Query 041800
Match_columns 223
No_of_seqs 112 out of 1257
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 5.6E-40 1.2E-44 245.6 24.0 216 4-219 8-227 (231)
2 PRK09481 sspA stringent starva 100.0 6.7E-39 1.4E-43 245.0 23.1 198 4-207 9-206 (211)
3 PLN02473 glutathione S-transfe 100.0 8.6E-36 1.9E-40 228.4 19.7 192 6-202 3-210 (214)
4 PRK15113 glutathione S-transfe 100.0 2.3E-35 5E-40 225.9 20.1 194 1-205 1-210 (214)
5 PLN02395 glutathione S-transfe 100.0 1.7E-34 3.7E-39 221.4 19.3 192 6-203 3-210 (215)
6 PRK10542 glutathionine S-trans 100.0 1.3E-34 2.8E-39 219.9 17.1 189 6-203 1-197 (201)
7 PRK13972 GSH-dependent disulfi 100.0 2E-34 4.4E-39 220.9 17.9 187 6-203 2-205 (215)
8 TIGR01262 maiA maleylacetoacet 100.0 6.6E-34 1.4E-38 217.3 19.5 190 7-204 1-205 (210)
9 TIGR00862 O-ClC intracellular 100.0 3.9E-33 8.4E-38 213.9 23.4 197 11-218 16-235 (236)
10 COG0625 Gst Glutathione S-tran 100.0 9.7E-34 2.1E-38 216.6 19.9 185 6-198 1-199 (211)
11 PRK10357 putative glutathione 100.0 2.9E-33 6.4E-38 212.5 21.1 192 6-203 1-200 (202)
12 KOG0868 Glutathione S-transfer 100.0 1.3E-33 2.7E-38 199.3 14.7 196 1-204 1-208 (217)
13 PRK11752 putative S-transferas 100.0 3.3E-32 7.2E-37 214.1 20.8 196 4-204 43-259 (264)
14 PLN02378 glutathione S-transfe 100.0 1.6E-31 3.5E-36 204.3 20.5 188 10-210 16-206 (213)
15 PTZ00057 glutathione s-transfe 100.0 9.4E-32 2E-36 204.6 18.4 191 1-205 1-201 (205)
16 PLN02817 glutathione dehydroge 100.0 8.2E-31 1.8E-35 205.3 21.0 190 11-213 70-261 (265)
17 PRK10387 glutaredoxin 2; Provi 100.0 2E-30 4.4E-35 198.1 16.2 179 6-198 1-208 (210)
18 KOG0867 Glutathione S-transfer 100.0 4.9E-30 1.1E-34 197.1 18.2 196 5-205 2-211 (226)
19 TIGR02182 GRXB Glutaredoxin, G 100.0 3.3E-28 7.2E-33 185.4 16.6 176 7-197 1-206 (209)
20 KOG1695 Glutathione S-transfer 100.0 2.5E-27 5.4E-32 176.6 17.2 194 3-205 1-202 (206)
21 KOG4420 Uncharacterized conser 99.9 6.4E-26 1.4E-30 169.4 13.3 205 5-212 26-296 (325)
22 KOG1422 Intracellular Cl- chan 99.9 2.3E-22 4.9E-27 146.3 17.7 194 13-216 20-218 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 5.7E-23 1.2E-27 179.3 17.1 156 6-196 3-159 (722)
24 PF13417 GST_N_3: Glutathione 99.8 1.2E-20 2.6E-25 120.4 8.2 74 8-82 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 2.3E-19 4.9E-24 113.9 9.0 73 6-79 1-73 (73)
26 cd03052 GST_N_GDAP1 GST_N fami 99.8 1.9E-19 4.1E-24 114.0 8.0 70 6-76 1-73 (73)
27 cd03058 GST_N_Tau GST_N family 99.8 4.9E-19 1.1E-23 112.7 8.9 74 6-79 1-74 (74)
28 KOG4244 Failed axon connection 99.8 4E-18 8.7E-23 128.5 14.9 178 5-193 45-272 (281)
29 cd03061 GST_N_CLIC GST_N famil 99.8 4.3E-19 9.4E-24 115.6 8.4 70 12-82 20-89 (91)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 7.9E-19 1.7E-23 112.5 8.0 73 6-79 2-77 (77)
31 cd03060 GST_N_Omega_like GST_N 99.8 1.4E-18 3.1E-23 109.6 8.4 68 7-75 2-70 (71)
32 cd03076 GST_N_Pi GST_N family, 99.8 9.1E-19 2E-23 111.0 7.3 72 6-78 2-73 (73)
33 cd03045 GST_N_Delta_Epsilon GS 99.8 1.7E-18 3.7E-23 110.2 8.4 71 6-77 1-74 (74)
34 COG2999 GrxB Glutaredoxin 2 [P 99.8 1.3E-17 2.7E-22 118.4 13.3 178 6-197 1-207 (215)
35 cd03053 GST_N_Phi GST_N family 99.8 2.8E-18 6E-23 109.8 9.0 72 6-78 2-76 (76)
36 cd03185 GST_C_Tau GST_C family 99.8 2.1E-17 4.6E-22 116.0 13.0 124 90-213 2-125 (126)
37 cd03050 GST_N_Theta GST_N fami 99.8 5.8E-18 1.3E-22 108.2 9.0 73 6-79 1-76 (76)
38 KOG3029 Glutathione S-transfer 99.7 4.5E-17 9.9E-22 123.6 13.8 181 5-193 90-354 (370)
39 cd03048 GST_N_Ure2p_like GST_N 99.7 1.1E-17 2.3E-22 108.4 8.9 73 6-80 2-80 (81)
40 cd03055 GST_N_Omega GST_N fami 99.7 9.8E-18 2.1E-22 110.4 8.7 72 4-76 17-89 (89)
41 cd03056 GST_N_4 GST_N family, 99.7 9.4E-18 2E-22 106.4 8.2 70 6-76 1-73 (73)
42 cd03044 GST_N_EF1Bgamma GST_N 99.7 9.3E-18 2E-22 107.0 8.1 70 7-77 2-74 (75)
43 cd03049 GST_N_3 GST_N family, 99.7 9.7E-18 2.1E-22 106.4 7.7 70 6-76 1-73 (73)
44 cd03039 GST_N_Sigma_like GST_N 99.7 7.2E-18 1.6E-22 106.7 7.0 71 6-77 1-72 (72)
45 cd03047 GST_N_2 GST_N family, 99.7 1.9E-17 4.1E-22 105.0 8.0 70 6-76 1-73 (73)
46 cd03037 GST_N_GRX2 GST_N famil 99.7 1.6E-17 3.5E-22 104.8 7.6 70 6-77 1-71 (71)
47 cd03046 GST_N_GTT1_like GST_N 99.7 2.9E-17 6.2E-22 105.0 8.7 73 6-80 1-76 (76)
48 cd03051 GST_N_GTT2_like GST_N 99.7 1.9E-17 4.1E-22 105.2 7.5 70 6-76 1-74 (74)
49 cd03057 GST_N_Beta GST_N famil 99.7 3.4E-17 7.4E-22 104.9 8.5 73 6-80 1-77 (77)
50 cd03042 GST_N_Zeta GST_N famil 99.7 3.4E-17 7.4E-22 103.8 7.9 70 6-76 1-73 (73)
51 cd03040 GST_N_mPGES2 GST_N fam 99.7 9.2E-17 2E-21 102.9 7.6 72 5-79 1-76 (77)
52 cd03190 GST_C_ECM4_like GST_C 99.7 5.6E-16 1.2E-20 111.0 11.9 126 90-217 3-132 (142)
53 PF13409 GST_N_2: Glutathione 99.7 1.2E-16 2.6E-21 100.3 7.3 65 13-78 1-70 (70)
54 cd03077 GST_N_Alpha GST_N fami 99.7 2.4E-16 5.2E-21 101.3 8.7 72 5-80 1-77 (79)
55 cd03196 GST_C_5 GST_C family, 99.7 5.4E-16 1.2E-20 107.1 11.0 110 88-201 3-115 (115)
56 cd03080 GST_N_Metaxin_like GST 99.7 2.4E-16 5.2E-21 100.4 8.5 67 6-80 2-75 (75)
57 cd03186 GST_C_SspA GST_N famil 99.7 8.1E-16 1.8E-20 104.9 11.6 105 90-200 2-106 (107)
58 cd03075 GST_N_Mu GST_N family, 99.7 2.1E-16 4.4E-21 102.3 8.1 72 7-79 2-82 (82)
59 cd03184 GST_C_Omega GST_C fami 99.7 8.8E-16 1.9E-20 107.5 11.6 120 91-213 2-123 (124)
60 cd03038 GST_N_etherase_LigE GS 99.6 6.8E-16 1.5E-20 100.5 7.9 68 11-80 13-84 (84)
61 PF02798 GST_N: Glutathione S- 99.6 9.8E-16 2.1E-20 97.7 7.9 71 7-77 2-76 (76)
62 COG0435 ECM4 Predicted glutath 99.6 2.1E-15 4.6E-20 114.4 10.8 195 4-202 50-285 (324)
63 cd03043 GST_N_1 GST_N family, 99.6 1.6E-15 3.5E-20 96.0 7.8 66 10-76 6-73 (73)
64 cd00570 GST_N_family Glutathio 99.6 2.4E-15 5.1E-20 94.1 8.2 70 6-76 1-71 (71)
65 cd03188 GST_C_Beta GST_C famil 99.6 4.8E-15 1E-19 102.1 9.9 104 91-201 2-114 (114)
66 KOG2903 Predicted glutathione 99.6 5.6E-15 1.2E-19 111.1 8.6 197 4-203 36-288 (319)
67 cd03203 GST_C_Lambda GST_C fam 99.6 3E-14 6.5E-19 99.1 11.5 115 88-211 1-119 (120)
68 cd03198 GST_C_CLIC GST_C famil 99.6 3.2E-14 6.9E-19 99.7 11.2 107 104-212 9-133 (134)
69 cd03201 GST_C_DHAR GST_C famil 99.6 3.7E-14 8E-19 98.6 11.1 105 105-212 13-119 (121)
70 cd03054 GST_N_Metaxin GST_N fa 99.6 1.3E-14 2.9E-19 91.6 7.8 64 7-78 2-72 (72)
71 cd03177 GST_C_Delta_Epsilon GS 99.6 2.7E-14 6E-19 99.0 10.0 105 91-201 2-110 (118)
72 cd03182 GST_C_GTT2_like GST_C 99.6 7.7E-14 1.7E-18 96.6 12.1 104 88-197 1-117 (117)
73 cd03189 GST_C_GTT1_like GST_C 99.6 6.6E-14 1.4E-18 97.2 11.5 103 86-195 2-119 (119)
74 cd03191 GST_C_Zeta GST_C famil 99.6 2.7E-14 5.9E-19 99.5 9.5 108 90-204 2-120 (121)
75 cd03209 GST_C_Mu GST_C family, 99.5 7.1E-14 1.5E-18 97.4 10.5 109 91-206 2-112 (121)
76 cd03187 GST_C_Phi GST_C family 99.5 6.4E-14 1.4E-18 97.0 10.1 106 91-201 2-118 (118)
77 cd03178 GST_C_Ure2p_like GST_C 99.5 4.5E-14 9.8E-19 97.1 7.7 104 92-201 2-112 (113)
78 cd03181 GST_C_EFB1gamma GST_C 99.5 1.3E-13 2.9E-18 96.2 9.7 109 92-204 2-117 (123)
79 cd03200 GST_C_JTV1 GST_C famil 99.5 1.6E-13 3.5E-18 91.4 9.4 95 72-193 1-95 (96)
80 cd03180 GST_C_2 GST_C family, 99.5 2.6E-13 5.5E-18 92.8 10.7 100 91-197 2-110 (110)
81 cd03210 GST_C_Pi GST_C family, 99.5 1.7E-13 3.7E-18 96.1 9.8 108 91-205 3-114 (126)
82 KOG3027 Mitochondrial outer me 99.5 2E-12 4.4E-17 94.2 14.9 171 13-193 33-247 (257)
83 cd03208 GST_C_Alpha GST_C fami 99.5 3.5E-13 7.7E-18 95.8 10.3 108 91-205 3-117 (137)
84 cd03207 GST_C_8 GST_C family, 99.5 1.2E-13 2.7E-18 93.4 6.4 76 119-202 26-101 (103)
85 cd03195 GST_C_4 GST_C family, 99.5 5.9E-13 1.3E-17 91.7 9.7 103 90-202 2-112 (114)
86 cd03183 GST_C_Theta GST_C fami 99.5 5.9E-13 1.3E-17 93.4 9.1 104 92-201 2-120 (126)
87 PF00043 GST_C: Glutathione S- 99.4 1.5E-12 3.3E-17 86.6 9.4 71 120-195 25-95 (95)
88 cd03206 GST_C_7 GST_C family, 99.4 7E-13 1.5E-17 89.2 7.4 71 120-197 30-100 (100)
89 PF13410 GST_C_2: Glutathione 99.4 3.1E-12 6.7E-17 80.0 7.6 67 120-190 3-69 (69)
90 cd03079 GST_N_Metaxin2 GST_N f 99.3 5E-12 1.1E-16 79.2 7.3 60 12-78 15-74 (74)
91 TIGR02190 GlrX-dom Glutaredoxi 99.3 1.2E-11 2.7E-16 79.3 7.5 72 4-76 8-79 (79)
92 cd03204 GST_C_GDAP1 GST_C fami 99.3 1.3E-11 2.9E-16 83.8 7.8 74 120-197 26-111 (111)
93 cd03179 GST_C_1 GST_C family, 99.3 9.2E-12 2E-16 84.3 7.1 95 91-192 2-105 (105)
94 cd03194 GST_C_3 GST_C family, 99.3 6.5E-11 1.4E-15 81.5 9.7 73 120-202 38-113 (114)
95 PRK10638 glutaredoxin 3; Provi 99.3 4.1E-11 8.8E-16 77.7 8.0 73 3-76 1-74 (83)
96 PF14497 GST_C_3: Glutathione 99.3 2E-11 4.3E-16 81.9 6.6 95 89-193 3-99 (99)
97 KOG3028 Translocase of outer m 99.3 1.2E-09 2.7E-14 85.0 17.2 170 13-193 16-233 (313)
98 cd00299 GST_C_family Glutathio 99.2 2.7E-11 5.9E-16 80.9 6.9 92 96-191 2-100 (100)
99 cd03192 GST_C_Sigma_like GST_C 99.2 8.7E-11 1.9E-15 79.4 8.9 95 91-191 2-104 (104)
100 cd03193 GST_C_Metaxin GST_C fa 99.2 1.2E-10 2.7E-15 76.3 8.1 66 123-192 19-88 (88)
101 cd03029 GRX_hybridPRX5 Glutare 99.2 1.6E-10 3.5E-15 72.7 8.1 71 5-76 2-72 (72)
102 cd03202 GST_C_etherase_LigE GS 99.2 9.1E-11 2E-15 82.0 7.5 68 121-193 56-123 (124)
103 cd03078 GST_N_Metaxin1_like GS 99.1 9.3E-10 2E-14 69.2 7.8 59 12-78 14-72 (73)
104 cd03027 GRX_DEP Glutaredoxin ( 99.0 3E-09 6.4E-14 67.1 7.0 68 5-73 2-70 (73)
105 cd03211 GST_C_Metaxin2 GST_C f 99.0 1.5E-09 3.3E-14 75.9 6.0 72 120-192 54-126 (126)
106 cd03205 GST_C_6 GST_C family, 98.9 1.8E-08 3.9E-13 67.3 9.0 67 118-191 32-98 (98)
107 cd03197 GST_C_mPGES2 GST_C fam 98.9 1.2E-08 2.6E-13 72.3 8.4 115 63-193 29-145 (149)
108 PRK10329 glutaredoxin-like pro 98.9 7.1E-09 1.5E-13 66.6 6.5 61 5-66 2-62 (81)
109 PF14834 GST_C_4: Glutathione 98.9 4.7E-08 1E-12 65.3 10.1 105 88-202 1-113 (117)
110 cd02066 GRX_family Glutaredoxi 98.9 1.4E-08 3.1E-13 63.3 7.1 69 5-74 1-70 (72)
111 cd03212 GST_C_Metaxin1_3 GST_C 98.9 1.1E-08 2.3E-13 72.7 7.1 73 120-193 61-134 (137)
112 cd03418 GRX_GRXb_1_3_like Glut 98.8 4E-08 8.7E-13 62.2 7.3 71 5-76 1-73 (75)
113 TIGR02196 GlrX_YruB Glutaredox 98.7 4.3E-08 9.4E-13 61.5 6.5 70 5-75 1-73 (74)
114 cd02976 NrdH NrdH-redoxin (Nrd 98.7 4.6E-08 1E-12 61.3 6.2 62 5-67 1-63 (73)
115 TIGR02181 GRX_bact Glutaredoxi 98.7 1.1E-07 2.4E-12 60.8 6.8 71 6-77 1-72 (79)
116 COG0695 GrxC Glutaredoxin and 98.7 2E-07 4.3E-12 59.7 7.6 69 5-74 2-73 (80)
117 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.1E-07 2.3E-12 59.8 5.8 57 6-63 1-57 (72)
118 TIGR02189 GlrX-like_plant Glut 98.6 5.9E-07 1.3E-11 60.0 8.8 70 4-74 8-81 (99)
119 TIGR02200 GlrX_actino Glutared 98.6 3.7E-07 8E-12 57.9 7.0 70 5-75 1-75 (77)
120 PF00462 Glutaredoxin: Glutare 98.5 1E-07 2.2E-12 57.6 3.8 59 6-65 1-60 (60)
121 PHA03050 glutaredoxin; Provisi 98.5 7.6E-07 1.6E-11 60.4 8.4 69 4-73 13-88 (108)
122 PRK11200 grxA glutaredoxin 1; 98.5 5.8E-07 1.2E-11 58.3 7.5 76 5-80 2-84 (85)
123 cd03419 GRX_GRXh_1_2_like Glut 98.5 8.2E-07 1.8E-11 57.1 8.1 72 5-77 1-76 (82)
124 TIGR02183 GRXA Glutaredoxin, G 98.5 1.2E-06 2.7E-11 56.9 7.6 75 6-80 2-83 (86)
125 TIGR00365 monothiol glutaredox 98.3 4.2E-06 9.2E-11 55.6 7.5 71 4-75 12-88 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.3 7.6E-06 1.6E-10 52.7 8.2 71 6-77 1-77 (84)
127 cd03028 GRX_PICOT_like Glutare 98.2 7.6E-06 1.6E-10 53.7 7.5 71 4-75 8-84 (90)
128 PF10568 Tom37: Outer mitochon 98.1 2.4E-05 5.2E-10 48.8 7.0 56 12-75 12-71 (72)
129 PRK12759 bifunctional gluaredo 98.0 3.4E-05 7.3E-10 64.7 8.0 70 3-73 1-79 (410)
130 cd03031 GRX_GRX_like Glutaredo 97.9 8.4E-05 1.8E-09 53.1 7.5 70 5-75 1-81 (147)
131 PRK10824 glutaredoxin-4; Provi 97.8 0.00013 2.9E-09 49.8 7.3 71 4-75 15-91 (115)
132 PF04399 Glutaredoxin2_C: Glut 97.7 0.00029 6.3E-09 49.3 7.5 68 121-197 57-124 (132)
133 KOG1147 Glutamyl-tRNA syntheta 97.7 4.1E-05 8.9E-10 64.3 3.8 112 55-189 38-150 (712)
134 KOG1752 Glutaredoxin and relat 97.6 0.00087 1.9E-08 44.9 8.6 71 4-75 14-88 (104)
135 cd03199 GST_C_GRX2 GST_C famil 97.4 0.001 2.3E-08 46.1 7.1 67 122-197 59-125 (128)
136 PTZ00062 glutaredoxin; Provisi 97.3 0.0012 2.7E-08 49.8 7.3 71 4-75 113-189 (204)
137 cd02973 TRX_GRX_like Thioredox 97.3 0.0012 2.7E-08 40.3 5.9 58 5-66 2-64 (67)
138 COG4545 Glutaredoxin-related p 97.1 0.0023 5E-08 39.4 5.5 61 5-66 3-77 (85)
139 cd03036 ArsC_like Arsenate Red 97.0 0.0015 3.2E-08 44.6 4.5 34 6-39 1-34 (111)
140 cd02977 ArsC_family Arsenate R 96.9 0.0024 5.2E-08 43.0 5.1 33 6-38 1-33 (105)
141 PRK01655 spxA transcriptional 96.9 0.0027 5.8E-08 44.6 5.1 33 6-38 2-34 (131)
142 cd03032 ArsC_Spx Arsenate Redu 96.7 0.0039 8.5E-08 42.7 5.2 32 6-37 2-33 (115)
143 PRK12559 transcriptional regul 96.5 0.0069 1.5E-07 42.5 5.3 33 6-38 2-34 (131)
144 PRK13344 spxA transcriptional 96.5 0.0076 1.7E-07 42.4 5.5 33 6-38 2-34 (132)
145 PF05768 DUF836: Glutaredoxin- 96.5 0.014 3.1E-07 37.2 6.4 55 5-62 1-57 (81)
146 cd03033 ArsC_15kD Arsenate Red 96.5 0.0079 1.7E-07 41.1 5.3 33 5-37 1-33 (113)
147 TIGR01617 arsC_related transcr 96.5 0.0043 9.3E-08 42.7 4.1 32 6-37 1-32 (117)
148 PRK10026 arsenate reductase; P 96.3 0.008 1.7E-07 42.6 4.5 34 4-37 2-35 (141)
149 cd03035 ArsC_Yffb Arsenate Red 96.2 0.012 2.6E-07 39.6 5.0 32 6-37 1-32 (105)
150 cd03030 GRX_SH3BGR Glutaredoxi 96.0 0.056 1.2E-06 35.4 7.2 67 6-73 2-79 (92)
151 COG0278 Glutaredoxin-related p 96.0 0.045 9.8E-07 35.9 6.3 72 4-76 15-93 (105)
152 TIGR00412 redox_disulf_2 small 95.9 0.044 9.6E-07 34.4 6.2 55 6-66 3-61 (76)
153 COG1393 ArsC Arsenate reductas 95.8 0.03 6.4E-07 38.5 5.4 33 5-37 2-34 (117)
154 TIGR01616 nitro_assoc nitrogen 95.4 0.052 1.1E-06 37.8 5.5 33 5-37 2-34 (126)
155 PRK10853 putative reductase; P 95.4 0.031 6.6E-07 38.5 4.2 32 6-37 2-33 (118)
156 TIGR00411 redox_disulf_1 small 95.2 0.098 2.1E-06 32.9 6.1 57 5-63 2-62 (82)
157 cd03034 ArsC_ArsC Arsenate Red 95.0 0.042 9.1E-07 37.4 4.0 32 6-37 1-32 (112)
158 TIGR00014 arsC arsenate reduct 94.8 0.047 1E-06 37.3 3.9 32 6-37 1-32 (114)
159 cd03026 AhpF_NTD_C TRX-GRX-lik 94.5 0.16 3.5E-06 33.0 5.7 58 5-66 15-77 (89)
160 PF04908 SH3BGR: SH3-binding, 94.4 0.24 5.2E-06 32.9 6.4 71 1-75 1-87 (99)
161 PF11287 DUF3088: Protein of u 94.4 0.14 3E-06 34.5 5.1 68 13-80 23-108 (112)
162 PHA02125 thioredoxin-like prot 94.4 0.22 4.8E-06 31.0 6.0 53 6-63 2-54 (75)
163 cd01659 TRX_superfamily Thiore 94.4 0.11 2.4E-06 30.0 4.5 54 6-60 1-59 (69)
164 PF11801 Tom37_C: Tom37 C-term 93.2 0.27 5.8E-06 36.1 5.4 38 127-164 112-153 (168)
165 PF13192 Thioredoxin_3: Thiore 91.5 0.77 1.7E-05 28.7 5.3 56 6-67 3-62 (76)
166 KOG0911 Glutaredoxin-related p 90.1 1.1 2.4E-05 34.2 5.7 72 4-76 139-216 (227)
167 PF03960 ArsC: ArsC family; I 88.4 0.64 1.4E-05 31.4 3.3 29 9-37 1-29 (110)
168 PF00085 Thioredoxin: Thioredo 81.1 12 0.00026 24.1 7.9 70 5-77 20-102 (103)
169 cd02949 TRX_NTR TRX domain, no 80.8 10 0.00023 24.5 6.4 59 5-65 16-80 (97)
170 KOG1668 Elongation factor 1 be 78.5 2.1 4.6E-05 32.8 2.7 59 129-198 10-68 (231)
171 TIGR01295 PedC_BrcD bacterioci 77.7 14 0.0003 25.4 6.4 32 6-37 27-62 (122)
172 PF09635 MetRS-N: MetRS-N bind 76.9 1.9 4.1E-05 29.6 1.8 27 54-80 35-63 (122)
173 TIGR03143 AhpF_homolog putativ 76.8 8.3 0.00018 34.1 6.3 57 5-66 479-541 (555)
174 cd02947 TRX_family TRX family; 76.1 16 0.00034 22.6 7.1 56 5-64 13-75 (93)
175 COG3019 Predicted metal-bindin 74.6 15 0.00032 26.0 5.7 74 5-79 27-104 (149)
176 PRK15317 alkyl hydroperoxide r 72.8 6.5 0.00014 34.4 4.6 72 5-78 119-197 (517)
177 cd02989 Phd_like_TxnDC9 Phosdu 72.5 24 0.00052 23.8 6.5 57 6-66 26-89 (113)
178 KOG2824 Glutaredoxin-related p 70.6 6.9 0.00015 30.9 3.8 70 4-74 131-211 (281)
179 TIGR03140 AhpF alkyl hydropero 70.1 7.2 0.00016 34.1 4.3 72 5-78 120-198 (515)
180 TIGR02187 GlrX_arch Glutaredox 68.2 23 0.0005 26.9 6.3 54 5-60 136-192 (215)
181 cd02953 DsbDgamma DsbD gamma f 67.4 18 0.0004 23.6 5.0 53 5-59 14-77 (104)
182 cd02984 TRX_PICOT TRX domain, 66.6 31 0.00066 22.0 6.7 58 6-65 18-81 (97)
183 cd02975 PfPDO_like_N Pyrococcu 65.5 23 0.0005 23.8 5.2 53 6-60 25-81 (113)
184 cd02963 TRX_DnaJ TRX domain, D 64.7 39 0.00085 22.5 6.4 59 5-65 27-92 (111)
185 PRK09381 trxA thioredoxin; Pro 62.7 41 0.00089 22.0 7.1 58 6-65 25-88 (109)
186 cd02951 SoxW SoxW family; SoxW 58.3 41 0.0009 22.8 5.6 17 5-21 17-33 (125)
187 PF01323 DSBA: DSBA-like thior 56.7 19 0.0004 26.5 3.9 36 5-40 1-41 (193)
188 TIGR02681 phage_pRha phage reg 54.0 16 0.00036 24.6 2.8 26 55-80 2-28 (108)
189 PF04134 DUF393: Protein of un 54.0 53 0.0011 21.9 5.5 68 8-78 1-77 (114)
190 cd03021 DsbA_GSTK DsbA family, 53.9 21 0.00046 26.9 3.8 36 4-39 1-40 (209)
191 PHA03075 glutaredoxin-like pro 53.5 26 0.00057 23.9 3.6 67 4-78 3-69 (123)
192 COG3118 Thioredoxin domain-con 53.4 1.2E+02 0.0026 24.6 8.0 75 4-80 45-131 (304)
193 PF09849 DUF2076: Uncharacteri 51.3 1.2E+02 0.0026 23.9 8.1 67 67-139 5-71 (247)
194 PF13728 TraF: F plasmid trans 49.8 61 0.0013 24.8 5.8 53 5-59 123-188 (215)
195 PTZ00051 thioredoxin; Provisio 48.3 69 0.0015 20.3 6.4 58 6-65 22-84 (98)
196 PRK10996 thioredoxin 2; Provis 47.3 96 0.0021 21.7 6.8 58 6-65 56-119 (139)
197 cd02962 TMX2 TMX2 family; comp 45.7 1.1E+02 0.0024 21.9 6.7 61 6-66 51-122 (152)
198 cd02959 ERp19 Endoplasmic reti 45.7 93 0.002 21.0 6.1 60 6-66 23-91 (117)
199 cd03003 PDI_a_ERdj5_N PDIa fam 45.6 81 0.0017 20.3 5.5 56 6-63 22-83 (101)
200 TIGR02187 GlrX_arch Glutaredox 44.4 91 0.002 23.6 6.0 58 5-64 22-89 (215)
201 cd02957 Phd_like Phosducin (Ph 43.8 88 0.0019 20.8 5.3 60 6-68 28-92 (113)
202 TIGR01068 thioredoxin thioredo 41.9 88 0.0019 19.7 8.3 57 6-64 18-80 (101)
203 PHA02278 thioredoxin-like prot 41.6 1E+02 0.0022 20.4 7.1 59 6-66 18-86 (103)
204 cd03020 DsbA_DsbC_DsbG DsbA fa 41.4 38 0.00083 25.2 3.5 22 5-26 80-101 (197)
205 PF13098 Thioredoxin_2: Thiore 40.9 35 0.00075 22.5 2.9 21 5-25 8-28 (112)
206 PF09413 DUF2007: Domain of un 40.6 33 0.00071 20.5 2.5 34 6-39 1-34 (67)
207 cd02993 PDI_a_APS_reductase PD 40.6 1.1E+02 0.0023 20.2 5.8 54 5-59 24-83 (109)
208 PF15608 PELOTA_1: PELOTA RNA 39.4 67 0.0014 21.4 3.9 32 4-35 56-87 (100)
209 cd02948 TRX_NDPK TRX domain, T 38.6 1.1E+02 0.0024 19.8 6.6 57 6-65 21-84 (102)
210 PF11417 Inhibitor_G39P: Loade 38.2 97 0.0021 19.1 4.5 36 67-104 5-42 (71)
211 PF06110 DUF953: Eukaryotic pr 37.9 20 0.00043 24.7 1.3 56 11-68 35-105 (119)
212 COG4365 Uncharacterized protei 37.8 1.7E+02 0.0037 25.0 6.7 64 147-220 204-267 (537)
213 PF12290 DUF3802: Protein of u 37.6 58 0.0013 22.0 3.4 39 118-159 59-97 (113)
214 cd02956 ybbN ybbN protein fami 37.6 1.1E+02 0.0023 19.4 6.5 57 6-65 16-79 (96)
215 PRK11657 dsbG disulfide isomer 36.9 52 0.0011 25.8 3.7 21 5-25 120-140 (251)
216 PF00731 AIRC: AIR carboxylase 36.0 66 0.0014 23.2 3.8 33 11-43 10-42 (150)
217 cd02972 DsbA_family DsbA famil 34.3 51 0.0011 20.5 2.9 22 6-27 1-22 (98)
218 cd04911 ACT_AKiii-YclM-BS_1 AC 33.7 63 0.0014 20.3 3.0 25 14-38 15-39 (76)
219 PF11823 DUF3343: Protein of u 33.0 1E+02 0.0023 18.7 3.9 32 6-37 3-34 (73)
220 KOG3425 Uncharacterized conser 33.0 69 0.0015 22.1 3.2 65 11-76 42-120 (128)
221 cd02997 PDI_a_PDIR PDIa family 32.4 1.3E+02 0.0029 19.0 6.5 58 5-64 20-87 (104)
222 cd02994 PDI_a_TMX PDIa family, 32.2 1.4E+02 0.003 19.1 5.6 52 5-59 19-76 (101)
223 PRK10877 protein disulfide iso 31.7 57 0.0012 25.3 3.1 22 5-26 110-131 (232)
224 cd02954 DIM1 Dim1 family; Dim1 30.2 1.8E+02 0.0039 19.8 5.7 59 6-66 18-82 (114)
225 PF10079 DUF2317: Uncharacteri 30.0 2.6E+02 0.0057 24.9 7.1 84 126-219 176-269 (542)
226 cd03004 PDI_a_ERdj5_C PDIa fam 29.9 1.1E+02 0.0024 19.6 4.0 52 5-59 22-78 (104)
227 PF04564 U-box: U-box domain; 29.9 1.4E+02 0.0029 18.3 4.6 24 55-79 16-39 (73)
228 cd02955 SSP411 TRX domain, SSP 29.1 1.9E+02 0.0042 19.8 6.4 60 6-68 19-97 (124)
229 TIGR01162 purE phosphoribosyla 28.2 68 0.0015 23.2 2.8 31 10-40 7-37 (156)
230 cd02996 PDI_a_ERp44 PDIa famil 28.0 1.5E+02 0.0033 19.2 4.4 56 6-63 22-89 (108)
231 PTZ00102 disulphide isomerase; 27.7 3.6E+02 0.0078 23.0 7.7 73 5-79 52-138 (477)
232 cd03022 DsbA_HCCA_Iso DsbA fam 27.4 82 0.0018 23.0 3.3 33 6-38 1-37 (192)
233 PRK15371 effector protein YopJ 27.2 2E+02 0.0044 23.2 5.4 65 123-192 23-87 (287)
234 cd02961 PDI_a_family Protein D 26.6 1.6E+02 0.0035 18.1 5.6 52 5-59 18-76 (101)
235 PF12486 DUF3702: ImpA domain 26.6 1.9E+02 0.0041 20.8 4.8 24 84-107 30-53 (148)
236 COG5515 Uncharacterized conser 26.1 69 0.0015 19.1 2.0 21 6-26 3-27 (70)
237 PF09868 DUF2095: Uncharacteri 24.3 50 0.0011 22.5 1.4 64 17-80 25-92 (128)
238 KOG0190 Protein disulfide isom 23.9 3.7E+02 0.008 23.7 6.8 73 6-80 46-133 (493)
239 TIGR01764 excise DNA binding d 23.8 1.3E+02 0.0028 15.9 3.3 24 53-76 25-48 (49)
240 KOG2501 Thioredoxin, nucleored 23.5 1.4E+02 0.0031 21.6 3.7 34 6-39 36-77 (157)
241 cd03005 PDI_a_ERp46 PDIa famil 23.4 2E+02 0.0044 18.1 6.5 58 5-64 19-85 (102)
242 cd02952 TRP14_like Human TRX-r 23.4 2.5E+02 0.0054 19.2 6.5 55 12-67 38-105 (119)
243 cd03000 PDI_a_TMX3 PDIa family 23.4 2.1E+02 0.0046 18.4 5.6 52 6-59 19-77 (104)
244 COG5494 Predicted thioredoxin/ 23.4 3E+02 0.0064 21.2 5.4 72 5-78 12-87 (265)
245 cd02987 Phd_like_Phd Phosducin 23.2 3.1E+02 0.0066 20.1 7.1 59 6-67 87-150 (175)
246 cd03025 DsbA_FrnE_like DsbA fa 23.2 1.5E+02 0.0033 21.6 4.1 33 5-37 2-40 (193)
247 cd06891 PX_Vps17p The phosphoi 23.0 61 0.0013 23.0 1.7 20 179-198 109-128 (140)
248 cd03006 PDI_a_EFP1_N PDIa fami 22.9 1.7E+02 0.0037 19.7 3.9 51 6-59 33-89 (113)
249 cd03024 DsbA_FrnE DsbA family, 22.9 94 0.002 22.9 2.9 33 6-38 1-41 (201)
250 COG0041 PurE Phosphoribosylcar 22.3 1.5E+02 0.0033 21.5 3.5 33 8-40 9-41 (162)
251 TIGR01130 ER_PDI_fam protein d 22.1 4.7E+02 0.01 22.0 7.4 73 5-80 21-110 (462)
252 cd02950 TxlA TRX-like protein 21.2 3E+02 0.0065 19.2 6.6 58 6-65 24-90 (142)
253 PRK13949 shikimate kinase; Pro 21.0 1.5E+02 0.0033 21.5 3.6 30 3-32 1-30 (169)
254 PF11732 Thoc2: Transcription- 20.6 1.5E+02 0.0032 18.7 2.9 42 143-192 35-76 (77)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-40 Score=245.61 Aligned_cols=216 Identities=50% Similarity=0.832 Sum_probs=191.8
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCC-CC
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWK-NN 82 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~-~~ 82 (223)
+.++||++..|||++|++++|+++||+|+.++.++.++++++++.||-+++||||+++|.+|+||..|++||++.++ ++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 45999999999999999999999999999999999999999999997679999999999999999999999999999 58
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhc-chhhHHHHHHHHHHHHHHHHHhcC-CCCccccCCCCHhHHHHHHH
Q 041800 83 PILPRDPHQRAVARFWAKFIDEKLLATGMKASLA-EGKEKELLNEEILEQMKLLENELN-GKDFFGGEAIGLVDIVATVV 160 (223)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~~~~~ 160 (223)
+++|.|+.+|+.++.|.++++..++......... .++..+.+.+++.+.|..||+.|+ +++|++|+++++.|+++++.
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~ 167 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPS 167 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhh
Confidence 8999999999999999999998776665555553 457788889999999999999998 78999999999999999976
Q ss_pred HhHhhhh-hhhcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHhhhc
Q 041800 161 AFWFPIS-HEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVRARMEGLN 219 (223)
Q Consensus 161 l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 219 (223)
+.+.... ....+...+..+++|+|.+|.+||.++++|++++++.+.+.++++..++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~~ 227 (231)
T KOG0406|consen 168 FERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGSP 227 (231)
T ss_pred HHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhcc
Confidence 6555433 3333345555789999999999999999999999999999999999988754
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=6.7e-39 Score=244.97 Aligned_cols=198 Identities=23% Similarity=0.382 Sum_probs=168.0
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCC
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNNP 83 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~~ 83 (223)
+.++||+++.||+|++|+++|+++|++|+.+.++..+++++|+++||. |+||+|+++|.+|+||.+|++||++++|+..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCC
Confidence 459999999999999999999999999999999988888999999998 9999999999999999999999999999878
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhH
Q 041800 84 ILPRDPHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFW 163 (223)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~ 163 (223)
++|.++.+++.++.|+.++...+...........++..+...+.+...+..+|++|++++|++|+++|+||+++++.+.+
T Consensus 88 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~ 167 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWR 167 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHH
Confidence 99999999999999998876655443322222233445566778889999999999989999999999999999998876
Q ss_pred hhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCChHHH
Q 041800 164 FPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKH 207 (223)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 207 (223)
+.. .+.++. .+.+|+|++|+++|.++|++++++...++.
T Consensus 168 ~~~----~~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~~~ 206 (211)
T PRK09481 168 LPV----LGIELS-GPGAKELKGYMTRVFERDSFLASLTEAERE 206 (211)
T ss_pred HHh----cCCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHHHH
Confidence 632 244441 257999999999999999999998865543
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=8.6e-36 Score=228.41 Aligned_cols=192 Identities=21% Similarity=0.336 Sum_probs=156.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNN 82 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~ 82 (223)
|+||+++.||++++|+++|+++||+|+.+.++.. +.+++++++||. |+||+|+++|.+|+||.+|++||++++++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 8999999999999999999999999999998865 467889999998 999999999999999999999999999743
Q ss_pred --CCCCCCHHHHHHHHHHHHHhhhhhhHHHH----Hhhhc-------chhhHHHHHHHHHHHHHHHHHhcCCCCccccCC
Q 041800 83 --PILPRDPHQRAVARFWAKFIDEKLLATGM----KASLA-------EGKEKELLNEEILEQMKLLENELNGKDFFGGEA 149 (223)
Q Consensus 83 --~l~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 149 (223)
+++|.++.+++.++.|+.+..+.+.+.+. ..++. +.+..+...+.+.+.++.||++|++++|++|++
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 161 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDE 161 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 58999999999999999888765543221 11111 112234456778889999999999889999999
Q ss_pred CCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCC
Q 041800 150 IGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRP 202 (223)
Q Consensus 150 ~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 202 (223)
+|+||+++++.+.+...... ...+ .+++|+|.+|+++|.++|++++++.
T Consensus 162 ~t~ADi~~~~~~~~~~~~~~--~~~~--~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 162 FTLADLTHMPGMRYIMNETS--LSGL--VTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred CCHHHHHHHHHHHHHHhccc--cHHH--HhcCHHHHHHHHHHhcChhhHHHHH
Confidence 99999999998876532111 1122 3789999999999999999998754
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=2.3e-35 Score=225.91 Aligned_cols=194 Identities=23% Similarity=0.288 Sum_probs=160.1
Q ss_pred CCCCcEEEEecC--CCcHHHHHHHHHHHcCCCceEEecCCCC---CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 041800 1 MAEEEVKLYGTW--VSPFSRRIELALKLKGVPFEYIGVDLSN---KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYI 75 (223)
Q Consensus 1 M~~~~~~Ly~~~--~s~~~~~v~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl 75 (223)
|+-++++||+++ .||+|++++++|+++||+|+.+.++..+ ..++|+++||. |+||+|++||.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 666789999976 7999999999999999999999998753 56899999998 99999999999999999999999
Q ss_pred HhhCCCCC---CCCCCHHHHHHHHHHHHHhhhhhhHHHHHh----hhc---chhhHHHHHHHHHHHHHHHHHhcCC-CCc
Q 041800 76 DDTWKNNP---ILPRDPHQRAVARFWAKFIDEKLLATGMKA----SLA---EGKEKELLNEEILEQMKLLENELNG-KDF 144 (223)
Q Consensus 76 ~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~---~~~~~~~~~~~~~~~l~~le~~L~~-~~~ 144 (223)
+++++++. ++|.++.+++.++.|+.+..+.+.+..... ++. .+...+...+++.+.+..+|++|++ ++|
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99998765 999999999999999999876665432211 111 2223455677889999999999975 579
Q ss_pred cccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCChH
Q 041800 145 FGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPRE 205 (223)
Q Consensus 145 l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 205 (223)
++|+ +|+||+++++.+.++.. .+..+ .|+|.+|++|+.++|+|++++++.+
T Consensus 160 l~G~-~TlADi~l~~~l~~~~~----~~~~~-----~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 160 LFGE-WCIADTDLALMLNRLVL----HGDEV-----PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred eeCC-ccHHHHHHHHHHHHHHH----cCCCC-----CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 9996 99999999999877632 23332 2999999999999999999877654
No 5
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.7e-34 Score=221.41 Aligned_cols=192 Identities=20% Similarity=0.334 Sum_probs=155.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCC-
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKN- 81 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~- 81 (223)
++||+.+.| +++|++++|+++|++|+.+.++.. +.+++|+++||. |+||+|+++|.+|+||.+|++||++++++
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 899997665 699999999999999999998874 457899999998 99999999999999999999999999874
Q ss_pred -CCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhh----h-------cchhhHHHHHHHHHHHHHHHHHhcCCCCccccCC
Q 041800 82 -NPILPRDPHQRAVARFWAKFIDEKLLATGMKAS----L-------AEGKEKELLNEEILEQMKLLENELNGKDFFGGEA 149 (223)
Q Consensus 82 -~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 149 (223)
+.++|.++.+++.++.|+.+....+.+.+.... + .+.+..+...+.+.+.++.||++|++++|++|++
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 160 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDF 160 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 359999999999999999988766554433221 1 1122234567778899999999999889999999
Q ss_pred CCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCC
Q 041800 150 IGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPP 203 (223)
Q Consensus 150 ~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 203 (223)
+|+||+++++.+.+... ....... .+.+|+|.+|++++.++|++++++..
T Consensus 161 ~s~ADi~l~~~~~~~~~--~~~~~~~--~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 161 VSLADLAHLPFTEYLVG--PIGKAYL--IKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCHHHHHHHHHHHHHhc--ccchhhh--hccCchHHHHHHHHHcChHHHHHHHH
Confidence 99999999998776521 1101112 36799999999999999999987654
No 6
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=1.3e-34 Score=219.87 Aligned_cols=189 Identities=18% Similarity=0.339 Sum_probs=156.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC----CChhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN----KSPELLKYNPIHKKIPVLV-HNGKSIVESLIILEYIDDTWK 80 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~----~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yl~~~~~ 80 (223)
|+||+++.| ++++++++|+++||+|+.+.+++.. ..++|+++||. |+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998866 7999999999999999999998752 45789999998 9999998 588999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcc--hhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHH
Q 041800 81 NNPIL-PRDPHQRAVARFWAKFIDEKLLATGMKASLAE--GKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVA 157 (223)
Q Consensus 81 ~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~ 157 (223)
++.++ |.++.+++.++.|+.+..+.+.+.+...+... +.......+.+.+.++.||++|++++|++|+++|+||+++
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l 158 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYL 158 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHH
Confidence 77665 66788999999999988777766544433321 2222445677889999999999988999999999999999
Q ss_pred HHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCC
Q 041800 158 TVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPP 203 (223)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 203 (223)
++++.+... .+..+ +.+|+|.+|++++.++|++++++.+
T Consensus 159 ~~~~~~~~~----~~~~~---~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 159 FTVLRWAYA----VKLNL---EGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHhhc----cCCCc---ccchHHHHHHHHHHcCHHHHHHHHH
Confidence 998877632 24443 6899999999999999999987654
No 7
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=2e-34 Score=220.90 Aligned_cols=187 Identities=22% Similarity=0.331 Sum_probs=151.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC---CChhhhhcCCCCCcccEEEe-----CC--eeeeehHHHHHHH
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN---KSPELLKYNPIHKKIPVLVH-----NG--KSIVESLIILEYI 75 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~-----~g--~~l~es~~I~~yl 75 (223)
++||+.+ +++|++|+++|+++||+|+.+.+++.. ..++|+++||. |+||+|++ +| .+|+||.+|++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999887 789999999999999999999998753 46889999998 99999996 45 4799999999999
Q ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhh-h-c-----chhhHHHHHHHHHHHHHHHHHhcCCCCccccC
Q 041800 76 DDTWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMKAS-L-A-----EGKEKELLNEEILEQMKLLENELNGKDFFGGE 148 (223)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 148 (223)
+++++ .+.|.++.+++.++.|+.|..+.+.+.+.... + . .+...+.....+.+.+..||++|++++|++|+
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 157 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGE 157 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence 99985 36788899999999999998776665432211 1 0 12334455677888999999999988999999
Q ss_pred CCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCC
Q 041800 149 AIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPP 203 (223)
Q Consensus 149 ~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 203 (223)
++|+|||++++.+.... .. +..+ +.+|+|.+|+++|.++|++++++..
T Consensus 158 ~~t~ADi~l~~~~~~~~---~~-~~~~---~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 158 NYSIADIACWPWVNAWT---RQ-RIDL---AMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred CCCHHHHHHHHHHHHHh---hc-CCcc---hhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999988764432 11 3333 7899999999999999999886543
No 8
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=6.6e-34 Score=217.35 Aligned_cols=190 Identities=29% Similarity=0.499 Sum_probs=156.1
Q ss_pred EEEecCCCcHHHHHHHHHHHcCCCceEEecCCC----CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 041800 7 KLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS----NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNN 82 (223)
Q Consensus 7 ~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~----~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~ 82 (223)
+||++..||+++++|++|+++||+|+.+.++.. ...++++++||. |+||+|+++|.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998862 246789999998 999999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhHH----HHHhhhc----chh-hHHHHHHHHHHHHHHHHHhcCC--CCccccCCCC
Q 041800 83 PILPRDPHQRAVARFWAKFIDEKLLAT----GMKASLA----EGK-EKELLNEEILEQMKLLENELNG--KDFFGGEAIG 151 (223)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~----~~~-~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t 151 (223)
.++|.++.+++.++.|..++.+.+.+. +...+.. .++ ..+...+.+.+.|+.||++|++ ++|++|+++|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 799999999999999998886555432 1111111 112 2233456688999999999975 4699999999
Q ss_pred HhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCCh
Q 041800 152 LVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPR 204 (223)
Q Consensus 152 ~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 204 (223)
+||+++++.+.+... . +..+ +.+|+|++|+++|.++|++++++.+.
T Consensus 160 ~ADi~~~~~l~~~~~---~-~~~~---~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 160 LADLCLVPQVYNAER---F-GVDL---TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred HHHHHHHHHHHHHHH---c-CCCc---ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 999999999887631 1 3333 78999999999999999999988754
No 9
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=3.9e-33 Score=213.90 Aligned_cols=197 Identities=19% Similarity=0.286 Sum_probs=158.0
Q ss_pred cCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCC---CCCCCC
Q 041800 11 TWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKN---NPILPR 87 (223)
Q Consensus 11 ~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~---~~l~~~ 87 (223)
...||+|++++++|.++||+|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||++.++. +.+.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 46899999999999999999999999998888999999998 99999999999999999999999999864 446666
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHhhhc-chhhHHHHHHHHHHHHHHHHHhcC------------------CCCccccC
Q 041800 88 DPHQRAVARFWAKFIDEKLLATGMKASLA-EGKEKELLNEEILEQMKLLENELN------------------GKDFFGGE 148 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~------------------~~~~l~G~ 148 (223)
++..++... .++..+...+.. .+...+...+++.+.+..||++|+ +++|+.|+
T Consensus 95 ~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd 166 (236)
T TIGR00862 95 HPESNTAGL--------DIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGD 166 (236)
T ss_pred CHHHHHHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCC
Confidence 665544321 122222222222 222334455668899999999996 57999999
Q ss_pred CCCHhHHHHHHHHhHhhhh-hhhcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHhhh
Q 041800 149 AIGLVDIVATVVAFWFPIS-HEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVRARMEGL 218 (223)
Q Consensus 149 ~~t~aD~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 218 (223)
++|+|||++++.+.++... ....++++ .+++|+|.+|++++.++|+|+++++..+.+...+....+++
T Consensus 167 ~~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~~~ 235 (236)
T TIGR00862 167 ELTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAKRL 235 (236)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhhcC
Confidence 9999999999999888643 22346665 58999999999999999999999999999999988775443
No 10
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-34 Score=216.57 Aligned_cols=185 Identities=32% Similarity=0.567 Sum_probs=159.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC--CCChhhhhcCCCCCcccEEEeCCe-eeeehHHHHHHHHhhCCCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS--NKSPELLKYNPIHKKIPVLVHNGK-SIVESLIILEYIDDTWKNN 82 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~~g~-~l~es~~I~~yl~~~~~~~ 82 (223)
++||+++.||+|+++++++.++|++|+.+.|+.. ...++|+.+||. |+||+|++++. +|+||.+|++||++++|++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 5899999999999999999999999999999987 478999999998 99999997664 8999999999999999877
Q ss_pred CCCCCCHH---HHHHHHHHHHHhhhhhhHHHHHhhhc--------chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCC
Q 041800 83 PILPRDPH---QRAVARFWAKFIDEKLLATGMKASLA--------EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIG 151 (223)
Q Consensus 83 ~l~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 151 (223)
.++|.++. +++.+..|..+....+.+.+...... .....+...+.+...+..+|..|++++|++|+++|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 159 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFT 159 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCC
Confidence 79998774 78888899998887777776654433 24455677888999999999999999999999999
Q ss_pred HhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhh
Q 041800 152 LVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVN 198 (223)
Q Consensus 152 ~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 198 (223)
+||+++++.+.++... +..+ +.+|+|.+|++|+.++|+++
T Consensus 160 iAD~~~~~~~~~~~~~----~~~~---~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 160 IADIALAPLLWRLALL----GEEL---ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHHhhhc----Cccc---ccChHHHHHHHHHHcCCchh
Confidence 9999999988886322 3333 67999999999999999965
No 11
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=2.9e-33 Score=212.54 Aligned_cols=192 Identities=27% Similarity=0.386 Sum_probs=156.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCCCCCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV-HNGKSIVESLIILEYIDDTWKNNPI 84 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yl~~~~~~~~l 84 (223)
++||+++.||++++|+++|+++|++|+.+.++.....+++.++||. |+||+|+ ++|.+|+||.+|++||+++++++.+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999988876666788889998 9999998 6789999999999999999887779
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHhhh---c----chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHH
Q 041800 85 LPRDPHQRAVARFWAKFIDEKLLATGMKASL---A----EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVA 157 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~ 157 (223)
+|.++.+++.++.|..+..+.+......... . ..+..+...+.+.+.|+.||++|++++ ++|+++|+||+++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l 158 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAI 158 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHH
Confidence 9999999999999988776644433221111 1 122224456788899999999998777 9999999999999
Q ss_pred HHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCC
Q 041800 158 TVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPP 203 (223)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 203 (223)
++.+.+..... . +..+ ...+|+|.+|++++.+||+|+++.+.
T Consensus 159 ~~~l~~~~~~~-~-~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 159 ACAVGYLNFRR-V-APGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHhcc-c-Ccch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 99888763211 1 2222 26799999999999999999998765
No 12
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=199.29 Aligned_cols=196 Identities=28% Similarity=0.499 Sum_probs=165.7
Q ss_pred CCCCcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC----CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 1 MAEEEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN----KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 1 M~~~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~----~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
|.+.+.+||++-.|.++.|||++|+.+||+|+.+.|++.. ...+|+++||. ++||+|++||.+++||.||+.||+
T Consensus 1 ~~~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 1 SSAAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred CCcccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHH
Confidence 3446899999999999999999999999999999998752 45689999998 999999999999999999999999
Q ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhh---cchhh---HHHHHHHHHHHHHHHHHhcCC--CCccccC
Q 041800 77 DTWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMKASL---AEGKE---KELLNEEILEQMKLLENELNG--KDFFGGE 148 (223)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~---~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 148 (223)
+.+|+++|+|.|+..|+.++.+...+.+.+.|.-..... ..++. ..=+..-+.+.+..||+.|.. +.|-+|+
T Consensus 80 Et~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGD 159 (217)
T KOG0868|consen 80 ETYPDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGD 159 (217)
T ss_pred hcCCCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCc
Confidence 999999999999999999999999988877765333222 11111 222345577889999999954 7899999
Q ss_pred CCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCCh
Q 041800 149 AIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPR 204 (223)
Q Consensus 149 ~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 204 (223)
++|+||+++.+.+...+. ...++ ..||.+.+..+.+...|.|+...++.
T Consensus 160 evtiADl~L~pqv~nA~r----f~vdl---~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 160 EVTIADLCLPPQVYNANR----FHVDL---TPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred eeehhhhccchhhhhhhh----ccccC---CcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 999999999998887632 25666 89999999999999999999988764
No 13
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=3.3e-32 Score=214.08 Aligned_cols=196 Identities=18% Similarity=0.277 Sum_probs=152.6
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHc------CCCceEEecCCC---CCChhhhhcCCCCCcccEEEeC----CeeeeehHH
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLK------GVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHN----GKSIVESLI 70 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~------~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~----g~~l~es~~ 70 (223)
..++||+.+ ||+|++|+++|+++ |++|+.+.+++. +..++|+++||. |+||+|+++ |.+|+||.+
T Consensus 43 ~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 43 HPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHH
Confidence 469999975 99999999999997 899999998874 356899999998 999999974 368999999
Q ss_pred HHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHH---hhh---cc--hhhHHHHHHHHHHHHHHHHHhcCCC
Q 041800 71 ILEYIDDTWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMK---ASL---AE--GKEKELLNEEILEQMKLLENELNGK 142 (223)
Q Consensus 71 I~~yl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~---~~--~~~~~~~~~~~~~~l~~le~~L~~~ 142 (223)
|++||+++++. ++|.++.+++.++.|+.+..+.+ +.... .++ .. ....+....++.+.|+.||++|+++
T Consensus 121 Il~YL~~~~~~--L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~ 197 (264)
T PRK11752 121 ILLYLAEKFGA--FLPKDLAARTETLNWLFWQQGSA-PFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH 197 (264)
T ss_pred HHHHHHHhcCC--cCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999863 89999999999999998876543 21111 111 11 1123445567888999999999988
Q ss_pred CccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCCh
Q 041800 143 DFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPR 204 (223)
Q Consensus 143 ~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 204 (223)
+||+|+++|+|||++++.+.++...........++.+.+|+|.+|+++|.++|++++++..+
T Consensus 198 ~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 198 EYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 99999999999999998876653211010111112378999999999999999999987654
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=1.6e-31 Score=204.33 Aligned_cols=188 Identities=21% Similarity=0.321 Sum_probs=145.2
Q ss_pred ecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCCCCCCH
Q 041800 10 GTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNNPILPRDP 89 (223)
Q Consensus 10 ~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~~l~~~~~ 89 (223)
.+..||||++|+++|+++|++|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||++++++..+. ++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~--~~ 92 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK--TP 92 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--CH
Confidence 345699999999999999999999999998888899999998 999999999999999999999999999865553 55
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcC--CCCccccCCCCHhHHHHHHHHhHhhhh
Q 041800 90 HQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELN--GKDFFGGEAIGLVDIVATVVAFWFPIS 167 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~~~~l~~~~~~ 167 (223)
.+++.++..+ +..+...+.. ....+...+.+.+.|..+|++|+ +++|++|+++|+||+++++.+.++...
T Consensus 93 ~~~a~i~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~ 164 (213)
T PLN02378 93 AEFASVGSNI-------FGTFGTFLKS-KDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVA 164 (213)
T ss_pred HHHHHHHHHH-------HHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHH
Confidence 6666554322 2222211111 12223445677788999999997 478999999999999999998776422
Q ss_pred -hhhcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHH
Q 041800 168 -HEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAH 210 (223)
Q Consensus 168 -~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 210 (223)
....+... .+.+|+|.+|+++|.++|++++++......+..
T Consensus 165 ~~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~~ 206 (213)
T PLN02378 165 LGHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYVISG 206 (213)
T ss_pred HHHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHHHHHH
Confidence 11122233 378999999999999999999998877655443
No 15
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=9.4e-32 Score=204.56 Aligned_cols=191 Identities=19% Similarity=0.229 Sum_probs=142.2
Q ss_pred CCCCcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhh--------hcCCCCCcccEEEeCCeeeeehHHHH
Q 041800 1 MAEEEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELL--------KYNPIHKKIPVLVHNGKSIVESLIIL 72 (223)
Q Consensus 1 M~~~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~L~~~g~~l~es~~I~ 72 (223)
|+ +.++||+++.+++++++|++|+++|++|+.+.++. .. +++. ++||. |+||+|++||.+|+||.+|+
T Consensus 1 m~-~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 1 MA-EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred CC-CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHH
Confidence 66 66999999999999999999999999999987743 22 2332 47998 99999999999999999999
Q ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCC--CCccccCCC
Q 041800 73 EYIDDTWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNG--KDFFGGEAI 150 (223)
Q Consensus 73 ~yl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~ 150 (223)
+||+++++ +.+.+..+++.++.+..... .+...+.......+...+...+.+.+.+..||++|++ ++|++|+++
T Consensus 77 ~YLa~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~ 152 (205)
T PTZ00057 77 RYLSKKYK---ICGESELNEFYADMIFCGVQ-DIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNL 152 (205)
T ss_pred HHHHHHcC---CCCCCHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcc
Confidence 99999997 44555444444443332221 2222211111111222344567788999999999964 389999999
Q ss_pred CHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCChH
Q 041800 151 GLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPRE 205 (223)
Q Consensus 151 t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 205 (223)
|+||+++++.+.++.. ..+..+ +++|+|.+|++|+.++|++++++.++.
T Consensus 153 T~AD~~l~~~~~~~~~---~~~~~l---~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 153 TYADLAVFNLYDDIET---KYPNSL---KNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred cHHHHHHHHHHHHHHH---hChhhh---ccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 9999999998877632 113344 789999999999999999999987654
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.98 E-value=8.2e-31 Score=205.26 Aligned_cols=190 Identities=20% Similarity=0.321 Sum_probs=148.4
Q ss_pred cCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCCCCCCHH
Q 041800 11 TWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNNPILPRDPH 90 (223)
Q Consensus 11 ~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~~l~~~~~~ 90 (223)
...||+|++++++|+++|++|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||++++|++.+. ++.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~ 146 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPP 146 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHH
Confidence 34599999999999999999999999998889999999998 999999998999999999999999999876664 566
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCC-CCccccCCCCHhHHHHHHHHhHhhhhhh
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNG-KDFFGGEAIGLVDIVATVVAFWFPISHE 169 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~~l~~~~~~~~ 169 (223)
+++.++.++. ..+...+.. ....+...+.+.+.+..||++|++ ++|++|+++|+||+++++.+.++.....
T Consensus 147 era~i~~~l~-------~~~~~~~~~-~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~ 218 (265)
T PLN02817 147 EKASVGSKIF-------STFIGFLKS-KDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALG 218 (265)
T ss_pred HHHHHHHHHH-------HHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7777665432 111111111 111222345677889999999974 7999999999999999999877643211
Q ss_pred -hcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHHH
Q 041800 170 -VLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVRA 213 (223)
Q Consensus 170 -~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 213 (223)
..+.++ .+.+|+|.+|++++.++|+|++++...+.+......
T Consensus 219 ~~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~~ 261 (265)
T PLN02817 219 HYKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRP 261 (265)
T ss_pred HhcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhHh
Confidence 123333 378999999999999999999999987776655543
No 17
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=2e-30 Score=198.08 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=137.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCCCCCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV-HNGKSIVESLIILEYIDDTWKNNPI 84 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yl~~~~~~~~l 84 (223)
|+||+++.||+|++++++|+++||+|+.+.++..... .-.++||. |+||+|+ ++|.+|+||.+|++||++++|++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 6899999999999999999999999999988654322 23678998 8999995 7899999999999999999986544
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcc-------h---------------------hhHHHHHHHHHHHHHHHH
Q 041800 85 LPRDPHQRAVARFWAKFIDEKLLATGMKASLAE-------G---------------------KEKELLNEEILEQMKLLE 136 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~---------------------~~~~~~~~~~~~~l~~le 136 (223)
.+ ..++.++.|+.+....+...+...+... . ...+...+.+.+.|+.+|
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 155 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALD 155 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 2567788888776554433322111100 0 011345678889999999
Q ss_pred HhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhh
Q 041800 137 NELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVN 198 (223)
Q Consensus 137 ~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 198 (223)
++|++ +|++|+++|+||+++++.+.++... .+. +.+|+|.+|++||.++|.+.
T Consensus 156 ~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~---~~~-----~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 156 PLIVK-PNAVNGELSTDDIHLFPILRNLTLV---KGI-----EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHhcC-ccccCCCCCHHHHHHHHHHhcceee---cCC-----CCCHHHHHHHHHHHHHhCCC
Confidence 99987 9999999999999999999887421 122 34699999999999998763
No 18
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-30 Score=197.05 Aligned_cols=196 Identities=27% Similarity=0.421 Sum_probs=165.7
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCC-
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWK- 80 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~- 80 (223)
.++||+++.|+.|+++.+++.+.|++|+.+.++.. +.+++|+++||. |+||+|+++|..+.||.+|+.||.+++.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 38999999999999999999999999999977654 689999999999 8999999999999999999999999886
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHhhhhhhHHH--HHhhhc-------chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCC
Q 041800 81 NNP-ILPRDPHQRAVARFWAKFIDEKLLATG--MKASLA-------EGKEKELLNEEILEQMKLLENELNGKDFFGGEAI 150 (223)
Q Consensus 81 ~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 150 (223)
... ++|.+...++.+++|+.+..+.+.+.. ...+.+ +........+.+...++.+|..|.++.|+.|+++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 334 999999999999999999888877763 222221 5556677889999999999999999999999999
Q ss_pred CHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCChH
Q 041800 151 GLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPRE 205 (223)
Q Consensus 151 t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 205 (223)
|+||+.+++.+..+.. ....... ..++|++.+|++++.++|++++......
T Consensus 161 tlADl~~~~~~~~~~~--~~~~~~~--~~~~p~v~~W~~~~~~~P~~~e~~~~~~ 211 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG--KFATEKD--FEKYPKVARWYERIQKRPAYEEANEKGA 211 (226)
T ss_pred cHHHHHHhhHHHHHhH--hhhhhhh--hhhChHHHHHHHHHHhCccHHHHHHHHH
Confidence 9999999998877631 1111222 4899999999999999999877655433
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=3.3e-28 Score=185.45 Aligned_cols=176 Identities=19% Similarity=0.278 Sum_probs=130.9
Q ss_pred EEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCCCCCCC
Q 041800 7 KLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV-HNGKSIVESLIILEYIDDTWKNNPIL 85 (223)
Q Consensus 7 ~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yl~~~~~~~~l~ 85 (223)
+||++..||+|++||++|.++|++|+.+.+...+ .....+.||. |+||+|+ +||.+++||.+|++||++++|.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~-~~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD-EETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc-chhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 6899999999999999999999999998775443 2234788998 8999998 88999999999999999999764343
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhHHHHHhhh-----------------cchhh-----------HHHHHHHHHHHHHHHHH
Q 041800 86 PRDPHQRAVARFWAKFIDEKLLATGMKASL-----------------AEGKE-----------KELLNEEILEQMKLLEN 137 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~~~-----------~~~~~~~~~~~l~~le~ 137 (223)
+. .++.++.|+.++...+...+...+. ..++. .+...+.+++.|+.+|+
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~ 155 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDK 155 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 3455666666544433222211110 00000 13456778999999999
Q ss_pred hcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccch-HHHHHHHHHhhchhh
Q 041800 138 ELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFP-VLLKWIGKLQEIDVV 197 (223)
Q Consensus 138 ~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 197 (223)
+|++++|++| ++|+||+++++.+.++.. ..+. .+| +|.+|++||.+++.+
T Consensus 156 ~L~~~~~l~g-~~TiADi~l~~~l~~~~~---~~~~------~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 156 LIDGPNAVNG-ELSEDDILVFPLLRNLTL---VAGI------NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHhCccccCC-CCCHHHHHHHHHhcCeee---ecCC------CCChHHHHHHHHHHHHhCC
Confidence 9999999955 699999999999987732 1121 245 999999999998875
No 20
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-27 Score=176.60 Aligned_cols=194 Identities=20% Similarity=0.242 Sum_probs=157.1
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 041800 3 EEEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNN 82 (223)
Q Consensus 3 ~~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~ 82 (223)
|+.++|++++..+++..+|++++.+|++|+...+...+..+..+...|+ |++|+|..||..|.+|.||++||+++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g-- 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG-- 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC--
Confidence 3479999999999999999999999999999999887644445566898 9999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhc-----chhhHH-HHHHHHHHHHHHHHHhcC--CCCccccCCCCHhH
Q 041800 83 PILPRDPHQRAVARFWAKFIDEKLLATGMKASLA-----EGKEKE-LLNEEILEQMKLLENELN--GKDFFGGEAIGLVD 154 (223)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~-~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD 154 (223)
+.|+++.+.+.++.+.+-..+.....+...+.. ..+..+ .........+..+++.|. +++||+|+++|+||
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aD 156 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWAD 156 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHH
Confidence 999999999999999887776443323333221 111111 455677788999999997 46799999999999
Q ss_pred HHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCChH
Q 041800 155 IVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPRE 205 (223)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 205 (223)
+.++..+..+... ..... .+.+|+|+++.+++.++|.+++++.++.
T Consensus 157 l~i~e~l~~l~~~---~~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 157 LVIAEHLDTLEEL---LDPSA--LDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred HHHHHHHHHHHHh---cCchh--hccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 9999988877431 12332 3788999999999999999999887754
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.94 E-value=6.4e-26 Score=169.35 Aligned_cols=205 Identities=17% Similarity=0.214 Sum_probs=150.2
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC-C
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTW-K 80 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~-~ 80 (223)
.++||.++.|.-+|+||++++++||+|+...|++. +..+||..+||. |.||||+++..+|.|+.-|++|+++.| +
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 48999999999999999999999999999999875 578999999998 999999999999999999999999998 4
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHh---------hhh-hh---------HHHH---Hhhh-----------c----------
Q 041800 81 NNPILPR-DPHQRAVARFWAKFI---------DEK-LL---------ATGM---KASL-----------A---------- 116 (223)
Q Consensus 81 ~~~l~~~-~~~~~~~~~~~~~~~---------~~~-l~---------~~~~---~~~~-----------~---------- 116 (223)
+..|.|. +..+..++..+.... .+. ++ |... .... .
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 4457773 222222221111110 000 00 1111 0000 0
Q ss_pred --------------chhhHHHHHHHHHHHHHHHHHhcCC----CCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCc
Q 041800 117 --------------EGKEKELLNEEILEQMKLLENELNG----KDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQ 178 (223)
Q Consensus 117 --------------~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~ 178 (223)
+.....+..+.+...|+..|+.|.+ ..||+|+.+|+||+.+.+.|+++..++.. . ..+..
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e-~-~yw~~ 262 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLE-K-KYWED 262 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccH-H-Hhccc
Confidence 1112234456677778888888866 68999999999999999999998654332 1 22234
Q ss_pred ccchHHHHHHHHHhhchhhhccCCChHHHHHHHH
Q 041800 179 EKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVR 212 (223)
Q Consensus 179 ~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 212 (223)
...|+|..|++|+++|++|++++.+.-.+.-++.
T Consensus 263 gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr~~~ 296 (325)
T KOG4420|consen 263 GSRPNLESYFERVRRRFSFRKVLGDIFNILRFRL 296 (325)
T ss_pred CCCccHHHHHHHHHhhhHHHHhhhhHHHHHHHHH
Confidence 6899999999999999999999998877666443
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.3e-22 Score=146.33 Aligned_cols=194 Identities=20% Similarity=0.315 Sum_probs=154.8
Q ss_pred CCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCCCCCCHHHH
Q 041800 13 VSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNNPILPRDPHQR 92 (223)
Q Consensus 13 ~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~~l~~~~~~~~ 92 (223)
.||+||++.+.|.++|++|..+.|++..+++||+++.|. |++|+|..|+..++||..|.++|++.+|.+++--.++.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~ 98 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPES 98 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHHH
Confidence 699999999999999999999999999999999999997 8999999999999999999999999998654422222222
Q ss_pred HHHHHHHHHhhhhhhHHHHHhhhcchh-hHHHHHHHHHHHHHHHHHhcCC---CCccccCCCCHhHHHHHHHHhHhhhhh
Q 041800 93 AVARFWAKFIDEKLLATGMKASLAEGK-EKELLNEEILEQMKLLENELNG---KDFFGGEAIGLVDIVATVVAFWFPISH 168 (223)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~~~~~l~~~~~~~ 168 (223)
+- +...++..+......+.+ ..+.....+...|..|+.+|+. ++|+.|+++|.||+.+.+=|+.+....
T Consensus 99 as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~ 171 (221)
T KOG1422|consen 99 AS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAA 171 (221)
T ss_pred Hh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHH
Confidence 21 112233333333333333 3344456677788999999974 899999999999999999998887543
Q ss_pred h-hcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHh
Q 041800 169 E-VLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVRARME 216 (223)
Q Consensus 169 ~-~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 216 (223)
. ..++++ .+.++++.+|+..+.++.+|..+++...++...+.....
T Consensus 172 k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~~~ 218 (221)
T KOG1422|consen 172 KHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPVAK 218 (221)
T ss_pred HHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhhhh
Confidence 3 346666 689999999999999999999999999998888876543
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.90 E-value=5.7e-23 Score=179.27 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=129.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCCCCCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV-HNGKSIVESLIILEYIDDTWKNNPI 84 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yl~~~~~~~~l 84 (223)
++||+.+.|+ +.++.++|++.|++|+.+. .+|. |+||+|+ ++|.+|+||.+|++||++.++...|
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L 68 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSASLPGF 68 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCCCcCC
Confidence 8999999885 7789999999999999865 1577 8999999 4889999999999999999987789
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHh
Q 041800 85 LPRDPHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWF 164 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~ 164 (223)
+|.++.+++.++.|+.++.... . ...+...++.||.+|++++||+|+++|+||+++++.+...
T Consensus 69 ~p~d~~erAqV~qWL~~~~~~~-~----------------~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~ 131 (722)
T PLN02907 69 YGQDAFESSQVDEWLDYAPTFS-S----------------GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGS 131 (722)
T ss_pred CCCCHHHHHHHHHHHHHHhhcc-c----------------HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999875421 1 1245678899999999999999999999999999987554
Q ss_pred hhhhhhcCccccCcccchHHHHHHHHHhhchh
Q 041800 165 PISHEVLGVEVITQEKFPVLLKWIGKLQEIDV 196 (223)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 196 (223)
.. ...+... .+.+|+|.+|+++|.++|+
T Consensus 132 ~~--~~~~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 132 GQ--RWESLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred hh--hhhcccc--cccCHHHHHHHHHHHhCCC
Confidence 11 1112222 3789999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.84 E-value=1.2e-20 Score=120.38 Aligned_cols=74 Identities=43% Similarity=0.809 Sum_probs=70.8
Q ss_pred EEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 041800 8 LYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNN 82 (223)
Q Consensus 8 Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~ 82 (223)
||+++.||||+|+|++|+++||+|+.+.++..+..+++.+.||. |+||+|++||.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999988778999999998 999999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.81 E-value=2.3e-19 Score=113.94 Aligned_cols=73 Identities=36% Similarity=0.580 Sum_probs=69.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTW 79 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~ 79 (223)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||. |++|+|+++|..+.||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988778899999998 899999999999999999999999864
No 26
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.80 E-value=1.9e-19 Score=113.96 Aligned_cols=70 Identities=29% Similarity=0.510 Sum_probs=64.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
++||+++.|++|++++++|+++|++|+.+.+++. .+.++|.++||. |+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998864 457889999998 999999999999999999999985
No 27
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=4.9e-19 Score=112.68 Aligned_cols=74 Identities=66% Similarity=1.143 Sum_probs=68.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTW 79 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~ 79 (223)
|+||+++.||+|+++|++|+++|++|+.+.++...+.++++++||..|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 58999999999999999999999999999988877788999999932799999999999999999999998764
No 28
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.79 E-value=4e-18 Score=128.54 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=127.4
Q ss_pred cEEEEecC-------CCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 041800 5 EVKLYGTW-------VSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDD 77 (223)
Q Consensus 5 ~~~Ly~~~-------~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~ 77 (223)
.+-||.++ .||||.++..+|...+||||.+...+. ..+.. |++|.++-||..+.||..|...|.+
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~ 116 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLRK 116 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHHH
Confidence 46677654 899999999999999999998876652 23555 8999999999999999999999999
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHH----------------------------hh----hc---------
Q 041800 78 TWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMK----------------------------AS----LA--------- 116 (223)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------~~----~~--------- 116 (223)
++.-+..+ ++.+++..+++...++..+.-.+.+ .+ +.
T Consensus 117 hf~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g 194 (281)
T KOG4244|consen 117 HFKIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTG 194 (281)
T ss_pred HcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 98633322 3446666655555444332211111 11 00
Q ss_pred --chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhh
Q 041800 117 --EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 117 --~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 193 (223)
.+-..++..+.+.+.|..++..|++++||+|+++|-+|+++++.|..+.......--+++ .+++|+|.+|++|+++
T Consensus 195 ~IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~l-e~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 195 AIGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLL-EGDFPNLLEYCERIRK 272 (281)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHH-hhhchHHHHHHHHHHH
Confidence 011223355666788999999999999999999999999999988877542111111333 5899999999999997
No 29
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.79 E-value=4.3e-19 Score=115.59 Aligned_cols=70 Identities=30% Similarity=0.441 Sum_probs=66.1
Q ss_pred CCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 041800 12 WVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNN 82 (223)
Q Consensus 12 ~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~ 82 (223)
..||||+++|++|+++||+|+.+.+++.+++++|+++||. |+||+|+++|.+++||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 4789999999999999999999999999889999999998 999999999999999999999999998643
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.78 E-value=7.9e-19 Score=112.48 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=65.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEe--CCeeeeehHHHHHHHHhhC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVH--NGKSIVESLIILEYIDDTW 79 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~--~g~~l~es~~I~~yl~~~~ 79 (223)
++||+++.||+|++++++|.++||+|+.+.++... ..+++++.||. |+||+|++ +|.+++||.+|++||++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 79999999999999999999999999999887543 45789999998 89999986 4689999999999999864
No 31
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=1.4e-18 Score=109.57 Aligned_cols=68 Identities=38% Similarity=0.575 Sum_probs=64.4
Q ss_pred EEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHH
Q 041800 7 KLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHN-GKSIVESLIILEYI 75 (223)
Q Consensus 7 ~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yl 75 (223)
+||+++.||||++++++|+++|++|+.+.++..+..+++.++||. |+||+|+++ |..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999988778899999998 999999974 99999999999997
No 32
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.78 E-value=9.1e-19 Score=111.01 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=66.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDT 78 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~ 78 (223)
++||+++.|++|+++|++|+++|++|+.+.++..+..++++++||. |+||+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 7999999999999999999999999999999876556689999998 99999999999999999999999763
No 33
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.77 E-value=1.7e-18 Score=110.16 Aligned_cols=71 Identities=37% Similarity=0.494 Sum_probs=65.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDD 77 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~ 77 (223)
++||+++.||+|++++++|+++|++|+.+.+++. +..+++.++||. |+||+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999864 356899999998 8999999999999999999999974
No 34
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-17 Score=118.37 Aligned_cols=178 Identities=19% Similarity=0.262 Sum_probs=128.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCCCCCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV-HNGKSIVESLIILEYIDDTWKNNPI 84 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yl~~~~~~~~l 84 (223)
|+||-+.+||||.|+|+++-.+|||++.....-++......-++. .+||+|+ ++|..+.||..|++|+++..+.+-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~--KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQ--KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcc--cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 589999999999999999999999999998876654444455555 5899999 6899999999999999999864433
Q ss_pred CCCCHHHHHHHHHHHHHh----hhhhhHHHHHh-------------hhcchh-----------hHHHHHHHHHHHHHHHH
Q 041800 85 LPRDPHQRAVARFWAKFI----DEKLLATGMKA-------------SLAEGK-----------EKELLNEEILEQMKLLE 136 (223)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~-------------~~~~~~-----------~~~~~~~~~~~~l~~le 136 (223)
-+. .+-.++.|+.-+ +-.++|.+... |...++ .......++...++.++
T Consensus 79 t~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~ 155 (215)
T COG2999 79 TGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALD 155 (215)
T ss_pred ccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHH
Confidence 332 233444444433 33333333221 111111 12445778889999999
Q ss_pred HhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhh
Q 041800 137 NELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVV 197 (223)
Q Consensus 137 ~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 197 (223)
..+.+.. -.....+.-|+.++++|+.+ ....|..| ..++..|+.+|.+...+
T Consensus 156 ~Li~~~s-~~n~~l~~ddi~vFplLRnl---t~v~gi~w-----ps~v~dy~~~msektqV 207 (215)
T COG2999 156 KLIVGPS-AVNGELSEDDILVFPLLRNL---TLVAGIQW-----PSRVADYRDNMSEKTQV 207 (215)
T ss_pred HHhcCcc-hhccccchhhhhhhHHhccc---eecccCCC-----cHHHHHHHHHHHHhhCc
Confidence 9997654 33457999999999999887 45557666 57899999999986544
No 35
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.77 E-value=2.8e-18 Score=109.76 Aligned_cols=72 Identities=42% Similarity=0.651 Sum_probs=66.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDT 78 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~ 78 (223)
++||+++.||+|+++|++|+++|++|+.+.++.. +..+++.++||. |++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988864 356789999998 99999999999999999999999863
No 36
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.76 E-value=2.1e-17 Score=116.03 Aligned_cols=124 Identities=46% Similarity=0.778 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhh
Q 041800 90 HQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHE 169 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~ 169 (223)
.++++++.|+.+.++.+.+.+...+...++..+...+.+.+.++.||++|++++|++|+++|+|||++++.+.++.....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 46889999999999888888766655544556667888999999999999989999999999999999999988754322
Q ss_pred hcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHHH
Q 041800 170 VLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVRA 213 (223)
Q Consensus 170 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 213 (223)
..+.+.+..+.+|++.+|+++|.++|++++++...+...+.++.
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 22333211367999999999999999999999998887776543
No 37
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.76 E-value=5.8e-18 Score=108.25 Aligned_cols=73 Identities=37% Similarity=0.611 Sum_probs=66.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC---CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN---KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTW 79 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~ 79 (223)
++||+++.|++|++++++|+++|++|+.+.++..+ ..+++.++||. |++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999999998643 35789999998 999999999999999999999999864
No 38
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.75 E-value=4.5e-17 Score=123.55 Aligned_cols=181 Identities=17% Similarity=0.341 Sum_probs=119.2
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCC---
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKN--- 81 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~--- 81 (223)
+++||.+..||||.+||.+|.++||+|+.++|+...+. + .+-+. |.+||+|...|+.+.||.+|+.-|+....+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~-e-Ik~Ss-ykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQ-E-IKWSS-YKKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhh-h-ccccc-cccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 68999999999999999999999999999999875322 2 23354 589999998777799999998877442210
Q ss_pred -----CCCCC------------------------C-----CHHHHHHHHHHHHHhhhhhh----HHHHHh----------
Q 041800 82 -----NPILP------------------------R-----DPHQRAVARFWAKFIDEKLL----ATGMKA---------- 113 (223)
Q Consensus 82 -----~~l~~------------------------~-----~~~~~~~~~~~~~~~~~~l~----~~~~~~---------- 113 (223)
...+| . +-..+.+-+.|..|.++.+. |.+.+.
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 00122 0 01122234455555554322 221110
Q ss_pred hh--------------------------------cchhhHHHHHHHHHHHHHHHHHhc-CCCCccccCCCCHhHHHHHHH
Q 041800 114 SL--------------------------------AEGKEKELLNEEILEQMKLLENEL-NGKDFFGGEAIGLVDIVATVV 160 (223)
Q Consensus 114 ~~--------------------------------~~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~~~~~ 160 (223)
|. ..+-+....++.+...++.+-..| .+++|++|++|++||+.++++
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 00 001111123455666666666777 458999999999999999999
Q ss_pred HhHhhhhhhhcCccccCcccchHHHHHHHHHhh
Q 041800 161 AFWFPISHEVLGVEVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 193 (223)
+..+.....+ -+. -...+|..|+-+|.+
T Consensus 327 l~sm~gc~af--kd~---~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 327 LRSMEGCQAF--KDC---LQNTSIGEWYYRMEA 354 (370)
T ss_pred hhHhhhhhHH--HHH---HhcchHHHHHHHHHH
Confidence 9888644332 222 247889999999987
No 39
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.75 E-value=1.1e-17 Score=108.39 Aligned_cols=73 Identities=34% Similarity=0.598 Sum_probs=66.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeC---CeeeeehHHHHHHHHhhC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHN---GKSIVESLIILEYIDDTW 79 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~---g~~l~es~~I~~yl~~~~ 79 (223)
++||+++. |+|++++++|+++|++|+.+.+++. ...++|+++||. |+||+|+++ |.+|+||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 79999986 9999999999999999999999864 456899999998 999999986 899999999999999987
Q ss_pred C
Q 041800 80 K 80 (223)
Q Consensus 80 ~ 80 (223)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 5
No 40
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=9.8e-18 Score=110.37 Aligned_cols=72 Identities=39% Similarity=0.674 Sum_probs=67.1
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHH
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHN-GKSIVESLIILEYID 76 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yl~ 76 (223)
+.++||+++.||+|++++++|+++|++|+.+.++.....+++.+.||. +++|+|+++ |.++.||.+|++||+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 579999999999999999999999999999999987767789999998 899999976 899999999999985
No 41
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=9.4e-18 Score=106.39 Aligned_cols=70 Identities=39% Similarity=0.693 Sum_probs=64.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
++||+++.||+|++++++|+++|++|+.+.++.. +..+++.++||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 356889999998 899999999999999999999984
No 42
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.74 E-value=9.3e-18 Score=106.98 Aligned_cols=70 Identities=33% Similarity=0.458 Sum_probs=65.1
Q ss_pred EEEecCCCcHHHHHHHHHHHcCCCceEEecCCC--CCChhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHHh
Q 041800 7 KLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS--NKSPELLKYNPIHKKIPVLVH-NGKSIVESLIILEYIDD 77 (223)
Q Consensus 7 ~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yl~~ 77 (223)
+||+++.||+|++++++|+++|++|+.+.++.. ++.++|+++||. |++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 467899999998 99999996 58999999999999975
No 43
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=9.7e-18 Score=106.37 Aligned_cols=70 Identities=34% Similarity=0.550 Sum_probs=65.1
Q ss_pred EEEEecCCCcHHHHHHHHHHH--cCCCceEEecCCCCCChhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHH
Q 041800 6 VKLYGTWVSPFSRRIELALKL--KGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV-HNGKSIVESLIILEYID 76 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~--~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~es~~I~~yl~ 76 (223)
++||+++.||+|+++|++|++ +|++|+.+.++..++.+++++.||. |++|+|+ ++|..+.||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999877778899999998 9999998 47899999999999985
No 44
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.74 E-value=7.2e-18 Score=106.67 Aligned_cols=71 Identities=27% Similarity=0.344 Sum_probs=63.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDD 77 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~ 77 (223)
++||+++.|++|+++|++|+++|++|+.+.++... ...++.++||. |++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988653 23448899998 9999999999999999999999974
No 45
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.73 E-value=1.9e-17 Score=104.99 Aligned_cols=70 Identities=29% Similarity=0.443 Sum_probs=64.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
++||+++.|+++++++++|+++|++|+.+.++.. ...+++.++||. |+||+|+++|.+|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 346889999998 999999999999999999999984
No 46
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.73 E-value=1.6e-17 Score=104.77 Aligned_cols=70 Identities=29% Similarity=0.464 Sum_probs=61.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHN-GKSIVESLIILEYIDD 77 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yl~~ 77 (223)
|+||+++.||+|+++|++|+++|++|+.+.++... .....+.+|. +++|+|+++ |.++.||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887543 3345678998 899999975 8999999999999974
No 47
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.73 E-value=2.9e-17 Score=105.01 Aligned_cols=73 Identities=33% Similarity=0.494 Sum_probs=66.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWK 80 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~ 80 (223)
++||+++. +++++++++|+++|++|+.+.++.. ...+++.+.||. +++|+|+++|.+++||.+|++||++++|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 57999886 5899999999999999999998864 467889999998 8999999999999999999999998864
No 48
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.72 E-value=1.9e-17 Score=105.24 Aligned_cols=70 Identities=39% Similarity=0.665 Sum_probs=63.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHH
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVH-NGKSIVESLIILEYID 76 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yl~ 76 (223)
++||+++.||+|+++|++|+++|++|+.+.++.. ...+++.++||. |++|+|+. +|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998764 346789999998 89999984 7889999999999985
No 49
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.72 E-value=3.4e-17 Score=104.95 Aligned_cols=73 Identities=37% Similarity=0.562 Sum_probs=65.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC---CChhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHhhCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN---KSPELLKYNPIHKKIPVLVHN-GKSIVESLIILEYIDDTWK 80 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yl~~~~~ 80 (223)
++||+++.+ ++++++++|+++|++|+.+.++..+ ..++++++||. |++|+|+++ |.+++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 579999976 5899999999999999999888753 47899999998 999999976 8999999999999999875
No 50
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.72 E-value=3.4e-17 Score=103.81 Aligned_cols=70 Identities=40% Similarity=0.667 Sum_probs=64.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
++||+++.|++|+++|++|+++|++|+.+.+++. ...++++++||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999863 456889999998 999999999999999999999985
No 51
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.69 E-value=9.2e-17 Score=102.93 Aligned_cols=72 Identities=26% Similarity=0.576 Sum_probs=62.3
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeC----CeeeeehHHHHHHHHhhC
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHN----GKSIVESLIILEYIDDTW 79 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~----g~~l~es~~I~~yl~~~~ 79 (223)
+++||+++.||+|++++++|.++||+|+.+.++.... .+ .+.||. ++||+|+++ |.++.||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 4899999999999999999999999999998876432 23 356998 899999964 789999999999999863
No 52
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.69 E-value=5.6e-16 Score=110.99 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhh
Q 041800 90 HQRAVARFWAKFIDEKLLATGMKASL-AEGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISH 168 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~ 168 (223)
..++.++.|++|....+.+.+..... .+++..+...+.+.+.|+.||++|++++|++|+++|+||+++++.+.++....
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 35788999999999988887766543 34555667788999999999999998999999999999999999887653211
Q ss_pred -hhc--CccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHhh
Q 041800 169 -EVL--GVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVRARMEG 217 (223)
Q Consensus 169 -~~~--~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 217 (223)
... +... .+++|+|.+|+++|.++|++++++.....+.+++++.++.
T Consensus 83 ~~~~~~~~~~--~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~~ 132 (142)
T cd03190 83 VQHFKCNLKR--IRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFPL 132 (142)
T ss_pred hhhcccccch--hhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCCC
Confidence 111 1111 2689999999999999999999999888888888887664
No 53
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.69 E-value=1.2e-16 Score=100.32 Aligned_cols=65 Identities=49% Similarity=0.838 Sum_probs=56.3
Q ss_pred CCcHHHHHHHHHHHcCCCceEEecCC----CCCChhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHHhh
Q 041800 13 VSPFSRRIELALKLKGVPFEYIGVDL----SNKSPELLKYNPIHKKIPVLVH-NGKSIVESLIILEYIDDT 78 (223)
Q Consensus 13 ~s~~~~~v~~~l~~~~i~~~~~~v~~----~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yl~~~ 78 (223)
+|||++|++++|+++|++|+...+.. ....++|.++||. |+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 3456899999998 89999997 789999999999999864
No 54
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.68 E-value=2.4e-16 Score=101.34 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=62.0
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcC-----CCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYN-----PIHKKIPVLVHNGKSIVESLIILEYIDDTW 79 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~-----p~~~~vP~L~~~g~~l~es~~I~~yl~~~~ 79 (223)
+++||+++.|+.|++++++|++.|++|+.+.++.. +++.+.+ |. |+||+|++||.+++||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 36899999999999999999999999999988753 2333333 57 899999999999999999999999987
Q ss_pred C
Q 041800 80 K 80 (223)
Q Consensus 80 ~ 80 (223)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 55
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.68 E-value=5.4e-16 Score=107.07 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHhhhc---chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHh
Q 041800 88 DPHQRAVARFWAKFIDEKLLATGMKASLA---EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWF 164 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~ 164 (223)
++..++.+++|+.+....+.+.+...++. .++..+...+.+.+.+..||++|++++|++|+++|+||+++++.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~ 82 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQF 82 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHH
Confidence 67899999999999999888887775553 223466778899999999999999999999999999999999987665
Q ss_pred hhhhhhcCccccCcccchHHHHHHHHHhhchhhhccC
Q 041800 165 PISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSR 201 (223)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 201 (223)
... ...+.. .+++|+|.+|+++|.++|++++++
T Consensus 83 ~~~-~~~~~~---~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 83 AHV-DPKWFD---QSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHh-hhcccC---cccCHHHHHHHHHHHcChHHHhhC
Confidence 321 111222 378999999999999999999753
No 56
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.68 E-value=2.4e-16 Score=100.41 Aligned_cols=67 Identities=30% Similarity=0.578 Sum_probs=60.6
Q ss_pred EEEEecC-------CCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 041800 6 VKLYGTW-------VSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDT 78 (223)
Q Consensus 6 ~~Ly~~~-------~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~ 78 (223)
++||+++ .||+|++++++|+++|++|+.+.++.. +.||. |++|+|+++|.++.||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-------~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-------KRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-------cCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6899888 689999999999999999999887742 57998 99999999999999999999999998
Q ss_pred CC
Q 041800 79 WK 80 (223)
Q Consensus 79 ~~ 80 (223)
++
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 64
No 57
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.68 E-value=8.1e-16 Score=104.87 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhh
Q 041800 90 HQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHE 169 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~ 169 (223)
.+++.++.|+.++++.+.+.+...+...++..+...+.+.+.+..||++|++++|++|+++|+|||++++.+.+..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~---- 77 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLP---- 77 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHH----
Confidence 4789999999999998888776655444555666788899999999999999999999999999999999876542
Q ss_pred hcCccccCcccchHHHHHHHHHhhchhhhcc
Q 041800 170 VLGVEVITQEKFPVLLKWIGKLQEIDVVNQS 200 (223)
Q Consensus 170 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 200 (223)
..|.++ ...+|+|.+|+++|.+||+++++
T Consensus 78 ~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 78 ALGIEL--PKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HcCCCC--cccchHHHHHHHHHHCCHHHHHh
Confidence 225444 25799999999999999999875
No 58
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.68 E-value=2.1e-16 Score=102.33 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=61.5
Q ss_pred EEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC----CChhhhhc-----CCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 041800 7 KLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN----KSPELLKY-----NPIHKKIPVLVHNGKSIVESLIILEYIDD 77 (223)
Q Consensus 7 ~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~----~~~~~~~~-----~p~~~~vP~L~~~g~~l~es~~I~~yl~~ 77 (223)
+||++..++.|+++|++|+++|++|+.+.+++.. ..+++... +|+ |+||+|++||.+++||.||++||++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHhh
Confidence 7999999999999999999999999999998753 12344322 298 8999999999999999999999987
Q ss_pred hC
Q 041800 78 TW 79 (223)
Q Consensus 78 ~~ 79 (223)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 59
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.68 E-value=8.8e-16 Score=107.52 Aligned_cols=120 Identities=24% Similarity=0.357 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCC--CCccccCCCCHhHHHHHHHHhHhhhhh
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNG--KDFFGGEAIGLVDIVATVVAFWFPISH 168 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~~~~~l~~~~~~~ 168 (223)
++++.+.|+++++ .+.+.+...+.. ++..+...+.+.+.+..+|+.|++ ++|++|+++|+||+++++.+.++....
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~ 79 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLGA-PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALK 79 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHH
Confidence 5788999999986 455655555555 566678888999999999999975 799999999999999999887765332
Q ss_pred hhcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHHH
Q 041800 169 EVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVRA 213 (223)
Q Consensus 169 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 213 (223)
...+.. ...+.+|+|++|+++|.++|++++++.+.+++.+.++.
T Consensus 80 ~~~~~~-~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 80 LLLGYE-FPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred hhcccc-CCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 221211 11378999999999999999999999999988888763
No 60
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.65 E-value=6.8e-16 Score=100.54 Aligned_cols=68 Identities=28% Similarity=0.498 Sum_probs=58.9
Q ss_pred cCCCcHHHHHHHHHHHcCCCceEEecCCCCCC---hhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHhhCC
Q 041800 11 TWVSPFSRRIELALKLKGVPFEYIGVDLSNKS---PELLKYNPIHKKIPVLVHN-GKSIVESLIILEYIDDTWK 80 (223)
Q Consensus 11 ~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~---~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yl~~~~~ 80 (223)
.+.||+|+++|++|.++|++|+.+.++..+.. .++ ++||. |++|+|+++ |.++.||.+|++||++++|
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 36899999999999999999999988865322 334 78998 899999998 8999999999999999875
No 61
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.64 E-value=9.8e-16 Score=97.73 Aligned_cols=71 Identities=39% Similarity=0.508 Sum_probs=58.4
Q ss_pred EEEecCCCcHHHHHHHHHHHcCCCceEEecCCC---CCChhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHh
Q 041800 7 KLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS---NKSPELLKYNPIHKKIPVLVHN-GKSIVESLIILEYIDD 77 (223)
Q Consensus 7 ~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~-g~~l~es~~I~~yl~~ 77 (223)
+|++++..+++.++|++|+++|++|+.+.+++. ++.++|.+.||..|++|+|+++ |.+|+||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 444444555899999999999999999999874 2348999999952799999998 9999999999999985
No 62
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.1e-15 Score=114.39 Aligned_cols=195 Identities=18% Similarity=0.238 Sum_probs=145.7
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCC--ceEEecC--CCCCC----------------------hhhhhcCCCC---Cc
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVP--FEYIGVD--LSNKS----------------------PELLKYNPIH---KK 54 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~--~~~~~v~--~~~~~----------------------~~~~~~~p~~---~~ 54 (223)
+++.||.+-.|||++|..++-+++|++ .....|+ +.... +-|..-.|.| -+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 579999999999999999999999986 2222332 11110 1111223322 38
Q ss_pred ccEEEeC--Cee-eeehHHHHHHHHhhCC-----CCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHh-hhcchhhHHHHH
Q 041800 55 IPVLVHN--GKS-IVESLIILEYIDDTWK-----NNPILPRDPHQRAVARFWAKFIDEKLLATGMKA-SLAEGKEKELLN 125 (223)
Q Consensus 55 vP~L~~~--g~~-l~es~~I~~yl~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 125 (223)
||||.+. .++ -.||..|++.+...|. ...++|.+ .+.+++.+.+++...+-..+... |-...+..+++.
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 8999973 344 4699999999876553 24588874 68889999999887776666554 334677888899
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhh---hhhcCccccCcccchHHHHHHHHHhhchhhhccCC
Q 041800 126 EEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPIS---HEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRP 202 (223)
Q Consensus 126 ~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~---~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 202 (223)
+.+-+.|+.||+.|+++.|++|+++|-||+-+++.|.++... ...++..-| ..||+|..|...+.+.|.|.++..
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI--~dypnL~~yLr~LYq~pg~~~T~d 285 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRI--RDYPNLWGYLRDLYQLPGFAETVD 285 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchh--hcCchHHHHHHHHhcCcccccccc
Confidence 999999999999999999999999999999999988887421 112344444 459999999999999999998754
No 63
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.63 E-value=1.6e-15 Score=96.00 Aligned_cols=66 Identities=39% Similarity=0.570 Sum_probs=59.9
Q ss_pred ecCCCcHHHHHHHHHHHcCCCceEEecCCCC--CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 10 GTWVSPFSRRIELALKLKGVPFEYIGVDLSN--KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 10 ~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~--~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
....|+++++++++|+++|++|+.+.++..+ ..++++++||. |++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 4668999999999999999999999988753 45889999998 999999999999999999999984
No 64
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.62 E-value=2.4e-15 Score=94.15 Aligned_cols=70 Identities=47% Similarity=0.702 Sum_probs=63.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCCh-hhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSP-ELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~-~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|.++.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998654333 48889998 899999999999999999999984
No 65
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.62 E-value=4.8e-15 Score=102.06 Aligned_cols=104 Identities=19% Similarity=0.353 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhcc---------hhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHH
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLAE---------GKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVA 161 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l 161 (223)
+++.++.|+.+..+.+.+.+....... +...+...+.+.+.+..||+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 478899999999888888765443321 22345567789999999999999889999999999999999988
Q ss_pred hHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccC
Q 041800 162 FWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSR 201 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 201 (223)
.++.. .+... +++|+|.+|+++|.++|++++++
T Consensus 82 ~~~~~----~~~~~---~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPG----VGLDL---SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhh----cCCCh---hhChHHHHHHHHHHhCHHhHhhC
Confidence 87632 23333 68999999999999999999764
No 66
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.6e-15 Score=111.10 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=142.4
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCC--ceEEecCC--CCCChhhhh------------------------------cC
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVP--FEYIGVDL--SNKSPELLK------------------------------YN 49 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~--~~~~~v~~--~~~~~~~~~------------------------------~~ 49 (223)
+++.||.+-.|||++|..+.++++|+. .....+.. ++....|.. -+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 578999999999999999999999985 22222211 111111111 12
Q ss_pred CCC---CcccEEEeC---CeeeeehHHHHHHHH---h------hCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHh-
Q 041800 50 PIH---KKIPVLVHN---GKSIVESLIILEYID---D------TWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMKA- 113 (223)
Q Consensus 50 p~~---~~vP~L~~~---g~~l~es~~I~~yl~---~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 113 (223)
|.| -+||||-|. ..+-.||..|++.+. . ..+...|+|.+ .++.++.+..|+...+-..+...
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk~G 193 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYKCG 193 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceeeec
Confidence 211 389999974 355579999999998 2 22334578764 68889999999877666555443
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHhcCCCC--ccccCCCCHhHHHHHHHHhHhhhh---hhhcCccccCcccchHHHHHH
Q 041800 114 SLAEGKEKELLNEEILEQMKLLENELNGKD--FFGGEAIGLVDIVATVVAFWFPIS---HEVLGVEVITQEKFPVLLKWI 188 (223)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~~~~~l~~~~~~---~~~~~~~~~~~~~~p~l~~~~ 188 (223)
|-...+..+...+++-+.|+.+|+.|+++. |++|+++|.|||.+++.+-++... ...++...+ +++||+|..|.
T Consensus 194 FA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i-r~~Yp~l~~~l 272 (319)
T KOG2903|consen 194 FAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTI-RDEYPNLHNWL 272 (319)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhh-hccCcHHHHHH
Confidence 334677778888999999999999998865 899999999999999988777421 122455555 57999999999
Q ss_pred HHHhh-chhhhccCCC
Q 041800 189 GKLQE-IDVVNQSRPP 203 (223)
Q Consensus 189 ~~~~~-~p~~~~~~~~ 203 (223)
.++.+ .|.|..+..=
T Consensus 273 k~iY~~~~~~~~Ttd~ 288 (319)
T KOG2903|consen 273 KNIYWNIPGFSSTTDF 288 (319)
T ss_pred HHHHhhccchhhccch
Confidence 99998 8888876543
No 67
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.59 E-value=3e-14 Score=99.10 Aligned_cols=115 Identities=22% Similarity=0.350 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcC---CCCccccCCCCHhHHHHHHHHhHh
Q 041800 88 DPHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELN---GKDFFGGEAIGLVDIVATVVAFWF 164 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aD~~~~~~l~~~ 164 (223)
|+..|+.+++++.+. ..+...+.......+ ..+.+.+.++.||+.|+ +++|++| ++|+|||++++.+.++
T Consensus 1 d~~~ra~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~ 73 (120)
T cd03203 1 DPAKREFADELLAYT-DAFTKALYSSLIKGD-----PSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERF 73 (120)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHH
Confidence 456899999998883 223222222222111 12344667788888886 4899999 9999999999988766
Q ss_pred hhh-hhhcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHH
Q 041800 165 PIS-HEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHV 211 (223)
Q Consensus 165 ~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 211 (223)
... ....+.++ .+++|+|.+|+++|.++|+++++.++.+++...+
T Consensus 74 ~~~~~~~~~~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 74 QIFLSELFNYDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHhcCccc--cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 421 12235555 3689999999999999999999999988877654
No 68
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.58 E-value=3.2e-14 Score=99.67 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=83.2
Q ss_pred hhhhHHHHHhhhc-chhhHHHHHHHHHHHHHHHHHhcCC----------------CCccccCCCCHhHHHHHHHHhHhhh
Q 041800 104 EKLLATGMKASLA-EGKEKELLNEEILEQMKLLENELNG----------------KDFFGGEAIGLVDIVATVVAFWFPI 166 (223)
Q Consensus 104 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~aD~~~~~~l~~~~~ 166 (223)
+.+++.+...+.+ +++..+...+.+...|..||.+|++ ++|++|+++|+|||.+++.+.++..
T Consensus 9 ~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~ 88 (134)
T cd03198 9 EDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKV 88 (134)
T ss_pred HHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4456666555544 3455677788999999999999986 6799999999999999999877643
Q ss_pred hh-hhcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHH
Q 041800 167 SH-EVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVR 212 (223)
Q Consensus 167 ~~-~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 212 (223)
.. ...+..+ ...+|+|.+|++|+.+||+|++++...+.+...++
T Consensus 89 ~~~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 89 VAKKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHHhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 21 1125554 37899999999999999999999998877766553
No 69
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.58 E-value=3.7e-14 Score=98.60 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=79.1
Q ss_pred hhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCC-CCccccCCCCHhHHHHHHHHhHhhhh-hhhcCccccCcccch
Q 041800 105 KLLATGMKASLAEGKEKELLNEEILEQMKLLENELNG-KDFFGGEAIGLVDIVATVVAFWFPIS-HEVLGVEVITQEKFP 182 (223)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~~l~~~~~~-~~~~~~~~~~~~~~p 182 (223)
.+++.+.......++ .+...+.+.+.|..||..|++ ++|++|+++|+||+++++.+.++... ....+... .+.+|
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~~~P 89 (121)
T cd03201 13 KIFSTFVGFLKSKDS-NDGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PESLT 89 (121)
T ss_pred HHHHHHHHHHHCCcH-HHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--cccch
Confidence 345554444443332 355667889999999999985 79999999999999999987766422 11123333 37899
Q ss_pred HHHHHHHHHhhchhhhccCCChHHHHHHHH
Q 041800 183 VLLKWIGKLQEIDVVNQSRPPREKHVAHVR 212 (223)
Q Consensus 183 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 212 (223)
+|.+|+++|.+||+|+++++..+++...++
T Consensus 90 ~l~~w~~rl~~rps~~~t~~~~~~~~~~~~ 119 (121)
T cd03201 90 SVKSYMKALFSRESFVKTKAEKEDVIAGWA 119 (121)
T ss_pred HHHHHHHHHHCCchhhhcCCCHHHHHHHhc
Confidence 999999999999999999999888877664
No 70
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.57 E-value=1.3e-14 Score=91.59 Aligned_cols=64 Identities=31% Similarity=0.511 Sum_probs=57.1
Q ss_pred EEEecC-------CCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 041800 7 KLYGTW-------VSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDT 78 (223)
Q Consensus 7 ~Ly~~~-------~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~ 78 (223)
.||.++ .||+|++++++|+++|++|+.+.++... +||. |++|+|+++|..+.||.+|++||+++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 577666 9999999999999999999999988532 6898 89999999999999999999999864
No 71
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.57 E-value=2.7e-14 Score=99.03 Aligned_cols=105 Identities=17% Similarity=0.330 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhc----chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhh
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLA----EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPI 166 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~ 166 (223)
++++++.|+.+..+.+.+.....+.. .+...+...+++.+.++.||++|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 47888999988877777766554432 23445667888999999999999988999999999999999999988742
Q ss_pred hhhhcCccccCcccchHHHHHHHHHhhchhhhccC
Q 041800 167 SHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSR 201 (223)
Q Consensus 167 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 201 (223)
..+.+. +.+|+|.+|+++|.++|++++..
T Consensus 82 ---~~~~~~---~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 ---LLPLDL---SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred ---hcCCCh---hhCchHHHHHHHHHcccchHHHH
Confidence 113333 67999999999999999999843
No 72
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.57 E-value=7.7e-14 Score=96.55 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHhhhc-------------chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhH
Q 041800 88 DPHQRAVARFWAKFIDEKLLATGMKASLA-------------EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVD 154 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD 154 (223)
|+..++.++.|+.++++.+++.+...+.. .++..+.....+.+.|..||++|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999888888776554321 12334667788999999999999988999999999999
Q ss_pred HHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhh
Q 041800 155 IVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVV 197 (223)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 197 (223)
|++++.+.++.. .+.++ ...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~----~~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKV----VKLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHh----cCCCC--ccccHHHHHHHHHHHhccCC
Confidence 999999987642 24444 36899999999999999974
No 73
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.56 E-value=6.6e-14 Score=97.21 Aligned_cols=103 Identities=19% Similarity=0.351 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhHHHHHhhh----cc-----------hhhHHHHHHHHHHHHHHHHHhcCCCCccccCCC
Q 041800 86 PRDPHQRAVARFWAKFIDEKLLATGMKASL----AE-----------GKEKELLNEEILEQMKLLENELNGKDFFGGEAI 150 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~-----------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 150 (223)
|.++.++++++.|+.+..+.+.+.+..... .. +...+.....+.+.|+.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 457889999999999998888887654321 11 122234456789999999999999999999999
Q ss_pred CHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhch
Q 041800 151 GLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEID 195 (223)
Q Consensus 151 t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 195 (223)
|+|||++++.+.++... +.. .+.+|+|.+|++++.++|
T Consensus 82 t~ADi~l~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALAR----GPL---LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHc----Ccc---cccCchHHHHHHHHhcCC
Confidence 99999999988876321 322 378999999999999886
No 74
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.56 E-value=2.7e-14 Score=99.46 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhh----c--c--hh-hHHHHHHHHHHHHHHHHHhcC--CCCccccCCCCHhHHHHH
Q 041800 90 HQRAVARFWAKFIDEKLLATGMKASL----A--E--GK-EKELLNEEILEQMKLLENELN--GKDFFGGEAIGLVDIVAT 158 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~----~--~--~~-~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~~ 158 (223)
.+++.++.|+.++.+.+.+.+...+. . . ++ ..+...+.+.+.|..||++|+ .++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 46889999999998877765322211 1 1 11 123344668899999999997 457999999999999999
Q ss_pred HHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCCh
Q 041800 159 VVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPR 204 (223)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 204 (223)
+.+.+... .+.++ +.+|+|++|++++.++|+++++++.+
T Consensus 82 ~~~~~~~~----~~~~~---~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 82 PQVYNARR----FGVDL---SPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHH----hCCCc---ccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 98876632 14443 78999999999999999999987653
No 75
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.55 E-value=7.1e-14 Score=97.39 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhcc--hhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhh
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLAE--GKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISH 168 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~ 168 (223)
+++.++.+++.+.+ +...+...++.. +...+...+.+.+.+..||++|++++|++|+++|+||+++++.+.++...
T Consensus 2 e~~~id~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~- 79 (121)
T cd03209 2 ERIRVDMLEQQAMD-LRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIF- 79 (121)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHh-
Confidence 45677777776655 444444444421 23334456778889999999999889999999999999999988887432
Q ss_pred hhcCccccCcccchHHHHHHHHHhhchhhhccCCChHH
Q 041800 169 EVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREK 206 (223)
Q Consensus 169 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 206 (223)
+... .+.+|+|.+|++|+.++|++++++.+++.
T Consensus 80 ---~~~~--~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 80 ---EPDC--LDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred ---Cccc--cccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 2222 27899999999999999999999887643
No 76
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.55 E-value=6.4e-14 Score=97.04 Aligned_cols=106 Identities=11% Similarity=0.218 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHh----hh-c------chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHH
Q 041800 91 QRAVARFWAKFIDEKLLATGMKA----SL-A------EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATV 159 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~----~~-~------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 159 (223)
+++++..|+.+....+.+.+... .+ . +....+...+.+.+.++.||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 46788888888777776654432 11 1 2223345677899999999999998999999999999999999
Q ss_pred HHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccC
Q 041800 160 VAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSR 201 (223)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 201 (223)
.+.++.. . +.... .+.+|+|++|++++.++|++++++
T Consensus 82 ~~~~~~~---~-~~~~~-~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMA---T-PFAKL-FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHH---c-cchhh-hhcCchHHHHHHHHHhCHHHHhhC
Confidence 8877632 1 21110 267999999999999999998754
No 77
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.52 E-value=4.5e-14 Score=97.10 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhh----c---chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHh
Q 041800 92 RAVARFWAKFIDEKLLATGMKASL----A---EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWF 164 (223)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~ 164 (223)
++.++.|+.|.+..+.+.+...+. . .+...+...+.+.+.++.+|+.|++++|++|+++|+|||++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~ 81 (113)
T cd03178 2 RYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRL 81 (113)
T ss_pred hHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHH
Confidence 678889999988877776544321 1 133345567888999999999999889999999999999999988876
Q ss_pred hhhhhhcCccccCcccchHHHHHHHHHhhchhhhccC
Q 041800 165 PISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSR 201 (223)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 201 (223)
... +..+ .+++|++.+|+++|.++|++++++
T Consensus 82 ~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 82 EWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred Hhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 422 3332 378999999999999999999864
No 78
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.52 E-value=1.3e-13 Score=96.22 Aligned_cols=109 Identities=21% Similarity=0.276 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhc-------chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHh
Q 041800 92 RAVARFWAKFIDEKLLATGMKASLA-------EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWF 164 (223)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~ 164 (223)
++.++.|+.+.++.+.+.+...+.. +....+...+.+.+.|+.||+.|++++|++|+++|+||+++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~ 81 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLG 81 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHH
Confidence 6778999999988888776544331 223456677888999999999999889999999999999999988876
Q ss_pred hhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCCh
Q 041800 165 PISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPR 204 (223)
Q Consensus 165 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 204 (223)
... ..+..+ .+.+|++.+|++++.++|+|++++.+.
T Consensus 82 ~~~--~~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~ 117 (123)
T cd03181 82 FTY--VFDKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEV 117 (123)
T ss_pred HHH--HcCHHH--HHhChHHHHHHHHHHcCHHHHHHcCCC
Confidence 321 112222 267999999999999999999987763
No 79
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.51 E-value=1.6e-13 Score=91.40 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=75.3
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCC
Q 041800 72 LEYIDDTWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNGKDFFGGEAIG 151 (223)
Q Consensus 72 ~~yl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 151 (223)
++||++..+ ++|.++.+.+.++.|++.....+.. ....++.+.+..+|++|++++|++|+++|
T Consensus 1 ~r~~~~~~~---~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~le~~L~~~~fl~Gd~~t 63 (96)
T cd03200 1 ARFLYRLLG---PAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRALNSALGRSPWLVGSEFT 63 (96)
T ss_pred CchHHHHhc---ccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHcCCCccCCCCCC
Confidence 478888833 8999999999999999976544421 13455567888999999999999999999
Q ss_pred HhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhh
Q 041800 152 LVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 152 ~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 193 (223)
+|||++++.+.+. +.. .+.+|+|.+|++||.+
T Consensus 64 iADi~l~~~l~~~-------~~~---~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 64 VADIVSWCALLQT-------GLA---SAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHHHHHc-------ccc---cccChHHHHHHHHHHh
Confidence 9999999877542 222 2679999999999975
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.51 E-value=2.6e-13 Score=92.78 Aligned_cols=100 Identities=21% Similarity=0.333 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhh----c-----chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHH
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASL----A-----EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVA 161 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~----~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l 161 (223)
+++.+++|+.+..+.+.+.+...+. . ++...+...+.+.+.|+.+|++|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4778899999998888887655432 1 112234567889999999999999889999999999999999887
Q ss_pred hHhhhhhhhcCccccCcccchHHHHHHHHHhhchhh
Q 041800 162 FWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVV 197 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 197 (223)
.... .. +.. ..++|+|.+|+++|.++|+|
T Consensus 82 ~~~~---~~-~~~---~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWF---EL-PIE---RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHH---Hc-ccc---cccCchHHHHHHHHHhCCCC
Confidence 5331 11 222 37899999999999999975
No 81
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.51 E-value=1.7e-13 Score=96.13 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhc-chhhHHHHHHHHHHHHHHHHHhcCC---CCccccCCCCHhHHHHHHHHhHhhh
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLA-EGKEKELLNEEILEQMKLLENELNG---KDFFGGEAIGLVDIVATVVAFWFPI 166 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~~~~~l~~~~~ 166 (223)
+.+.++.+++.+.+ ++..+...++. .+...+...+.+.+.+..||++|++ ++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVED-LRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 56677777766554 45555444443 2334455667788999999999974 5899999999999999998887742
Q ss_pred hhhhcCccccCcccchHHHHHHHHHhhchhhhccCCChH
Q 041800 167 SHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPRE 205 (223)
Q Consensus 167 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 205 (223)
. +... .+.+|+|.+|++||.++|++++++....
T Consensus 82 ~----~~~~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 82 L----APGC--LDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred h----ChHh--hhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 1 1122 2789999999999999999999876643
No 82
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2e-12 Score=94.23 Aligned_cols=171 Identities=15% Similarity=0.251 Sum_probs=125.7
Q ss_pred CCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCCCC-CCHHH
Q 041800 13 VSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDTWKNNPILP-RDPHQ 91 (223)
Q Consensus 13 ~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~~~~~~l~~-~~~~~ 91 (223)
...-|..|..+|...++||..+... +.+| ++|- |+||.|..|.++++|-..|++++..+.-. |.. -+..+
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~--l~s~lsE~q 103 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVT--LTSWLSEDQ 103 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccc--hhhhhhhHH
Confidence 3346899999999999999988765 3334 5786 89999999999999999999999988532 322 24457
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhh-----------------------------------------c-chhhHHHHHHHHH
Q 041800 92 RAVARFWAKFIDEKLLATGMKASL-----------------------------------------A-EGKEKELLNEEIL 129 (223)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------------~-~~~~~~~~~~~~~ 129 (223)
++..+..+.+++..+..+-....+ . ++...++..+++.
T Consensus 104 kadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vd 183 (257)
T KOG3027|consen 104 KADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVD 183 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHH
Confidence 888888877776543322111110 0 2334467788899
Q ss_pred HHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhh-cCccccCcccchHHHHHHHHHhh
Q 041800 130 EQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEV-LGVEVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 130 ~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~l~~~~~~~~~ 193 (223)
.+++.|+.+|+..+||.|++||-+|..+++.+..+.+..-. ....-+ ..+|++|-++++|+.+
T Consensus 184 kc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~-lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 184 KCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANI-LKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHH-HHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999988777533111 111111 3789999999999986
No 83
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.49 E-value=3.5e-13 Score=95.80 Aligned_cols=108 Identities=18% Similarity=0.305 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhcchhhHH----HH-HHHHHHHHHHHHHhcC--CCCccccCCCCHhHHHHHHHHhH
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLAEGKEKE----LL-NEEILEQMKLLENELN--GKDFFGGEAIGLVDIVATVVAFW 163 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~-~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~~~~l~~ 163 (223)
+.+.++.+++.+.+ +...+....+..++... .. .+.+.+.|+.||++|+ +++|++|+++|+||+++++.+.+
T Consensus 3 e~a~iD~i~~~v~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTAD-LMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHH
Confidence 56777887777665 33334444433222222 22 2345789999999997 67899999999999999999988
Q ss_pred hhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCChH
Q 041800 164 FPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPRE 205 (223)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 205 (223)
+... .... .+.+|+|.+|++||.++|++++++.+..
T Consensus 82 ~~~~----~~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 82 VEEL----DPSL--LSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHh----chhh--hccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 7421 1222 2789999999999999999999887543
No 84
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.47 E-value=1.2e-13 Score=93.37 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhh
Q 041800 119 KEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVN 198 (223)
Q Consensus 119 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 198 (223)
+..+....++.+.++.||++|++++|++|+++|+|||++++.+.+... . + . .+.+|+|++|+++++++|+++
T Consensus 26 ~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~---~-~--~--~~~~p~l~~w~~~~~~~p~~~ 97 (103)
T cd03207 26 PARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQ---F-G--L--LPERPAFDAYIARITDRPAFQ 97 (103)
T ss_pred chhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHH---c-C--C--CCCChHHHHHHHHHHcCHHHH
Confidence 345556788999999999999989999999999999999999888732 1 2 2 268999999999999999999
Q ss_pred ccCC
Q 041800 199 QSRP 202 (223)
Q Consensus 199 ~~~~ 202 (223)
++..
T Consensus 98 ~~~~ 101 (103)
T cd03207 98 RAAA 101 (103)
T ss_pred HHhc
Confidence 8765
No 85
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=5.9e-13 Score=91.73 Aligned_cols=103 Identities=18% Similarity=0.126 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhh----hc---chhhHHHHHHHHHHHHHHHHHhcC-CCCccccCCCCHhHHHHHHHH
Q 041800 90 HQRAVARFWAKFIDEKLLATGMKAS----LA---EGKEKELLNEEILEQMKLLENELN-GKDFFGGEAIGLVDIVATVVA 161 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~---~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~~~~~l 161 (223)
.+++.++.|+.++++.+.+...... +. .+...+...+.+.+.+..+|..|+ +++||+| .+|+||+++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 4789999999999999887532211 11 112446678888999999999995 5589999 5999999999999
Q ss_pred hHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCC
Q 041800 162 FWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRP 202 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 202 (223)
.|+.. .|.++ + |++.+|++||.+||+|++.++
T Consensus 81 ~~~~~----~g~~l---~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVL----NGDPV---P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHH----cCCCC---C--HHHHHHHHHHHCCHHHHHHHh
Confidence 98743 26665 3 999999999999999998764
No 86
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.45 E-value=5.9e-13 Score=93.37 Aligned_cols=104 Identities=22% Similarity=0.305 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhh--------c----chhhHHHHHHHHHHHHHHHHHhc-CCCCccccCCCCHhHHHHH
Q 041800 92 RAVARFWAKFIDEKLLATGMKASL--------A----EGKEKELLNEEILEQMKLLENEL-NGKDFFGGEAIGLVDIVAT 158 (223)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~--------~----~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~~~ 158 (223)
++.++.|+.|..+.+.+.+...+. . +++..+...+.+.+.+..+|++| ++++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 345677777776666554332110 1 23334556678899999999984 5578999999999999999
Q ss_pred HHHhHhhhhhhhcCccccCcccchHHHHHHHHHhh--chhhhccC
Q 041800 159 VVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQE--IDVVNQSR 201 (223)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~~ 201 (223)
+.+.+... .+.+. .+++|+|.+|+++|.+ +|+++++.
T Consensus 82 ~~~~~~~~----~~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEA----AGYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHh----cCCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 98766532 24433 3789999999999999 89998754
No 87
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.43 E-value=1.5e-12 Score=86.58 Aligned_cols=71 Identities=23% Similarity=0.406 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhch
Q 041800 120 EKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEID 195 (223)
Q Consensus 120 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 195 (223)
..+...+.+.+.|+.+|+.|++++|++|+++|+||+++++.+.++.... .... .+++|+|.+|+++|.++|
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~----~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG----PDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT----TTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC----CCcc-cccCHHHHHHHHHHHcCC
Confidence 4566788899999999999999999999999999999999999885432 2221 278999999999999987
No 88
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=7e-13 Score=89.19 Aligned_cols=71 Identities=23% Similarity=0.494 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhh
Q 041800 120 EKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVV 197 (223)
Q Consensus 120 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 197 (223)
..+...+++.+.++.+|++|++++|++|+++|+||+++++.+.+.. ..+.. .+++|+|.+|+++|.++|++
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~----~~~~~---~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAP----EGGVD---LEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHh----ccCCC---hhhCcHHHHHHHHHHhCcCC
Confidence 4456788999999999999999999999999999999999886542 11322 37899999999999999975
No 89
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.37 E-value=3.1e-12 Score=79.97 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHH
Q 041800 120 EKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGK 190 (223)
Q Consensus 120 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 190 (223)
..+...+++.+.++.||.+|++++|++|++||+||+++++.+.++..... +..+ .+.+|+|.+|++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999865422 3333 4899999999987
No 90
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.35 E-value=5e-12 Score=79.19 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 041800 12 WVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDT 78 (223)
Q Consensus 12 ~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~ 78 (223)
+.+++|.+++++|++.|+||+.+.... . ...+|. |+||+|++||.+++||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~---~---~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN---A---EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC---c---cccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 356789999999999999999884321 1 125787 99999999999999999999999764
No 91
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.30 E-value=1.2e-11 Score=79.30 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=63.6
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
.+++||+.+.||+|.+++-+|...||+|+.+.++-.....++...++. .++|++..||..+.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 579999999999999999999999999999988755444566667776 799999999999999999999984
No 92
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.30 E-value=1.3e-11 Score=83.84 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCC----------CccccCCCCHhHHHHHHHHhHhhhhhhhcCccc--cCcccchHHHHH
Q 041800 120 EKELLNEEILEQMKLLENELNGK----------DFFGGEAIGLVDIVATVVAFWFPISHEVLGVEV--ITQEKFPVLLKW 187 (223)
Q Consensus 120 ~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~--~~~~~~p~l~~~ 187 (223)
..+.....+.+.|+.||.+|.++ +|++|+++|+|||++++.+.++... +.+. .....+|+|.+|
T Consensus 26 ~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l~~w 101 (111)
T cd03204 26 YLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNLEAY 101 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccChHHHHH
Confidence 34667888999999999999754 5999999999999999999887422 2221 002579999999
Q ss_pred HHHHhhchhh
Q 041800 188 IGKLQEIDVV 197 (223)
Q Consensus 188 ~~~~~~~p~~ 197 (223)
++||.+||+|
T Consensus 102 ~~rv~aRpsf 111 (111)
T cd03204 102 FERVLQRESF 111 (111)
T ss_pred HHHHHcCCCC
Confidence 9999999985
No 93
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.30 E-value=9.2e-12 Score=84.31 Aligned_cols=95 Identities=21% Similarity=0.373 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhh---------cchhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHH
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASL---------AEGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVA 161 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l 161 (223)
+++.++.|+.+..+.+.+.+..... .+++..+...+++.+.++.||..|++++|+.|+++|+|||++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 4788999999887777766543211 1234456778889999999999998889999999999999999999
Q ss_pred hHhhhhhhhcCccccCcccchHHHHHHHHHh
Q 041800 162 FWFPISHEVLGVEVITQEKFPVLLKWIGKLQ 192 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 192 (223)
.++.. .+.+. .++|+|.+|++++.
T Consensus 82 ~~~~~----~~~~~---~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADE----GGFDL---ADYPAIRAWLARIE 105 (105)
T ss_pred Hhccc----cCCCh---HhCccHHHHHHhhC
Confidence 88732 24333 67999999999874
No 94
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.26 E-value=6.5e-11 Score=81.46 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHhc---CCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchh
Q 041800 120 EKELLNEEILEQMKLLENEL---NGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDV 196 (223)
Q Consensus 120 ~~~~~~~~~~~~l~~le~~L---~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 196 (223)
..+...+.+.+.+..+|..| ++++|++|+ +|+||+++++++.+... .+.+. .|+|.+|++|+.++|+
T Consensus 38 ~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~----~~~~~-----~P~l~~~~~rv~~rPs 107 (114)
T cd03194 38 LSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRT----YGLPL-----SPAAQAYVDALLAHPA 107 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHH----cCCCC-----CHHHHHHHHHHHCCHH
Confidence 34555666666666666665 467899999 99999999999888732 14332 3999999999999999
Q ss_pred hhccCC
Q 041800 197 VNQSRP 202 (223)
Q Consensus 197 ~~~~~~ 202 (223)
+++.+.
T Consensus 108 v~~~~~ 113 (114)
T cd03194 108 MQEWIA 113 (114)
T ss_pred HHHHHh
Confidence 998753
No 95
>PRK10638 glutaredoxin 3; Provisional
Probab=99.25 E-value=4.1e-11 Score=77.68 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=63.9
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 3 EEEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 3 ~~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
|+++++|+.+.||||++++.+|..+|++|+.+.++... ..+++.+.++. .++|+++.+|..+.+...+..+-.
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 34899999999999999999999999999999987653 45678889997 899999999999999888877654
No 96
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.25 E-value=2e-11 Score=81.91 Aligned_cols=95 Identities=21% Similarity=0.381 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcCCCC--ccccCCCCHhHHHHHHHHhHhhh
Q 041800 89 PHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENELNGKD--FFGGEAIGLVDIVATVVAFWFPI 166 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~~~~~l~~~~~ 166 (223)
+..++.++.|+++.. ............+...+...+.+.+.+..++++|++++ |++|++||+||+++++.|..+..
T Consensus 3 ~~~~a~i~~W~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~ 80 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV--AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW 80 (99)
T ss_dssp -TTHHHHHHHHH-GH--CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccc--hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh
Confidence 345677788888441 00000000111334556678889999999999998766 99999999999999998865531
Q ss_pred hhhhcCccccCcccchHHHHHHHHHhh
Q 041800 167 SHEVLGVEVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 167 ~~~~~~~~~~~~~~~p~l~~~~~~~~~ 193 (223)
. .+ .+.+|+|.+|++||++
T Consensus 81 -----~-~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 81 -----A-DF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp -----C-HH--TTTCHHHHHHHHHHHT
T ss_pred -----c-cc--ccccHHHHHHHHhhcC
Confidence 2 22 2589999999999974
No 97
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.2e-09 Score=85.01 Aligned_cols=170 Identities=18% Similarity=0.273 Sum_probs=124.6
Q ss_pred CCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHHhhCCCCCCCCC-CHH
Q 041800 13 VSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVH-NGKSIVESLIILEYIDDTWKNNPILPR-DPH 90 (223)
Q Consensus 13 ~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yl~~~~~~~~l~~~-~~~ 90 (223)
.++-|..+.+++++.+-|.+.....- +| .+|. |++|+|+. +|..+++-.-|+.||.....+-.+-+. ...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN----~~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN----PW---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC----CC---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 67889999999999996666555442 22 2666 89999995 679999999999999884222112222 367
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhc-------------------------------------------chhhHHHHHHH
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLA-------------------------------------------EGKEKELLNEE 127 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 127 (223)
+.+....|..+..+.+.+++...++- ..+..++....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 88899999999999888887665531 11134455666
Q ss_pred HHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhh-h--hcCccccCcccchHHHHHHHHHhh
Q 041800 128 ILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISH-E--VLGVEVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 128 ~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~-~--~~~~~~~~~~~~p~l~~~~~~~~~ 193 (223)
..++++.|.+.|+...|++|++||-.|+.++..+..+.... + ..-..+ ..++||.++++++..
T Consensus 168 Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l---~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHL---LAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHH---HhcchHHHHHHHHHH
Confidence 78899999999999999999999999999999887632111 0 011122 348999999999987
No 98
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.24 E-value=2.7e-11 Score=80.91 Aligned_cols=92 Identities=25% Similarity=0.479 Sum_probs=67.1
Q ss_pred HHHHHHhhhhhhHHHHHhhhc-------chhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhh
Q 041800 96 RFWAKFIDEKLLATGMKASLA-------EGKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISH 168 (223)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~ 168 (223)
+.|+.+..+.+.+.+...+.. .++..+...+.+.+.++.||++|++++|++|+++|+||+.+++.+.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 345555555555544443332 2445566788899999999999999999999999999999999999885432
Q ss_pred hhcCccccCcccchHHHHHHHHH
Q 041800 169 EVLGVEVITQEKFPVLLKWIGKL 191 (223)
Q Consensus 169 ~~~~~~~~~~~~~p~l~~~~~~~ 191 (223)
...+ + .+.+|++.+|+++|
T Consensus 82 ~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred hhhh--h--hccCccHHHHHHhC
Confidence 2111 2 37899999999875
No 99
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.23 E-value=8.7e-11 Score=79.44 Aligned_cols=95 Identities=23% Similarity=0.232 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhc------chhhHHHHHHHHHHHHHHHHHhcCC--CCccccCCCCHhHHHHHHHHh
Q 041800 91 QRAVARFWAKFIDEKLLATGMKASLA------EGKEKELLNEEILEQMKLLENELNG--KDFFGGEAIGLVDIVATVVAF 162 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~~~~~l~ 162 (223)
+++.++.+++...+ +.......++. .++......+.+.+.++.||++|++ ++|++|+++|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 46677887777544 55555555553 2445566678889999999999977 899999999999999999998
Q ss_pred HhhhhhhhcCccccCcccchHHHHHHHHH
Q 041800 163 WFPISHEVLGVEVITQEKFPVLLKWIGKL 191 (223)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 191 (223)
++.... ...+ ...+|+|.+|++++
T Consensus 81 ~~~~~~---~~~~--~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLD---PKLL--LKKYPKLKALRERV 104 (104)
T ss_pred HHHhhC---chhh--HHhChhHHHHHHhC
Confidence 874321 1111 26899999999875
No 100
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.20 E-value=1.2e-10 Score=76.29 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcC----ccccCcccchHHHHHHHHHh
Q 041800 123 LLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLG----VEVITQEKFPVLLKWIGKLQ 192 (223)
Q Consensus 123 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~----~~~~~~~~~p~l~~~~~~~~ 192 (223)
...+++.+.++.+|++|++++|++|+++|+|||++++.+.++... .... ..+ +.+|+|++|++|+.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~-~~~~~~~~~~~---~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYA-PLPNSALQLIL---KEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhc-CCCChHHHHHH---HhCcHHHHHHHHhC
Confidence 567788999999999999999999999999999999988877421 1111 122 67999999999974
No 101
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.19 E-value=1.6e-10 Score=72.74 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=61.2
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
+++||+.+.||+|.+++-+|...|++|+.+.++.......+...+.. .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999988755433445555665 689999999999999999999974
No 102
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.18 E-value=9.1e-11 Score=81.99 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhh
Q 041800 121 KELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 121 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 193 (223)
.+...+.+.+.|+.+|++|++++|+.|+++|+||+++++.+.+... ..+.++ .+.+|+|.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~---~~~~~~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARI---VSPFPL--LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHH---cCcccc--cccCChHHHHHHHHhc
Confidence 4567788999999999999999999999999999999999988742 224443 3789999999999976
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.08 E-value=9.3e-10 Score=69.24 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 041800 12 WVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDT 78 (223)
Q Consensus 12 ~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~ 78 (223)
+.||+|.++.++|+..|+||+.+...-. ..+|. |++|+|+++|+.+.||..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~-------~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNP-------WRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCC-------CCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 5779999999999999999987754321 23677 89999999999999999999999865
No 104
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.97 E-value=3e-09 Score=67.12 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=58.1
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC-CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS-NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILE 73 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~ 73 (223)
+++||+.+.||+|++++.+|..+||+|+.+.+... ...+++.++++. +++|++..||..+.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 68999999999999999999999999999988754 235678888997 799999999998887665543
No 105
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.96 E-value=1.5e-09 Score=75.89 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhh-hhhcCccccCcccchHHHHHHHHHh
Q 041800 120 EKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPIS-HEVLGVEVITQEKFPVLLKWIGKLQ 192 (223)
Q Consensus 120 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~ 192 (223)
..++..+...+.++.|++.|++++||+|++||.+|+++++.+..+... .+..+...+ ...+|+|.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHhcC
Confidence 456778888999999999999999999999999999999998777421 111122211 268999999999973
No 106
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.89 E-value=1.8e-08 Score=67.32 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHH
Q 041800 118 GKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKL 191 (223)
Q Consensus 118 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 191 (223)
++..+...+.+.+.|..+|++|++++| +++|+|||++++.+.+.... ..+..+ .+++|+|.+|++||
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~--~~~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFR--HPDLDW--RAAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhH--ccCcch--hhhChHHHHHHHhC
Confidence 334566788899999999999998888 89999999999999887422 113333 37899999999986
No 107
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.89 E-value=1.2e-08 Score=72.34 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=67.1
Q ss_pred eeeeehHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc-CC
Q 041800 63 KSIVESLIILEYIDDTWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENEL-NG 141 (223)
Q Consensus 63 ~~l~es~~I~~yl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L-~~ 141 (223)
....|+..-..|+..... ++ ..++.. ..+.....+-.+....-......+...+.+...++.+-+.+ ++
T Consensus 29 rt~~ea~~~f~yi~~~~~----f~--~~er~~----~~~~Ga~aM~~isk~lkk~~~i~~D~r~~L~~a~~~w~~~~~~~ 98 (149)
T cd03197 29 RTWSEALASFDYITPSGY----FG--YWEKFF----AKYVGAAAMYLISKYLKKPRLLQDDVREWLYDALNTWVAALGKD 98 (149)
T ss_pred CCHHHHHHhhhhHhcCCC----cc--HHHHHH----HHHhhHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHhcCC
Confidence 445777777888875532 22 122222 22222222222222221111111233444555554444445 45
Q ss_pred CCccccCCCCHhHHHHHHHHhHhhhhhhhcCc-cccCcccchHHHHHHHHHhh
Q 041800 142 KDFFGGEAIGLVDIVATVVAFWFPISHEVLGV-EVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 142 ~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~~~ 193 (223)
++|++|++||+||+++++.+..+. ...++ ++ .++|+|.+|++||.+
T Consensus 99 ~~FlaGd~ptIADisvyg~l~s~e---~~~~~~Dl---~~~p~I~~W~eRm~~ 145 (149)
T cd03197 99 RQFHGGSKPNLADLAVYGVLRSVE---GHPAFKDM---VEETKIGEWYERMDA 145 (149)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHH---Hhccccch---hhCcCHHHHHHHHHH
Confidence 689999999999999999987774 33244 55 689999999999986
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.89 E-value=7.1e-09 Score=66.60 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=49.2
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeee
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIV 66 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 66 (223)
+++||+.+.||+|.+++-+|..+||+|+.+.++-.....+....++. .+||+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 58999999999999999999999999999988854322233344676 79999998886654
No 109
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.87 E-value=4.7e-08 Score=65.33 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHhhhhhhHHHHH-----hhhc--chhhHHHHHHHHHHHHHHHHHhcCC-CCccccCCCCHhHHHHHH
Q 041800 88 DPHQRAVARFWAKFIDEKLLATGMK-----ASLA--EGKEKELLNEEILEQMKLLENELNG-KDFFGGEAIGLVDIVATV 159 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~ 159 (223)
|..+|+.++.+..|+.+.+++.=.. .|.. ...-.+.....+.+.+...+..|+. ++||+|+ .|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 4568999999999999887764221 1222 2334566777888888999999975 7899995 9999999999
Q ss_pred HHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCC
Q 041800 160 VAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRP 202 (223)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 202 (223)
++.++... |.++ .+.+.+|.++..++|++++.+.
T Consensus 80 ml~Rl~~~----gd~v-----P~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 80 MLNRLVTY----GDPV-----PERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHc----CCCC-----CHHHHHHHHHHHCCHHHHHHHH
Confidence 99998432 5333 6899999999999999998643
No 110
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.86 E-value=1.4e-08 Score=63.33 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=59.2
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEY 74 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~y 74 (223)
++++|+.+.||+|++++.+|..++++|+.+.+.... ...++.++++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988886543 34667778887 7999999999999999887654
No 111
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.85 E-value=1.1e-08 Score=72.66 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhh-hcCccccCcccchHHHHHHHHHhh
Q 041800 120 EKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHE-VLGVEVITQEKFPVLLKWIGKLQE 193 (223)
Q Consensus 120 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~~ 193 (223)
..+...+...+.++.|++.|++++||+|++||.+|+++++.+..+..... ....... ...+|+|.+|++||.+
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~-~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNH-LKQCPNLCRFCDRILS 134 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHH-HHHCcHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999998876642111 0010010 2689999999999985
No 112
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.78 E-value=4e-08 Score=62.16 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=57.0
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC-CCChhhhhcCCCCC-cccEEEeCCeeeeehHHHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS-NKSPELLKYNPIHK-KIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~-~~~~~~~~~~p~~~-~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
+++||+.+.||+|.+++-+|...||+|+.+.++.. +...++...... . ++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHHh
Confidence 47999999999999999999999999999988754 122334444443 3 89999999999999888887653
No 113
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.74 E-value=4.3e-08 Score=61.50 Aligned_cols=70 Identities=29% Similarity=0.374 Sum_probs=55.1
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeee--eehHHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSI--VESLIILEYI 75 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l--~es~~I~~yl 75 (223)
+++||+.+.||+|++++.+|...|++|..+.++-.. ...++.+.++. .++|+++.+|..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 379999999999999999999999999988776432 23456677887 7999999888777 4555665554
No 114
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.72 E-value=4.6e-08 Score=61.26 Aligned_cols=62 Identities=29% Similarity=0.464 Sum_probs=52.4
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeee
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVE 67 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~e 67 (223)
.+++|+.++||+|.+++.+|...|++|+.+.++... ..+++.+.+|. +++|+++.+|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEec
Confidence 378999999999999999999999999998887542 34567788897 899999998877654
No 115
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.66 E-value=1.1e-07 Score=60.82 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=58.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDD 77 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~ 77 (223)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ...++.+.+.. .++|++..+|..+.+...+.++.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887542 33556666665 6899999999999888888776654
No 116
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2e-07 Score=59.71 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=54.7
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC--CChhhhhc-CCCCCcccEEEeCCeeeeehHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN--KSPELLKY-NPIHKKIPVLVHNGKSIVESLIILEY 74 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~--~~~~~~~~-~p~~~~vP~L~~~g~~l~es~~I~~y 74 (223)
.+++|+.+.||||.++.-+|..+|++|+.+.++... ...+..+. ++. .+||+++.||..+......-.+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999988765 34344444 476 7999999999777654444443
No 117
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.63 E-value=1.1e-07 Score=59.76 Aligned_cols=57 Identities=23% Similarity=0.429 Sum_probs=44.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCe
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGK 63 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 63 (223)
++||+.+.||+|++++-+|..+||+|+.+.++-.....+.....+. .+||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999988754323233333465 68999998654
No 118
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.59 E-value=5.9e-07 Score=60.01 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=57.6
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCCh----hhhhcCCCCCcccEEEeCCeeeeehHHHHHH
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSP----ELLKYNPIHKKIPVLVHNGKSIVESLIILEY 74 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~g~~l~es~~I~~y 74 (223)
.++++|+.++||||.+++-+|...|++|+.+.++..+... .+...+.. .++|.+..+|..+.+...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 5799999999999999999999999999999988543222 34455665 6999999999999888777664
No 119
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.56 E-value=3.7e-07 Score=57.87 Aligned_cols=70 Identities=13% Similarity=0.318 Sum_probs=53.1
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCC-ChhhhhcC-CCCCcccEEE-eCCeeeeeh--HHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNK-SPELLKYN-PIHKKIPVLV-HNGKSIVES--LIILEYI 75 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~-p~~~~vP~L~-~~g~~l~es--~~I~~yl 75 (223)
.++||+.++||+|++++-+|...|++|+.+.++-... ...+..+| +. .++|+++ ++|.++.++ ..+..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 3799999999999999999999999999877764432 34555666 76 7999997 577777643 4455444
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.54 E-value=1e-07 Score=57.62 Aligned_cols=59 Identities=27% Similarity=0.490 Sum_probs=49.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC-CCChhhhhcCCCCCcccEEEeCCeee
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS-NKSPELLKYNPIHKKIPVLVHNGKSI 65 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l 65 (223)
+++|+.+.||+|.+++-+|...|++|+.+.++-. ...+++.+.+.. .++|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5899999999999999999999999999999865 344556666554 6899999988764
No 121
>PHA03050 glutaredoxin; Provisional
Probab=98.54 E-value=7.6e-07 Score=60.36 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=57.7
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCC---CceEEecCCCCC----ChhhhhcCCCCCcccEEEeCCeeeeehHHHHH
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGV---PFEYIGVDLSNK----SPELLKYNPIHKKIPVLVHNGKSIVESLIILE 73 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i---~~~~~~v~~~~~----~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~ 73 (223)
+++++|+.++||||.+++-+|...|+ +|+.+.++-... ..++.+.+.. .+||.+..+|..+.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 57999999999999999999999999 788888875322 3556777776 699999999999888776665
No 122
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.53 E-value=5.8e-07 Score=58.35 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=60.4
Q ss_pred cEEEEecCCCcHHHHHHHHHHH-----cCCCceEEecCCCC-CChhhhhcCCC-CCcccEEEeCCeeeeehHHHHHHHHh
Q 041800 5 EVKLYGTWVSPFSRRIELALKL-----KGVPFEYIGVDLSN-KSPELLKYNPI-HKKIPVLVHNGKSIVESLIILEYIDD 77 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~-----~~i~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~L~~~g~~l~es~~I~~yl~~ 77 (223)
.+++|+.+.||+|.+++-+|.. .|++|+.+.++-.. ..+++...... +.+||++..||..+.+...|..++..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 4999999999999999999999 89999988887432 12334433321 13799999999999999999999988
Q ss_pred hCC
Q 041800 78 TWK 80 (223)
Q Consensus 78 ~~~ 80 (223)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 764
No 123
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.53 E-value=8.2e-07 Score=57.06 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=60.4
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCC----hhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKS----PELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDD 77 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~----~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~ 77 (223)
++++|+.+.||+|.+++-+|...+++|+...++..+.. ..+.+.+.. .++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 37899999999999999999999999999988865432 235566665 6899999999999999999988754
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.46 E-value=1.2e-06 Score=56.89 Aligned_cols=75 Identities=15% Similarity=0.257 Sum_probs=57.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcC-----CCceEEecCCCC-CChhhhhcCCC-CCcccEEEeCCeeeeehHHHHHHHHhh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKG-----VPFEYIGVDLSN-KSPELLKYNPI-HKKIPVLVHNGKSIVESLIILEYIDDT 78 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~-----i~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~L~~~g~~l~es~~I~~yl~~~ 78 (223)
+++|+.+.||+|.+++-+|...+ ++|+.+.++... ..+++...... ..+||++..||..+.++..|..++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 68999999999999999999985 567776665322 12334443321 037999999999999999999999887
Q ss_pred CC
Q 041800 79 WK 80 (223)
Q Consensus 79 ~~ 80 (223)
+.
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 54
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.31 E-value=4.2e-06 Score=55.65 Aligned_cols=71 Identities=31% Similarity=0.356 Sum_probs=56.0
Q ss_pred CcEEEEec-----CCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 041800 4 EEVKLYGT-----WVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYI 75 (223)
Q Consensus 4 ~~~~Ly~~-----~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl 75 (223)
.++.+|.. +.||||.+++-+|..+||+|+.+.++-.. ...++.+.+.. .++|.+..+|..+.+...+....
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 57889965 88999999999999999999988775321 22345556766 69999999999988877776644
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.28 E-value=7.6e-06 Score=52.68 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=57.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCC--ceEEecCCCCCCh----hhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVP--FEYIGVDLSNKSP----ELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDD 77 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~--~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~ 77 (223)
+++|+.++||+|.+++-+|...+++ |+...++..+... .+.+.... .++|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888887654332 24455555 5899999999999999888887653
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.24 E-value=7.6e-06 Score=53.66 Aligned_cols=71 Identities=24% Similarity=0.249 Sum_probs=56.9
Q ss_pred CcEEEEec-----CCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 041800 4 EEVKLYGT-----WVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYI 75 (223)
Q Consensus 4 ~~~~Ly~~-----~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl 75 (223)
.++++|.. +.||||.+++-+|...|++|+.+.+.... ...++.+.+.. .++|.+..+|..+.+...+....
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 46888865 69999999999999999999999886442 22445566665 69999999999998888877754
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.08 E-value=2.4e-05 Score=48.82 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHcCCC---ceEEecCCCCCChhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHH
Q 041800 12 WVSPFSRRIELALKLKGVP---FEYIGVDLSNKSPELLKYNPIHKKIPVLVH-NGKSIVESLIILEYI 75 (223)
Q Consensus 12 ~~s~~~~~v~~~l~~~~i~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~es~~I~~yl 75 (223)
..+|-|.++.++|+..+.+ |+.+..+- ++ .+|. |++|+|.+ ++..+.+-..|++||
T Consensus 12 sid~ecLa~~~yl~~~~~~~~~~~vv~s~n----~~---~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGAPEQQFKVVPSNN----PW---LSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred ccCHHHHHHHHHHHhCCCCCceEEEEEcCC----CC---cCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 4789999999999999999 77666552 22 4787 89999999 899999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.97 E-value=3.4e-05 Score=64.71 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=54.2
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhh-h--------cCCCCCcccEEEeCCeeeeehHHHHH
Q 041800 3 EEEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELL-K--------YNPIHKKIPVLVHNGKSIVESLIILE 73 (223)
Q Consensus 3 ~~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~-~--------~~p~~~~vP~L~~~g~~l~es~~I~~ 73 (223)
|.++++|+.+.||+|.++.-+|...||+|+.+.++-.....++. . .+.. .+||++..||..+.+-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 34899999999999999999999999999999887433222221 1 2344 589999999998887766655
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.87 E-value=8.4e-05 Score=53.10 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=56.1
Q ss_pred cEEEEecC------CCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCC----CCCcccEEEeCCeeeeehHHHHH
Q 041800 5 EVKLYGTW------VSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNP----IHKKIPVLVHNGKSIVESLIILE 73 (223)
Q Consensus 5 ~~~Ly~~~------~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p----~~~~vP~L~~~g~~l~es~~I~~ 73 (223)
+++||+.+ .+|+|.+++-+|..++|+|+.+.|++.. ..+++.+... . .++|.+..+|..|.+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 37899999 8999999999999999999999988652 2344544422 2 589999999999998877777
Q ss_pred HH
Q 041800 74 YI 75 (223)
Q Consensus 74 yl 75 (223)
.-
T Consensus 80 L~ 81 (147)
T cd03031 80 LN 81 (147)
T ss_pred HH
Confidence 43
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.81 E-value=0.00013 Score=49.78 Aligned_cols=71 Identities=25% Similarity=0.311 Sum_probs=56.7
Q ss_pred CcEEEEec-----CCCcHHHHHHHHHHHcCCCceEEecCCC-CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 041800 4 EEVKLYGT-----WVSPFSRRIELALKLKGVPFEYIGVDLS-NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYI 75 (223)
Q Consensus 4 ~~~~Ly~~-----~~s~~~~~v~~~l~~~~i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl 75 (223)
.++.+|.- +.||||.++.-+|...|++|+.+.++-. .....+.+.+.. .+||-+..+|..+.+...+....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 46888876 5999999999999999999998877643 223445666766 79999999999999887777744
No 132
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.68 E-value=0.00029 Score=49.25 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhh
Q 041800 121 KELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVV 197 (223)
Q Consensus 121 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 197 (223)
.....++++..|..||..+.......| ++|+.||.+++.|+.+ .-..|..+ -|+|.+|+++|.+...+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~L---tivkgi~~-----P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSL---TIVKGIQW-----PPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHH---CTCTTS--------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhh---hhccCCcC-----CHHHHHHHHHHHHHcCC
Confidence 356678889999999999985544444 8999999999999887 34446555 79999999999986544
No 133
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=4.1e-05 Score=64.34 Aligned_cols=112 Identities=13% Similarity=0.227 Sum_probs=78.6
Q ss_pred ccEEEeCCeeeeehHHHHHHHHhhC-CCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHH
Q 041800 55 IPVLVHNGKSIVESLIILEYIDDTW-KNNPILPRDPHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMK 133 (223)
Q Consensus 55 vP~L~~~g~~l~es~~I~~yl~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (223)
++....+|..+.++..+..|..+.. +.+.+++.+ .++.+++.|+++.... ....+...+.
T Consensus 38 ~~~~~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~------------------~~~~~s~~~~ 98 (712)
T KOG1147|consen 38 VDKQFLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF------------------SFDEISSSLS 98 (712)
T ss_pred hhhhccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc------------------chHHHHHHHH
Confidence 3333344566666777777766443 334588877 7899999999988651 2456677888
Q ss_pred HHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHH
Q 041800 134 LLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIG 189 (223)
Q Consensus 134 ~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~ 189 (223)
.|+.+|.-..||+|.++|+||+++|+.++.-....+. ... ...+-++.+|+.
T Consensus 99 ~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~--lk~--~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 99 ELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQ--LKA--KKDYQNVERWYD 150 (712)
T ss_pred HHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHH--HHh--hCCchhhhhhcC
Confidence 8999998889999999999999999988753111111 111 246778999987
No 134
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00087 Score=44.87 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=58.9
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChh----hhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPE----LLKYNPIHKKIPVLVHNGKSIVESLIILEYI 75 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~----~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl 75 (223)
.++++|+-+.||||.++.-.|...++++..+++|-.....+ +.++... .+||.+..+|..+.+...+..+-
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 57999999999999999999999999999999987644433 3344555 69999999999998888887764
No 135
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.39 E-value=0.001 Score=46.11 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhh
Q 041800 122 ELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVV 197 (223)
Q Consensus 122 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 197 (223)
....++++..|+.++..+..... .++.+|+.||.++++|+.+ ....|..+ -|+|.+|+++|.+...+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~L---t~vkgi~~-----P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNL---TLVKGLVF-----PPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhh---hhhcCCCC-----CHHHHHHHHHHHHHhCC
Confidence 45678888899999999954333 4568999999999999887 34446555 68999999999986544
No 136
>PTZ00062 glutaredoxin; Provisional
Probab=97.30 E-value=0.0012 Score=49.84 Aligned_cols=71 Identities=25% Similarity=0.236 Sum_probs=55.3
Q ss_pred CcEEEEec-----CCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 041800 4 EEVKLYGT-----WVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYI 75 (223)
Q Consensus 4 ~~~~Ly~~-----~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl 75 (223)
.++.||.- |.||||+++.-+|...||+|+...+.-+. ....+.+.+.. .++|.+..+|..+.+...+.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 46888855 68999999999999999999988876432 22445566665 68999999999988877776633
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.27 E-value=0.0012 Score=40.32 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=39.9
Q ss_pred cEEEEecCCCcHHHHHHHHHHHc-----CCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeee
Q 041800 5 EVKLYGTWVSPFSRRIELALKLK-----GVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIV 66 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~-----~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 66 (223)
++++|+.++||+|.+++-+|... +++|....++ + .+++...... .++|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~-~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--E-FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--c-CHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999998888765 4555544443 2 2333333333 47999998887654
No 138
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0023 Score=39.36 Aligned_cols=61 Identities=25% Similarity=0.423 Sum_probs=45.6
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC-----------CCChhhhhc--CCCCCcccEEE-eCCeeee
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS-----------NKSPELLKY--NPIHKKIPVLV-HNGKSIV 66 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~-----------~~~~~~~~~--~p~~~~vP~L~-~~g~~l~ 66 (223)
+.+||++..||-|....-.|+-.+++|+.+.+.-. +..++|-+. |.. --+|.|. +||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 66999999999999999999999999999988532 344555433 332 3479886 5676655
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.97 E-value=0.0015 Score=44.56 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=31.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS 39 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~ 39 (223)
++||+.+.||+|++++-+|..+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 5899999999999999999999999999887643
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.91 E-value=0.0024 Score=42.98 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=30.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDL 38 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~ 38 (223)
+++|+.+.||+|++++-+|..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 579999999999999999999999999998753
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.85 E-value=0.0027 Score=44.61 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDL 38 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~ 38 (223)
+++|+.+.|++|++++-+|..+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 799999999999999999999999999988753
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.75 E-value=0.0039 Score=42.73 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=30.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
+++|+.+.|++|++++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 78999999999999999999999999988875
No 143
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.53 E-value=0.0069 Score=42.53 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=30.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDL 38 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~ 38 (223)
+++|+.+.|+.|++++-+|..+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 789999999999999999999999999998753
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.53 E-value=0.0076 Score=42.36 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=30.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDL 38 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~ 38 (223)
+++|+.+.|+.|++++-.|..+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 789999999999999999999999999998763
No 145
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.52 E-value=0.014 Score=37.19 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=41.1
Q ss_pred cEEEEecCCCcHHHHHHHHHHHc--CCCceEEecCCCCCChhhhhcCCCCCcccEEEeCC
Q 041800 5 EVKLYGTWVSPFSRRIELALKLK--GVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNG 62 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~--~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g 62 (223)
+++||+.++|+.|..+.-.|+.. ..+++...+|..+....+.+.+ -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~---~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG---YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC---TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc---CCCCEEEEcC
Confidence 47999999999999999999954 4567777777775455555545 2799999776
No 146
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.51 E-value=0.0079 Score=41.08 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=30.6
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
+++||+.+.|+.|++++-+|..+|++|+.+.+.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 479999999999999999999999999988764
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.50 E-value=0.0043 Score=42.68 Aligned_cols=32 Identities=19% Similarity=0.493 Sum_probs=29.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
+++|+.+.||+|++++-+|..+||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 57999999999999999999999999988875
No 148
>PRK10026 arsenate reductase; Provisional
Probab=96.30 E-value=0.008 Score=42.64 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=31.5
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
..+++|+.+.|.-|++++-.|..+|++|+++.+-
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 3799999999999999999999999999988764
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.24 E-value=0.012 Score=39.61 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=30.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
+++|+.+.|+.|++++-.|..+|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999988775
No 150
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.04 E-value=0.056 Score=35.41 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=49.8
Q ss_pred EEEEecCCCc------HHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcC----CCCCcccEEEeCCeeeeehHHHHH
Q 041800 6 VKLYGTWVSP------FSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYN----PIHKKIPVLVHNGKSIVESLIILE 73 (223)
Q Consensus 6 ~~Ly~~~~s~------~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~L~~~g~~l~es~~I~~ 73 (223)
++||.++.++ .|+.++.+|.-+||+|+.+.|+... ...+..+.. +. .++|-+..++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 6888888665 4568889999999999999998653 233444442 33 589999999999988766555
No 151
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.045 Score=35.92 Aligned_cols=72 Identities=25% Similarity=0.268 Sum_probs=54.0
Q ss_pred CcEEEE-----ecCCCcHHHHHHHHHHHcC-CCceEEecCCC-CCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 4 EEVKLY-----GTWVSPFSRRIELALKLKG-VPFEYIGVDLS-NKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 4 ~~~~Ly-----~~~~s~~~~~v~~~l~~~~-i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
.++.|| .+|-|+|+.++--+|...| ++|..+.|-.+ +-.+.+.+.+-+ -++|=|-.+|..+.+|..|.+...
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHHH
Confidence 467788 4789999999999999999 67776666432 223444455665 789999999999999888777553
No 152
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.92 E-value=0.044 Score=34.42 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=40.8
Q ss_pred EEEEecCCCcHHHHH----HHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeee
Q 041800 6 VKLYGTWVSPFSRRI----ELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIV 66 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v----~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 66 (223)
+.+|+ ++||.|..+ .-++++.|++++...++ ...+..+.+- ..+|++..||..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCC--CcCCEEEECCEEEE
Confidence 67776 999999988 66788889998988887 2333444554 46999998886653
No 153
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.03 Score=38.46 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=30.5
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
++++|+.+.|.-|++++-.|+.+||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 489999999999999999999999999988664
No 154
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.42 E-value=0.052 Score=37.81 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=30.7
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
.+++|+.+.|.-|++++-.|..+||+|+++.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999988764
No 155
>PRK10853 putative reductase; Provisional
Probab=95.36 E-value=0.031 Score=38.50 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=29.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
+++|+.+.|.-|++++-.|+.+|++|+++.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999988764
No 156
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.22 E-value=0.098 Score=32.94 Aligned_cols=57 Identities=16% Similarity=0.322 Sum_probs=39.2
Q ss_pred cEEEEecCCCcHHHHHHHHHHH----cCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCe
Q 041800 5 EVKLYGTWVSPFSRRIELALKL----KGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGK 63 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~----~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 63 (223)
.+++|+.++||+|..+.-.++. .+..+....++..+..+...+ ... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~-~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME-YGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHH-cCC-ccCCEEEECCE
Confidence 4789999999999988877653 354466667776543433333 333 46999987765
No 157
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.98 E-value=0.042 Score=37.44 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=29.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
+++|+.+.|.-|++++-.|..+|++|+++.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988753
No 158
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.84 E-value=0.047 Score=37.32 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=29.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
+++|+.+.|.-|++++-.|..+|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988764
No 159
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.51 E-value=0.16 Score=33.01 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=39.1
Q ss_pred cEEEEecCCCcHHHHHHHHHHHc-----CCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeee
Q 041800 5 EVKLYGTWVSPFSRRIELALKLK-----GVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIV 66 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~-----~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 66 (223)
.+.+|..++|++|..+.-++... ++.+. .++..+..+...+.+= -.+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~--~vd~~~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHE--MIDGALFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEE--EEEhHhCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 58999999999999877766544 44444 4444444444455554 36999998886654
No 160
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.43 E-value=0.24 Score=32.86 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=43.1
Q ss_pred CCCCcEEEEecCCCcH------HHHHHHHHHHcCCCceEEecCCCC-CChhhhhcC---------CCCCcccEEEeCCee
Q 041800 1 MAEEEVKLYGTWVSPF------SRRIELALKLKGVPFEYIGVDLSN-KSPELLKYN---------PIHKKIPVLVHNGKS 64 (223)
Q Consensus 1 M~~~~~~Ly~~~~s~~------~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~---------p~~~~vP~L~~~g~~ 64 (223)
|+ +++|.++.++. .+++..+|..++|+|+.+.+...+ ...+.++.. +. .-.|-+..|+..
T Consensus 1 m~---I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y 76 (99)
T PF04908_consen 1 MV---IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEY 76 (99)
T ss_dssp -S---EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEE
T ss_pred CE---EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEE
Confidence 66 89998887754 458999999999999988887652 222333322 22 234678888888
Q ss_pred eeehHHHHHHH
Q 041800 65 IVESLIILEYI 75 (223)
Q Consensus 65 l~es~~I~~yl 75 (223)
+.+-..+-+..
T Consensus 77 ~Gdye~f~ea~ 87 (99)
T PF04908_consen 77 CGDYEDFEEAN 87 (99)
T ss_dssp EEEHHHHHHHH
T ss_pred EeeHHHHHHHH
Confidence 88766665544
No 161
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.40 E-value=0.14 Score=34.47 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHHHc---CCCceEEecCCCCCChhh-hhcCCCCCcccEEEe-CCe-------------eeeehHHHHHH
Q 041800 13 VSPFSRRIELALKLK---GVPFEYIGVDLSNKSPEL-LKYNPIHKKIPVLVH-NGK-------------SIVESLIILEY 74 (223)
Q Consensus 13 ~s~~~~~v~~~l~~~---~i~~~~~~v~~~~~~~~~-~~~~p~~~~vP~L~~-~g~-------------~l~es~~I~~y 74 (223)
+||.|..+.=+|+.. .-..+.+.|+........ ..++.-++.+|+|+- +|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 578888888777654 223555566655333332 233443478999983 443 78999999999
Q ss_pred HHhhCC
Q 041800 75 IDDTWK 80 (223)
Q Consensus 75 l~~~~~ 80 (223)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999986
No 162
>PHA02125 thioredoxin-like protein
Probab=94.39 E-value=0.22 Score=31.05 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=37.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCe
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGK 63 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 63 (223)
+++|+.++|+.|+.+.-.|+ ++.++...++... ..++.....- ..+|++. +|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEE-CCE
Confidence 78999999999998877775 4567777777544 3444444443 4799998 443
No 163
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.37 E-value=0.11 Score=30.02 Aligned_cols=54 Identities=30% Similarity=0.368 Sum_probs=35.5
Q ss_pred EEEEecCCCcHHHHHHHHHH-----HcCCCceEEecCCCCCChhhhhcCCCCCcccEEEe
Q 041800 6 VKLYGTWVSPFSRRIELALK-----LKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVH 60 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~-----~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 60 (223)
+++|+...|++|++.+-.+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 46788999999999999998 45565555555433222221234555 68999874
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=93.24 E-value=0.27 Score=36.12 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCC---CccccCC-CCHhHHHHHHHHhHh
Q 041800 127 EILEQMKLLENELNGK---DFFGGEA-IGLVDIVATVVAFWF 164 (223)
Q Consensus 127 ~~~~~l~~le~~L~~~---~~l~G~~-~t~aD~~~~~~l~~~ 164 (223)
...+++..|++.|++. .|++|+. +|-+||.+++.|..+
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 3567899999999887 9999987 999999999988765
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.51 E-value=0.77 Score=28.67 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=36.7
Q ss_pred EEEEecCCCcHHHHHHH----HHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeee
Q 041800 6 VKLYGTWVSPFSRRIEL----ALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVE 67 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~----~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~e 67 (223)
+++ ..+.||+|..+.- ++...|++++...+ ...++..+.+= ..+|+++.||.....
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~ygv--~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEKYGV--MSVPALVINGKVVFV 62 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHHTT---SSSSEEEETTEEEEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHHcCC--CCCCEEEECCEEEEE
Confidence 677 5666999995555 45566777766665 23445545454 479999998877543
No 166
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=1.1 Score=34.17 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=55.1
Q ss_pred CcEEEE-----ecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 041800 4 EEVKLY-----GTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 4 ~~~~Ly-----~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
.++.|| ..|.|+|++.+--.|..+|++|+...|--++ -....+..+-+ -++|=|-.+|..+.+...|...+.
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHhh
Confidence 356777 4789999999999999999999988776432 22334555665 789999999999988877776554
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=88.43 E-value=0.64 Score=31.38 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=22.9
Q ss_pred EecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 9 YGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 9 y~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999987764
No 168
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=81.11 E-value=12 Score=24.05 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=43.1
Q ss_pred cEEEEecCCCcHHHHHHHHH-----HHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeeee------ehHHH
Q 041800 5 EVKLYGTWVSPFSRRIELAL-----KLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSIV------ESLII 71 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l-----~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~------es~~I 71 (223)
-+..|+.++|+.|+...-.+ ...+ ++....++......-..+.+- ..+|++. .+|..+. +...|
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v--~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGV--KSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTC--SSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCC--CCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 36777889999999776444 3333 667777776643333334443 5799987 4665542 34556
Q ss_pred HHHHHh
Q 041800 72 LEYIDD 77 (223)
Q Consensus 72 ~~yl~~ 77 (223)
.++|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666654
No 169
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=80.79 E-value=10 Score=24.50 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=35.0
Q ss_pred cEEEEecCCCcHHHHHHHHHHH----cCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeee
Q 041800 5 EVKLYGTWVSPFSRRIELALKL----KGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSI 65 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~----~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 65 (223)
-+.+|+.++|+.|+...-.+.. .+-.+....++......-....+- ..+|++. .+|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v--~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI--MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC--eeccEEEEEECCeEE
Confidence 3667888999999977766643 121345556665433322233343 4689876 467655
No 170
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=78.48 E-value=2.1 Score=32.78 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhh
Q 041800 129 LEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVN 198 (223)
Q Consensus 129 ~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 198 (223)
...+..++..|.+.+|..|.+++-+|+.++..+.-- +. ...+++..+|+..+...-...
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e---------p~--s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE---------PQ--SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC---------cc--hhhhhHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999988755321 11 256788899998887754443
No 171
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=77.71 E-value=14 Score=25.44 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEecCCCcHHHHHHHHH----HHcCCCceEEecC
Q 041800 6 VKLYGTWVSPFSRRIELAL----KLKGVPFEYIGVD 37 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l----~~~~i~~~~~~v~ 37 (223)
+..|+.++||+|+.+.=.| +..++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 5667999999999754444 4455666666655
No 172
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=76.91 E-value=1.9 Score=29.61 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=13.4
Q ss_pred cccEEEe--CCeeeeehHHHHHHHHhhCC
Q 041800 54 KIPVLVH--NGKSIVESLIILEYIDDTWK 80 (223)
Q Consensus 54 ~vP~L~~--~g~~l~es~~I~~yl~~~~~ 80 (223)
.-|.|.+ +|..+.|+.||++|+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 4588854 68999999999999988774
No 173
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.75 E-value=8.3 Score=34.08 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=38.0
Q ss_pred cEEEEecCCCcHHHHHHH----HHHHc-CCCceEEecCCCCCChhhh-hcCCCCCcccEEEeCCeeee
Q 041800 5 EVKLYGTWVSPFSRRIEL----ALKLK-GVPFEYIGVDLSNKSPELL-KYNPIHKKIPVLVHNGKSIV 66 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~----~l~~~-~i~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~~~g~~l~ 66 (223)
.+++|.++.||+|-.+.- ++.+. +|..+.+.+.. . +++. +.+= ..||.++.||.++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--~-~~~~~~~~v--~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--F-PDLKDEYGI--MSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--c-HHHHHhCCc--eecCEEEECCEEEE
Confidence 488999999999986554 34444 67766666553 2 3344 4454 47999998886543
No 174
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=76.05 E-value=16 Score=22.55 Aligned_cols=56 Identities=27% Similarity=0.320 Sum_probs=33.7
Q ss_pred cEEEEecCCCcHHHHHHHHHHH-----cCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCee
Q 041800 5 EVKLYGTWVSPFSRRIELALKL-----KGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKS 64 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~-----~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 64 (223)
-+..|+.+.|+.|+...-.+.. .++.+- .++... ...+.+.-.. ..+|++. .+|..
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~i~~~~-~~~~~~~~~v-~~~P~~~~~~~g~~ 75 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--KVDVDE-NPELAEEYGV-RSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEE--EEECCC-ChhHHHhcCc-ccccEEEEEECCEE
Confidence 3677889999999988777766 555444 444332 2223322223 4689876 46654
No 175
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=74.60 E-value=15 Score=26.01 Aligned_cols=74 Identities=14% Similarity=0.044 Sum_probs=49.3
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEeCCeeee---ehHHHHHHHHhhC
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVHNGKSIV---ESLIILEYIDDTW 79 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~---es~~I~~yl~~~~ 79 (223)
.++.|.+|.|++|..-.-.++.+|+++..+..+-.. -...+--.... +..=+.+.+|..+- --.+|.+.|++..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~-~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEM-QSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhh-ccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 589999999999998888999999888777654221 00000000111 44556677776653 3678999998876
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=72.76 E-value=6.5 Score=34.36 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=44.1
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCC---CceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeee----hHHHHHHHHh
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGV---PFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVE----SLIILEYIDD 77 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~e----s~~I~~yl~~ 77 (223)
.+++|.++.||||-.+.-++...-+ ..+...++....++...+.+= ..||.+..||..+.+ -..+++.+..
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v--~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNI--MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCC--cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 4889999999999976666544322 234444454443333334343 579999987766544 2456666654
Q ss_pred h
Q 041800 78 T 78 (223)
Q Consensus 78 ~ 78 (223)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 177
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=72.50 E-value=24 Score=23.75 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=36.1
Q ss_pred EEEEecCCCcHHHHHHHHHHH-----cCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeeee
Q 041800 6 VKLYGTWVSPFSRRIELALKL-----KGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSIV 66 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~-----~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~ 66 (223)
+..|+.++|+.|+.+.-.+.. .+ .....++... .+++.+...- ..+|++. .+|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEE
Confidence 566788999999977766643 23 3555666554 3334443333 5799987 4787665
No 178
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=6.9 Score=30.92 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=50.6
Q ss_pred CcEEEEecCCCc------HHHHHHHHHHHcCCCceEEecCCCC-CChhhhhc----CCCCCcccEEEeCCeeeeehHHHH
Q 041800 4 EEVKLYGTWVSP------FSRRIELALKLKGVPFEYIGVDLSN-KSPELLKY----NPIHKKIPVLVHNGKSIVESLIIL 72 (223)
Q Consensus 4 ~~~~Ly~~~~s~------~~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~----~p~~~~vP~L~~~g~~l~es~~I~ 72 (223)
+.+++|..+... -|..||.+|+-.+|.|+.+.|.++. ...|+..+ .-. -.+|.+..+|..|.+...|.
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhh
Confidence 357788766332 4779999999999999999999873 33333322 122 57898889999988877776
Q ss_pred HH
Q 041800 73 EY 74 (223)
Q Consensus 73 ~y 74 (223)
+-
T Consensus 210 ~L 211 (281)
T KOG2824|consen 210 RL 211 (281)
T ss_pred hh
Confidence 64
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=70.08 E-value=7.2 Score=34.09 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=44.3
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCC---ceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeee----hHHHHHHHHh
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVP---FEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVE----SLIILEYIDD 77 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~e----s~~I~~yl~~ 77 (223)
.+++|.++.||||-.+.-++....+. ++...++....++...+.+- ..||.+..||..+.+ -..+++.+..
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v--~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGI--QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCC--cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 48899999999999877666544332 33334554444444444443 479999987766544 2344555544
Q ss_pred h
Q 041800 78 T 78 (223)
Q Consensus 78 ~ 78 (223)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 180
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=68.21 E-value=23 Score=26.90 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=33.1
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcC---CCceEEecCCCCCChhhhhcCCCCCcccEEEe
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKG---VPFEYIGVDLSNKSPELLKYNPIHKKIPVLVH 60 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~---i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 60 (223)
.+++|+.++||+|..+.-++...- -......++.........+.+- ..+|++..
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V--~~vPtl~i 192 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGV--MSVPKIVI 192 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCC--ccCCEEEE
Confidence 367789999999998877765432 1233445665543333333343 46999874
No 181
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=67.43 E-value=18 Score=23.58 Aligned_cols=53 Identities=15% Similarity=0.050 Sum_probs=31.0
Q ss_pred cEEEEecCCCcHHHHHHHHH--------HHcCCCceEEecCCCCC---ChhhhhcCCCCCcccEEE
Q 041800 5 EVKLYGTWVSPFSRRIELAL--------KLKGVPFEYIGVDLSNK---SPELLKYNPIHKKIPVLV 59 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l--------~~~~i~~~~~~v~~~~~---~~~~~~~~p~~~~vP~L~ 59 (223)
-+..|+.++|++|+...-.+ ...+ .+....++.... ..++.+.-.. ..+|++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 36678899999999775332 2232 456666665432 2333333333 4689876
No 182
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=66.58 E-value=31 Score=21.96 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=37.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHc----CCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeee
Q 041800 6 VKLYGTWVSPFSRRIELALKLK----GVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSI 65 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~----~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 65 (223)
+..|+.++|+.|++..-.+... +-.+....++......-..+.+.. .+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT--AVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc--cccEEEEEECCEEE
Confidence 5677889999999876666432 335666677765434334455653 589876 467654
No 183
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=65.49 E-value=23 Score=23.84 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=31.5
Q ss_pred EEEE-ecCCCcHHHHHHHHHHHcCCC---ceEEecCCCCCChhhhhcCCCCCcccEEEe
Q 041800 6 VKLY-GTWVSPFSRRIELALKLKGVP---FEYIGVDLSNKSPELLKYNPIHKKIPVLVH 60 (223)
Q Consensus 6 ~~Ly-~~~~s~~~~~v~~~l~~~~i~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 60 (223)
++++ +.++||+|+.++-++....-. .+...++... .+++...-.- ..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEEE
Confidence 4555 567999999887777543321 3444555443 3444444343 57999873
No 184
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=64.70 E-value=39 Score=22.50 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=33.4
Q ss_pred cEEEEecCCCcHHHHHHHHH-----HHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeee
Q 041800 5 EVKLYGTWVSPFSRRIELAL-----KLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSI 65 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l-----~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 65 (223)
-++.|+.++|+.|+...-.+ .+.+..+....++......-..+.+- ..+|++. .+|..+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V--~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA--HSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC--ccCCEEEEEECCEEE
Confidence 36678899999998554332 33333455556665532222223343 5789876 466543
No 185
>PRK09381 trxA thioredoxin; Provisional
Probab=62.65 E-value=41 Score=22.05 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=35.0
Q ss_pred EEEEecCCCcHHHHHHHHHH----HcCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeee
Q 041800 6 VKLYGTWVSPFSRRIELALK----LKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSI 65 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~----~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 65 (223)
+..++.++||.|+...-.++ ..+-.+....++......-....+. ..+|++. .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 56678889999997654442 2222355666666543333344555 4799876 467654
No 186
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=58.33 E-value=41 Score=22.76 Aligned_cols=17 Identities=12% Similarity=0.342 Sum_probs=13.9
Q ss_pred cEEEEecCCCcHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIE 21 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~ 21 (223)
.+..|+.++|++|++..
T Consensus 17 vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 17 LLLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEEeCCCCHHHHHHH
Confidence 46778899999999765
No 187
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=56.72 E-value=19 Score=26.49 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=27.5
Q ss_pred cEEEEecCCCcHHH----HHHHHHHHc-CCCceEEecCCCC
Q 041800 5 EVKLYGTWVSPFSR----RIELALKLK-GVPFEYIGVDLSN 40 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~----~v~~~l~~~-~i~~~~~~v~~~~ 40 (223)
++++|+...||||. +++-+++.. ++.++.+.+.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 37899999999998 444455555 8888888888653
No 188
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=54.00 E-value=16 Score=24.58 Aligned_cols=26 Identities=12% Similarity=0.334 Sum_probs=21.6
Q ss_pred ccEEE-eCCeeeeehHHHHHHHHhhCC
Q 041800 55 IPVLV-HNGKSIVESLIILEYIDDTWK 80 (223)
Q Consensus 55 vP~L~-~~g~~l~es~~I~~yl~~~~~ 80 (223)
+|.+. .+|.++++|..|+++...+|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45555 689999999999999988864
No 189
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=53.95 E-value=53 Score=21.86 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=40.5
Q ss_pred EEecCCCcHHHHHHHHHHHcCCC--ceEEecCCCCCChh---hhhcC---CCCCcccEEEeCCe-eeeehHHHHHHHHhh
Q 041800 8 LYGTWVSPFSRRIELALKLKGVP--FEYIGVDLSNKSPE---LLKYN---PIHKKIPVLVHNGK-SIVESLIILEYIDDT 78 (223)
Q Consensus 8 Ly~~~~s~~~~~v~~~l~~~~i~--~~~~~v~~~~~~~~---~~~~~---p~~~~vP~L~~~g~-~l~es~~I~~yl~~~ 78 (223)
|++...||+|....-.+...+.. ++.+.+. .....+ ...++ .. ..+-+ ..+|. +..++.|+..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQ-SEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECC-ChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 47788899999888888777653 4444442 111111 11122 22 23333 55665 899999999887654
No 190
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=53.93 E-value=21 Score=26.92 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=26.8
Q ss_pred CcEEEEecCCCcHHHH----HHHHHHHcCCCceEEecCCC
Q 041800 4 EEVKLYGTWVSPFSRR----IELALKLKGVPFEYIGVDLS 39 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~----v~~~l~~~~i~~~~~~v~~~ 39 (223)
|.+.+|+...||||.. ++-++...+++++.+++.+.
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L~ 40 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFLG 40 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 4688999999999984 44455667787777777653
No 191
>PHA03075 glutaredoxin-like protein; Provisional
Probab=53.51 E-value=26 Score=23.92 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=47.2
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIVESLIILEYIDDT 78 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~es~~I~~yl~~~ 78 (223)
+.++|++-|.|+-|+.+.-+|....-+|+...|+....- +.. |++-+|..++..- =-..+.+|+...
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfF------sK~-g~v~~lg~d~~y~-lInn~~~~lgne 69 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFF------SKD-GQVKVLGMDKGYT-LINNFFKHLGNE 69 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeee------ccC-CceEEEeccccee-hHHHHHHhhccc
Confidence 569999999999999999999998889999988754211 112 6788887543221 123566666543
No 192
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.35 E-value=1.2e+02 Score=24.57 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=50.6
Q ss_pred CcEEEEecCCCcHHHHHHHHH----HHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeeeee------hHHH
Q 041800 4 EEVKLYGTWVSPFSRRIELAL----KLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSIVE------SLII 71 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l----~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~e------s~~I 71 (223)
|-+.+|+.|.|+-|....=.| ++.+=.|....|+.+..+.--...+. ..||+.. .+|.+|.+ -..|
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi--qsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV--QSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc--CcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 457888999999998554443 44455688888887753333334455 5799976 57776643 3468
Q ss_pred HHHHHhhCC
Q 041800 72 LEYIDDTWK 80 (223)
Q Consensus 72 ~~yl~~~~~ 80 (223)
-++|++..+
T Consensus 123 r~~ld~~~~ 131 (304)
T COG3118 123 RQFLDKVLP 131 (304)
T ss_pred HHHHHHhcC
Confidence 888888765
No 193
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=51.26 E-value=1.2e+02 Score=23.88 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=41.8
Q ss_pred ehHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 041800 67 ESLIILEYIDDTWKNNPILPRDPHQRAVARFWAKFIDEKLLATGMKASLAEGKEKELLNEEILEQMKLLENEL 139 (223)
Q Consensus 67 es~~I~~yl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 139 (223)
|-..|-..+.|... ...-|+|+...++|...+...-...+..+-..+ ..+.+++++...++.||.+|
T Consensus 5 E~qLI~~lf~RL~~-ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vl-----vQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 5 ERQLIDDLFSRLKQ-AEAQPRDPEAEALIAQALARQPDAPYYLAQTVL-----VQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666542 223488888888877766654443332222222 35678888888999999997
No 194
>PF13728 TraF: F plasmid transfer operon protein
Probab=49.80 E-value=61 Score=24.78 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=35.1
Q ss_pred cEEEEecCCCcHHH----HHHHHHHHcCCCceEEecCCC---------CCChhhhhcCCCCCcccEEE
Q 041800 5 EVKLYGTWVSPFSR----RIELALKLKGVPFEYIGVDLS---------NKSPELLKYNPIHKKIPVLV 59 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~----~v~~~l~~~~i~~~~~~v~~~---------~~~~~~~~~~p~~~~vP~L~ 59 (223)
.+.+++.+.||+|+ .++.+....|+++..+-+|.. ....-...++. ..+|+|.
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 47788889999998 566667777888777766522 11222334555 3789976
No 195
>PTZ00051 thioredoxin; Provisional
Probab=48.30 E-value=69 Score=20.31 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=32.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHc---CCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeee
Q 041800 6 VKLYGTWVSPFSRRIELALKLK---GVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSI 65 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~---~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 65 (223)
+..|+.++|+.|+...-.+... .-.+....++......-..+.+- ..+|++. .+|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI--TSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC--ceeeEEEEEeCCeEE
Confidence 5677899999999775555432 12244445554432222233344 4689876 366554
No 196
>PRK10996 thioredoxin 2; Provisional
Probab=47.33 E-value=96 Score=21.65 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=35.3
Q ss_pred EEEEecCCCcHHHHHHHHHHH----cCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeee
Q 041800 6 VKLYGTWVSPFSRRIELALKL----KGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSI 65 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~----~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 65 (223)
+..|+.++|+.|+...-.+.. .+-.+....++......-..+.+- ..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V--~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI--RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC--CccCEEEEEECCEEE
Confidence 667788999999965444422 233456666676543333334454 4699976 477654
No 197
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=45.72 E-value=1.1e+02 Score=21.94 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=34.8
Q ss_pred EEEEecCCCcHHHHHHHHHH-----HcCCCceEEecCCCCCChhhhhcCCCC----CcccEEE--eCCeeee
Q 041800 6 VKLYGTWVSPFSRRIELALK-----LKGVPFEYIGVDLSNKSPELLKYNPIH----KKIPVLV--HNGKSIV 66 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~-----~~~i~~~~~~v~~~~~~~~~~~~~p~~----~~vP~L~--~~g~~l~ 66 (223)
+..|+.++|+.|+...-.++ ..+-.++...|+.+....--.+.+-.. +++|++. .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 67788899999996654442 222335666677654322222223220 2389986 5787765
No 198
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=45.66 E-value=93 Score=21.02 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=32.7
Q ss_pred EEEEecCCCcHHHHHHHHHHH------cCCCceEEecCCCCCChhhhhcCCCCCcccEEE--e-CCeeee
Q 041800 6 VKLYGTWVSPFSRRIELALKL------KGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--H-NGKSIV 66 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~------~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~-~g~~l~ 66 (223)
+.-|+.++|++|+...-.+.. .+..|..+.++-.. .+.....+..++.+|++. + +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCch
Confidence 566788999999977554443 22344444444322 111233455422489976 3 566644
No 199
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=45.56 E-value=81 Score=20.27 Aligned_cols=56 Identities=7% Similarity=-0.055 Sum_probs=31.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHc----CCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCe
Q 041800 6 VKLYGTWVSPFSRRIELALKLK----GVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGK 63 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~----~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 63 (223)
+..|+.++|+.|+...-.+... +-.+....++..+...-..+.+- ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV--NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC--CccCEEEEEcCCC
Confidence 6677889999999655444222 11255556676543322233343 4789985 3554
No 200
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=44.39 E-value=91 Score=23.62 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=32.8
Q ss_pred cEEEEec---CCCcHHHHHHHHHHHc-----CCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCee
Q 041800 5 EVKLYGT---WVSPFSRRIELALKLK-----GVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKS 64 (223)
Q Consensus 5 ~~~Ly~~---~~s~~~~~v~~~l~~~-----~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 64 (223)
.+.+|+. ++||.|+.+.=.++.. ++.+....++.+. ..+.....-- ..+|++. .+|..
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V-~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGV-ERVPTTIILEEGKD 89 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCC-CccCEEEEEeCCee
Confidence 3667777 8899999777666444 2334444454433 3333332333 4689986 35543
No 201
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=43.77 E-value=88 Score=20.76 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=33.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCC---CceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeeeeeh
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGV---PFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSIVES 68 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~es 68 (223)
+..|+.++|+.|+.+.-.++..-- ......++.... .+.+.--- ..+|++. .+|..+...
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEEE
Confidence 556788999999966655532111 134445555432 33332222 4789987 478776543
No 202
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=41.86 E-value=88 Score=19.65 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=33.3
Q ss_pred EEEEecCCCcHHHHHHHHHHH----cCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCee
Q 041800 6 VKLYGTWVSPFSRRIELALKL----KGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKS 64 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~----~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 64 (223)
+..++.++|+.|+...-.+.. .+-.+....++......-..+.+- ..+|++. .+|..
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLLFKNGKE 80 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEEEeCCcE
Confidence 566678889999976544432 232355566665543333344454 3689876 35543
No 203
>PHA02278 thioredoxin-like protein
Probab=41.64 E-value=1e+02 Score=20.36 Aligned_cols=59 Identities=8% Similarity=0.179 Sum_probs=32.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHc----CCCceEEecCCCCC---Chhhh-hcCCCCCcccEEE--eCCeeee
Q 041800 6 VKLYGTWVSPFSRRIELALKLK----GVPFEYIGVDLSNK---SPELL-KYNPIHKKIPVLV--HNGKSIV 66 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~----~i~~~~~~v~~~~~---~~~~~-~~~p~~~~vP~L~--~~g~~l~ 66 (223)
+.-|+.++|+.|+...=.+... +.......++.+.. .+++. +.+- ..+|++. .+|..+.
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I--~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI--MSTPVLIGYKDGQLVK 86 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC--ccccEEEEEECCEEEE
Confidence 5556888999999666444222 22233444444422 13333 3444 4689987 4776653
No 204
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=41.38 E-value=38 Score=25.22 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.6
Q ss_pred cEEEEecCCCcHHHHHHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKL 26 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~ 26 (223)
.+.+|+.+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4778899999999998877764
No 205
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=40.86 E-value=35 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=14.6
Q ss_pred cEEEEecCCCcHHHHHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALK 25 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~ 25 (223)
.+.+|+.+.||+|++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 467788999999998765554
No 206
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=40.61 E-value=33 Score=20.47 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=21.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecCCC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLS 39 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~ 39 (223)
.+||++....-+..++-.|+..||++....-...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~ 34 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMS 34 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccc
Confidence 3688888888899999999999999987765543
No 207
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=40.59 E-value=1.1e+02 Score=20.19 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=31.0
Q ss_pred cEEEEecCCCcHHHHHHHHH-----HHcCCCceEEecCCCCCChhhh-hcCCCCCcccEEE
Q 041800 5 EVKLYGTWVSPFSRRIELAL-----KLKGVPFEYIGVDLSNKSPELL-KYNPIHKKIPVLV 59 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l-----~~~~i~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 59 (223)
-+..|+.++|+.|+...-.+ .+.+..+....++.+.....+. +.... ..+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 47788999999999664433 2333345555666543222222 22333 5689876
No 208
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=39.42 E-value=67 Score=21.36 Aligned_cols=32 Identities=25% Similarity=0.090 Sum_probs=26.7
Q ss_pred CcEEEEecCCCcHHHHHHHHHHHcCCCceEEe
Q 041800 4 EEVKLYGTWVSPFSRRIELALKLKGVPFEYIG 35 (223)
Q Consensus 4 ~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~ 35 (223)
|.-.|......|...-++.+++++|||++...
T Consensus 56 P~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 56 PWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred CCEEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 45677778888999999999999999988664
No 209
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=38.60 E-value=1.1e+02 Score=19.83 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=31.8
Q ss_pred EEEEecCCCcHHHHHHHHHHH----cC-CCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeee
Q 041800 6 VKLYGTWVSPFSRRIELALKL----KG-VPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSI 65 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~----~~-i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 65 (223)
+..|+.++|+.|+...-.+.. .+ -.+....++.+ ..+...+.+- ..+|++. .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v--~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG--KCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC--CcCcEEEEEECCEEE
Confidence 567788999999966544432 12 12344455544 2233334443 4689875 467654
No 210
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=38.20 E-value=97 Score=19.11 Aligned_cols=36 Identities=17% Similarity=0.502 Sum_probs=21.8
Q ss_pred ehHHHHHHHHhhCCC--CCCCCCCHHHHHHHHHHHHHhhh
Q 041800 67 ESLIILEYIDDTWKN--NPILPRDPHQRAVARFWAKFIDE 104 (223)
Q Consensus 67 es~~I~~yl~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~ 104 (223)
|..-|+.++..-||+ ..+.+.+ .+..++.|.+...+
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~--~k~~v~~W~~~L~d 42 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTD--SKETVDLWYDMLKD 42 (71)
T ss_dssp HHHHHHHHHHHHST---TT---ST--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcchhccchhh--HHHHHHHHHHHHHh
Confidence 566788899999883 2344444 24567777776654
No 211
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=37.85 E-value=20 Score=24.67 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=26.2
Q ss_pred cCCCcHHHHHHH----HHHHcCCCceEEecCCCCC------ChhhhhcCC---CCCcccEEEe--CCeeeeeh
Q 041800 11 TWVSPFSRRIEL----ALKLKGVPFEYIGVDLSNK------SPELLKYNP---IHKKIPVLVH--NGKSIVES 68 (223)
Q Consensus 11 ~~~s~~~~~v~~----~l~~~~i~~~~~~v~~~~~------~~~~~~~~p---~~~~vP~L~~--~g~~l~es 68 (223)
.++||.|+.+.- ++....-....+.+..+++ ...|++ +| . ..||+|.. ++.-|.|.
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~-~p~~~l-~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT-DPDLKL-KGIPTLIRWETGERLVEE 105 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH---CC----SSSEEEECTSS-EEEHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE-cceeee-eecceEEEECCCCccchh
Confidence 458999997664 3444323455555554432 223433 22 2 35899983 44555543
No 212
>COG4365 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.75 E-value=1.7e+02 Score=25.05 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=43.0
Q ss_pred cCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHhhhcc
Q 041800 147 GEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEIDVVNQSRPPREKHVAHVRARMEGLNS 220 (223)
Q Consensus 147 G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (223)
++.-|++|++..-+...+ .+ .|.-+++ ..+|.|++... |.|++.++........+..-.+++.+
T Consensus 204 ~e~~sytD~Fa~Llh~lf---~~-eGllvld-s~~p~lrkLea-----pmf~kiL~k~~~l~~af~dqq~rl~q 267 (537)
T COG4365 204 AESHSYTDFFARLLHGLF---AP-EGLLVLD-SGDPALRKLEA-----PMFAKILEKPLALSAAFEDQQERLSQ 267 (537)
T ss_pred hhcccHHHHHHHHHHHhh---hh-cceEEec-CCChHHHHHHH-----HHHHHHHhhhHhHHHHHHHHHHHHHh
Confidence 467899999776544444 22 2666654 78999998754 55557777777777777666666554
No 213
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=37.63 E-value=58 Score=22.04 Aligned_cols=39 Identities=13% Similarity=-0.046 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHH
Q 041800 118 GKEKELLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATV 159 (223)
Q Consensus 118 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 159 (223)
...+....++...++..||+.|++- | +..+|-.-+.+..
T Consensus 59 ~~~R~~iirE~Daiv~DLeEVLa~V-~--~~~aT~eQ~~Fi~ 97 (113)
T PF12290_consen 59 FSQRFQIIREADAIVYDLEEVLASV-W--NQKATNEQIAFIE 97 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H--cCCCCHHHHHHHH
Confidence 3345666778888899999999741 2 3456666655443
No 214
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=37.60 E-value=1.1e+02 Score=19.35 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=33.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHc----CCCceEEecCCCCCChhhh-hcCCCCCcccEEE--eCCeee
Q 041800 6 VKLYGTWVSPFSRRIELALKLK----GVPFEYIGVDLSNKSPELL-KYNPIHKKIPVLV--HNGKSI 65 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~----~i~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~--~~g~~l 65 (223)
+..|+.++|+.|+...-.+... +-.+....++... ...+. +.+- ..+|+++ .+|..+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i--~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV--QALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC--CCCCEEEEEeCCEEe
Confidence 5667888999999765555432 2235555666654 33333 3344 4689987 566543
No 215
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=36.92 E-value=52 Score=25.82 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=17.1
Q ss_pred cEEEEecCCCcHHHHHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALK 25 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~ 25 (223)
.+.+|+.+.||||++..--+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 377889999999999876654
No 216
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=36.03 E-value=66 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=23.8
Q ss_pred cCCCcHHHHHHHHHHHcCCCceEEecCCCCCCh
Q 041800 11 TWVSPFSRRIELALKLKGVPFEYIGVDLSNKSP 43 (223)
Q Consensus 11 ~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~ 43 (223)
.+.-+.+++++-.|+..|++|+.........++
T Consensus 10 ~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~ 42 (150)
T PF00731_consen 10 TSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPE 42 (150)
T ss_dssp GGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHH
Confidence 345689999999999999999998877654333
No 217
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=34.31 E-value=51 Score=20.45 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=17.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHc
Q 041800 6 VKLYGTWVSPFSRRIELALKLK 27 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~ 27 (223)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4688999999999777766553
No 218
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.71 E-value=63 Score=20.26 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHHHcCCCceEEecCC
Q 041800 14 SPFSRRIELALKLKGVPFEYIGVDL 38 (223)
Q Consensus 14 s~~~~~v~~~l~~~~i~~~~~~v~~ 38 (223)
-+|++|+.-.|+..||+|+..+-..
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCCC
Confidence 3799999999999999999776543
No 219
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.00 E-value=1e+02 Score=18.75 Aligned_cols=32 Identities=22% Similarity=0.145 Sum_probs=26.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCCceEEecC
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVPFEYIGVD 37 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~ 37 (223)
.-+..|+....+.++.-.|...|++++..+++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 34556677778999999999999999988765
No 220
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.97 E-value=69 Score=22.14 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=38.5
Q ss_pred cCCCcHHHHH----HHHHHHcCCCceEEecCCCCCChhhhhcCCCCC-------cccEEEe-C--CeeeeehHHHHHHHH
Q 041800 11 TWVSPFSRRI----ELALKLKGVPFEYIGVDLSNKSPELLKYNPIHK-------KIPVLVH-N--GKSIVESLIILEYID 76 (223)
Q Consensus 11 ~~~s~~~~~v----~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~-------~vP~L~~-~--g~~l~es~~I~~yl~ 76 (223)
-++||.|.++ +=+|++..-....+.++.++.+.|-..-||+ + -||+|.. + +.-+.+...--..|.
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~F-R~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lv 120 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPF-RKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLV 120 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcc-ccCCCceeecceeeEEcCccccchHhHhhHHHHH
Confidence 4579999854 5566767777888888777655554444443 2 3677763 2 344445444444443
No 221
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=32.40 E-value=1.3e+02 Score=19.02 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=30.7
Q ss_pred cEEEEecCCCcHHHHHHHHH----HHcC--CCceEEecCCCCC-Chhhh-hcCCCCCcccEEE--eCCee
Q 041800 5 EVKLYGTWVSPFSRRIELAL----KLKG--VPFEYIGVDLSNK-SPELL-KYNPIHKKIPVLV--HNGKS 64 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l----~~~~--i~~~~~~v~~~~~-~~~~~-~~~p~~~~vP~L~--~~g~~ 64 (223)
-+.+|+.++|+.|+...=.+ .... -.+....++.... ...+. ..+. ..+|+++ .+|..
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i--~~~Pt~~~~~~g~~ 87 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV--KGFPTFKYFENGKF 87 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC--ccccEEEEEeCCCe
Confidence 36778889999999764222 2211 2244444554431 33333 3343 3689876 35543
No 222
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=32.17 E-value=1.4e+02 Score=19.05 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=30.3
Q ss_pred cEEEEecCCCcHHHHHHHHHH-----HcCCCceEEecCCCCCChhhh-hcCCCCCcccEEE
Q 041800 5 EVKLYGTWVSPFSRRIELALK-----LKGVPFEYIGVDLSNKSPELL-KYNPIHKKIPVLV 59 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~-----~~~i~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 59 (223)
-+..|+.++|+.|+...=.+. ..+..+....++..+ .+.+. +.+- ..+|++.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i--~~~Pt~~ 76 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV--TALPTIY 76 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC--cccCEEE
Confidence 366788899999986553332 223345555666543 33333 3343 4689986
No 223
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=31.67 E-value=57 Score=25.26 Aligned_cols=22 Identities=5% Similarity=0.221 Sum_probs=17.9
Q ss_pred cEEEEecCCCcHHHHHHHHHHH
Q 041800 5 EVKLYGTWVSPFSRRIELALKL 26 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~ 26 (223)
.+++|+.+.||||++..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 4788999999999998766544
No 224
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=30.17 E-value=1.8e+02 Score=19.78 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=34.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCCC----ceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeeee
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGVP----FEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSIV 66 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i~----~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~ 66 (223)
+.-|+.++|+.|+.+.=.+...--. .....|+.+. .+++...--- ..+|++. .+|..+.
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEEEE
Confidence 4447888999999765555332211 3445666554 3444433333 4699987 4776654
No 225
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=29.95 E-value=2.6e+02 Score=24.89 Aligned_cols=84 Identities=23% Similarity=0.212 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCCCc----------cccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHhhch
Q 041800 126 EEILEQMKLLENELNGKDF----------FGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQEID 195 (223)
Q Consensus 126 ~~~~~~l~~le~~L~~~~~----------l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 195 (223)
+.+...++.+.+.++.++| .....-|++|++..-+-..+ ...|.-+++ ...|.|++.. .|
T Consensus 176 ~~~~~~l~~l~~~l~~t~~~~~l~~~l~~a~~~~~tl~d~f~~l~~~LF----~~~GLv~lD-~~~~~lr~l~-----~p 245 (542)
T PF10079_consen 176 EDLEEVLEELFESLPETEFTKELLELLEEAYRESETLADAFARLMHELF----GDYGLVLLD-PDDPELRKLE-----AP 245 (542)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhCCeEEEC-CCCHHHHHHh-----HH
Confidence 4466777777777765443 12456799999777544444 334777665 7889999875 56
Q ss_pred hhhccCCChHHHHHHHHHHHhhhc
Q 041800 196 VVNQSRPPREKHVAHVRARMEGLN 219 (223)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~ 219 (223)
-|++.+....++...+....+++.
T Consensus 246 ~f~~~l~~~~~~~~~v~~~~~~l~ 269 (542)
T PF10079_consen 246 VFKRELEHNEAIQQAVSEQAEKLE 269 (542)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHH
Confidence 666777777766666655555443
No 226
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=29.93 E-value=1.1e+02 Score=19.63 Aligned_cols=52 Identities=12% Similarity=-0.042 Sum_probs=29.9
Q ss_pred cEEEEecCCCcHHHHHHHHHHHc----CCCceEEecCCCCCChhhh-hcCCCCCcccEEE
Q 041800 5 EVKLYGTWVSPFSRRIELALKLK----GVPFEYIGVDLSNKSPELL-KYNPIHKKIPVLV 59 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~----~i~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 59 (223)
-+..|+.++|+.|+...=.+... +-.+....++... ..++. +.+- ..+|++.
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i--~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI--RAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC--CcccEEE
Confidence 36678889999998654444222 2124555666554 33333 3343 4689876
No 227
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=29.86 E-value=1.4e+02 Score=18.27 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.1
Q ss_pred ccEEEeCCeeeeehHHHHHHHHhhC
Q 041800 55 IPVLVHNGKSIVESLIILEYIDDTW 79 (223)
Q Consensus 55 vP~L~~~g~~l~es~~I~~yl~~~~ 79 (223)
-||+..+| ...|-.+|.+|+....
T Consensus 16 dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 16 DPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred CceeCCcC-CEEcHHHHHHHHHcCC
Confidence 49988788 7799999999998843
No 228
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=29.13 E-value=1.9e+02 Score=19.84 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=36.2
Q ss_pred EEEEecCCCcHHHHHHH-------HHHHcCCCceEEecCCCCCChhhhh---------cCCCCCcccEEE---eCCeeee
Q 041800 6 VKLYGTWVSPFSRRIEL-------ALKLKGVPFEYIGVDLSNKSPELLK---------YNPIHKKIPVLV---HNGKSIV 66 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~-------~l~~~~i~~~~~~v~~~~~~~~~~~---------~~p~~~~vP~L~---~~g~~l~ 66 (223)
+..++.+.|++|++..- +....+-.|..+.++.... ++..+ .+. +-+|+++ .+|..+.
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~--~G~Pt~vfl~~~G~~~~ 95 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQ--GGWPLNVFLTPDLKPFF 95 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCC--CCCCEEEEECCCCCEEe
Confidence 44568889999997642 2222344688888887543 22221 133 3589876 2688887
Q ss_pred eh
Q 041800 67 ES 68 (223)
Q Consensus 67 es 68 (223)
.+
T Consensus 96 ~~ 97 (124)
T cd02955 96 GG 97 (124)
T ss_pred ee
Confidence 65
No 229
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=28.25 E-value=68 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=26.1
Q ss_pred ecCCCcHHHHHHHHHHHcCCCceEEecCCCC
Q 041800 10 GTWVSPFSRRIELALKLKGVPFEYIGVDLSN 40 (223)
Q Consensus 10 ~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~ 40 (223)
+.+.-+.++++...|+..||+|+........
T Consensus 7 S~SD~~~~~~a~~~L~~~gi~~dv~V~SaHR 37 (156)
T TIGR01162 7 SDSDLPTMKKAADILEEFGIPYELRVVSAHR 37 (156)
T ss_pred cHhhHHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 4456688999999999999999999887653
No 230
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=28.00 E-value=1.5e+02 Score=19.21 Aligned_cols=56 Identities=20% Similarity=0.171 Sum_probs=32.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHc-----C-C----CceEEecCCCCCChhhhhcCCCCCcccEEE--eCCe
Q 041800 6 VKLYGTWVSPFSRRIELALKLK-----G-V----PFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGK 63 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~-----~-i----~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 63 (223)
+..|+.++|+.|+...-.+... + . .+....++......-..+.+- ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v--~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI--NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC--CcCCEEEEEeCCc
Confidence 5677899999999776555321 1 1 244455665543322233344 4789986 3555
No 231
>PTZ00102 disulphide isomerase; Provisional
Probab=27.69 E-value=3.6e+02 Score=23.04 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=43.7
Q ss_pred cEEEEecCCCcHHHHHHHHH-------HHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeee-----eehHH
Q 041800 5 EVKLYGTWVSPFSRRIELAL-------KLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSI-----VESLI 70 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l-------~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l-----~es~~ 70 (223)
-++.|+.++|+.|++..=.+ ...+-++....++......-..+.+- ..+|++. .+|..+ .....
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV--RGYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCC--CcccEEEEEECCceEEecCCCCHHH
Confidence 36778899999998664211 22234566666766543322234444 3589875 455332 24577
Q ss_pred HHHHHHhhC
Q 041800 71 ILEYIDDTW 79 (223)
Q Consensus 71 I~~yl~~~~ 79 (223)
|.+|+.+..
T Consensus 130 l~~~l~~~~ 138 (477)
T PTZ00102 130 IVSWIKKLT 138 (477)
T ss_pred HHHHHHHhh
Confidence 899998875
No 232
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=27.37 E-value=82 Score=22.97 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=22.3
Q ss_pred EEEEecCCCcHHHHH----HHHHHHcCCCceEEecCC
Q 041800 6 VKLYGTWVSPFSRRI----ELALKLKGVPFEYIGVDL 38 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v----~~~l~~~~i~~~~~~v~~ 38 (223)
+.+|+...||||... +-+....++.++.+.+.+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 468899999999854 333445567777666654
No 233
>PRK15371 effector protein YopJ; Provisional
Probab=27.20 E-value=2e+02 Score=23.20 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHh
Q 041800 123 LLNEEILEQMKLLENELNGKDFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQ 192 (223)
Q Consensus 123 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 192 (223)
...+++...++.||..++.+.|+ -...+..|+-..+.+.-.... -..+..+ .-+..-.+.++.+.
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N~-r~P~LNL---~~f~s~~~f~~aik 87 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQANN-KYPEMNL---KLVTSPLDLSIEIK 87 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHhc-cCCCCCe---eecCCHHHHHHHHH
Confidence 35677889999999999988888 456899999999877665421 1224333 33444445555544
No 234
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=26.57 E-value=1.6e+02 Score=18.12 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=31.7
Q ss_pred cEEEEecCCCcHHHHHHHHHHH----c--CCCceEEecCCCCCChhhh-hcCCCCCcccEEE
Q 041800 5 EVKLYGTWVSPFSRRIELALKL----K--GVPFEYIGVDLSNKSPELL-KYNPIHKKIPVLV 59 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~----~--~i~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 59 (223)
-+.+|+.+.|++|+...-.+.. . +-.+....++... ...+. ..+- ..+|++.
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i--~~~Pt~~ 76 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV--RGYPTIK 76 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC--CCCCEEE
Confidence 4778888999999976665533 2 2345555666543 23333 3343 4689875
No 235
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=26.56 E-value=1.9e+02 Score=20.78 Aligned_cols=24 Identities=21% Similarity=0.696 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhh
Q 041800 84 ILPRDPHQRAVARFWAKFIDEKLL 107 (223)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~~l~ 107 (223)
++|.++........|..-......
T Consensus 30 lwP~~~~~~~~s~~Wqq~l~~~a~ 53 (148)
T PF12486_consen 30 LWPDNPQQQQLSQQWQQQLEARAL 53 (148)
T ss_pred HCCCCHHHHHHHHHHHHHHHHhCC
Confidence 677788888888888887765443
No 236
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=26.13 E-value=69 Score=19.05 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=15.9
Q ss_pred EEEE----ecCCCcHHHHHHHHHHH
Q 041800 6 VKLY----GTWVSPFSRRIELALKL 26 (223)
Q Consensus 6 ~~Ly----~~~~s~~~~~v~~~l~~ 26 (223)
++|| +...|.||.+|-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 6777 44578899999888854
No 237
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.29 E-value=50 Score=22.53 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCceEEecCCCC-CChhhhhcCCCCCcccEEEe---CCeeeeehHHHHHHHHhhCC
Q 041800 17 SRRIELALKLKGVPFEYIGVDLSN-KSPELLKYNPIHKKIPVLVH---NGKSIVESLIILEYIDDTWK 80 (223)
Q Consensus 17 ~~~v~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~---~g~~l~es~~I~~yl~~~~~ 80 (223)
...++=+....|++.+...++-.. ...+-....|+.|-.|+++| --...-|...|++|+..+..
T Consensus 25 P~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 25 PALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 334555566778877765544211 00111113444577888775 34556677888888887753
No 238
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=3.7e+02 Score=23.66 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=46.9
Q ss_pred EEEEecCCCcHHH-------HHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCee------eeehHH
Q 041800 6 VKLYGTWVSPFSR-------RIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKS------IVESLI 70 (223)
Q Consensus 6 ~~Ly~~~~s~~~~-------~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~------l~es~~ 70 (223)
+.-||-|+|+.|. ++.-.|.+.|=+.....||.......-.+..- .-.|+|. .+|.. -.+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v--~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEV--RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcC--CCCCeEEEEecCCcceeccCcccHHH
Confidence 4567888888877 34455566666888888887643222122232 3479986 36653 246788
Q ss_pred HHHHHHhhCC
Q 041800 71 ILEYIDDTWK 80 (223)
Q Consensus 71 I~~yl~~~~~ 80 (223)
|+.||-.+.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999988864
No 239
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=23.78 E-value=1.3e+02 Score=15.94 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=19.2
Q ss_pred CcccEEEeCCeeeeehHHHHHHHH
Q 041800 53 KKIPVLVHNGKSIVESLIILEYID 76 (223)
Q Consensus 53 ~~vP~L~~~g~~l~es~~I~~yl~ 76 (223)
|.+|....++..+.....|.+|+.
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 678887777788888888888875
No 240
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=23.45 E-value=1.4e+02 Score=21.61 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=22.6
Q ss_pred EEEE-ecCCCcHHH-------HHHHHHHHcCCCceEEecCCC
Q 041800 6 VKLY-GTWVSPFSR-------RIELALKLKGVPFEYIGVDLS 39 (223)
Q Consensus 6 ~~Ly-~~~~s~~~~-------~v~~~l~~~~i~~~~~~v~~~ 39 (223)
+.|| +...||-|+ ...-.+...+-|++.+.|+.+
T Consensus 36 V~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 36 VGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred EEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 4455 344677676 455566667778999988765
No 241
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=23.45 E-value=2e+02 Score=18.10 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=32.4
Q ss_pred cEEEEecCCCcHHHHHHHHH-----HHcC--CCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCee
Q 041800 5 EVKLYGTWVSPFSRRIELAL-----KLKG--VPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKS 64 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l-----~~~~--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 64 (223)
-+..|+.++|+.|+...-.+ ...+ -.+....++......-....+. ..+|++. .+|..
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~~ 85 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV--RGYPTLLLFKDGEK 85 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC--CcCCEEEEEeCCCe
Confidence 35677888999999653322 3333 2455566665543322234444 4689876 35543
No 242
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=23.44 E-value=2.5e+02 Score=19.19 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHH----HHcCCCceEEecCCCCC------ChhhhhcCCCCC-cccEEE--eCCeeeee
Q 041800 12 WVSPFSRRIELAL----KLKGVPFEYIGVDLSNK------SPELLKYNPIHK-KIPVLV--HNGKSIVE 67 (223)
Q Consensus 12 ~~s~~~~~v~~~l----~~~~i~~~~~~v~~~~~------~~~~~~~~p~~~-~vP~L~--~~g~~l~e 67 (223)
++||.|+.+.-.+ ....-.+....|+.++. ..++...--. . .+|++. .+|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecc
Confidence 7899999654333 33332355566665431 2333321111 3 599987 34444443
No 243
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=23.41 E-value=2.1e+02 Score=18.37 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=29.0
Q ss_pred EEEEecCCCcHHHHHHHHH-----HHc--CCCceEEecCCCCCChhhhhcCCCCCcccEEE
Q 041800 6 VKLYGTWVSPFSRRIELAL-----KLK--GVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV 59 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l-----~~~--~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 59 (223)
+..|+.++||.|++..-.+ ... +..+....++......-....+. ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I--~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV--RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC--ccccEEE
Confidence 5667888999999555333 221 33455555554432222233454 4689976
No 244
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=3e+02 Score=21.23 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=46.5
Q ss_pred cEEEEecCCCcHHHHHHHHHHHcCCCceEEecCCCCCChhhhhcCCCCCcccEEEeCCeeee----ehHHHHHHHHhh
Q 041800 5 EVKLYGTWVSPFSRRIELALKLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLVHNGKSIV----ESLIILEYIDDT 78 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~----es~~I~~yl~~~ 78 (223)
++++|.+..|.-|...-=.|+.+|+-=....++.....-.+.+..- =.+|.+..||..+. |...|-.-+..+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V--~SvP~Vf~DGel~~~dpVdp~~ies~~~G~ 87 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGV--ISVPSVFIDGELVYADPVDPEEIESILSGQ 87 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcce--eecceEEEcCeEEEcCCCCHHHHHHHHcCc
Confidence 4899999999999888889999888655555554332222222222 26898887776653 445565555443
No 245
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=23.25 E-value=3.1e+02 Score=20.12 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=33.3
Q ss_pred EEEEecCCCcHHHHHHHHH---HHcCCCceEEecCCCCCChhhhhcCCCCCcccEEE--eCCeeeee
Q 041800 6 VKLYGTWVSPFSRRIELAL---KLKGVPFEYIGVDLSNKSPELLKYNPIHKKIPVLV--HNGKSIVE 67 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l---~~~~i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~e 67 (223)
+..|+.++|+.|+.+--.| +..--.+.+..|+.... +....-+- ..+|++. .+|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEE
Confidence 4456778999998554333 11111345556665432 33333444 5799987 47877654
No 246
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.24 E-value=1.5e+02 Score=21.57 Aligned_cols=33 Identities=12% Similarity=-0.011 Sum_probs=21.2
Q ss_pred cEEEEecCCCcHHHHH----HHHHHHc--CCCceEEecC
Q 041800 5 EVKLYGTWVSPFSRRI----ELALKLK--GVPFEYIGVD 37 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v----~~~l~~~--~i~~~~~~v~ 37 (223)
++.+|..+.||||... +-+.+.. +++++.+...
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~ 40 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGG 40 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecc
Confidence 3889999999999833 3333343 5666655433
No 247
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=23.02 E-value=61 Score=23.01 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=16.4
Q ss_pred ccchHHHHHHHHHhhchhhh
Q 041800 179 EKFPVLLKWIGKLQEIDVVN 198 (223)
Q Consensus 179 ~~~p~l~~~~~~~~~~p~~~ 198 (223)
...-.|++|.+|+..+|.++
T Consensus 109 ~rr~~LqrfL~RV~~hP~L~ 128 (140)
T cd06891 109 KLKANLQRWFNRVCSDPILI 128 (140)
T ss_pred HHHHHHHHHHHHHhCChhhc
Confidence 44678999999999999554
No 248
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=22.95 E-value=1.7e+02 Score=19.71 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=30.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHcCC----CceEEecCCCCCChhhh--hcCCCCCcccEEE
Q 041800 6 VKLYGTWVSPFSRRIELALKLKGV----PFEYIGVDLSNKSPELL--KYNPIHKKIPVLV 59 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~~~i----~~~~~~v~~~~~~~~~~--~~~p~~~~vP~L~ 59 (223)
+..|+.++|+.|+...-.++...- ......|+.+. ..... +.+- ..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I--~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHF--FYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCC--cccCEEE
Confidence 567789999999977555544322 24445666553 32332 2343 3689876
No 249
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.86 E-value=94 Score=22.91 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=20.9
Q ss_pred EEEEecCCCcHHHHHHH----HHHHc----CCCceEEecCC
Q 041800 6 VKLYGTWVSPFSRRIEL----ALKLK----GVPFEYIGVDL 38 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~----~l~~~----~i~~~~~~v~~ 38 (223)
+.+|+...||||....- +.+.. ++.++.+.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 46899999999994443 33444 45555555543
No 250
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.35 E-value=1.5e+02 Score=21.49 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=26.2
Q ss_pred EEecCCCcHHHHHHHHHHHcCCCceEEecCCCC
Q 041800 8 LYGTWVSPFSRRIELALKLKGVPFEYIGVDLSN 40 (223)
Q Consensus 8 Ly~~~~s~~~~~v~~~l~~~~i~~~~~~v~~~~ 40 (223)
.-+.+..+..+.+.-.|++.||+|+.+.++...
T Consensus 9 MGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHR 41 (162)
T COG0041 9 MGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHR 41 (162)
T ss_pred ecCcchHHHHHHHHHHHHHcCCCeEEEEEeccC
Confidence 334555677788999999999999999998653
No 251
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=22.11 E-value=4.7e+02 Score=22.04 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=43.1
Q ss_pred cEEEEecCCCcHHHHHHHHH-----HHc--CCCceEEecCCCCCChhhh-hcCCCCCcccEEE--eCCee-e------ee
Q 041800 5 EVKLYGTWVSPFSRRIELAL-----KLK--GVPFEYIGVDLSNKSPELL-KYNPIHKKIPVLV--HNGKS-I------VE 67 (223)
Q Consensus 5 ~~~Ly~~~~s~~~~~v~~~l-----~~~--~i~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~--~~g~~-l------~e 67 (223)
-+.+|+.++|+.|+...-.+ ... +-++....++.... .++. +.+- ..+|++. .+|.. + .+
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i--~~~Pt~~~~~~g~~~~~~~~g~~~ 97 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV--SGYPTLKIFRNGEDSVSDYNGPRD 97 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC--ccccEEEEEeCCccceeEecCCCC
Confidence 36778899999999764222 222 32356666666543 2333 3344 3589875 34543 1 24
Q ss_pred hHHHHHHHHhhCC
Q 041800 68 SLIILEYIDDTWK 80 (223)
Q Consensus 68 s~~I~~yl~~~~~ 80 (223)
...|.+++.+..+
T Consensus 98 ~~~l~~~i~~~~~ 110 (462)
T TIGR01130 98 ADGIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHHHhcC
Confidence 6778888877653
No 252
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=21.21 E-value=3e+02 Score=19.24 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=31.0
Q ss_pred EEEEecCCCcHHHHHHHHHHH----cCCCceEEecCCCCC--ChhhhhcCCCCCcccEEE--e-CCeee
Q 041800 6 VKLYGTWVSPFSRRIELALKL----KGVPFEYIGVDLSNK--SPELLKYNPIHKKIPVLV--H-NGKSI 65 (223)
Q Consensus 6 ~~Ly~~~~s~~~~~v~~~l~~----~~i~~~~~~v~~~~~--~~~~~~~~p~~~~vP~L~--~-~g~~l 65 (223)
+..|+.++|+.|+...=.+.. .+-.+..+.++.... .......+- ..+|+++ + +|.++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V--~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV--DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC--CCCCEEEEECCCCCEE
Confidence 556788899999866544432 122244444444321 122234444 3589875 3 56555
No 253
>PRK13949 shikimate kinase; Provisional
Probab=20.99 E-value=1.5e+02 Score=21.48 Aligned_cols=30 Identities=13% Similarity=0.011 Sum_probs=26.1
Q ss_pred CCcEEEEecCCCcHHHHHHHHHHHcCCCce
Q 041800 3 EEEVKLYGTWVSPFSRRIELALKLKGVPFE 32 (223)
Q Consensus 3 ~~~~~Ly~~~~s~~~~~v~~~l~~~~i~~~ 32 (223)
|..+.|.+.++|+-+...+.+.+..|+++-
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~i 30 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 347999999999999999999999997655
No 254
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=20.65 E-value=1.5e+02 Score=18.66 Aligned_cols=42 Identities=12% Similarity=0.311 Sum_probs=25.8
Q ss_pred CccccCCCCHhHHHHHHHHhHhhhhhhhcCccccCcccchHHHHHHHHHh
Q 041800 143 DFFGGEAIGLVDIVATVVAFWFPISHEVLGVEVITQEKFPVLLKWIGKLQ 192 (223)
Q Consensus 143 ~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 192 (223)
+|+. .++ =|+..|+++.++... . .... .+.--++..|.+++.
T Consensus 35 ky~t--~l~-~DvL~~~ll~~L~~~--~-r~~~--k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 35 KYFT--DLG-YDVLTFCLLERLSNP--G-RSRL--KDDGTNISQWLQSLA 76 (77)
T ss_pred hhcc--hhh-HHHHHHHHHHHHhcc--c-chhc--CcCCCCHHHHHHHHh
Confidence 4652 233 388889888877421 1 1222 355688899998864
Done!