Query 041801
Match_columns 343
No_of_seqs 110 out of 303
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jl0_A Adometdc, S-adenosylmet 100.0 6E-122 2E-126 892.1 33.7 318 4-342 4-330 (334)
2 1mhm_A Adometdc, samdc, S-aden 100.0 3E-98 1E-102 714.1 23.6 262 70-341 1-266 (288)
3 1mhm_B Adometdc, samdc, S-aden 99.9 1.5E-27 5.1E-32 184.8 6.6 62 6-69 11-72 (72)
4 1vr7_A Adometdc, samdc, S-aden 94.0 0.079 2.7E-06 45.6 5.7 100 190-299 22-124 (142)
5 2iii_A S-adenosylmethionine de 94.0 0.067 2.3E-06 45.6 5.2 82 208-299 32-113 (135)
6 2k6g_A Replication factor C su 36.5 54 0.0019 26.3 5.2 36 33-69 43-78 (109)
7 2ebu_A Replication factor C su 26.3 91 0.0031 25.2 5.0 38 32-70 32-69 (112)
8 3vk8_A Probable formamidopyrim 21.5 12 0.00041 35.3 -1.5 76 32-128 189-291 (295)
9 1mhx_A Immunoglobulin-binding 18.9 2.6E+02 0.009 20.4 5.5 47 60-110 7-53 (65)
10 2iii_A S-adenosylmethionine de 17.7 4.3E+02 0.015 21.9 8.4 80 39-121 28-120 (135)
No 1
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=100.00 E-value=6.2e-122 Score=892.14 Aligned_cols=318 Identities=34% Similarity=0.532 Sum_probs=281.5
Q ss_pred CCCCcccceEEEEEeecCCCCCcccC-CCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCceeEEeCCeEEEe
Q 041801 4 SAGFEGFEKRLELHFFGDDPLNNLID-NEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIK 82 (343)
Q Consensus 4 ~~~FEG~EK~LEI~F~~~~~~~~~~~-~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK 82 (343)
+.+|||+||||||||.++.+ .++ +..|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||
T Consensus 4 ~~~FEG~EKrLEI~F~~~~~---~~~~~~~~LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIlK 80 (334)
T 1jl0_A 4 AHFFEGTEKLLEVWFSRQQP---DANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILK 80 (334)
T ss_dssp -CCCCCCCEEEEEEEECCC--------CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEE
T ss_pred CCCCcccceEEEEEEecCCc---cccCCCCccccCCHHHHHHHHHhcCCEEEEeecccccceEEeccceeeEECCEEEEE
Confidence 35999999999999986421 111 34569999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhhHHHHHHHHhh-cCc-eeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCceEEccCCCCCC
Q 041801 83 TCGTTQLLKSIRPLVDYAHD-LNL-TLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASH 160 (343)
Q Consensus 83 TCGTTtLL~~l~~ll~la~~-~g~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ay~~g~~~~~~ 160 (343)
||||||||+|||+||++|++ +|+ .|++|+||||||+||+.|++||++|+|||++|+++|++ |+||+||+.+ +|
T Consensus 81 TCGTT~LL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~eEv~~L~~~F~~----G~aY~~G~~~-~~ 155 (334)
T 1jl0_A 81 TCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPN----GAGYCMGRMN-SD 155 (334)
T ss_dssp ECTTCCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCSS----EEEEEESCTT-SS
T ss_pred eCCCCcHHHHHHHHHHHHHHhcCccceeEEEEcccCCCCcccCCCccCCHHHHHHHHHHhcCC----CcEEEeCCCC-CC
Confidence 99999999999999999976 699 69999999999999999999999999999999999986 8999998875 89
Q ss_pred cEEEEecCCccccccccccCCCCCceeeeeeeccCchhhh----hCCCCcHHHHHHHhCCccccCCCCccccccccCCCc
Q 041801 161 SWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMA----KNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCG 236 (343)
Q Consensus 161 hW~ly~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a----~~~~~~~~~~t~~sgi~~l~p~~~~~id~f~F~PCG 236 (343)
|||||+++..... ...++|+|||||||+||+++| +..+.+|++||+.+||++|+| +++||||+|+|||
T Consensus 156 hw~ly~~~~~~~~------~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~a~~~t~~sgi~~i~P--~~~iddf~F~PCG 227 (334)
T 1jl0_A 156 CWYLYTLDFPESR------VISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP--GSVIDATMFNPCG 227 (334)
T ss_dssp CEEEEEECCC---------CCCSCCEEEEEEEESCCHHHHGGGBCBTTBCHHHHHHHTTCTTSSS--SCEEEEEECSSBC
T ss_pred eeEEEecCCcccc------cCCCCcceEEEEccCCCHHHHhhhhcCcCCcHHHHHHHhChhhcCC--CcEeeccccCCcc
Confidence 9999999765431 123689999999999999999 467789999999999999999 9999999999999
Q ss_pred ccccccCC-CceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCCccccccccccC-CC
Q 041801 237 YSMNGVDG-DRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIE-PL 314 (343)
Q Consensus 237 YSmNgi~~-~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~~~~~~~~~~~~-~~ 314 (343)
||||||.+ ++|+|||||||++|||||||||++.. ++.+||+|||++|+|++|+||+|++..+.+......++ ++
T Consensus 228 YSmNgi~~~~~Y~TIHVTPE~~~SYaSFETN~~~~----~~~~lv~~Vl~~F~P~~fsvt~f~~~~~~~~~~~~~~~~~~ 303 (334)
T 1jl0_A 228 YSMNGMKSDGTYWTIAITPEPEFSYVSFETNLSQT----SYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIE 303 (334)
T ss_dssp EEEEEECTTSCEEEEEEECCTTSCEEEEEECCCCS----CSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCT
T ss_pred ceeccccCCCeEEEEEecCCCCCeeEEEEcCcccc----cHHHHHHHHHheeCCCeEEEEEEcCCccccchhhhcccCCC
Confidence 99999995 59999999999999999999999874 68899999999999999999999997776655544555 89
Q ss_pred CceecceeeeeCCCCceEEEEEeeeccc
Q 041801 315 GLKCRSCVMDEFPAAGSVVFQTFTATRR 342 (343)
Q Consensus 315 gY~~~~~~~~~f~~~~~l~y~~f~~~~~ 342 (343)
||+|+||++++|++ |+|+|++|+|...
T Consensus 304 gy~~~d~~~~~~~~-y~l~y~~f~r~~~ 330 (334)
T 1jl0_A 304 GFKRLDCQSAMFND-YNFVFTSFAKKQQ 330 (334)
T ss_dssp TEEEEEEEEEECSS-EEEEEEEEEECC-
T ss_pred CcEeccceEEecCC-eEEEEEEEEEccc
Confidence 99999999999995 7999999988654
No 2
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=100.00 E-value=3e-98 Score=714.05 Aligned_cols=262 Identities=44% Similarity=0.726 Sum_probs=226.2
Q ss_pred ceeEEeCCeEEEeccCchhhhhhHHHHHHHHhhcCceeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCc
Q 041801 70 SSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRK 149 (343)
Q Consensus 70 SSLFV~~~kiILKTCGTTtLL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ 149 (343)
|||||||+|||||||||||||+|||+||++|+++|++|++|+||||||+||+.|++||++|+|||++|+++|++++.+|+
T Consensus 1 SSLFV~~~kiIlKTCGTT~LL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~~~~~G~ 80 (288)
T 1mhm_A 1 XSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSK 80 (288)
T ss_dssp -CEEEETTEEEEEEETTSCGGGGHHHHHHHHHHTTCCEEEEEEEECC-----------CCHHHHHHHHHHHHTTSTTCEE
T ss_pred CCccccCCEEEEEeCCCccHHHHHHHHHHHHHHcCCceEEEEEecccCCCcccCCCCcCCHHHHHHHHHHHhcccCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987666799
Q ss_pred eEEccCCCCCCcEEEEecCCccccccccccCCCCCceeeeeeeccCchhhh----hCCCCcHHHHHHHhCCccccCCCCc
Q 041801 150 ASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMA----KNGDTAGKEMTELTGIGGINPNPNS 225 (343)
Q Consensus 150 ay~~g~~~~~~hW~ly~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a----~~~~~~~~~~t~~sgi~~l~p~~~~ 225 (343)
||+||+++++||||||+++.... ...++|+|||||||+||+++| +..+++|.+||+.+||++|+| ++
T Consensus 81 aY~~G~~~~~~~W~lY~~~~~~~-------~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~sa~~~t~~sGi~~i~P--~~ 151 (288)
T 1mhm_A 81 AVIMGSPDKTQKWHVYSASAGSV-------QSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILP--KS 151 (288)
T ss_dssp EEEESSSCSSCCEEEEEEESCCC-------CCSSCCCEEEEEEEEECHHHHHTTSCCSSCCHHHHHHHHTGGGTST--TS
T ss_pred eEEeCCCCCCCceEEEeCCCCcc-------cCCCCcceEEEeecCCCHHHHHhhhccccccHHHHHHHhChhhcCC--Cc
Confidence 99999999899999999874321 123589999999999999998 467889999999999999999 99
Q ss_pred cccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCCcccc
Q 041801 226 IICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWT 305 (343)
Q Consensus 226 ~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~~~~~ 305 (343)
+||||+|+|||||||||.|++|+|||||||++|||||||||+..... .++.+||+|||++|+|++|+||+|++..+...
T Consensus 152 ~iddf~F~PCGYSmNgi~g~~Y~TIHVTPE~~~SYaSFETn~~~~~~-~~~~~lv~~Vl~~F~P~~fsvt~~~~~~~~~~ 230 (288)
T 1mhm_A 152 EICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKT-MELGPLVERVLACFEPAEFSVALHADVATKLL 230 (288)
T ss_dssp EEEEEECSSSCEEEEEEETTEEEEEEEECCTTSCEEEEEEESCCTTT-SCHHHHHHHHHHHHCEEEEEEEEEESSCHHHH
T ss_pred EeeccccCCccceeccccCCceEEEEeCCCCCCeeEEEEecCCCccc-ccHHHHHHHHHheeCCCEEEEEEEecccchhh
Confidence 99999999999999999999999999999999999999998832221 58999999999999999999999998765554
Q ss_pred ccccccCCCCceecceeeeeCCCCceEEEEEeeecc
Q 041801 306 RVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATR 341 (343)
Q Consensus 306 ~~~~~~~~~gY~~~~~~~~~f~~~~~l~y~~f~~~~ 341 (343)
.......++||+|.|++.++|++||+|+|++|++..
T Consensus 231 ~~~~~~~~~gy~~~~~~~~~l~~gy~l~y~~f~~~~ 266 (288)
T 1mhm_A 231 ERICSVDVKGYSLAEWSPEEFGEGGSIVYQKFTRTP 266 (288)
T ss_dssp HHHHCCCCTTEEEEEEEEEECGGGCEEEEEEEEEC-
T ss_pred hhhccCCcCCCeEcccEEEECCCCcEEEEEEEeccC
Confidence 444456789999999999999988899999998753
No 3
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=99.94 E-value=1.5e-27 Score=184.85 Aligned_cols=62 Identities=48% Similarity=0.767 Sum_probs=49.9
Q ss_pred CCcccceEEEEEeecCCCCCcccCCCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecC
Q 041801 6 GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSE 69 (343)
Q Consensus 6 ~FEG~EK~LEI~F~~~~~~~~~~~~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 69 (343)
+|||+||||||||.++. .+.+++..|||+|||++|++||+.|+|+|||+++|+++|||||||
T Consensus 11 ~FEG~EK~LEI~F~~~~--~~~~~~~~gLR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 72 (72)
T 1mhm_B 11 GFEGFEKRLEISFVEPG--LFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSE 72 (72)
T ss_dssp ----CEEEEEEEECCCC--CC----CCCGGGCCHHHHHHHHHHHTCEEEEEEECSSCEEEEEEC
T ss_pred CcccceEEEEEEEecCC--ccCCCCcCccccCCHHHHHHHHhhcCCEEEEEecCCcceeEEecC
Confidence 89999999999997542 223356789999999999999999999999999999999999998
No 4
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=93.99 E-value=0.079 Score=45.61 Aligned_cols=100 Identities=22% Similarity=0.173 Sum_probs=70.1
Q ss_pred eeeccCchhhhhCCC---CcHHHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeec
Q 041801 190 ICMTELDRTMAKNGD---TAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECV 266 (343)
Q Consensus 190 ilMt~Ld~~~a~~~~---~~~~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN 266 (343)
+=+|+-+++...+.. ..-.+..+..|..-+ + +.-+.|+|=|+|.=+|..+...+||.=||.+ ||+...=
T Consensus 22 ~DlygC~~~~L~D~e~l~~~l~eAa~~~gatvl----~--~~~h~F~P~GvSgvvllaESHIsIHTwPE~g--yAavDVf 93 (142)
T 1vr7_A 22 AEFYECDREVLDNVQLIEQEMKQAAYESGATIV----T--STFHRFLPYGVSGVVVISESHLTIHTWPEYG--YAAIDLF 93 (142)
T ss_dssp EEEESCCHHHHTCHHHHHHHHHHHHHHHTCCEE----E--EEEEECSSSCEEEEEEETTEEEEEEEEGGGT--EEEEEEE
T ss_pred EEEcCCChHHCCCHHHHHHHHHHHHHHcCCEEe----E--EEEEEcCCCCeEEEEEecccEEEEEeCCCCC--eEEEEEE
Confidence 335666666552111 223444555565433 2 3557889999999999999999999999999 5665543
Q ss_pred cCCCCChhhHHHHHHHHhhcccCCeEEEEEEec
Q 041801 267 GSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCT 299 (343)
Q Consensus 267 ~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~ 299 (343)
..... .++...++-+.+.|+|++..++....
T Consensus 94 tCg~~--~~P~~a~~~L~~~f~a~~~~~~~~~R 124 (142)
T 1vr7_A 94 TCGED--VDPWKAFEHLKKALKAKRVHVVEHER 124 (142)
T ss_dssp EESTT--CCHHHHHHHHHHHHTCSEEEEEEEEE
T ss_pred ccCCC--CCHHHHHHHHHHHhCCCeEEEEEEeC
Confidence 32221 36889999999999999999987764
No 5
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=93.97 E-value=0.067 Score=45.62 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=61.3
Q ss_pred HHHHHHhCCccccCCCCccccccccCCCcccccccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcc
Q 041801 208 KEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVF 287 (343)
Q Consensus 208 ~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmNgi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F 287 (343)
.+..+..|..-+ + +.-+.|+|=|+|.=+|.....-+||.=||.+ ||+...=.... ..++...++-+.+.|
T Consensus 32 ~~aa~~~gatvl----~--~~~h~F~P~GvSgvvllaESHisIHTwPE~g--yaavDvftCg~--~~~P~~a~~~l~~~f 101 (135)
T 2iii_A 32 EGAVKYANLTKI----S--SHYYQFQPHGATGVVLLAESHISIHTWPEHG--LATVDVYTCGD--PSKAYRAMDYIITQL 101 (135)
T ss_dssp HHHHHHTTCCEE----E--EEEEECSSSCEEEEEEEC-CEEEEEEEGGGT--EEEEEEEEESC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEE----E--EEEEEcCCCCeEEEEEecccEEEEEeCCCCC--cEEEEEEccCC--CCCHHHHHHHHHHHh
Confidence 445555565444 2 3467889999999999999999999999999 56655433222 147889999999999
Q ss_pred cCCeEEEEEEec
Q 041801 288 KPATMSVSTTCT 299 (343)
Q Consensus 288 ~P~~f~~tl~~~ 299 (343)
+|++..++....
T Consensus 102 ~a~~~~~~~~~R 113 (135)
T 2iii_A 102 NPKRIDKQVHER 113 (135)
T ss_dssp CCSEEEEEEEEE
T ss_pred CCCeEEEEEEeC
Confidence 999999987764
No 6
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=36.48 E-value=54 Score=26.27 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=30.4
Q ss_pred CCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecC
Q 041801 33 GLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSE 69 (343)
Q Consensus 33 ~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSE 69 (343)
.|..++|++|.++++..+.++.+.++. ..|-.|..|
T Consensus 43 ~l~~~~R~e~~~~i~~~Gg~v~~sVSk-kTd~LV~G~ 78 (109)
T 2k6g_A 43 VLESIERDEAKSLIERYGGKVTGNVSK-KTNYLVMGR 78 (109)
T ss_dssp BCSSCCHHHHHHHHHHTTCEEESSCCT-TCCEEEECB
T ss_pred eCCCCCHHHHHHHHHHcCCEeeCcccC-CceEEEECC
Confidence 466789999999999999999998875 667777776
No 7
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.32 E-value=91 Score=25.18 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCc
Q 041801 32 MGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSES 70 (343)
Q Consensus 32 ~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSES 70 (343)
..|..++|++|.++++..+.++.+.++. ..|-.|..|.
T Consensus 32 G~l~~~~R~e~~~~i~~~Ggkv~~sVSk-kTd~LV~G~~ 69 (112)
T 2ebu_A 32 GVLESIERDEAKSLIERYGGKVTGNVSK-KTNYLVMGRD 69 (112)
T ss_dssp SCCSSSCHHHHHHHHHHTTCEECSSCCS-SCCEEEECSS
T ss_pred eeCCCCCHHHHHHHHHHcCCEEeccccC-CeeEEEecCC
Confidence 3566889999999999999999998875 6677777763
No 8
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=21.50 E-value=12 Score=35.32 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeec---------------------CceeEEeCCeEEEeccCchhhh
Q 041801 32 MGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLS---------------------ESSLFVYPTKIIIKTCGTTQLL 90 (343)
Q Consensus 32 ~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLS---------------------ESSLFV~~~kiILKTCGTTtLL 90 (343)
.-.++|++++|+.+.+.+.--+-..+....++.|+=. ..+|.||.++ =+-|||
T Consensus 189 ~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~~~~~~~~g~~G~~~~~~~~~~~~~~~~~~~~~VYgR~--g~PCG~---- 262 (295)
T 3vk8_A 189 KLGSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKK--KDPNGN---- 262 (295)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHHHHHHHCSCSSTTGGGHHHHTTSCCCCCSTTCCCSSSSCCCSSTTCS--BCTTSC----
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHhCCCcceecCCCCcccccccccccccccccccceEEEeCCC--CCCCCC----
Confidence 4456899999999999877655544545546655422 5678888763 223533
Q ss_pred hhHHHHHHHHhhcCceeeeeEe------ccccccCCCCCCCCCC
Q 041801 91 KSIRPLVDYAHDLNLTLCACRY------TRGSFIFPKSQPFPHT 128 (343)
Q Consensus 91 ~~l~~ll~la~~~g~~v~~v~Y------sRknf~fP~~Q~~pH~ 128 (343)
.|....+ .|..|+.|..|+..|.
T Consensus 263 ---------------~I~~~~~~~~~~~~R~t~~CP~CQ~~~~~ 291 (295)
T 3vk8_A 263 ---------------KVIADKIIGSGKNKRTTYWAPAIQKLEHH 291 (295)
T ss_dssp ---------------BCEEEECSCCTTCCCEEEECTTTCBCC--
T ss_pred ---------------cEEEEEecCCCCCCCccEECCCCCCCccc
Confidence 4666666 7999999999998875
No 9
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=18.87 E-value=2.6e+02 Score=20.37 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=37.3
Q ss_pred cceeeeeecCceeEEeCCeEEEeccCchhhhhhHHHHHHHHhhcCceeeee
Q 041801 60 QYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCAC 110 (343)
Q Consensus 60 ~~~DAYvLSESSLFV~~~kiILKTCGTTtLL~~l~~ll~la~~~g~~v~~v 110 (343)
-.||.|.| ..|-.+|+++.|--..-.-.|=..+-+.|...|++-+|.
T Consensus 7 hamdtykl----fivigdrvvvt~tkavdaatAeq~FrqYan~NgvdgeWs 53 (65)
T 1mhx_A 7 HAMDTYKL----FIVIGDRVVVVTTEAVDAATAEKVFKQYANDNGVDGEWT 53 (65)
T ss_dssp CCCEEEEE----EEEETTEEEEEEEEESSHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cccceeeE----EEEEcCEEEEEEeehhhHHHHHHHHHHHhhccCCccEEE
Confidence 45888875 467889999988777777777788899999999887764
No 10
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus}
Probab=17.68 E-value=4.3e+02 Score=21.86 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=52.7
Q ss_pred HHHHHHHHhccCcEEeeeecC----ccee-eeeecCce--eEEeCCe----EEEeccCc-hhhhhhHHHHHHHHhhcCce
Q 041801 39 FESLQEVLDAVQCTVVSAVGN----QYFD-AYVLSESS--LFVYPTK----IIIKTCGT-TQLLKSIRPLVDYAHDLNLT 106 (343)
Q Consensus 39 r~~w~~~L~~a~C~IlS~~sn----~~~D-AYvLSESS--LFV~~~k----iILKTCGT-TtLL~~l~~ll~la~~~g~~ 106 (343)
+....+..+.++++|++...- ..+- .-||+||= +=.||.. +=+=|||. +....++..|.+ .++-+
T Consensus 28 ~~~l~~aa~~~gatvl~~~~h~F~P~GvSgvvllaESHisIHTwPE~gyaavDvftCg~~~~P~~a~~~l~~---~f~a~ 104 (135)
T 2iii_A 28 RELLEGAVKYANLTKISSHYYQFQPHGATGVVLLAESHISIHTWPEHGLATVDVYTCGDPSKAYRAMDYIIT---QLNPK 104 (135)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECSSSCEEEEEEEC-CEEEEEEEGGGTEEEEEEEEESCHHHHHHHHHHHHH---HHCCS
T ss_pred HHHHHHHHHHcCCEEEEEEEEEcCCCCeEEEEEecccEEEEEeCCCCCcEEEEEEccCCCCCHHHHHHHHHH---HhCCC
Confidence 567888899999999997642 1121 24899995 4557764 66889999 488888888884 44433
Q ss_pred -eeeeEeccccccCCC
Q 041801 107 -LCACRYTRGSFIFPK 121 (343)
Q Consensus 107 -v~~v~YsRknf~fP~ 121 (343)
+..-...|+.+--+.
T Consensus 105 ~~~~~~~~RG~~~~~~ 120 (135)
T 2iii_A 105 RIDKQVHERGIVEEES 120 (135)
T ss_dssp EEEEEEEEEEEECSSC
T ss_pred eEEEEEEeCCCccccc
Confidence 444455565554443
Done!