Query 041798
Match_columns 534
No_of_seqs 189 out of 323
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npp_B PP2A, B subunit, serine 100.0 6E-139 2E-143 1111.4 28.9 419 87-507 24-443 (449)
2 3fga_B Serine/threonine-protei 100.0 9E-138 3E-142 1087.7 35.2 401 97-499 1-402 (403)
3 2jak_A Serine/threonine-protei 100.0 3E-123 1E-127 974.7 36.8 356 87-444 36-392 (392)
4 1ibr_B P95, importin beta-1 su 94.8 0.48 1.7E-05 47.8 14.8 221 228-466 3-249 (462)
5 1qgr_A Protein (importin beta 94.5 7.1 0.00024 42.9 25.2 232 227-464 218-480 (876)
6 2bpt_A Importin beta-1 subunit 94.1 8.5 0.00029 42.2 26.3 263 196-463 175-482 (861)
7 2qk2_A LP04448P; mini spindles 93.0 1.9 6.4E-05 40.6 14.3 179 231-414 20-200 (242)
8 2qk1_A Protein STU2; STU2P, XM 92.5 3.4 0.00012 39.9 15.7 180 232-414 22-215 (249)
9 4fdd_A Transportin-1; heat rep 92.0 2.9 9.8E-05 46.8 16.4 226 228-470 15-251 (852)
10 1qgr_A Protein (importin beta 91.7 14 0.00049 40.5 21.3 93 368-462 584-678 (876)
11 2bpt_A Importin beta-1 subunit 91.7 2.4 8.3E-05 46.5 15.1 91 367-461 575-666 (861)
12 2jdq_A Importin alpha-1 subuni 88.3 11 0.00038 37.7 15.6 234 217-463 98-347 (450)
13 4fdd_A Transportin-1; heat rep 86.1 47 0.0016 36.9 24.7 156 348-507 629-789 (852)
14 2x19_B Importin-13; nuclear tr 85.2 21 0.00072 40.2 17.2 202 230-474 690-905 (963)
15 1u6g_C TIP120 protein, CAND1; 84.8 13 0.00045 43.3 15.7 248 128-414 20-279 (1230)
16 2km4_A Regulator of TY1 transp 81.7 3.1 0.00011 37.3 6.9 87 332-418 22-117 (142)
17 1ibr_B P95, importin beta-1 su 81.2 46 0.0016 33.1 17.1 240 196-440 168-458 (462)
18 4b8j_A Importin subunit alpha- 80.4 33 0.0011 35.6 15.4 235 216-464 150-401 (528)
19 1u6g_C TIP120 protein, CAND1; 80.4 31 0.0011 40.1 16.5 100 363-464 492-599 (1230)
20 4fu3_A Regulation of nuclear P 80.1 3.4 0.00012 36.2 6.5 87 330-416 21-113 (135)
21 1wa5_B Importin alpha subunit; 79.6 24 0.00083 36.8 14.1 230 218-462 165-411 (530)
22 2of3_A ZYG-9; multifunctional 74.5 27 0.00091 34.6 11.8 105 369-477 67-177 (266)
23 2vgl_B AP-2 complex subunit be 74.3 21 0.0007 38.4 11.9 175 226-415 353-528 (591)
24 4db6_A Armadillo repeat protei 72.9 50 0.0017 29.2 13.3 182 223-416 9-206 (210)
25 4hxt_A De novo protein OR329; 70.0 42 0.0014 30.3 11.4 190 216-416 34-238 (252)
26 1wa5_B Importin alpha subunit; 68.6 57 0.002 33.9 13.5 72 389-467 256-332 (530)
27 1w63_A Adapter-related protein 66.3 1.5E+02 0.005 32.0 18.5 162 287-467 404-580 (618)
28 2qk1_A Protein STU2; STU2P, XM 64.1 33 0.0011 32.9 9.8 87 371-463 127-220 (249)
29 1sz9_A PCF11 protein; RNA poly 62.4 16 0.00055 32.8 6.7 90 328-417 23-115 (144)
30 1w63_A Adapter-related protein 61.9 67 0.0023 34.7 12.9 81 329-415 479-573 (618)
31 2jdq_A Importin alpha-1 subuni 60.1 59 0.002 32.3 11.2 69 391-466 193-266 (450)
32 4b8j_A Importin subunit alpha- 59.7 1.6E+02 0.0055 30.2 16.8 225 228-466 76-318 (528)
33 4hxt_A De novo protein OR329; 57.2 1.1E+02 0.0037 27.4 17.2 216 228-465 4-243 (252)
34 4db8_A Armadillo-repeat protei 54.0 77 0.0026 28.8 10.1 185 220-416 48-248 (252)
35 4flb_A Regulation of nuclear P 53.9 31 0.0011 29.9 6.9 87 330-416 22-112 (132)
36 1wa5_C Importin alpha RE-expor 52.0 3E+02 0.01 31.0 22.4 34 225-258 122-155 (960)
37 3tjz_B Coatomer subunit gamma; 48.0 2.4E+02 0.0083 28.8 15.9 159 281-477 59-219 (355)
38 2qk2_A LP04448P; mini spindles 47.7 26 0.0009 32.5 5.9 129 364-503 31-163 (242)
39 3m1i_C Exportin-1; heat repeat 47.0 1.7E+02 0.0057 33.6 13.5 220 223-464 13-264 (1049)
40 1b3u_A Protein (protein phosph 45.9 2.6E+02 0.0089 28.5 15.5 252 196-463 320-587 (588)
41 2vgl_A Adaptor protein complex 44.4 1.7E+02 0.0057 31.8 12.4 83 328-415 493-585 (621)
42 1eyh_A Epsin; superhelix of he 43.1 1E+02 0.0036 27.6 8.8 90 371-463 25-122 (144)
43 3ul1_B Importin subunit alpha- 36.8 3.8E+02 0.013 27.8 14.9 109 215-323 132-245 (510)
44 1vdy_A Hypothetical protein (R 36.2 33 0.0011 30.9 4.2 94 368-465 31-132 (140)
45 3ibv_A Exportin-T; karyopherin 36.0 5.6E+02 0.019 29.5 20.3 109 388-503 330-466 (980)
46 1oks_A RNA polymerase alpha su 35.0 31 0.0011 26.2 3.2 46 290-337 5-50 (56)
47 3m1i_C Exportin-1; heat repeat 34.4 4.5E+02 0.016 30.0 14.5 87 328-415 728-829 (1049)
48 3ibv_A Exportin-T; karyopherin 33.9 52 0.0018 38.1 6.5 160 290-462 65-259 (980)
49 3d9j_A RNA-binding protein 16; 29.3 1.1E+02 0.0037 27.2 6.6 86 330-416 24-119 (145)
50 3onk_A Epsin-3, ENT3; helix, p 28.9 1.2E+02 0.0043 27.3 6.9 90 371-463 31-129 (150)
51 2vgl_B AP-2 complex subunit be 27.9 5.6E+02 0.019 27.1 16.1 110 129-277 28-150 (591)
52 3gs3_A Symplekin, LD45768P; he 27.9 3.2E+02 0.011 26.6 10.2 95 336-450 41-143 (257)
53 3u0r_A Apoptosis inhibitor 5; 27.6 6.1E+02 0.021 27.4 19.7 58 344-401 260-323 (507)
54 4db8_A Armadillo-repeat protei 26.9 3.5E+02 0.012 24.3 14.0 71 391-468 139-214 (252)
55 1wa5_C Importin alpha RE-expor 26.6 7.2E+02 0.025 27.9 18.5 71 302-377 77-152 (960)
56 3gjx_A Exportin-1; transport, 25.5 4.2E+02 0.015 31.1 12.3 32 223-254 25-56 (1073)
57 3b2a_A TON_1937, putative unch 24.9 4.4E+02 0.015 26.0 10.3 179 224-415 31-214 (265)
58 3tpo_A Importin subunit alpha- 24.8 5.9E+02 0.02 26.3 19.0 195 215-415 151-360 (529)
59 1xqr_A HSPBP1 protein; armadil 24.5 5E+02 0.017 25.3 17.2 61 197-261 56-117 (296)
60 2x1g_F Cadmus; transport prote 24.0 7.8E+02 0.027 27.4 20.4 215 194-414 540-809 (971)
61 1x5b_A Signal transducing adap 20.9 3.9E+02 0.013 24.0 8.7 77 335-414 39-120 (163)
No 1
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=5.7e-139 Score=1111.44 Aligned_cols=419 Identities=55% Similarity=0.985 Sum_probs=382.4
Q ss_pred cccCCCCCCCCCCCcHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhh
Q 041798 87 YEALPSFKDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNL 165 (534)
Q Consensus 87 ~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NI 165 (534)
+++||+|+|||++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++|+++++||++||
T Consensus 24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 103 (449)
T 2npp_B 24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 103 (449)
T ss_dssp --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHH
Q 041798 166 FRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREY 245 (534)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~ 245 (534)
||++||.+++++ .+||+|||||++||+|||||+||++|+|||+|++|++++||+|||++||++|+++||||||||||+
T Consensus 104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 181 (449)
T 2npp_B 104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181 (449)
T ss_dssp CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999887654 379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcc
Q 041798 246 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVS 325 (534)
Q Consensus 246 LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~ 325 (534)
||+|||||||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.||.+||||||++++++
T Consensus 182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~ 261 (449)
T 2npp_B 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 261 (449)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHH
Q 041798 326 MYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQ 405 (534)
Q Consensus 326 ~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfq 405 (534)
.||+||+||++||++|||+|++.|++||+||||+||++|||+||+||++||+.++|++|+++++|||++||+|++|+|||
T Consensus 262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq 341 (449)
T 2npp_B 262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 341 (449)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 041798 406 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKE 485 (534)
Q Consensus 406 VAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~~~ 485 (534)
||||||++|+|++|+++|++|++.|+|+|||+|++++++|||++||++|++|+++|||||+++|++|+++|+++++++++
T Consensus 342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~ 421 (449)
T 2npp_B 342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL 421 (449)
T ss_dssp HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 041798 486 TQEKRESTWKRLEDLAASRAVS 507 (534)
Q Consensus 486 ~~~~r~~~W~~l~~~A~~~~~~ 507 (534)
++++|+++|++|+++|++++..
T Consensus 422 ~~~~r~~~W~~i~~~A~~~~~~ 443 (449)
T 2npp_B 422 KMKEREEAWVKIENLAKANPQV 443 (449)
T ss_dssp TSCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999988753
No 2
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=9.4e-138 Score=1087.74 Aligned_cols=401 Identities=56% Similarity=1.018 Sum_probs=395.2
Q ss_pred CCCCcHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhhcccCCCCCCC
Q 041798 97 PSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSD 175 (534)
Q Consensus 97 ~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NIFR~lPp~~~~ 175 (534)
|++||++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++|+++++||++||||++||.+++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 6889999999999999999999 899999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 041798 176 NKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYG 255 (534)
Q Consensus 176 ~~~~~~~d~eedep~~e~aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~ 255 (534)
++ .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+|||+||||||
T Consensus 81 ~~--~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~ 158 (403)
T 3fga_B 81 TG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG 158 (403)
T ss_dssp CS--TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cc--ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 54 3799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHH
Q 041798 256 KFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCI 335 (534)
Q Consensus 256 Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci 335 (534)
||+++|+|||++|||+|++||||+++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||+||+||+
T Consensus 159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv 238 (403)
T 3fga_B 159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238 (403)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhc
Q 041798 336 TQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWN 415 (534)
Q Consensus 336 ~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~ 415 (534)
+||++|||+|++.|++||+||||+|||+|||+||+||++||+.++|++|++++.|+|++||+|++|+|||||||||++|+
T Consensus 239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041798 416 NDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWK 495 (534)
Q Consensus 416 N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~ 495 (534)
|++|+++|++|++.|+|+|+|+|++++++|||++||++|++|+++|||||+++|++|+++|+++++++++++++|+++|+
T Consensus 319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~ 398 (403)
T 3fga_B 319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV 398 (403)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 041798 496 RLED 499 (534)
Q Consensus 496 ~l~~ 499 (534)
+||+
T Consensus 399 ~~~~ 402 (403)
T 3fga_B 399 KIEN 402 (403)
T ss_dssp TCSC
T ss_pred HHhc
Confidence 9874
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=3e-123 Score=974.69 Aligned_cols=356 Identities=58% Similarity=1.023 Sum_probs=325.2
Q ss_pred cccCCCCCCCCCCCcHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhh
Q 041798 87 YEALPSFKDVPSAEKPNLFIRKLNMCCVIFDF-NDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNL 165 (534)
Q Consensus 87 ~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NI 165 (534)
+++||+|+|+|++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++|+++++||++||
T Consensus 36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 115 (392)
T 2jak_A 36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 115 (392)
T ss_dssp ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHH
Q 041798 166 FRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREY 245 (534)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~ 245 (534)
||++||.+++++ .+||+|||||++|++|||||+||++|+||++|+++++++||+|||++||.+|+++||||||||||+
T Consensus 116 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 193 (392)
T 2jak_A 116 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 193 (392)
T ss_dssp CSCCCC-----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCCCCCccc--ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999877654 379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcc
Q 041798 246 LKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVS 325 (534)
Q Consensus 246 LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~ 325 (534)
||++||||||||+++|+|||++|+|+|++||||+++||||+|||||+||||||||+|||+||++||.+|||||||+++++
T Consensus 194 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~ 273 (392)
T 2jak_A 194 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 273 (392)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHH
Q 041798 326 MYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQ 405 (534)
Q Consensus 326 ~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfq 405 (534)
.||+||+||++||++|||+|++.|++||+||||+||++|||+||+||++||+.+++++|+++++|||++||+|++|+|||
T Consensus 274 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfq 353 (392)
T 2jak_A 274 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 353 (392)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhh
Q 041798 406 VAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRG 444 (534)
Q Consensus 406 VAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~ 444 (534)
||||||++|+|++|+++|++|+++|+|+|||+|++++++
T Consensus 354 VAErAL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 354 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHHHHHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHHHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 999999999999999999999999999999999999874
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.79 E-value=0.48 Score=47.82 Aligned_cols=221 Identities=11% Similarity=0.036 Sum_probs=123.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhc-ccC-------------chHHHHHHHHHHHHHhhhccCCcCChHHHHHHHH
Q 041798 228 VLRLLDLFDSEDQREREYLKTILHRIYGK-FMV-------------HRPFIRKAINNIFYRFIFETEKHNGIAELLEILG 293 (534)
Q Consensus 228 i~~Ll~lfdSeDpRERd~LktiLhrIY~K-f~~-------------~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlg 293 (534)
+.++|..+.|+|+..|......|..+... ..+ ..+-+|+...-.|-+++..... .+-.+.
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~-~~~~~~----- 76 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP-DIKAQY----- 76 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSH-HHHHHH-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccch-HHHHHH-----
Confidence 45677778888988887777776664431 111 1223333333333333311000 000000
Q ss_pred HHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhc------cCcHHHHHHHhhccCCCC--CChhH
Q 041798 294 SIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKD------FKLADTVIRGLLKYWPLT--NSSKE 365 (534)
Q Consensus 294 SIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKD------p~La~~vi~~LLk~WP~t--ns~KE 365 (534)
.+.-..+.++.+..+...|+++.....-.. .++..|+..+...+ |.+...++..+- -. +....
T Consensus 77 ---~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r 147 (462)
T 1ibr_B 77 ---QQRWLAIDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMK 147 (462)
T ss_dssp ---HHHHHTSCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHH
T ss_pred ---HhhhhcCCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHH
Confidence 000123667788888888999877765444 78999998887654 334444443332 22 33334
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHhhcc--hHHHHHHhhccccccccccHHHHHh
Q 041798 366 VMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSS--HFQVAERALFLWNN--DHIRNLINLNRKVILPIIFPALERN 441 (534)
Q Consensus 366 vlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~--hfqVAErAL~~w~N--~~i~~li~~n~~~IlPii~paL~~~ 441 (534)
..-+.-+..+.+...++.+......++..+..+++++ +..|-..|+..+.+ +.+...+.. ....+.+.+.|.+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK--ESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHh
Confidence 4556677777776656666777788999999999998 78777777655433 111111110 00112234444443
Q ss_pred hhhcchHHHHHHHHHHHHHHHHhcH
Q 041798 442 TRGHWNQAVQSLTLNVRKIFSDADQ 466 (534)
Q Consensus 442 sk~HWn~~Vr~la~~vlkil~e~D~ 466 (534)
. .+=+..+|..+..++..+.+..+
T Consensus 226 ~-~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 226 T-QCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp T-TCSSHHHHHHHHHHHHHHHHHCG
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 33356888888888887776554
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.48 E-value=7.1 Score=42.89 Aligned_cols=232 Identities=11% Similarity=0.068 Sum_probs=125.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccC-----
Q 041798 227 FVLRLLDLFDSEDQREREYLKTILHRIYGKFMV-HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA----- 300 (534)
Q Consensus 227 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa----- 300 (534)
++..|...+.++|++.|...-.+|.++...+.. .++++.+.+-..+...+.. ....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 455566677888999998888888777765543 3455552222233222211 111113345666655553210
Q ss_pred ------------CCch---HHHHHHHHHHHhccCCCC-------CcccchhhHHHHHHHHHHhcc-CcHHHHHHHhhccC
Q 041798 301 ------------LPLK---EEHKLFLVRALIPLHKPK-------CVSMYHQQLSYCITQFVEKDF-KLADTVIRGLLKYW 357 (534)
Q Consensus 301 ------------~PLK---eEHk~Fl~rvLlPLHk~k-------~~~~y~~qL~yci~qFveKDp-~La~~vi~~LLk~W 357 (534)
.+.. ..|..-+...++.+.... .. .....-..|+....+..+ .+...++..+....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l 375 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHT
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHc
Confidence 0111 111111223333333211 11 111222344444443322 34555665555444
Q ss_pred CCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhc--ccccccccc
Q 041798 358 PLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLN--RKVILPIIF 435 (534)
Q Consensus 358 P~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~IlPii~ 435 (534)
--.+....-.-+.-+..+.+.+.++.+......+...+-.+++++|..|-.+|+..+.+ +...+... ....++.++
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH--HHHHCGGGTSSTTTHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHhCchhcccHHHHHHHH
Confidence 33333334444556677777777777777777888889999999999999998877653 33333221 234566777
Q ss_pred HHHHHhhhhcchHHHHHHHHHHHHHHHHh
Q 041798 436 PALERNTRGHWNQAVQSLTLNVRKIFSDA 464 (534)
Q Consensus 436 paL~~~sk~HWn~~Vr~la~~vlkil~e~ 464 (534)
+.|.+....+ ..|+..+..++..+.+.
T Consensus 454 ~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 454 QCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 7777766553 67777777776665543
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.07 E-value=8.5 Score=42.19 Aligned_cols=263 Identities=12% Similarity=0.114 Sum_probs=139.7
Q ss_pred cchHHHHHHHHHHhhCCcCCHHH-------Hhc---ccCH--------H-HHHHHHhhcCCCChHHHHHHHHHHHHHhhc
Q 041798 196 PHLQVVYEILLRFVASPETDAKL-------AKR---YIDH--------S-FVLRLLDLFDSEDQREREYLKTILHRIYGK 256 (534)
Q Consensus 196 pHLqlVYeillrfv~s~~~d~~~-------ak~---~id~--------~-Fi~~Ll~lfdSeDpRERd~LktiLhrIY~K 256 (534)
+|..-+...|...+..++.++.+ ... +++. . ++..|...+.++|++.|...-.+|.+|...
T Consensus 175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46667777777666654323211 011 2221 2 444566678899999999888888888776
Q ss_pred ccC-chHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccC-----------CC-----chHHHHHHHHHHHhccC
Q 041798 257 FMV-HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA-----------LP-----LKEEHKLFLVRALIPLH 319 (534)
Q Consensus 257 f~~-~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa-----------~P-----LKeEHk~Fl~rvLlPLH 319 (534)
+.. .++++.+.+-..+...+.+. ...-....+++++.++.... .| .-..+...+..+++...
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 553 34566533334444433221 12223456777777664320 00 00111122333444433
Q ss_pred CCCCc------ccchhhHHHHHHHHHHhcc-CcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHH
Q 041798 320 KPKCV------SMYHQQLSYCITQFVEKDF-KLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLF 392 (534)
Q Consensus 320 k~k~~------~~y~~qL~yci~qFveKDp-~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF 392 (534)
+...- ......-..|+..+....+ .+...++..+...--..+....-.-+.-+..+.+.+.++.+...+..+.
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il 413 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32110 0111122334444433322 3344555554433222222333333555666766666778888888899
Q ss_pred HHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhc--cccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 041798 393 RQIGRCLNSSHFQVAERALFLWNNDHIRNLINLN--RKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 393 ~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n--~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e 463 (534)
..+..++.++|..|-++|+..+. .+...+... ....++.++|.|.+..... ..|+..+..++..+.+
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIG--RIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHH--HHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHH--HHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 99999999999999988876543 233333322 2344566677776655554 5777777777665544
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.03 E-value=1.9 Score=40.62 Aligned_cols=179 Identities=13% Similarity=0.068 Sum_probs=113.6
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcccCc-hHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHH
Q 041798 231 LLDLFDSEDQREREYLKTILHRIYGKFMVH-RPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKL 309 (534)
Q Consensus 231 Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~-R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~ 309 (534)
+++.++|.|.+||...-.-|..+-..+... ..... .+-+.+...+....+.+-....+..+|.+..+....+...+..
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~-~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 666778999999988777766665432110 01111 2223344444212233334567888888887765555443434
Q ss_pred HHHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHH-HHHHH
Q 041798 310 FLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAE-FQRCM 388 (534)
Q Consensus 310 Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~-f~~i~ 388 (534)
+...|+...+.+.-.. .+....++..+++.-+ ...++..|+...--.|+.=...-+.-|..++....|+. +...+
T Consensus 99 -ilp~ll~~l~d~~~~v-r~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 99 -CVPSLLEKFKEKKPNV-VTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp -HHHHHHHGGGCCCHHH-HHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred -HHHHHHHHHcCCCHHH-HHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 4566666666554332 3566777777766533 35666777766665666666677888888888776653 56677
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhh
Q 041798 389 VPLFRQIGRCLNSSHFQVAERALFLW 414 (534)
Q Consensus 389 ~pLF~~la~cl~S~hfqVAErAL~~w 414 (534)
..+...|..|++..+..|=+.|....
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 78888999999999999888887554
No 8
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.53 E-value=3.4 Score=39.87 Aligned_cols=180 Identities=8% Similarity=0.080 Sum_probs=119.8
Q ss_pred HhhcCCCChHHHHHHHHHHHH-Hhhc---ccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccC-CCch-H
Q 041798 232 LDLFDSEDQREREYLKTILHR-IYGK---FMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA-LPLK-E 305 (534)
Q Consensus 232 l~lfdSeDpRERd~LktiLhr-IY~K---f~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa-~PLK-e 305 (534)
.+.+.|.|.+||...-.-|.. +-.. ...+..-. ..+-+.+...+-...+..-....++.+|.+.+|+. ..+. .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 344578999999777766666 6532 32101000 01112223333122233335678899999999997 5665 4
Q ss_pred HHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhc-c----CcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCC
Q 041798 306 EHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKD-F----KLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQ 380 (534)
Q Consensus 306 EHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKD-p----~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~ 380 (534)
-+.. +.-.|+..++-+.-.. .....+++..+++.- | .-.+.++..|+..+-..+++=....+.-|..++....
T Consensus 101 y~~~-llp~ll~~l~dkk~~V-~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVSL-VFTPLLDRTKEKKPSV-IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHH-HHHHHHHGGGCCCHHH-HHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHH-HHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 3433 4566777777665332 457788999998754 2 1134577777777766677777788999999998876
Q ss_pred h--HHHHHHH-HHHHHHHHHhhCCCCHHHHHHHHHhh
Q 041798 381 A--AEFQRCM-VPLFRQIGRCLNSSHFQVAERALFLW 414 (534)
Q Consensus 381 ~--~~f~~i~-~pLF~~la~cl~S~hfqVAErAL~~w 414 (534)
. ..|.+.+ ..+...+.+|+...+-.|=+.|...+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4 8888888 89999999999999999999888665
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.04 E-value=2.9 Score=46.80 Aligned_cols=226 Identities=11% Similarity=0.050 Sum_probs=123.6
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHH-HHHHHHHHHhccCCCchHH
Q 041798 228 VLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAE-LLEILGSIINGFALPLKEE 306 (534)
Q Consensus 228 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaE-LLeIlgSIInGfa~PLKeE 306 (534)
+.++|...-|+|+..|......|..++. .|-.-..+..++... +.....+-- ..-.|...|+..-.++.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-----~p~~~~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 4556666678888888888888776653 111111111111100 111101100 0112223333323356788
Q ss_pred HHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhc-----cCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCCh
Q 041798 307 HKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKD-----FKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQA 381 (534)
Q Consensus 307 Hk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKD-----p~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~ 381 (534)
.+..+...|+++...+. ..-..++..|+......| |.+...++..+ -..+..-.-.-+.-+..+++..++
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLL----DSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----SCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999876543 344668889998888766 33433333333 223332223345555666665543
Q ss_pred HHHH-----HHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHH
Q 041798 382 AEFQ-----RCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLN 456 (534)
Q Consensus 382 ~~f~-----~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~ 456 (534)
. +. .....++..+.+++++++..|-..|+....+ ++....+.-...++-+++.|.+.... =+..||..+..
T Consensus 162 ~-~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d-~~~~vr~~a~~ 237 (852)
T 4fdd_A 162 I-LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGD-EEPEVRKNVCR 237 (852)
T ss_dssp H-HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTC-CCHHHHHHHHH
T ss_pred H-hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 2 22 1245567777788999999998888765542 11111111112234455666654432 26689999999
Q ss_pred HHHHHHHhcHHHHH
Q 041798 457 VRKIFSDADQALFD 470 (534)
Q Consensus 457 vlkil~e~D~~lf~ 470 (534)
++..+.+..++.+.
T Consensus 238 ~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 238 ALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHCHHHHG
T ss_pred HHHHHHHhCHHHHH
Confidence 99998887776543
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.70 E-value=14 Score=40.49 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhc
Q 041798 368 FLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSH--FQVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGH 445 (534)
Q Consensus 368 FL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~h--fqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~H 445 (534)
.+.-+..++..++.+.|......++..+..++++.+ ..|-+.|+..+.+ +.......-...++.++|.|......+
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 345556666666657888888889999999888874 2566777766532 222222222233344556665554433
Q ss_pred chHHHHHHHHHHHHHHH
Q 041798 446 WNQAVQSLTLNVRKIFS 462 (534)
Q Consensus 446 Wn~~Vr~la~~vlkil~ 462 (534)
=+..||..+..++..+.
T Consensus 662 ~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 25567777766665544
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.68 E-value=2.4 Score=46.54 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCH-HHHHHHHHhhcchHHHHHHhhccccccccccHHHHHhhhhc
Q 041798 367 MFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHF-QVAERALFLWNNDHIRNLINLNRKVILPIIFPALERNTRGH 445 (534)
Q Consensus 367 lFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hf-qVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~~~sk~H 445 (534)
..+.-|..++..+++ ++......++..+-..+++.+. .|-+.++..+. .+.......-...+|.++|.|.... ++
T Consensus 575 ~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~l~~~l-~~ 650 (861)
T 2bpt_A 575 NILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS--ALAASLGKGFEKYLETFSPYLLKAL-NQ 650 (861)
T ss_dssp HHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHh-cc
Confidence 455566666666654 5566677788888888888766 67778776664 2333333222233445555555443 22
Q ss_pred chHHHHHHHHHHHHHH
Q 041798 446 WNQAVQSLTLNVRKIF 461 (534)
Q Consensus 446 Wn~~Vr~la~~vlkil 461 (534)
=+..+|..+..++..+
T Consensus 651 ~~~~vr~~a~~~l~~l 666 (861)
T 2bpt_A 651 VDSPVSITAVGFIADI 666 (861)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 2334666666555533
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=88.29 E-value=11 Score=37.67 Aligned_cols=234 Identities=11% Similarity=0.055 Sum_probs=115.5
Q ss_pred HHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHH-HHHHHHHHHhhhccCCcCChHHHHHHHHHH
Q 041798 217 KLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIR-KAINNIFYRFIFETEKHNGIAELLEILGSI 295 (534)
Q Consensus 217 ~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIR-k~Innif~~FI~e~e~hnGIaELLeIlgSI 295 (534)
...+..++...+..|+.++.++|+.-|...-..|..|-......|..+. ..+-..+.+++.......-....+..|+.+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3334455566888999999999999999999998888775444444332 233345556554322222234456667777
Q ss_pred HhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhc---------cCcHHHHHHHhhccCCCCCChhHh
Q 041798 296 INGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKD---------FKLADTVIRGLLKYWPLTNSSKEV 366 (534)
Q Consensus 296 InGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKD---------p~La~~vi~~LLk~WP~tns~KEv 366 (534)
..+-....+.....-....|+.+.+...-.. ......++..+...+ ..+...++..| + ..+..-..
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~---~~~~~v~~ 252 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV-LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-M---HNDYKVVS 252 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-T---CSCHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-C---CCchhHHH
Confidence 6543111111111112344555554332111 112223333332222 23444444433 2 12221112
Q ss_pred HHHHHHHHHHHhCChHHHHHHH-HHHHHHHHHhhCCCCHHHHHHHHHhhcc-----hHHHHHHhhccccccccccHHHHH
Q 041798 367 MFLGELEEVLEATQAAEFQRCM-VPLFRQIGRCLNSSHFQVAERALFLWNN-----DHIRNLINLNRKVILPIIFPALER 440 (534)
Q Consensus 367 lFL~eleeILe~~~~~~f~~i~-~pLF~~la~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~paL~~ 440 (534)
.-+.-|..+... .+...+.+. ..+...|..++.+++..|-+.|+....| +.....+.+ ..++|.++..|..
T Consensus 253 ~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 253 PALRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANIFPALISILQT 329 (450)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhc
Confidence 222333333221 122222222 2467778888899999998888866543 222111111 2345555554432
Q ss_pred hhhhcchHHHHHHHHHHHHHHHH
Q 041798 441 NTRGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 441 ~sk~HWn~~Vr~la~~vlkil~e 463 (534)
=+..||..+..++.-+..
T Consensus 330 -----~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 330 -----AEFRTRKEAAWAITNATS 347 (450)
T ss_dssp -----SCHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHc
Confidence 256677777766665543
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=86.10 E-value=47 Score=36.93 Aligned_cols=156 Identities=9% Similarity=0.127 Sum_probs=99.5
Q ss_pred HHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhcc
Q 041798 348 TVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNR 427 (534)
Q Consensus 348 ~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~ 427 (534)
.++..++..|.-.++.=.-....-+.++...++ ++|...+..+...+.+.++...+.|...|.... -.+...+...-
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~al--g~i~~~~~~~~ 705 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAI--GEISIQMGIEM 705 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHH--HHHHHHHGGGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHH--HHHHHHhhHhH
Confidence 356667777755444444456777888877775 578888888999999999888888866655443 34444444444
Q ss_pred ccccccccHHHHHhhh-hcchHHHHHHHHHHHHHHHHhcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041798 428 KVILPIIFPALERNTR-GHWNQAVQSLTLNVRKIFSDADQALF----DECLARFQEDEMKEKETQEKRESTWKRLEDLAA 502 (534)
Q Consensus 428 ~~IlPii~paL~~~sk-~HWn~~Vr~la~~vlkil~e~D~~lf----~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~ 502 (534)
...++.+++.|.+..+ ..-+.+++..+..++--|....|... .++...+...-. ......+++..-+.+-....
T Consensus 706 ~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~-~~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 706 QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR-NIRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH-TSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 4444556666666543 35677888888888887877777754 334444333221 11223346667777777777
Q ss_pred hcCCC
Q 041798 503 SRAVS 507 (534)
Q Consensus 503 ~~~~~ 507 (534)
.++++
T Consensus 785 ~~p~~ 789 (852)
T 4fdd_A 785 VNPSG 789 (852)
T ss_dssp HCGGG
T ss_pred hChHh
Confidence 77764
No 14
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=85.18 E-value=21 Score=40.18 Aligned_cols=202 Identities=10% Similarity=0.125 Sum_probs=99.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCC--chHH
Q 041798 230 RLLDLFDSEDQREREYLKTILHRIYGKFMV-HRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALP--LKEE 306 (534)
Q Consensus 230 ~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~P--LKeE 306 (534)
++++.+. .|+..++.+..+++++...+.. ..+|+-..+..++-.| .. .+++.+|.+++.++..|... ..+
T Consensus 690 ~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~--~~---~~~~~~l~l~~~li~~f~~~~~~~~- 762 (963)
T 2x19_B 690 KVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMY--ST---IPQASALDLTRQLVHIFAHEPAHFP- 762 (963)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHH--HH---SCCHHHHHHHHHHHHHHTTCTTTCH-
T ss_pred HHHHhcc-CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH--Hc---CCccHHHHHHHHHHHHhCCCcchHH-
Confidence 4444433 5667777777777775432221 2344444343333322 11 24678999999999865442 111
Q ss_pred HHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHH-H
Q 041798 307 HKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEF-Q 385 (534)
Q Consensus 307 Hk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f-~ 385 (534)
.+..+.+.+..|+...+.+|+.- .+.=..-|+..+..++..+...-+ .
T Consensus 763 ----------------~~~~~l~~~~~~~l~~~~~~~~~---------------~pd~~~~~f~ll~~~~~~~~~~~~~~ 811 (963)
T 2x19_B 763 ----------------PIEALFLLVTSVTLTLFQQGPRD---------------HPDIVDSFMQLLAQALKRKPDLFLCE 811 (963)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHCTTT---------------CHHHHHHHHHHHHHHHHHCGGGGGCT
T ss_pred ----------------HHHHHHHHHHHHHHHHHhhCccc---------------CchHHHHHHHHHHHHHHhCcHHHcCC
Confidence 11122334445554444443221 011112334444555544332211 1
Q ss_pred HH-HHHHHHHHHHhhCCCCHHHHHHHHHhhcc--------hHHHHHHhhccccccccccHHHHH-hhhhcchHHHHHHHH
Q 041798 386 RC-MVPLFRQIGRCLNSSHFQVAERALFLWNN--------DHIRNLINLNRKVILPIIFPALER-NTRGHWNQAVQSLTL 455 (534)
Q Consensus 386 ~i-~~pLF~~la~cl~S~hfqVAErAL~~w~N--------~~i~~li~~n~~~IlPii~paL~~-~sk~HWn~~Vr~la~ 455 (534)
.. ...++..+..++..+|..|+..|+.+|.+ +.+..++..+-..++..++..+.. ..+..|+. ..
T Consensus 812 ~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-----~~ 886 (963)
T 2x19_B 812 RLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDC-----FA 886 (963)
T ss_dssp TSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHH-----HH
T ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHH-----HH
Confidence 22 45678888889999999999999998854 233333333333333333333331 22444542 22
Q ss_pred HHHHHHHHhcHHHHHHHHH
Q 041798 456 NVRKIFSDADQALFDECLA 474 (534)
Q Consensus 456 ~vlkil~e~D~~lf~~c~~ 474 (534)
.++..|...++..+.+.+.
T Consensus 887 ~il~~l~~~~~~~~~~~l~ 905 (963)
T 2x19_B 887 DILFALNKHCFSLLSMWIK 905 (963)
T ss_dssp HHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHHHHH
Confidence 3334444455655555444
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=84.85 E-value=13 Score=43.29 Aligned_cols=248 Identities=13% Similarity=0.140 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHH
Q 041798 128 KDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLR 207 (534)
Q Consensus 128 Ke~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NIFR~lPp~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillr 207 (534)
++++++++.+|.+.+......+++.....++..+- +.+. ++.|..-+.....+..
T Consensus 20 ~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll----~~L~---------------------d~~~~vR~~A~~~L~~ 74 (1230)
T 1u6g_C 20 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMIL----KLLE---------------------DKNGEVQNLAVKCLGP 74 (1230)
T ss_dssp HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHH----HHTT---------------------CSSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHH----HHhc---------------------CCCHHHHHHHHHHHHH
Confidence 57888999999999877655666555555554432 2221 2245555556666666
Q ss_pred HhhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCc------hHHHHHHHHHHHHHhhhccCC
Q 041798 208 FVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVH------RPFIRKAINNIFYRFIFETEK 281 (534)
Q Consensus 208 fv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~------R~fIRk~Innif~~FI~e~e~ 281 (534)
++.. ..+ .++ ...+..|+..+.+++++-|...-..|..|....... .......+-..+.+.+.+.+.
T Consensus 75 l~~~--~~~----~~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~ 147 (1230)
T 1u6g_C 75 LVSK--VKE----YQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147 (1230)
T ss_dssp HHTT--SCH----HHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHh--CCH----HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc
Confidence 6542 121 122 245667888888899988988777777777654432 111222333334444432233
Q ss_pred cCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhcc-----CcHHHHHHHhhcc
Q 041798 282 HNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDF-----KLADTVIRGLLKY 356 (534)
Q Consensus 282 hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp-----~La~~vi~~LLk~ 356 (534)
..-....+++++.+...+...+.+.. .-+...|+++...+.. .....-..|+..++..-+ .+...++.+|..-
T Consensus 148 ~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 148 VSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC
Confidence 33456788888888864433333322 2245666776655432 334455667777765432 3455666666543
Q ss_pred -CCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q 041798 357 -WPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLW 414 (534)
Q Consensus 357 -WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w 414 (534)
|+. ... ..+.-+..+...++. .|...+..++..+-.++..++-.|-+.|+..|
T Consensus 226 ~~~~--~r~--~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l 279 (1230)
T 1u6g_C 226 DSMS--TTR--TYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279 (1230)
T ss_dssp CSSC--SCT--THHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHH
T ss_pred Cchh--HHH--HHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 211 111 224555556655543 55555556666777777776666555555544
No 16
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=81.71 E-value=3.1 Score=37.29 Aligned_cols=87 Identities=10% Similarity=0.163 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHhhccCCCC--CChhHhHHHHHHHHHHHhCC-------hHHHHHHHHHHHHHHHHhhCCC
Q 041798 332 SYCITQFVEKDFKLADTVIRGLLKYWPLT--NSSKEVMFLGELEEVLEATQ-------AAEFQRCMVPLFRQIGRCLNSS 402 (534)
Q Consensus 332 ~yci~qFveKDp~La~~vi~~LLk~WP~t--ns~KEvlFL~eleeILe~~~-------~~~f~~i~~pLF~~la~cl~S~ 402 (534)
..-..+++-.+..-+..++..+.++-=.. ++.|.+-+|..+.+|+..+- -..|.++++++|..+....++.
T Consensus 22 Iq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~ 101 (142)
T 2km4_A 22 ISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRD 101 (142)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33445666666677777777777776665 66999999999999997543 2468889999999999887888
Q ss_pred CHHHHHHHHHhhcchH
Q 041798 403 HFQVAERALFLWNNDH 418 (534)
Q Consensus 403 hfqVAErAL~~w~N~~ 418 (534)
+-+..+|-+.+|....
T Consensus 102 ~~~kv~rvl~iWeer~ 117 (142)
T 2km4_A 102 LKKKLSRVVNILKERN 117 (142)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccC
Confidence 8899999999997644
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=81.16 E-value=46 Score=33.07 Aligned_cols=240 Identities=10% Similarity=0.074 Sum_probs=113.1
Q ss_pred cchHHHHHHHHHHhhCCcCCHHHHh-------c---ccC--------HHH-HHHHHhhcCCCChHHHHHHHHHHHHHhhc
Q 041798 196 PHLQVVYEILLRFVASPETDAKLAK-------R---YID--------HSF-VLRLLDLFDSEDQREREYLKTILHRIYGK 256 (534)
Q Consensus 196 pHLqlVYeillrfv~s~~~d~~~ak-------~---~id--------~~F-i~~Ll~lfdSeDpRERd~LktiLhrIY~K 256 (534)
+|+.-+...|...+..++-++.+.. . ++. ..+ +..|.+.+.++|+.-|..+-.+|..+...
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5666677777777766522222111 0 111 123 34455567888998888888888887766
Q ss_pred ccC-chHHHH-HHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccC-----------------CCchHHHHHHHHHHHhc
Q 041798 257 FMV-HRPFIR-KAINNIFYRFIFETEKHNGIAELLEILGSIINGFA-----------------LPLKEEHKLFLVRALIP 317 (534)
Q Consensus 257 f~~-~R~fIR-k~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa-----------------~PLKeEHk~Fl~rvLlP 317 (534)
+.. .++++. ..+. .+...+.+ ....-....+++++.+...-. .++...-+.+ ...++|
T Consensus 248 ~~~~~~~~~~~~l~~-~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p 324 (462)
T 1ibr_B 248 YYQYMETYMGPALFA-ITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVP 324 (462)
T ss_dssp CGGGCTTTTTTTHHH-HHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH-hhhccH
Confidence 543 233443 2222 22222211 111112445666666553210 1111111111 122333
Q ss_pred ----cCCCCC------cccchhhHHHHHHHHHHhcc-CcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHH
Q 041798 318 ----LHKPKC------VSMYHQQLSYCITQFVEKDF-KLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQR 386 (534)
Q Consensus 318 ----LHk~k~------~~~y~~qL~yci~qFveKDp-~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~ 386 (534)
+..... -......-..|+..+...-+ .+...++..+..+---.+......-+.-+..+.+.+.++.+..
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 221110 00111122334444443333 2333333333332222233333334555666666555454555
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhcc--ccccccccHHHHH
Q 041798 387 CMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNR--KVILPIIFPALER 440 (534)
Q Consensus 387 i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~--~~IlPii~paL~~ 440 (534)
.+..++..|..+++++|..|-.+|+.... .+...+.... ...++.+++.|.+
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~--~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHhcccccccHHHHHHHHHHHHH
Confidence 55668888999999999999888877664 3444443321 2344555665553
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=80.38 E-value=33 Score=35.59 Aligned_cols=235 Identities=14% Similarity=0.071 Sum_probs=113.2
Q ss_pred HHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHH-HHHHHHHHhhhccCCcCChHHHHHHHHH
Q 041798 216 AKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRK-AINNIFYRFIFETEKHNGIAELLEILGS 294 (534)
Q Consensus 216 ~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk-~Innif~~FI~e~e~hnGIaELLeIlgS 294 (534)
+...+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+.. .+-..+.+.+.......-.......|+.
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344444555567888999999999999999999998887654444544432 1223444554332222233455666666
Q ss_pred HHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhcc---------CcHHHHHHHhhccCCCCCChhH
Q 041798 295 IINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDF---------KLADTVIRGLLKYWPLTNSSKE 365 (534)
Q Consensus 295 IInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp---------~La~~vi~~LLk~WP~tns~KE 365 (534)
+..+...+-. ....-....|+.|.....-.. ......++......++ .....++..|- ..+..=.
T Consensus 230 L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v-~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~----~~~~~v~ 303 (528)
T 4b8j_A 230 FCRGKPQPSF-EQTRPALPALARLIHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL----HPSPSVL 303 (528)
T ss_dssp HHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT----CSCHHHH
T ss_pred HHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc----CCChhHH
Confidence 6666422222 222233566666665543211 1122233333322222 23333333332 1121111
Q ss_pred hHHHHHHHHHHHhCChHHHHHHH-HHHHHHHHHhhCCC-CHHHHHHHHHhhcc-----hHHHHHHhhccccccccccHHH
Q 041798 366 VMFLGELEEVLEATQAAEFQRCM-VPLFRQIGRCLNSS-HFQVAERALFLWNN-----DHIRNLINLNRKVILPIIFPAL 438 (534)
Q Consensus 366 vlFL~eleeILe~~~~~~f~~i~-~pLF~~la~cl~S~-hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~paL 438 (534)
..-+.-|..+.. -.+...+.+. ..+...|..++.++ +..|.+.|+....| +.....+.+ ..++|.++..|
T Consensus 304 ~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~~i~~L~~lL 380 (528)
T 4b8j_A 304 IPALRTVGNIVT-GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--AGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCCHHHHHHHH
Confidence 111222222221 1233333222 23456666777787 88888888765543 111111111 13344444433
Q ss_pred HHhhhhcchHHHHHHHHHHHHHHHHh
Q 041798 439 ERNTRGHWNQAVQSLTLNVRKIFSDA 464 (534)
Q Consensus 439 ~~~sk~HWn~~Vr~la~~vlkil~e~ 464 (534)
. .. +..++..|..++.-+..-
T Consensus 381 ~----~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 381 Q----TA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp H----HS-CHHHHHHHHHHHHHHHHH
T ss_pred h----cC-CHHHHHHHHHHHHHHHcC
Confidence 2 22 556666666665555443
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=80.36 E-value=31 Score=40.14 Aligned_cols=100 Identities=12% Similarity=0.188 Sum_probs=68.2
Q ss_pred hhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhh-------cccccccccc
Q 041798 363 SKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINL-------NRKVILPIIF 435 (534)
Q Consensus 363 ~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~-------n~~~IlPii~ 435 (534)
.-..--+..+..+++...++.|.....++...+..+++..+..|+..|+..+. .+...+.. .-...++.++
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~--~l~~~~~~~~~~~~~~~~~~~~~ll 569 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQ--QLVKVIRPLDQPSSFDATPYIKDLF 569 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHHCCSSSCCCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHH--HHHHHhcCcccccccchHHHHHHHH
Confidence 33445577788888888888888888888888889999999999888876664 33333322 1112234455
Q ss_pred HHHHHhh-hhcchHHHHHHHHHHHHHHHHh
Q 041798 436 PALERNT-RGHWNQAVQSLTLNVRKIFSDA 464 (534)
Q Consensus 436 paL~~~s-k~HWn~~Vr~la~~vlkil~e~ 464 (534)
|.+.... ....+..+|..+..++..+.+.
T Consensus 570 ~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 570 TCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 5555433 2567889999998888877654
No 20
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=80.13 E-value=3.4 Score=36.18 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHhhCCCC
Q 041798 330 QLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQ------AAEFQRCMVPLFRQIGRCLNSSH 403 (534)
Q Consensus 330 qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~------~~~f~~i~~pLF~~la~cl~S~h 403 (534)
+-..-+++|+-.+.+-+..++..+.++--.+.+.+.+-+|..+.+|+..+. -..|.+.+.++|..+.......+
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~ 100 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGC 100 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 445556677777777788888888888778888899999999999997542 24578889999999998888888
Q ss_pred HHHHHHHHHhhcc
Q 041798 404 FQVAERALFLWNN 416 (534)
Q Consensus 404 fqVAErAL~~w~N 416 (534)
-+...+-+.+|..
T Consensus 101 k~kl~kll~iW~~ 113 (135)
T 4fu3_A 101 KKPLERLLNIWQE 113 (135)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 8889999999975
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=79.63 E-value=24 Score=36.78 Aligned_cols=230 Identities=12% Similarity=0.058 Sum_probs=114.3
Q ss_pred HHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHH-HHHHHHHHHhhhccCCcCChHHHHHHHHHHH
Q 041798 218 LAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIR-KAINNIFYRFIFETEKHNGIAELLEILGSII 296 (534)
Q Consensus 218 ~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIR-k~Innif~~FI~e~e~hnGIaELLeIlgSII 296 (534)
..+..++...+..|+.++.++|+.-|...-..|..|-+.-...|..+. ..+-..+.+.+.. ....-....+..|+.+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHh
Confidence 333444455677888899999999999999998888765434444432 2233445555543 11112344566677766
Q ss_pred hccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhcc---------CcHHHHHHHhhccCCCCCChhHhH
Q 041798 297 NGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDF---------KLADTVIRGLLKYWPLTNSSKEVM 367 (534)
Q Consensus 297 nGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp---------~La~~vi~~LLk~WP~tns~KEvl 367 (534)
.+-..........-....|+.|.....-. -......++......++ .+...++.. +++ .+..-...
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l-L~~---~~~~v~~~ 318 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-LSH---ESTLVQTP 318 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG-GGC---SCHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH-HCC---CChhhHHH
Confidence 55422222223333456677776654321 11223344444443333 333333333 321 12111111
Q ss_pred HHHHHHHHHHhCChHHHHHHH-HHHHHHHHHhhCCCCHHHHHHHHHhhcch------HHHHHHhhccccccccccHHHHH
Q 041798 368 FLGELEEVLEATQAAEFQRCM-VPLFRQIGRCLNSSHFQVAERALFLWNND------HIRNLINLNRKVILPIIFPALER 440 (534)
Q Consensus 368 FL~eleeILe~~~~~~f~~i~-~pLF~~la~cl~S~hfqVAErAL~~w~N~------~i~~li~~n~~~IlPii~paL~~ 440 (534)
-+.-|..+.. -.++..+.+. ..+...|..++.+++..|-+.|+..+.|- .+..++ ...++|.++..|.
T Consensus 319 a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~~l~~L~~lL~- 393 (530)
T 1wa5_B 319 ALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI---DANLIPPLVKLLE- 393 (530)
T ss_dssp HHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTCHHHHHHHHH-
T ss_pred HHHHHHHHHc-CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH---HCCCHHHHHHHHh-
Confidence 2222332221 1233323222 24666788888999999988888665541 111122 1234455554442
Q ss_pred hhhhcchHHHHHHHHHHHHHHH
Q 041798 441 NTRGHWNQAVQSLTLNVRKIFS 462 (534)
Q Consensus 441 ~sk~HWn~~Vr~la~~vlkil~ 462 (534)
+-+..|+..+..++.-+.
T Consensus 394 ----~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 394 ----VAEYKTKKEACWAISNAS 411 (530)
T ss_dssp ----HSCHHHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHHH
Confidence 234566666666555443
No 22
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=74.52 E-value=27 Score=34.65 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=68.5
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhcc-ccc---cccccHHHHHhhhh
Q 041798 369 LGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNR-KVI---LPIIFPALERNTRG 444 (534)
Q Consensus 369 L~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~-~~I---lPii~paL~~~sk~ 444 (534)
++.|.+.++. .+++......-+|+-++--+.+.|++|+.++|.+.. .++..+.+.. +.. ...++|.|..-. .
T Consensus 67 le~L~~~l~~-~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP~LveKl-G 142 (266)
T 2of3_A 67 LDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVPYLLLKT-G 142 (266)
T ss_dssp HHHHHHHHHH-CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHHHHHHGG-G
T ss_pred HHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHHh-C
Confidence 3444444443 345555556667887776666789999999999884 4444444321 111 245667766543 6
Q ss_pred cchHHHHHHHHHHHHHHHHhc-HH-HHHHHHHHHH
Q 041798 445 HWNQAVQSLTLNVRKIFSDAD-QA-LFDECLARFQ 477 (534)
Q Consensus 445 HWn~~Vr~la~~vlkil~e~D-~~-lf~~c~~~~~ 477 (534)
|=++.||..+..+++.+.++- |. +|+.+...++
T Consensus 143 d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~k 177 (266)
T 2of3_A 143 EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK 177 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGG
T ss_pred CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHc
Confidence 778999999999999998854 44 7777766543
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=74.26 E-value=21 Score=38.44 Aligned_cols=175 Identities=11% Similarity=0.111 Sum_probs=104.1
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchH
Q 041798 226 SFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKE 305 (534)
Q Consensus 226 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKe 305 (534)
..+..|++.+.+.|..-|..+-.-++++-.+|...- ..+-+.+.+++... .-.-..|.+..++.|+.++.- +++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~----~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----ERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-KYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH----HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-hHH
Confidence 356678888888899888887777777777764322 22224555555332 112246677778888876531 221
Q ss_pred HHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHH
Q 041798 306 EHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQ 385 (534)
Q Consensus 306 EHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~ 385 (534)
.-...|... ...-....-.....+++.+|...-+. ...+++.+++.+...++.=+...|.-+..+....+. +.+
T Consensus 427 ~~v~~L~~~----l~~~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-~~~ 500 (591)
T 2vgl_B 427 SIIATLCEN----LDSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-ETQ 500 (591)
T ss_dssp TTHHHHHHT----TTTCCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS-TTH
T ss_pred HHHHHHHHH----HHhccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch-HHH
Confidence 111122222 22111112245566777777655433 678999999988876666666677777777665543 222
Q ss_pred HHHHHHHHHHHHhh-CCCCHHHHHHHHHhhc
Q 041798 386 RCMVPLFRQIGRCL-NSSHFQVAERALFLWN 415 (534)
Q Consensus 386 ~i~~pLF~~la~cl-~S~hfqVAErAL~~w~ 415 (534)
..... .+..|. +|.+..|=+||..+|.
T Consensus 501 ~~i~~---ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELVQQ---VLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHH---HHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHH---HHHHhhhcCCChHHHHHHHHHHH
Confidence 22223 334554 5799999999998874
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=72.92 E-value=50 Score=29.25 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=85.0
Q ss_pred cCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchH-HHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCC
Q 041798 223 IDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRP-FIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFAL 301 (534)
Q Consensus 223 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~ 301 (534)
....+...|+.++.++|+.-|...-..|..+-..-...+. ++....-..+.+++... ...-....+..|+.+..+.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~-- 85 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG-- 85 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC--
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC--
Confidence 3444556788888899998888888787777643333332 22222333445554332 1111234455566555332
Q ss_pred CchHHHHHHH-----HHHHhccCCCCCcccchhhHHHHHHHHHHhccC---------cHHHHHHHhhccCCCCCChhHhH
Q 041798 302 PLKEEHKLFL-----VRALIPLHKPKCVSMYHQQLSYCITQFVEKDFK---------LADTVIRGLLKYWPLTNSSKEVM 367 (534)
Q Consensus 302 PLKeEHk~Fl-----~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~---------La~~vi~~LLk~WP~tns~KEvl 367 (534)
++.+..+ ...|+.+.+...... ...-..++..+...++. ....+++.| +. .+..=...
T Consensus 86 ---~~~~~~i~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~---~~~~v~~~ 157 (210)
T 4db6_A 86 ---NEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SS---PNEQILQE 157 (210)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHTTCSCHHH-HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TC---SCHHHHHH
T ss_pred ---cHHHHHHHHCCCHHHHHHHHcCCcHHH-HHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cC---CCHHHHHH
Confidence 2332222 355666666553211 12223344433333222 233333333 21 22111111
Q ss_pred HHHHHHHHHHhCChHHHHHH-HHHHHHHHHHhhCCCCHHHHHHHHHhhcc
Q 041798 368 FLGELEEVLEATQAAEFQRC-MVPLFRQIGRCLNSSHFQVAERALFLWNN 416 (534)
Q Consensus 368 FL~eleeILe~~~~~~f~~i-~~pLF~~la~cl~S~hfqVAErAL~~w~N 416 (534)
-+.-|..+.. -.++.-..+ ..-....|...+.+.+..|.+.|+..+.+
T Consensus 158 a~~aL~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 158 ALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1222333322 112222222 12366778888889999999998876643
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=70.04 E-value=42 Score=30.31 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=97.0
Q ss_pred HHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHH-HHHHHHHHHHhhhccCCcCChHHHHHHHHH
Q 041798 216 AKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFI-RKAINNIFYRFIFETEKHNGIAELLEILGS 294 (534)
Q Consensus 216 ~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fI-Rk~Innif~~FI~e~e~hnGIaELLeIlgS 294 (534)
+...+..++...+..|+.++.++|+.-|...-..|..+-......|..+ ....-..+.+++... ...-....+..|+.
T Consensus 34 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~ 112 (252)
T 4hxt_A 34 ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALAN 112 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 3445556666789999999999999999998888888876534444433 222334555555432 12122334555555
Q ss_pred HHhccCCCchHHHHHH-----HHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcH--------HHHHHHhhccCCCCC
Q 041798 295 IINGFALPLKEEHKLF-----LVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLA--------DTVIRGLLKYWPLTN 361 (534)
Q Consensus 295 IInGfa~PLKeEHk~F-----l~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La--------~~vi~~LLk~WP~tn 361 (534)
+..+. ++.+.. ....|+.+.+...-. -...-..++......++... -+.+-.+++ ..+
T Consensus 113 l~~~~-----~~~~~~~~~~~~i~~L~~~l~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~ 183 (252)
T 4hxt_A 113 IASGP-----DEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STD 183 (252)
T ss_dssp HTTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSC
T ss_pred HHcCC-----HHHHHHHHHCCCHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CCC
Confidence 54322 222222 235566666655422 23334445554444333321 122222332 122
Q ss_pred ChhHhHHHHHHHHHHHhCChHHHHHHH-HHHHHHHHHhhCCCCHHHHHHHHHhhcc
Q 041798 362 SSKEVMFLGELEEVLEATQAAEFQRCM-VPLFRQIGRCLNSSHFQVAERALFLWNN 416 (534)
Q Consensus 362 s~KEvlFL~eleeILe~~~~~~f~~i~-~pLF~~la~cl~S~hfqVAErAL~~w~N 416 (534)
..-...-+.-|..+.. .+++..+.+. ..+...|.+.+.+.+..|.+.|+....|
T Consensus 184 ~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 184 SEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 1111111222222221 1233222221 2356777788888888888888876654
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=68.62 E-value=57 Score=33.90 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhcc-----hHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 041798 389 VPLFRQIGRCLNSSHFQVAERALFLWNN-----DHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 389 ~pLF~~la~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e 463 (534)
..+...|...+.+.+..|-..|+..+.| +.....+.+ ..++|.+...| .|=+..|+..+..++.-+..
T Consensus 256 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~v~~Lv~lL-----~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID--VRIPKRLVELL-----SHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTCHHHHHHGG-----GCSCHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh--cCcHHHHHHHH-----CCCChhhHHHHHHHHHHHHc
Confidence 3455666677788888887777755433 111111111 13344444433 23466788888888877765
Q ss_pred hcHH
Q 041798 464 ADQA 467 (534)
Q Consensus 464 ~D~~ 467 (534)
-++.
T Consensus 329 ~~~~ 332 (530)
T 1wa5_B 329 GNDL 332 (530)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 5443
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=66.35 E-value=1.5e+02 Score=32.02 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCC---C-
Q 041798 287 ELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTN---S- 362 (534)
Q Consensus 287 ELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tn---s- 362 (534)
++..-+|.+...|+ |-.+.+ ..+|+-+.+... ....++...++.+.+.++|.+-..++..|..+..... +
T Consensus 404 ~~v~~I~~la~k~~-~~~~~~----v~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~ 477 (618)
T 1w63_A 404 DCASGIFLAAEKYA-PSKRWH----IDTIMRVLTTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPL 477 (618)
T ss_dssp HHHHHHHHHHHSSC-CCHHHH----HHHHHHHHHHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHHHHhC-ccHHHH----HHHHHHHHHhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHH
Confidence 33444455544443 333322 233444444333 2344567788899999999998888888877765321 1
Q ss_pred -hhHhHHHHHHHHHHHh----------CChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhcccccc
Q 041798 363 -SKEVMFLGELEEVLEA----------TQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVIL 431 (534)
Q Consensus 363 -~KEvlFL~eleeILe~----------~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~Il 431 (534)
..-+..|+|..+.+.. +.|.....+ +..+.+.. +.+..| |+..++. +.++..... ...
T Consensus 478 ~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~-~~~~~v--r~~~lta---~~Kl~~~~~-~~~ 546 (618)
T 1w63_A 478 VQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDI----LESVLISN-MSTSVT--RGYALTA---IMKLSTRFT-CTV 546 (618)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHH----HHHHHHST-TCCHHH--HHHHHHH---HHHHHTTCS-SCH
T ss_pred HHHHHHHHhhhHHHhcccccccccccCCCHHHHHHH----HHHHHhcc-CCCHHH--HHHHHHH---HHHHHHhCc-chH
Confidence 1223456666665532 233333222 22222111 222222 1111111 111222222 123
Q ss_pred ccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhcHH
Q 041798 432 PIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQA 467 (534)
Q Consensus 432 Pii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D~~ 467 (534)
+.+..-|.+ ...+-|..||..|...+++|.. ++.
T Consensus 547 ~~l~~~L~~-~~~~~d~evrdRA~~y~~ll~~-~~~ 580 (618)
T 1w63_A 547 NRIKKVVSI-YGSSIDVELQQRAVEYNALFKK-YDH 580 (618)
T ss_dssp HHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHT-TTT
T ss_pred HHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcC-cHH
Confidence 333333443 3567899999999999998865 443
No 28
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=64.07 E-value=33 Score=32.85 Aligned_cols=87 Identities=10% Similarity=0.103 Sum_probs=56.3
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhccc------ccc-ccccHHHHHhhh
Q 041798 371 ELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRK------VIL-PIIFPALERNTR 443 (534)
Q Consensus 371 eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~------~Il-Pii~paL~~~sk 443 (534)
-+..+++.++|.........+...|..++++.+.+|=+.|+.+... ++..... ..+ |.++|.|.+..
T Consensus 127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~-----~~~~~~~~~~~l~~~l~~~iip~l~~~l- 200 (249)
T 2qk1_A 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA-----SMKEEKDGYSTLQRYLKDEVVPIVIQIV- 200 (249)
T ss_dssp HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH-----HHHHCCSCSHHHHHHHTTTHHHHHHHHH-
T ss_pred HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----HHHHcCCcchhHHHHHHHHHHHHHHHHh-
Confidence 3555666665422111134577777788999999999999987643 2322221 134 66777777654
Q ss_pred hcchHHHHHHHHHHHHHHHH
Q 041798 444 GHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 444 ~HWn~~Vr~la~~vlkil~e 463 (534)
++=+..||..|..++-.++.
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 44478899999999988764
No 29
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=62.37 E-value=16 Score=32.80 Aligned_cols=90 Identities=11% Similarity=0.180 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHhhCCCCH
Q 041798 328 HQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQ---AAEFQRCMVPLFRQIGRCLNSSHF 404 (534)
Q Consensus 328 ~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~---~~~f~~i~~pLF~~la~cl~S~hf 404 (534)
.++...-++.++..+..-+..++..+.+|--++.+.+.+.+|.-+..|+..+. ...|.+.+.++|...-.++....-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45566667888888888888888888888888999999999999999998775 345777888899888887766666
Q ss_pred HHHHHHHHhhcch
Q 041798 405 QVAERALFLWNND 417 (534)
Q Consensus 405 qVAErAL~~w~N~ 417 (534)
+-..|-+.+|...
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 6677788999754
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=61.95 E-value=67 Score=34.72 Aligned_cols=81 Identities=11% Similarity=0.106 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHh--------------ccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 041798 329 QQLSYCITQFVEK--------------DFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQ 394 (534)
Q Consensus 329 ~qL~yci~qFveK--------------Dp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~ 394 (534)
.-..+|+..|.+. +|..+..++..+++.+ ..++.-+...|.-+..+.-..+.. ...+-..
T Consensus 479 ~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-----~~~l~~~ 552 (618)
T 1w63_A 479 QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFTCT-----VNRIKKV 552 (618)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSSC-----HHHHHHH
T ss_pred HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcch-----HHHHHHH
Confidence 3567888888752 3445666777777666 334444445566665555444321 2334455
Q ss_pred HHHhhCCCCHHHHHHHHHhhc
Q 041798 395 IGRCLNSSHFQVAERALFLWN 415 (534)
Q Consensus 395 la~cl~S~hfqVAErAL~~w~ 415 (534)
+..|.+|.+..|=+||..+|.
T Consensus 553 L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 553 VSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp HHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH
Confidence 677889999999999999985
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=60.08 E-value=59 Score=32.27 Aligned_cols=69 Identities=14% Similarity=0.048 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhcc-----hHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhc
Q 041798 391 LFRQIGRCLNSSHFQVAERALFLWNN-----DHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDAD 465 (534)
Q Consensus 391 LF~~la~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D 465 (534)
+...|...+.+.+-.|.+.|+....| +.....+. ...++|.++..|. |=+..++..+..++.-+..-+
T Consensus 193 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~ 265 (450)
T 2jdq_A 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI--DAGVCRRLVELLM-----HNDYKVVSPALRAVGNIVTGD 265 (450)
T ss_dssp GHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHH--HTTTHHHHHHHTT-----CSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHH--HcCcHHHHHHHHC-----CCchhHHHHHHHHHHHHhhCC
Confidence 44455556677777777766544322 11111111 1223444443332 335577877777777666554
Q ss_pred H
Q 041798 466 Q 466 (534)
Q Consensus 466 ~ 466 (534)
+
T Consensus 266 ~ 266 (450)
T 2jdq_A 266 D 266 (450)
T ss_dssp H
T ss_pred h
Confidence 4
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=59.67 E-value=1.6e+02 Score=30.25 Aligned_cols=225 Identities=15% Similarity=0.093 Sum_probs=111.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhccc--CchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchH
Q 041798 228 VLRLLDLFDSEDQREREYLKTILHRIYGKFM--VHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKE 305 (534)
Q Consensus 228 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~--~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKe 305 (534)
+..|+..+.|+|+..|..--..|.++..... ..+.++...+-..+.+++...+...--.+.+..|+.|..|- +
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-----~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-----S 150 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 4567778888888888877777777754332 23344444444556666643321222345566777777653 2
Q ss_pred HHHHHH-----HHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHH-----HHHhhccC-CCCCChhHhHHHHHHHH
Q 041798 306 EHKLFL-----VRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTV-----IRGLLKYW-PLTNSSKEVMFLGELEE 374 (534)
Q Consensus 306 EHk~Fl-----~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~v-----i~~LLk~W-P~tns~KEvlFL~elee 374 (534)
+++..+ ...|+.|.+..... ...+-..++......++.....+ +..|++.- ...+..=...-+.-|..
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~~-v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSDD-VREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCHH-HHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 333332 35566666664322 23344455555554444322222 22333222 11111111111222333
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcc-----hHHHHHHhhccccccccccHHHHHhhhhcchHH
Q 041798 375 VLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNN-----DHIRNLINLNRKVILPIIFPALERNTRGHWNQA 449 (534)
Q Consensus 375 ILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~ 449 (534)
+...-+...+ .....+...|...+.+.+..|.+.|+..+.| +.....+. ...+ +|.|.+.. .|=+..
T Consensus 230 L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~g~----v~~Lv~lL-~~~~~~ 301 (528)
T 4b8j_A 230 FCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVI--EAGV----CPRLVELL-LHPSPS 301 (528)
T ss_dssp HHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH--HTTC----HHHHHHHT-TCSCHH
T ss_pred HHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH--HcCH----HHHHHHHH-cCCChh
Confidence 3222111111 2335667777888899999998888765533 11111111 1123 34444332 223567
Q ss_pred HHHHHHHHHHHHHHhcH
Q 041798 450 VQSLTLNVRKIFSDADQ 466 (534)
Q Consensus 450 Vr~la~~vlkil~e~D~ 466 (534)
|+..+..++.-+..-++
T Consensus 302 v~~~a~~~L~nl~~~~~ 318 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDD 318 (528)
T ss_dssp HHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 88888887776665444
No 33
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=57.15 E-value=1.1e+02 Score=27.44 Aligned_cols=216 Identities=15% Similarity=0.083 Sum_probs=108.1
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHH-HHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHH
Q 041798 228 VLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPF-IRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEE 306 (534)
Q Consensus 228 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~f-IRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeE 306 (534)
|..|+.++.++|+..|...-..|..+-......|.. +...+-..+.+++...+ ..-....+..|+.+..+- ++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~-----~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGP-----DE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCC-----hH
Confidence 567899999999888888888888876654433333 33334445556554321 111233444555444321 22
Q ss_pred HHHH-----HHHHHhccCCCCCcccchhhHHHHHHHHHHhccCc---------HHHHHHHhhccCCCCCChhHhHHHHHH
Q 041798 307 HKLF-----LVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKL---------ADTVIRGLLKYWPLTNSSKEVMFLGEL 372 (534)
Q Consensus 307 Hk~F-----l~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~L---------a~~vi~~LLk~WP~tns~KEvlFL~el 372 (534)
.+.. ....|+.+.+...-. ....-..++......++.. ...+++. ++ ..+. ++ ....
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~-l~---~~~~--~~--~~~a 148 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL-LT---STDS--EV--QKEA 148 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH-TT---CSCH--HH--HHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH-Hc---CCCH--HH--HHHH
Confidence 2222 245566666654321 1223334444444333332 2233322 22 1221 11 1222
Q ss_pred HHHHHhC---ChHHHHHH-HHHHHHHHHHhhCCCCHHHHHHHHHhhcc-----hHHHHHHhhccccccccccHHHHHhhh
Q 041798 373 EEVLEAT---QAAEFQRC-MVPLFRQIGRCLNSSHFQVAERALFLWNN-----DHIRNLINLNRKVILPIIFPALERNTR 443 (534)
Q Consensus 373 eeILe~~---~~~~f~~i-~~pLF~~la~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~paL~~~sk 443 (534)
-..|..+ .++..+.+ ...+...|..++.+++..|.+.|+....| +.....+.+ .-+++.|.+..+
T Consensus 149 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll~ 222 (252)
T 4hxt_A 149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLLT 222 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHC
Confidence 2222221 22222221 23466778888889999998888865543 222222221 113444554432
Q ss_pred hcchHHHHHHHHHHHHHHHHhc
Q 041798 444 GHWNQAVQSLTLNVRKIFSDAD 465 (534)
Q Consensus 444 ~HWn~~Vr~la~~vlkil~e~D 465 (534)
+=+..++..|..++.-|...+
T Consensus 223 -~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 223 -STDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp -CSCHHHHHHHHHHHHHHHHTC
T ss_pred -CCcHHHHHHHHHHHHHHHcCC
Confidence 447788988888888776554
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=54.00 E-value=77 Score=28.85 Aligned_cols=185 Identities=13% Similarity=0.084 Sum_probs=92.2
Q ss_pred hcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHH-HHHHHHHHhhhccCCcCChHHHHHHHHHHHhc
Q 041798 220 KRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRK-AINNIFYRFIFETEKHNGIAELLEILGSIING 298 (534)
Q Consensus 220 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk-~Innif~~FI~e~e~hnGIaELLeIlgSIInG 298 (534)
+..++...|..|+.++.++|+.-|...-.+|..+-......|..+.. ..-..+.+.+.. ....-....+..|+.+..+
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~ 126 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASG 126 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC
Confidence 34555567888999999999999998888888887644444443332 233455555543 2222234455566666443
Q ss_pred cCCCchHHH-HHH----HHHHHhccCCCCCcccchhhHHHHHHHHHHhcc---------CcHHHHHHHhhccCCCCCChh
Q 041798 299 FALPLKEEH-KLF----LVRALIPLHKPKCVSMYHQQLSYCITQFVEKDF---------KLADTVIRGLLKYWPLTNSSK 364 (534)
Q Consensus 299 fa~PLKeEH-k~F----l~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp---------~La~~vi~~LLk~WP~tns~K 364 (534)
. +.. ..+ ....|+.+........ ...-..++......++ .....+++ +++. .+..-
T Consensus 127 ~-----~~~~~~~~~~~~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~---~~~~v 196 (252)
T 4db8_A 127 G-----NEQIQAVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSS---PNEQI 196 (252)
T ss_dssp C-----HHHHHHHHHTTHHHHHHHGGGCSCHHH-HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-GGGC---SSHHH
T ss_pred C-----chHHHHHHHCCCHHHHHHHHhCCCHHH-HHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH-HHCC---CCHHH
Confidence 2 111 122 2356666665543211 2233344444443332 22333332 3321 11111
Q ss_pred HhHHHHHHHHHHHhCChHHHHHHHH-HHHHHHHHhhCCCCHHHHHHHHHhhcc
Q 041798 365 EVMFLGELEEVLEATQAAEFQRCMV-PLFRQIGRCLNSSHFQVAERALFLWNN 416 (534)
Q Consensus 365 EvlFL~eleeILe~~~~~~f~~i~~-pLF~~la~cl~S~hfqVAErAL~~w~N 416 (534)
...-+.-|..+.. -+++....+.. .+...|...+.+.+..|.+.|+....|
T Consensus 197 ~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 197 LQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1111222222221 13333333322 256667777788888888877765443
No 35
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=53.94 E-value=31 Score=29.87 Aligned_cols=87 Identities=11% Similarity=0.232 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHhh-CCCCHH
Q 041798 330 QLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQ---AAEFQRCMVPLFRQIGRCL-NSSHFQ 405 (534)
Q Consensus 330 qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~---~~~f~~i~~pLF~~la~cl-~S~hfq 405 (534)
+-..-+.+++-.+.+-+..++..+.++--.+.+.+.+-+|..+.+|+..+. ...|.+...+.+..+-..+ ...+-+
T Consensus 22 ~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~ 101 (132)
T 4flb_A 22 ESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSK 101 (132)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 444455677777777788888888888888888999999999999998652 3345444434333333333 456677
Q ss_pred HHHHHHHhhcc
Q 041798 406 VAERALFLWNN 416 (534)
Q Consensus 406 VAErAL~~w~N 416 (534)
-..+-+.+|..
T Consensus 102 kl~~ll~iW~~ 112 (132)
T 4flb_A 102 SVERIFKIWED 112 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 78889999975
No 36
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=52.00 E-value=3e+02 Score=31.04 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhccc
Q 041798 225 HSFVLRLLDLFDSEDQREREYLKTILHRIYGKFM 258 (534)
Q Consensus 225 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~ 258 (534)
+.++..|+.++.+.|+..+...-.+|+.|...+-
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999998888888888898887653
No 37
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=48.04 E-value=2.4e+02 Score=28.77 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=101.4
Q ss_pred CcCChHHHHHHHHHHHhccCCCchHHHHHHH--HHHHhccCCCCCcccchhhHHHHHHHHHHhccCcHHHHHHHhhccCC
Q 041798 281 KHNGIAELLEILGSIINGFALPLKEEHKLFL--VRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWP 358 (534)
Q Consensus 281 ~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl--~rvLlPLHk~k~~~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP 358 (534)
.+.|-.|..+++..+++-|+.+-.+.-|.-+ ...+.+. .++ .-.++..+.||-.=..+.++|+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~---------~~e-~iLv~Nsl~kDl~~~N~~iR~lA---- 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI---------AED-VIIVTSSLTKDMTGKEDSYRGPA---- 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT---------SSC-GGGGHHHHHHHHHSSCHHHHHHH----
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC---------HHH-HHHHHHHHHhhcCCCcHhHHHHH----
Confidence 5678889999999999999998877655422 2333332 122 22666677777666667777764
Q ss_pred CCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhccccccccccHHH
Q 041798 359 LTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPAL 438 (534)
Q Consensus 359 ~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL 438 (534)
|.-+..|. +++ +..++..-+-+|+.+.|.-|.-.|+.-. ..++..+.+.+ .-.++.+
T Consensus 125 ----------LRtL~~I~---~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~-----~kL~~~~pe~v-~~~~~~l 181 (355)
T 3tjz_B 125 ----------VRALCQIT---DST----MLQAIERYMKQAIVDKVPSVSSSALVSS-----LHLLKCSFDVV-KRWVNEA 181 (355)
T ss_dssp ----------HHHHHHHC---CTT----THHHHHHHHHHHHTCSSHHHHHHHHHHH-----HHHTTTCHHHH-HTTHHHH
T ss_pred ----------HHHHhcCC---CHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHH-----HHHhccCHHHH-HHHHHHH
Confidence 44444443 233 3556788899999999999999988653 24444444433 3344444
Q ss_pred HHhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 041798 439 ERNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQ 477 (534)
Q Consensus 439 ~~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~ 477 (534)
.... .-=|..|.--|..++.-+.+.|+..+.+....+.
T Consensus 182 ~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~ 219 (355)
T 3tjz_B 182 QEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219 (355)
T ss_dssp HHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence 4332 2235667766777777777777776666655543
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=47.73 E-value=26 Score=32.52 Aligned_cols=129 Identities=10% Similarity=0.035 Sum_probs=72.5
Q ss_pred hHhHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHhhcchHHHHHHhhccccccccccHHHH
Q 041798 364 KEVMFLGELEEVLEATQ---AAEFQRCMVPLFRQIGRCLN-SSHFQVAERALFLWNNDHIRNLINLNRKVILPIIFPALE 439 (534)
Q Consensus 364 KEvlFL~eleeILe~~~---~~~f~~i~~pLF~~la~cl~-S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~paL~ 439 (534)
....-+..|..+++..+ ...+. .++..|.+++. ..|.+|.+.|+.... .+...+...-...++.++|+|.
T Consensus 31 ~R~~a~~~L~~l~~~~~~~~~~~~~----~i~~~L~~~l~kd~~~~V~~~a~~~l~--~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 31 LRKESLEVLEKLLTDHPKLENGEYG----ALVSALKKVITKDSNVVLVAMAGKCLA--LLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp HHHHHHHHHHHHHHHCSSBCCCCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCHH----HHHHHHHHHhccCCCHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHH
Confidence 33455677777776532 22233 45566677774 889999988887763 3333333322334455677777
Q ss_pred HhhhhcchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041798 440 RNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEMKEKETQEKRESTWKRLEDLAAS 503 (534)
Q Consensus 440 ~~sk~HWn~~Vr~la~~vlkil~e~D~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~~ 503 (534)
+.... =+..||..+..++..+.+.-+ ++.++......-.. +.-.-|...+.-|...+..
T Consensus 105 ~~l~d-~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 105 EKFKE-KKPNVVTALREAIDAIYASTS--LEAQQESIVESLSN--KNPSVKSETALFIARALTR 163 (242)
T ss_dssp HGGGC-CCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTT
T ss_pred HHHcC-CCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHH
Confidence 65543 267899999999998876432 22232222111111 1223455666667765544
No 39
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=46.97 E-value=1.7e+02 Score=33.64 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=97.5
Q ss_pred cCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCC
Q 041798 223 IDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALP 302 (534)
Q Consensus 223 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~P 302 (534)
.|..-+.+++..+-++|..+|......|..+... .+.=.... .++.+=-...-++. .+.+|...|+..-..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p~~~~~l~----~iL~~s~~~~vr~~----aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-PDAWQKAD----QILQFSTNPQSKFI----ALSILDKLITRKWKL 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-TTGGGGHH----HHHHHCSCHHHHHH----HHHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-chHHHHHH----HHHhhCCCHHHHHH----HHHHHHHHHHhhCcc
Confidence 4445566677766677777777666666655431 11000010 11100000000111 111233333332234
Q ss_pred chHHHHHHHHHHHhccCCCCC--------cccchhhHHHHHHHHHHh-----ccCcHHHHHHHhhccCCCCCC-hhH--h
Q 041798 303 LKEEHKLFLVRALIPLHKPKC--------VSMYHQQLSYCITQFVEK-----DFKLADTVIRGLLKYWPLTNS-SKE--V 366 (534)
Q Consensus 303 LKeEHk~Fl~rvLlPLHk~k~--------~~~y~~qL~yci~qFveK-----Dp~La~~vi~~LLk~WP~tns-~KE--v 366 (534)
+.++.+..+...|+.+..... -.....+++.|+...... -|.+...++..+ - ++. .++ .
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~-~~~~~~~~~l 158 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S-SSVNVCENNM 158 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c-cChHHHHHHH
Confidence 567777877777777654321 023345666777665544 333333333332 1 222 233 2
Q ss_pred HHHHHHHHHHHhCCh------------HHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHhhcc---hHHHHHHhhccccc
Q 041798 367 MFLGELEEVLEATQA------------AEFQRCMVPLFRQIGRCLNS-SHFQVAERALFLWNN---DHIRNLINLNRKVI 430 (534)
Q Consensus 367 lFL~eleeILe~~~~------------~~f~~i~~pLF~~la~cl~S-~hfqVAErAL~~w~N---~~i~~li~~n~~~I 430 (534)
.+|.-+-|.+..... +.+..-...+|..+..++.+ .+..+...||....+ -.-.+.+.. ..+
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~--~~l 236 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE--TNI 236 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS--SSH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh--hhH
Confidence 233333322221111 33445566677777777754 455676666643321 000111111 224
Q ss_pred cccccHHHHHhhhhcchHHHHHHHHHHHHHHHHh
Q 041798 431 LPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDA 464 (534)
Q Consensus 431 lPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~ 464 (534)
++.++..+.. +..++..|..++.-+...
T Consensus 237 l~~l~~~~l~------~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 237 LELLSTKFMT------SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHTHHHH------SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC------CHhHHHHHHHHHHHHHhC
Confidence 4444432221 566666666666655543
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=45.95 E-value=2.6e+02 Score=28.53 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHhhCCcCCHHHH-------------hcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchH
Q 041798 196 PHLQVVYEILLRFVASPETDAKLA-------------KRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRP 262 (534)
Q Consensus 196 pHLqlVYeillrfv~s~~~d~~~a-------------k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~ 262 (534)
+|+.-++..+..++..+.-..+.+ +......++--|+.++..+|+.-|......|..+...+ -..
T Consensus 320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~ 397 (588)
T 1b3u_A 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI--GIR 397 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS--CHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc--CHH
Q ss_pred HHHHHHHHHHHHhhhccCCcCChHHHHHHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhc
Q 041798 263 FIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKD 342 (534)
Q Consensus 263 fIRk~Innif~~FI~e~e~hnGIaELLeIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKD 342 (534)
.+...+-..+..++ +.....--..+++.++.+...+....-.++ +...++.+.+.+.... ...-..|+..++..-
T Consensus 398 ~~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~V-r~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 398 QLSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLGVEFFDEK---LNSLCMAWLVDHVYAI-REAATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCGGGCCHH---HHHHHHHGGGCSSHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcCHHHHHHH---HHHHHHHHhcCCcHHH-HHHHHHHHHHHHHHh
Q ss_pred cC--cHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHH
Q 041798 343 FK--LADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDHIR 420 (534)
Q Consensus 343 p~--La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~ 420 (534)
.. ....++..|.+.+--.+..-....+.-+..+.+.++++. +...++..+.++++.++..|-..|+..+ -
T Consensus 473 ~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~d~~~~Vr~~a~~~l-----~ 544 (588)
T 1b3u_A 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---TTKHMLPTVLRMAGDPVANVRFNVAKSL-----Q 544 (588)
T ss_dssp CHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHHHGGGCSCHHHHHHHHHHH-----H
T ss_pred CchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhhCCCCCchHHHHHHHHH-----H
Q ss_pred HHHhhcccccc-ccccHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 041798 421 NLINLNRKVIL-PIIFPALERNTRGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 421 ~li~~n~~~Il-Pii~paL~~~sk~HWn~~Vr~la~~vlkil~e 463 (534)
.+........+ +.+.|.|.+ ..+-=+..||..+..++..+.+
T Consensus 545 ~l~~~~~~~~~~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 545 KIGPILDNSTLQSEVKPILEK-LTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHGGGSCHHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHhchhhhHHHHHHHHHH-HcCCCchhHHHHHHHHHHHhhc
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=44.36 E-value=1.7e+02 Score=31.83 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=56.2
Q ss_pred hhhHH----HHHHHHHH---hccCc-HHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 041798 328 HQQLS----YCITQFVE---KDFKL-ADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCL 399 (534)
Q Consensus 328 ~~qL~----yci~qFve---KDp~L-a~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl 399 (534)
+..+. +|+..|.+ ..+.. ...+++.+.+.++..++.-+...|.-+..+.-.. |+ .+ ..+-..+..|.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~-~~---~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE-VK---ATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG-GH---HHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH-HH---HHHHHHHHHHh
Confidence 44565 88888854 33333 3477888888888887777777777777765544 32 12 22334455566
Q ss_pred C--CCCHHHHHHHHHhhc
Q 041798 400 N--SSHFQVAERALFLWN 415 (534)
Q Consensus 400 ~--S~hfqVAErAL~~w~ 415 (534)
. |.+..|=+||..+|.
T Consensus 568 ~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHSCSSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 6 999999999999984
No 42
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=43.13 E-value=1e+02 Score=27.59 Aligned_cols=90 Identities=12% Similarity=0.257 Sum_probs=55.2
Q ss_pred HHHHHHHhC-ChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhc------chHHHHHHhhccccccccc-cHHHHHhh
Q 041798 371 ELEEVLEAT-QAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWN------NDHIRNLINLNRKVILPII-FPALERNT 442 (534)
Q Consensus 371 eleeILe~~-~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~IlPii-~paL~~~s 442 (534)
.|.+|...+ +.++|..||.-|.+||.. ...+..+.-.||.+.. ++.++.-+.++...|..+= |.-+.. .
T Consensus 25 ~m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~~~~~i~~L~~F~y~d~-~ 101 (144)
T 1eyh_A 25 LMSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDR-D 101 (144)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCT-T
T ss_pred HHHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHHHHHHHHhhHHHhhhccceeeCC-C
Confidence 345666665 778899999999998863 2246788888887662 3444444433332221110 000011 1
Q ss_pred hhcchHHHHHHHHHHHHHHHH
Q 041798 443 RGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 443 k~HWn~~Vr~la~~vlkil~e 463 (534)
-.-|...||..|..++.+|.|
T Consensus 102 g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 102 GKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp SCBCHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHCC
Confidence 235888999999999999865
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=36.80 E-value=3.8e+02 Score=27.78 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=60.4
Q ss_pred CHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHH-HHHHHHHhhhccCCcCChHHH----H
Q 041798 215 DAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKA-INNIFYRFIFETEKHNGIAEL----L 289 (534)
Q Consensus 215 d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~-Innif~~FI~e~e~hnGIaEL----L 289 (534)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.....|..+... .-..+..++...........+ .
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 34444555666678899999999999999999999999877555556555332 223444444332222222222 3
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhccCCCCC
Q 041798 290 EILGSIINGFALPLKEEHKLFLVRALIPLHKPKC 323 (534)
Q Consensus 290 eIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~ 323 (534)
..+..+..+-..........-...+|..|.....
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~ 245 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC
Confidence 3333333333222222222223455555655543
No 44
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=36.22 E-value=33 Score=30.93 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhc------chHHHHHHhhccccccccc-cHHHHH
Q 041798 368 FLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWN------NDHIRNLINLNRKVILPII-FPALER 440 (534)
Q Consensus 368 FL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~IlPii-~paL~~ 440 (534)
.+.||..+...-..+.+..+|.-|+++|.. .|+| |.-.||.+.. ++.|+..+.+|...|=-.. |-....
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~--k~~~--vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~d 106 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDN--KSPI--VKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPD 106 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTS--SSHH--HHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCC
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcC--CCcc--eeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 356666665444445578888888888876 3444 6667776553 5677777777764331110 100000
Q ss_pred hh-hhcchHHHHHHHHHHHHHHHHhc
Q 041798 441 NT-RGHWNQAVQSLTLNVRKIFSDAD 465 (534)
Q Consensus 441 ~s-k~HWn~~Vr~la~~vlkil~e~D 465 (534)
-. -.-.+..||..|..++.+|.+-+
T Consensus 107 p~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 107 PLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred cccccchhHHHHHHHHHHHHHHhCcC
Confidence 00 13467899999999999886543
No 45
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=36.00 E-value=5.6e+02 Score=29.50 Aligned_cols=109 Identities=13% Similarity=0.221 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHhhcchHHHHHHhhcc---------ccccccccHHHHHhhhh----cchH------
Q 041798 388 MVPLFRQIGRCLNSSHFQVAERALFLWNNDHIRNLINLNR---------KVILPIIFPALERNTRG----HWNQ------ 448 (534)
Q Consensus 388 ~~pLF~~la~cl~S~hfqVAErAL~~w~N~~i~~li~~n~---------~~IlPii~paL~~~sk~----HWn~------ 448 (534)
..++...+-+|.+-+...|++.++.||.. ++....... +.+++-+++.+.+.++- .|+.
T Consensus 330 l~~ll~~lL~~~~~~~deVs~~t~~Fw~~--~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed 407 (980)
T 3ibv_A 330 LYNLFPYLIRYLSDDYDETSTAVFPFLSD--LLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE 407 (980)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHTTHHHHHH--HHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHH--HHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH
Confidence 34567777788888899999999999973 333332211 13445555555544322 4764
Q ss_pred -----HHHHHHHHHHHHHHHhcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041798 449 -----AVQSLTLNVRKIFSDADQALFDE----CLARFQEDEMKEKETQEKRESTWKRLEDLAAS 503 (534)
Q Consensus 449 -----~Vr~la~~vlkil~e~D~~lf~~----c~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~~ 503 (534)
..|.-...++..+.-++++++-. .....-...-. ......|+.+|...-.
T Consensus 408 ~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~-----~~~~~~W~~~EaaL~~ 466 (980)
T 3ibv_A 408 EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAAT-----LSPENSWQLIEFALYE 466 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHH
Confidence 45655557777777778877766 33322211100 0013579999988643
No 46
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=35.03 E-value=31 Score=26.17 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=36.6
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHH
Q 041798 290 EILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQ 337 (534)
Q Consensus 290 eIlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~q 337 (534)
+++.|+|+.- -|.++||.++...|=-.-..+.+..|||-|...|..
T Consensus 5 sViRSvikSS--~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKSS--RLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHHS--CSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 4667888654 477899999988888888888999999888776653
No 47
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=34.43 E-value=4.5e+02 Score=29.96 Aligned_cols=87 Identities=10% Similarity=0.209 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHhccC-------cHHHHHHHhhccCCC-CCChhHhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 041798 328 HQQLSYCITQFVEKDFK-------LADTVIRGLLKYWPL-TNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCL 399 (534)
Q Consensus 328 ~~qL~yci~qFveKDp~-------La~~vi~~LLk~WP~-tns~KEvlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl 399 (534)
.+.+...+..|+++.+. +.+.++..++.-.-. ....++..+|.-+..++..+. +.+...+..++..+..|.
T Consensus 728 ~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~ 806 (1049)
T 3m1i_C 728 KKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECT 806 (1049)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHH
Confidence 34444556666655431 123343334433211 112345678888888888765 234444445555555553
Q ss_pred ----C---CCCHHHHHHHHHhhc
Q 041798 400 ----N---SSHFQVAERALFLWN 415 (534)
Q Consensus 400 ----~---S~hfqVAErAL~~w~ 415 (534)
+ +++..|.+..+.+..
T Consensus 807 ~~~i~~~~~~~pd~~~~~f~ll~ 829 (1049)
T 3m1i_C 807 LDMINKDFTEYPEHRVEFYKLLK 829 (1049)
T ss_dssp HHHHSSCSSSSHHHHHHHHHHHH
T ss_pred HHHHhcchhhCHHHHHHHHHHHH
Confidence 2 457777777665553
No 48
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=33.94 E-value=52 Score=38.12 Aligned_cols=160 Identities=9% Similarity=0.074 Sum_probs=79.8
Q ss_pred HHHHHHHhccCCCchHH----HHHHHHHHHhccCCC----CCcccchhhHHHHHHHHHHhc-cCcHHHHHHHhhccCCCC
Q 041798 290 EILGSIINGFALPLKEE----HKLFLVRALIPLHKP----KCVSMYHQQLSYCITQFVEKD-FKLADTVIRGLLKYWPLT 360 (534)
Q Consensus 290 eIlgSIInGfa~PLKeE----Hk~Fl~rvLlPLHk~----k~~~~y~~qL~yci~qFveKD-p~La~~vi~~LLk~WP~t 360 (534)
.+|...|+ .+.++ .+..+...|+.+... ..-...-.+|+.+++.++..+ |.-=...+..|+..|-..
T Consensus 65 ~~L~~~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~ 140 (980)
T 3ibv_A 65 QTLSEKVR----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS 140 (980)
T ss_dssp HHHHHHHH----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHH----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC
Confidence 34445555 33445 566666666666543 111223467777777766554 221122233333333222
Q ss_pred CC-hhHhHHHHHHHHHHHhC-------Ch---------------HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHh---h
Q 041798 361 NS-SKEVMFLGELEEVLEAT-------QA---------------AEFQRCMVPLFRQIGRCLNSSHFQVAERALFL---W 414 (534)
Q Consensus 361 ns-~KEvlFL~eleeILe~~-------~~---------------~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~---w 414 (534)
+. .--..||.-+..|-|-+ +. ..+..+....+..+..|..+.+-.+++.+|.. |
T Consensus 141 ~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~ 220 (980)
T 3ibv_A 141 SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQW 220 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 22 12234555555332211 11 11444466677888888877888877776643 3
Q ss_pred cchHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHH
Q 041798 415 NNDHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFS 462 (534)
Q Consensus 415 ~N~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~ 462 (534)
-+---.+++.. ..+++.+|..|. +..+|..|..++..+.
T Consensus 221 i~wi~~~~i~~--~~ll~~l~~~L~-------~~~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 221 VSWININLIVN--EPCMNLLYSFLQ-------IEELRCAACETMTEIV 259 (980)
T ss_dssp TTTSCHHHHHC--HHHHHHHHHHTT-------SHHHHHHHHHHHHHHH
T ss_pred HhhcCHHhhhc--chHHHHHHHHcC-------ChHHHHHHHHHHHHHH
Confidence 33222333322 334455544332 2677888888776554
No 49
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=29.33 E-value=1.1e+02 Score=27.18 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCCh----------HHHHHHHHHHHHHHHHhh
Q 041798 330 QLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQA----------AEFQRCMVPLFRQIGRCL 399 (534)
Q Consensus 330 qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~----------~~f~~i~~pLF~~la~cl 399 (534)
+-..-++..+..+.+-+..++..+.++--++.+.+.+.+|.-+..|+..... ..|.+.+..+|..+..|.
T Consensus 24 ~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~ 103 (145)
T 3d9j_A 24 AKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCP 103 (145)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCC
Confidence 3344455556666666666666666666667778889999999988875432 246677777887666555
Q ss_pred CCCCHHHHHHHHHhhcc
Q 041798 400 NSSHFQVAERALFLWNN 416 (534)
Q Consensus 400 ~S~hfqVAErAL~~w~N 416 (534)
..+-.-.+|-+.+|..
T Consensus 104 -~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 104 -GDDKSKIVRVLNLWQK 119 (145)
T ss_dssp -GGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcC
Confidence 6777788889999973
No 50
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=28.85 E-value=1.2e+02 Score=27.34 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=56.3
Q ss_pred HHHHHHHhC-ChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhc------chHHHHHHhhccccccccccHHHHH--h
Q 041798 371 ELEEVLEAT-QAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWN------NDHIRNLINLNRKVILPIIFPALER--N 441 (534)
Q Consensus 371 eleeILe~~-~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~------N~~i~~li~~n~~~IlPii~paL~~--~ 441 (534)
.|.+|...+ +..+|..||.-|.+||...- ..+....-.||.+.. .+.++.-+.+|...|=. + ....- .
T Consensus 31 ~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i~~-L-~~F~~~d~ 107 (150)
T 3onk_A 31 LMDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRI-L-ETFHYIDS 107 (150)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHHHG-G-GGCCCBCT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-h-hcccccCC
Confidence 355666655 78899999999999988421 136788888886662 34444444444322211 1 11000 1
Q ss_pred hhhcchHHHHHHHHHHHHHHHH
Q 041798 442 TRGHWNQAVQSLTLNVRKIFSD 463 (534)
Q Consensus 442 sk~HWn~~Vr~la~~vlkil~e 463 (534)
.-..|-..||..|..++.+|.|
T Consensus 108 ~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 108 QGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp TSCBCHHHHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHHHHcC
Confidence 1235889999999999998854
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=27.92 E-value=5.6e+02 Score=27.06 Aligned_cols=110 Identities=10% Similarity=0.163 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 041798 129 DIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDPEEEEPAMEPAWPHLQVVYEILLRF 208 (534)
Q Consensus 129 e~Kr~tL~EL~~~v~~~~~~lte~v~~~i~~Mi~~NIFR~lPp~~~~~~~~~~~d~eedep~~e~aWpHLqlVYeillrf 208 (534)
+.|+.++..|+-+...|.. . ...+.+++++ +. .+ . -..=+++|-.+..+
T Consensus 28 ~~k~~~~~kli~~~~~G~d-~-~~~~~~vi~l--------~~-s~-------~-------------~~~Krl~yl~l~~~ 76 (591)
T 2vgl_B 28 EKRKEAVKKVIAAMTVGKD-V-SSLFPDVVNC--------MQ-TD-------N-------------LELKKLVYLYLMNY 76 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCC-C-GGGHHHHHHT--------TS-SS-------C-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC-h-HHHHHHHHHH--------hC-CC-------C-------------HHHHHHHHHHHHHH
Confidence 4678889999866655542 2 2344444432 11 10 0 12347888877776
Q ss_pred hhCCcCCHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHH-------------HhhcccCchHHHHHHHHHHHHHh
Q 041798 209 VASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHR-------------IYGKFMVHRPFIRKAINNIFYRF 275 (534)
Q Consensus 209 v~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhr-------------IY~Kf~~~R~fIRk~Innif~~F 275 (534)
... ++..+-- .+..|...+.++||.-|...-..|-+ +........+++|+.....++++
T Consensus 77 ~~~---~~e~~~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i 148 (591)
T 2vgl_B 77 AKS---QPDMAIM-----AVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL 148 (591)
T ss_dssp HHH---SHHHHHT-----THHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred ccc---CchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 542 2222211 12345666777888777653333322 22222334577877777766665
Q ss_pred hh
Q 041798 276 IF 277 (534)
Q Consensus 276 I~ 277 (534)
..
T Consensus 149 ~~ 150 (591)
T 2vgl_B 149 HD 150 (591)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 52
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=27.86 E-value=3.2e+02 Score=26.61 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=52.8
Q ss_pred HHHHHhccCcHHHHHHHhhccCCCCCChhH--hHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q 041798 336 TQFVEKDFKLADTVIRGLLKYWPLTNSSKE--VMFLGELEEVLEATQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFL 413 (534)
Q Consensus 336 ~qFveKDp~La~~vi~~LLk~WP~tns~KE--vlFL~eleeILe~~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~ 413 (534)
..-+.+||.|.+.++++++-+ .+++.-+ -...+.|+|+... .++ +...+..-|...++.....|..+|+..
T Consensus 41 el~~~~dp~ll~~~l~~il~~--~~~~~~~vrk~~~~Fi~e~~~~-k~~----l~~~~l~~L~~Ll~d~d~~V~K~~I~~ 113 (257)
T 3gs3_A 41 ETVLGSCAELAEEFLESVLSL--AHDSNMEVRKQVVAFVEQVCKV-KVE----LLPHVINVVSMLLRDNSAQVIKRVIQA 113 (257)
T ss_dssp HHHTTTTGGGHHHHHHHHHGG--GGCSCHHHHHHHHHHHHHHHHH-CGG----GHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHccCHhHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334678999999999999986 2333322 2233444444421 122 333344444444556667777777655
Q ss_pred hcchHHHHHHhhccccccccccHHHHHhh------hhcchHHH
Q 041798 414 WNNDHIRNLINLNRKVILPIIFPALERNT------RGHWNQAV 450 (534)
Q Consensus 414 w~N~~i~~li~~n~~~IlPii~paL~~~s------k~HWn~~V 450 (534)
.. .+||.+|--+..+. ...|+.-.
T Consensus 114 ~~-------------~iY~~~l~~i~~~~~~~~~~~~~W~~m~ 143 (257)
T 3gs3_A 114 CG-------------SIYKNGLQYLCSLMEPGDSAEQAWNILS 143 (257)
T ss_dssp HH-------------HHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 44 45566666555543 35676443
No 53
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=27.57 E-value=6.1e+02 Score=27.37 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=44.5
Q ss_pred CcHHHHHHHhhccCCCCCCh-----hHhHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhhCC
Q 041798 344 KLADTVIRGLLKYWPLTNSS-----KEVMFLGELEEVLEATQ-AAEFQRCMVPLFRQIGRCLNS 401 (534)
Q Consensus 344 ~La~~vi~~LLk~WP~tns~-----KEvlFL~eleeILe~~~-~~~f~~i~~pLF~~la~cl~S 401 (534)
.+...+.+.++-.|=..... .++-+|.-+.|+...+. .++-..+...||..|-..+=-
T Consensus 260 kFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 260 RFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCC
Confidence 35556667777777776665 78999999999999987 666677888899888876643
No 54
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=26.88 E-value=3.5e+02 Score=24.28 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhcc-----hHHHHHHhhccccccccccHHHHHhhhhcchHHHHHHHHHHHHHHHHhc
Q 041798 391 LFRQIGRCLNSSHFQVAERALFLWNN-----DHIRNLINLNRKVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDAD 465 (534)
Q Consensus 391 LF~~la~cl~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~paL~~~sk~HWn~~Vr~la~~vlkil~e~D 465 (534)
....|..++.+++..|.+.|+....| +.....+.+ .-++|.|.+..+. -+..++..+..+|.-+..-+
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQLLSS-PNEQILQEALWALSNIASGG 211 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTCHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH------CCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCC
Confidence 55667777888888888888755433 222122111 2234445544433 38889999998888876555
Q ss_pred HHH
Q 041798 466 QAL 468 (534)
Q Consensus 466 ~~l 468 (534)
+..
T Consensus 212 ~~~ 214 (252)
T 4db8_A 212 NEQ 214 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 55
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=26.55 E-value=7.2e+02 Score=27.88 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhc-----cCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHH
Q 041798 302 PLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKD-----FKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVL 376 (534)
Q Consensus 302 PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKD-----p~La~~vi~~LLk~WP~tns~KEvlFL~eleeIL 376 (534)
.+.++.+..++..|+....... ..-..+++.||......| |.|...++..+ -..+.......|.-+.+|+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CSSCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Confidence 3557777777777777654433 344568888888776553 44444444333 1223333344455555555
Q ss_pred H
Q 041798 377 E 377 (534)
Q Consensus 377 e 377 (534)
+
T Consensus 152 ~ 152 (960)
T 1wa5_C 152 K 152 (960)
T ss_dssp G
T ss_pred H
Confidence 5
No 56
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=25.51 E-value=4.2e+02 Score=31.08 Aligned_cols=32 Identities=6% Similarity=0.227 Sum_probs=23.8
Q ss_pred cCHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 041798 223 IDHSFVLRLLDLFDSEDQREREYLKTILHRIY 254 (534)
Q Consensus 223 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY 254 (534)
+|-.-+.+++..+.++|+.+|......|..+-
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q 56 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLK 56 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56667778888888888888887777765543
No 57
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=24.91 E-value=4.4e+02 Score=26.03 Aligned_cols=179 Identities=14% Similarity=0.136 Sum_probs=97.5
Q ss_pred CHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHHhhhccC-CcCCh-HHHHHHHHHHHhccC
Q 041798 224 DHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMV-HRPFIRKAINNIFYRFIFETE-KHNGI-AELLEILGSIINGFA 300 (534)
Q Consensus 224 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~fIRk~Innif~~FI~e~e-~hnGI-aELLeIlgSIInGfa 300 (534)
+..-+.-|+++++.+|+.=+..---+|..+...-.+ .| +..+.+.|-++|.-+. .-.+| --.++.++.++-|-
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~---~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v- 106 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLR---MMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV- 106 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHH---HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccccc---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-
Confidence 344567799999999998887766666666643211 22 2334455666653321 11222 34688889999775
Q ss_pred CCchHHHHHHHHHHHhccCCCCCc--ccchhhHHHHHHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHh
Q 041798 301 LPLKEEHKLFLVRALIPLHKPKCV--SMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEA 378 (534)
Q Consensus 301 ~PLKeEHk~Fl~rvLlPLHk~k~~--~~y~~qL~yci~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~ 378 (534)
||.++.-.-+..+|.-+.+.+.= ..|-.....-+ +=-+++..|+..+.+.=-..|..=+.+=|.-+.+|...
T Consensus 107 -pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 107 -PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp -CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred -CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 77777666667778777774421 11111111100 11112223333333222222333333333333333322
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhc
Q 041798 379 TQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWN 415 (534)
Q Consensus 379 ~~~~~f~~i~~pLF~~la~cl~S~hfqVAErAL~~w~ 415 (534)
..+. .+..++|.-|...++|.+--+.|+||....
T Consensus 181 S~D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le 214 (265)
T 3b2a_A 181 SADS---GHLTLILDEIPSLLQNDNEFIVELALDVLE 214 (265)
T ss_dssp CSSC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHH
T ss_pred cCCH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2211 134568888999999999999999998764
No 58
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=24.76 E-value=5.9e+02 Score=26.28 Aligned_cols=195 Identities=11% Similarity=0.090 Sum_probs=94.4
Q ss_pred CHHHHhcccCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchHHHHHH-HHHHHHHhhhccCCcCChHHHHH---
Q 041798 215 DAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKA-INNIFYRFIFETEKHNGIAELLE--- 290 (534)
Q Consensus 215 d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~fIRk~-Innif~~FI~e~e~hnGIaELLe--- 290 (534)
++...+..++..-|-.|+.++.|+|+.-|+..-..|..|-+.-...|..|... +-..+...+..........++++
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 33444455666678899999999999999999999998876555556555332 22345555543322222223333
Q ss_pred -HHHHHHhccCCCchHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHHhc---------cCcHHHHHHHhhccCCCC
Q 041798 291 -ILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKD---------FKLADTVIRGLLKYWPLT 360 (534)
Q Consensus 291 -IlgSIInGfa~PLKeEHk~Fl~rvLlPLHk~k~~~~y~~qL~yci~qFveKD---------p~La~~vi~~LLk~WP~t 360 (534)
.+..+..+-..........-...+|..|.....-.. ...-..|+......+ ..+...++.. ++ ..
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l-L~---~~ 305 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL-LG---AT 305 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH-HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH-HT---CS
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH-HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH-hc---CC
Confidence 233333333222222222223455555555543221 111222332222222 2233333332 22 22
Q ss_pred CChhHhHHHHHHHHHHHhCChHHHHHHH-HHHHHHHHHhhCCCCHHHHHHHHHhhc
Q 041798 361 NSSKEVMFLGELEEVLEATQAAEFQRCM-VPLFRQIGRCLNSSHFQVAERALFLWN 415 (534)
Q Consensus 361 ns~KEvlFL~eleeILe~~~~~~f~~i~-~pLF~~la~cl~S~hfqVAErAL~~w~ 415 (534)
+..-+..-+.-|..|.. -+++.-..+. .-....|..++.|++-.|-+.|+..+.
T Consensus 306 ~~~v~~~a~~aL~nl~~-~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp CHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHc-cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22222223333443322 1222222221 224456677888999888777765543
No 59
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=24.50 E-value=5e+02 Score=25.30 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHhhCCcCCHHHHhcccCHHHHHHHHh-hcCCCChHHHHHHHHHHHHHhhcccCch
Q 041798 197 HLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLD-LFDSEDQREREYLKTILHRIYGKFMVHR 261 (534)
Q Consensus 197 HLqlVYeillrfv~s~~~d~~~ak~~id~~Fi~~Ll~-lfdSeDpRERd~LktiLhrIY~Kf~~~R 261 (534)
|-....+.|..++++.+ .+..+....-+..|+. ++.|+|+.=|...-.+|-.|-+.-...|
T Consensus 56 ~k~~Al~~L~~lv~~~d----na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~ 117 (296)
T 1xqr_A 56 EREGALELLADLCENMD----NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 117 (296)
T ss_dssp HHHHHHHHHHHHHTSHH----HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhChh----hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 44556777888887533 3444544455678999 9999999999999988888876544333
No 60
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=24.00 E-value=7.8e+02 Score=27.41 Aligned_cols=215 Identities=7% Similarity=0.064 Sum_probs=102.7
Q ss_pred CCcchHHHHHHHHHHhhCCcCCHH--------------HHhcccCHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhhcc
Q 041798 194 AWPHLQVVYEILLRFVASPETDAK--------------LAKRYIDHSFVLRLLDLFDS--EDQREREYLKTILHRIYGKF 257 (534)
Q Consensus 194 aWpHLqlVYeillrfv~s~~~d~~--------------~ak~~id~~Fi~~Ll~lfdS--eDpRERd~LktiLhrIY~Kf 257 (534)
.+.+|.-|.+.+++.+. +..... ....|++ .++..|+.++++ -|.+++..+-+.+-.|....
T Consensus 540 ~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 540 NPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ---CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 34778888888877663 332211 1223332 356677778887 57899999998888888754
Q ss_pred c--CchHHHHHHHHHHHH---HhhhccC----CcCChHHHHHHHHHHHhccCCCchHH-------H-HHHHHHHHhc---
Q 041798 258 M--VHRPFIRKAINNIFY---RFIFETE----KHNGIAELLEILGSIINGFALPLKEE-------H-KLFLVRALIP--- 317 (534)
Q Consensus 258 ~--~~R~fIRk~Innif~---~FI~e~e----~hnGIaELLeIlgSIInGfa~PLKeE-------H-k~Fl~rvLlP--- 317 (534)
. ..-+++.+-+..++- +.+.... .-.-+.+.|+.++.++.+......+. | -.=+...++|
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 697 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFK 697 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHH
Confidence 2 122344443332222 2221111 11235667778888877654322110 0 0001111222
Q ss_pred -cCC--CCCcccchhhHHHHHHH---HHHhc-cCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChH-H----HH
Q 041798 318 -LHK--PKCVSMYHQQLSYCITQ---FVEKD-FKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAA-E----FQ 385 (534)
Q Consensus 318 -LHk--~k~~~~y~~qL~yci~q---FveKD-p~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~-~----f~ 385 (534)
+.. ..... .......++.. .+.++ ..+.+.++.+|+...-.+ .+..||+-+..++.....+ + +.
T Consensus 698 ~~l~~~~~~~~-v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~~~~~l~l~~~~i~~~~~~~~~~~~l~ 773 (971)
T 2x1g_F 698 RIAEMWVEEID-VLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---CCAPTLEISKTAIVMFFKDEGCKPLMQ 773 (971)
T ss_dssp HHHHHTTTCHH-HHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----CCHHHHHHHHHHHTTCCC-----HHHH
T ss_pred HHHHhccccHH-HHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCCcchHHHHH
Confidence 111 11111 11112222222 11122 225667777887665543 3478999999999877543 2 33
Q ss_pred HHHHHHHHHHHHhhCC-------CCHHHHHHHHHhh
Q 041798 386 RCMVPLFRQIGRCLNS-------SHFQVAERALFLW 414 (534)
Q Consensus 386 ~i~~pLF~~la~cl~S-------~hfqVAErAL~~w 414 (534)
.+..+++..+-..+++ .+-.|++..+.+.
T Consensus 774 ~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll 809 (971)
T 2x1g_F 774 QLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCL 809 (971)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHH
Confidence 3334444433333333 3566777766555
No 61
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.90 E-value=3.9e+02 Score=23.99 Aligned_cols=77 Identities=16% Similarity=0.054 Sum_probs=51.3
Q ss_pred HHHHHHhccCcHHHHHHHhhccCCCCCChhHhHHHHHHHHHHHhCChHHHHH-----HHHHHHHHHHHhhCCCCHHHHHH
Q 041798 335 ITQFVEKDFKLADTVIRGLLKYWPLTNSSKEVMFLGELEEVLEATQAAEFQR-----CMVPLFRQIGRCLNSSHFQVAER 409 (534)
Q Consensus 335 i~qFveKDp~La~~vi~~LLk~WP~tns~KEvlFL~eleeILe~~~~~~f~~-----i~~pLF~~la~cl~S~hfqVAEr 409 (534)
|...+..++.-+..+++.|.|.=-..|+.-+..-|..++.++..|.+.--.. ++..|.+.+. ...|.+|-++
T Consensus 39 icD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~---~~~~~~Vk~k 115 (163)
T 1x5b_A 39 ICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK---NKAHPKVCEK 115 (163)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH---TTCCHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc---cCCCHHHHHH
Confidence 4456777788788888888665555788888889999998888887533211 2222222221 3478899999
Q ss_pred HHHhh
Q 041798 410 ALFLW 414 (534)
Q Consensus 410 AL~~w 414 (534)
++.+.
T Consensus 116 il~li 120 (163)
T 1x5b_A 116 LKSLM 120 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
Done!