Query 041801
Match_columns 343
No_of_seqs 110 out of 303
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02524 S-adenosylmethionine 100.0 3E-124 7E-129 912.6 36.0 325 6-341 7-336 (355)
2 TIGR00535 SAM_DCase S-adenosyl 100.0 7E-120 2E-124 876.2 34.0 318 7-340 1-333 (334)
3 PF01536 SAM_decarbox: Adenosy 100.0 3E-116 8E-121 854.8 27.2 318 6-340 4-330 (331)
4 KOG0788 S-adenosylmethionine d 100.0 4E-116 8E-121 834.7 26.1 322 6-342 6-334 (334)
5 TIGR03330 SAM_DCase_Bsu S-aden 95.9 0.029 6.3E-07 47.5 6.8 80 208-297 30-109 (112)
6 PRK04025 S-adenosylmethionine 95.1 0.064 1.4E-06 47.3 6.6 83 208-300 31-113 (139)
7 PF02675 AdoMet_dc: S-adenosyl 94.5 0.062 1.4E-06 44.6 4.7 79 208-297 25-103 (106)
8 PRK02770 S-adenosylmethionine 94.2 0.15 3.2E-06 45.0 6.7 82 208-299 44-125 (139)
9 PRK01706 S-adenosylmethionine 93.6 0.22 4.8E-06 43.0 6.5 83 208-300 33-115 (123)
10 PRK03124 S-adenosylmethionine 93.4 0.25 5.5E-06 42.8 6.5 83 208-300 31-113 (127)
11 PRK01236 S-adenosylmethionine 92.8 0.42 9.1E-06 41.7 7.0 83 208-300 32-114 (131)
12 PRK00458 S-adenosylmethionine 92.5 0.52 1.1E-05 40.9 7.2 82 208-299 42-124 (127)
13 COG1586 SpeD S-adenosylmethion 85.1 1.5 3.2E-05 38.7 4.6 68 226-297 53-120 (136)
14 PRK05462 S-adenosylmethionine 82.8 4.7 0.0001 39.2 7.3 70 227-299 68-170 (266)
15 TIGR03331 SAM_DCase_Eco S-aden 71.2 17 0.00037 35.3 7.4 70 227-299 64-166 (259)
16 PRK05462 S-adenosylmethionine 33.9 2.6E+02 0.0056 27.5 8.6 98 40-143 52-196 (266)
17 KOG3349 Predicted glycosyltran 31.5 98 0.0021 28.3 5.0 45 78-122 4-53 (170)
18 TIGR03331 SAM_DCase_Eco S-aden 28.7 3.7E+02 0.008 26.3 8.6 98 40-143 48-192 (259)
19 PF13619 KTSC: KTSC domain 24.5 72 0.0016 23.7 2.5 35 6-48 10-44 (60)
20 TIGR00133 gatB glutamyl-tRNA(G 21.4 92 0.002 32.9 3.4 35 91-125 56-92 (478)
21 COG4894 Uncharacterized conser 21.3 45 0.00098 30.1 1.0 70 69-138 35-114 (159)
22 KOG4120 G/T mismatch-specific 20.1 45 0.00097 33.8 0.8 14 230-243 367-380 (426)
No 1
>PLN02524 S-adenosylmethionine decarboxylase
Probab=100.00 E-value=3.3e-124 Score=912.58 Aligned_cols=325 Identities=50% Similarity=0.801 Sum_probs=295.6
Q ss_pred CCcccceEEEEEeecCCCCCcccCCCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCceeEEeCCeEEEeccC
Q 041801 6 GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCG 85 (343)
Q Consensus 6 ~FEG~EK~LEI~F~~~~~~~~~~~~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCG 85 (343)
+|||+||||||||.+++ +..++.+.|||+|||++|++||++|+|+|||+++|+++||||||||||||||+||||||||
T Consensus 7 ~FEG~EKrLEI~F~~~~--~~~~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCG 84 (355)
T PLN02524 7 GFEGFEKRLEITFFEPP--VFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQFDSYVLSESSLFVYPYKIIIKTCG 84 (355)
T ss_pred CccccceEEEEEEecCc--ccCCCCCCccccCCHHHHHHHHHHcCCEEEeecccCCceeeeecceeEEEECCEEEEEeCC
Confidence 99999999999997542 3334567999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHhhcCceeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCceEEccCCCCCCcEEEE
Q 041801 86 TTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVF 165 (343)
Q Consensus 86 TTtLL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ay~~g~~~~~~hW~ly 165 (343)
|||||+|||+||++|+++|++|++|+||||||+||+.|++||++|+|||++|+++|++++++|+||+||+.+++||||||
T Consensus 85 TT~LL~~i~~ll~la~~~~l~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~~~~~hW~lY 164 (355)
T PLN02524 85 TTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDKGQKWHVY 164 (355)
T ss_pred cccHHHHHHHHHHHHHHcCCceeEEEEecccccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999987778999999998889999999
Q ss_pred ecCCccccccccccCCCCCceeeeeeeccCchhhhh-----CCCCcHHHHHHHhCCccccCCCCccccccccCCCccccc
Q 041801 166 TASDAQATTRQLVSGDVNATFTLEICMTELDRTMAK-----NGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMN 240 (343)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~-----~~~~~~~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmN 240 (343)
++++..... ..++|+|||||||+||+++|+ .++++|.+||+.+||++|+| +++||||+|+|||||||
T Consensus 165 ~a~~~~~~~------~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~s~~~~t~~sgI~~i~P--~~~iddf~F~PCGYSmN 236 (355)
T PLN02524 165 SASAHNSSN------SNEPVYTLEMCMTGLDREKASVFFKDSSLSSAEEMTKASGIRKILP--ESEICDFAFDPCGYSMN 236 (355)
T ss_pred eCCCccccc------CCCCCeEEEEEccCCCHHHHhhhhhCcccccHHHHHHhhChhhhCC--CCeecccccCCCccccc
Confidence 998764321 136899999999999999993 36699999999999999999 99999999999999999
Q ss_pred ccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCCccccccccccCCCCceecc
Q 041801 241 GVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRS 320 (343)
Q Consensus 241 gi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~~~~~~~~~~~~~~gY~~~~ 320 (343)
||.|++|+|||||||++|||||||||+..... .++.+||+|||+||+|++|+||+|++..+.........++.||+|++
T Consensus 237 ~i~g~~y~TIHVTPE~~~SYaSFEtn~~~~~~-~~~~~lv~rVl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~gY~~~~ 315 (355)
T PLN02524 237 GIEGDAISTIHVTPEDGFSYASFEAMGYDPGD-LDLSQLVERVLACFKPKEFSVAVHANVGGEAGSWGCSLDPDGYSCKG 315 (355)
T ss_pred ccCCCceEEEEECCCCCCeEEEEEeccCCccc-cCHHHHHHHHHhhcCCceEEEEEEecCccchhccccccCcCCceecC
Confidence 99999999999999999999999999843322 57999999999999999999999998654433333345788999999
Q ss_pred eeeeeCCCCceEEEEEeeecc
Q 041801 321 CVMDEFPAAGSVVFQTFTATR 341 (343)
Q Consensus 321 ~~~~~f~~~~~l~y~~f~~~~ 341 (343)
+++++|++||+|+|++|+++.
T Consensus 316 ~~~~~l~~~~~l~y~~f~~~~ 336 (355)
T PLN02524 316 RSCQELPGGGSVVYQTFTATG 336 (355)
T ss_pred cEEEecCCCcEEEEEEEEecC
Confidence 999999998999999998854
No 2
>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form. This protein is a pyruvoyl-dependent enzyme. The proenzyme is cleaved at a Ser residue that becomes a pyruvoyl group active site.
Probab=100.00 E-value=7.4e-120 Score=876.19 Aligned_cols=318 Identities=39% Similarity=0.630 Sum_probs=280.9
Q ss_pred CcccceEEEEEeecCCCCCcccCCCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCceeEEeCCeEEEeccCc
Q 041801 7 FEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGT 86 (343)
Q Consensus 7 FEG~EK~LEI~F~~~~~~~~~~~~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGT 86 (343)
|||+||||||||.+++.. .+.+.|||+|||++|++||++|+|+|||+++|++|||||||||||||||||||||||||
T Consensus 1 FEG~EKrLEI~F~~~~~~---~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCGT 77 (334)
T TIGR00535 1 FEGPEKLLEIWFFEHKKF---IDEGKGLRAIGRAQIDEILDLARCTILSSKKNKSLDSYVLSESSLFIYDHKIIIKTCGT 77 (334)
T ss_pred CCCcceEEEEEEecCCcC---CCCCCChhhCCHHHHHHHHHhhCcEEeeeccCCceeEeEeccceeeEECCEEEEEeCCC
Confidence 999999999999864321 14669999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhc-Cc-eeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCceEEccCCCCCCcEEE
Q 041801 87 TQLLKSIRPLVDYAHDL-NL-TLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHV 164 (343)
Q Consensus 87 TtLL~~l~~ll~la~~~-g~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ay~~g~~~~~~hW~l 164 (343)
||||+|||+||++|+++ |+ .|++|+||||||+||++|++||+||+|||++|+++|++ |+||+||+.++.+|||+
T Consensus 78 TtLL~~l~~ll~~a~~~~g~~~v~~v~YsRksf~fP~~Q~~pH~sf~eEV~~L~~~F~~----g~AY~~G~~~~~~~Whl 153 (334)
T TIGR00535 78 TKLLFALPKILQLAEQLSSWYKVFSVFYSRGCFLFPCAQPAIHRNFSEEVAYLNKFFGN----GKAYVVGDPAKPQKWHL 153 (334)
T ss_pred chHHHHHHHHHHHHHHhcCcCceeEEEEecccccCcccCCCcCCCHHHHHHHHHHhcCC----CceEEeCCCCCCCceEE
Confidence 99999999999999885 77 58999999999999999999999999999999999986 79999999888899999
Q ss_pred EecCCccccccccccCCCCCceeeeeeeccCchhhh----hC----CCCcHHHHHHHhCCccccCCCC-ccccccccCCC
Q 041801 165 FTASDAQATTRQLVSGDVNATFTLEICMTELDRTMA----KN----GDTAGKEMTELTGIGGINPNPN-SIICDFAFDPC 235 (343)
Q Consensus 165 y~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a----~~----~~~~~~~~t~~sgi~~l~p~~~-~~id~f~F~PC 235 (343)
|+++...... ...++|+|||||||+||+++| +. +|..|.+||+.+||++|+| + +.||||+|+||
T Consensus 154 Y~~~~~~~~~-----~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~~h~~~~~~t~~sgI~~i~P--~~~~iddf~F~PC 226 (334)
T TIGR00535 154 YVAETERETP-----KIEDPDETLEMLMTGLDKEKASKFFKGPAASTHNLGYQMTKNSGIDKIIP--NSAQICDFDFEPC 226 (334)
T ss_pred EeCCCCcccc-----CCCCCceEeeeecccCCHHHHHhheeCcCCCccchHHHHHHHhChHhhcC--CcceeecccccCC
Confidence 9987643211 123589999999999999999 33 3444999999999999999 8 99999999999
Q ss_pred cccccccCC-CceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCCc-c-cccc-cccc
Q 041801 236 GYSMNGVDG-DRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHE-V-WTRV-VHAI 311 (343)
Q Consensus 236 GYSmNgi~~-~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~~-~-~~~~-~~~~ 311 (343)
|||||||.+ ++|+|||||||++|||||||||++.... .++.++|+|||++|+|++|+||+|++..+ . .... ....
T Consensus 227 GYSmNgi~~~~~Y~TIHITPE~~~SYaSFEtn~~~~~~-~~~~~li~~vl~~F~P~~f~vt~f~~~~~~~~~~~~~~~~~ 305 (334)
T TIGR00535 227 GYSMNAILGEKAYSTIHVTPEKGFSYASFESNGIDQGK-QDYLDLVLRVLNCFQPSEFSMTVFAKNYQNQSFQKLLSINE 305 (334)
T ss_pred cCccccccCCCcEEEEEEcCCCCceEEEEeeccCCccc-ccHHHHHHHHHHhcCCceEEEEEEecCcccchhhhhhhhcc
Confidence 999999998 7999999999999999999999764322 68999999999999999999999998542 1 1112 1123
Q ss_pred CCCCceecceeeeeCCCCceEEEEEeeec
Q 041801 312 EPLGLKCRSCVMDEFPAAGSVVFQTFTAT 340 (343)
Q Consensus 312 ~~~gY~~~~~~~~~f~~~~~l~y~~f~~~ 340 (343)
...||++.+++.++|++| +|+|++|++.
T Consensus 306 ~~~~y~~~~~~~~~~~~~-~l~y~~f~~~ 333 (334)
T TIGR00535 306 SLPDYIKLDKQELDLGDY-HLFYQKFQKK 333 (334)
T ss_pred ccCCccceeEEEecCCCe-eEEEEEEEec
Confidence 468999999999999975 9999999875
No 3
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=100.00 E-value=3.5e-116 Score=854.81 Aligned_cols=318 Identities=42% Similarity=0.678 Sum_probs=251.2
Q ss_pred CCcccceEEEEEeecCCCCCcccCCCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCceeEEeCCeEEEeccC
Q 041801 6 GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCG 85 (343)
Q Consensus 6 ~FEG~EK~LEI~F~~~~~~~~~~~~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCG 85 (343)
+|||+||||||||.++. ....++..|||+|||++|++||++|+|+|||+++|+++||||||||||||||+||||||||
T Consensus 4 ~FEG~EK~LEi~F~~~~--~~~~~~~~~LR~i~~~~w~~~L~~a~C~Ils~~sn~~~dAYvLSESSLFV~~~kiilKTCG 81 (331)
T PF01536_consen 4 FFEGPEKRLEIWFSPPS--VFSEPSARGLRSIPREFWDEMLDLAGCEILSEISNEHMDAYVLSESSLFVYPHKIILKTCG 81 (331)
T ss_dssp ----SEEEEEEEEE------------S-GGGS-HHHHHHHHHHCT-EEEEEEE-SSEEEEEEETEEEEEETTEEEEEEET
T ss_pred CccccceEEEEEEecCC--cCCCCCccccccCCHHHHHHHHHhcCCEEEEEEccCceeEEEccCceEEEECCEEEEEEcc
Confidence 89999999999998632 2233467999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHhhcCceeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCceEEccCCCCCCcEEEE
Q 041801 86 TTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVF 165 (343)
Q Consensus 86 TTtLL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ay~~g~~~~~~hW~ly 165 (343)
|||||+|||+||++|++++.+|+||+||||||+||++|++||++|++||++|+++||+ |+||++|+.+..+|||||
T Consensus 82 tT~Ll~~l~~ll~la~~~~~~v~~v~YsRknf~~P~~Q~~ph~sf~~Ev~~L~~~F~~----G~aY~~G~~~~d~~wyly 157 (331)
T PF01536_consen 82 TTTLLKALPPLLELAKELGDEVEWVFYSRKNFMFPELQPSPHRSFEEEVAYLDSFFPS----GKAYVMGPLDSDHHWYLY 157 (331)
T ss_dssp TS-GGGGHHHHHHHHHHCC-EEEEEEEEEE--SSGGGS-TTSSSHHHHHHHHHCCHTS----EEEEEECSTTSS-EEEEE
T ss_pred chhHHHHHHHHHHHHHHhccceeEEEEecccCCCcccCCCccCCHHHHHHHHHHHCCC----CcEEEeCCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999985 899999887734499999
Q ss_pred ecCCccccccccccCCCCCceeeeeeeccCchhhhh----CCCCcHHHHHHHhCCccccCCCCcccc-ccccCCCccccc
Q 041801 166 TASDAQATTRQLVSGDVNATFTLEICMTELDRTMAK----NGDTAGKEMTELTGIGGINPNPNSIIC-DFAFDPCGYSMN 240 (343)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~----~~~~~~~~~t~~sgi~~l~p~~~~~id-~f~F~PCGYSmN 240 (343)
+++..... ..++|+|||||||+|||++|+ ...++|.+||+++||++|+| ++.|| ||+|+|||||||
T Consensus 158 ~~~~~~~~-------~~~~D~TLEILMt~Ld~~~~~~F~~~~~~~~~~~t~~sgi~~l~p--~~~i~~~f~F~PCGYS~N 228 (331)
T PF01536_consen 158 TADTPESS-------SSEPDQTLEILMTDLDPEVASQFYRSESQSGEEITKASGIDDLFP--GFEIDDDFLFEPCGYSMN 228 (331)
T ss_dssp EEESSS-S--------SS--EEEEEEEECE-HHHHHCCC-BTTB-HHHHHHHTTGGGCST--TSEEE-EEE-SSC-EEEE
T ss_pred ecCccccc-------cCCCccchhhhhccCCHHHHHHHhcCCCccHHHHHHhhhhhcccC--CcccccccccCCcccccc
Confidence 99765431 126899999999999999994 57799999999999999999 99999 999999999999
Q ss_pred ccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCC--ccccccccccC--CCCc
Q 041801 241 GVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSH--EVWTRVVHAIE--PLGL 316 (343)
Q Consensus 241 gi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~--~~~~~~~~~~~--~~gY 316 (343)
|+.|+.|+|||||||++|||||||||+.... ..++.++|+|||++|||++|+||+|+... ..........+ ..||
T Consensus 229 ~~~~~~Y~TIHVTPE~~~SYaSFEtn~~~~~-~~~~~~li~~vl~~F~P~~f~~t~f~~~~~~~~~~~~~~~~~~~~~~~ 307 (331)
T PF01536_consen 229 GIDGDRYYTIHVTPEEGFSYASFETNVYDFS-QESYDDLIRKVLNIFKPGKFSVTLFASSNAEKDSESKLFDLDPKGYGY 307 (331)
T ss_dssp EECTTEEEEEEEE--TTS-EEEEEEES--TT-TS-CHHHHHHHHHHH-ECEEEEEEEECTSSHHHCCCSHC-BTTTTEEE
T ss_pred CCCCCeEEEEEECCCCCceEEEEEeccCCcC-cCCHHHHHHHHHheeCCcEEEEEEEecCCCcchhhhhccccccccccc
Confidence 9999999999999999999999999943221 15799999999999999999999997422 11222222233 3469
Q ss_pred eecceeeeeCCCCceEEEEEeeec
Q 041801 317 KCRSCVMDEFPAAGSVVFQTFTAT 340 (343)
Q Consensus 317 ~~~~~~~~~f~~~~~l~y~~f~~~ 340 (343)
++.|+|.++|++ |+|+|++|++.
T Consensus 308 ~~~d~~~~~~~~-y~lvy~~f~k~ 330 (331)
T PF01536_consen 308 KRTDRQEYDFDG-YDLVYASFEKK 330 (331)
T ss_dssp EEEEEEEECECC-EEEEEEEEEE-
T ss_pred cceeEEEccCCC-ceEEEEEEEEc
Confidence 999999999985 69999999875
No 4
>KOG0788 consensus S-adenosylmethionine decarboxylase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-116 Score=834.69 Aligned_cols=322 Identities=46% Similarity=0.730 Sum_probs=290.6
Q ss_pred CCcccceEEEEEeecCCCCCcccCCCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCceeEEeCCeEEEeccC
Q 041801 6 GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCG 85 (343)
Q Consensus 6 ~FEG~EK~LEI~F~~~~~~~~~~~~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCG 85 (343)
+|||+||||||||.++.+ ..+.+..|||+|+|++||+||+.|+|+|||.++|+.+||||||||||||||+||||||||
T Consensus 6 ~FEG~EKlLEvwF~~~~~--~~~~~~~~LR~i~rs~~DeiL~~v~C~IvS~~~n~~~dayvLSESSlFV~~~kiIlKTCG 83 (334)
T KOG0788|consen 6 GFEGPEKLLEVWFFEPKK--FSDKGGKGLRAISKSQWDEILKEVQCTIVSSLKNDEIDAYVLSESSLFVFKRKIILKTCG 83 (334)
T ss_pred ccccchheEEEEEccCcc--ccccCCccccccChhHHHHHhhhhceeEEeecccchhhhheecccceeEeeeEEEEEecc
Confidence 999999999999987543 234577999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHhhcC-ceeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCceEEccCCCCCCcEEE
Q 041801 86 TTQLLKSIRPLVDYAHDLN-LTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHV 164 (343)
Q Consensus 86 TTtLL~~l~~ll~la~~~g-~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ay~~g~~~~~~hW~l 164 (343)
||+||+|||+||+||+++| ..|.+|+||||||++|..|++||++|.+||++|+++||+ |+||+||+.+|++||||
T Consensus 84 TT~lL~sL~pLlkLA~~~~~~~v~~v~YSRknFl~P~~Q~~pH~sf~eEV~~L~~~F~~----g~ay~mG~~~~s~~W~l 159 (334)
T KOG0788|consen 84 TTLLLKALVPLLKLAGELSFDSVQSVFYSRKNFLFPGAQPYPHTSFDEEVEYLDKFFPN----GKAYCMGLNMNSKCWHL 159 (334)
T ss_pred chhHHHHHHHHHHHHHHhcccchHhheeccccccCcccCCCCCcCHHHHHHHHHHhcCC----CceEEecCCCCCCceEE
Confidence 9999999999999999999 469999999999999999999999999999999999995 89999998899999999
Q ss_pred EecCCccccccccccCCCCCceeeeeeeccCchhhh----hCCCCcHHHHHHHhCCccccCCCCccccccccCCCccccc
Q 041801 165 FTASDAQATTRQLVSGDVNATFTLEICMTELDRTMA----KNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMN 240 (343)
Q Consensus 165 y~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a----~~~~~~~~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmN 240 (343)
|++...... ....+||+|||||||+|||++| +....+|.+||+.+||++|+| +++||||+|+|||||||
T Consensus 160 ys~~~~~e~-----~~~~~~d~TlEvlMt~LD~e~a~~Fyk~~~~~a~~mT~~SGI~~I~p--~s~iddf~F~PCGYSmN 232 (334)
T KOG0788|consen 160 YSASADDES-----NVIDEPDYTLEVCMTELDPEKASVFYKNNAVSAKEMTDESGIDDILP--GSVIDDFAFEPCGYSMN 232 (334)
T ss_pred Eeccccccc-----cccCCCceeHHHHHhhhChhhhheeecccccccccchhhcchhhcCC--cceeecccccccccccc
Confidence 999776422 1345799999999999999999 567888999999999999999 99999999999999999
Q ss_pred ccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCCccccccccccCC--CCcee
Q 041801 241 GVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEP--LGLKC 318 (343)
Q Consensus 241 gi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~~~~~~~~~~~~~--~gY~~ 318 (343)
|+.+|+|+|||||||++|||||||||+... .+.++.++|+|||+||+|++|+||+|++..+...+.....+. .+|++
T Consensus 233 ~~~~d~y~TIHVTPE~~fSYaSFEt~~~~~-~~~~~~~li~kvl~~F~P~kfs~t~f~n~~~~~~~~~~~~~~~~~~~kr 311 (334)
T KOG0788|consen 233 GIDGDAYSTIHVTPEDGFSYASFETVGYDQ-GLLDLSELISKVLNCFKPNKFSVTVFANYGSESYKHLLSKDVERYGYKR 311 (334)
T ss_pred CcCCceEEEEEeccccCceEEEEEeecccc-ccccHHHHHHHHHHhcCcCcEEEEEEeeccchhhhhhhhhhhhhhhhee
Confidence 999999999999999999999999988543 347899999999999999999999999855554443333222 34999
Q ss_pred cceeeeeCCCCceEEEEEeeeccc
Q 041801 319 RSCVMDEFPAAGSVVFQTFTATRR 342 (343)
Q Consensus 319 ~~~~~~~f~~~~~l~y~~f~~~~~ 342 (343)
.+.+...|++| +|+|++|++.++
T Consensus 312 ~~~~~~~~~~~-~l~y~~f~k~~~ 334 (334)
T KOG0788|consen 312 RDMQSLGFESY-TLVYQSFTKKGK 334 (334)
T ss_pred ceeeEecCCCc-eEEEEEeeeccC
Confidence 99999999976 999999998753
No 5
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=95.87 E-value=0.029 Score=47.48 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=59.7
Q ss_pred HHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVF 287 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F 287 (343)
.+..+..|.. ++. +.-+.|+|.|+|.=+|......+||.=||.++-.+-.=|.... .++...++-+.+.|
T Consensus 30 ~~a~~~~g~t-i~~-----~~~h~F~p~Gvt~v~llaESHisiHTwPE~gyaavDiftCg~~----~~p~~a~~~l~~~f 99 (112)
T TIGR03330 30 LEAAKVAGAT-LVA-----SHFHKFSPGGVSGVVLLAESHISIHTWPEYGYAAVDVFTCGDH----SDPEKAFEYLVEAL 99 (112)
T ss_pred HHHHHHcCCE-EEE-----EEEEEcCCCcEEEEEEecccEEEEEeccCCCcEEEEEEecCCC----CCHHHHHHHHHHHh
Confidence 4444555544 222 3668899999999999999999999999976443333344332 36889999999999
Q ss_pred cCCeEEEEEE
Q 041801 288 KPATMSVSTT 297 (343)
Q Consensus 288 ~P~~f~~tl~ 297 (343)
+|++..++..
T Consensus 100 ~~~~~~~~~~ 109 (112)
T TIGR03330 100 KPKRVEVREL 109 (112)
T ss_pred CCCeEEEEEE
Confidence 9999998754
No 6
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=95.13 E-value=0.064 Score=47.26 Aligned_cols=83 Identities=19% Similarity=0.250 Sum_probs=62.8
Q ss_pred HHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVF 287 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F 287 (343)
.+..+..|..- +. +..+.|+|=|+|.-+|......+||.=||.+ ||.+.-=..... .++...++.+.+.|
T Consensus 31 ~~Aa~~~gati-l~-----~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDIftCg~~--~~p~~a~~~L~~~f 100 (139)
T PRK04025 31 LEAAKRGNMEV-KA-----SYFFKFSPTGVSGVVIVAESHISVHTWPEKG--YAALDVYTCGEK--ADPEKAVDYILEQF 100 (139)
T ss_pred HHHHHHcCCeE-EE-----EEEEEcCCCcEEEEEEeccceEEEEecccCC--eEEEEEEecCCC--CCHHHHHHHHHHHh
Confidence 44455566443 23 4678999999999999999999999999975 555544332221 36889999999999
Q ss_pred cCCeEEEEEEecC
Q 041801 288 KPATMSVSTTCTS 300 (343)
Q Consensus 288 ~P~~f~~tl~~~~ 300 (343)
+|++..++.+..+
T Consensus 101 ~~~~~~~~~l~RG 113 (139)
T PRK04025 101 KAKYAHVSEIKRG 113 (139)
T ss_pred CCCeEEEEEEeCC
Confidence 9999999887653
No 7
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=94.52 E-value=0.062 Score=44.61 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=57.0
Q ss_pred HHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVF 287 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F 287 (343)
.+..+..|+..+ .+.-+.|+|=|+|.=++.++...+||.=||.++-++-.=|... .+...+++.+.+.|
T Consensus 25 ~~a~~~~g~~~~------~~~~~~f~p~GvT~~~ll~ESHisiHTwPE~~~~avDiftC~~-----~~p~~a~~~l~~~f 93 (106)
T PF02675_consen 25 RDAAKAAGLTVL------SISFHKFEPQGVTGVALLAESHISIHTWPEHGYAAVDIFTCGE-----FDPEKAIEYLKKAF 93 (106)
T ss_dssp HHHHHHCT-EEE------EEEEEE-SSS-EEEEEEETTEEEEEEEEGGGTEEEEEEEEEST-----HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEE------EEEEEEcCCCcEEEEEEhhccEEEEEeCCCcCeEEEEEEEcCC-----CCHHHHHHHHHHHh
Confidence 444455565443 2367889999999999999999999999999954444334333 37889999999999
Q ss_pred cCCeEEEEEE
Q 041801 288 KPATMSVSTT 297 (343)
Q Consensus 288 ~P~~f~~tl~ 297 (343)
+|++..++..
T Consensus 94 ~~~~~~~~~i 103 (106)
T PF02675_consen 94 KPDKVKITEI 103 (106)
T ss_dssp T-SEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 9999998754
No 8
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=94.23 E-value=0.15 Score=44.97 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=61.9
Q ss_pred HHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVF 287 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F 287 (343)
.+..+..|.. ++. +..+.|+|=|+|.-+|......+||.=||.+ ||.+.-=..... .+....++.+.+.|
T Consensus 44 ~~Aa~~~gat-iv~-----~~~h~F~P~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg~~--~~p~~a~~~L~~~l 113 (139)
T PRK02770 44 TEAAKRAGAT-LLN-----LITHRFEPQGVTALALLAESHISIHTWPESG--YAAVDVFTCGDH--TMPEKACQYLIEEL 113 (139)
T ss_pred HHHHHHcCCE-EEE-----EEeEEcCCCeEEEEEEecccEEEEEeCcCCC--cEEEEEEecCCC--CCHHHHHHHHHHHh
Confidence 4455556643 333 4678999999999999999999999999975 555554322221 36889999999999
Q ss_pred cCCeEEEEEEec
Q 041801 288 KPATMSVSTTCT 299 (343)
Q Consensus 288 ~P~~f~~tl~~~ 299 (343)
+|++..++-+..
T Consensus 114 ~~~~~~~~~~~R 125 (139)
T PRK02770 114 MAKRHSLRSIER 125 (139)
T ss_pred CCCeEEEEEEec
Confidence 999999987654
No 9
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=93.65 E-value=0.22 Score=42.99 Aligned_cols=83 Identities=22% Similarity=0.371 Sum_probs=62.5
Q ss_pred HHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVF 287 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F 287 (343)
.+..+..|.. ++. +..+.|+|=|.|.=+|......+||.=||.+ ||++.-=..... .++...++.+.+.|
T Consensus 33 ~~aa~~~g~t-iv~-----~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg~~--~~p~~a~~~L~~~l 102 (123)
T PRK01706 33 VEAADLSGAH-VLN-----VSTKEFDPQGVTVLVLLSESHLSIHTYPEKN--FAAIDCYTCGTT--VEPQIAIDYIVSIL 102 (123)
T ss_pred HHHHHHcCCe-EEE-----EEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecCCC--CCHHHHHHHHHHHh
Confidence 4444455643 333 4678999999999999999999999999976 666665333221 47889999999999
Q ss_pred cCCeEEEEEEecC
Q 041801 288 KPATMSVSTTCTS 300 (343)
Q Consensus 288 ~P~~f~~tl~~~~ 300 (343)
+|++..++....+
T Consensus 103 ~~~~~~~~~~~RG 115 (123)
T PRK01706 103 KPNEMHIKRLIRG 115 (123)
T ss_pred CCCeEEEEEEecC
Confidence 9999998876543
No 10
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=93.42 E-value=0.25 Score=42.83 Aligned_cols=83 Identities=18% Similarity=0.128 Sum_probs=62.7
Q ss_pred HHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVF 287 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F 287 (343)
.+..+.+|.. ++. +..+.|+|=|.|.=+|......+||.=||.+ ||.+.-=..... .++...++.+.+.|
T Consensus 31 ~~a~~~~g~t-il~-----~~~h~F~p~GvTgv~llaESHisIHTwPE~g--yaavDiftCg~~--~~p~~a~~~L~~~f 100 (127)
T PRK03124 31 VDAALEAGAE-VRE-----VAFHKFSPQGVSGVVVISESHLTIHTWPELG--YAAVDVFTCGDR--VDPWDACNYIAEGL 100 (127)
T ss_pred HHHHHHcCCe-EEE-----EEeEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecCCC--CCHHHHHHHHHHHh
Confidence 4445556653 333 4778999999999999999999999999975 566654333221 46888999999999
Q ss_pred cCCeEEEEEEecC
Q 041801 288 KPATMSVSTTCTS 300 (343)
Q Consensus 288 ~P~~f~~tl~~~~ 300 (343)
+|++..++.+..+
T Consensus 101 ~~~~~~~~~~~RG 113 (127)
T PRK03124 101 GAKTREAIELKRG 113 (127)
T ss_pred CCCeEEEEEEecC
Confidence 9999998877543
No 11
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=92.77 E-value=0.42 Score=41.75 Aligned_cols=83 Identities=12% Similarity=0.181 Sum_probs=62.4
Q ss_pred HHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVF 287 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F 287 (343)
.+..+..|.. ++. +..+-|+|=|.|.=+|......+||.=||.+ ||++..=..... .+....++-+.+.|
T Consensus 32 ~~aa~~~g~t-iv~-----~~~h~F~p~GvTgv~lLaESHisIHTwPE~g--yaavDiftCg~~--~~p~~a~~~L~~~f 101 (131)
T PRK01236 32 EGAVKYAELT-KIS-----SHYYQFNPHGATGVVLLAESHISIHTWPEYG--LVTLDVYTCGDP--SKADKAFEYIIKKL 101 (131)
T ss_pred HHHHHHCCCE-EEE-----EEEEEcCCCcEEEEEEeeccEEEEEeCccCC--eEEEEEEecCCC--CCHHHHHHHHHHHh
Confidence 4455556643 333 4668899999999999999999999999965 566654333221 36888999999999
Q ss_pred cCCeEEEEEEecC
Q 041801 288 KPATMSVSTTCTS 300 (343)
Q Consensus 288 ~P~~f~~tl~~~~ 300 (343)
+|++..++-+..+
T Consensus 102 ~~~~~~~~~l~RG 114 (131)
T PRK01236 102 KPKRVDHKVLERG 114 (131)
T ss_pred CCCeEEEEEEecC
Confidence 9999999877653
No 12
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=92.54 E-value=0.52 Score=40.89 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=60.5
Q ss_pred HHHHHHhCCccccCCCCccccccccCC-CcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDP-CGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQV 286 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~P-CGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~ 286 (343)
.++.+..|..- +. +.-+.|+| =|+|.=+|......+||.=||.++ |.+.-=..... .++...++.+.+.
T Consensus 42 ~~aa~~~g~ti-l~-----~~~h~F~p~~GvT~v~lLaESHisIHTwPE~gy--aavDiftCg~~--~~p~~a~~~L~~~ 111 (127)
T PRK00458 42 KEAAKIANMTL-LD-----IKSWKFGKKGGVSVIALVLESHIAIHTWPEYNF--ATVDVYTCGEH--TDPQKAFEYIVSK 111 (127)
T ss_pred HHHHHHcCCEE-EE-----EEEEECCCCCCEEEEEEecccEEEEEeCcCCCc--EEEEEEecCCC--CCHHHHHHHHHHH
Confidence 44445555433 22 46688998 899999999999999999999765 55543222221 3688999999999
Q ss_pred ccCCeEEEEEEec
Q 041801 287 FKPATMSVSTTCT 299 (343)
Q Consensus 287 F~P~~f~~tl~~~ 299 (343)
|+|++..++.+..
T Consensus 112 f~~~~~~~~~~~R 124 (127)
T PRK00458 112 LKPKRYTVNYADR 124 (127)
T ss_pred hCCCEEEEEEEec
Confidence 9999999987754
No 13
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=85.11 E-value=1.5 Score=38.70 Aligned_cols=68 Identities=26% Similarity=0.308 Sum_probs=56.2
Q ss_pred cccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEE
Q 041801 226 IICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTT 297 (343)
Q Consensus 226 ~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~ 297 (343)
.+.-+.|.|=|=|-=.|.....-|||.=||-+ ||..+.-.... +.++..-++-+++-|+|.++++-..
T Consensus 53 ~~~~~~f~p~GvSgvvliaESHitiHTwPEyg--~A~iDVyTCG~--~~~p~~A~~yi~~~L~p~~v~v~~~ 120 (136)
T COG1586 53 NIAFHKFSPQGVSGVVLIAESHITIHTWPEYG--YATIDVYTCGD--HIDPLKAFNYLVEQLKPKRVTVDYR 120 (136)
T ss_pred EEEeEEecCCCeEEEEEEEeeeeeEecCCccC--ceEEEEEccCC--CCCHHHHHHHHHHHhCCcEEEEEEE
Confidence 36778899999999999999999999999998 88888644332 2468888999999999999998544
No 14
>PRK05462 S-adenosylmethionine decarboxylase; Provisional
Probab=82.83 E-value=4.7 Score=39.17 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=55.3
Q ss_pred ccccccCCCcccccccCCC---------------------------ceEEEEecCCCC----Ce--eEEEeeccCCCCCh
Q 041801 227 ICDFAFDPCGYSMNGVDGD---------------------------RYSTIHVTPEDG----FS--YASFECVGSVYDDH 273 (343)
Q Consensus 227 id~f~F~PCGYSmNgi~~~---------------------------~Y~TIHVTPE~~----~S--YaSFETN~~~~~~~ 273 (343)
|.-+-|+|=|=|..+|..+ ...|||.=||.+ ++ ||....-....
T Consensus 68 i~~qdf~PqGvSvtvLIsE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITVHTwPE~hp~~GiatFrAdIDVfTCG~--- 144 (266)
T PRK05462 68 IARQDYEPQGASVTILISEEPVDPKLIDKSEHPGPLPETVVAHLDKSHITVHTYPESHPEGGICTFRADIDVSTCGV--- 144 (266)
T ss_pred eeeeecCCCCEEEEEEEecccccccccccccccCCCccchhcccccceEEEEcCCCCCCCCCccceeeEEEEEcCCC---
Confidence 5668899999999887665 899999999984 44 56666544432
Q ss_pred hhHHHHHHHHhhcccCCeEEEEEEec
Q 041801 274 DEVAQMLKRVVQVFKPATMSVSTTCT 299 (343)
Q Consensus 274 ~~~~~li~~Vl~~F~P~~f~~tl~~~ 299 (343)
.++...++-+.+.|+|.+.++.....
T Consensus 145 isPlkAl~yLi~sF~sd~vtidy~vR 170 (266)
T PRK05462 145 ISPLKALNYLIHSFESDIVTIDYRVR 170 (266)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEEec
Confidence 46888899999999999999987765
No 15
>TIGR03331 SAM_DCase_Eco S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form. Members of this protein family are the single chain precursor of the S-adenosylmethionine decarboxylase as found in Escherichia coli. This form shows a substantially different architecture from the form shared by the Archaea, Bacillus, and many other species (TIGR03330). It shows little or no similarity to the form found in eukaryotes (TIGR00535).
Probab=71.18 E-value=17 Score=35.25 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=54.3
Q ss_pred ccccccCCCcccccccCCC---------------------------ceEEEEecCCCC--Cee----EEEeeccCCCCCh
Q 041801 227 ICDFAFDPCGYSMNGVDGD---------------------------RYSTIHVTPEDG--FSY----ASFECVGSVYDDH 273 (343)
Q Consensus 227 id~f~F~PCGYSmNgi~~~---------------------------~Y~TIHVTPE~~--~SY----aSFETN~~~~~~~ 273 (343)
|.-+.|+|=|=|...|..+ ...|||.=||.+ -.| |..+.-....
T Consensus 64 i~~qdf~PqGvSvtvLIaE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITIHTwPE~hp~~Gi~tFrAdIDVfTCG~--- 140 (259)
T TIGR03331 64 IARQDYEPQGASVTILISEEPVEPEKIDNSESPGPLPDAVVAHLDKSHITVHTYPESHPDNGISTFRADIDVSTCGV--- 140 (259)
T ss_pred eeeeecCCCCEEEEEEEeccccccccccccccCCCCccchhcccccCeEEEEcCCCCCCCCCccceeEEEEEecCCC---
Confidence 5668899999999888655 899999999984 234 5555444332
Q ss_pred hhHHHHHHHHhhcccCCeEEEEEEec
Q 041801 274 DEVAQMLKRVVQVFKPATMSVSTTCT 299 (343)
Q Consensus 274 ~~~~~li~~Vl~~F~P~~f~~tl~~~ 299 (343)
.++...++-+.+.|+|.+.++.....
T Consensus 141 isPlkAl~yLi~sf~sd~vtidy~vR 166 (259)
T TIGR03331 141 ISPLKALNYLIHSFESDIVTIDYRVR 166 (259)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEEec
Confidence 46888899999999999999987765
No 16
>PRK05462 S-adenosylmethionine decarboxylase; Provisional
Probab=33.87 E-value=2.6e+02 Score=27.48 Aligned_cols=98 Identities=22% Similarity=0.379 Sum_probs=68.1
Q ss_pred HHHHHHHhccCcEEeeeecCcc----e-eeeeecC---------------------------ceeEE--eCCe-------
Q 041801 40 ESLQEVLDAVQCTVVSAVGNQY----F-DAYVLSE---------------------------SSLFV--YPTK------- 78 (343)
Q Consensus 40 ~~w~~~L~~a~C~IlS~~sn~~----~-DAYvLSE---------------------------SSLFV--~~~k------- 78 (343)
+-+.++.+.++++||+...-+. + =.-|+|| |=+=| ||..
T Consensus 52 ~IL~eaa~~iGAtILni~~qdf~PqGvSvtvLIsE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITVHTwPE~hp~~Gia 131 (266)
T PRK05462 52 EILTEVCSIIGANILNIARQDYEPQGASVTILISEEPVDPKLIDKSEHPGPLPETVVAHLDKSHITVHTYPESHPEGGIC 131 (266)
T ss_pred HHHHHHHHHcCCEEeeeeeeecCCCCEEEEEEEecccccccccccccccCCCccchhcccccceEEEEcCCCCCCCCCcc
Confidence 4567777889999999765432 1 1346677 75554 7765
Q ss_pred -----EEEeccCchhhhhhHHHHHHHHhhcCceeeeeEeccccccCCCCCCCCCCC-hHHHHHHHHhhCCC
Q 041801 79 -----IIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTS-FKEEVFYLEENLPI 143 (343)
Q Consensus 79 -----iILKTCGTTtLL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~s-f~~Ev~~L~~~F~~ 143 (343)
|=+-|||....++|+..|+ +.++-++..+.|-++-|...-.-. +- ..+++.-++.|.+.
T Consensus 132 tFrAdIDVfTCG~isPlkAl~yLi---~sF~sd~vtidy~vRGftrdv~G~---k~fidh~i~sIq~~i~~ 196 (266)
T PRK05462 132 TFRADIDVSTCGVISPLKALNYLI---HSFESDIVTIDYRVRGFTRDINGK---KHFIDHEINSIQNFISE 196 (266)
T ss_pred ceeeEEEEEcCCCCCHHHHHHHHH---HHhCCCeEEEEEEecCCccCCCCe---EeeccCccHHHHhhcCH
Confidence 4689999999999999999 556667777888877765443322 33 45677777777764
No 17
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.49 E-value=98 Score=28.34 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=32.4
Q ss_pred eEEEeccCchh---hhhhH--HHHHHHHhhcCceeeeeEeccccccCCCC
Q 041801 78 KIIIKTCGTTQ---LLKSI--RPLVDYAHDLNLTLCACRYTRGSFIFPKS 122 (343)
Q Consensus 78 kiILKTCGTTt---LL~~l--~~ll~la~~~g~~v~~v~YsRknf~fP~~ 122 (343)
+-+.-|||||. |+.|+ +..++-..+.|+.=-.+-|-|.++.+|+.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~ 53 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDP 53 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCH
Confidence 45667999997 45555 56666667889876667888988766653
No 18
>TIGR03331 SAM_DCase_Eco S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form. Members of this protein family are the single chain precursor of the S-adenosylmethionine decarboxylase as found in Escherichia coli. This form shows a substantially different architecture from the form shared by the Archaea, Bacillus, and many other species (TIGR03330). It shows little or no similarity to the form found in eukaryotes (TIGR00535).
Probab=28.66 E-value=3.7e+02 Score=26.33 Aligned_cols=98 Identities=19% Similarity=0.385 Sum_probs=68.0
Q ss_pred HHHHHHHhccCcEEeeeecCcc----ee-eeeecC---------------------------ceeEE--eCCe-------
Q 041801 40 ESLQEVLDAVQCTVVSAVGNQY----FD-AYVLSE---------------------------SSLFV--YPTK------- 78 (343)
Q Consensus 40 ~~w~~~L~~a~C~IlS~~sn~~----~D-AYvLSE---------------------------SSLFV--~~~k------- 78 (343)
+-+.++.+.++++||+...-+. +- .-|+|| |=+=| ||..
T Consensus 48 ~IL~eaa~~iGAtILni~~qdf~PqGvSvtvLIaE~~~~~~~~~~~~~~gp~~~~vvahLdkSHITIHTwPE~hp~~Gi~ 127 (259)
T TIGR03331 48 QILTDVAEIIGANILNIARQDYEPQGASVTILISEEPVEPEKIDNSESPGPLPDAVVAHLDKSHITVHTYPESHPDNGIS 127 (259)
T ss_pred HHHHHHHHHcCCEEeeeeeeecCCCCEEEEEEEeccccccccccccccCCCCccchhcccccCeEEEEcCCCCCCCCCcc
Confidence 3566777889999999765432 22 356677 65544 7765
Q ss_pred -----EEEeccCchhhhhhHHHHHHHHhhcCceeeeeEeccccccCCCCCCCCCCC-hHHHHHHHHhhCCC
Q 041801 79 -----IIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTS-FKEEVFYLEENLPI 143 (343)
Q Consensus 79 -----iILKTCGTTtLL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~s-f~~Ev~~L~~~F~~ 143 (343)
|=+-|||....++|+..|+ +.++-++..+-|-++-|...-.-. +- ..+++.-++.|.+.
T Consensus 128 tFrAdIDVfTCG~isPlkAl~yLi---~sf~sd~vtidy~vRGftRdi~g~---k~fidh~i~siq~~i~~ 192 (259)
T TIGR03331 128 TFRADIDVSTCGVISPLKALNYLI---HSFESDIVTIDYRVRGFTRDIDGR---KHFIDHKINSIQNYISE 192 (259)
T ss_pred ceeEEEEEecCCCCCHHHHHHHHH---HHhCCCeEEEEEEecCCCCCCCce---EeeccCccHHHHhhccH
Confidence 3589999999999999999 555657777888888776443322 33 45677777777764
No 19
>PF13619 KTSC: KTSC domain
Probab=24.54 E-value=72 Score=23.66 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=26.3
Q ss_pred CCcccceEEEEEeecCCCCCcccCCCCCCcccCHHHHHHHHhc
Q 041801 6 GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDA 48 (343)
Q Consensus 6 ~FEG~EK~LEI~F~~~~~~~~~~~~~~~LR~i~r~~w~~~L~~ 48 (343)
++.-..+.|||.|.. + ..---..+|...|+.++.+
T Consensus 10 ~Yd~~~~~L~V~F~~-G-------~~Y~Y~~Vp~~~~~~l~~A 44 (60)
T PF13619_consen 10 GYDPETRTLEVEFKS-G-------SVYRYFGVPPEVYEALLNA 44 (60)
T ss_pred eECCCCCEEEEEEcC-C-------CEEEECCCCHHHHHHHHcC
Confidence 677778999999952 1 1234458999999999874
No 20
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=21.42 E-value=92 Score=32.89 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhhcCce-ee-eeEeccccccCCCCCCC
Q 041801 91 KSIRPLVDYAHDLNLT-LC-ACRYTRGSFIFPKSQPF 125 (343)
Q Consensus 91 ~~l~~ll~la~~~g~~-v~-~v~YsRknf~fP~~Q~~ 125 (343)
.||..-+.+|..+|.+ +. ...|.||||+.|++-++
T Consensus 56 ~av~~Ai~~~~aLnc~i~~~~s~FdRK~YfYpDlPkG 92 (478)
T TIGR00133 56 EAVKKAIKLALALNSQINQPISVFDRKHYFYPDLPKG 92 (478)
T ss_pred HHHHHHHHHHHHcCCEecCcceEEeccccccCCCCCC
Confidence 3555566666778888 66 89999999999987663
No 21
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=45 Score=30.11 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=59.0
Q ss_pred CceeEEeCCeEEEeccCchhhhhhHHHHHHHHhhcCce---------eeeeEeccccccCCCCCCCCCCC-hHHHHHHHH
Q 041801 69 ESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLT---------LCACRYTRGSFIFPKSQPFPHTS-FKEEVFYLE 138 (343)
Q Consensus 69 ESSLFV~~~kiILKTCGTTtLL~~l~~ll~la~~~g~~---------v~~v~YsRknf~fP~~Q~~pH~s-f~~Ev~~L~ 138 (343)
|-|-|+-+++++|+--..++|.+-=.+|+.+...+.++ ..++.|+|--|-+|.+--..|.+ |.+|.+.++
T Consensus 35 eGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~~~~vrKK~tf~Rdk~e~d~~~~eihGNi~d~efkl~d 114 (159)
T COG4894 35 EGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGTVCEVRKKVTFSRDKFEIDGLNWEIHGNIWDDEFKLTD 114 (159)
T ss_pred eeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCCCEEEEEEEEEEEeeeEEEcCCCeEEecceeceEEEEec
Confidence 47899999999999999999999989999887755432 57889999999999999999999 888776543
No 22
>KOG4120 consensus G/T mismatch-specific thymine DNA glycosylase [Replication, recombination and repair]
Probab=20.12 E-value=45 Score=33.80 Aligned_cols=14 Identities=43% Similarity=0.956 Sum_probs=11.7
Q ss_pred cccCCCcccccccC
Q 041801 230 FAFDPCGYSMNGVD 243 (343)
Q Consensus 230 f~F~PCGYSmNgi~ 243 (343)
-.=+|||+|.|||.
T Consensus 367 cs~~~~g~s~~gli 380 (426)
T KOG4120|consen 367 CSSEPCGFSSNGLI 380 (426)
T ss_pred CCCCCCcccccCce
Confidence 34589999999996
Done!