLINLNRKVIL 431 (534)
Q Consensus 363 ~KEvlFL~eleeILe~~~-----~---~~f~-~i~~pLF~~la~cl~S~hfqVAErAL~~w~N--~~i~~li~~n~~~Il 431 (534)
...++=|.-|+.+|+.-. . ..|. -+...+|..|.+.+.+++++|.++++.+.-+ .++...++.-.+.++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777787877432 2 2443 3458899999999999999999998854432 233444455556666
Q ss_pred ccccHHHHHhhh-hcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 041798 432 PIIFPALERNTR-GHWNQAVQSLTLNVRKIFSDADQALFDECLARFQE 478 (534)
Q Consensus 432 Pii~paL~~~sk-~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~ 478 (534)
+.++-.+..... ..| -|.++..+++-+-. ||.+.-+.=.+|..
T Consensus 117 ~~i~~~il~~~~~~~~---~k~~~Le~l~~l~~-~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 117 SHIILRILESDNSSLW---QKELALEILRELCK-DPQFLVDLFVNYDC 160 (168)
T ss_pred HHHHHHHHccCCCcHH---HHHHHHHHHHHHHh-ChhHHHHHHHHcCC
Confidence 666554443333 356 56778888887764 77777666666654
No 27
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=40.86 E-value=3e+02 Score=32.94 Aligned_cols=119 Identities=17% Similarity=0.104 Sum_probs=71.7
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhc-ccCchHHHHHHHHHHHHHhhhccCC---cCChHHHHHHHHHHHh--ccCCCch
Q 041798 231 LLDLFDSEDQREREYLKTILHRIYGK-FMVHRPFIRKAINNIFYRFIFETEK---HNGIAELLEILGSIIN--GFALPLK 304 (534)
Q Consensus 231 Ll~lfdSeDpRERd~LktiLhrIY~K-f~~~R~fIRk~Innif~~FI~e~e~---hnGIaELLeIlgSIIn--Gfa~PLK 304 (534)
+.+.+.|+|-.--+++-++-..==.+ |++ |..-++++|-++--...+ ..-+.-.|+++.||++ .---|+.
T Consensus 379 f~d~g~spdlaal~fl~~~~sKrke~Tfqg----iLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~a 454 (970)
T COG5656 379 FFDNGLSPDLAALFFLIISKSKRKEETFQG----ILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAA 454 (970)
T ss_pred hhcCCCChhHHHHHHHHHHhcccchhhhhh----HHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHH
Confidence 44556677776666554431111011 333 445566677666544322 2234568999999999 2334666
Q ss_pred HHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHH--hccCcHHHHHHHhh
Q 041798 305 EEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVE--KDFKLADTVIRGLL 354 (534)
Q Consensus 305 eEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFve--KDp~La~~vi~~LL 354 (534)
-++..|+...++|-.+.++.-. ..+-.+.+..|-+ ||+.++....++..
T Consensus 455 n~me~fiv~hv~P~f~s~ygfL-~Srace~is~~eeDfkd~~ill~aye~t~ 505 (970)
T COG5656 455 NVMEYFIVNHVIPAFRSNYGFL-KSRACEFISTIEEDFKDNGILLEAYENTH 505 (970)
T ss_pred HHHHHHHHHHhhHhhcCcccch-HHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 6899999999999999986544 3444555555522 67777666655544
No 28
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.43 E-value=8.7e+02 Score=30.46 Aligned_cols=250 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhh---
Q 041798 201 VYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIF--- 277 (534)
Q Consensus 201 VYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~--- 277 (534)
.|++|..+|.....+.++.+.+|. ++.-|-+-.----------++-++-||.--..-+|.+|++.....-..++
T Consensus 94 ~~~~l~~~~~~~stn~svlr~~is---cL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 94 TLNILAPFLTAESTNGSVLRLAIS---CLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHHhhhcccchHHHHHHH---HHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCC
Q ss_pred -------------------ccCCcCChHHHHHHHHH--HHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHH
Q 041798 278 -------------------ETEKHNGIAELLEILGS--IINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCIT 336 (534)
Q Consensus 278 -------------------e~e~hnGIaELLeIlgS--IInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~ 336 (534)
.-+..-|-+|.-+++.+ ++.+--.-+...-..-+-.+++-..+......-..-|.-.-.
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~ 250 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHS 250 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q ss_pred HHHHhccCcHHHHHHHhhc----------------cCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhC
Q 041798 337 QFVEKDFKLADTVIRGLLK----------------YWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLN 400 (534)
Q Consensus 337 qFveKDp~La~~vi~~LLk----------------~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~ 400 (534)
.|-.+-+.|+.....-+|. +|++. ++|...++-..+++.-..=+..+|.....|..
T Consensus 251 lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v--------~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~ 322 (1176)
T KOG1248|consen 251 LFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKV--------LNEAHDILATLQEEKALQALPRLFSLFFTILE 322 (1176)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHH--------HHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHh
Q ss_pred CCCHHHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 041798 401 SSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLA 474 (534)
Q Consensus 401 S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~ 474 (534)
|+|-+++-.|-+...+ |.+.+-.+.+.+.........+.=...|-..+..++. .+||+|..
T Consensus 323 s~~~e~~q~a~q~l~~------il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s-------~~fek~G~ 383 (1176)
T KOG1248|consen 323 SLIEELVQAASQSLKE------ILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQILS-------ALFEKCGE 383 (1176)
T ss_pred cccHHHHHHHHHHHHH------HhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHHH-------HHHHHhhh
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=37.27 E-value=4.7e+02 Score=26.77 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=42.2
Q ss_pred hcccCHHHHHHHHhhcC-CCChHHHHHHHHHHHHHhhcccCchHHHHHH-HHHHHHHhh
Q 041798 220 KRYIDHSFVLRLLDLFD-SEDQREREYLKTILHRIYGKFMVHRPFIRKA-INNIFYRFI 276 (534)
Q Consensus 220 k~~id~~Fi~~Ll~lfd-SeDpRERd~LktiLhrIY~Kf~~~R~fIRk~-Innif~~FI 276 (534)
+.+++...+.+|+.+++ ++||-.++....++... ..|...|.+||.. .-.++...+
T Consensus 6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL 63 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLL 63 (254)
T ss_pred cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHc
Confidence 35688888999999999 68999999999888875 5677777777762 223444444
No 30
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=36.80 E-value=1e+02 Score=28.81 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhH-HHHHHHHHHhccC
Q 041798 285 IAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQL-SYCITQFVEKDFK 344 (534)
Q Consensus 285 IaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL-~yci~qFveKDp~ 344 (534)
..-.|+|+..++..|..-||.|-..|+..++.|+..++..+.=++.+ ..++..++ +||.
T Consensus 90 ~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~-~~p~ 149 (168)
T PF12783_consen 90 FSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC-KDPQ 149 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH-hChh
Confidence 34568899999999999999999999999999888777653224443 34444444 3554
No 31
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=36.75 E-value=1.1e+02 Score=27.98 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=54.7
Q ss_pred HHHHHHhC-ChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhc------chHHHHHHhhccccccccccHHHHHh-hh
Q 041798 372 LEEVLEAT-QAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWN------NDHIRNLINLNRKVILPIIFPALERN-TR 443 (534)
Q Consensus 372 leeILe~~-~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~IlPii~paL~~~-sk 443 (534)
|.+|...+ +.++|..||.-|.+||... ..+...+-.||.+.. .+.++.-+.++...| ..+-.--|-. ..
T Consensus 22 m~eIa~~t~~~~~~~~Im~~l~kRL~~~--~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i-~~L~~F~~~d~~g 98 (123)
T cd03571 22 MAEIARATYNYVEFQEIMSMLWKRLNDK--GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYII-RTLKDFQYIDENG 98 (123)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHH-HhhccceeeCCCC
Confidence 44555544 6788999999999999865 567778888886652 233333333333222 1110000101 12
Q ss_pred hcchHHHHHHHHHHHHHHHH
Q 041798 444 GHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 444 ~HWn~~Vr~la~~vlkil~e 463 (534)
.-|-..||..|.+++.+|.|
T Consensus 99 ~d~G~~VR~ka~~i~~Ll~D 118 (123)
T cd03571 99 KDQGINVREKAKEILELLED 118 (123)
T ss_pred CchhHHHHHHHHHHHHHhCC
Confidence 35999999999999998865
No 32
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=33.77 E-value=3.8e+02 Score=24.95 Aligned_cols=79 Identities=10% Similarity=0.084 Sum_probs=59.4
Q ss_pred HHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHH-HHHHHHHHHhhC------CCCHHHHH
Q 041798 336 TQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCM-VPLFRQIGRCLN------SSHFQVAE 408 (534)
Q Consensus 336 ~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~-~pLF~~la~cl~------S~hfqVAE 408 (534)
...+..+|.-+...++.|.|-=-..|+.-++.-|..++.++..|...--..+. ......+.+.++ ..|..|-+
T Consensus 26 cD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~ 105 (139)
T cd03567 26 CEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKT 105 (139)
T ss_pred HHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHH
Confidence 34567889888999999998888888888889999999999988876555544 334445555553 36889999
Q ss_pred HHHHhh
Q 041798 409 RALFLW 414 (534)
Q Consensus 409 rAL~~w 414 (534)
+.|.+.
T Consensus 106 kil~li 111 (139)
T cd03567 106 KIIELL 111 (139)
T ss_pred HHHHHH
Confidence 987553
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=33.49 E-value=9e+02 Score=28.87 Aligned_cols=136 Identities=9% Similarity=0.145 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCc--ccchhhHHHHHHHHHHhcc
Q 041798 266 KAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCV--SMYHQQLSYCITQFVEKDF 343 (534)
Q Consensus 266 k~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~--~~y~~qL~yci~qFveKDp 343 (534)
..+-+.+.+++..... =+.|.+.++..|++.+. - .+ .+.+.+-.++. ..+ +.=..-+.+++.+|.+.-+
T Consensus 404 ~~cV~~Ll~ll~~~~~--~v~e~i~vik~IlrkyP--~--~~--il~~L~~~~~~-~~i~e~~AKaaiiWILGEy~~~I~ 474 (746)
T PTZ00429 404 PDCANLLLQIVDRRPE--LLPQVVTAAKDIVRKYP--E--LL--MLDTLVTDYGA-DEVVEEEAKVSLLWMLGEYCDFIE 474 (746)
T ss_pred HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHCc--c--HH--HHHHHHHhhcc-cccccHHHHHHHHHHHHhhHhhHh
Confidence 3334555566633222 25677777777777652 1 11 11121111110 111 0112345667788876544
Q ss_pred CcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q 041798 344 KLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLW 414 (534)
Q Consensus 344 ~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w 414 (534)
. +..+++.+++.|---++.=+...|.-...++-.. |.+.+..+..+|+..+ -.+.+..|=.||.++|
T Consensus 475 ~-a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~-p~~~~~~l~~vL~~~t--~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 475 N-GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD-PQGMEPQLNRVLETVT--THSDDPDVRDRAFAYW 541 (746)
T ss_pred h-HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHH--hcCCChhHHHHHHHHH
Confidence 3 6778877888887766555555666666665544 4444554444444332 2468899999999999
No 34
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=32.70 E-value=4.1e+02 Score=29.45 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHhccCcHH--HHHHHhhccCCC--CCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhC
Q 041798 329 QQLSYCITQFVEKDFKLAD--TVIRGLLKYWPL--TNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLN 400 (534)
Q Consensus 329 ~qL~yci~qFveKDp~La~--~vi~~LLk~WP~--tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~ 400 (534)
+.|...+..|++|+|.... .-+.+++...-+ ++-.-+.--.+.++.|++.++.+.....+..+|..+-.-++
T Consensus 177 PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 177 PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 4667788889999988652 222333322222 22223455568899999999998877666666655544444
No 35
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=31.05 E-value=5.8e+02 Score=25.94 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=11.7
Q ss_pred cCHHHHHHHHhhcCCCChHHHHHH
Q 041798 223 IDHSFVLRLLDLFDSEDQREREYL 246 (534)
Q Consensus 223 id~~Fi~~Ll~lfdSeDpRERd~L 246 (534)
.-..++.++++... +.+|+.+
T Consensus 92 ~g~~vlqkll~~~~---~~~~~~i 112 (322)
T cd07920 92 YGCRVIQKLLESIS---EEQISLL 112 (322)
T ss_pred hhHHHHHHHHHhcC---HHHHHHH
Confidence 44456667777665 4444443
No 36
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=30.93 E-value=2.2e+02 Score=26.36 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhh-
Q 041798 198 LQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFI- 276 (534)
Q Consensus 198 LqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI- 276 (534)
...|..+|.+|+.+-+ ...|+..+...+++...+.|..+| ...++.++.+.......+.+.+-..|+++.
T Consensus 56 ~~~va~~lK~~Lr~Lp------~pli~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~ 126 (174)
T smart00324 56 VHDVAGLLKLFLRELP------EPLIPYELYEEFIEAAKVEDETER---LRALRELISLLPPANRATLRYLLAHLNRVAE 126 (174)
T ss_pred HHHHHHHHHHHHHhCC------CccCCHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 3478888888887532 246888888888888887777665 233344454544433333334444555544
Q ss_pred hccCCcCChHHHHHHHHHHH
Q 041798 277 FETEKHNGIAELLEILGSII 296 (534)
Q Consensus 277 ~e~e~hnGIaELLeIlgSII 296 (534)
++..+.-++.-|-.++|..+
T Consensus 127 ~~~~n~M~~~nLa~~f~P~l 146 (174)
T smart00324 127 HSEENKMTARNLAIVFGPTL 146 (174)
T ss_pred ccccCCCCHHHHHHHHhccc
Confidence 22233444555555555444
No 37
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=30.07 E-value=83 Score=34.79 Aligned_cols=167 Identities=14% Similarity=0.262 Sum_probs=86.6
Q ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHhhhcccCCCCCCCC----CCCCCCCCCCCCc--------------cCCC
Q 041798 133 QTLLELVDYM-SSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDN----KGLDMYDPEEEEP--------------AMEP 193 (534)
Q Consensus 133 ~tL~EL~~~v-~~~~~~lte~v~~~i~~Mi~~NIFR~lPp~~~~~----~~~~~~d~eedep--------------~~e~ 193 (534)
..|...+..| ++.-.-+.+-+++-+-.|++.+-=-++|+....= ..+..++.....| -.-.
T Consensus 116 ~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~ 195 (435)
T PF03378_consen 116 EALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIV 195 (435)
T ss_dssp HHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhc
Confidence 3444444444 3344557777777777777776522344332100 0000111111112 1234
Q ss_pred CCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCch--HHHHHHHHHH
Q 041798 194 AWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHR--PFIRKAINNI 271 (534)
Q Consensus 194 aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R--~fIRk~Inni 271 (534)
+..||+-|+.+|.+.+.|...|..-. ..+..++..+.-+ .=..|+++|+.-++.+....| .|+++-+ +
T Consensus 196 ~~~~l~~iLgvFQkLi~sk~~D~~gF------~LL~~iv~~~p~~--~l~~yl~~I~~lll~RLq~skT~kf~~~fv--~ 265 (435)
T PF03378_consen 196 ANNQLEPILGVFQKLIASKANDHYGF------DLLESIVENLPPE--ALEPYLKQIFTLLLTRLQSSKTEKFVKRFV--V 265 (435)
T ss_dssp --S-CHHHHHHHHHHHT-TTCHHHHH------HHHHHHHHHS-HH--HHGGGHHHHHHHHHHHHHHC--HHHHHHHH--H
T ss_pred chhhHHHHHHHHHHHHCCCCcchHHH------HHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHhhCCcHHHHHHHH--H
Confidence 56899999999999999976664321 2444555555321 124578888888887766555 4666555 3
Q ss_pred HHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccC
Q 041798 272 FYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLH 319 (534)
Q Consensus 272 f~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLH 319 (534)
|+.++- ...|...+.+++.+|-.|. ...++.++++|-.
T Consensus 266 F~~~~~---~~~g~~~li~~id~IQ~gl-------F~~il~~v~lp~~ 303 (435)
T PF03378_consen 266 FLSLFA---IKYGPDFLIQTIDSIQPGL-------FGMILEKVWLPDL 303 (435)
T ss_dssp HHHHHH---HHH-HHHHHHHHHTTSTTH-------HHHHHHHTHHHHG
T ss_pred HHHHHH---HHcCHHHHHHHHHHhcCCc-------HHHHHHHHhcCch
Confidence 333221 1139999999998888775 2345677788844
No 38
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.31 E-value=5.1e+02 Score=29.10 Aligned_cols=99 Identities=14% Similarity=0.287 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhCCc--CCHHHHhcccCHHHHHHHHhhcC-CCChHHHHHHHHHHHHHhhccc----------CchHHHH
Q 041798 199 QVVYEILLRFVASPE--TDAKLAKRYIDHSFVLRLLDLFD-SEDQREREYLKTILHRIYGKFM----------VHRPFIR 265 (534)
Q Consensus 199 qlVYeillrfv~s~~--~d~~~ak~~id~~Fi~~Ll~lfd-SeDpRERd~LktiLhrIY~Kf~----------~~R~fIR 265 (534)
..+-|+|+|+|.... ....+..=.-++.+|.+|++.|+ +.|+......-.+|..|..... +-.+..|
T Consensus 33 ~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r 112 (475)
T PF04499_consen 33 PAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTR 112 (475)
T ss_pred cHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHH
Confidence 468899999998543 22233333346889999999998 4555555556666666555322 1123332
Q ss_pred ----HHHHHHHHHhhhccCCcCChHHHHHHHHHHHh
Q 041798 266 ----KAINNIFYRFIFETEKHNGIAELLEILGSIIN 297 (534)
Q Consensus 266 ----k~Innif~~FI~e~e~hnGIaELLeIlgSIIn 297 (534)
..+-..+..++.+...-.++.-.+.|+-.+|+
T Consensus 113 ~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 113 QLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIR 148 (475)
T ss_pred HHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 33333444555543334555555556666664
No 39
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=27.15 E-value=4.6e+02 Score=24.83 Aligned_cols=87 Identities=14% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 041798 384 FQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 384 f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e 463 (534)
|..++.|....+..|+.+++..|=..|+... ..|+.++.-.+=+.+|..+......- |+.||+.|...+.-+..
T Consensus 19 ~~~~ve~~~~~l~~~L~D~~~~VR~~al~~L-----s~Li~~d~ik~k~~l~~~~l~~l~D~-~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 19 YPNLVEPYLPNLYKCLRDEDPLVRKTALLVL-----SHLILEDMIKVKGQLFSRILKLLVDE-NPEIRSLARSFFSELLK 92 (178)
T ss_pred CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHH-----HHHHHcCceeehhhhhHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Q ss_pred h-cHHHHHHHHHHH
Q 041798 464 A-DQALFDECLARF 476 (534)
Q Consensus 464 ~-D~~lf~~c~~~~ 476 (534)
. +|..+..+.-..
T Consensus 93 ~~~~~~i~~~~~e~ 106 (178)
T PF12717_consen 93 KRNPNIIYNNFPEL 106 (178)
T ss_pred hccchHHHHHHHHH
No 40
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.72 E-value=2.4e+02 Score=26.72 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCChHH-HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHh
Q 041798 226 SFVLRLLDLFDSEDQRE-REYLKTILHRIYGKFMVHRPFIRKAINNIFYRF 275 (534)
Q Consensus 226 ~Fi~~Ll~lfdSeDpRE-Rd~LktiLhrIY~Kf~~~R~fIRk~Innif~~F 275 (534)
.++..|+..+..+||.- .......|.+||..--+.-.+.|......+-.|
T Consensus 67 ~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~ 117 (165)
T PF08167_consen 67 QWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF 117 (165)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH
Confidence 45666777777665544 667777888888766666666777665555444
No 41
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=26.59 E-value=8.6e+02 Score=28.54 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=66.5
Q ss_pred hccCCcCChHHH----HHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHH----hccCcHHH
Q 041798 277 FETEKHNGIAEL----LEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVE----KDFKLADT 348 (534)
Q Consensus 277 ~e~e~hnGIaEL----LeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFve----KDp~La~~ 348 (534)
+.++..--+.|| +.+|.+||+.+-.-... -.+-+...++.+..+..-..-|....+-|...-. .-...++.
T Consensus 561 l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~ 639 (858)
T COG5215 561 LATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASK 639 (858)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555 56788999887654432 2222344455554444223333444343332211 11112333
Q ss_pred HHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCH
Q 041798 349 VIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHF 404 (534)
Q Consensus 349 vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hf 404 (534)
++-||.|---.++++=-..-++.+.++-..+ .++|..+..-+...|..|++|+..
T Consensus 640 fiPyl~~aln~~d~~v~~~avglvgdlantl-~~df~~y~d~~ms~LvQ~lss~~~ 694 (858)
T COG5215 640 FIPYLTRALNCTDRFVLNSAVGLVGDLANTL-GTDFNIYADVLMSSLVQCLSSEAT 694 (858)
T ss_pred hhHHHHHHhcchhHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcChhh
Confidence 4444444433444443333445555554433 568999999999999999999753
No 42
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=26.50 E-value=2.9e+02 Score=26.39 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=18.8
Q ss_pred ccCCCchHHHHHHHHHHHhccCCCC
Q 041798 298 GFALPLKEEHKLFLVRALIPLHKPK 322 (534)
Q Consensus 298 Gfa~PLKeEHk~Fl~rvLlPLHk~k 322 (534)
++-.-+..++...+.+++.||.+..
T Consensus 102 d~l~~lp~~~a~~ll~Al~PLi~~s 126 (158)
T PF14676_consen 102 DYLSFLPGDVAIGLLRALLPLIKFS 126 (158)
T ss_dssp GGTTTS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 3455667788889999999999886
No 43
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=26.41 E-value=52 Score=28.48 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHH
Q 041798 227 FVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFI 264 (534)
Q Consensus 227 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fI 264 (534)
=+.+|+++..+--....++...+|+..|+-|..+|||+
T Consensus 47 kmRkLld~v~akG~~~k~~F~~iL~e~~~~y~~~~~~~ 84 (85)
T cd08324 47 KVRKILDLVQSKGEEVSEYFLYLLQQLADAYVDLRPWL 84 (85)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccc
Confidence 35679999999999999999999999999999999985
No 44
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.39 E-value=1.3e+03 Score=28.68 Aligned_cols=247 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHhcccCH---HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHH
Q 041798 216 AKLAKRYIDH---SFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEIL 292 (534)
Q Consensus 216 ~~~ak~~id~---~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIl 292 (534)
+.+|++-+|. ..+.-|++-..|+|+..|+.---||..+-.-|...-.--...+-.+|.+-+-+....--++ -++-+
T Consensus 105 Aeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~-a~rA~ 183 (1075)
T KOG2171|consen 105 AEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVA-AVRAL 183 (1075)
T ss_pred HHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHH-HHHHH
Q ss_pred HHHHhccCCCchHHHHHHHHHHHhc-----cCCCCCcccch--hhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhH
Q 041798 293 GSIINGFALPLKEEHKLFLVRALIP-----LHKPKCVSMYH--QQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKE 365 (534)
Q Consensus 293 gSIInGfa~PLKeEHk~Fl~rvLlP-----LHk~k~~~~y~--~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KE 365 (534)
++++--.- --+.+++.| +.++| |-..-..+.=. ++...|...|++-.|++..+.+..++.+==.-...|+
T Consensus 184 ~a~~~~~~-~~~~~~~~~--~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~ 260 (1075)
T KOG2171|consen 184 GAFAEYLE-NNKSEVDKF--RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKE 260 (1075)
T ss_pred HHHHHHhc-cchHHHHHH--HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc
Q ss_pred ---------hHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhC-------------------CCCHHHHHHHHHhhcch
Q 041798 366 ---------VMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLN-------------------SSHFQVAERALFLWNND 417 (534)
Q Consensus 366 ---------vlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~-------------------S~hfqVAErAL~~w~N~ 417 (534)
+-||--+.+--..+.-..-. +..+|+-.+..++. ..+..+|++||....
T Consensus 261 l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA-- 337 (1075)
T KOG2171|consen 261 LENSIRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLA-- 337 (1075)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHH--
Q ss_pred HHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 041798 418 HIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLAR 475 (534)
Q Consensus 418 ~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~ 475 (534)
..=..+.++|.+|+.+.+.. .+=+-.-|..+.-++...-|--++.-..-+.+
T Consensus 338 -----~~L~g~~v~p~~~~~l~~~l-~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~ 389 (1075)
T KOG2171|consen 338 -----LHLGGKQVLPPLFEALEAML-QSTEWKERHAALLALSVIAEGCSDVMIGNLPK 389 (1075)
T ss_pred -----hcCChhhehHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=25.04 E-value=3.3e+02 Score=23.72 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhccccc---cccccHHHHHhhhhcchHHHHHHHHHHHHH
Q 041798 384 FQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVI---LPIIFPALERNTRGHWNQAVQSLTLNVRKI 460 (534)
Q Consensus 384 f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~I---lPii~paL~~~sk~HWn~~Vr~la~~vlki 460 (534)
.......|.+-+-.|++.++..|=..|..-.-| +.+..+..+ ++-||++|.+.... =++.||+.|.-+-++
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~n-----i~k~~~~~~l~~f~~IF~~L~kl~~D-~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYN-----ISKVARGEILPYFNEIFDALCKLSAD-PDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 444455555566689999999998888754433 233333333 45677777775532 366777777655554
Q ss_pred H
Q 041798 461 F 461 (534)
Q Consensus 461 l 461 (534)
|
T Consensus 95 l 95 (97)
T PF12755_consen 95 L 95 (97)
T ss_pred h
Confidence 4
No 46
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=25.01 E-value=3.5e+02 Score=31.69 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhCCcCCHHHHhcccC-HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhh-
Q 041798 200 VVYEILLRFVASPETDAKLAKRYID-HSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIF- 277 (534)
Q Consensus 200 lVYeillrfv~s~~~d~~~ak~~id-~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~- 277 (534)
.+=++|.|+ .+++|...+..+. +.-..-++.++=|+|+.=++.-.++|..+|| -.+.+.-|+.-+.+.+-..++
T Consensus 500 ~~~~il~rl---s~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R~e~i~~ll~~~~~~tL~a 575 (727)
T PF12726_consen 500 LISQILERL---SDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGRLEAIQALLQSNFSPTLSA 575 (727)
T ss_pred HHHHHHHHH---hcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHhHHHHHHH
Confidence 344444444 3668877777665 4566778889999999999999999999998 445555555544443332222
Q ss_pred ---------ccCCcCChHHHHHHHHHHHhccCCCch
Q 041798 278 ---------ETEKHNGIAELLEILGSIINGFALPLK 304 (534)
Q Consensus 278 ---------e~e~hnGIaELLeIlgSIInGfa~PLK 304 (534)
+...+....-++.++..||++++-|..
T Consensus 576 i~~~l~~~~~~~~~~p~pr~vr~~~DIi~~Lcdp~~ 611 (727)
T PF12726_consen 576 INWSLRQLTKLKFFEPCPRMVRCLMDIIEVLCDPVS 611 (727)
T ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHHHHHHcCCCC
Confidence 234466677788888888888877754
No 47
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.83 E-value=5.2e+02 Score=23.38 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=58.4
Q ss_pred HHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHH-HHHHHHHHhhC---CCCHHHHHH
Q 041798 334 CITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMV-PLFRQIGRCLN---SSHFQVAER 409 (534)
Q Consensus 334 ci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~-pLF~~la~cl~---S~hfqVAEr 409 (534)
=+...+..++.-+..+++.|.|.==..|+.-+..-|.-++.++..+++.-...+.. .....+.+.+. ..|.+|-++
T Consensus 23 ~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~k 102 (133)
T cd03561 23 ELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREK 102 (133)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 34445667777778888888777777788999999999999999887755444443 44444555554 468999999
Q ss_pred HHHhh
Q 041798 410 ALFLW 414 (534)
Q Consensus 410 AL~~w 414 (534)
++.+.
T Consensus 103 il~ll 107 (133)
T cd03561 103 ALELI 107 (133)
T ss_pred HHHHH
Confidence 88664
No 48
>PF08578 DUF1765: Protein of unknown function (DUF1765); InterPro: IPR013887 This entry represents a conserved region found in hypothetical proteins from fungi, mycetozoa and entamoebidae.
Probab=24.72 E-value=3.6e+02 Score=24.39 Aligned_cols=104 Identities=22% Similarity=0.214 Sum_probs=57.2
Q ss_pred HHHhhccCCCCCChhHhHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHH
Q 041798 350 IRGLLKYWPLTNSSKEVMFLGELEEVLEATQA------AEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLI 423 (534)
Q Consensus 350 i~~LLk~WP~tns~KEvlFL~eleeILe~~~~------~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li 423 (534)
++.+.+==|.-++.+-...++-+++.+..+.. ..|. -.-.++-+-+.++|.|.++--|+|.+.=|- -.++
T Consensus 6 ~~~~~~kTs~yd~~~~~~~~d~l~~~i~~~~~~~~~~~~~~d--w~fwl~~i~~ml~s~n~~~~~r~l~fLyn~--w~~~ 81 (126)
T PF08578_consen 6 LKAIAKKTSIYDSNAVFLLLDLLEEFIFQFDSYNPSLPDFFD--WDFWLDGIRMMLESDNVQSEIRALSFLYNI--WDLF 81 (126)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHHHHHHHHhhcccCCcccC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--HHHc
Confidence 33333333444555555666666666654432 2221 133566677778899999999999544221 2223
Q ss_pred h-hccccc---cccccH-HHHHhhhhcchHHHHHHHHHH
Q 041798 424 N-LNRKVI---LPIIFP-ALERNTRGHWNQAVQSLTLNV 457 (534)
Q Consensus 424 ~-~n~~~I---lPii~p-aL~~~sk~HWn~~Vr~la~~v 457 (534)
. +.++.+ .-.++. .....-=.|||+.||..=...
T Consensus 82 ~~~~~~~~~~~~~~Ll~~~~f~~lF~HW~~~VR~~f~~L 120 (126)
T PF08578_consen 82 PSESRRKISLCLDWLLSEKWFFKLFLHWSPMVRSYFHRL 120 (126)
T ss_pred ChhHHHHHHHHHHHHcCchHHHHHHhcCCHHHHHHHHHH
Confidence 2 222222 344444 333334579999999865544
No 49
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=24.38 E-value=5.8e+02 Score=26.20 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=82.6
Q ss_pred HHHHHHHHhccCCCchHHHH--HHHHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHh
Q 041798 289 LEILGSIINGFALPLKEEHK--LFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEV 366 (534)
Q Consensus 289 LeIlgSIInGfa~PLKeEHk--~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEv 366 (534)
|.|.+........++.+... ..+...++|-........ ...=..|+..|+--|.+++...+.-+++---.....=.+
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~v-R~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAV-RELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44444444444444444322 445566667766665533 233346666666666666666555555444333334444
Q ss_pred HHHHHHHHHHHhCChHHHHHHH--------HHHHHHHHHhhCCCCH-----------------------HHHHHHHHhhc
Q 041798 367 MFLGELEEVLEATQAAEFQRCM--------VPLFRQIGRCLNSSHF-----------------------QVAERALFLWN 415 (534)
Q Consensus 367 lFL~eleeILe~~~~~~f~~i~--------~pLF~~la~cl~S~hf-----------------------qVAErAL~~w~ 415 (534)
.-|+-|-+++-.=+.+.|.... ..+.+.+.+.+.+.+- .|-.+-+..|=
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF 162 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYF 162 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4455555555443333332222 2455555555555442 22222222232
Q ss_pred chHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcH
Q 041798 416 NDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQ 466 (534)
Q Consensus 416 N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~ 466 (534)
|+.-.+ .+.-+.++-+.||+.-..+..| ...+......++..+.+...
T Consensus 163 ~p~t~~--~~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 163 NPSTED--NQRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred CcccCC--cHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCcc
Confidence 222111 0122344555666655544444 45556666666666655543
No 50
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=23.57 E-value=5.2e+02 Score=24.68 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHH------HHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhh
Q 041798 367 MFLGELEEVLEATQAAEFQRCM------VPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINL 425 (534)
Q Consensus 367 lFL~eleeILe~~~~~~f~~i~------~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~ 425 (534)
-+=+.+.+++..++-+++..+. .+.|+.+-+.+.|+.||-.-.+ +|+|+.+..++..
T Consensus 102 g~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~--~~~~~~~~~~~~~ 164 (179)
T PF06757_consen 102 GLNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNA--LWASPEFQRLLNE 164 (179)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHH--HHcCHHHHHHHHH
Confidence 3455666666777777765543 6799999999999999866554 6899998877753
No 51
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=23.41 E-value=2.3e+02 Score=32.80 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=30.9
Q ss_pred ccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHH
Q 041798 342 DFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQR 386 (534)
Q Consensus 342 Dp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~ 386 (534)
+|.|++.+.+.|-.-|+.. |..+..+....++++|++
T Consensus 498 nP~LadlI~e~ige~~i~d--------l~~l~~L~~~a~d~~f~~ 534 (843)
T KOG2099|consen 498 NPGLADLITEKIGEEWITD--------LDQLTKLRKFADDEEFQR 534 (843)
T ss_pred CchHHHHHHHHhhhHhhhh--------HHHHHHHHHhcccHHHHH
Confidence 6899999988888888766 788888888888888876
No 52
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=23.14 E-value=9.3e+02 Score=29.86 Aligned_cols=130 Identities=14% Similarity=0.144 Sum_probs=90.5
Q ss_pred HHHHhhccCCC--CCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhc
Q 041798 349 VIRGLLKYWPL--TNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLN 426 (534)
Q Consensus 349 vi~~LLk~WP~--tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n 426 (534)
.+-|+..-.|- +.+.+.+.-|.-+-.+|-..+|+.|.+...++-..+..|+.-+.+||+-+||.+. ..++..|..-
T Consensus 477 lvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~--~~lvkvirpl 554 (1233)
T KOG1824|consen 477 LVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVC--QQLVKVIRPL 554 (1233)
T ss_pred cchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHH--HHHHHHhccc
Confidence 34455555553 4456777778888888889999999999999999999999999999999999887 3566666432
Q ss_pred c--------ccccccccHHHHHhhhhcchHHHHHHHHHHHHH----HHHhcHHHHHHHHHHHHHHH
Q 041798 427 R--------KVILPIIFPALERNTRGHWNQAVQSLTLNVRKI----FSDADQALFDECLARFQEDE 480 (534)
Q Consensus 427 ~--------~~IlPii~paL~~~sk~HWn~~Vr~la~~vlki----l~e~D~~lf~~c~~~~~~~~ 480 (534)
. ..+=+++--.+.+-..+--++.||..|..++.+ |-|++..--..|+.-+-+.-
T Consensus 555 ~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl 620 (1233)
T KOG1824|consen 555 QPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL 620 (1233)
T ss_pred CCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 2 222233334445555667789999988877654 34555555555666555433
No 53
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.06 E-value=1.5e+03 Score=28.02 Aligned_cols=220 Identities=17% Similarity=0.190 Sum_probs=112.1
Q ss_pred cchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHh
Q 041798 196 PHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRF 275 (534)
Q Consensus 196 pHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~F 275 (534)
+-++.+|+||.++.+++.-.....+++=--.-+..|.+.+.-..|-+-..=.-+.--++--|...=-|+|...-.++-+|
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 45789999999998874322222222222234556666666666643333333344455455555556777776777666
Q ss_pred hhccCCcCChHHHHHHHHHHHhcc----CCCchHHHHHHHH-------------HHHhc------cCCCCCcccchhhHH
Q 041798 276 IFETEKHNGIAELLEILGSIINGF----ALPLKEEHKLFLV-------------RALIP------LHKPKCVSMYHQQLS 332 (534)
Q Consensus 276 I~e~e~hnGIaELLeIlgSIInGf----a~PLKeEHk~Fl~-------------rvLlP------LHk~k~~~~y~~qL~ 332 (534)
-.+ .+.--.-+++++....|++ -+|.+-|-..=|+ +..+| ||-.+-+ =...|+
T Consensus 490 ~~~--df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~--End~Lt 565 (1010)
T KOG1991|consen 490 SSI--DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV--ENDDLT 565 (1010)
T ss_pred Hhc--cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc--chhHHH
Confidence 533 2222233455555555544 4787754322111 11111 0111111 123455
Q ss_pred HHHHHHHHhccC------------cHHHHHHHhhcc--CCCCCChhHhH---HHHHHHHHHHhCC--hHHHHHHHHHHHH
Q 041798 333 YCITQFVEKDFK------------LADTVIRGLLKY--WPLTNSSKEVM---FLGELEEVLEATQ--AAEFQRCMVPLFR 393 (534)
Q Consensus 333 yci~qFveKDp~------------La~~vi~~LLk~--WP~tns~KEvl---FL~eleeILe~~~--~~~f~~i~~pLF~ 393 (534)
.|+-.++.+-+. |+..+++-+-.- ---+..-|++. +|+-|+.||..++ |+-++.+..-+..
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555554332 333344443320 11233467665 6777777787774 5555666555566
Q ss_pred HHHHhhCCCCHHHHHHHHHhhcchHH
Q 041798 394 QIGRCLNSSHFQVAERALFLWNNDHI 419 (534)
Q Consensus 394 ~la~cl~S~hfqVAErAL~~w~N~~i 419 (534)
.+...+.+.=..+-|.++.+-++-++
T Consensus 646 vi~~iL~~~i~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 646 VIGFILKNDITDFYEELLEIVSSLTF 671 (1010)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 66666666666666666665555444
No 54
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.45 E-value=2e+02 Score=34.14 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=45.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhcc---hHHH------HHHhhccc------------cccccccHHHHHhh----hh
Q 041798 390 PLFRQIGRCLNSSHFQVAERALFLWNN---DHIR------NLINLNRK------------VILPIIFPALERNT----RG 444 (534)
Q Consensus 390 pLF~~la~cl~S~hfqVAErAL~~w~N---~~i~------~li~~n~~------------~IlPii~paL~~~s----k~ 444 (534)
.||.+....+.|+|-+||-.|+.||.+ |.+- ..+.++.. .++|.+...|.+-- ..
T Consensus 259 alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~D 338 (859)
T KOG1241|consen 259 ALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDD 338 (859)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccc
Confidence 399999999999999999999999994 3332 22233333 56677766666521 22
Q ss_pred cchHHHHHHHHHHHHH
Q 041798 445 HWNQAVQSLTLNVRKI 460 (534)
Q Consensus 445 HWn~~Vr~la~~vlki 460 (534)
-||.. ..|-.+|.+
T Consensus 339 dWnp~--kAAg~CL~l 352 (859)
T KOG1241|consen 339 DWNPA--KAAGVCLML 352 (859)
T ss_pred cCcHH--HHHHHHHHH
Confidence 49965 344455543
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=21.91 E-value=3.6e+02 Score=22.29 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhcchHH-----HHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHH
Q 041798 390 PLFRQIGRCLNSSHFQVAERALFLWNNDHI-----RNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIF 461 (534)
Q Consensus 390 pLF~~la~cl~S~hfqVAErAL~~w~N~~i-----~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil 461 (534)
.++..+..++++++..|.+.|+..+.|=-. ...+ ....++|.+...+.. . +..++..+..++.-|
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~g~l~~l~~~l~~----~-~~~~~~~a~~~l~~l 118 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV--LEAGGVPKLVNLLDS----S-NEDIQKNATGALSNL 118 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH--HHCCChHHHHHHHhc----C-CHHHHHHHHHHHHHh
Confidence 677888888899999999999877655211 0001 112234444443332 2 566777777666544
No 56
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=21.63 E-value=2e+02 Score=23.82 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=33.8
Q ss_pred HHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcc
Q 041798 216 AKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKF 257 (534)
Q Consensus 216 ~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 257 (534)
+...+.+++...+..|+.++++.|++=|...-.+|.++-...
T Consensus 39 ~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 39 NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 555666677788889999999999999988888888886543
No 57
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.89 E-value=6.1e+02 Score=24.39 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHh----hccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHH
Q 041798 387 CMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLIN----LNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFS 462 (534)
Q Consensus 387 i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~----~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~ 462 (534)
++..-.+.|-+|.-|++.+|+..|+.+.. ++. -|+...+|.+.. |. .-=|+.|++.|...++.+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~------~il~qGLvnP~~cvp~lIA-L~----ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLE------LILRQGLVNPKQCVPTLIA-LE----TSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HHHhcCCCChHHHHhHhhh-hh----CCCChHHHHHHHHHHHHHH
Confidence 34456677788889999999999997753 232 245566665443 33 3358999999999999999
Q ss_pred HhcHHHHHHHHH
Q 041798 463 DADQALFDECLA 474 (534)
Q Consensus 463 e~D~~lf~~c~~ 474 (534)
+--+.+++....
T Consensus 74 eK~~s~v~~~~~ 85 (187)
T PF12830_consen 74 EKHESLVESRYS 85 (187)
T ss_pred HHhHHHHHHHHH
Confidence 988888876544
No 58
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=20.79 E-value=8e+02 Score=30.12 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=87.3
Q ss_pred HHHHhhccCC-CCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhh---cchHHHHHHh
Q 041798 349 VIRGLLKYWP-LTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLW---NNDHIRNLIN 424 (534)
Q Consensus 349 vi~~LLk~WP-~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w---~N~~i~~li~ 424 (534)
++-.|+.+.- .+.++| -++|.-+..+|..++-+...+-+..|+..|-+|++-+..-|--.++... --+. -.++.
T Consensus 868 ivP~l~~~~~t~~~~~K-~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t 945 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQK-HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQT 945 (1030)
T ss_pred hHHHHHHHhccCCccch-hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc-cccch
Confidence 3344444444 344444 4567788888888888777777888999999999998888733333333 2111 22455
Q ss_pred hccccccccccHHHHHhhhhcch--HHHHHHHHHHHHHHHHh---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041798 425 LNRKVILPIIFPALERNTRGHWN--QAVQSLTLNVRKIFSDA---------DQALFDECLARFQEDEMKEKETQEKREST 493 (534)
Q Consensus 425 ~n~~~IlPii~paL~~~sk~HWn--~~Vr~la~~vlkil~e~---------D~~lf~~c~~~~~~~~~~~~~~~~~r~~~ 493 (534)
.+-.+++|. +...++.|=| ..||..|.++|.+|-+. -|++-.....-..+.+..-.++....+..
T Consensus 946 ~~~~Tlvp~----lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 946 EHLSTLVPY----LLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHhHHHHH----HHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 555565554 4555566655 89999999999999982 22232222222223333334444555778
Q ss_pred HHHH
Q 041798 494 WKRL 497 (534)
Q Consensus 494 W~~l 497 (534)
|-.|
T Consensus 1022 W~~l 1025 (1030)
T KOG1967|consen 1022 WYML 1025 (1030)
T ss_pred hhhc
Confidence 8765
No 59
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=20.77 E-value=1.4e+03 Score=26.83 Aligned_cols=198 Identities=24% Similarity=0.254 Sum_probs=87.5
Q ss_pred HhhcCCCCh---HHHHHHHHHHH-----HHhhcccC-chHHHHHHHHHHHHHhhhccCCcCC----hHHH------HHHH
Q 041798 232 LDLFDSEDQ---REREYLKTILH-----RIYGKFMV-HRPFIRKAINNIFYRFIFETEKHNG----IAEL------LEIL 292 (534)
Q Consensus 232 l~lfdSeDp---RERd~LktiLh-----rIY~Kf~~-~R~fIRk~Innif~~FI~e~e~hnG----IaEL------LeIl 292 (534)
+.+++-.|+ .|+..+|.+|. |+..+.|. .++-.+.-.+-.|..=+++-..|.+ +.-| +|-+
T Consensus 321 ~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v 400 (650)
T KOG2188|consen 321 FQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDV 400 (650)
T ss_pred hhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHH
Confidence 345666777 99999999887 44443332 2322223333334333333222211 1111 3345
Q ss_pred HHHHhccCCCchH--HH-HHHHHHHHhccCCCCCcccchhhHHH-HHHHHH---HhccCcHHHHHHHhhcc------CCC
Q 041798 293 GSIINGFALPLKE--EH-KLFLVRALIPLHKPKCVSMYHQQLSY-CITQFV---EKDFKLADTVIRGLLKY------WPL 359 (534)
Q Consensus 293 gSIInGfa~PLKe--EH-k~Fl~rvLlPLHk~k~~~~y~~qL~y-ci~qFv---eKDp~La~~vi~~LLk~------WP~ 359 (534)
++||--.+.-++. +| ..+...+| +-.++.++.|..++.. .+..|. +++-.... ++-..+.+ |+-
T Consensus 401 ~~v~eeL~P~~~~LL~~g~~gVv~sL--ia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~-~lL~~~~~~g~~~~~~~ 477 (650)
T KOG2188|consen 401 GSVIEELAPKLSSLLEQGNSGVVASL--IAASARLGSYQDKMLQQLIQAFHAASESKKNILP-CLLFSLTLFGCVGEWFL 477 (650)
T ss_pred HHHHHHHhHHHHHHHHcCCchHhHHH--HHHHHhhchhHHHHHHHHHHHHhcCChhhcchHH-HHHHHhhhccccccccc
Confidence 5666444332221 00 01111222 2355566777776655 444443 23333333 22222222 554
Q ss_pred CCCh--hHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhc--ccccccccc
Q 041798 360 TNSS--KEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLN--RKVILPIIF 435 (534)
Q Consensus 360 tns~--KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~IlPii~ 435 (534)
|.-- +-.+++.|+-. +-.+--+.+..|+-| --+|+-+.+..+.....+|... ++.+=+++-
T Consensus 478 t~~~h~~ga~lle~lv~------------f~k~~i~~litsll~---L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~ 542 (650)
T KOG2188|consen 478 TEKFHQKGAVLLEELVN------------FSKTHIQTLITSLLS---LSEEQILEMSCNGVGSHLIEAVLASKDLGEKIK 542 (650)
T ss_pred HHHHhhchhHHHHHHHh------------hchhhhHHHHHHHHh---hhHHHHHHHhcCCchHHHHHHHHHhccccHHHH
Confidence 4332 33444444331 111222234444443 2355666666666444444322 222334555
Q ss_pred HHHHHhhhhcch
Q 041798 436 PALERNTRGHWN 447 (534)
Q Consensus 436 paL~~~sk~HWn 447 (534)
+-|.....+||-
T Consensus 543 ~kLi~~l~g~~~ 554 (650)
T KOG2188|consen 543 EKLINILDGSFV 554 (650)
T ss_pred HHHHHHhhccch
Confidence 566666667774
No 60
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=20.40 E-value=2.2e+02 Score=26.02 Aligned_cols=52 Identities=15% Similarity=0.290 Sum_probs=40.6
Q ss_pred cchhhHHHHHHHHHHhccCcHHHHH---------------HHhhccCCCCCChhHhHHHHHHHHHHH
Q 041798 326 MYHQQLSYCITQFVEKDFKLADTVI---------------RGLLKYWPLTNSSKEVMFLGELEEVLE 377 (534)
Q Consensus 326 ~y~~qL~yci~qFveKDp~La~~vi---------------~~LLk~WP~tns~KEvlFL~eleeILe 377 (534)
.+..+++.=+..+|+++|.|...+= .-|-+.|-+--+..|+.||.|...++-
T Consensus 38 ~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~V~~~~aT~eQ~~Fi~Ef~~LiK 104 (113)
T PF12290_consen 38 VVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLASVWNQKATNEQIAFIEEFIGLIK 104 (113)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4677888888999999999876332 345578999999999999988776653
Done!