BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041804
(403 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 265/397 (66%), Positives = 325/397 (81%), Gaps = 5/397 (1%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
E L+CY+NDW++ALEFFNWVE + F HTT+T+N VIDILGK+FEF++SW LI+RM N
Sbjct: 52 EALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNT 111
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQ 121
S+PNH TFRI+FKRYVTAHLV EA+ ++KLD+F L+DE S+ NLVDALCE+KHV+EA+
Sbjct: 112 ESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDETSFYNLVDALCEHKHVVEAE 171
Query: 122 ELCFGENK-NVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSY 180
ELCFG+N GFS ++ TKI+N+ILRGW K+ WWGKC+E+W++MD GV KDL SY
Sbjct: 172 ELCFGKNVIGNGFS----VSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSY 227
Query: 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240
SIYMDIMCKSGKPWKAVKLYKEMK + +K+DVVAYNTVIRA+G S+GV+F +RV+REMRE
Sbjct: 228 SIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRE 287
Query: 241 MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG 300
GC+P+V T NT+IKLLCE+GR+R+AY +L EMPK+GC PD ITY C F LEKP EIL
Sbjct: 288 RGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEKPSEILS 347
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360
LF RMI SG+RPKMDTYVML+RKF RWGFL+PV VWK M+E G +PD AYNA++DALI
Sbjct: 348 LFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALI 407
Query: 361 DKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQGGL 397
KGMLDMAR+Y+EEM +GLS + R EL K + L
Sbjct: 408 QKGMLDMAREYEEEMIERGLSPRRRPELVEKSLDETL 444
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/405 (34%), Positives = 206/405 (50%), Gaps = 17/405 (4%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
E LS NDW+ A FF W + + Y+S+I ILGK +FD +W LI M+
Sbjct: 132 EILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFS 191
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVS-YCNLVDALCEYKHVIEA 120
S+ N T IM ++Y H V +A+ TF+ F L+ + + +L+ ALC YK+V +A
Sbjct: 192 PSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDA 251
Query: 121 QELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCRE---FWEEMDKRGVVKDL 177
L F F K +N++L GW + G RE W EM GV D+
Sbjct: 252 GHLIFCNKDKYPFDA-------KSFNIVLNGWCNV--IGSPREAERVWMEMGNVGVKHDV 302
Query: 178 HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYRE 237
SYS + K G K +KL+ MKK+ I+ D YN V+ A+ + V A + +
Sbjct: 303 VSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKT 362
Query: 238 MRE-MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPR 296
M E G +P+VVT N++IK LC+ + EA V EM +KG P + TYH F R L
Sbjct: 363 MEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGE 422
Query: 297 EILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALV 356
E+ L +M + G P ++TY+ML+RK RW V ++W +M+E PD +Y ++
Sbjct: 423 EVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMI 482
Query: 357 DALIDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQGGLDGEQ 401
L G ++ A Y +EM KG+ +P E + ++Q G+Q
Sbjct: 483 HGLFLNGKIEEAYGYYKEMKDKGM--RPNENV-EDMIQSWFSGKQ 524
>sp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200
OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1
Length = 523
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 193/390 (49%), Gaps = 11/390 (2%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
E ++ +DWK A V ++ YN ++D+LGK F+ + M
Sbjct: 114 EVVNRNRSDWKPAYILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRD 173
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE-VSYCNLVDALCEYKHVIEA 120
+ N T+ ++ RY AH V+EA+G F + EFG+ D+ V++ L+ LC YKHV A
Sbjct: 174 GFV-NEKTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFA 232
Query: 121 QELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSY 180
+ L + G K NMIL GW + + + FW+++ D+ SY
Sbjct: 233 ETLFCSRRREFGCD-------IKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSY 285
Query: 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240
++ + K GK KA++LY+ M DV N VI A+ + + A+ V+RE+ E
Sbjct: 286 GTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISE 345
Query: 241 MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG--CVPDVITYHCFFRCLEKPREI 298
G P+VVT N+++K LC+ R + + ++ EM KG C P+ +T+ + ++ +++
Sbjct: 346 KGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDV 405
Query: 299 LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDA 358
+ +RM ++ D Y ++ R + +W V +W +ME G PD+ Y +
Sbjct: 406 DIVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHG 465
Query: 359 LIDKGMLDMARKYDEEMFAKGLSAKPREEL 388
L KG + A Y +EM +KG+ +PR E+
Sbjct: 466 LHTKGKIGEALSYFQEMMSKGMVPEPRTEM 495
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 14/248 (5%)
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEAQEL 123
P+ ++ M + +AM + + + +V CN ++DALC K + EA E+
Sbjct: 280 PDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEV 339
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
F E G V YN +L+ K+ K E EEM+ +G +
Sbjct: 340 -FREISEKGPDPNV-----VTYNSLLKHLCKIRRTEKVWELVEEMELKG--GSCSPNDVT 391
Query: 184 MDIMCKSGKPWKAVKLYKE-MKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
+ K + K V + E M K +M YN + R + + ++ EM G
Sbjct: 392 FSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMERSG 451
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLF 302
P T I L G++ EA + EM KG VP+ T + KPR +
Sbjct: 452 LGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPRTEMLLNQNKTKPR----VE 507
Query: 303 DRMIESGI 310
D+M+ S +
Sbjct: 508 DKMLRSNL 515
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 126/393 (32%), Positives = 202/393 (51%), Gaps = 19/393 (4%)
Query: 14 ALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIM 73
A FF W F H+ ++Y+ +++ILG +F L W+ + ++ + F I+
Sbjct: 85 AHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIV 144
Query: 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEAQELCFGENKNVG 132
F+ Y A+L +EA FN++ EFG+K V + L+ +LC+ KHV AQE FG+ K G
Sbjct: 145 FRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEF-FGKAK--G 201
Query: 133 FSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192
F G+V KT Y++++RGW ++ R+ ++EM +R V DL +Y+ +D +CKSG
Sbjct: 202 F-GIVPSAKT--YSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGD 258
Query: 193 PWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNT 252
K+++EM G+K D ++ I A + V A +V M+ P+V T N
Sbjct: 259 VDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNH 318
Query: 253 VIKLLCENGRVREAYAVLAEMPKKGCVPD------VITYHCFFRCLEKPREILGLFDRMI 306
+IK LC+N +V +AY +L EM +KG PD ++ YHC + + ++L DR
Sbjct: 319 IIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDR-- 376
Query: 307 ESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI-DKGML 365
+ P TY M+L+ R G +W+ M E P Y ++ L+ KG L
Sbjct: 377 -TKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKL 435
Query: 366 DMARKYDEEMFAKGLS--AKPREELGTKLVQGG 396
+ A +Y E M +G+ + E L +LV G
Sbjct: 436 EEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWG 468
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 206/409 (50%), Gaps = 32/409 (7%)
Query: 13 RALEFFNWVETDCHFTH-TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFR 71
++L FFNW + + H + YN +ID+ GK +FDL+W+LI MK I + TF
Sbjct: 132 QSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEI-SIETFT 190
Query: 72 IMFKRYVTAHLVNEAMGTFNKLDEFG-LKDEVSYCNLVDALCEYKHVIEAQELCFGENKN 130
I+ +RYV A L +EA+ FN+++++G + D++++ ++ L + EAQ F K+
Sbjct: 191 ILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSF-FDSLKD 249
Query: 131 VGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190
++ +Y ++RGW + + + ++EM G+ ++++YSI +D +C+
Sbjct: 250 RFEPDVI------VYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRC 303
Query: 191 GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTC 250
G+ +A ++ +M G + + +N ++R + + ++VY +M+++GC+P +T
Sbjct: 304 GQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITY 363
Query: 251 NTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG---LFDRMIE 307
N +I+ C + + A VL M KK C + T++ FR +EK R++ G ++ +M+E
Sbjct: 364 NFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMME 423
Query: 308 SGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDM 367
+ P TY +L+R F V + K+M++ P+ Y LV G +
Sbjct: 424 AKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNN 483
Query: 368 ARKYDEEM-----FAKGLS--------------AKPREELGTKLVQGGL 397
A K +EM LS K EEL K++Q GL
Sbjct: 484 AYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 182/376 (48%), Gaps = 20/376 (5%)
Query: 9 NDWKRALEFFNWVETDCH-FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH 67
N +AL+FF++++ + H +++ IDI + W+LIHRM+ P+
Sbjct: 68 NHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIG-PSP 126
Query: 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFG-LKDEVSYCNLVDALCEYKHVIEAQELCFG 126
TF I+ +RY +A ++A+ F + E G +D S+ ++D LC+ K V +A EL
Sbjct: 127 KTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF-- 184
Query: 127 ENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186
G ++ T YN+IL GW + K E +EM +RG+ +L +Y+ +
Sbjct: 185 ----RALRGRFSVD-TVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKG 239
Query: 187 MCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS 246
++G+ A + + EMKK+ ++DVV Y TV+ GV+ + A V+ EM G PS
Sbjct: 240 FFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPS 299
Query: 247 VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG---LFD 303
V T N +I++LC+ V A + EM ++G P+V TY+ R L E L
Sbjct: 300 VATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQ 359
Query: 304 RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363
RM G P TY M++R + + +++KM C P+ YN L+ +
Sbjct: 360 RMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMF--- 416
Query: 364 MLDMARKYDEEMFAKG 379
RK E+M G
Sbjct: 417 ----VRKRSEDMVVAG 428
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 6/226 (2%)
Query: 160 KCREFWEEMDK--RGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNT 217
K +F+ +D R V D S+ + +DI + L M+ I +
Sbjct: 72 KALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAI 131
Query: 218 VIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG 277
V + D A++++ M E GC + + NT++ +LC++ RV +AY + + +
Sbjct: 132 VAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRF 191
Query: 278 CVPDVITYHCFFR--CL-EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334
V D +TY+ CL ++ + L + M+E GI P + TY +L+ F R G +R +
Sbjct: 192 SV-DTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAW 250
Query: 335 VVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
+ +M++ C D Y +V G + AR +EM +G+
Sbjct: 251 EFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGV 296
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 188/384 (48%), Gaps = 16/384 (4%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
+ L+ + N FF W E H+ H+ Y+ +I+ K ++ L W+LI+ M+
Sbjct: 105 DVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKK- 163
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE-VSYCNLVDALCEYKHVIEA 120
+ N TF I+ ++Y A V+EA+ FN ++++ L V++ L+ ALC+ K+V +A
Sbjct: 164 -KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKA 222
Query: 121 QELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSY 180
QE+ EN F+ +K Y+++L GW K K RE + EM G D+ +Y
Sbjct: 223 QEV--FENMRDRFTP-----DSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTY 275
Query: 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240
SI +DI+CK+G+ +A+ + + M K Y+ ++ G ++ A+ + EM
Sbjct: 276 SIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMER 335
Query: 241 MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL----EKPR 296
G + V N++I C+ R++ Y VL EM KG P+ + + R L EK
Sbjct: 336 SGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKD- 394
Query: 297 EILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALV 356
E +F +MI+ P DTY M+++ F + VWK M + G P ++ L+
Sbjct: 395 EAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLI 453
Query: 357 DALIDKGMLDMARKYDEEMFAKGL 380
+ L ++ A EEM G+
Sbjct: 454 NGLCEERTTQKACVLLEEMIEMGI 477
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 5/249 (2%)
Query: 140 NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKL 199
+ + Y+M++ K+ + + M K+ ++ ++ ++ I M ++ K +A+
Sbjct: 132 HSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKML-NVETFCIVMRKYARAQKVDEAIYA 190
Query: 200 YKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCE 259
+ M+K + ++VA+N ++ A+ S+ V A V+ MR+ P T + +++ +
Sbjct: 191 FNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRD-RFTPDSKTYSILLEGWGK 249
Query: 260 NGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILGLFDRMIESGIRPKMDT 316
+ +A V EM GC PD++TY L K E LG+ M S +P
Sbjct: 250 EPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFI 309
Query: 317 YVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMF 376
Y +L+ +G L + +ME G D +N+L+ A + + +EM
Sbjct: 310 YSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMK 369
Query: 377 AKGLSAKPR 385
+KG++ +
Sbjct: 370 SKGVTPNSK 378
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 11/247 (4%)
Query: 17 FFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKR 76
F ++ CH TY+ ++DIL K D + ++ M D P + ++
Sbjct: 260 FREMIDAGCH--PDIVTYSIMVDILCKAGRVDEALGIVRSM-DPSICKPTTFIYSVLVHT 316
Query: 77 YVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEAQELCFGENKNVGFSG 135
Y T + + EA+ TF +++ G+K +V+ N L+ A C+ + + E K+ G +
Sbjct: 317 YGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRV-LKEMKSKGVTP 375
Query: 136 LVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWK 195
+K N+ILR + + + + +M K D +Y++ + + C+ +
Sbjct: 376 -----NSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMFCEKKEMET 429
Query: 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255
A K++K M+KKG+ + ++ +I + A + EM EMG +PS VT + +
Sbjct: 430 ADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQ 489
Query: 256 LLCENGR 262
LL + R
Sbjct: 490 LLIKEER 496
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 124/281 (44%), Gaps = 11/281 (3%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C + + ++A E F + FT + TY+ +++ GK + + M D P
Sbjct: 214 CKSKNVRKAQEVFENMRD--RFTPDSKTYSILLEGWGKEPNLPKAREVFREMID-AGCHP 270
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELC 124
+ T+ IM A V+EA+G +D K Y LV + EA +
Sbjct: 271 DIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVD-T 329
Query: 125 FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYM 184
F E + G V ++N ++ + K + +EM +GV + S +I +
Sbjct: 330 FLEMERSGMKADV-----AVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIIL 384
Query: 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ 244
+ + G+ +A ++++M K + D Y VI+ + ++ A +V++ MR+ G
Sbjct: 385 RHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVF 443
Query: 245 PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY 285
PS+ T + +I LCE ++A +L EM + G P +T+
Sbjct: 444 PSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 484
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 198/402 (49%), Gaps = 19/402 (4%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
E L +N AL F W E F HTT YN++I+ LGK +F L W+L+ MK
Sbjct: 99 EVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMK--A 156
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEA 120
+ + TF ++ +RY A V EA+G F+K++EFG K E S N ++D L + ++V +A
Sbjct: 157 KKLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDA 216
Query: 121 QELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSY 180
Q++ F + K F + K Y ++L GW + + E EM G D+ +Y
Sbjct: 217 QKV-FDKMKKKRFEPDI-----KSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAY 270
Query: 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240
I ++ CK+ K +A++ + EM+++ K + ++I +G + ++ A+ + +
Sbjct: 271 GIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKS 330
Query: 241 MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY----HCFFRCLEKPR 296
G T N ++ C + R+ +AY + EM KG P+ TY H R +++ +
Sbjct: 331 SGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIR-MQRSK 389
Query: 297 EILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALV 356
E ++ M P + TY +++R F L +W +M+ G P +++L+
Sbjct: 390 EAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLI 446
Query: 357 DALIDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQGGLD 398
AL + LD A +Y EM G+ +P + ++L Q LD
Sbjct: 447 TALCHENKLDEACEYFNEMLDVGI--RPPGHMFSRLKQTLLD 486
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 35/242 (14%)
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVS-YCNLVDALCEYKHVIEAQEL 123
P+ + I+ + A EA+ FN++++ K +C+L++ L K + +A E
Sbjct: 265 PDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEF 324
Query: 124 CFGENKNVGF-------SGLV-----------------EMN------KTKIYNMILRGWF 153
F +K+ GF + LV EM + Y++IL
Sbjct: 325 -FERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLI 383
Query: 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVV 213
+M + E ++ M V +Y I + + C + A+K++ EMK KG+ +
Sbjct: 384 RMQRSKEAYEVYQTMSCEPTVS---TYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMH 440
Query: 214 AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEM 273
++++I A+ +D A + EM ++G +P + + + L + GR + ++ +M
Sbjct: 441 MFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKM 500
Query: 274 PK 275
+
Sbjct: 501 DR 502
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 186/376 (49%), Gaps = 16/376 (4%)
Query: 17 FFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKR 76
FF W + H+ + S++ IL K +F W LI M+ + F ++ +R
Sbjct: 117 FFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRR 176
Query: 77 YVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSG 135
+ +A++V +A+ +++ ++GL+ DE + L+DALC+ V EA ++ F
Sbjct: 177 FASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKV---------FED 227
Query: 136 LVEM--NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP 193
+ E + + +L GW + + +E +M + G+ D+ ++ + +GK
Sbjct: 228 MREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKM 287
Query: 194 WKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG-VDFAMRVYREMREMGCQPSVVTCNT 252
A L +M+K+G + +V Y +I+A+ +E +D AMRV+ EM GC+ +VT
Sbjct: 288 ADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTA 347
Query: 253 VIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILGLFDRMIESG 309
+I C+ G + + Y+VL +M KKG +P +TY EK E L L ++M G
Sbjct: 348 LISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRG 407
Query: 310 IRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMAR 369
P + Y +++R + G ++ +W +ME G SP + +++ +G L A
Sbjct: 408 CHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEAC 467
Query: 370 KYDEEMFAKGLSAKPR 385
+ +EM ++G+ + P+
Sbjct: 468 NHFKEMVSRGIFSAPQ 483
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 132/346 (38%), Gaps = 85/346 (24%)
Query: 17 FFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKR 76
F N + H D Y+ + D+ + FE PN + ++ +
Sbjct: 274 FTNLLSGYAHAGKMADAYDLMNDMRKRGFE------------------PNVNCYTVLIQA 315
Query: 77 YV-TAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFS 134
T ++EAM F +++ +G + D V+Y L+ C++ + + G+S
Sbjct: 316 LCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMI------------DKGYS 363
Query: 135 GLVEMNKTKI------YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188
L +M K + Y I+ K + +C E E+M +RG DL Y++ + + C
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423
Query: 189 KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVG---------------VSEGVDFAMR 233
K G+ +AV+L+ EM+ G+ V + +I VS G+ F+
Sbjct: 424 KLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGI-FSAP 482
Query: 234 VYREMREM-------------------------GCQPSVVTCNTVIKLLCENGRVREAYA 268
Y ++ + C+ +V I L G V+EA +
Sbjct: 483 QYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACS 542
Query: 269 VLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKM 314
+M + +P TY + L K L++R I + I K+
Sbjct: 543 YCLDMMEMDLMPQPNTYAKLMKGLNK------LYNRTIAAEITEKV 582
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 148 bits (374), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 186/369 (50%), Gaps = 13/369 (3%)
Query: 17 FFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRM-KDNPSSIPNHATFRIMFK 75
FF W + H+ + Y S++ IL K +F W LI M K+NP I F ++ +
Sbjct: 133 FFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPE-LFVVLVQ 191
Query: 76 RYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFS 134
R+ +A +V +A+ +++ +FG + DE + L+DALC++ V +A +L E+ + F
Sbjct: 192 RFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLF--EDMRMRFP 249
Query: 135 GLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPW 194
+ + +L GW ++ + + +M++ G D+ Y+ + +GK
Sbjct: 250 V-----NLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMA 304
Query: 195 KAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVI 254
A L ++M+++G + + Y +I+A+ + ++ AM+V+ EM C+ VVT ++
Sbjct: 305 DAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALV 364
Query: 255 KLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILGLFDRMIESGIR 311
C+ G++ + Y VL +M KKG +P +TY EK E L L ++M +
Sbjct: 365 SGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYH 424
Query: 312 PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKY 371
P + Y +++R + G ++ +W +MEE G SP + +++ L +G L A +
Sbjct: 425 PDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDH 484
Query: 372 DEEMFAKGL 380
+EM +GL
Sbjct: 485 FKEMVTRGL 493
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 49/278 (17%)
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCE---------- 113
PN + ++ + + EAM F +++ + + D V+Y LV C+
Sbjct: 320 PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIV 379
Query: 114 ---------------YKHVIEAQELCFGENKNVGFSGLVE-MNKTK---------IYNMI 148
Y H++ A E K F +E M K + IYN++
Sbjct: 380 LDDMIKKGLMPSELTYMHIMVAHE------KKESFEECLELMEKMRQIEYHPDIGIYNVV 433
Query: 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI 208
+R K+ + W EM++ G+ + ++ I ++ + G +A +KEM +G+
Sbjct: 434 IRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGL 493
Query: 209 KMDVVAYNTV---IRAVGVSEGVDFAMRVYREMREMG-CQPSVVTCNTVIKLLCENGRVR 264
V Y T+ + V + ++ A V+ + G C+ +V++ I L G +
Sbjct: 494 -FSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEK 552
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCLEK--PREILG 300
EA + EM + +P T+ + L+K RE G
Sbjct: 553 EACSYCIEMIEMDFMPQPDTFAKLMKGLKKLYNREFAG 590
>sp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880,
mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2
SV=1
Length = 540
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 188/386 (48%), Gaps = 30/386 (7%)
Query: 9 NDWKRALEFFNWVET-DCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH 67
++W+ A F W E C + D +I +LG +F+++W LI M N S
Sbjct: 135 DEWRLAFLAFKWGEKRGCDDQKSCDL---MIWVLGNHQKFNIAWCLIRDMF-NVSKDTRK 190
Query: 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCF 125
A F +M RY A+ ++A+ TF+ +D+F DE ++ L+ ALC + H+ +A+E
Sbjct: 191 AMF-LMMDRYAAANDTSQAIRTFDIMDKFKHTPYDE-AFQGLLCALCRHGHIEKAEEFML 248
Query: 126 GENK--NVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCRE---FWEEMDKRGVVKDLHSY 180
K V G +N+IL GW + W E W EM + + SY
Sbjct: 249 ASKKLFPVDVEG---------FNVILNGWCNI--WTDVTEAKRIWREMGNYCITPNKDSY 297
Query: 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240
S + K G + +++LY EMKK+G+ + YN+++ + + D AM++ +++ E
Sbjct: 298 SHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNE 357
Query: 241 MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL--EKPREI 298
G +P VT N++I+ LCE G++ A VLA M + P V T+H F + EK E+
Sbjct: 358 EGLKPDSVTYNSMIRPLCEAGKLDVARNVLATMISENLSPTVDTFHAFLEAVNFEKTLEV 417
Query: 299 LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDA 358
LG +M S + P +T++++L K + +W +M+ + Y A +
Sbjct: 418 LG---QMKISDLGPTEETFLLILGKLFKGKQPENALKIWAEMDRFEIVANPALYLATIQG 474
Query: 359 LIDKGMLDMARKYDEEMFAKGLSAKP 384
L+ G L+ AR+ EM +KG P
Sbjct: 475 LLSCGWLEKAREIYSEMKSKGFVGNP 500
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 190/386 (49%), Gaps = 15/386 (3%)
Query: 14 ALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIM 73
++ +FN + D F ++ +N ++ + F+ W+ + K + + +F I+
Sbjct: 113 SISYFNEM-VDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKV--VLDVYSFGIL 169
Query: 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEVS-YCNLVDALCEYKHVIEAQELCFGENKNVG 132
K A + ++ +L EFG V Y L+D C+ + +A++L F +G
Sbjct: 170 IKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF----EMG 225
Query: 133 FSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192
GLV +T Y +++ G FK + E +E+M + GV +L++Y+ M+ +CK G+
Sbjct: 226 KLGLVANERT--YTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283
Query: 193 PWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNT 252
A +++ EM+++G+ ++V YNT+I + ++ A +V +M+ G P+++T NT
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNT 343
Query: 253 VIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG---LFDRMIESG 309
+I C G++ +A ++ ++ +G P ++TY+ + + G + M E G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 310 IRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMAR 369
I+P TY +L+ F R + + MEELG PD Y+ L+ KG ++ A
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463
Query: 370 KYDEEMFAKGLSAKPREELGTKLVQG 395
+ + M K + +P E + ++ G
Sbjct: 464 RLFKSMVEK--NCEPNEVIYNTMILG 487
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 148/315 (46%), Gaps = 12/315 (3%)
Query: 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFR 71
K+ E + ++ D F + TYN V++ L K ++ + M++ S N T+
Sbjct: 250 KQGFEMYEKMQEDGVFPNLY-TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSC-NIVTYN 307
Query: 72 IMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKN 130
+ +NEA +++ G+ + ++Y L+D C + +A LC ++
Sbjct: 308 TLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLC----RD 363
Query: 131 VGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190
+ GL T YN+++ G+ + + +EM++RG+ +Y+I +D +S
Sbjct: 364 LKSRGLSPSLVT--YNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421
Query: 191 GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTC 250
KA++L M++ G+ DV Y+ +I + ++ A R+++ M E C+P+ V
Sbjct: 422 DNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIY 481
Query: 251 NTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIE 307
NT+I C+ G A +L EM +K P+V +Y L K +E L ++MI+
Sbjct: 482 NTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMID 541
Query: 308 SGIRPKMDTYVMLLR 322
SGI P ++ R
Sbjct: 542 SGIDPSTSILSLISR 556
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQEL 123
P+ T+ I+ + + + +A+ ++E GL +V +Y L+ C + EA L
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465
Query: 124 CFGENKNVGFSGLVEMN---KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSY 180
F +VE N IYN ++ G+ K + + +EM+++ + ++ SY
Sbjct: 466 ---------FKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASY 516
Query: 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRA 221
++++CK K +A +L ++M GI + + RA
Sbjct: 517 RYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRA 557
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 179/385 (46%), Gaps = 17/385 (4%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
E L + + K A FF W F H + TYNS++ IL K +F+ +++ M
Sbjct: 166 EVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEM--GT 223
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEA 120
+ TF I K + A +A+G F + ++ K V N L+D+L K EA
Sbjct: 224 KGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA 283
Query: 121 QELCFGENKNVGFSGLVEMNKTKI--YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLH 178
Q L F L E + Y ++L GW ++ + W +M +G+ D+
Sbjct: 284 QVL---------FDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIV 334
Query: 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238
++++ ++ + +S K A+KL+ MK KG +V +Y +IR ++ A+ + +M
Sbjct: 335 AHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDM 394
Query: 239 REMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEK---P 295
+ G QP +I ++ Y +L EM +KG PD TY+ + + P
Sbjct: 395 VDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMP 454
Query: 296 REILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNAL 355
++++MI++ I P + T+ M+++ + VW++M + G PD+ +Y L
Sbjct: 455 EHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVL 514
Query: 356 VDALIDKGMLDMARKYDEEMFAKGL 380
+ LI +G A +Y EEM KG+
Sbjct: 515 IRGLIGEGKSREACRYLEEMLDKGM 539
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 134/311 (43%), Gaps = 33/311 (10%)
Query: 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH 67
A + K+A+ F ++ F +T N ++D LG+ + L ++K+ + PN
Sbjct: 242 AKERKKAVGIFELMKK-YKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT--PNM 298
Query: 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYK---------HV 117
T+ ++ + + EA +N + + GLK D V++ +++ L + HV
Sbjct: 299 MTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHV 358
Query: 118 IEAQELC------------FGENKNVG-----FSGLVEMN---KTKIYNMILRGWFKMSW 157
++++ C F + ++ F +V+ +Y ++ G+
Sbjct: 359 MKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKK 418
Query: 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNT 217
E +EM ++G D +Y+ + +M P A ++Y +M + I+ + +N
Sbjct: 419 LDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNM 478
Query: 218 VIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG 277
++++ ++ + V+ EM + G P + +I+ L G+ REA L EM KG
Sbjct: 479 IMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKG 538
Query: 278 CVPDVITYHCF 288
+I Y+ F
Sbjct: 539 MKTPLIDYNKF 549
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 17/385 (4%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
E L + + K A FF W F H + TYNS++ IL K +F+ +++ M
Sbjct: 166 EVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEM--GT 223
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEA 120
+ TF I K + A +A+G F + ++ K V N L+D+L K EA
Sbjct: 224 KGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA 283
Query: 121 QELCFGENKNVGFSGLVEMNKTKI--YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLH 178
Q L F L E + Y ++L GW ++ + W +M G+ D+
Sbjct: 284 QVL---------FDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIV 334
Query: 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238
++++ ++ + +S K A+KL+ MK KG +V +Y +IR ++ A+ + +M
Sbjct: 335 AHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDM 394
Query: 239 REMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEK---P 295
+ G QP +I ++ Y +L EM +KG PD TY+ + + P
Sbjct: 395 VDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMP 454
Query: 296 REILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNAL 355
++++MI++ I P + T+ M+++ + VW +M + G PD+ +Y L
Sbjct: 455 EHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVL 514
Query: 356 VDALIDKGMLDMARKYDEEMFAKGL 380
+ LI +G A +Y EEM KG+
Sbjct: 515 IRGLISEGKSREACRYLEEMLDKGM 539
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 133/312 (42%), Gaps = 35/312 (11%)
Query: 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH 67
A + K+A+ F ++ F +T N ++D LG+ + L ++K+ + PN
Sbjct: 242 AKERKKAVGIFELMKK-YKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT--PNM 298
Query: 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV-----------DALCEYKH 116
T+ ++ + + EA +N + + GLK ++ N++ DA+ + H
Sbjct: 299 MTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLF-H 357
Query: 117 VIEAQELC------------FGENKNVG-----FSGLVEMN---KTKIYNMILRGWFKMS 156
V++++ C F + ++ F +V+ +Y ++ G+
Sbjct: 358 VMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQK 417
Query: 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYN 216
E +EM ++G D +Y+ + +M P ++Y +M + I+ + +N
Sbjct: 418 KLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFN 477
Query: 217 TVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276
++++ V+ + V+ EM + G P + +I+ L G+ REA L EM K
Sbjct: 478 MIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDK 537
Query: 277 GCVPDVITYHCF 288
G +I Y+ F
Sbjct: 538 GMKTPLIDYNKF 549
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 17/385 (4%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
E L + + K A FF W F H + TYNS++ IL K +F+ +++ M
Sbjct: 165 EVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEM--GT 222
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEA 120
+ TF I K + A +A+G F + ++ K V N L+D+L K EA
Sbjct: 223 KGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA 282
Query: 121 QELCFGENKNVGFSGLVEMNKTKI--YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLH 178
Q L F L E + Y ++L GW ++ + W +M G+ D+
Sbjct: 283 QVL---------FDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIV 333
Query: 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238
++++ ++ + +S K A+KL+ MK KG +V +Y +IR ++ A+ + +M
Sbjct: 334 AHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDM 393
Query: 239 REMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEK---P 295
+ G QP +I ++ Y +L EM +KG PD TY+ + + P
Sbjct: 394 VDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMP 453
Query: 296 REILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNAL 355
++++MI++ I P + T+ M+++ + VW +M + G PD+ +Y L
Sbjct: 454 EHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVL 513
Query: 356 VDALIDKGMLDMARKYDEEMFAKGL 380
+ LI +G A +Y EEM KG+
Sbjct: 514 IRGLISEGKSREACRYLEEMLDKGM 538
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 133/312 (42%), Gaps = 35/312 (11%)
Query: 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH 67
A + K+A+ F ++ F +T N ++D LG+ + L ++K+ + PN
Sbjct: 241 AKERKKAVGIFELMKK-YKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT--PNM 297
Query: 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV-----------DALCEYKH 116
T+ ++ + + EA +N + + GLK ++ N++ DA+ + H
Sbjct: 298 MTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLF-H 356
Query: 117 VIEAQELC------------FGENKNVG-----FSGLVEMN---KTKIYNMILRGWFKMS 156
V++++ C F + ++ F +V+ +Y ++ G+
Sbjct: 357 VMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQK 416
Query: 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYN 216
E +EM ++G D +Y+ + +M P ++Y +M + I+ + +N
Sbjct: 417 KLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFN 476
Query: 217 TVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276
++++ V+ + V+ EM + G P + +I+ L G+ REA L EM K
Sbjct: 477 MIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDK 536
Query: 277 GCVPDVITYHCF 288
G +I Y+ F
Sbjct: 537 GMKTPLIDYNKF 548
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 196/403 (48%), Gaps = 22/403 (5%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRM-KDN 60
+ L ++N W +A FF W + + H+ TYN+++D+LGK FDL W L++ M K+
Sbjct: 137 QVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNE 196
Query: 61 PSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDE-FGLK-DEVSYCNLVDALCEYKHVI 118
S + T + +R + N+A+ F ++++ +G+K D ++ +L+DAL + +
Sbjct: 197 ESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIE 256
Query: 119 EAQELCFGENKNVGFSGLVEMNK--TKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD 176
A E+ F L + K + +N+++ G+ K + R + M D
Sbjct: 257 HAHEV---------FLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPD 307
Query: 177 LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYR 236
+ +Y+ +++ CK G + ++ +EM++ G +VV Y V+ ++G S+ V A+ VY
Sbjct: 308 VVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYE 367
Query: 237 EMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR-CLEKP 295
+M+E GC P +++I +L + GR ++A + +M +G DV+ Y+ L
Sbjct: 368 KMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHS 427
Query: 296 RE--ILGLFDRMIE---SGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEF 350
R+ L L RM + P ++TY LL+ ++ + ++ M + S D
Sbjct: 428 RDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVS 487
Query: 351 AYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGTKLV 393
Y L+ L G ++ A + EE KG+ PR+ LV
Sbjct: 488 TYILLIRGLCMSGKVEEACLFFEEAVRKGMV--PRDSTCKMLV 528
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 184/383 (48%), Gaps = 37/383 (9%)
Query: 33 TYNSVID-ILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFN 91
+YN+V+D + + N+ M ++ S PN T+ I+ + + A ++ A+ F+
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVS-PNVFTYNILIRGFCFAGNIDVALTLFD 229
Query: 92 KLDEFG-LKDEVSYCNLVDALCEYKHV--------------IEAQELCF----------G 126
K++ G L + V+Y L+D C+ + + +E + + G
Sbjct: 230 KMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREG 289
Query: 127 ENKNVGFSGLVEMNKTK------IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSY 180
K V F L EMN+ YN +++G+ K + + EM + G+ + +Y
Sbjct: 290 RMKEVSFV-LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY 348
Query: 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240
+ + MCK+G +A++ +M+ +G+ + Y T++ ++ A RV REM +
Sbjct: 349 TSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMND 408
Query: 241 MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREI-- 298
G PSVVT N +I C G++ +A AVL +M +KG PDV++Y + ++
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDE 468
Query: 299 -LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVD 357
L + M+E GI+P TY L++ F + ++++M +G PDEF Y AL++
Sbjct: 469 ALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528
Query: 358 ALIDKGMLDMARKYDEEMFAKGL 380
A +G L+ A + EM KG+
Sbjct: 529 AYCMEGDLEKALQLHNEMVEKGV 551
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 159/363 (43%), Gaps = 22/363 (6%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C+A + AL F+ +ET + TYN++ID K + D + L+ M P
Sbjct: 216 CFAGNIDVALTLFDKMETKGCLPNVV-TYNTLIDGYCKLRKIDDGFKLLRSMALKGLE-P 273
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKH-----VIE 119
N ++ ++ + E +++ G DEV+Y L+ C+ + V+
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 120 AQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS 179
A+ L G +V Y ++ K + EF ++M RG+ + +
Sbjct: 334 AEMLRHGLTPSV-----------ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERT 382
Query: 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239
Y+ +D + G +A ++ +EM G VV YN +I V+ ++ A+ V +M+
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK 442
Query: 240 EMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPR 296
E G P VV+ +TV+ C + V EA V EM +KG PD ITY + + +
Sbjct: 443 EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTK 502
Query: 297 EILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALV 356
E L++ M+ G+ P TY L+ + G L + +M E G PD Y+ L+
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Query: 357 DAL 359
+ L
Sbjct: 563 NGL 565
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 169/398 (42%), Gaps = 35/398 (8%)
Query: 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIH-----RMKDNPSS 63
ND L+F NW FT + IL KF + + L + D +S
Sbjct: 60 NDQALILKFLNWANPHQFFTLRCKCI--TLHILTKFKLYKTAQILAEDVAAKTLDDEYAS 117
Query: 64 I-------------PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVD 109
+ + F ++ K Y L+++A+ + G V SY ++D
Sbjct: 118 LVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLD 177
Query: 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMD 169
A K I E F E S V YN+++RG+ +++M+
Sbjct: 178 ATIRSKRNISFAENVFKEMLESQVSPNV-----FTYNILIRGFCFAGNIDVALTLFDKME 232
Query: 170 KRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV---GVSE 226
+G + ++ +Y+ +D CK K KL + M KG++ ++++YN VI + G +
Sbjct: 233 TKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMK 292
Query: 227 GVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYH 286
V F V EM G VT NT+IK C+ G +A + AEM + G P VITY
Sbjct: 293 EVSF---VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYT 349
Query: 287 CFFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343
+ K + + D+M G+ P TY L+ F + G++ + V ++M +
Sbjct: 350 SLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409
Query: 344 GCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
G SP YNAL++ G ++ A E+M KGLS
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS 447
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 149/326 (45%), Gaps = 33/326 (10%)
Query: 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGF 133
FK Y TA ++ E + DE Y +LV +K + E +LC+
Sbjct: 93 FKLYKTAQILAEDVAAKTLDDE--------YASLV-----FKSLQETYDLCY-------- 131
Query: 134 SGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP 193
+ + +++++++ + ++S K G + + SY+ +D +S +
Sbjct: 132 ------STSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRN 185
Query: 194 WK-AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNT 252
A ++KEM + + +V YN +IR + +D A+ ++ +M GC P+VVT NT
Sbjct: 186 ISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNT 245
Query: 253 VIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLE-KPREILGLFDRMIESG 309
+I C+ ++ + + +L M KG P++I+Y+ C E + +E+ + M G
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305
Query: 310 IRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMAR 369
TY L++ + + G V+ +M G +P Y +L+ ++ G ++ A
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAM 365
Query: 370 KYDEEMFAKGLSAKPREELGTKLVQG 395
++ ++M +GL P E T LV G
Sbjct: 366 EFLDQMRVRGLC--PNERTYTTLVDG 389
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/397 (20%), Positives = 154/397 (38%), Gaps = 62/397 (15%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C A + RA+EF + + TY +++D + + ++ ++ M DN S P
Sbjct: 356 CKAGNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFS-P 413
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELC 124
+ T+ + + + +A+ + E GL D VSY ++ C V EA +
Sbjct: 414 SVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV- 472
Query: 125 FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYM 184
+ + G+ T Y+ +++G+ + + + +EEM + G+ D +Y+ +
Sbjct: 473 ---KREMVEKGIKP--DTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALI 527
Query: 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV--------------------GV 224
+ C G KA++L+ EM +KG+ DVV Y+ +I + V
Sbjct: 528 NAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESV 587
Query: 225 SEGVDF------------------------------AMRVYREMREMGCQPSVVTCNTVI 254
V + A +V+ M +P N +I
Sbjct: 588 PSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMI 647
Query: 255 KLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILGLFDRMIESGIR 311
C G +R+AY + EM K G + +T + L K E+ + ++ S
Sbjct: 648 HGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCEL 707
Query: 312 PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPD 348
+ + +L+ R G + V V +M + G P+
Sbjct: 708 SEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 189/403 (46%), Gaps = 44/403 (10%)
Query: 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61
+TL ++ K AL FF ++ + + T ++N +IDILG+ +FD+ LI M
Sbjct: 76 QTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQT- 134
Query: 62 SSIPNHATFRIMFKRYVTAHLVNEAMGTFN-----------KLDEFGLKDEVSYCNLVDA 110
+ TF I+ KR + A L +A+ F+ +L EFG L+D
Sbjct: 135 ----SPETFLILVKRLIAAGLTRQAVRAFDDAPCFLENRRFRLVEFGF--------LLDT 182
Query: 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDK 170
LC+Y + A + F E K S K+Y +++ GW K+ +F EM +
Sbjct: 183 LCKYGYTKMAVGV-FNERKEEFGSD------EKVYTILIAGWCKLRRIDMAEKFLVEMIE 235
Query: 171 RGVVKDLHSYSIYMDIMCKSGK--PWK--------AVKLYKEMKKKGIKMDVVAYNTVIR 220
G+ ++ +Y++ ++ +C++ P + A K++ EM+++GI+ DV +++ V+
Sbjct: 236 SGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLH 295
Query: 221 AVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP 280
+ + + + M+ G P++ T +V+K LC GR+ EA +L M + G P
Sbjct: 296 MYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISP 355
Query: 281 DVITYHCFFRCLEKPREILG---LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVW 337
TY+CFF+ + ++ G L+ +M +P TY +LL F G + V +W
Sbjct: 356 SSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEIW 415
Query: 338 KKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
++ PD +Y +LV L K A Y EM +G
Sbjct: 416 DDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGF 458
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYK 201
T+ YN++L + + +E W+++ DL SY+ + +C K +A +
Sbjct: 392 TQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFV 451
Query: 202 EMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240
EM ++G + + T+ + + S MR +R +++
Sbjct: 452 EMIERGFLPQKLTFETLYKGLIQSN----KMRTWRRLKK 486
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 6/238 (2%)
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
YN+++ G+ K G+ +D+ V D+ +Y+ + +C SGK +A+++ M
Sbjct: 175 YNVMISGYCK---AGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRML 231
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
++ DV+ Y +I A GV AM++ EMR+ GC P VVT N ++ +C+ GR+
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILGLFDRMIESGIRPKMDTYVMLL 321
EA L +MP GC P+VIT++ R + + L M+ G P + T+ +L+
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351
Query: 322 RKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
R G L + +KM + GC P+ +YN L+ + +D A +Y E M ++G
Sbjct: 352 NFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 176/394 (44%), Gaps = 17/394 (4%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C A + AL + + TYN+++ L + + ++ RM P
Sbjct: 183 CKAGEINNALSVLDRMSVSPDVV----TYNTILRSLCDSGKLKQAMEVLDRMLQR-DCYP 237
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG-LKDEVSYCNLVDALCEYKHVIEAQELC 124
+ T+ I+ + V AM +++ + G D V+Y LV+ +C+ + EA +
Sbjct: 238 DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297
Query: 125 FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYM 184
++ SG +N+ILR W + +M ++G + +++I +
Sbjct: 298 ----NDMPSSGC--QPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351
Query: 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ 244
+ +C+ G +A+ + ++M + G + + ++YN ++ + +D A+ M GC
Sbjct: 352 NFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411
Query: 245 PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREI---LGL 301
P +VT NT++ LC++G+V +A +L ++ KGC P +ITY+ L K + + L
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 302 FDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID 361
D M ++P TY L+ R G + + + E +G P+ +N+++ L
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531
Query: 362 KGMLDMARKYDEEMFAKGLSAKPREELGTKLVQG 395
D A + M +G KP E T L++G
Sbjct: 532 SRQTDRAIDFLVFMINRG--CKPNETSYTILIEG 563
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 6/222 (2%)
Query: 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222
+F E M G V D+ + + C+ GK KA K+ + ++ G DV+ YN +I
Sbjct: 123 KFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGY 182
Query: 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV 282
+ ++ A+ V + M P VVT NT+++ LC++G++++A VL M ++ C PDV
Sbjct: 183 CKAGEINNALSV---LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDV 239
Query: 283 ITYHCFFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKK 339
ITY + + + L D M + G P + TY +L+ + G L
Sbjct: 240 ITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND 299
Query: 340 MEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
M GC P+ +N ++ ++ G A K +M KG S
Sbjct: 300 MPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 119/252 (47%), Gaps = 8/252 (3%)
Query: 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86
F+ + T+N +I+ L + + +++ +M + PN ++ + + ++ A
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ-PNSLSYNPLLHGFCKEKKMDRA 398
Query: 87 MGTFNKLDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145
+ ++ G D V+Y ++ ALC+ V +A E+ + + G S ++ Y
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI-LNQLSSKGCSPVL-----ITY 452
Query: 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205
N ++ G K GK + +EM + + D +YS + + + GK +A+K + E ++
Sbjct: 453 NTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFER 512
Query: 206 KGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE 265
GI+ + V +N+++ + S D A+ M GC+P+ + +I+ L G +E
Sbjct: 513 MGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKE 572
Query: 266 AYAVLAEMPKKG 277
A +L E+ KG
Sbjct: 573 ALELLNELCNKG 584
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 218 VIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG 277
++R + EG F M G P ++ C T+I+ C G+ R+A +L + G
Sbjct: 112 MVRTGELEEGFKF----LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSG 167
Query: 278 CVPDVITYHCFFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334
VPDVITY+ K EI L + DRM + P + TY +LR G L+
Sbjct: 168 AVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAM 224
Query: 335 VVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
V +M + C PD Y L++A + A K +EM +G
Sbjct: 225 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 179/369 (48%), Gaps = 29/369 (7%)
Query: 18 FNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLI-HRMK-DNPSSIPNHATFRIMFK 75
F W E FT + ++SV++ L K EF+++W+L+ R++ D S++ + TF ++ +
Sbjct: 122 FKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIR 181
Query: 76 RYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN----------LVDALCEYKHVIEAQELCF 125
RY A +V +A+ F EF E C L+DALC+ HV EA
Sbjct: 182 RYARAGMVQQAIRAF----EFARSYE-PVCKSATELRLLEVLLDALCKEGHVREASMYL- 235
Query: 126 GENKNVGFSGLVEMN---KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
+ +G G ++ N +I+N++L GWF+ + + WEEM V + +Y
Sbjct: 236 ---ERIG--GTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGT 290
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
++ C+ + A+++ +EMK ++++ + +N +I +G + + A+ +
Sbjct: 291 LIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLSEALGMMERFFVCE 350
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLE---KPREIL 299
P++VT N+++K C+ G + A +L M +G P TY+ FF+ K E +
Sbjct: 351 SGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFFKYFSKHNKTEEGM 410
Query: 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
L+ ++IE+G P TY ++L+ G L V K+M+ G PD L+ L
Sbjct: 411 NLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLIHLL 470
Query: 360 IDKGMLDMA 368
ML+ A
Sbjct: 471 CRLEMLEEA 479
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 166/380 (43%), Gaps = 18/380 (4%)
Query: 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILG----KFFEFDLSWNLIHRMKDNPSSIPNH 67
K A FF W H++H YN +IDIL K +F + +++ MK N ++
Sbjct: 140 KTAFRFFTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLV 199
Query: 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEAQELCFG 126
+ ++Y +L + K + E++ N L+DALC+ V E + L
Sbjct: 200 DVLLEILRKYCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRR 259
Query: 127 ENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186
V +N++ GW ++ K + EEM + G + +Y +D
Sbjct: 260 MRHRVKPDA-------NTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDT 312
Query: 187 MCKSGKPWKAVKLYKEMKKKGIKMDVVAYNT---VIRAVGVSEGVDFAMRVYREMREMGC 243
C++G +A L+ M KG + T +I A+ ++ + + M GC
Sbjct: 313 FCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGC 372
Query: 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILG 300
P V T VI+ +C +V EAY L EM KG PD++TY+CF R L K E L
Sbjct: 373 LPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALK 432
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360
L+ RM+ES P + TY ML+ F F W +M++ C D Y A+++ L
Sbjct: 433 LYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLF 492
Query: 361 DKGMLDMARKYDEEMFAKGL 380
D A EE+ KGL
Sbjct: 493 DCHRAKEACFLLEEVVNKGL 512
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 13/318 (4%)
Query: 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFN 91
+ +N ++D L K L+ RM+ P+ TF ++F + +AM
Sbjct: 235 NAFNMLLDALCKCGLVKEGEALLRRMRHRVK--PDANTFNVLFFGWCRVRDPKKAMKLLE 292
Query: 92 KLDEFGLKDE-VSYCNLVDALCEYKHVIEAQELC-FGENKNVGFSGLVEMNKTKIYNMIL 149
++ E G K E +YC +D C+ V EA +L F K S K + +++
Sbjct: 293 EMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPT----AKTFALMI 348
Query: 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK 209
K +C E M G + D+ +Y ++ MC + K +A K EM KG
Sbjct: 349 VALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYP 408
Query: 210 MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAV 269
D+V YN +R + + D A+++Y M E C PSV T N +I + E A+
Sbjct: 409 PDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNT 468
Query: 270 LAEMPKKGCVPDVITY----HCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFG 325
EM K+ CV DV TY + F C + +E L + ++ G++ + L +
Sbjct: 469 WTEMDKRDCVQDVETYCAMINGLFDC-HRAKEACFLLEEVVNKGLKLPYRVFDSFLMRLS 527
Query: 326 RWGFLRPVFVVWKKMEEL 343
G L+ + V + M++
Sbjct: 528 EVGNLKAIHKVSEHMKKF 545
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 160/359 (44%), Gaps = 47/359 (13%)
Query: 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL-KDEVSYCNLVDALCEYKHVIEAQE 122
+P+ F M + + +++A+ FN + E GL D V Y L+ C + A
Sbjct: 372 VPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMN 431
Query: 123 LCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
L +N M+ YN IL G K G+ + + EM +R + D ++ +I
Sbjct: 432 L-----RNEMLQQGCAMDVVT-YNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDF------------ 230
+D CK G A++L+++MK+K I++DVV YNT++ G +D
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 231 -----------------------AMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAY 267
A RV+ EM +P+V+ CN++IK C +G +
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605
Query: 268 AVLAEMPKKGCVPDVITYHCF---FRCLEKPREILGLFDRMIE--SGIRPKMDTYVMLLR 322
+ L +M +G VPD I+Y+ F E + GL +M E G+ P + TY +L
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILH 665
Query: 323 KFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
F R ++ VV +KM E G +PD Y +++ + + L A + +EM +G S
Sbjct: 666 GFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFS 724
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 27/357 (7%)
Query: 26 HFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85
+F HT+ + +++I IL + + + + RM I R+ +VN
Sbjct: 108 NFKHTSLSLSAMIHILVRSGRLSDAQSCLLRM------IRRSGVSRL--------EIVNS 153
Query: 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145
TF+ G D V + L+ + + + EA E F ++ GF+ ++ I
Sbjct: 154 LDSTFSNC---GSNDSV-FDLLIRTYVQARKLREAHE-AFTLLRSKGFTVSIDACNALIG 208
Query: 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205
+++ GW +++W ++E+ + GV ++++ +I ++ +CK GK K ++++
Sbjct: 209 SLVRIGWVELAWG-----VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE 263
Query: 206 KGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE 265
KG+ D+V YNT+I A ++ A + M G P V T NTVI LC++G+
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYER 323
Query: 266 AYAVLAEMPKKGCVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYVMLLR 322
A V AEM + G PD TY K +++ +F M + P + + ++
Sbjct: 324 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMS 383
Query: 323 KFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
F R G L + + ++E G PD Y L+ KGM+ +A EM +G
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 176/383 (45%), Gaps = 16/383 (4%)
Query: 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH 67
A + A E F + + FT + D N++I L + +L+W + + + I N
Sbjct: 178 ARKLREAHEAFTLLRSK-GFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGI-NV 235
Query: 68 ATFRIMFKRYVTAHLVNEAMGTF-NKLDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCF 125
T IM + E +GTF +++ E G+ D V+Y L+ A + EA EL
Sbjct: 236 YTLNIMVNALCKDGKM-EKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFEL-M 293
Query: 126 GENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMD 185
GFS V YN ++ G K + + +E + EM + G+ D +Y +
Sbjct: 294 NAMPGKGFSPGV-----YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348
Query: 186 IMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP 245
CK G + K++ +M+ + + D+V +++++ S +D A+ + ++E G P
Sbjct: 349 EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408
Query: 246 SVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG----L 301
V +I+ C G + A + EM ++GC DV+TY+ L K R++LG L
Sbjct: 409 DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCK-RKMLGEADKL 467
Query: 302 FDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID 361
F+ M E + P T +L+ + G L+ +++KM+E D YN L+D
Sbjct: 468 FNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGK 527
Query: 362 KGMLDMARKYDEEMFAKGLSAKP 384
G +D A++ +M +K + P
Sbjct: 528 VGDIDTAKEIWADMVSKEILPTP 550
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 16/190 (8%)
Query: 98 LKDEVSYCNLVDALCEYKHVIEA----QELCFGENKNVGFSGLVEMNKTKIYNMILRGWF 153
L +SY LV+ALC H+ EA E+ +KN+ + + I N +++G+
Sbjct: 547 LPTPISYSILVNALCSKGHLAEAFRVWDEMI---SKNIKPTVM-------ICNSMIKGYC 596
Query: 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK--GIKMD 211
+ F E+M G V D SY+ + + KA L K+M+++ G+ D
Sbjct: 597 RSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
V YN+++ + A V R+M E G P T +I + EA+ +
Sbjct: 657 VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHD 716
Query: 272 EMPKKGCVPD 281
EM ++G PD
Sbjct: 717 EMLQRGFSPD 726
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/243 (18%), Positives = 104/243 (42%), Gaps = 11/243 (4%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C + + A+E F ++ + TYN+++D GK + D + + M + +P
Sbjct: 491 CKLGNLQNAMELFQKMK-EKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILP 548
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEAQELC 124
++ I+ + + EA ++++ +K V CN ++ C + + +
Sbjct: 549 TPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFL 608
Query: 125 FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR--GVVKDLHSYSI 182
+ + G V YN ++ G+ + K ++M++ G+V D+ +Y+
Sbjct: 609 ----EKMISEGFVP--DCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNS 662
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
+ C+ + +A + ++M ++G+ D Y +I + + A R++ EM + G
Sbjct: 663 ILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722
Query: 243 CQP 245
P
Sbjct: 723 FSP 725
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 164/342 (47%), Gaps = 11/342 (3%)
Query: 26 HFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85
+ T T+N++I L + + LI RM P+ T+ + ++
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQ-PDLFTYGTVVNGLCKRGDIDL 238
Query: 86 AMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144
A+ K+++ ++ D V Y ++DALC YK+V +A L F E N G V
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNL-FTEMDNKGIRPNV-----VT 292
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
YN ++R W +M +R + ++ ++S +D K GK +A KLY EM
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
K+ I D+ Y+++I + + +D A ++ M C P+VVT NT+IK C+ RV
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCLEKPRE---ILGLFDRMIESGIRPKMDTYVMLL 321
E + EM ++G V + +TY+ + L + + +F +M+ G+ P + TY +LL
Sbjct: 413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472
Query: 322 RKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363
++G L VV++ +++ PD + YN +++ + G
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 168/351 (47%), Gaps = 11/351 (3%)
Query: 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKL 93
+N ++ + K +FDL +L RM++ S + ++ I+ + + A+ K+
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLY-SYNILINCFCRRSQLPLALAVLGKM 141
Query: 94 DEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152
+ G + D V+ +L++ C K + EA L + F + N T +N ++ G
Sbjct: 142 MKLGYEPDIVTLSSLLNGYCHGKRISEAVALV-----DQMFVMEYQPN-TVTFNTLIHGL 195
Query: 153 FKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV 212
F + + + M RG DL +Y ++ +CK G A+ L K+M+K I+ DV
Sbjct: 196 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADV 255
Query: 213 VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE 272
V Y T+I A+ + V+ A+ ++ EM G +P+VVT N++I+ LC GR +A +L++
Sbjct: 256 VIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 315
Query: 273 MPKKGCVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYVMLLRKFGRWGF 329
M ++ P+V+T+ K +++ L+D MI+ I P + TY L+ F
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375
Query: 330 LRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
L +++ M C P+ YN L+ ++ + EM +GL
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 169/364 (46%), Gaps = 34/364 (9%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY +V++ L K + DL+ +L+ +M+ + + + VN+A+ F +
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIE-ADVVIYTTIIDALCNYKNVNDALNLFTE 280
Query: 93 LDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGE-----NKNV-GFSGLV-------- 137
+D G++ + V+Y +L+ LC Y +A L N NV FS L+
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 138 ---------EMNKTKI------YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
EM K I Y+ ++ G+ + + +E M + ++ +Y+
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
+ CK+ + + ++L++EM ++G+ + V YNT+I+ + + D A +++++M G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG-- 300
P ++T + ++ LC+ G++ +A V + K PD+ TY+ + K ++
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520
Query: 301 -LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
LF + G++P + Y ++ F R G ++++M+E G P+ YN L+ A
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 580
Query: 360 IDKG 363
+ G
Sbjct: 581 LRDG 584
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 3/221 (1%)
Query: 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222
+ + EM + + + ++ + + K K + L + M+ I D+ +YN +I
Sbjct: 66 DLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCF 125
Query: 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV 282
+ A+ V +M ++G +P +VT ++++ C R+ EA A++ +M P+
Sbjct: 126 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 185
Query: 283 ITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKK 339
+T++ L K E + L DRM+ G +P + TY ++ + G + + KK
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 245
Query: 340 MEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
ME+ D Y ++DAL + ++ A EM KG+
Sbjct: 246 MEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 14/268 (5%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY+S+I+ D + ++ M + PN T+ + K + A V E M F +
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMI-SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 93 LDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151
+ + GL + V+Y L+ L + AQ++ F + + G + Y+++L G
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI-FKKMVSDGVPPDI-----ITYSILLDG 474
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
K K +E + K + D+++Y+I ++ MCK+GK L+ + KG+K +
Sbjct: 475 LCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534
Query: 212 VVAYNTVIRAV---GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYA 268
V+ Y T+I G+ E D ++REM+E G P+ T NT+I+ +G +
Sbjct: 535 VIIYTTMISGFCRKGLKEEAD---ALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAE 591
Query: 269 VLAEMPKKGCVPDVITYHCFFRCLEKPR 296
++ EM G V D T L R
Sbjct: 592 LIKEMRSCGFVGDASTISMVINMLHDGR 619
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255
AV L+ EM + +V +N ++ A+ D + + M+ + + + N +I
Sbjct: 64 AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 123
Query: 256 LLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRP 312
C ++ A AVL +M K G PD++T ++ E + L D+M +P
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 183
Query: 313 KMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMA 368
T+ L+ + +M GC PD F Y +V+ L +G +D+A
Sbjct: 184 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 185/396 (46%), Gaps = 27/396 (6%)
Query: 13 RALEFFNWVETDCHFTHTTDTYNSVIDILG---------KFFEFDLSWNLIHRMKDNPSS 63
+A++ F+ + + + ++NSV++++ +F+++ ++ N+ N +
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNM------NMNI 183
Query: 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG-LKDEVSYCNLVDALCEYKHVIEAQE 122
PN +F ++ K V+ A+ F + E L D +YC L+D LC+ + + EA
Sbjct: 184 SPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV- 242
Query: 123 LCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
L E ++ G S IYN+++ G K + + + M +G V + +Y+
Sbjct: 243 LLLDEMQSEGCSP-----SPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
+ +C GK KAV L + M + V Y T+I + A+R+ M E G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLE-KPREIL 299
+ + +I L + G+ EA ++ +M +KGC P+++ Y C E KP E
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417
Query: 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
+ +RMI SG P TY L++ F + G VWK+M++ GCS ++F Y+ L+D L
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477
Query: 360 IDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQG 395
G + A +M G+ KP + +++G
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGI--KPDTVAYSSIIKG 511
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 164/358 (45%), Gaps = 21/358 (5%)
Query: 34 YNSVIDILGKFFEFDLSWNLIHRMKDN---PSSIPNHATFRIMFKRYVTAHLVNEAMGTF 90
YN +ID L K + DL+ + ++ DN +PN T+ + +++A+
Sbjct: 260 YNVLIDGLCK--KGDLTR--VTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLL 315
Query: 91 NKL-DEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149
++ + ++V+Y L++ L + + +A L + G+ +N+ IY++++
Sbjct: 316 ERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRL-LSSMEERGY----HLNQ-HIYSVLI 369
Query: 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK 209
G FK + W +M ++G ++ YS+ +D +C+ GKP +A ++ M G
Sbjct: 370 SGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCL 429
Query: 210 MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAV 269
+ Y+++++ + + A++V++EM + GC + + +I LC GRV+EA V
Sbjct: 430 PNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMV 489
Query: 270 LAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMI---ESGIRPKMDTYVMLLRK 323
++M G PD + Y + L L L+ M+ E +P + TY +LL
Sbjct: 490 WSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDG 549
Query: 324 FGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG-MLDMARKYDEEMFAKGL 380
+ + M + GC PD N ++ L +K D R + EE+ + L
Sbjct: 550 LCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLL 607
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 100/408 (24%), Positives = 188/408 (46%), Gaps = 21/408 (5%)
Query: 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPS 62
+L NDW+R+L +WV + +T + YN V+ + + +FD++ L M+
Sbjct: 127 SLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRAL 186
Query: 63 SIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDA---LCEYKHVI 118
+ P+ T+ + + + + A+ K+++ + D V Y NL++ LC+Y I
Sbjct: 187 A-PDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAI 245
Query: 119 EAQELCFGENKNVGFS-GLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL 177
F K G + LV YN ++ + K + + R +EM++ GV+ +
Sbjct: 246 S----IFSRLKRSGITPDLVA------YNSMINVYGKAKLFREARLLIKEMNEAGVLPNT 295
Query: 178 HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYRE 237
SYS + + ++ K +A+ ++ EMK+ +D+ N +I G + V A R++
Sbjct: 296 VSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWS 355
Query: 238 MREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPRE 297
+R+M +P+VV+ NT++++ E EA + M +K +V+TY+ + K E
Sbjct: 356 LRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTME 415
Query: 298 ---ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNA 354
L M GI P TY ++ +G+ G L +++K+ G D+ Y
Sbjct: 416 HEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQT 475
Query: 355 LVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQGGLDGEQS 402
++ A G++ A++ E+ K PRE T L + G E +
Sbjct: 476 MIVAYERVGLMGHAKRLLHEL--KLPDNIPRETAITILAKAGRTEEAT 521
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 168/382 (43%), Gaps = 44/382 (11%)
Query: 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT 69
D+ +A+ F+ ++ T YNS+I++ GK F + LI M + +PN +
Sbjct: 240 DYSKAISIFSRLKRSG-ITPDLVAYNSMINVYGKAKLFREARLLIKEMNE-AGVLPNTVS 297
Query: 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL-VDALCEYKHVIEAQELCFGEN 128
+ + YV H EA+ F ++ E +++ CN+ +D + V EA L +
Sbjct: 298 YSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLR 357
Query: 129 KNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188
K +V YN ILR + + +G+ + M ++ + +++ +Y+ + I
Sbjct: 358 KMDIEPNVVS------YNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYG 411
Query: 189 KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ---- 244
K+ + KA L +EM+ +GI+ + + Y+T+I G + +D A +++++R G +
Sbjct: 412 KTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQV 471
Query: 245 ---------------------------PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG 277
P + T I +L + GR EA V + + G
Sbjct: 472 LYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESG 531
Query: 278 CVPDVITYHCFFRCLEKPRE---ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334
V D+ + C + + ++ +F++M +G P + M+L +G+
Sbjct: 532 EVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKAD 591
Query: 335 VVWKKMEELGCS-PDEFAYNAL 355
V+++M+E GC PDE + L
Sbjct: 592 TVYREMQEEGCVFPDEVHFQML 613
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 173/398 (43%), Gaps = 51/398 (12%)
Query: 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA 68
ND+ AL FF W++ F H TY +++ LG+ +F L+ M + PN
Sbjct: 342 NDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRD-GCQPNTV 400
Query: 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGE 127
T+ + Y A+ +NEAM FN++ E G K D V+YC L+D I A+
Sbjct: 401 TYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID--------IHAK------ 446
Query: 128 NKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187
+G +++ + ++ M G+ D +YS+ ++ +
Sbjct: 447 ------AGFLDI---------------------AMDMYQRMQAGGLSPDTFTYSVIINCL 479
Query: 188 CKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSV 247
K+G A KL+ EM +G ++V YN ++ + A+++YR+M+ G +P
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539
Query: 248 VTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGL---FDR 304
VT + V+++L G + EA AV EM +K +PD Y K + +
Sbjct: 540 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599
Query: 305 MIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID-KG 363
M+ +G+RP + T LL F R + + + + M LG P Y L+ D +
Sbjct: 600 MLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRS 659
Query: 364 MLDMARKYDEEMFAKGLSAKPREELGTKLVQGGLDGEQ 401
LDM + ++ A + P K+ G DGE
Sbjct: 660 KLDMG--FCGQLMAS--TGHPAHMFLLKMPAAGPDGEN 693
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 113/237 (47%), Gaps = 7/237 (2%)
Query: 146 NMILRGWFKMSWWGKCREFWEEMDKR-GVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
N +L+ +M+ +G F+ + ++ G D H+Y+ + + ++ + KL EM
Sbjct: 335 NQVLK---QMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMV 391
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
+ G + + V YN +I + G + ++ AM V+ +M+E GC+P VT T+I + + G +
Sbjct: 392 RDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLD 451
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG---LFDRMIESGIRPKMDTYVMLL 321
A + M G PD TY CL K + LF M++ G P + TY +++
Sbjct: 452 IAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMM 511
Query: 322 RKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378
+ + +++ M+ G PD+ Y+ +++ L G L+ A EM K
Sbjct: 512 DLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 224 VSEGVDFAMRVYR-------EMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276
+ E V +R +R ++ +G + N V+K + + G + L P
Sbjct: 301 IVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQP-- 358
Query: 277 GCVPDVITYHCFFRCLEKPRE---ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPV 333
G D TY L + ++ I L D M+ G +P TY L+ +GR +L
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 334 FVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
V+ +M+E GC PD Y L+D G LD+A + M A GLS
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLS 466
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 17/320 (5%)
Query: 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE-VSYCNLVDAL----CEYKHVIEAQELC 124
F + Y + L EA+ FN + E+GL+ V+Y ++DA E+K V +
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAK----F 326
Query: 125 FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYM 184
F E + G V+ ++ +N +L + W R ++EM R + +D+ SY+ +
Sbjct: 327 FDEMQRNG----VQPDRI-TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLL 381
Query: 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ 244
D +CK G+ A ++ +M K I +VV+Y+TVI + D A+ ++ EMR +G
Sbjct: 382 DAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIA 441
Query: 245 PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILGL 301
V+ NT++ + + GR EA +L EM G DV+TY+ K E+ +
Sbjct: 442 LDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKV 501
Query: 302 FDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID 361
F M + P + TY L+ + + G + ++++ + G D Y+AL+DAL
Sbjct: 502 FTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCK 561
Query: 362 KGMLDMARKYDEEMFAKGLS 381
G++ A +EM +G+S
Sbjct: 562 NGLVGSAVSLIDEMTKEGIS 581
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 135/305 (44%), Gaps = 24/305 (7%)
Query: 33 TYNSVIDILGK-FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFN 91
TYN+VID GK EF M+ N P+ TF + L A F+
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQ-PDRITFNSLLAVCSRGGLWEAARNLFD 363
Query: 92 KLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI------ 144
++ ++ +V SY L+DA+C+ G ++ F L +M +I
Sbjct: 364 EMTNRRIEQDVFSYNTLLDAICK------------GGQMDLAFEILAQMPVKRIMPNVVS 411
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
Y+ ++ G+ K + + + EM G+ D SY+ + I K G+ +A+ + +EM
Sbjct: 412 YSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA 471
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
GIK DVV YN ++ G D +V+ EM+ P+++T +T+I + G +
Sbjct: 472 SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYK 531
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLL 321
EA + E G DV+ Y L K + + L D M + GI P + TY ++
Sbjct: 532 EAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSII 591
Query: 322 RKFGR 326
FGR
Sbjct: 592 DAFGR 596
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 164/350 (46%), Gaps = 22/350 (6%)
Query: 11 WKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATF 70
W+ A F+ + T+ +YN+++D + K + DL++ ++ +M +PN ++
Sbjct: 355 WEAARNLFDEM-TNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVK-RIMPNVVSY 412
Query: 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENK 129
+ + A +EA+ F ++ G+ D VSY L+ + EA ++ E
Sbjct: 413 STVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDI-LREMA 471
Query: 130 NVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189
+VG V YN +L G+ K + + ++ + EM + V+ +L +YS +D K
Sbjct: 472 SVGIKKDV-----VTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSK 526
Query: 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVT 249
G +A+++++E K G++ DVV Y+ +I A+ + V A+ + EM + G P+VVT
Sbjct: 527 GGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVT 586
Query: 250 CNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRM-IES 308
N++I + + + A+ G +P + E R ++ LF ++ ES
Sbjct: 587 YNSIIDAFGRSATMDRS----ADYSNGGSLPFSSSALSALTETEGNR-VIQLFGQLTTES 641
Query: 309 GIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDA 358
R D + L + V++KM +L P+ ++A+++A
Sbjct: 642 NNRTTKDCEEGMQE-------LSCILEVFRKMHQLEIKPNVVTFSAILNA 684
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 41/255 (16%)
Query: 161 CREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIR 220
+ +E G ++++S + +SG +A+ ++ MK+ G++ ++V YN VI
Sbjct: 252 AKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVID 311
Query: 221 AVGVSEGVDF--AMRVYREMREMGCQPSVVT-------C--------------------- 250
A G G++F + + EM+ G QP +T C
Sbjct: 312 ACGKG-GMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRI 370
Query: 251 -------NTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILG 300
NT++ +C+ G++ A+ +LA+MP K +P+V++Y K E L
Sbjct: 371 EQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALN 430
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360
LF M GI +Y LL + + G + ++M +G D YNAL+
Sbjct: 431 LFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYG 490
Query: 361 DKGMLDMARKYDEEM 375
+G D +K EM
Sbjct: 491 KQGKYDEVKKVFTEM 505
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360
+F+ G + + L+ +GR G V+ M+E G P+ YNA++DA
Sbjct: 255 IFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACG 314
Query: 361 DKGM-LDMARKYDEEMFAKGL 380
GM K+ +EM G+
Sbjct: 315 KGGMEFKQVAKFFDEMQRNGV 335
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 161/364 (44%), Gaps = 43/364 (11%)
Query: 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT 69
D +ALE FN + + F HT TY SVI+ LG + +F+ ++ M++N +
Sbjct: 19 DPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGV 78
Query: 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENK 129
+ K Y V EA+ F ++D + + V
Sbjct: 79 YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTV--------------------------- 111
Query: 130 NVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189
FS YN I+ ++ + + + M RG+ D++S++I M CK
Sbjct: 112 ---FS----------YNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCK 158
Query: 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVT 249
+ +P A++L M +G +M+VVAY TV+ ++ +M G + T
Sbjct: 159 TSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLST 218
Query: 250 CNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG---LFDRMI 306
N ++++LC+ G V+E +L ++ K+G +P++ TY+ F + L + E+ G + +I
Sbjct: 219 FNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLI 278
Query: 307 ESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLD 366
E G +P + TY L+ + + V KM G PD + YN L+ GM+
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQ 338
Query: 367 MARK 370
+A +
Sbjct: 339 LAER 342
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 153/336 (45%), Gaps = 12/336 (3%)
Query: 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQE 122
+PN T+ + + ++ A+ L E G K D ++Y NL+ LC+ EA E
Sbjct: 248 LPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA-E 306
Query: 123 LCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
+ G+ N G + YN ++ G+ K + G V D +Y
Sbjct: 307 VYLGKMVNEGLE-----PDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRS 361
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
+D +C G+ +A+ L+ E KGIK +V+ YNT+I+ + + A ++ EM E G
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCF---FRCLEKPREIL 299
P V T N ++ LC+ G V +A ++ M KG PD+ T++ + K L
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENAL 481
Query: 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
+ D M+++G+ P + TY LL + V +K M E GC+P+ F +N L+++L
Sbjct: 482 EILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Query: 360 IDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQG 395
LD A EEM K S P L+ G
Sbjct: 542 CRYRKLDEALGLLEEM--KNKSVNPDAVTFGTLIDG 575
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 158/358 (44%), Gaps = 20/358 (5%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM----- 87
TYN++I L K +F + + +M N P+ T+ + Y +V A
Sbjct: 288 TYNNLIYGLCKNSKFQEAEVYLGKMV-NEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGD 346
Query: 88 GTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNM 147
FN + D+ +Y +L+D LC A L F E G V +YN
Sbjct: 347 AVFNGF----VPDQFTYRSLIDGLCHEGETNRALAL-FNEALGKGIKPNV-----ILYNT 396
Query: 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207
+++G + + EM ++G++ ++ +++I ++ +CK G A L K M KG
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
Query: 208 IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAY 267
D+ +N +I ++ A+ + M + G P V T N+++ LC+ + +
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVM 516
Query: 268 AVLAEMPKKGCVPDVITYHCFFRCLEKPR---EILGLFDRMIESGIRPKMDTYVMLLRKF 324
M +KGC P++ T++ L + R E LGL + M + P T+ L+ F
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGF 576
Query: 325 GRWGFLRPVFVVWKKMEEL-GCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
+ G L + +++KMEE S YN ++ A +K + MA K +EM + L
Sbjct: 577 CKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG 634
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 15/261 (5%)
Query: 115 KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEM-DKRGV 173
K ++A E+ K VGF + ++ I K+ ++GK E + D R
Sbjct: 18 KDPMKALEMFNSMRKEVGFKHTLSTYRSVIE--------KLGYYGKFEAMEEVLVDMREN 69
Query: 174 VKDLHSYSIYMDIM---CKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDF 230
V + +Y+ M + GK +AV +++ M + V +YN ++ + S D
Sbjct: 70 VGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQ 129
Query: 231 AMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR 290
A +VY MR+ G P V + +K C+ R A +L M +GC +V+ Y
Sbjct: 130 AHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVG 189
Query: 291 CLEKPR---EILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSP 347
+ E LF +M+ SG+ + T+ LLR + G ++ + K+ + G P
Sbjct: 190 GFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLP 249
Query: 348 DEFAYNALVDALIDKGMLDMA 368
+ F YN + L +G LD A
Sbjct: 250 NLFTYNLFIQGLCQRGELDGA 270
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 138/350 (39%), Gaps = 70/350 (20%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY S+ID L E + + L + PN + + K ++ EA N+
Sbjct: 358 TYRSLIDGLCHEGETNRALALFNEALGKGIK-PNVILYNTLIKGLSNQGMILEAAQLANE 416
Query: 93 LDEFGLKDEVSYCN-LVDALCEYKHVIEAQELC------------FGENKNV-GFSGLVE 138
+ E GL EV N LV+ LC+ V +A L F N + G+S ++
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLK 476
Query: 139 M-NKTKI---------------YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
M N +I YN +L G K S + E ++ M ++G +L +++I
Sbjct: 477 MENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNI 536
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVA---------------------------- 214
++ +C+ K +A+ L +EMK K + D V
Sbjct: 537 LLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAY 596
Query: 215 --------YNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREA 266
YN +I A V A ++++EM + P T ++ C+ G V
Sbjct: 597 KVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLG 656
Query: 267 YAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPK 313
Y L EM + G +P + T CL ++ E G+ RM++ G+ P+
Sbjct: 657 YKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 108/274 (39%), Gaps = 56/274 (20%)
Query: 19 NWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYV 78
N V+ D + TYNS+++ L K +F+ M + + PN TF I+ +
Sbjct: 490 NGVDPDVY------TYNSLLNGLCKTSKFEDVMETYKTMVEKGCA-PNLFTFNILLESLC 542
Query: 79 TAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLV 137
++EA+G ++ + D V++ L+D C+ + A L F +
Sbjct: 543 RYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL---------FRKME 593
Query: 138 EMNK----TKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP 193
E K T YN+I+ + + + ++EM R + D ++Y + +D CK+G
Sbjct: 594 EAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGN- 652
Query: 194 WKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTV 253
V+ + EM E G PS+ T V
Sbjct: 653 ----------------------------------VNLGYKFLLEMMENGFIPSLTTLGRV 678
Query: 254 IKLLCENGRVREAYAVLAEMPKKGCVPDVITYHC 287
I LC RV EA ++ M +KG VP+ + C
Sbjct: 679 INCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTIC 712
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 158/320 (49%), Gaps = 10/320 (3%)
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQEL 123
P+H F I+ Y V++AM F+K+ + GL + V+Y ++ LC+ V +A L
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM-L 427
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
F + + G S +YN ++ G + W + E EM RG+ + ++
Sbjct: 428 YFEQMIDEGLS-----PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482
Query: 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243
+D CK G+ ++ KL++ M + G+K +V+ YNT+I ++ +D AM++ M +G
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542
Query: 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG--- 300
+P+ VT +T+I C+ R+ +A + EM G PD+ITY+ + L + R
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360
L+ R+ ESG + ++ TY ++L + +++ + + + +N ++DAL+
Sbjct: 603 LYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALL 662
Query: 361 DKGMLDMARKYDEEMFAKGL 380
G D A+ + GL
Sbjct: 663 KVGRNDEAKDLFVAFSSNGL 682
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 148/310 (47%), Gaps = 9/310 (2%)
Query: 90 FNKLDEFG-LKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148
++ E G + + SY L+ LC+ EA EL + G ++ Y +
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS---YTTV 202
Query: 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI 208
+ G+FK K + EM RG++ D+ +Y+ + +CK+ KA+++ M K G+
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262
Query: 209 KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYA 268
D + YN+++ S A+ ++MR G +P VVT + ++ LC+NGR EA
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 269 VLAEMPKKGCVPDVITYHCFFRCLEKPR---EILGLFDRMIESGIRPKMDTYVMLLRKFG 325
+ M K+G P++ TY + E+ GL D M+ +GI P + +L+ +
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA 382
Query: 326 RWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPR 385
+ G + +V+ KM + G +P+ Y A++ L G ++ A Y E+M +GLS P
Sbjct: 383 KQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLS--PG 440
Query: 386 EELGTKLVQG 395
+ L+ G
Sbjct: 441 NIVYNSLIHG 450
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/390 (25%), Positives = 172/390 (44%), Gaps = 55/390 (14%)
Query: 50 SWNLIHRMKDN--PSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK-LDEFGLKDEVSYCN 106
+ L+H M D+ S P+ ++ + + ++A T+++ LD L D V+Y +
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236
Query: 107 LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE 166
++ ALC+ + + +A E+ KN G+ M YN IL G+ + F +
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKN----GV--MPDCMTYNSILHGYCSSGQPKEAIGFLK 290
Query: 167 EMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVG--- 223
+M GV D+ +YS+ MD +CK+G+ +A K++ M K+G+K ++ Y T+++
Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350
Query: 224 ------------VSEG--------------------VDFAMRVYREMREMGCQPSVVTCN 251
V G VD AM V+ +MR+ G P+ VT
Sbjct: 351 ALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYG 410
Query: 252 TVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL------EKPREILGLFDRM 305
VI +LC++GRV +A +M +G P I Y+ L E+ E L M
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE---LILEM 467
Query: 306 IESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGML 365
++ GI + ++ + G + +++ M +G P+ YN L++ G +
Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527
Query: 366 DMARKYDEEMFAKGLSAKPREELGTKLVQG 395
D A K M + GL KP + L+ G
Sbjct: 528 DEAMKLLSGMVSVGL--KPNTVTYSTLING 555
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 115/268 (42%), Gaps = 50/268 (18%)
Query: 173 VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAM 232
V DL +Y I + C++G+ + KKG ++D +A+ +++ + + AM
Sbjct: 83 VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142
Query: 233 R-VYREMREMGCQPSVVTCNTVIKLLCENGRVRE-------------------------- 265
V R M E+GC P+V + N ++K LC+ R +E
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202
Query: 266 ------------AYAVLAEMPKKGCVPDVITYH------CFFRCLEKPREILGLFDRMIE 307
AY+ EM +G +PDV+TY+ C + ++K E+L + M++
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL---NTMVK 259
Query: 308 SGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDM 367
+G+ P TY +L + G + KKM G PD Y+ L+D L G
Sbjct: 260 NGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCME 319
Query: 368 ARKYDEEMFAKGLSAKPREELGTKLVQG 395
ARK + M +GL KP L+QG
Sbjct: 320 ARKIFDSMTKRGL--KPEITTYGTLLQG 345
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 160/380 (42%), Gaps = 51/380 (13%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C + + A+ +F + D + YNS+I L +++ + LI M D +
Sbjct: 417 CKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL- 474
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELC 124
N F + + V E+ F + G+K V +Y L++ C + EA +L
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKL- 533
Query: 125 FGENKNVGFSGLVEMN---KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYS 181
SG+V + T Y+ ++ G+ K+S ++EM+ GV D+ +Y+
Sbjct: 534 --------LSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYN 585
Query: 182 IYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241
I + + ++ + A +LY + + G ++++ YN ++ + ++ D A+++++ + M
Sbjct: 586 IILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLM 645
Query: 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGL 301
+ T N +I L + GR EA + G VP+ TY +
Sbjct: 646 DLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRL-------------M 692
Query: 302 FDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID 361
+ +I G+ ++D ++ ME+ GC+ D N +V L+
Sbjct: 693 AENIIGQGLLEELDQ-------------------LFLSMEDNGCTVDSGMLNFIVRELLQ 733
Query: 362 KGMLDMARKY----DEEMFA 377
+G + A Y DE+ F+
Sbjct: 734 RGEITRAGTYLSMIDEKHFS 753
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 169/363 (46%), Gaps = 14/363 (3%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C+ N A+ + + + + T+N++I L + + L+ RM P
Sbjct: 162 CHGNRISDAVSLVGQM-VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ-P 219
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVS-YCNLVDALCEYKHVIEAQELC 124
+ T+ I+ ++ A+ K+++ ++ V Y ++DALC YK+V +A L
Sbjct: 220 DLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL- 278
Query: 125 FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYM 184
F E N G V YN ++R W +M +R + ++ ++S +
Sbjct: 279 FTEMDNKGIRPNV-----VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 333
Query: 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ 244
D K GK +A KLY EM K+ I D+ Y+++I + + +D A ++ M C
Sbjct: 334 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 393
Query: 245 PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY----HCFFRCLEKPREILG 300
P+VVT NT+IK C+ RV E + EM ++G V + +TY H FF+ E +
Sbjct: 394 PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI- 452
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360
+F +M+ G+ P + TY +LL G + VV++ ++ PD + YN +++ +
Sbjct: 453 VFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMC 512
Query: 361 DKG 363
G
Sbjct: 513 KAG 515
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 170/351 (48%), Gaps = 11/351 (3%)
Query: 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKL 93
++ ++ + K +FDL +L +M+ N N T+ I+ + ++ A+ K+
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLSLALAVLAKM 142
Query: 94 DEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152
+ G + D V+ +L++ C + +A L G+ +G+ + +N ++ G
Sbjct: 143 MKLGYEPDIVTLNSLLNGFCHGNRISDAVSL-VGQMVEMGYQP-----DSFTFNTLIHGL 196
Query: 153 FKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV 212
F+ + + + M +G DL +Y I ++ +CK G A+ L K+M++ I+ V
Sbjct: 197 FRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGV 256
Query: 213 VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE 272
V YNT+I A+ + V+ A+ ++ EM G +P+VVT N++I+ LC GR +A +L++
Sbjct: 257 VIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 316
Query: 273 MPKKGCVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYVMLLRKFGRWGF 329
M ++ P+V+T+ K +++ L+D MI+ I P + TY L+ F
Sbjct: 317 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 376
Query: 330 LRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
L +++ M C P+ YN L+ +D + EM +GL
Sbjct: 377 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 164/364 (45%), Gaps = 34/364 (9%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY V++ L K + DL+ +L+ +M+ P + + VN+A+ F +
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIE-PGVVIYNTIIDALCNYKNVNDALNLFTE 281
Query: 93 LDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGE-----NKNV-GFSGLV-------- 137
+D G++ + V+Y +L+ LC Y +A L N NV FS L+
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 138 ---------EMNKTKI------YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
EM K I Y+ ++ G+ + + +E M + ++ +Y+
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
+ CK+ + + ++L++EM ++G+ + V Y T+I + D A V+++M G
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG-- 300
P ++T + ++ LC NG+V A V + + PD+ TY+ + K ++
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGW 521
Query: 301 -LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
LF + G++P + TY ++ F R G ++++M+E G PD YN L+ A
Sbjct: 522 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAH 581
Query: 360 IDKG 363
+ G
Sbjct: 582 LRDG 585
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 142/309 (45%), Gaps = 12/309 (3%)
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQEL 123
P+ TF + + +EA+ +++ G + D V+Y +V+ LC+ + A L
Sbjct: 184 PDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSL 243
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
+ G+V IYN I+ + EMD +G+ ++ +Y+
Sbjct: 244 LKKMEQGKIEPGVV------IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 297
Query: 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG-VDFAMRVYREMREMG 242
+ +C G+ A +L +M ++ I +VV ++ +I A V EG + A ++Y EM +
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAF-VKEGKLVEAEKLYDEMIKRS 356
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREI---L 299
P + T +++I C + R+ EA + M K C P+V+TY+ + K + + +
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416
Query: 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
LF M + G+ TY L+ F + +V+K+M G PD Y+ L+D L
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476
Query: 360 IDKGMLDMA 368
+ G ++ A
Sbjct: 477 CNNGKVETA 485
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 3/221 (1%)
Query: 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222
+ +M K + +S + + K K + L ++M+ GI ++ Y+ +I
Sbjct: 67 NLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCF 126
Query: 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV 282
+ A+ V +M ++G +P +VT N+++ C R+ +A +++ +M + G PD
Sbjct: 127 CRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDS 186
Query: 283 ITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKK 339
T++ L + E + L DRM+ G +P + TY +++ + G + + KK
Sbjct: 187 FTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKK 246
Query: 340 MEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
ME+ P YN ++DAL + ++ A EM KG+
Sbjct: 247 MEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 3/183 (1%)
Query: 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255
AV L+ +M K +V ++ ++ A+ D + + +M+ +G ++ T + +I
Sbjct: 65 AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124
Query: 256 LLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRP 312
C ++ A AVLA+M K G PD++T + + + + L +M+E G +P
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 313 KMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYD 372
T+ L+ R + +M GC PD Y +V+ L +G +D+A
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244
Query: 373 EEM 375
++M
Sbjct: 245 KKM 247
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 116/256 (45%), Gaps = 14/256 (5%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY+S+I+ D + ++ M + PN T+ + K + A V+E M F +
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMI-SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFRE 421
Query: 93 LDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151
+ + GL + V+Y L+ + + AQ + F + + G + Y+++L G
Sbjct: 422 MSQRGLVGNTVTYTTLIHGFFQARECDNAQ-IVFKQMVSDGV-----LPDIMTYSILLDG 475
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
+E + + + D+++Y+I ++ MCK+GK L+ + KG+K +
Sbjct: 476 LCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535
Query: 212 VVAYNTVIRAV---GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYA 268
VV Y T++ G+ E D ++REM+E G P T NT+I+ +G +
Sbjct: 536 VVTYTTMMSGFCRKGLKEEAD---ALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAE 592
Query: 269 VLAEMPKKGCVPDVIT 284
++ EM V D T
Sbjct: 593 LIREMRSCRFVGDAST 608
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 3/155 (1%)
Query: 228 VDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHC 287
+D A+ ++ +M + PS+V + ++ + + + ++ +M G ++ TY
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 288 FFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELG 344
C + ++ L + +M++ G P + T LL F + + +M E+G
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 345 CSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
PD F +N L+ L A + M KG
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG 216
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 167/368 (45%), Gaps = 12/368 (3%)
Query: 17 FFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKR 76
FF+W + T +Y+ ++ LG+ F +++ M + P+ I
Sbjct: 137 FFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVN-PDLECLTIAMDS 195
Query: 77 YVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSG 135
+V H V A+ F + + FG+K S+ L+ LCE HV A+ + + N+ F
Sbjct: 196 FVRVHYVRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDS 255
Query: 136 LVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWK 195
YN+++ GW K+ + + +EM + G D SYS ++ + ++G+
Sbjct: 256 CS-------YNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRIND 308
Query: 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255
+V+++ +K KG D YN +I + D +MR YR M + C+P++ T + ++
Sbjct: 309 SVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVS 368
Query: 256 LLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRP 312
L + +V +A + EM +G +P F + L P + ++ + ++G R
Sbjct: 369 GLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRI 428
Query: 313 KMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYD 372
Y +LL++ R+G + VW +M+E G D Y +VD L G L+ A
Sbjct: 429 SESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVM 488
Query: 373 EEMFAKGL 380
EE KG
Sbjct: 489 EEAMRKGF 496
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%)
Query: 143 KIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKE 202
+ Y+ ++ G K E +EEM RGV+ + ++ +C G P A+ +Y++
Sbjct: 361 ETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQK 420
Query: 203 MKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGR 262
+K G ++ AY +++ + + V+ EM+E G V ++ LC G
Sbjct: 421 SRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGH 480
Query: 263 VREAYAVLAEMPKKGCVPDVITY 285
+ A V+ E +KG P+ Y
Sbjct: 481 LENAVLVMEEAMRKGFCPNRFVY 503
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 177/386 (45%), Gaps = 16/386 (4%)
Query: 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN 66
+ +DW+ AL W E+ H++D Y+ +DILGK ++D + RM+ + N
Sbjct: 97 FRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLN 156
Query: 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV-DALCEYKHVIEAQELCF 125
T + +R+ A EA+G F++L EFGL+ NL+ D LC+ K V +A+ +
Sbjct: 157 --TVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLL 214
Query: 126 GENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMD 185
++ + +N+ + GW K + + +EM G + SY+ +
Sbjct: 215 QLKSHITPNA-------HTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIR 267
Query: 186 IMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP 245
C+ + K ++ EM+ G + + Y T++ ++ + + A+RV M+ GC+P
Sbjct: 268 CYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKP 327
Query: 246 SVVTCNTVIKLLCENGRVREAYAVL-AEMPKKGCVPDVITYHCFFRCL---EKPREILGL 301
+ N +I L GR+ EA V EMP+ G + TY+ ++ + + L
Sbjct: 328 DSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIEL 387
Query: 302 FDRMIESGI-RPKMDTYVMLLRKFGRWGFLRPVFVVWKKM-EELGCSPDEFAYNALVDAL 359
M S + P + TY LLR + G + V + K+M + S DE Y L+ L
Sbjct: 388 LKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRL 447
Query: 360 IDKGMLDMARKYDEEMFAKGLSAKPR 385
M + A EEM ++ ++ + R
Sbjct: 448 CRANMCEWAYCLFEEMISQDITPRHR 473
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 170/354 (48%), Gaps = 19/354 (5%)
Query: 14 ALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIM 73
AL+ F ++ D TYN +ID+L + + D ++ L M+ PN T IM
Sbjct: 362 ALKVFEEMKKDA--APNLSTYNILIDMLCRAGKLDTAFELRDSMQ-KAGLFPNVRTVNIM 418
Query: 74 FKRYVTAHLVNEAMGTFNKLD-EFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVG 132
R + ++EA F ++D + DE+++C+L+D L + V +A ++
Sbjct: 419 VDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKV--------- 469
Query: 133 FSGLVEMN---KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189
+ +++ + + +Y +++ +F + +++M + DL + YMD M K
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFK 529
Query: 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVT 249
+G+P K +++E+K + D +Y+ +I + + + ++ M+E GC
Sbjct: 530 AGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 589
Query: 250 CNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILGLFDRMI 306
N VI C+ G+V +AY +L EM KG P V+TY L K E LF+
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 649
Query: 307 ESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360
I + Y L+ FG+ G + +++ +++ + G +P+ + +N+L+DAL+
Sbjct: 650 SKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALV 703
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 160/370 (43%), Gaps = 12/370 (3%)
Query: 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT 69
D RA+E+F W E H ++YNS++ ++ + FD ++ M P+ T
Sbjct: 77 DVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFG-PSVNT 135
Query: 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVS-YCNLVDALCEYKHVIEAQELCFGEN 128
M V A+ + E + +F + S Y L+ A H L F +
Sbjct: 136 CIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTL-FQQM 194
Query: 129 KNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188
+ +G+ V + + ++RG+ K +EM + D+ Y++ +D
Sbjct: 195 QELGYEPTVHL-----FTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249
Query: 189 KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVV 248
K GK A K + E++ G+K D V Y ++I + + +D A+ ++ + + P
Sbjct: 250 KVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTY 309
Query: 249 TCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLE---KPREILGLFDRM 305
NT+I G+ EAY++L KG +P VI Y+C CL K E L +F+ M
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369
Query: 306 IESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGML 365
+ P + TY +L+ R G L F + M++ G P+ N +VD L L
Sbjct: 370 KKDAA-PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKL 428
Query: 366 DMARKYDEEM 375
D A EEM
Sbjct: 429 DEACAMFEEM 438
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 127/264 (48%), Gaps = 5/264 (1%)
Query: 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYK 201
+ Y++++ G K + + E + M ++G V D +Y+I +D CK GK KA +L +
Sbjct: 552 ARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLE 611
Query: 202 EMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENG 261
EMK KG + VV Y +VI + + +D A ++ E + + +VV +++I + G
Sbjct: 612 EMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVG 671
Query: 262 RVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREI---LGLFDRMIESGIRPKMDTYV 318
R+ EAY +L E+ +KG P++ T++ L K EI L F M E P TY
Sbjct: 672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731
Query: 319 MLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378
+L+ + FV W++M++ G P +Y ++ L G + A + A
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791
Query: 379 GLSAKPREELGTKLVQGGLDGEQS 402
G P +++G +G ++
Sbjct: 792 G--GVPDSACYNAMIEGLSNGNRA 813
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 3/242 (1%)
Query: 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYK 201
T+ YN+++ G+ K K + EEM +G + +Y +D + K + +A L++
Sbjct: 587 TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE 646
Query: 202 EMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENG 261
E K K I+++VV Y+++I G +D A + E+ + G P++ T N+++ L +
Sbjct: 647 EAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAE 706
Query: 262 RVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLF---DRMIESGIRPKMDTYV 318
+ EA M + C P+ +TY L K R+ F M + G++P +Y
Sbjct: 707 EINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYT 766
Query: 319 MLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378
++ + G + ++ + + G PD YNA+++ L + A EE +
Sbjct: 767 TMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826
Query: 379 GL 380
GL
Sbjct: 827 GL 828
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 8/252 (3%)
Query: 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86
F T TY SVID L K D ++ L K + N + + + ++EA
Sbjct: 618 FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL-NVVIYSSLIDGFGKVGRIDEA 676
Query: 87 MGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145
+L + GL + ++ +L+DAL + + + EA +CF K + + Y
Sbjct: 677 YLILEELMQKGLTPNLYTWNSLLDALVKAEEINEAL-VCFQSMKELKCTP-----NQVTY 730
Query: 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205
+++ G K+ + K FW+EM K+G+ SY+ + + K+G +A L+ K
Sbjct: 731 GILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKA 790
Query: 206 KGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE 265
G D YN +I + A ++ E R G TC ++ L +N + +
Sbjct: 791 NGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQ 850
Query: 266 AYAVLAEMPKKG 277
A V A + + G
Sbjct: 851 AAIVGAVLRETG 862
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 5/183 (2%)
Query: 214 AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEM 273
+YN+++ + D ++ EM G PSV TC ++ + ++RE Y V+ M
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159
Query: 274 PKKGCVPDVITYHCF---FRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFL 330
K P Y F + +L LF +M E G P + + L+R F + G +
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219
Query: 331 RPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGT 390
+ +M+ D YN +D+ G +DMA K+ E+ A GL KP E T
Sbjct: 220 DSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGL--KPDEVTYT 277
Query: 391 KLV 393
++
Sbjct: 278 SMI 280
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 11/231 (4%)
Query: 159 GKCREF------WEEMDKRGVVKDLHSYSIYMDIMC-KSGKPWKAVKLYKEMKKKGIKMD 211
+CR F EM G +++ I M + C K+ K + + + M+K +
Sbjct: 109 ARCRNFDALDQILGEMSVAGFGPSVNT-CIEMVLGCVKANKLREGYDVVQMMRKFKFRPA 167
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
AY T+I A D + ++++M+E+G +P+V T+I+ + GRV A ++L
Sbjct: 168 FSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLD 227
Query: 272 EMPKKGCVPDVITYHCFFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWG 328
EM D++ Y+ K ++ F + +G++P TY ++ +
Sbjct: 228 EMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKAN 287
Query: 329 FLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
L +++ +E+ P +AYN ++ G D A E AKG
Sbjct: 288 RLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG 338
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 166/345 (48%), Gaps = 44/345 (12%)
Query: 14 ALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIM 73
A+ FN + T+ T YN+++ +L K D + + RM + PN T+ ++
Sbjct: 289 AVGLFNEMITE-GLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCR-PNEYTYSLL 346
Query: 74 F-------------------KRYVTAHLVNEAMGTFNKLDE-------------FGLKDE 101
KRY+T + + + T +KL F +K E
Sbjct: 347 LNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGE 406
Query: 102 V-SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGK 160
SY +++++LC IEA E+ + G+V T +YN + K+
Sbjct: 407 RDSYMSMLESLCGAGKTIEAIEML----SKIHEKGVV--TDTMMYNTVFSALGKLKQISH 460
Query: 161 CREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIR 220
+ +E+M K G D+ +Y+I + + G+ +A+ +++E+++ K D+++YN++I
Sbjct: 461 IHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLIN 520
Query: 221 AVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP 280
+G + VD A ++EM+E G P VVT +T+++ + RV AY++ EM KGC P
Sbjct: 521 CLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQP 580
Query: 281 DVITYHCFFRCLEK---PREILGLFDRMIESGIRPKMDTYVMLLR 322
+++TY+ CLEK E + L+ +M + G+ P TY +L R
Sbjct: 581 NIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVLER 625
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 168/357 (47%), Gaps = 22/357 (6%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY +I +G+ + D + L + M ++ N + + + +V++A+ F++
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMITEGLTL-NVVGYNTLMQVLAKGKMVDKAIQVFSR 330
Query: 93 LDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK----TKIYNM 147
+ E G + +E +Y L++ L E + V G+VE++K IY+
Sbjct: 331 MVETGCRPNEYTYSLLLN-------------LLVAEGQLVRLDGVVEISKRYMTQGIYSY 377
Query: 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207
++R K+ + + +M V + SY ++ +C +GK +A+++ ++ +KG
Sbjct: 378 LVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKG 437
Query: 208 IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAY 267
+ D + YNTV A+G + + ++ +M++ G P + T N +I G V EA
Sbjct: 438 VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAI 497
Query: 268 AVLAEMPKKGCVPDVITYHCFFRCLEKPREILGL---FDRMIESGIRPKMDTYVMLLRKF 324
+ E+ + C PD+I+Y+ CL K ++ F M E G+ P + TY L+ F
Sbjct: 498 NIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECF 557
Query: 325 GRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
G+ + + ++++M GC P+ YN L+D L G A +M +GL+
Sbjct: 558 GKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLT 614
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 138/307 (44%), Gaps = 73/307 (23%)
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
YNM+L K K + +E+M KR +D ++Y+I + M + GK +AV L+ EM
Sbjct: 241 YNMLLDALAKDE---KACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMI 297
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGR-- 262
+G+ ++VV YNT+++ + + VD A++V+ M E GC+P+ T + ++ LL G+
Sbjct: 298 TEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLV 357
Query: 263 ------------------------------VREAYAVLAEM---PKKG------------ 277
V EA+ + +M P KG
Sbjct: 358 RLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESL 417
Query: 278 --------------------CVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKM 314
V D + Y+ F L K ++I LF++M + G P +
Sbjct: 418 CGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDI 477
Query: 315 DTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEE 374
TY +L+ FGR G + +++++E C PD +YN+L++ L G +D A +E
Sbjct: 478 FTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKE 537
Query: 375 MFAKGLS 381
M KGL+
Sbjct: 538 MQEKGLN 544
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 11/224 (4%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMK-DNPSSI 64
C A A+E + + T T YN+V LGK + +L +MK D PS
Sbjct: 418 CGAGKTIEAIEMLSKIHEKGVVTDTM-MYNTVFSALGKLKQISHIHDLFEKMKKDGPS-- 474
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQEL 123
P+ T+ I+ + V+EA+ F +L+ K D +SY +L++ L + V EA +
Sbjct: 475 PDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAH-V 533
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
F E + G + V Y+ ++ + K +EEM +G ++ +Y+I
Sbjct: 534 RFKEMQEKGLNPDV-----VTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNIL 588
Query: 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG 227
+D + K+G+ +AV LY +MK++G+ D + Y + R VS G
Sbjct: 589 LDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVLERLQSVSHG 632
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 9/211 (4%)
Query: 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNT 217
+ + R + M K V ++ + +I + + ++L +KK +KM+ Y
Sbjct: 152 FDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRL---VKKWDLKMNSFTYKC 208
Query: 218 VIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG 277
+++A S A VY E+R G + + N ++ L ++ +A V +M K+
Sbjct: 209 LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKRH 265
Query: 278 CVPDVITYHCFFRC---LEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334
C D TY R + K E +GLF+ MI G+ + Y L++ + +
Sbjct: 266 CRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAI 325
Query: 335 VVWKKMEELGCSPDEFAYNALVDALIDKGML 365
V+ +M E GC P+E+ Y+ L++ L+ +G L
Sbjct: 326 QVFSRMVETGCRPNEYTYSLLLNLLVAEGQL 356
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 13/318 (4%)
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQEL 123
P+ TF + + + + EAM N++ E G+K D V Y ++D+LC+ HV A L
Sbjct: 140 PDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSL 199
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
F + +N G V M Y ++ G W M KR + D+ +++
Sbjct: 200 -FDQMENYGIRPDVVM-----YTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNAL 253
Query: 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243
+D K GK A +LY EM + I ++ Y ++I + VD A +++ M GC
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGC 313
Query: 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCF---FRCLEKPREILG 300
P VV ++I C+ +V +A + EM +KG + ITY F + KP
Sbjct: 314 FPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQE 373
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL---GCSPDEFAYNALVD 357
+F M+ G+ P + TY +LL G ++ ++++ M++ G +P+ + YN L+
Sbjct: 374 VFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLH 433
Query: 358 ALIDKGMLDMARKYDEEM 375
L G L+ A E+M
Sbjct: 434 GLCYNGKLEKALMVFEDM 451
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 108 VDALCEYKHVIE--AQELCFGENKNVGFSGLVE-------MNKTKIYNMILRGWFKMSWW 158
V A C Y+ ++ L F E ++ F+ +VE ++ TK+ N+I KM +
Sbjct: 34 VRAFCNYREILRNGLHSLQFNEALDL-FTHMVESRPLPSIIDFTKLLNVIA----KMKKF 88
Query: 159 GKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV 218
+ + GV DL++ ++ M+ C+S +P+ A +M K G + D+V + ++
Sbjct: 89 DVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSL 148
Query: 219 IRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRV--------------- 263
I + ++ AM + +M EMG +P VV T+I LC+NG V
Sbjct: 149 INGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGI 208
Query: 264 --------------------REAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG--- 300
R+A ++L M K+ PDVIT++ K + L
Sbjct: 209 RPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEE 268
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360
L++ MI I P + TY L+ F G + ++ ME GC PD AY +L++
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFC 328
Query: 361 DKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQG 395
+D A K EM KGL+ T L+QG
Sbjct: 329 KCKKVDDAMKIFYEMSQKGLTGNTITY--TTLIQG 361
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 146/335 (43%), Gaps = 71/335 (21%)
Query: 83 VNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKN------VGFSG 135
VN A+ F++++ +G++ D V Y +LV+ LC +A L G K + F+
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252
Query: 136 LVE--------MNKTKIYNMILR---------------GWFKMSWWGKCREFWEEMDKRG 172
L++ ++ ++YN ++R G+ + R+ + M+ +G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 173 VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAM 232
D+ +Y+ ++ CK K A+K++ EM +KG+ + + Y T+I+ G + A
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372
Query: 233 RVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK---GCVPDVITYH--- 286
V+ M G P++ T N ++ LC NG+V++A + +M K+ G P++ TY+
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432
Query: 287 ---CFFRCLEKP--------------------------------REILGLFDRMIESGIR 311
C+ LEK + + LF + G++
Sbjct: 433 HGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVK 492
Query: 312 PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCS 346
P + TY ++ R G V+++KM+E G S
Sbjct: 493 PNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/402 (23%), Positives = 195/402 (48%), Gaps = 19/402 (4%)
Query: 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT 69
D +F++ +E D H T+ ++D L K F +++ + M+D +PN T
Sbjct: 343 DLDSVKQFWSEMEKDGHVPDVV-TFTILVDALCKAGNFGEAFDTLDVMRDQ-GILPNLHT 400
Query: 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGEN 128
+ + + H +++A+ F ++ G+K +Y +D + + A E F +
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE-TFEKM 459
Query: 129 KNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188
K G + + +Y++ G + + ++ + + G+V D +Y++ M
Sbjct: 460 KTKGIAPNIVACNASLYSLAKAGRDR-----EAKQIFYGLKDIGLVPDSVTYNMMMKCYS 514
Query: 189 KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVV 248
K G+ +A+KL EM + G + DV+ N++I + ++ VD A +++ M+EM +P+VV
Sbjct: 515 KVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVV 574
Query: 249 TCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREI---LGLFDRM 305
T NT++ L +NG+++EA + M +KGC P+ IT++ F CL K E+ L + +M
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634
Query: 306 IESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGML 365
++ G P + TY ++ + G ++ + +M++L PD L+ ++ ++
Sbjct: 635 MDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLI 693
Query: 366 DMARKYDEEMFAKGLSAKP-----REELGTKLVQGGLDGEQS 402
+ A K F + +P + +G+ L + G+D S
Sbjct: 694 EDAYKIITN-FLYNCADQPANLFWEDLIGSILAEAGIDNAVS 734
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 176/392 (44%), Gaps = 46/392 (11%)
Query: 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86
F + TY+S++ LGK + D L+ M + PN TF I + A +NEA
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-ETLGLKPNVYTFTICIRVLGRAGKINEA 277
Query: 87 MGTFNKLDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145
++D+ G D V+Y L+DALC + + A+E+ F + K +G + ++ Y
Sbjct: 278 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV-FEKMK----TGRHKPDRVT-Y 331
Query: 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205
+L + ++FW EM+K G V D+ +++I +D +CK+G +A M+
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD 391
Query: 206 KGIKMDVVAYNTVI-------------------RAVGVSEG-------VDF--------- 230
+GI ++ YNT+I ++GV +D+
Sbjct: 392 QGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS 451
Query: 231 AMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR 290
A+ + +M+ G P++V CN + L + GR REA + + G VPD +TY+ +
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511
Query: 291 CLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSP 347
C K EI + L M+E+G P + L+ + + + ++ +M+E+ P
Sbjct: 512 CYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Query: 348 DEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
YN L+ L G + A + E M KG
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 138/297 (46%), Gaps = 19/297 (6%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TYN ++D GK + D + L M + N T I+ V A V++A+ +
Sbjct: 822 TYNFLLDAYGKSGKIDELFELYKEMSTHECE-ANTITHNIVISGLVKAGNVDDALDLYYD 880
Query: 93 L--DEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN---KTKIYNM 147
L D +Y L+D L + + EA++L F G+++ IYN+
Sbjct: 881 LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQL---------FEGMLDYGCRPNCAIYNI 931
Query: 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207
++ G+ K ++ M K GV DL +YS+ +D +C G+ + + +KE+K+ G
Sbjct: 932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Query: 208 IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR-EMGCQPSVVTCNTVIKLLCENGRVREA 266
+ DVV YN +I +G S ++ A+ ++ EM+ G P + T N++I L G V EA
Sbjct: 992 LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051
Query: 267 YAVLAEMPKKGCVPDVITYHCFFRCLE---KPREILGLFDRMIESGIRPKMDTYVML 320
+ E+ + G P+V T++ R KP ++ M+ G P TY L
Sbjct: 1052 GKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 167/383 (43%), Gaps = 25/383 (6%)
Query: 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDIL---GKFFE----FDLSWNLIHRMKDNPS 62
D + +F V + + HTT+T N +++ L GK E FDL I + N
Sbjct: 97 DTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTN-- 154
Query: 63 SIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG-LKDEVSYCNLVDALCEYKHVIEAQ 121
T+ +FK + +A K+ EFG + + SY L+ L + + EA
Sbjct: 155 ------TYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAM 208
Query: 122 ELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYS 181
E+ + + G +T Y+ ++ G K +EM+ G+ ++++++
Sbjct: 209 EV----YRRMILEGFRPSLQT--YSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFT 262
Query: 182 IYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241
I + ++ ++GK +A ++ K M +G DVV Y +I A+ + +D A V+ +M+
Sbjct: 263 ICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTG 322
Query: 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REI 298
+P VT T++ +N + +EM K G VPDV+T+ L K E
Sbjct: 323 RHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 382
Query: 299 LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDA 358
D M + GI P + TY L+ R L ++ ME LG P + Y +D
Sbjct: 383 FDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442
Query: 359 LIDKGMLDMARKYDEEMFAKGLS 381
G A + E+M KG++
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIA 465
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 174/407 (42%), Gaps = 40/407 (9%)
Query: 12 KRALEFF-NWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATF 70
+ A+E F V+ C T T+N++ D L K E L+ ++ +M D +P+ T+
Sbjct: 590 QEAIELFEGMVQKGC--PPNTITFNTLFDCLCKNDEVTLALKMLFKMMDM-GCVPDVFTY 646
Query: 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQEL------- 123
+ V V EAM F+++ + D V+ C L+ + + + +A ++
Sbjct: 647 NTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYN 706
Query: 124 CFGENKNV-------------GFSGLVEMNKTKIYN-----------MILRGWFKMSWWG 159
C + N+ G V ++ + N I+R K +
Sbjct: 707 CADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVS 766
Query: 160 KCREFWEEMDKR-GVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV 218
R +E+ K GV L +Y++ + + ++ A ++ ++K G DV YN +
Sbjct: 767 GARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFL 826
Query: 219 IRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE-MPKKG 277
+ A G S +D +Y+EM C+ + +T N VI L + G V +A + + M +
Sbjct: 827 LDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 886
Query: 278 CVPDVITYHCFFRCLEKP---REILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334
P TY L K E LF+ M++ G RP Y +L+ FG+ G
Sbjct: 887 FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946
Query: 335 VVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
++K+M + G PD Y+ LVD L G +D Y +E+ GL+
Sbjct: 947 ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLN 993
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 49/369 (13%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TYN++I L K + + H+MK P+ T + V A L+ +A
Sbjct: 645 TYNTIIFGLVKNGQVKEAMCFFHQMKK--LVYPDFVTLCTLLPGVVKASLIEDAYKIITN 702
Query: 93 ---------------------LDEFGLKDEVSY---------CNLVDAL--------CEY 114
L E G+ + VS+ C D++ C++
Sbjct: 703 FLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKH 762
Query: 115 KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV 174
+V A+ L K++G K YN+++ G + ++ + ++ G +
Sbjct: 763 NNVSGARTLFEKFTKDLGVQ-----PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCI 817
Query: 175 KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRV 234
D+ +Y+ +D KSGK + +LYKEM + + + +N VI + + VD A+ +
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Query: 235 YRE-MREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLE 293
Y + M + P+ T +I L ++GR+ EA + M GC P+ Y+
Sbjct: 878 YYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 294 KPRE---ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEF 350
K E LF RM++ G+RP + TY +L+ G + +K+++E G +PD
Sbjct: 938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVV 997
Query: 351 AYNALVDAL 359
YN +++ L
Sbjct: 998 CYNLIINGL 1006
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 160/356 (44%), Gaps = 11/356 (3%)
Query: 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSI 64
SC N+ A F D TYN +I L + +++ ++ ++K + I
Sbjct: 759 SCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVK-STGCI 817
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQEL 123
P+ AT+ + Y + ++E + ++ + + +++ ++ L + +V +A +L
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
+ + FS Y ++ G K + ++ +E M G + Y+I
Sbjct: 878 YYDLMSDRDFS-----PTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNIL 932
Query: 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243
++ K+G+ A L+K M K+G++ D+ Y+ ++ + + VD + ++E++E G
Sbjct: 933 INGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGL 992
Query: 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEM-PKKGCVPDVITYHCFFRCLEKP---REIL 299
P VV N +I L ++ R+ EA + EM +G PD+ TY+ L E
Sbjct: 993 NPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAG 1052
Query: 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNAL 355
+++ + +G+ P + T+ L+R + G + V++ M G SP+ Y L
Sbjct: 1053 KIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 179/395 (45%), Gaps = 58/395 (14%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY V++ L K L+ +L +M++ + + I+ ++A+ FN+
Sbjct: 212 TYGPVLNRLCKSGNSALALDLFRKMEERNIK-ASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 93 LDEFGLK-DEVSYCNLVDALCEYKHVIEAQELC---FGEN---KNVGFSGLVEMNKTKIY 145
++ G+K D V+Y +L+ LC + ++ G N V FS L+++
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV------ 324
Query: 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205
+ K + +E + EM RG+ D +Y+ +D CK +A +++ M
Sbjct: 325 ------FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378
Query: 206 KGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE 265
KG + D+V Y+ +I + ++ VD MR++RE+ G P+ +T NT++ C++G++
Sbjct: 379 KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA 438
Query: 266 AYAVLAEMPKKGCVPDVITYHCF----------------FRCLEKPREILG--------- 300
A + EM +G P V+TY F ++K R LG
Sbjct: 439 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 498
Query: 301 -------------LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSP 347
LF + + G++P + TY +++ + G L ++++KM+E GC+P
Sbjct: 499 GMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558
Query: 348 DEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSA 382
D+F YN L+ A + L + + EEM G SA
Sbjct: 559 DDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSA 593
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 142/311 (45%), Gaps = 16/311 (5%)
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQEL 123
P+ T+ + R + A+ F K++E +K V Y ++D+LC+ +A L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
F E + G V Y+ ++ G W + EM R ++ D+ ++S
Sbjct: 268 -FNEMEMKGIKADV-----VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 321
Query: 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243
+D+ K GK +A +LY EM +GI D + YN++I + A +++ M GC
Sbjct: 322 IDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC 381
Query: 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYH------CFFRCLEKPRE 297
+P +VT + +I C+ RV + + E+ KG +P+ ITY+ C L +E
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441
Query: 298 ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVD 357
LF M+ G+ P + TY +LL G L +++KM++ + YN ++
Sbjct: 442 ---LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 498
Query: 358 ALIDKGMLDMA 368
+ + +D A
Sbjct: 499 GMCNASKVDDA 509
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 25/292 (8%)
Query: 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK--------TKIYNMILRG 151
D +++ LV+ C V EA L +VEM + T I + L+G
Sbjct: 139 DTITFSTLVNGFCLEGRVSEAVAL---------VDRMVEMKQRPDLVTVSTLINGLCLKG 189
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
+ + M + G D +Y ++ +CKSG A+ L+++M+++ IK
Sbjct: 190 RVSEALV-----LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKAS 244
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
VV Y+ VI ++ D A+ ++ EM G + VVT +++I LC +G+ + +L
Sbjct: 245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304
Query: 272 EMPKKGCVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYVMLLRKFGRWG 328
EM + +PDV+T+ K ++L L++ MI GI P TY L+ F +
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 329 FLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
L ++ M GC PD Y+ L+++ +D + E+ +KGL
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 416
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 3/220 (1%)
Query: 164 FWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVG 223
F + M+ G+ D+++ +I ++ C+ K A + K G + D + ++T++
Sbjct: 92 FCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFC 151
Query: 224 VSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVI 283
+ V A+ + M EM +P +VT +T+I LC GRV EA ++ M + G PD +
Sbjct: 152 LEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEV 211
Query: 284 TYHCFFRCLEKPRE---ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKM 340
TY L K L LF +M E I+ + Y +++ + G ++ +M
Sbjct: 212 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271
Query: 341 EELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
E G D Y++L+ L + G D K EM + +
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 14/270 (5%)
Query: 31 TDTYNSVIDILGK---FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87
T TYNS+ID K E + ++L+ + P+ T+ I+ Y A V++ M
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMV----SKGCEPDIVTYSILINSYCKAKRVDDGM 405
Query: 88 GTFNKLDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYN 146
F ++ GL + ++Y LV C+ + A+EL F E + G V Y
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL-FQEMVSRGVPPSV-----VTYG 459
Query: 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206
++L G K E +E+M K + + Y+I + MC + K A L+ + K
Sbjct: 460 ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 519
Query: 207 GIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREA 266
G+K DVV YN +I + + A ++R+M+E GC P T N +I+ + +
Sbjct: 520 GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 579
Query: 267 YAVLAEMPKKGCVPDVITYHCFFRCLEKPR 296
++ EM G D T L R
Sbjct: 580 VELIEEMKVCGFSADSSTIKMVIDMLSDRR 609
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 3/185 (1%)
Query: 201 KEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCEN 260
K M+ GI+ D+ +I + + FA V ++G +P +T +T++ C
Sbjct: 94 KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 153
Query: 261 GRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLE-KPREILGLFDRMIESGIRPKMDTY 317
GRV EA A++ M + PD++T CL+ + E L L DRM+E G +P TY
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 318 VMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377
+L + + G +++KMEE Y+ ++D+L G D A EM
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 273
Query: 378 KGLSA 382
KG+ A
Sbjct: 274 KGIKA 278
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255
A+ L++ M + + +N + AV ++ D + + M G + + T +I
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMIN 113
Query: 256 LLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLE-KPREILGLFDRMIESGIRP 312
C ++ A++VL K G PD IT+ CLE + E + L DRM+E RP
Sbjct: 114 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 173
Query: 313 KMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG----MLDMA 368
+ T L+ G + V+ +M E G PDE Y +++ L G LD+
Sbjct: 174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233
Query: 369 RKYDE 373
RK +E
Sbjct: 234 RKMEE 238
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 179/392 (45%), Gaps = 17/392 (4%)
Query: 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH 67
+ ++ + F+ +E C H +YN VI+ L + F ++ +++ +M P+
Sbjct: 82 SKNYDLVISLFHHMEV-CGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYE-PDV 139
Query: 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFG 126
T + + + V +A+ +K++E G + D V Y ++D C+ V +A EL F
Sbjct: 140 VTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVEL-FD 198
Query: 127 ENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186
+ G YN ++ G W +M R +V ++ +++ +D+
Sbjct: 199 RMERDGVRA-----DAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDV 253
Query: 187 MCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS 246
K GK +A+KLY+EM ++ + DV YN++I + + VD A ++ M GC P
Sbjct: 254 FVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPD 313
Query: 247 VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRC---LEKPREILGLFD 303
VVT NT+I C++ RV E + EM ++G V D ITY+ + +P +F
Sbjct: 314 VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 373
Query: 304 RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363
RM RP + TY +LL + V+++ M++ D YN ++ + G
Sbjct: 374 RMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIG 430
Query: 364 MLDMARKYDEEMFAKGLSAKPREELGTKLVQG 395
++ A + KGL KP T ++ G
Sbjct: 431 NVEDAWDLFRSLSCKGL--KPDVVSYTTMISG 460
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 11/249 (4%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
T+ +VID+ K +F + L M P+ T+ + V+EA +
Sbjct: 246 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD-PDVFTYNSLINGLCMHGRVDEAKQMLDL 304
Query: 93 LDEFG-LKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151
+ G L D V+Y L++ C+ K V E +L F E G G T YN I++G
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL-FREMAQRGLVG-----DTITYNTIIQG 358
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
+F+ +E + MD R ++ +YSI + +C + + KA+ L++ M+K I++D
Sbjct: 359 YFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 415
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
+ YN VI + V+ A ++R + G +P VV+ T+I C + ++ +
Sbjct: 416 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 475
Query: 272 EMPKKGCVP 280
+M + G +P
Sbjct: 476 KMQEDGLLP 484
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 38/238 (15%)
Query: 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239
+S + + KS + L+ M+ GI D+ +YN VI + A+ V +M
Sbjct: 72 FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMM 131
Query: 240 EMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFF--RC-LEKPR 296
+ G +P VVT +++I C+ RV +A ++++M + G PDV+ Y+ C +
Sbjct: 132 KFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVN 191
Query: 297 EILGLFDRMIESGIRPKMDTYVMLLRKF---GRWG----FLR------------------ 331
+ + LFDRM G+R TY L+ GRW +R
Sbjct: 192 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 251
Query: 332 PVFV----------VWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
VFV ++++M PD F YN+L++ L G +D A++ + M KG
Sbjct: 252 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 3/187 (1%)
Query: 197 VKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKL 256
+ L+ +M + +V ++ V+ + S+ D + ++ M G + + N VI
Sbjct: 54 IDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINC 113
Query: 257 LCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREI---LGLFDRMIESGIRPK 313
LC R A +V+ +M K G PDV+T + + + L +M E G RP
Sbjct: 114 LCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPD 173
Query: 314 MDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDE 373
+ Y ++ + G + ++ +ME G D YN+LV L G A +
Sbjct: 174 VVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR 233
Query: 374 EMFAKGL 380
+M + +
Sbjct: 234 DMVMRDI 240
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 189/428 (44%), Gaps = 85/428 (19%)
Query: 31 TDTYNSVIDILGKFFEFDLSWN--LIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMG 88
T T+N++I G F E +S L+ RM +N P+ T+ + + + A+
Sbjct: 158 TTTFNTLIK--GLFLEGKVSEAVVLVDRMVENGCQ-PDVVTYNSIVNGICRSGDTSLALD 214
Query: 89 TFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNM 147
K++E +K +V +Y ++D+LC I+A F E + G V YN
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCR-DGCIDAAISLFKEMETKGIKSSV-----VTYNS 268
Query: 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207
++RG K W ++M R +V ++ ++++ +D+ K GK +A +LYKEM +G
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328
Query: 208 IKMDVVAYNT-----------------------------------VIRAVGVSEGVDFAM 232
I +++ YNT +I+ + + VD M
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388
Query: 233 RVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCF---- 288
+V+R + + G + VT + +++ C++G+++ A + EM G +PDV+TY
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448
Query: 289 ------------FRCLEKPREILGL--FDRMIES--------------------GIRPKM 314
F L+K + LG+ + +IE G++P +
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508
Query: 315 DTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEE 374
TY +++ + G L ++ +KMEE G +P++ YN L+ A + G L + K EE
Sbjct: 509 MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568
Query: 375 MFAKGLSA 382
M + G SA
Sbjct: 569 MKSCGFSA 576
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 168/362 (46%), Gaps = 16/362 (4%)
Query: 14 ALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIM 73
A+ F +ET + TYNS++ L K +++ L+ M +PN TF ++
Sbjct: 247 AISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR-EIVPNVITFNVL 304
Query: 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGENKNVG 132
+V + EA + ++ G+ + +Y L+D C + EA + +N
Sbjct: 305 LDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKC 364
Query: 133 FSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192
+V + +++G+ + + + + KRG+V + +YSI + C+SGK
Sbjct: 365 SPDIVT------FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418
Query: 193 PWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNT 252
A +L++EM G+ DV+ Y ++ + + ++ A+ ++ ++++ +V T
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 478
Query: 253 VIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKP---REILGLFDRMIESG 309
+I+ +C+ G+V +A+ + +P KG P+V+TY L K E L +M E G
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538
Query: 310 IRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL----IDKGML 365
P TY L+R R G L + ++M+ G S D + ++D L +DK L
Sbjct: 539 NAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKSFL 598
Query: 366 DM 367
DM
Sbjct: 599 DM 600
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 132/276 (47%), Gaps = 19/276 (6%)
Query: 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEM 168
DA+ ++ +I ++ L + + FS + +TK +N++L +F +++
Sbjct: 71 DAIALFQEMIRSRPLPSLVDFSRFFSAIA---RTKQFNLVL-------------DFCKQL 114
Query: 169 DKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGV 228
+ G+ ++++ +I ++ C+ K A + ++ K G + D +NT+I+ + + V
Sbjct: 115 ELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKV 174
Query: 229 DFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCF 288
A+ + M E GCQP VVT N+++ +C +G A +L +M ++ DV TY
Sbjct: 175 SEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI 234
Query: 289 FRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGC 345
L + I + LF M GI+ + TY L+R + G ++ K M
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294
Query: 346 SPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
P+ +N L+D + +G L A + +EM +G+S
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 192 KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCN 251
K A+ L++EM + +V ++ A+ ++ + + +++ G ++ T N
Sbjct: 68 KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127
Query: 252 TVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIR 311
+I C + AY+VL ++ K G PD T++ + GLF
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIK---------GLF--------- 169
Query: 312 PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG----MLDM 367
G + V+ +M E GC PD YN++V+ + G LD+
Sbjct: 170 --------------LEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDL 215
Query: 368 ARKYDE 373
RK +E
Sbjct: 216 LRKMEE 221
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 170/375 (45%), Gaps = 17/375 (4%)
Query: 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRM-KDNPSSIPNHATFRIMFKRYVTAHLVNE 85
F+ T TYN +I L + DL+ +++++ DN P T+ I+ + + V+E
Sbjct: 189 FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQ--PTVITYTILIEATMLEGGVDE 246
Query: 86 AMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144
A+ +++ GLK D +Y ++ +C+ V A E+ +N+ G
Sbjct: 247 ALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMV----RNLELKGCEP--DVIS 300
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
YN++LR W + + +M ++ +YSI + +C+ GK +A+ L K MK
Sbjct: 301 YNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMK 360
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
+KG+ D +Y+ +I A +D A+ M GC P +V NTV+ LC+NG+
Sbjct: 361 EKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKAD 420
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCL----EKPREILGLFDRMIESGIRPKMDTYVML 320
+A + ++ + GC P+ +Y+ F L +K R L + M+ +GI P TY +
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA-LHMILEMMSNGIDPDEITYNSM 479
Query: 321 LRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
+ R G + F + M P YN ++ ++ A E M G
Sbjct: 480 ISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG- 538
Query: 381 SAKPREELGTKLVQG 395
+P E T L++G
Sbjct: 539 -CRPNETTYTVLIEG 552
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 3/238 (1%)
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
YN ++ G+ KM+ + M + D +Y+I + +C GK A+K+ ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
+ V+ Y +I A + GVD A+++ EM G +P + T NT+I+ +C+ G V
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLL 321
A+ ++ + KGC PDVI+Y+ R L K E L +M P + TY +L+
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340
Query: 322 RKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
R G + + K M+E G +PD ++Y+ L+ A +G LD+A ++ E M + G
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 188 CKSGKPWKAVKLYKEMKKKGIKMDVV---------------------------------- 213
C+SG +++ L + M +KG DV+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVF 159
Query: 214 AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEM 273
AYN +I +D A RV MR P VT N +I LC G++ A VL ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 274 PKKGCVPDVITYHCFFRC--LEKP-REILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFL 330
C P VITY LE E L L D M+ G++P M TY ++R + G +
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279
Query: 331 RPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378
F + + +E GC PD +YN L+ AL+++G + K +MF++
Sbjct: 280 DRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 176/398 (44%), Gaps = 51/398 (12%)
Query: 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA 68
+++ AL FF W++ F H TY +++ LG+ +F L+ M + PN
Sbjct: 337 DNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRD-GCKPNTV 395
Query: 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGE 127
T+ + Y A+ + EAM FN++ E G + D V+YC L+D I A+
Sbjct: 396 TYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLID--------IHAK------ 441
Query: 128 NKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187
+G +++ + ++ M + G+ D +YS+ ++ +
Sbjct: 442 ------AGFLDI---------------------AMDMYQRMQEAGLSPDTFTYSVIINCL 474
Query: 188 CKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSV 247
K+G A +L+ EM +G ++V +N +I + + A+++YR+M+ G QP
Sbjct: 475 GKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 534
Query: 248 VTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGL---FDR 304
VT + V+++L G + EA V AEM +K VPD Y K + +
Sbjct: 535 VTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQA 594
Query: 305 MIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID-KG 363
M+++G+RP + T LL F R + + + + M LG P Y L+ D +
Sbjct: 595 MLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARS 654
Query: 364 MLDMARKYDEEMFAKGLSAKPREELGTKLVQGGLDGEQ 401
DM + ++ A +S P K+ G DG++
Sbjct: 655 NFDMG--FCGQLMA--VSGHPAHMFLLKMPPAGPDGQK 688
>sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800
OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1
Length = 883
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 62/385 (16%)
Query: 33 TYNSVIDILGKFFEFDLSW----NLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMG 88
T+N VI+ L E D + +L H+ ++N +S M K + A ++ A
Sbjct: 503 THNMVIEGLIDAGELDKAEAFYESLEHKSRENDAS---------MVKGFCAAGCLDHAFE 553
Query: 89 TFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148
F +L EF L V Y L +LC K I + +G VE K+ +Y +
Sbjct: 554 RFIRL-EFPLPKSV-YFTLFTSLCAEKDYISKAQDLLDRMWKLG----VEPEKS-MYGKL 606
Query: 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI 208
+ W +++ K REF+E + + +V DL +Y+I ++ C+ +P +A L+++MK++ +
Sbjct: 607 IGAWCRVNNVRKAREFFEILVTKKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDV 666
Query: 209 KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYA 268
K DVV Y+ ++ + D + + REM P VV +I C +++ YA
Sbjct: 667 KPDVVTYSVLLNS-------DPELDMKREMEAFDVIPDVVYYTIMINRYCHLNDLKKVYA 719
Query: 269 VLAEMPKKGCVPDVITYHCFFRCLEKPREILG---------------------------- 300
+ +M ++ VPDV+TY + KP L
Sbjct: 720 LFKDMKRREIVPDVVTYTVLLK--NKPERNLSREMKAFDVKPDVFYYTVLIDWQCKIGDL 777
Query: 301 -----LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNAL 355
+FD+MIESG+ P Y L+ + G+L+ +++ +M E G PD Y AL
Sbjct: 778 GEAKRIFDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFDRMIESGVKPDVVPYTAL 837
Query: 356 VDALIDKGMLDMARKYDEEMFAKGL 380
+ G + A K +EM KG+
Sbjct: 838 IAGCCRNGFVLKAVKLVKEMLEKGI 862
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 153/390 (39%), Gaps = 51/390 (13%)
Query: 47 FDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL-KDEVSYC 105
FD + ++ R + P+ + R + + + +G F +++ GL D +Y
Sbjct: 162 FDEAIDIFFRAYYSLGRAPDIKALNFLISRMIASGRSDMVVGFFWEIERLGLDADAHTYV 221
Query: 106 NLVDAL-------------------------CEYKHVIEAQELCFGENKNVGFSGLVEMN 140
+V AL Y + IE LC + ++ + L +
Sbjct: 222 LVVQALWRNDDKEELEKLLSRLLISETRNPCVFYLNFIEG--LCLNQMTDIAYFLLQPLR 279
Query: 141 KTKI----------YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190
I Y ++RG +M+K G+ D++ YS ++ K+
Sbjct: 280 DANILVDKSDLGIAYRKVVRGLCYEMRIEDAESVVLDMEKHGIDPDVYVYSAIIEGHRKN 339
Query: 191 GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTC 250
KAV ++ +M KK +++ V +++++ A +++E RE V
Sbjct: 340 MNIPKAVDVFNKMLKKRKRINCVIVSSILQCYCQMGNFSEAYDLFKEFRETNISLDRVCY 399
Query: 251 NTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLEKPREILGLFDRMIE- 307
N L + G+V EA + EM KG PDVI Y CL+ + FD MIE
Sbjct: 400 NVAFDALGKLGKVEEAIELFREMTGKGIAPDVINYTTLIGGCCLQG--KCSDAFDLMIEM 457
Query: 308 --SGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGML 365
+G P + Y +L G + F K ME G P +N +++ LID G L
Sbjct: 458 DGTGKTPDIVIYNVLAGGLATNGLAQEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGEL 517
Query: 366 DMARKYDEEMFAKGLSAKPREELGTKLVQG 395
D A E F + L K RE +V+G
Sbjct: 518 DKA-----EAFYESLEHKSREN-DASMVKG 541
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 32/269 (11%)
Query: 144 IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEM 203
I + IL+ + +M + + + ++E + + D Y++ D + K GK +A++L++EM
Sbjct: 363 IVSSILQCYCQMGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREM 422
Query: 204 KKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRV 263
KGI DV+ Y T+I + A + EM G P +V N + L NG
Sbjct: 423 TGKGIAPDVINYTTLIGGCCLQGKCSDAFDLMIEMDGTGKTPDIVIYNVLAGGLATNGLA 482
Query: 264 REAYAVLAEMPKKGCVPDVITYH----------------CFFRCLE-KPRE--------- 297
+EA+ L M +G P +T++ F+ LE K RE
Sbjct: 483 QEAFETLKMMENRGVKPTYVTHNMVIEGLIDAGELDKAEAFYESLEHKSRENDASMVKGF 542
Query: 298 -ILGLFDRMIESGIR-----PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFA 351
G D E IR PK + + ++ + +M +LG P++
Sbjct: 543 CAAGCLDHAFERFIRLEFPLPKSVYFTLFTSLCAEKDYISKAQDLLDRMWKLGVEPEKSM 602
Query: 352 YNALVDALIDKGMLDMARKYDEEMFAKGL 380
Y L+ A + AR++ E + K +
Sbjct: 603 YGKLIGAWCRVNNVRKAREFFEILVTKKI 631
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT 69
D KR +E F+ + ++T + Y + D+ + L MK +P+ T
Sbjct: 684 DMKREMEAFDVIPDVVYYTIMINRYCHLNDL-------KKVYALFKDMKRR-EIVPDVVT 735
Query: 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN-LVDALCEYKHVIEAQELCFGEN 128
+ ++ K +L E + F +K +V Y L+D C+ + EA+ +
Sbjct: 736 YTVLLKNKPERNLSRE-------MKAFDVKPDVFYYTVLIDWQCKIGDLGEAKRI----- 783
Query: 129 KNVGFSGLVEMN---KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMD 185
F ++E Y ++ KM + + + ++ M + GV D+ Y+ +
Sbjct: 784 ----FDQMIESGVDPDAAPYTALIACCCKMGYLKEAKMIFDRMIESGVKPDVVPYTALIA 839
Query: 186 IMCKSGKPWKAVKLYKEMKKKGIK 209
C++G KAVKL KEM +KGIK
Sbjct: 840 GCCRNGFVLKAVKLVKEMLEKGIK 863
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 168/372 (45%), Gaps = 19/372 (5%)
Query: 14 ALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIM 73
AL FF + F HT T+ +I L + D L+ +MK + F +
Sbjct: 59 ALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHC-SEDLFISV 117
Query: 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGF 133
Y L A+ F ++ EFG V N V ++ I+ + + + K GF
Sbjct: 118 ISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGF 177
Query: 134 SGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP 193
V YN++L+ K + ++ EM +G D SY+ + MC+ G
Sbjct: 178 EPNV-----FTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVG-- 230
Query: 194 WKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTV 253
VK +E+ ++ + V YN +I + A + REM E G P+V++ +T+
Sbjct: 231 --LVKEGRELAER-FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTL 287
Query: 254 IKLLCENGRVREAYAVLAEMPKKGCVPDVITYH-----CFFRCLEKPREILGLFDRMIES 308
I +LC +G++ A++ L +M K+GC P++ T CF R + L L+++MI
Sbjct: 288 INVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLR--GTTFDALDLWNQMIRG 345
Query: 309 -GIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDM 367
G++P + Y L++ F G + V+ MEE+GCSP+ Y +L++ +G LD
Sbjct: 346 FGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDG 405
Query: 368 ARKYDEEMFAKG 379
A +M G
Sbjct: 406 AVYIWNKMLTSG 417
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 170/370 (45%), Gaps = 20/370 (5%)
Query: 12 KRALEFFNWV-ETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATF 70
+RA+E F + E C + YN V+D L + + + MK + PN T+
Sbjct: 128 ERAVEMFYRIKEFGCD--PSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFE-PNVFTY 184
Query: 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCFGENK 129
++ K + V+ A ++ G D VSY ++ ++CE V E +EL
Sbjct: 185 NVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELA----- 239
Query: 130 NVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189
F +V +YN ++ G K + E EM ++G+ ++ SYS ++++C
Sbjct: 240 -ERFEPVVS-----VYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCN 293
Query: 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM-REMGCQPSVV 248
SG+ A +M K+G ++ +++++ + A+ ++ +M R G QP+VV
Sbjct: 294 SGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVV 353
Query: 249 TCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG---LFDRM 305
NT+++ C +G + +A +V + M + GC P++ TY K + G ++++M
Sbjct: 354 AYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKM 413
Query: 306 IESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGML 365
+ SG P + Y ++ R + + + M + C+P +NA + L D G L
Sbjct: 414 LTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRL 473
Query: 366 DMARKYDEEM 375
D A K +M
Sbjct: 474 DWAEKVFRQM 483
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 123/287 (42%), Gaps = 52/287 (18%)
Query: 102 VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK----TKIYNM--ILRGWFKM 155
+SY L++ LC + + FS L +M K IY + +++G F
Sbjct: 282 ISYSTLINVLCNSGQI------------ELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLR 329
Query: 156 SWWGKCREFWEEMDKR-GVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVA 214
+ W +M + G+ ++ +Y+ + C G KAV ++ M++ G ++
Sbjct: 330 GTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRT 389
Query: 215 YNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274
Y ++I +D A+ ++ +M GC P+VV +++ LC + + +EA +++ M
Sbjct: 390 YGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMS 449
Query: 275 KKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334
K+ C P V T++ F + GL D GR + VF
Sbjct: 450 KENCAPSVPTFNAFIK---------GLCDA--------------------GRLDWAEKVF 480
Query: 335 VVWKKMEELG-CSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
++ME+ C P+ YN L+D L ++ A E+F +G+
Sbjct: 481 ---RQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGV 524
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 9/236 (3%)
Query: 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222
E + + + G + Y+ +D + + +Y++MK+ G + +V YN +++A+
Sbjct: 132 EMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKAL 191
Query: 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV 282
+ VD A ++ EM GC P V+ TVI +CE G V+E LAE + P V
Sbjct: 192 CKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRE-LAERFE----PVV 246
Query: 283 ITYHCFFRCLEKPREILGLFD---RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKK 339
Y+ L K + G F+ M+E GI P + +Y L+ G + F +
Sbjct: 247 SVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306
Query: 340 MEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQG 395
M + GC P+ + ++LV +G A +M +G +P LVQG
Sbjct: 307 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMI-RGFGLQPNVVAYNTLVQG 361
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/406 (19%), Positives = 168/406 (41%), Gaps = 44/406 (10%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C +D+K A E + + + +Y+++I++L + +L+++ + +M P
Sbjct: 257 CKEHDYKGAFELMREM-VEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCH-P 314
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDE-FGLK-DEVSYCNLVDALCEYKHVIEAQEL 123
N T + K +A+ +N++ FGL+ + V+Y LV C + ++++A +
Sbjct: 315 NIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSV 374
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRG--------WFKMSWWGKC-------------- 161
F + +G S + + I RG W KM G C
Sbjct: 375 -FSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALC 433
Query: 162 --------REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG-IKMDV 212
E M K + +++ ++ +C +G+ A K++++M+++ ++
Sbjct: 434 RHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNI 493
Query: 213 VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE 272
V YN ++ + + ++ A + RE+ G + S T NT++ C G A ++ +
Sbjct: 494 VTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGK 553
Query: 273 MPKKGCVPDVITYHCFFR--CLEKPREILGLFDRMIESGI---RPKMDTYVMLLRKFGRW 327
M G PD IT + C + E ++ G RP + +Y ++ R
Sbjct: 554 MMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRS 613
Query: 328 GFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDE 373
++ ++M G P ++ L++ I + D+ R +D+
Sbjct: 614 NCREDGVILLERMISAGIVPSIATWSVLINCFI---LDDIVRAHDQ 656
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 169/371 (45%), Gaps = 18/371 (4%)
Query: 3 TLSCYANDW---KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLS--WNLIHRM 57
TLS N + KR + V+ + DT+ I G F S L+ +M
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQM 214
Query: 58 KDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKH 116
P+ T+ + ++ A+ K+++ ++ D V Y ++D LC+YKH
Sbjct: 215 VQRGCQ-PDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH 273
Query: 117 VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD 176
+ +A L F E N G V Y+ ++ W +M +R + +
Sbjct: 274 MDDALNL-FTEMDNKGIRPDV-----FTYSSLISCLCNYGRWSDASRLLSDMIERKINPN 327
Query: 177 LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYR 236
+ ++S +D K GK +A KLY EM K+ I D+ Y+++I + + +D A ++
Sbjct: 328 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 387
Query: 237 EMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY----HCFFRCL 292
M C P+VVT +T+IK C+ RV E + EM ++G V + +TY H FF+
Sbjct: 388 LMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 447
Query: 293 EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAY 352
+ + +F +M+ G+ P + TY +LL + G L VV++ ++ PD + Y
Sbjct: 448 DCDNAQM-VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 506
Query: 353 NALVDALIDKG 363
N +++ + G
Sbjct: 507 NIMIEGMCKAG 517
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 165/354 (46%), Gaps = 17/354 (4%)
Query: 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKL 93
+N ++ + K +F+L +L +M+ S + T+ I + ++ A+ K+
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGIS-HDLYTYSIFINCFCRRSQLSLALAVLAKM 144
Query: 94 DEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN---KTKIYNMIL 149
+ G + D V+ +L++ C K + +A L +VEM T + ++
Sbjct: 145 MKLGYEPDIVTLSSLLNGYCHSKRISDAVAL---------VDQMVEMGYKPDTFTFTTLI 195
Query: 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK 209
G F + + ++M +RG DL +Y ++ +CK G A+ L K+M+K I+
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255
Query: 210 MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAV 269
DVV YNT+I + + +D A+ ++ EM G +P V T +++I LC GR +A +
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 270 LAEMPKKGCVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYVMLLRKFGR 326
L++M ++ P+V+T+ K +++ L+D MI+ I P + TY L+ F
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 375
Query: 327 WGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
L +++ M C P+ Y+ L+ ++ + EM +GL
Sbjct: 376 HDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGL 429
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 175/383 (45%), Gaps = 34/383 (8%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY +V++ L K + DL+ +L+ +M+ + + + +++A+ F +
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIE-ADVVIYNTIIDGLCKYKHMDDALNLFTE 283
Query: 93 LDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGE-----NKNV-GFSGLV-------- 137
+D G++ +V +Y +L+ LC Y +A L N NV FS L+
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343
Query: 138 ---------EMNKTKI------YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
EM K I Y+ ++ G+ + + +E M + ++ +YS
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
+ CK+ + + ++L++EM ++G+ + V Y T+I + D A V+++M +G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG-- 300
P+++T N ++ LC+NG++ +A V + + PD+ TY+ + K ++
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523
Query: 301 -LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
LF + G+ P + Y ++ F R G + KKM+E G P+ YN L+ A
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRAR 583
Query: 360 IDKGMLDMARKYDEEMFAKGLSA 382
+ G + + + +EM + G +
Sbjct: 584 LRDGDREASAELIKEMRSCGFAG 606
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 3/221 (1%)
Query: 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222
+ + +M K + ++ + + K K + L ++M+ GI D+ Y+ I
Sbjct: 69 DLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCF 128
Query: 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV 282
+ A+ V +M ++G +P +VT ++++ C + R+ +A A++ +M + G PD
Sbjct: 129 CRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 188
Query: 283 ITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKK 339
T+ L K E + L D+M++ G +P + TY ++ + G + + KK
Sbjct: 189 FTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKK 248
Query: 340 MEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
ME+ D YN ++D L +D A EM KG+
Sbjct: 249 MEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGI 289
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 8/253 (3%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY+S+I+ D + ++ M + PN T+ + K + A V E M F +
Sbjct: 365 TYSSLINGFCMHDRLDEAKHMFELMI-SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
Query: 93 LDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151
+ + GL + V+Y L+ + + AQ + F + +VG V N YN++L G
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQ-MVFKQMVSVG----VHPN-ILTYNILLDG 477
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
K K +E + + + D+++Y+I ++ MCK+GK +L+ + KG+ +
Sbjct: 478 LCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPN 537
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
V+AYNT+I + A + ++M+E G P+ T NT+I+ +G + ++
Sbjct: 538 VIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIK 597
Query: 272 EMPKKGCVPDVIT 284
EM G D T
Sbjct: 598 EMRSCGFAGDAST 610
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
Query: 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255
AV L+ +M K +V +N ++ AV + + + +M+ +G + T + I
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126
Query: 256 LLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLEKP-REILGLFDRMIESGIRP 312
C ++ A AVLA+M K G PD++T C K + + L D+M+E G +P
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 313 KMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMA 368
T+ L+ + +M + GC PD Y +V+ L +G +D+A
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 3/155 (1%)
Query: 228 VDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHC 287
VD A+ ++ +M + PS+V N ++ + + + ++ +M G D+ TY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 288 FFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELG 344
F C + ++ L + +M++ G P + T LL + + + +M E+G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 345 CSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
PD F + L+ L A ++M +G
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 160/347 (46%), Gaps = 17/347 (4%)
Query: 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86
+ T T+N++I L + + LI RM P+ T+ ++ + A
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQ-PDLVTYGVVVNGLCKRGDTDLA 240
Query: 87 MGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145
NK+++ L+ V Y ++D LC+YKH+ +A L F E + G V Y
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL-FKEMETKGIRPNV-----VTY 294
Query: 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205
+ ++ W +M +R + D+ ++S +D K GK +A KLY EM K
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 206 KGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE 265
+ I +V Y+++I + + +D A +++ M C P VVT NT+IK C+ RV E
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 414
Query: 266 AYAVLAEMPKKGCVPDVITYHCFFRCL------EKPREILGLFDRMIESGIRPKMDTYVM 319
V EM ++G V + +TY+ + L + +EI F M+ G+ P + TY
Sbjct: 415 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI---FKEMVSDGVPPNIMTYNT 471
Query: 320 LLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLD 366
LL + G L VV++ ++ P + YN +++ + G ++
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 175/387 (45%), Gaps = 48/387 (12%)
Query: 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP-NHATFRIMFKRYVTAHLVNEAMGTFNK 92
++ ++ + K +FD+ +L +M++ IP NH T+ I+ + + A+ K
Sbjct: 84 FSKLLSAIAKMNKFDVVISLGEQMQN--LGIPHNHYTYSILINCFCRRSQLPLALAVLGK 141
Query: 93 LDEFGLKDE-VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151
+ + G + V+ +L++ C K + EA L + F + N T +N ++ G
Sbjct: 142 MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALV-----DQMFVTGYQPN-TVTFNTLIHG 195
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
F + + + M +G DL +Y + ++ +CK G A L +M++ ++
Sbjct: 196 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPG 255
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
V+ YNT+I + + +D A+ +++EM G +P+VVT +++I LC GR +A +L+
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315
Query: 272 EMPKKGCVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYV---------- 318
+M ++ PDV T+ K +++ L+D M++ I P + TY
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHD 375
Query: 319 -------------------------MLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYN 353
L++ F ++ + V+++M + G + YN
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 435
Query: 354 ALVDALIDKGMLDMARKYDEEMFAKGL 380
L+ L G DMA++ +EM + G+
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 179/383 (46%), Gaps = 34/383 (8%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY V++ L K + DL++NL+++M+ P + + +++A+ F +
Sbjct: 223 TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE-PGVLIYNTIIDGLCKYKHMDDALNLFKE 281
Query: 93 LDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGE-----NKNV-GFSGLV-------- 137
++ G++ + V+Y +L+ LC Y +A L N +V FS L+
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 138 ---------EMNKTKI------YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
EM K I Y+ ++ G+ + ++ +E M + D+ +Y+
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 401
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
+ CK + + +++++EM ++G+ + V YN +I+ + + D A +++EM G
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILG-- 300
P+++T NT++ LC+NG++ +A V + + P + TY+ + K ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521
Query: 301 -LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
LF + G++P + Y ++ F R G ++K+M+E G P+ YN L+ A
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581
Query: 360 IDKGMLDMARKYDEEMFAKGLSA 382
+ G + + + +EM + G +
Sbjct: 582 LRDGDREASAELIKEMRSCGFAG 604
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 174/371 (46%), Gaps = 18/371 (4%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C AL F +ET TY+S+I L + + + L+ M + + P
Sbjct: 267 CKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN-P 324
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE-VSYCNLVDALCEYKHVIEAQELC 124
+ TF + +V + EA ++++ + + V+Y +L++ C + + EA+++
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 125 -FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
F +K+ F +V YN +++G+ K + E + EM +RG+V + +Y+I
Sbjct: 385 EFMVSKHC-FPDVV------TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243
+ + ++G A +++KEM G+ +++ YNT++ + + ++ AM V+ ++
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLEKPR-EILG 300
+P++ T N +I+ +C+ G+V + + + + KG PDV+ Y+ C + + E
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADA 557
Query: 301 LFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDE----FAYNALV 356
LF M E G P Y L+R R G + K+M G + D N L
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLH 617
Query: 357 DALIDKGMLDM 367
D +DK LDM
Sbjct: 618 DGRLDKSFLDM 628
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 118/257 (45%), Gaps = 11/257 (4%)
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
Y++++ + + S +M K G ++ + S ++ C S + +AV L +M
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
G + + V +NT+I + + AM + M GCQP +VT V+ LC+ G
Sbjct: 179 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLL 321
A+ +L +M + P V+ Y+ L K + + L LF M GIRP + TY L+
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298
Query: 322 R---KFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378
+GRW + M E +PD F ++AL+DA + +G L A K +EM +
Sbjct: 299 SCLCNYGRWS---DASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355
Query: 379 GLSAKPREELGTKLVQG 395
S P + L+ G
Sbjct: 356 --SIDPSIVTYSSLING 370
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 38/223 (17%)
Query: 196 AVKLYKEMKK------------------KGIKMDVV-----------------AYNTVIR 220
AV L+ EM K K K DVV Y+ +I
Sbjct: 65 AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124
Query: 221 AVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP 280
+ A+ V +M ++G +P++VT ++++ C + R+ EA A++ +M G P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184
Query: 281 DVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVW 337
+ +T++ L K E + L DRM+ G +P + TY +++ + G F +
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 244
Query: 338 KKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
KME+ P YN ++D L +D A +EM KG+
Sbjct: 245 NKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGI 287
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 39/185 (21%)
Query: 223 GVSE-GVDFAMRVYREMREMGCQPSVV--------------------------------- 248
G+SE +D A+ ++ EM + PS++
Sbjct: 56 GLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHN 115
Query: 249 --TCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLEKP-REILGLFD 303
T + +I C ++ A AVL +M K G P+++T C K E + L D
Sbjct: 116 HYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVD 175
Query: 304 RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363
+M +G +P T+ L+ + +M GC PD Y +V+ L +G
Sbjct: 176 QMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235
Query: 364 MLDMA 368
D+A
Sbjct: 236 DTDLA 240
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 156/346 (45%), Gaps = 30/346 (8%)
Query: 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQE 122
+P+ TF + +NEA N++ G D+++Y L++ LC+ V A++
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKD 343
Query: 123 LCFGENK------NVGFSGLVEMNKTK--------------------IYNMILRGWFKMS 156
L + K N G V + YN ++ G++K
Sbjct: 344 LFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEG 403
Query: 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYN 216
G E +M +G +++SY+I +D CK GK +A + EM G+K + V +N
Sbjct: 404 LVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFN 463
Query: 217 TVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276
+I A + A+ ++REM GC+P V T N++I LCE ++ A +L +M +
Sbjct: 464 CLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE 523
Query: 277 GCVPDVITYHCFFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPV 333
G V + +TY+ + EI L + M+ G TY L++ R G +
Sbjct: 524 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583
Query: 334 FVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379
+++KM G +P + N L++ L GM++ A ++ +EM +G
Sbjct: 584 RSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 161/344 (46%), Gaps = 11/344 (3%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TYNS+I K L+ ++H M+ N PN ++ I+ + ++EA N+
Sbjct: 391 TYNSLIYGYWKEGLVGLALEVLHDMR-NKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNE 449
Query: 93 LDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151
+ GLK + V + L+ A C+ + EA E+ F E G V + I +
Sbjct: 450 MSADGLKPNTVGFNCLISAFCKEHRIPEAVEI-FREMPRKGCKPDVYTFNSLISGLCEVD 508
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
K + W +M GVV + +Y+ ++ + G+ +A KL EM +G +D
Sbjct: 509 EIKHALW-----LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLD 563
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
+ YN++I+ + + VD A ++ +M G PS ++CN +I LC +G V EA
Sbjct: 564 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQK 623
Query: 272 EMPKKGCVPDVITYHCFFRCLEKPREI---LGLFDRMIESGIRPKMDTYVMLLRKFGRWG 328
EM +G PD++T++ L + I L +F ++ GI P T+ L+ + G
Sbjct: 624 EMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGG 683
Query: 329 FLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYD 372
F+ ++ + E G P+ ++ L+ ++I + LD R Y+
Sbjct: 684 FVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRRFYN 727
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 154/402 (38%), Gaps = 75/402 (18%)
Query: 14 ALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIM 73
++E F+W + + H+ D Y +I LG EF L+ +MKD I+
Sbjct: 94 SMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEG----------IV 143
Query: 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGF 133
FK + ++ + D+ G + + L E ++V +
Sbjct: 144 FKESLFISIMRD-------YDKAGFPGQTTRLML-----EMRNVYSCEP----------- 180
Query: 134 SGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP 193
K YN++L + + +M R + L ++ + M C +
Sbjct: 181 -------TFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEI 233
Query: 194 WKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTV 253
A+ L ++M K G + V Y T+I ++ V+ A+++ EM MGC P T N V
Sbjct: 234 DSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDV 293
Query: 254 IKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEK--------------PREIL 299
I LC+ R+ EA ++ M +G PD ITY L K P+ +
Sbjct: 294 ILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI 353
Query: 300 GLFDRMIES---------------------GIRPKMDTYVMLLRKFGRWGFLRPVFVVWK 338
+F+ +I GI P + TY L+ + + G + V
Sbjct: 354 VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLH 413
Query: 339 KMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
M GC P+ ++Y LVD G +D A EM A GL
Sbjct: 414 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGL 455
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 16/359 (4%)
Query: 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGT 89
T +YN V++IL ++ N+ + M P TF ++ K + + ++ A+
Sbjct: 181 TFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIP-PTLFTFGVVMKAFCAVNEIDSALSL 239
Query: 90 FNKLDEFG-LKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148
+ + G + + V Y L+ +L + V EA +L + + G V +T +N +
Sbjct: 240 LRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLL----EEMFLMGCVPDAET--FNDV 293
Query: 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI 208
+ G K + + M RG D +Y M+ +CK G+ A L+ + K
Sbjct: 294 ILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP-- 351
Query: 209 KMDVVAYNTVIRAVGVSEGVDFAMRVYREM-REMGCQPSVVTCNTVIKLLCENGRVREAY 267
++V +NT+I +D A V +M G P V T N++I + G V A
Sbjct: 352 --EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLAL 409
Query: 268 AVLAEMPKKGCVPDVITYHCF---FRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKF 324
VL +M KGC P+V +Y F L K E + + M G++P + L+ F
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469
Query: 325 GRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAK 383
+ + ++++M GC PD + +N+L+ L + + A +M ++G+ A
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVAN 528
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 140/326 (42%), Gaps = 50/326 (15%)
Query: 100 DEVSYCNLVDALCE---YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMS 156
D+ ++ LV+ LC+ KH IE ++ E G+ V YN ++ G K+
Sbjct: 294 DQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE----GYDPDV-----YTYNSVISGLCKLG 344
Query: 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYN 216
+ E ++M R + +Y+ + +CK + +A +L + + KGI DV +N
Sbjct: 345 EVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 404
Query: 217 TVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276
++I+ + ++ AM ++ EMR GC+P T N +I LC G++ EA +L +M
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464
Query: 277 GCVPDVITYHCF---FRCLEKPREILGLF------------------------------- 302
GC VITY+ F K RE +F
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524
Query: 303 ----DRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDA 358
D+MI G +P TY LL F R G ++ + + M GC PD Y L+
Sbjct: 525 AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584
Query: 359 LIDKGMLDMARKYDEEMFAKGLSAKP 384
L G +++A K + KG++ P
Sbjct: 585 LCKAGRVEVASKLLRSIQMKGINLTP 610
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 112/444 (25%), Positives = 183/444 (41%), Gaps = 75/444 (16%)
Query: 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT 69
D AL FN +F+ Y ++ LG+ FD ++ MK + + +T
Sbjct: 62 DDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM-GTST 120
Query: 70 FRIMFKRYVTAHLVNEAMGTFN-KLDEFGLKDEVSYCN-----LVDA----LCEYKHV-- 117
F I+ + Y L +E + + +DEFGLK + + N LVD L E H
Sbjct: 121 FLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKM 180
Query: 118 -------------IEAQELCFGEN--------KNVGFSGLVEMNKTKIYNMILRGW---- 152
+ + LC +++ GLV KT + +++G+
Sbjct: 181 SVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKT--FTTVMQGYIEEG 238
Query: 153 --------------FKMSW---------WGKCRE--------FWEEM-DKRGVVKDLHSY 180
F SW G C+E F +EM ++ G D +++
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240
+ ++ +CK+G A+++ M ++G DV YN+VI + V A+ V +M
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 241 MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLEKPREI 298
C P+ VT NT+I LC+ +V EA + + KG +PDV T++ + CL + +
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418
Query: 299 -LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVD 357
+ LF+ M G P TY ML+ G L + K+ME GC+ YN L+D
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478
Query: 358 ALIDKGMLDMARKYDEEMFAKGLS 381
A + +EM G+S
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVS 502
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 176/395 (44%), Gaps = 37/395 (9%)
Query: 6 CYANDWKRALEFFNWVET-DCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSI 64
C + K A+E + + T DC + T TYN++I L K + + + L R+ + +
Sbjct: 341 CKLGEVKEAVEVLDQMITRDC--SPNTVTYNTLISTLCKENQVEEATELA-RVLTSKGIL 397
Query: 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQEL 123
P+ TF + + AM F ++ G + DE +Y L+D+LC + EA +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
Query: 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183
K + SG T YN ++ G+ K + + E ++EM+ GV ++ +Y+
Sbjct: 458 L----KQMELSGCARSVIT--YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511
Query: 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243
+D +CKS + A +L +M +G K D YN+++ + A + + M GC
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571
Query: 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPR---EILG 300
+P +VT T+I LC+ GRV A +L + KG Y+ + L + R E +
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAIN 631
Query: 301 LFDRMIESG-IRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
LF M+E P +Y ++ R G P A + LV+ L
Sbjct: 632 LFREMLEQNEAPPDAVSYRIVFRGLCNGG-----------------GPIREAVDFLVE-L 673
Query: 360 IDKGML-DMARKYDEEMFAKGLSAKPREELGTKLV 393
++KG + + + Y M A+GL EE KLV
Sbjct: 674 LEKGFVPEFSSLY---MLAEGLLTLSMEETLVKLV 705
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 152/368 (41%), Gaps = 23/368 (6%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP 65
C A K A+E + + + + TYNSVI L K E + ++ +M S P
Sbjct: 306 CKAGHVKHAIEIMDVMLQE-GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS-P 363
Query: 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCF 125
N T+ + + V EA L G+ +V C + +I Q LC
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV---------CTFNSLI--QGLCL 412
Query: 126 GENKNVGFSGLVEMNKTK------IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS 179
N V EM YNM++ + ++M+ G + + +
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472
Query: 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239
Y+ +D CK+ K +A +++ EM+ G+ + V YNT+I + S V+ A ++ +M
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532
Query: 240 EMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPR--E 297
G +P T N+++ C G +++A ++ M GC PD++TY L K E
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592
Query: 298 ILGLFDRMIE-SGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKM-EELGCSPDEFAYNAL 355
+ R I+ GI Y +++ R ++++M E+ PD +Y +
Sbjct: 593 VASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652
Query: 356 VDALIDKG 363
L + G
Sbjct: 653 FRGLCNGG 660
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 177/370 (47%), Gaps = 19/370 (5%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
T+N VI+ F+ L+ +++ +M P+ T + + + V++A+ +K
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYE-PDRVTIGSLVNGFCRRNRVSDAVSLVDK 180
Query: 93 LDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151
+ E G K D V+Y ++D+LC+ K V +A + F E + G V Y ++ G
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF-FKEIERKGIRPNVV-----TYTALVNG 234
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
S W +M K+ + ++ +YS +D K+GK +A +L++EM + I D
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
+V Y+++I + + + +D A +++ M GC VV+ NT+I C+ RV + +
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354
Query: 272 EMPKKGCVPDVITYHC----FFRC--LEKPREILGLFDRMIESGIRPKMDTYVMLLRKFG 325
EM ++G V + +TY+ FF+ ++K +E F +M GI P + TY +LL
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQE---FFSQMDFFGISPDIWTYNILLGGLC 411
Query: 326 RWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPR 385
G L V+++ M++ D Y ++ + G ++ A + KGL KP
Sbjct: 412 DNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGL--KPD 469
Query: 386 EELGTKLVQG 395
T ++ G
Sbjct: 470 IVTYTTMMSG 479
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 138/276 (50%), Gaps = 15/276 (5%)
Query: 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDIL---GKFFEFDLSWNLIHRMKDNPS 62
C ++ W A + + T TY++++D GK E + + RM +P
Sbjct: 236 CNSSRWSDAARLLSDMIKK-KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294
Query: 63 SIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG-LKDEVSYCNLVDALCEYKHVIEAQ 121
+ T+ + ++EA F+ + G L D VSY L++ C+ K V +
Sbjct: 295 IV----TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350
Query: 122 ELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYS 181
+L F E G ++ T YN +++G+F+ K +EF+ +MD G+ D+ +Y+
Sbjct: 351 KL-FREMSQRGL-----VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 182 IYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241
I + +C +G+ KA+ ++++M+K+ + +D+V Y TVIR + + V+ A ++ +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG 277
G +P +VT T++ LC G + E A+ +M ++G
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 3/241 (1%)
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
+N +L K+ + ++M+ G+ DL++++I ++ C + A+ + +M
Sbjct: 88 FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
K G + D V +++ V A+ + +M E+G +P +V N +I LC+ RV
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVN 207
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLL 321
+A+ E+ +KG P+V+TY L + + L MI+ I P + TY LL
Sbjct: 208 DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALL 267
Query: 322 RKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381
F + G + ++++M + PD Y++L++ L +D A + + M +KG
Sbjct: 268 DAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCL 327
Query: 382 A 382
A
Sbjct: 328 A 328
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 11/239 (4%)
Query: 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222
+ + +M K + ++ + + K K + L K+M+ GI+ D+ +N VI
Sbjct: 71 DLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCF 130
Query: 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV 282
V A+ + +M ++G +P VT +++ C RV +A +++ +M + G PD+
Sbjct: 131 CCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDI 190
Query: 283 ITYHCFFRCLEKPREILGLFDRMIE---SGIRPKMDTYVMLLRKF---GRWGFLRPVFVV 336
+ Y+ L K + + FD E GIRP + TY L+ RW +
Sbjct: 191 VAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS---DAARL 247
Query: 337 WKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQG 395
M + +P+ Y+AL+DA + G + A++ EEM +S P + L+ G
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR--MSIDPDIVTYSSLING 304
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 166/371 (44%), Gaps = 18/371 (4%)
Query: 3 TLSCYANDW---KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLS--WNLIHRM 57
TLS N + KR + V+ + DT I G F S L+ RM
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
Query: 58 KDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKH 116
PN T+ ++ ++ A NK++ ++ + V Y ++D+LC+Y+H
Sbjct: 217 VQRGCQ-PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRH 275
Query: 117 VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD 176
+A L F E +N G V Y+ ++ W +M +R + +
Sbjct: 276 EDDALNL-FTEMENKGVRPNV-----ITYSSLISCLCNYERWSDASRLLSDMIERKINPN 329
Query: 177 LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYR 236
+ +++ +D K GK +A KLY EM K+ I D+ Y+++I + + +D A ++
Sbjct: 330 VVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389
Query: 237 EMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY----HCFFRCL 292
M C P+VVT NT+I C+ R+ E + EM ++G V + +TY H FF+
Sbjct: 390 LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQAR 449
Query: 293 EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAY 352
+ + +F +M+ G+ P + TY LL + G L VV++ ++ P + Y
Sbjct: 450 DCDNAQM-VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 508
Query: 353 NALVDALIDKG 363
N +++ + G
Sbjct: 509 NIMIEGMCKAG 519
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 164/354 (46%), Gaps = 17/354 (4%)
Query: 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKL 93
+N ++ + K +FDL +L +M+ S N T+ I+ + ++ A+ K+
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGIS-HNLYTYNILINCFCRRSQISLALALLGKM 146
Query: 94 DEFGLKDE-VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN---KTKIYNMIL 149
+ G + V+ +L++ C K + +A L +VEM T + ++
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVAL---------VDQMVEMGYRPDTITFTTLI 197
Query: 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK 209
G F + + + M +RG +L +Y + ++ +CK G A L +M+ I+
Sbjct: 198 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 257
Query: 210 MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAV 269
+VV Y+TVI ++ D A+ ++ EM G +P+V+T +++I LC R +A +
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRL 317
Query: 270 LAEMPKKGCVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYVMLLRKFGR 326
L++M ++ P+V+T++ K +++ L+D MI+ I P + TY L+ F
Sbjct: 318 LSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 377
Query: 327 WGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
L +++ M C P+ YN L++ +D + EM +GL
Sbjct: 378 HDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGL 431
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 3/239 (1%)
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
Y ILR + M K + + ++ + + K K + L ++M+
Sbjct: 53 YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
+ GI ++ YN +I + A+ + +M ++G +PS+VT ++++ C R+
Sbjct: 113 RLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172
Query: 265 EAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLL 321
+A A++ +M + G PD IT+ L K E + L DRM++ G +P + TY +++
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232
Query: 322 RKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380
+ G + F + KME + Y+ ++D+L D A EM KG+
Sbjct: 233 NGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGV 291
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 136/288 (47%), Gaps = 11/288 (3%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY+S+I L + + + L+ M + + PN TF + +V + EA +++
Sbjct: 297 TYSSLISCLCNYERWSDASRLLSDMIERKIN-PNVVTFNALIDAFVKEGKLVEAEKLYDE 355
Query: 93 LDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151
+ + + ++ +Y +L++ C + + EA+ + F +V YN ++ G
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT------YNTLING 409
Query: 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211
+ K + E + EM +RG+V + +Y+ + ++ A ++K+M G+ +
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPN 469
Query: 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA 271
++ YNT++ + + ++ AM V+ ++ +P++ T N +I+ +C+ G+V + + +
Sbjct: 470 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 529
Query: 272 EMPKKGCVPDVITYHCFFRCLEK---PREILGLFDRMIESGIRPKMDT 316
+ KG PDVI Y+ + E LF +M E G P T
Sbjct: 530 SLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 100/233 (42%), Gaps = 18/233 (7%)
Query: 155 MSWWGKCREFWE-EMDKRGVVKD-LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV 212
M +WG R F D R ++++ LHS K A+ L+ M K +
Sbjct: 39 MCYWG--RAFSSGSGDYREILRNGLHSM-----------KLDDAIGLFGGMVKSRPLPSI 85
Query: 213 VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE 272
+N ++ A+ + D + + +M+ +G ++ T N +I C ++ A A+L +
Sbjct: 86 FEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGK 145
Query: 273 MPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGF 329
M K G P ++T ++ + + L D+M+E G RP T+ L+
Sbjct: 146 MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 205
Query: 330 LRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSA 382
+ +M + GC P+ Y +V+ L +G +D+A +M A + A
Sbjct: 206 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEA 258
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 12/283 (4%)
Query: 86 AMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144
A+ NK+++ ++ D V Y ++D+LC+Y+HV +A L F E N G V
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNL-FTEMDNKGIRPDVF-----T 277
Query: 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204
Y+ ++ W +M +R + ++ +++ +D K GK +A KL+ EM
Sbjct: 278 YSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 337
Query: 205 KKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264
++ I ++V YN++I + + +D A +++ M C P VVT NT+I C+ +V
Sbjct: 338 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVV 397
Query: 265 EAYAVLAEMPKKGCVPDVITY----HCFFRCLEKPREILGLFDRMIESGIRPKMDTYVML 320
+ + +M ++G V + +TY H FF+ + + +F +M+ G+ P + TY L
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQM-VFKQMVSDGVHPNIMTYNTL 456
Query: 321 LRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363
L + G L VV++ +++ PD + YN + + + G
Sbjct: 457 LDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 170/364 (46%), Gaps = 34/364 (9%)
Query: 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92
TY +VI+ L K E DL+ NL+++M+ + + + V++A+ F +
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIE-ADVVIYSTVIDSLCKYRHVDDALNLFTE 265
Query: 93 LDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGE-----NKNV-GFSGLV-------- 137
+D G++ +V +Y +L+ LC Y +A L N NV F+ L+
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 138 ---------EMNKTKI------YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182
EM + I YN ++ G+ + ++ + M + + D+ +Y+
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 385
Query: 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242
++ CK+ K ++L+++M ++G+ + V Y T+I + D A V+++M G
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445
Query: 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREIL--- 299
P+++T NT++ LC+NG++ +A V + K PD+ TY+ + K ++
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGW 505
Query: 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359
LF + G++P + Y ++ F + G + ++ KM+E G PD YN L+ A
Sbjct: 506 DLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAH 565
Query: 360 IDKG 363
+ G
Sbjct: 566 LRDG 569
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 153/332 (46%), Gaps = 17/332 (5%)
Query: 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKL 93
++ ++ + K +FDL + +M+ S N T+ IM ++ A+ K+
Sbjct: 68 FSKLLSAIAKMKKFDLVISFGEKMEILGVS-HNLYTYNIMINCLCRRSQLSFALAILGKM 126
Query: 94 DEFGLKDEVSYCN-LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN---KTKIYNMIL 149
+ G + N L++ C + EA L +VEM T + ++
Sbjct: 127 MKLGYGPSIVTLNSLLNGFCHGNRISEAVAL---------VDQMVEMGYQPDTVTFTTLV 177
Query: 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK 209
G F+ + + E M +G DL +Y ++ +CK G+P A+ L +M+K I+
Sbjct: 178 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 237
Query: 210 MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAV 269
DVV Y+TVI ++ VD A+ ++ EM G +P V T +++I LC GR +A +
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 270 LAEMPKKGCVPDVITYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYVMLLRKFGR 326
L++M ++ P+V+T++ K +++ LFD MI+ I P + TY L+ F
Sbjct: 298 LSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCM 357
Query: 327 WGFLRPVFVVWKKMEELGCSPDEFAYNALVDA 358
L ++ M C PD YN L++
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLING 389
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 11/267 (4%)
Query: 119 EAQELCFGEN-KNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL 177
EA +L FGE K+ F +VE +K +L KM + F E+M+ GV +L
Sbjct: 48 EAVDL-FGEMVKSRPFPSIVEFSK------LLSAIAKMKKFDLVISFGEKMEILGVSHNL 100
Query: 178 HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYRE 237
++Y+I ++ +C+ + A+ + +M K G +V N+++ + A+ + +
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160
Query: 238 MREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEK--- 294
M EMG QP VT T++ L ++ + EA A++ M KGC PD++TY L K
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 295 PREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNA 354
P L L ++M + I + Y ++ ++ + ++ +M+ G PD F Y++
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280
Query: 355 LVDALIDKGMLDMARKYDEEMFAKGLS 381
L+ L + G A + +M + ++
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKIN 307
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 51/293 (17%)
Query: 33 TYNSVIDIL---GKFFEFDLSWN-LIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMG 88
T+NS+ID GK E + ++ +I R D PN T+ + + ++EA
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSID-----PNIVTYNSLINGFCMHDRLDEAQQ 366
Query: 89 TFNKL-DEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNM 147
F + + L D V+Y L++ C+ K V++ EL +++ GLV T Y
Sbjct: 367 IFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF----RDMSRRGLV--GNTVTYTT 420
Query: 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK-- 205
++ G+F+ S + +++M GV ++ +Y+ +D +CK+GK KA+ +++ ++K
Sbjct: 421 LIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK 480
Query: 206 ---------------------------------KGIKMDVVAYNTVIRAVGVSEGVDFAM 232
KG+K DV+AYNT+I + A
Sbjct: 481 MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAY 540
Query: 233 RVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY 285
++ +M+E G P T NT+I+ +G + ++ EM D TY
Sbjct: 541 TLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY 593
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 7/205 (3%)
Query: 171 RGVVKDLHSYSIYMDIMCKSG----KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSE 226
RG+ SY Y + + ++ K +AV L+ EM K +V ++ ++ A+ +
Sbjct: 20 RGIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMK 79
Query: 227 GVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYH 286
D + +M +G ++ T N +I LC ++ A A+L +M K G P ++T +
Sbjct: 80 KFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLN 139
Query: 287 CFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343
+ E + L D+M+E G +P T+ L+ + + ++M
Sbjct: 140 SLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK 199
Query: 344 GCSPDEFAYNALVDALIDKGMLDMA 368
GC PD Y A+++ L +G D+A
Sbjct: 200 GCQPDLVTYGAVINGLCKRGEPDLA 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,857,354
Number of Sequences: 539616
Number of extensions: 6738784
Number of successful extensions: 27003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 20246
Number of HSP's gapped (non-prelim): 2629
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)