Query 041802
Match_columns 223
No_of_seqs 136 out of 226
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 18:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nsz_A Programmed cell death p 80.8 2.3 7.9E-05 33.0 5.0 47 140-188 2-48 (129)
2 2ion_A PDCD4, programmed cell 80.4 2.5 8.4E-05 34.0 5.1 49 139-189 3-51 (152)
3 2rg8_A Programmed cell death p 78.2 3.7 0.00013 33.2 5.6 48 140-189 5-52 (165)
4 2zu6_B Programmed cell death p 51.7 20 0.0007 31.7 5.3 49 139-189 160-208 (307)
5 2zzd_C Thiocyanate hydrolase s 47.7 15 0.0005 32.5 3.6 49 140-188 23-74 (243)
6 1ug3_A EIF4GI, eukaryotic prot 46.3 29 0.00098 30.5 5.4 44 140-186 6-50 (339)
7 2zu6_B Programmed cell death p 46.1 20 0.00069 31.7 4.4 44 143-188 1-44 (307)
8 2bzb_A Conserved domain protei 45.5 16 0.00056 25.6 3.0 35 143-177 12-52 (62)
9 2c0s_A Conserved domain protei 45.4 28 0.00094 24.6 4.2 35 142-176 11-51 (64)
10 1ugp_A NitrIle hydratase alpha 45.3 20 0.00067 31.0 4.0 51 138-188 13-64 (203)
11 3a8g_A NitrIle hydratase subun 41.5 21 0.00072 30.9 3.6 51 138-188 16-67 (207)
12 3eiq_C Programmed cell death p 39.6 23 0.0008 32.2 3.8 46 142-189 51-96 (358)
13 3eiq_C Programmed cell death p 34.8 42 0.0014 30.5 4.7 49 138-188 210-258 (358)
14 3bqs_A Uncharacterized protein 31.0 1E+02 0.0036 22.8 5.6 43 146-189 14-58 (93)
15 3mab_A Uncharacterized protein 27.1 60 0.0021 24.2 3.7 29 146-174 14-44 (93)
16 3hht_B NitrIle hydratase beta 25.7 86 0.0029 27.1 4.9 33 140-172 72-104 (229)
17 2xwv_A Sialic acid-binding per 24.1 28 0.00097 29.8 1.5 49 129-180 263-311 (312)
18 3a7m_A Flagellar protein FLIT; 23.0 1.7E+02 0.0059 22.5 5.7 54 140-193 10-71 (122)
19 1wqb_A Aptotoxin VII; spider'S 22.9 24 0.00081 22.0 0.6 9 22-30 12-20 (32)
20 3hht_A NitrIle hydratase alpha 21.4 75 0.0026 27.6 3.6 46 143-188 27-73 (216)
21 3nkz_A Flagellar protein FLIT; 20.1 1.2E+02 0.0041 23.5 4.2 34 140-173 13-46 (123)
No 1
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=80.85 E-value=2.3 Score=32.97 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHH
Q 041802 140 PYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVD 188 (223)
Q Consensus 140 Py~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~d 188 (223)
|-++|++.|..+|.|-= .-.|++|-..|.-.||.+.+|..+|+-.+.
T Consensus 2 p~eel~kki~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~ 48 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIV 48 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 67889999999998832 124889999999999999888866654433
No 2
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=80.39 E-value=2.5 Score=33.96 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHHH
Q 041802 139 DPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVDL 189 (223)
Q Consensus 139 DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~dl 189 (223)
.|-.+|++.|..+|.|-= .-.|++|-..|.-.||.+.+|..+|.-.+.+
T Consensus 3 ~~~eel~kki~~lL~EY~--~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~ 51 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVM 51 (152)
T ss_dssp CCCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 577899999999998831 1248899999999999998887776654433
No 3
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=78.17 E-value=3.7 Score=33.24 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHHH
Q 041802 140 PYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVDL 189 (223)
Q Consensus 140 Py~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~dl 189 (223)
+-++|++.+..+|.|-= .-.|++|.+.|.-.||.+.+|..+|+..+.+
T Consensus 5 s~ee~~kk~~~ii~EYf--~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~ 52 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYF--EHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 52 (165)
T ss_dssp SHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCSGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 45789999999998831 1237899999999999999999888776543
No 4
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.75 E-value=20 Score=31.69 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHHH
Q 041802 139 DPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVDL 189 (223)
Q Consensus 139 DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~dl 189 (223)
-|-.+|++-|..++.|--. -.|++|-..|.-.||.|.+|+.+|+-.+..
T Consensus 160 ~~~eelkkki~~lL~EY~~--~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~ 208 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLL--SGDISEAEHCLKELEVPHFHHELVYEAIIM 208 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 4678999999999998421 138999999999999999988777655443
No 5
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=47.74 E-value=15 Score=32.54 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=38.1
Q ss_pred hhHHHHH---HHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHH
Q 041802 140 PYVDFKK---SMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVD 188 (223)
Q Consensus 140 Py~DFR~---SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~d 188 (223)
+..+|.. -++++..++|+.+.+++++++..|-+..+..=-++|-+|.+|
T Consensus 23 ~~~~~~~~~~AL~~lL~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~D 74 (243)
T 2zzd_C 23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLD 74 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCC
Confidence 3445555 899999999999999999999999999444445566666554
No 6
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.34 E-value=29 Score=30.49 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHccCCCChhhHHHHH
Q 041802 140 PYVDFKKSMVEMVEAH-GLKDWEDLEELLCWYLRMNGKSNHGYIVGAF 186 (223)
Q Consensus 140 Py~DFR~SM~EMI~e~-gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF 186 (223)
+-++|++-|..+|.|- ..+ |++|-+.|.-.||.+.+|..+|.-.
T Consensus 6 s~ee~~k~~~~ll~Ey~~~~---d~~Ea~~ci~el~~p~~~~~~v~~~ 50 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHLN---DMKEAVQCVQELASPSLLFIFVRHG 50 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHcCCcccHHHHHHHH
Confidence 3467888888888873 222 6778999999999997777665544
No 7
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.11 E-value=20 Score=31.73 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHH
Q 041802 143 DFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVD 188 (223)
Q Consensus 143 DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~d 188 (223)
+|++-+..+|.|-= .-.|++|.+.|.-.||.+.+|..+++-.+.
T Consensus 1 e~~k~~~~ii~EYf--~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~ 44 (307)
T 2zu6_B 1 AFEKTLTPIIQEYF--EHGDTNEVAEMLRDLNLGEMKSGVPVLAVS 44 (307)
T ss_dssp CHHHHHHHHHHHHH--HHCCHHHHHHHHHTTCCGGGGGGHHHHHHH
T ss_pred ChHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 47777888887721 123889999999999999999998887654
No 8
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=45.50 E-value=16 Score=25.64 Aligned_cols=35 Identities=29% Similarity=0.565 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCCChh------hHHHHHHHHHHccCCC
Q 041802 143 DFKKSMVEMVEAHGLKDWE------DLEELLCWYLRMNGKS 177 (223)
Q Consensus 143 DFR~SM~EMI~e~gi~d~~------dLeELL~cYL~LN~~~ 177 (223)
.=|+-|++.+...|+.+.+ +|-.||..|..+..+.
T Consensus 12 ~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~~ 52 (62)
T 2bzb_A 12 NKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVKDKV 52 (62)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4588899999999987765 7889999999987653
No 9
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=45.43 E-value=28 Score=24.61 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCCChh------hHHHHHHHHHHccCC
Q 041802 142 VDFKKSMVEMVEAHGLKDWE------DLEELLCWYLRMNGK 176 (223)
Q Consensus 142 ~DFR~SM~EMI~e~gi~d~~------dLeELL~cYL~LN~~ 176 (223)
+.=|+-|.+.+...|+.+.+ +|-+||..|..+..+
T Consensus 11 E~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~ 51 (64)
T 2c0s_A 11 EAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELKTK 51 (64)
T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34588899999999998866 788999999987543
No 10
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=45.27 E-value=20 Score=30.96 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=42.0
Q ss_pred cChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc-cCCCChhhHHHHHHH
Q 041802 138 QDPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRM-NGKSNHGYIVGAFVD 188 (223)
Q Consensus 138 ~DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~L-N~~~~H~~Iv~AF~d 188 (223)
..+..++-+-++++..++|+.+.+++++++..|-+- .+..=-++|-+|.+|
T Consensus 13 ~~~~~~r~~AL~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~D 64 (203)
T 1ugp_A 13 QKEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCC
Confidence 346788889999999999999999999999999998 444445666777665
No 11
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=41.53 E-value=21 Score=30.87 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=41.5
Q ss_pred cChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc-cCCCChhhHHHHHHH
Q 041802 138 QDPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRM-NGKSNHGYIVGAFVD 188 (223)
Q Consensus 138 ~DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~L-N~~~~H~~Iv~AF~d 188 (223)
.++..++-+-++++..++|+.+.+++++++..|-+- .+..=-++|-+|.+|
T Consensus 16 ~~~~~~r~~Al~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~D 67 (207)
T 3a8g_A 16 QAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 67 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCC
Confidence 456789999999999999999999999999999998 444445566666554
No 12
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.64 E-value=23 Score=32.16 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHHH
Q 041802 142 VDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVDL 189 (223)
Q Consensus 142 ~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~dl 189 (223)
++|++-...+|.|- ..-.+++|.+.|.-.||.+.+|..+++-.+.+
T Consensus 51 ee~~k~~~~ii~EY--f~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHH--HHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 79999999999883 22357899999999999999999888876654
No 13
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.84 E-value=42 Score=30.49 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=38.6
Q ss_pred cChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHH
Q 041802 138 QDPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVD 188 (223)
Q Consensus 138 ~DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~d 188 (223)
..|-+++++-|...|.|-- ...|++|-..|.-.||.+.+|..+|+-.+.
T Consensus 210 ~~~veelkkki~~lL~EY~--~s~D~~EA~~ci~EL~~p~fhhe~V~~av~ 258 (358)
T 3eiq_C 210 QQPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIV 258 (358)
T ss_dssp SSCHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHCCTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 4688999999999988842 235889999999999999888766654443
No 14
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=30.99 E-value=1e+02 Score=22.80 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCChhhHHHH--HHHHHHccCCCChhhHHHHHHHH
Q 041802 146 KSMVEMVEAHGLKDWEDLEEL--LCWYLRMNGKSNHGYIVGAFVDL 189 (223)
Q Consensus 146 ~SM~EMI~e~gi~d~~dLeEL--L~cYL~LN~~~~H~~Iv~AF~dl 189 (223)
..|++|...-||.+.++|+++ ..+|+.|-......-| ..|-.|
T Consensus 14 ~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~-~~L~aL 58 (93)
T 3bqs_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCM-SELYAL 58 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCH-HHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCH-HHHHHH
Confidence 468999999999999999987 7899999876443333 444444
No 15
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=27.12 E-value=60 Score=24.20 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCCChhhHHHH--HHHHHHcc
Q 041802 146 KSMVEMVEAHGLKDWEDLEEL--LCWYLRMN 174 (223)
Q Consensus 146 ~SM~EMI~e~gi~d~~dLeEL--L~cYL~LN 174 (223)
.-|++|..+-||.+.++|+++ ..+|+.|-
T Consensus 14 ~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk 44 (93)
T 3mab_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRIW 44 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHHH
Confidence 458999999999999999998 78898883
No 16
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=25.74 E-value=86 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH
Q 041802 140 PYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLR 172 (223)
Q Consensus 140 Py~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~ 172 (223)
=|+-....|+.|++++|+.+.++|++...-||.
T Consensus 72 YYe~WL~ale~lLvekGvit~~EL~~r~~~~~~ 104 (229)
T 3hht_B 72 YYGHWIATVAYNLVDTGVLDEKELDERTEVFSK 104 (229)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhcc
Confidence 388899999999999999999999999999986
No 17
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=24.12 E-value=28 Score=29.83 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=31.5
Q ss_pred CceEEEeeccChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChh
Q 041802 129 ESLVCSMESQDPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHG 180 (223)
Q Consensus 129 ~svAV~~~S~DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~ 180 (223)
.+|-|... | ...||+-+..+..+-.-.....-++||.-|+..|+.+||+
T Consensus 263 ~G~~v~~~--~-~~~~~~a~~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (312)
T 2xwv_A 263 QGVKITHP--D-LVPFKESMKPYYAEFVKQTGQKGESALKQIEAINPHHHHH 311 (312)
T ss_dssp TTCEEECC--C-SHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCSCC--
T ss_pred CCCEEecc--C-HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhCcccccC
Confidence 34555432 2 4778888888776531111235678999999999998886
No 18
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=23.04 E-value=1.7e+02 Score=22.55 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc--------cCCCChhhHHHHHHHHHHHh
Q 041802 140 PYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRM--------NGKSNHGYIVGAFVDLLVAL 193 (223)
Q Consensus 140 Py~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~L--------N~~~~H~~Iv~AF~dl~~~L 193 (223)
=|..-..--.+|+++-.-.+||.|-+|=.-|+.+ -+......+..-..+++..+
T Consensus 10 ~Yq~i~~lS~~ML~aA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~I 71 (122)
T 3a7m_A 10 RWQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQT 71 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 3677777888999998889999999999999875 23344566666666666554
No 19
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=22.93 E-value=24 Score=21.97 Aligned_cols=9 Identities=44% Similarity=1.763 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 041802 22 SSWPWPSCH 30 (223)
Q Consensus 22 ~~W~wPsC~ 30 (223)
-+|.||-|.
T Consensus 12 gpwewpccs 20 (32)
T 1wqb_A 12 GPWEWPCCS 20 (32)
T ss_dssp CSSSSCBCT
T ss_pred CCccCcccc
Confidence 479999885
No 20
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=21.36 E-value=75 Score=27.59 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHc-cCCCChhhHHHHHHH
Q 041802 143 DFKKSMVEMVEAHGLKDWEDLEELLCWYLRM-NGKSNHGYIVGAFVD 188 (223)
Q Consensus 143 DFR~SM~EMI~e~gi~d~~dLeELL~cYL~L-N~~~~H~~Iv~AF~d 188 (223)
.--+-++++..++|+.+.+.+++++..|-.- .+..=-++|-+|..|
T Consensus 27 ~r~~Al~~ll~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~D 73 (216)
T 3hht_A 27 ARAKALESLLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 73 (216)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 4456788999999999999999999999755 555555677777655
No 21
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=20.08 E-value=1.2e+02 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc
Q 041802 140 PYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRM 173 (223)
Q Consensus 140 Py~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~L 173 (223)
=|..--..-.+|+++-.-.+|+.|-+|=..|+.+
T Consensus 13 ~Y~~il~lS~~ML~aA~~gdWD~Lv~lE~~y~~l 46 (123)
T 3nkz_A 13 EYQQILTLSEQMLVLATEGNWDALVDLEMTYLKA 46 (123)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 3677777788999999999999999999999864
Done!