BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041802
         (223 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0CVT0|EIF3C_ASPTN Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
           terreus (strain NIH 2624 / FGSC A1156) GN=nip1 PE=3 SV=1
          Length = 864

 Score = 31.6 bits (70), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 58  YLDAETTESSLFTNTSSESATASFSTASEECSNGDPVETVIRGL---RSERLFFEPGETS 114
           Y++  + E  L+TN       A   T SE+    DP +  +  +   R E ++F+P +  
Sbjct: 390 YIERLSDEKELYTNLVRTQVYAEALTTSEK---SDPRQDSLNRVIMRRLEHIYFKPAQVV 446

Query: 115 SILEEAKTSGFP 126
           +ILEE      P
Sbjct: 447 TILEEGTWKSLP 458


>sp|Q5F488|MAGI3_CHICK Membrane-associated guanylate kinase, WW and PDZ domain-containing
           protein 3 OS=Gallus gallus GN=MAGI3 PE=2 SV=1
          Length = 1128

 Score = 30.8 bits (68), Expect = 7.5,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 21  SSSW--PWPSCHQTRT-LSFRNYNDNNSTNGAMFKTINLAYLDAET---TESSLFTNTSS 74
           SS W  P PS +QT + + FRNY   + T   + K   +AY D       + +  T T  
Sbjct: 265 SSDWMKPVPSYNQTSSSMDFRNYMSRDETLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWL 324

Query: 75  ESATASFSTASEECSNGD 92
           +      + A E+C +G+
Sbjct: 325 DPRLCKKAKAPEDCEDGE 342


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.124    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,438,912
Number of Sequences: 539616
Number of extensions: 2709000
Number of successful extensions: 6833
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6811
Number of HSP's gapped (non-prelim): 41
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)