Query 041802
Match_columns 223
No_of_seqs 136 out of 226
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 18:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041802.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041802hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 74.9 1.2 8.8E-05 32.8 3.6 48 140-189 2-49 (129)
2 d1ug3a1 a.118.1.14 (A:1235-142 62.8 5.2 0.00038 30.8 5.2 45 142-189 7-52 (193)
3 d1ugpa_ d.149.1.1 (A:) Cobalt- 46.1 6.4 0.00047 31.9 3.1 45 145-189 20-65 (203)
4 d1v29a_ d.149.1.1 (A:) Cobalt- 41.2 6.8 0.00049 31.8 2.5 50 139-188 10-63 (203)
5 d2qdya1 d.149.1.1 (A:10-206) I 35.9 14 0.001 29.7 3.7 52 137-188 6-58 (197)
6 d2eiaa1 a.28.3.1 (A:148-222) E 27.1 33 0.0024 22.9 3.9 38 137-177 10-51 (75)
7 d1v29b_ b.34.4.4 (B:) Cobalt-c 22.7 63 0.0046 25.7 5.5 41 139-179 71-111 (229)
8 d1bm9a_ a.4.5.7 (A:) Replicati 21.2 64 0.0047 23.7 4.8 48 145-192 18-65 (120)
9 d1iqpa1 a.80.1.1 (A:233-327) R 21.1 74 0.0054 21.0 4.9 59 139-197 17-76 (95)
10 d3c8ya2 d.15.4.2 (A:1-126) Fe- 18.8 63 0.0046 23.4 4.3 47 124-171 63-117 (126)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=74.90 E-value=1.2 Score=32.84 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHHH
Q 041802 140 PYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVDL 189 (223)
Q Consensus 140 Py~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~dl 189 (223)
|-..+++.|..||.|-- +-.|++|.+.|.-.||.+.+|..+|...+.+
T Consensus 2 pv~~l~kk~~~ll~EY~--~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ 49 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVM 49 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 44568899999998843 3457888899999999998887766555443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.85 E-value=5.2 Score=30.80 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHccCCCChhhHHHHHHHH
Q 041802 142 VDFKKSMVEMVEAH-GLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVDL 189 (223)
Q Consensus 142 ~DFR~SM~EMI~e~-gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~dl 189 (223)
++|++-+..+|.|- .. .|+.|.+.|.-.||.+.+|..+|...+..
T Consensus 7 ee~~kk~~~il~Ey~~~---~D~~Ea~~~l~el~~p~~~~~~V~~~i~~ 52 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLHL---NDMKEAVQCVQELASPSLLFIFVRHGVES 52 (193)
T ss_dssp HHHHHHHHHHHHHHHHH---CCHHHHHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC---CCHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 58888888888872 22 26788899999999998887776655443
No 3
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=46.10 E-value=6.4 Score=31.95 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHH-ccCCCChhhHHHHHHHH
Q 041802 145 KKSMVEMVEAHGLKDWEDLEELLCWYLR-MNGKSNHGYIVGAFVDL 189 (223)
Q Consensus 145 R~SM~EMI~e~gi~d~~dLeELL~cYL~-LN~~~~H~~Iv~AF~dl 189 (223)
-+-+++...++|+.+.+++.+++..|-+ +.+..=-++|-+|.+|-
T Consensus 20 vkAle~lLieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp 65 (203)
T d1ugpa_ 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDP 65 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCH
Confidence 3567888889999999999999999997 66766677888887763
No 4
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=41.19 E-value=6.8 Score=31.78 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=39.7
Q ss_pred ChhHHH---HHHHHHHHHHcCCCChhhHHHHHHHHHH-ccCCCChhhHHHHHHH
Q 041802 139 DPYVDF---KKSMVEMVEAHGLKDWEDLEELLCWYLR-MNGKSNHGYIVGAFVD 188 (223)
Q Consensus 139 DPy~DF---R~SM~EMI~e~gi~d~~dLeELL~cYL~-LN~~~~H~~Iv~AF~d 188 (223)
.|..|| -+.|++...|+|+.+.+++++++..|-+ +++..==++|-+|.+|
T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 355554 4678888899999999999999999997 5776667777777655
No 5
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=35.88 E-value=14 Score=29.65 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=42.3
Q ss_pred ccChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHc-cCCCChhhHHHHHHH
Q 041802 137 SQDPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRM-NGKSNHGYIVGAFVD 188 (223)
Q Consensus 137 S~DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~L-N~~~~H~~Iv~AF~d 188 (223)
..+|..+=-+-|+++..++|+.+.+++.+++..|-+= .+..=-++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 3567888889999999999999999999999999876 344445677777665
No 6
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=27.15 E-value=33 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.397 Sum_probs=28.2
Q ss_pred ccChhHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHccCCC
Q 041802 137 SQDPYVDFKKSMVEMVEAHGL----KDWEDLEELLCWYLRMNGKS 177 (223)
Q Consensus 137 S~DPy~DFR~SM~EMI~e~gi----~d~~dLeELL~cYL~LN~~~ 177 (223)
..+||+||...+.+-++.... ..| ..+.| +|-+.|+..
T Consensus 10 pkEpf~dfVdRl~~a~~~~~~~~~~k~~-~~~~L--~~qNANpdC 51 (75)
T d2eiaa1 10 AKEPYPEFVDRLLSQIKSEGHPQEISKF-LTDTL--TIQNANEEC 51 (75)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCHHHHHH-HHHHH--HHHTSCTTT
T ss_pred CCCCHHHHHHHHHHHHHhhcCcHhHHHH-HHHHH--hHhcCCHHH
Confidence 478999999999999988643 344 33444 588888765
No 7
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=22.67 E-value=63 Score=25.75 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=35.1
Q ss_pred ChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCCh
Q 041802 139 DPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNH 179 (223)
Q Consensus 139 DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H 179 (223)
+=|+-....|+.+++++|+.+.++|++-...+..--....|
T Consensus 71 sYYe~Wl~ale~lLvekG~it~~EL~~r~~~~~a~p~~~~~ 111 (229)
T d1v29b_ 71 SYYGHWIATVAYNLLETGVLDEKELEDRTQAFMEKPDTKIQ 111 (229)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCTTCCCC
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcccCCccccc
Confidence 45899999999999999999999999999999886544443
No 8
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=21.25 E-value=64 Score=23.69 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHccCCCChhhHHHHHHHHHHH
Q 041802 145 KKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKSNHGYIVGAFVDLLVA 192 (223)
Q Consensus 145 R~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~~H~~Iv~AF~dl~~~ 192 (223)
+-.|+-||+.+......-|++|-.-|--+-=+-.|--|-+|..||..+
T Consensus 18 KlYlit~~eq~r~YG~q~L~~Lr~eFk~~Gy~P~hsEiYraLHeL~~d 65 (120)
T d1bm9a_ 18 KLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDD 65 (120)
T ss_dssp HHHHHHHHHTTCCBSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHT
T ss_pred HhhhhhhhhhccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999999999999863
No 9
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.06 E-value=74 Score=20.97 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHccCCC-ChhhHHHHHHHHHHHhhcCC
Q 041802 139 DPYVDFKKSMVEMVEAHGLKDWEDLEELLCWYLRMNGKS-NHGYIVGAFVDLLVALAFAN 197 (223)
Q Consensus 139 DPy~DFR~SM~EMI~e~gi~d~~dLeELL~cYL~LN~~~-~H~~Iv~AF~dl~~~L~s~~ 197 (223)
+.+.+=++-+.+++.++|+.--+-|.+|-...++++-++ ....|+...+++-..|..+.
T Consensus 17 ~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~~~~~~~~k~~ll~~la~~d~rL~~G~ 76 (95)
T d1iqpa1 17 GNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGA 76 (95)
T ss_dssp TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 457777888899999999988888888877776666333 34567888888777776654
No 10
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=18.83 E-value=63 Score=23.41 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=33.6
Q ss_pred CCCCCCceEEEeeccChhHHHHHHHHHHHHHcCCCC-----hh---hHHHHHHHHH
Q 041802 124 GFPYKESLVCSMESQDPYVDFKKSMVEMVEAHGLKD-----WE---DLEELLCWYL 171 (223)
Q Consensus 124 ~~~~~~svAV~~~S~DPy~DFR~SM~EMI~e~gi~d-----~~---dLeELL~cYL 171 (223)
..+..+++.|...|+. -.+.|+-++|+|.+++-.| .. +|+++..-|-
T Consensus 63 ~t~v~~GM~V~T~s~~-v~~~Rr~~le~ll~~H~~dC~~C~~~g~CeLq~~~~~yg 117 (126)
T d3c8ya2 63 DTLIEDGMIINTNSDA-VNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYK 117 (126)
T ss_dssp GCBCCTTCEEESSCHH-HHHHHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHHHT
T ss_pred ccCCCCCCEEEeCCHH-HHHHHHHHHHHHHhcCCCcCCCCCCCCCcHHHHHHHHHC
Confidence 3567888988887765 5688999999998865322 11 7888877764
Done!