BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041801
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MHM|A Chain A, Crystal Structure Of S-Adenosylmethionine Decarboxylase
From Potato
Length = 288
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 156/278 (56%), Gaps = 22/278 (7%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSF 130
SLFVY KIIIKTCGTT+LL +I P++ A L+L + RYTRGSFIFP +Q FPH F
Sbjct: 2 SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHF 61
Query: 131 KEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEI 190
EEV L+ KA +M S + WHV++AS + V +TLE+
Sbjct: 62 SEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPV-------YTLEM 114
Query: 191 CMTELDRTMA----KNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVDGDR 246
CMT LDR A K +++ MT CDF F+PCGYSMN ++G
Sbjct: 115 CMTGLDREKASVFYKTEESSAAHMT--VRSGIRKILPKSEICDFEFEPCGYSMNSIEGAA 172
Query: 247 YSTIHVTPEDGFSYASFECVGSVYDDHD-EVAQMLKRVVQVFKPATMSVSTTCTSHEVWT 305
STIH+TPEDGF+YASFE VG Y+ E+ +++RV+ F+PA SV+ +V T
Sbjct: 173 VSTIHITPEDGFTYASFESVG--YNPKTMELGPLVERVLACFEPAEFSVALHA---DVAT 227
Query: 306 RVVHAIEPLGLKCRSCVM---DEFPAAGSVVFQTFTAT 340
+++ I + +K S +EF GS+V+Q FT T
Sbjct: 228 KLLERICSVDVKGYSLAEWSPEEFGEGGSIVYQKFTRT 265
>pdb|1MSV|A Chain A, The S68a S-adenosylmethionine Decarboxylase Proenzyme
Processing Mutant.
pdb|1MSV|B Chain B, The S68a S-adenosylmethionine Decarboxylase Proenzyme
Processing Mutant
Length = 354
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 181/358 (50%), Gaps = 42/358 (11%)
Query: 1 MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQ 60
M + FEG EK LE+ F P N + LR + +L VQC+++S
Sbjct: 1 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGD--LRTIPRSEWDILLKDVQCSIISVTKTD 58
Query: 61 YFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFI 118
+AYVLSE+S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+
Sbjct: 59 KQEAYVLSEASMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFM 118
Query: 119 FPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLV 178
P Q +PH +F+EE+ +L P Y ++ S W+++T ++ R +
Sbjct: 119 KPSHQGYPHRNFQEEIEFLNAIFPNGAAY-----CMGRMNSDCWYLYTLDFPES--RVIS 171
Query: 179 SGDVNATFTLEICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFD 233
D TLEI M+ELD + K+G TA K++T + F+
Sbjct: 172 QPDQ----TLEILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFN 224
Query: 234 PCGYSMNGVDGD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPA 290
PCGYSMNG+ D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP
Sbjct: 225 PCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPG 278
Query: 291 TMSVSTTCTSHEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTFTATRRK 343
V+T + R V A IE L C+S + +++ + VF +F +++
Sbjct: 279 KF-VTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSFAKKQQQ 331
>pdb|1JL0|A Chain A, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
pdb|1JL0|B Chain B, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
Length = 334
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 180/358 (50%), Gaps = 42/358 (11%)
Query: 1 MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQ 60
M + FEG EK LE+ F P N + LR + +L VQC+++S
Sbjct: 1 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGD--LRTIPRSEWDILLKDVQCSIISVTKTD 58
Query: 61 YFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFI 118
+AYVLSESS+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+
Sbjct: 59 KQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFM 118
Query: 119 FPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLV 178
P Q +PH +F+EE+ +L P A ++ S W+++T ++ R +
Sbjct: 119 KPSHQGYPHRNFQEEIEFLNAIFP-----NGAGYCMGRMNSDCWYLYTLDFPES--RVIS 171
Query: 179 SGDVNATFTLEICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFD 233
D TLEI M+ELD + K+G TA K++T + F+
Sbjct: 172 QPDQ----TLEILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFN 224
Query: 234 PCGYSMNGVDGD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPA 290
PCGYSMNG+ D Y TI +TPE FSY SFE + YDD ++++VV+VFKP
Sbjct: 225 PCGYSMNGMKSDGTYWTIAITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPG 278
Query: 291 TMSVSTTCTSHEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTFTATRRK 343
V+T + R V A IE L C+S + +++ + VF +F +++
Sbjct: 279 KF-VTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSFAKKQQQ 331
>pdb|3H0V|A Chain A, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio)
Adenosine
pdb|3H0W|A Chain A, Human Adometdc With 5'-Deoxy-5'-[(N-Dimethyl)amino]-8-
Methyl-Adenosine
Length = 266
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 148/288 (51%), Gaps = 40/288 (13%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A+ ++ S W+++T ++ R + D TL
Sbjct: 61 NFQEEIEFLNAIFP-----NGAAYCMGRMNSDCWYLYTLDFPES--RVISQPDQ----TL 109
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
EI M+ELD + K+G TA K++T + F+PCGYSMNG+
Sbjct: 110 EILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFNPCGYSMNGMK 166
Query: 244 GD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T +
Sbjct: 167 SDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 219
Query: 301 HEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTFTATRRK 343
R V A IE L C+S + +++ + VF +F +++
Sbjct: 220 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSFAKKQQQ 263
>pdb|3DZ2|A Chain A, Human Adometdc With
5'-[(3-Aminopropyl)methylamino]-5'deoxy-
8-Methyladenosine
pdb|3DZ4|A Chain A, Human Adometdc With
5'-[(2-Carboxamidoethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3DZ5|A Chain A, Human Adometdc With Covalently Bound 5'-[(2-Aminooxyethyl)
Methylamino]-5'-Deoxy-8-Methyladenosine
pdb|3DZ6|A Chain A, Human Adometdc With 5'-[(4-Aminooxybutyl)methylamino]-
5'deoxy-8-Ethyladenosine
pdb|3DZ7|A Chain A, Human Adometdc With
5'-[(Carboxamidomethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
Length = 267
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 148/288 (51%), Gaps = 40/288 (13%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A+ ++ S W+++T ++ R + D TL
Sbjct: 62 NFQEEIEFLNAIFP-----NGAAYCMGRMNSDCWYLYTLDFPES--RVISQPDQ----TL 110
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
EI M+ELD + K+G TA K++T + F+PCGYSMNG+
Sbjct: 111 EILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFNPCGYSMNGMK 167
Query: 244 GD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T +
Sbjct: 168 SDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 220
Query: 301 HEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTFTATRRK 343
R V A IE L C+S + +++ + VF +F +++
Sbjct: 221 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSFAKKQQQ 264
>pdb|1I72|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl)
Amino]adenosine
pdb|1I79|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[(3-Hydrazinopropyl) Methylamino]adenosine
pdb|1I7B|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
S-Adenosylmethionine Methyl Ester
pdb|1I7C|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With Methylglyoxal
Bis-(Guanylhydrazone)
Length = 267
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 40/288 (13%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A ++ S W+++T ++ R + D TL
Sbjct: 62 NFQEEIEFLNAIFP-----NGAGYCMGRMNSDCWYLYTLDFPES--RVISQPDQ----TL 110
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
EI M+ELD + K+G TA K++T + F+PCGYSMNG+
Sbjct: 111 EILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFNPCGYSMNGMK 167
Query: 244 GD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T +
Sbjct: 168 SDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 220
Query: 301 HEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTFTATRRK 343
R V A IE L C+S + +++ + VF +F +++
Sbjct: 221 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSFAKKQQQ 264
>pdb|1JEN|A Chain A, Human S-Adenosylmethionine Decarboxylase
pdb|1JEN|C Chain C, Human S-Adenosylmethionine Decarboxylase
Length = 267
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 147/288 (51%), Gaps = 40/288 (13%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A+ ++ S W+++T ++ R + D TL
Sbjct: 62 NFQEEIEFLNAIFP-----NGAAYCMGRMNSDCWYLYTLDFPES--RVISQPDQ----TL 110
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
EI M+ELD + K+G TA K++T + F+PCGYSMNG+
Sbjct: 111 EILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFNPCGYSMNGMK 167
Query: 244 GD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T +
Sbjct: 168 SDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 220
Query: 301 HEVWTRVV----HAIEPLG-LKCRSCVMDEFPAAGSVVFQTFTATRRK 343
R V IE L C+S + +++ + VF +F +++
Sbjct: 221 QSSKCRTVLRSPQKIEGFKRLDCQSAMFNDY----NFVFTSFAKKQQQ 264
>pdb|3EP9|A Chain A, Human Adometdc With No Putrescine Bound
Length = 260
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 145/282 (51%), Gaps = 40/282 (14%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A+ ++ S W+++T ++ R + D TL
Sbjct: 61 NFQEEIEFLNAIFP-----NGAAYCMGRMNSDCWYLYTLDFPES--RVISQPDQ----TL 109
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
EI M+ELD + K+G TA K++T + F+PCGYSMNG+
Sbjct: 110 EILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFNPCGYSMNGMK 166
Query: 244 GD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T +
Sbjct: 167 SDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 219
Query: 301 HEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTF 337
R V A IE L C+S + +++ + VF +F
Sbjct: 220 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSF 257
>pdb|3EP3|A Chain A, Human Adometdc D174n Mutant With No Putrescine Bound
pdb|3EP6|A Chain A, Human Adometdc D174n Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
Length = 260
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 40/282 (14%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A+ ++ S W+++T ++ +++S TL
Sbjct: 61 NFQEEIEFLNAIFP-----NGAAYCMGRMNSDCWYLYTLDFPES---RVIS---QPNQTL 109
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
EI M+ELD + K+G TA K++T + F+PCGYSMNG+
Sbjct: 110 EILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFNPCGYSMNGMK 166
Query: 244 GD-RYSTIHVTPEDGFSYASFE--CVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T +
Sbjct: 167 SDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 219
Query: 301 HEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTF 337
R V A IE L C+S + +++ + VF +F
Sbjct: 220 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSF 257
>pdb|3EP5|A Chain A, Human Adometdc E178q Mutant With No Putrescine Bound
pdb|3EP8|A Chain A, Human Adometdc E178q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EPA|A Chain A, Human Adometdc E178q Mutant Complexed With Putrescine
Length = 260
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 40/282 (14%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A+ ++ S W+++T ++ R + D TL
Sbjct: 61 NFQEEIEFLNAIFP-----NGAAYCMGRMNSDCWYLYTLDFPES--RVISQPDQ----TL 109
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
+I M+ELD + K+G TA K++T + F+PCGYSMNG+
Sbjct: 110 QILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFNPCGYSMNGMK 166
Query: 244 GD-RYSTIHVTPEDGFSYASFE--CVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T +
Sbjct: 167 SDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 219
Query: 301 HEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTF 337
R V A IE L C+S + +++ + VF +F
Sbjct: 220 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSF 257
>pdb|3EP4|A Chain A, Human Adometdc E256q Mutant With No Putrescine Bound
pdb|3EP7|A Chain A, Human Adometdc E256q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EPB|A Chain A, Human Adometdc E256q Mutant Complexed With Putrescine
Length = 260
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 40/282 (14%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 1 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 60
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A+ ++ S W+++T ++ R + D TL
Sbjct: 61 NFQEEIEFLNAIFP-----NGAAYCMGRMNSDCWYLYTLDFPES--RVISQPDQ----TL 109
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
EI M+ELD + K+G TA K++T + F+PCGYSMNG+
Sbjct: 110 EILMSELDPAVMDQFYMKDGVTA-KDVTRESGIRDLIPGSVIDAT--MFNPCGYSMNGMK 166
Query: 244 GD-RYSTIHVTPEDGFSYASFE--CVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SF+ + YDD ++++VV+VFKP V+T +
Sbjct: 167 SDGTYWTIHITPEPEFSYVSFQTNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 219
Query: 301 HEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTF 337
R V A IE L C+S + +++ + VF +F
Sbjct: 220 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSF 257
>pdb|3DZ3|A Chain A, Human Adometdc F223a Mutant With Covalently Bound S-
Adenosylmethionine Methyl Ester
Length = 267
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 145/289 (50%), Gaps = 42/289 (14%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S+FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F+ P Q +PH
Sbjct: 2 SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHR 61
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P Y ++ S W+++T ++ R + D TL
Sbjct: 62 NFQEEIEFLNAIFPNGAAYCMG-----RMNSDCWYLYTLDFPES--RVISQPDQ----TL 110
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAF-DPCGYSMNGV 242
EI M+ELD + K+G TA ++T D +PCGYSMNG+
Sbjct: 111 EILMSELDPAVMDQFYMKDGVTA----KDVTRESGIRDLIPGSVIDATMANPCGYSMNGM 166
Query: 243 DGD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCT 299
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T
Sbjct: 167 KSDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFV 219
Query: 300 SHEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTFTATRRK 343
+ R V A IE L C+S + +++ + VF +F +++
Sbjct: 220 NQSSKCRTVLASPQKIEGFKRLDCQSAMFNDY----NFVFTSFAKKQQQ 264
>pdb|1I7M|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
pdb|1I7M|C Chain C, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
Length = 267
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 140/288 (48%), Gaps = 40/288 (13%)
Query: 71 SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNL--TLCACRYTRGSFIFPKSQPFPHT 128
S FV + I+KTCGTT LLK++ PL+ A D + ++ + Y+R +F P Q +PH
Sbjct: 2 SXFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFXKPSHQGYPHR 61
Query: 129 SFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTL 188
+F+EE+ +L P A + S W+++T ++ R + D TL
Sbjct: 62 NFQEEIEFLNAIFP-----NGAGYCXGRXNSDCWYLYTLDFPES--RVISQPDQ----TL 110
Query: 189 EICMTELDRTM-----AKNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVD 243
EI +ELD + K+G TA K++T + F+PCGYS NG
Sbjct: 111 EILXSELDPAVXDQFYXKDGVTA-KDVTRESGIRDLIPGSVIDAT--XFNPCGYSXNGXK 167
Query: 244 GD-RYSTIHVTPEDGFSYASFEC--VGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTS 300
D Y TIH+TPE FSY SFE + YDD ++++VV+VFKP V+T +
Sbjct: 168 SDGTYWTIHITPEPEFSYVSFETNLSQTSYDD------LIRKVVEVFKPGKF-VTTLFVN 220
Query: 301 HEVWTRVVHA----IEPLG-LKCRSCVMDEFPAAGSVVFQTFTATRRK 343
R V A IE L C+S +++ + VF +F +++
Sbjct: 221 QSSKCRTVLASPQKIEGFKRLDCQSAXFNDY----NFVFTSFAKKQQQ 264
>pdb|1MHM|B Chain B, Crystal Structure Of S-Adenosylmethionine Decarboxylase
From Potato
Length = 72
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 1 MAVSA-GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGN 59
+ VSA GFEGFEKRLE+ F +P N GLR L L E+L +CT+V + N
Sbjct: 5 LPVSAIGFEGFEKRLEISFV--EPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSN 62
Query: 60 QYFDAYVLSE 69
Y D+YVLSE
Sbjct: 63 DYVDSYVLSE 72
>pdb|1JEN|B Chain B, Human S-Adenosylmethionine Decarboxylase
pdb|1JEN|D Chain D, Human S-Adenosylmethionine Decarboxylase
pdb|1I72|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl)
Amino]adenosine
pdb|1I79|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[(3-Hydrazinopropyl) Methylamino]adenosine
pdb|1I7B|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
S-Adenosylmethionine Methyl Ester
pdb|1I7C|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With Methylglyoxal
Bis-(Guanylhydrazone)
pdb|3EP3|B Chain B, Human Adometdc D174n Mutant With No Putrescine Bound
pdb|3EP4|B Chain B, Human Adometdc E256q Mutant With No Putrescine Bound
pdb|3EP5|B Chain B, Human Adometdc E178q Mutant With No Putrescine Bound
pdb|3EP6|B Chain B, Human Adometdc D174n Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP7|B Chain B, Human Adometdc E256q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP8|B Chain B, Human Adometdc E178q Mutant Complexed With S-
Adenosylmethionine Methyl Ester And No Putrescine Bound
pdb|3EP9|B Chain B, Human Adometdc With No Putrescine Bound
pdb|3EPA|B Chain B, Human Adometdc E178q Mutant Complexed With Putrescine
pdb|3EPB|B Chain B, Human Adometdc E256q Mutant Complexed With Putrescine
pdb|3DZ2|B Chain B, Human Adometdc With
5'-[(3-Aminopropyl)methylamino]-5'deoxy-
8-Methyladenosine
pdb|3DZ3|B Chain B, Human Adometdc F223a Mutant With Covalently Bound S-
Adenosylmethionine Methyl Ester
pdb|3DZ4|B Chain B, Human Adometdc With
5'-[(2-Carboxamidoethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3DZ5|B Chain B, Human Adometdc With Covalently Bound
5'-[(2-Aminooxyethyl)
Methylamino]-5'-Deoxy-8-Methyladenosine
pdb|3DZ6|B Chain B, Human Adometdc With 5'-[(4-Aminooxybutyl)methylamino]-
5'deoxy-8-Ethyladenosine
pdb|3DZ7|B Chain B, Human Adometdc With
5'-[(Carboxamidomethyl)methylamino]-5'-
Deoxy-8-Methyladenosine
pdb|3H0V|B Chain B, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio)
Adenosine
pdb|3H0W|B Chain B, Human Adometdc With 5'-Deoxy-5'-[(N-Dimethyl)amino]-8-
Methyl-Adenosine
Length = 67
Score = 34.7 bits (78), Expect = 0.079, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 1 MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQ 60
M + FEG EK LE+ F P N LR + +L VQC+++S
Sbjct: 1 MEAAHFFEGTEKLLEVWFSRQQPDAN--QGSGDLRTIPRSEWDILLKDVQCSIISVTKTD 58
Query: 61 YFDAYVLSE 69
+AYVLSE
Sbjct: 59 KQEAYVLSE 67
>pdb|1I7M|B Chain B, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
pdb|1I7M|D Chain D, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With
4-Amidinoindan-1-One-2'- Amidinohydrazone
Length = 67
Score = 34.3 bits (77), Expect = 0.099, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 7 FEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYV 66
FEG EK LE+ F P N LR + +L VQC+++S +AYV
Sbjct: 7 FEGTEKLLEVWFSRQQPDAN--QGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYV 64
Query: 67 LSE 69
LSE
Sbjct: 65 LSE 67
>pdb|3GUY|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|C Chain C, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|D Chain D, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|E Chain E, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|F Chain F, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|G Chain G, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|H Chain H, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
Length = 230
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 18/150 (12%)
Query: 24 LNNLIDNEMGLRLLDFESLQEV------LDAVQCTVVSAVGNQYFDAYVLSESSLFVYPT 77
+ N + N +G R D S QEV LD++ TVV + G+ YF +L E P
Sbjct: 41 VTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAGSGYFG--LLQEQD----PE 94
Query: 78 KI-IIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFY 136
+I + + + +R LV D + + T PK+Q + + K V
Sbjct: 95 QIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ--QPKAQESTYCAVKWAVKG 152
Query: 137 LEENLPINLCYRKASVM---PSKLASHSWH 163
L E++ + L + ++ P +A+ W
Sbjct: 153 LIESVRLELKGKPMKIIAVYPGGMATEFWE 182
>pdb|3AQ2|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ2|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 207
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 DFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSL-FVYPTKIIIKTCGTTQLLKSIRP 95
DF S L +VV+ N+Y D Y+LS+ L +VY ++ + CG +LL S P
Sbjct: 33 DFRSTLSQLVYFNRSVVNP--NEYDDEYLLSDQRLTYVYVDEVTAQLCGLNRLLPSNSP 89
>pdb|3AQ3|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ3|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ3|C Chain C, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 211
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 59 NQYFDAYVLSESSL-FVYPTKIIIKTCGTTQLLKSIRP 95
N Y D Y+LS+ L +VY ++ + CG +LL S P
Sbjct: 52 NAYDDEYLLSDQRLTYVYVDEVTAQLCGLNRLLPSNSP 89
>pdb|2O1Q|A Chain A, Crystal Structure Of A Putative Acetylacetone Dioxygenase
(Mpe_a3659) From Methylibium Petroleiphilum Pm1 At 1.50
A Resolution
pdb|2O1Q|B Chain B, Crystal Structure Of A Putative Acetylacetone Dioxygenase
(Mpe_a3659) From Methylibium Petroleiphilum Pm1 At 1.50
A Resolution
Length = 145
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 234 PCGYSMNGVDGDRYSTIHVTPEDGFSYASFEC-VGSVYDDHDEVA 277
P +S G+ R+ +HV+PE G A F+C GS + H V
Sbjct: 23 PAAFSTGGI---RWKLLHVSPEXGSWTAIFDCPAGSSFAAHVHVG 64
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 3 VSAGFEGFEKRLELHFFGDDP----LNNLIDNEMGLRLLDFESLQEVLD-AVQCTVV 54
V G + E L++ FG +P L N ++ +G+ LD L EV+ V C V
Sbjct: 203 VRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECV 259
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 98 DYAHDL----NLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPIN 144
DY H L N+ C G F S P+T +K+ VFY+E+ L +
Sbjct: 261 DYVHALVAYFNIEFTRCHKRTG---FSTSPESPYTHWKQTVFYMEDYLTVK 308
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 98 DYAHDL----NLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPIN 144
DY H L N+ C G P+S P+T +K+ VFY+E+ L +
Sbjct: 251 DYVHALVAYFNIEFTRCHKRTGFSTSPES---PYTHWKQTVFYMEDYLTVK 298
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 98 DYAHDL----NLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPIN 144
DY H L N+ C G P+S P+T +K+ VFY+E+ L +
Sbjct: 248 DYVHALVAYFNIEFTRCHKRTGFSTSPES---PYTHWKQTVFYMEDYLTVK 295
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 98 DYAHDL----NLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPIN 144
DY H L N+ C G P+S P+T +K+ VFY+E+ L +
Sbjct: 257 DYVHALVAYFNIEFTRCHKRTGFSTSPES---PYTHWKQTVFYMEDYLTVK 304
>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
Length = 393
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 250 IHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFK 288
+H+ P F +++ +V D DE+ ++ K VVQV K
Sbjct: 144 LHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAK 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,576,454
Number of Sequences: 62578
Number of extensions: 363059
Number of successful extensions: 877
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 27
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)