Query 041804
Match_columns 403
No_of_seqs 577 out of 1594
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 10:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.3E-61 2.9E-66 456.3 47.7 381 5-391 447-854 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.5E-61 5.4E-66 454.5 47.6 372 7-390 418-795 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.6E-55 3.5E-60 412.3 36.9 370 5-389 97-499 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.5E-54 3.2E-59 405.8 37.9 347 27-387 83-465 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 6.4E-54 1.4E-58 410.7 39.7 368 5-388 162-629 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.6E-53 5.5E-58 406.6 37.6 359 6-388 233-661 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-25 2.4E-30 220.5 41.8 374 3-395 507-884 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-25 1.4E-29 215.1 44.1 356 5-378 441-799 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.4E-23 5.3E-28 183.7 34.9 303 39-387 43-356 (389)
10 PRK11788 tetratricopeptide rep 99.9 8.6E-23 1.9E-27 180.3 30.7 300 4-315 44-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 5.6E-20 1.2E-24 170.2 40.1 323 38-377 49-380 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-19 2.8E-24 168.2 42.2 361 3-378 135-571 (615)
13 PRK15174 Vi polysaccharide exp 99.9 2.4E-19 5.1E-24 166.1 41.0 320 6-343 53-381 (656)
14 PRK11447 cellulose synthase su 99.9 2.3E-19 5E-24 177.2 41.4 357 4-378 278-700 (1157)
15 PRK11447 cellulose synthase su 99.9 5.4E-19 1.2E-23 174.6 40.7 364 2-383 310-746 (1157)
16 KOG4626 O-linked N-acetylgluco 99.9 6.3E-20 1.4E-24 156.7 26.8 360 3-386 124-491 (966)
17 PRK10049 pgaA outer membrane p 99.9 6.2E-18 1.3E-22 160.0 42.6 370 4-390 24-466 (765)
18 PRK14574 hmsH outer membrane p 99.9 1.4E-16 3.1E-21 148.4 42.7 172 3-189 42-215 (822)
19 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-16 3.5E-21 147.8 42.6 339 33-379 129-538 (615)
20 PRK10049 pgaA outer membrane p 99.8 1E-15 2.3E-20 145.0 42.4 342 28-384 12-426 (765)
21 KOG4626 O-linked N-acetylgluco 99.8 3.1E-17 6.8E-22 140.4 27.0 328 30-377 115-450 (966)
22 KOG4422 Uncharacterized conser 99.8 1.4E-14 3E-19 119.1 33.2 274 8-292 128-443 (625)
23 PRK10747 putative protoheme IX 99.8 1.5E-14 3.2E-19 126.8 32.4 283 80-377 97-389 (398)
24 TIGR00540 hemY_coli hemY prote 99.8 1.4E-14 3.1E-19 127.5 32.4 296 70-377 85-398 (409)
25 PF13429 TPR_15: Tetratricopep 99.7 1.8E-17 4E-22 138.8 12.2 258 4-273 17-274 (280)
26 PRK14574 hmsH outer membrane p 99.7 1.1E-13 2.5E-18 129.3 38.0 362 3-378 110-513 (822)
27 PRK09782 bacteriophage N4 rece 99.7 5.2E-13 1.1E-17 127.5 41.7 356 4-378 322-706 (987)
28 PRK09782 bacteriophage N4 rece 99.7 5.5E-13 1.2E-17 127.3 41.1 351 9-379 356-741 (987)
29 PRK10747 putative protoheme IX 99.7 5.5E-14 1.2E-18 123.2 31.0 255 5-276 94-357 (398)
30 KOG2076 RNA polymerase III tra 99.7 2.9E-13 6.2E-18 121.3 35.3 365 6-378 150-555 (895)
31 PF13429 TPR_15: Tetratricopep 99.7 7.9E-17 1.7E-21 135.0 12.6 257 74-375 15-274 (280)
32 COG2956 Predicted N-acetylgluc 99.7 5.7E-14 1.2E-18 111.4 27.2 222 45-276 49-278 (389)
33 KOG2076 RNA polymerase III tra 99.7 2.2E-13 4.8E-18 122.0 33.9 332 34-376 142-510 (895)
34 TIGR00540 hemY_coli hemY prote 99.7 1.5E-13 3.2E-18 121.2 30.6 49 293-341 349-397 (409)
35 KOG2002 TPR-containing nuclear 99.7 1.1E-13 2.5E-18 124.7 29.6 362 4-378 279-709 (1018)
36 KOG4422 Uncharacterized conser 99.7 1.2E-12 2.5E-17 108.1 31.5 303 30-344 115-463 (625)
37 COG3071 HemY Uncharacterized e 99.7 1.4E-12 3E-17 106.7 31.8 297 73-383 88-395 (400)
38 COG2956 Predicted N-acetylgluc 99.7 3.3E-13 7.1E-18 107.2 27.2 298 79-385 47-354 (389)
39 KOG1915 Cell cycle control pro 99.7 9.2E-12 2E-16 104.1 36.9 355 8-379 154-537 (677)
40 KOG2003 TPR repeat-containing 99.7 1.2E-12 2.5E-17 109.0 31.1 205 154-365 502-710 (840)
41 KOG1126 DNA-binding cell divis 99.7 2.5E-14 5.5E-19 124.0 22.1 288 9-313 333-625 (638)
42 KOG2002 TPR-containing nuclear 99.6 5.2E-12 1.1E-16 114.3 33.0 363 7-378 319-745 (1018)
43 KOG1155 Anaphase-promoting com 99.6 4.5E-12 9.7E-17 105.6 28.8 246 45-306 241-493 (559)
44 KOG1126 DNA-binding cell divis 99.6 6.4E-13 1.4E-17 115.4 24.6 280 46-342 334-619 (638)
45 KOG0495 HAT repeat protein [RN 99.6 1.3E-10 2.8E-15 101.2 36.0 353 7-378 528-880 (913)
46 KOG2003 TPR repeat-containing 99.6 9.7E-12 2.1E-16 103.6 27.9 378 2-395 244-705 (840)
47 TIGR02521 type_IV_pilW type IV 99.6 2.8E-12 6E-17 104.9 25.2 198 68-274 32-230 (234)
48 KOG0495 HAT repeat protein [RN 99.6 2.7E-10 5.8E-15 99.3 37.1 354 9-379 420-847 (913)
49 PRK12370 invasion protein regu 99.6 8.4E-12 1.8E-16 114.3 29.0 248 82-343 276-535 (553)
50 COG3071 HemY Uncharacterized e 99.6 6E-11 1.3E-15 97.3 30.5 297 4-343 93-390 (400)
51 KOG0547 Translocase of outer m 99.6 7.1E-11 1.5E-15 99.3 30.3 360 5-377 125-565 (606)
52 KOG1155 Anaphase-promoting com 99.6 1.1E-11 2.4E-16 103.3 25.3 252 9-275 241-494 (559)
53 PRK12370 invasion protein regu 99.5 7.3E-12 1.6E-16 114.7 26.7 248 48-309 278-536 (553)
54 KOG1129 TPR repeat-containing 99.5 1.1E-12 2.4E-17 104.4 17.8 230 35-276 227-458 (478)
55 TIGR02521 type_IV_pilW type IV 99.5 1.6E-11 3.5E-16 100.4 25.1 203 30-241 30-232 (234)
56 COG3063 PilF Tfp pilus assembl 99.5 1.8E-10 4E-15 87.6 23.5 201 32-241 36-236 (250)
57 PF12569 NARP1: NMDA receptor- 99.4 9.3E-10 2E-14 97.8 30.6 313 33-365 6-355 (517)
58 PF13041 PPR_2: PPR repeat fam 99.4 4.1E-13 8.9E-18 79.4 6.4 49 175-223 1-49 (50)
59 PF12569 NARP1: NMDA receptor- 99.4 2.2E-09 4.9E-14 95.4 32.2 264 4-274 13-332 (517)
60 PF13041 PPR_2: PPR repeat fam 99.4 3.8E-13 8.1E-18 79.5 5.9 50 312-361 1-50 (50)
61 KOG1915 Cell cycle control pro 99.4 2.7E-08 5.9E-13 83.9 35.2 355 7-380 85-502 (677)
62 KOG4318 Bicoid mRNA stability 99.4 5.2E-11 1.1E-15 106.9 20.3 253 17-292 12-281 (1088)
63 KOG1173 Anaphase-promoting com 99.4 2.6E-10 5.6E-15 97.7 23.0 269 7-290 256-530 (611)
64 KOG4340 Uncharacterized conser 99.4 1.7E-09 3.7E-14 85.5 25.1 326 33-375 12-372 (459)
65 KOG1156 N-terminal acetyltrans 99.4 1.7E-08 3.6E-13 88.3 33.1 229 9-252 21-257 (700)
66 KOG1129 TPR repeat-containing 99.4 3.3E-10 7.2E-15 90.6 20.2 226 104-341 226-456 (478)
67 PRK11189 lipoprotein NlpI; Pro 99.4 1.3E-09 2.8E-14 91.7 25.1 120 45-171 40-161 (296)
68 KOG1173 Anaphase-promoting com 99.3 4.9E-09 1.1E-13 90.1 26.7 278 69-359 246-532 (611)
69 KOG2047 mRNA splicing factor [ 99.3 1.3E-07 2.9E-12 82.8 35.2 344 32-383 103-583 (835)
70 KOG1840 Kinesin light chain [C 99.3 1.4E-08 3.1E-13 89.4 29.5 253 100-377 198-478 (508)
71 KOG4318 Bicoid mRNA stability 99.3 4.2E-10 9.2E-15 101.3 20.0 269 52-364 11-286 (1088)
72 KOG1840 Kinesin light chain [C 99.3 2.3E-09 4.9E-14 94.3 24.0 244 31-274 199-477 (508)
73 COG3063 PilF Tfp pilus assembl 99.3 8.8E-09 1.9E-13 78.6 23.0 206 69-285 37-243 (250)
74 PRK11189 lipoprotein NlpI; Pro 99.3 5.9E-09 1.3E-13 87.7 24.6 218 9-241 40-265 (296)
75 cd05804 StaR_like StaR_like; a 99.3 9.6E-08 2.1E-12 83.5 33.1 202 31-240 6-214 (355)
76 cd05804 StaR_like StaR_like; a 99.2 1.4E-07 3E-12 82.5 32.5 300 67-378 6-336 (355)
77 KOG0547 Translocase of outer m 99.2 4.4E-09 9.5E-14 88.8 21.2 223 40-274 335-564 (606)
78 KOG1174 Anaphase-promoting com 99.2 2.1E-07 4.5E-12 77.4 30.1 299 65-378 192-500 (564)
79 KOG1156 N-terminal acetyltrans 99.2 5.4E-07 1.2E-11 79.1 33.5 203 3-217 49-257 (700)
80 KOG1174 Anaphase-promoting com 99.2 6E-08 1.3E-12 80.4 25.8 287 44-344 209-501 (564)
81 KOG2376 Signal recognition par 99.2 6.8E-07 1.5E-11 77.7 32.1 358 6-374 23-516 (652)
82 KOG4162 Predicted calmodulin-b 99.2 1E-06 2.2E-11 79.0 33.4 359 7-378 335-783 (799)
83 KOG3785 Uncharacterized conser 99.2 6.7E-07 1.4E-11 73.0 28.8 179 8-206 35-214 (557)
84 KOG2047 mRNA splicing factor [ 99.1 3.2E-06 7E-11 74.4 33.5 212 178-391 388-627 (835)
85 PF04733 Coatomer_E: Coatomer 99.1 3.3E-08 7.2E-13 82.0 19.3 245 8-276 14-265 (290)
86 KOG3785 Uncharacterized conser 99.1 5.1E-07 1.1E-11 73.6 24.9 364 5-385 67-495 (557)
87 PLN02789 farnesyltranstransfer 99.1 4.2E-07 9.2E-12 76.5 25.5 216 32-259 38-267 (320)
88 PF04733 Coatomer_E: Coatomer 99.1 1.8E-08 3.8E-13 83.6 17.0 246 111-378 11-265 (290)
89 KOG0548 Molecular co-chaperone 99.1 4.8E-06 1E-10 71.9 31.1 361 4-379 11-456 (539)
90 KOG0624 dsRNA-activated protei 99.0 5.8E-06 1.3E-10 67.4 27.6 208 29-241 36-252 (504)
91 PRK04841 transcriptional regul 99.0 4.6E-06 1E-10 82.5 33.1 337 38-378 381-760 (903)
92 KOG1125 TPR repeat-containing 99.0 3.4E-08 7.4E-13 85.3 15.6 230 38-274 292-525 (579)
93 PLN02789 farnesyltranstransfer 99.0 3.3E-07 7.3E-12 77.1 21.3 209 3-224 45-267 (320)
94 KOG4340 Uncharacterized conser 99.0 9.7E-07 2.1E-11 70.4 21.9 287 70-373 13-334 (459)
95 KOG1070 rRNA processing protei 98.9 1.2E-06 2.6E-11 83.6 25.7 227 139-371 1455-1693(1710)
96 KOG0624 dsRNA-activated protei 98.9 8.8E-06 1.9E-10 66.4 26.9 286 6-308 49-370 (504)
97 KOG4162 Predicted calmodulin-b 98.9 2.9E-05 6.2E-10 70.1 32.6 212 25-241 317-542 (799)
98 KOG1125 TPR repeat-containing 98.9 1.2E-07 2.7E-12 82.0 17.5 255 3-269 293-564 (579)
99 TIGR03302 OM_YfiO outer membra 98.9 2.8E-07 6.2E-12 75.3 18.7 188 29-241 31-232 (235)
100 COG5010 TadD Flp pilus assembl 98.9 4.6E-07 9.9E-12 71.0 18.5 158 71-237 70-227 (257)
101 KOG1128 Uncharacterized conser 98.9 1.8E-07 3.8E-12 83.3 17.8 222 27-275 394-615 (777)
102 KOG0548 Molecular co-chaperone 98.9 1.2E-05 2.7E-10 69.4 28.2 328 38-378 9-421 (539)
103 PRK14720 transcript cleavage f 98.9 4.5E-06 9.8E-11 78.6 27.4 260 64-383 28-289 (906)
104 TIGR03302 OM_YfiO outer membra 98.9 5.6E-07 1.2E-11 73.6 19.5 189 64-276 30-232 (235)
105 PF12854 PPR_1: PPR repeat 98.9 3.2E-09 7E-14 56.2 4.0 32 344-375 2-33 (34)
106 PRK10370 formate-dependent nit 98.9 3.9E-07 8.5E-12 71.5 17.0 156 38-215 23-181 (198)
107 COG5010 TadD Flp pilus assembl 98.9 1.3E-07 2.8E-12 74.0 13.7 166 30-206 66-231 (257)
108 PF12854 PPR_1: PPR repeat 98.9 5.5E-09 1.2E-13 55.3 4.3 32 242-273 2-33 (34)
109 PRK04841 transcriptional regul 98.8 3.4E-05 7.4E-10 76.4 33.0 334 8-343 387-760 (903)
110 KOG1070 rRNA processing protei 98.8 2.9E-06 6.3E-11 81.0 22.4 249 10-270 1440-1694(1710)
111 KOG3617 WD40 and TPR repeat-co 98.8 5E-05 1.1E-09 69.2 28.8 325 4-376 737-1107(1416)
112 KOG3081 Vesicle coat complex C 98.8 4.7E-05 1E-09 60.0 24.4 88 150-241 145-236 (299)
113 KOG2053 Mitochondrial inherita 98.7 0.00019 4.1E-09 66.2 34.4 181 8-200 22-213 (932)
114 PRK15359 type III secretion sy 98.7 9.2E-07 2E-11 65.6 14.6 92 36-129 29-120 (144)
115 PRK10370 formate-dependent nit 98.7 6.8E-07 1.5E-11 70.1 14.4 127 44-180 52-181 (198)
116 KOG3060 Uncharacterized conser 98.7 1.2E-05 2.7E-10 62.7 20.2 85 79-170 98-182 (289)
117 PRK15179 Vi polysaccharide bio 98.7 4.5E-06 9.8E-11 77.7 21.3 135 64-206 83-217 (694)
118 KOG1128 Uncharacterized conser 98.7 7.8E-07 1.7E-11 79.3 15.3 226 5-258 408-634 (777)
119 COG4783 Putative Zn-dependent 98.7 0.00014 3E-09 62.6 27.0 113 112-233 317-429 (484)
120 PRK15359 type III secretion sy 98.7 1.1E-06 2.4E-11 65.2 13.3 106 3-112 32-137 (144)
121 KOG2376 Signal recognition par 98.7 0.00023 4.9E-09 62.6 35.2 197 34-243 15-255 (652)
122 KOG1127 TPR repeat-containing 98.7 1.4E-05 3E-10 74.1 22.1 154 6-168 503-656 (1238)
123 PRK15179 Vi polysaccharide bio 98.7 2.8E-05 6E-10 72.6 24.7 200 30-252 27-227 (694)
124 KOG3081 Vesicle coat complex C 98.7 4.9E-05 1.1E-09 60.0 22.0 233 75-329 16-256 (299)
125 TIGR02552 LcrH_SycD type III s 98.6 2.4E-06 5.2E-11 63.0 13.6 94 70-170 20-113 (135)
126 COG4783 Putative Zn-dependent 98.6 7.6E-05 1.6E-09 64.1 23.5 146 70-241 309-454 (484)
127 PRK14720 transcript cleavage f 98.6 5.6E-05 1.2E-09 71.5 24.1 218 28-276 28-252 (906)
128 TIGR02552 LcrH_SycD type III s 98.6 4.7E-06 1E-10 61.5 13.9 97 31-129 17-113 (135)
129 KOG0985 Vesicle coat protein c 98.5 0.00033 7.2E-09 65.6 27.5 125 250-374 609-749 (1666)
130 KOG1914 mRNA cleavage and poly 98.5 0.00048 1E-08 60.1 33.3 129 248-377 367-500 (656)
131 KOG0985 Vesicle coat protein c 98.5 0.00057 1.2E-08 64.1 28.4 219 29-271 982-1218(1666)
132 KOG1127 TPR repeat-containing 98.5 9.2E-05 2E-09 69.0 23.3 182 46-239 473-657 (1238)
133 KOG3617 WD40 and TPR repeat-co 98.5 0.00077 1.7E-08 61.9 28.0 191 8-237 925-1170(1416)
134 KOG3060 Uncharacterized conser 98.5 0.0002 4.4E-09 56.2 21.2 188 45-241 26-220 (289)
135 KOG1914 mRNA cleavage and poly 98.5 0.00071 1.5E-08 59.1 30.7 172 193-365 347-526 (656)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 7.6E-06 1.6E-10 70.5 14.7 126 33-170 171-296 (395)
137 KOG3616 Selective LIM binding 98.5 0.0004 8.8E-09 62.9 25.3 79 185-274 740-818 (1636)
138 PF09976 TPR_21: Tetratricopep 98.4 2.9E-05 6.2E-10 57.9 15.4 126 31-168 12-144 (145)
139 TIGR00756 PPR pentatricopeptid 98.4 5.9E-07 1.3E-11 48.4 4.5 33 351-383 2-34 (35)
140 PF13812 PPR_3: Pentatricopept 98.4 7.6E-07 1.7E-11 47.5 4.5 33 350-382 2-34 (34)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.2E-05 4.7E-10 67.8 14.3 127 100-239 168-295 (395)
142 KOG3616 Selective LIM binding 98.3 0.0002 4.4E-09 64.7 20.2 75 150-235 740-814 (1636)
143 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3E-11 46.9 4.2 33 179-211 2-34 (35)
144 PF13812 PPR_3: Pentatricopept 98.3 1.2E-06 2.7E-11 46.7 3.9 33 248-280 2-34 (34)
145 PF09976 TPR_21: Tetratricopep 98.2 0.00014 3E-09 54.2 15.1 128 143-273 13-144 (145)
146 PF08579 RPM2: Mitochondrial r 98.2 5.5E-05 1.2E-09 51.3 10.4 77 183-259 31-116 (120)
147 PF10037 MRP-S27: Mitochondria 98.2 7.2E-05 1.6E-09 64.9 14.0 122 100-225 65-186 (429)
148 PRK02603 photosystem I assembl 98.2 0.00015 3.3E-09 55.8 14.5 93 30-122 34-127 (172)
149 PRK10866 outer membrane biogen 98.1 0.0018 3.8E-08 52.8 20.8 66 31-99 32-101 (243)
150 PF06239 ECSIT: Evolutionarily 98.1 7E-05 1.5E-09 57.6 11.7 43 263-305 119-161 (228)
151 PF08579 RPM2: Mitochondrial r 98.1 5.2E-05 1.1E-09 51.5 9.7 79 146-224 29-116 (120)
152 PF10037 MRP-S27: Mitochondria 98.1 6.5E-05 1.4E-09 65.2 12.9 121 64-190 63-186 (429)
153 cd00189 TPR Tetratricopeptide 98.1 5E-05 1.1E-09 51.8 10.3 92 34-127 3-94 (100)
154 TIGR02795 tol_pal_ybgF tol-pal 98.1 8.7E-05 1.9E-09 53.2 11.7 98 32-129 3-104 (119)
155 cd00189 TPR Tetratricopeptide 98.1 5.2E-05 1.1E-09 51.7 10.0 92 3-98 8-99 (100)
156 PF01535 PPR: PPR repeat; Int 98.1 4.3E-06 9.4E-11 43.4 3.4 30 351-380 2-31 (31)
157 KOG2053 Mitochondrial inherita 98.1 0.0086 1.9E-07 55.8 31.1 224 41-277 19-256 (932)
158 PF05843 Suf: Suppressor of fo 98.1 9.3E-05 2E-09 61.8 12.9 133 32-171 2-136 (280)
159 PF12895 Apc3: Anaphase-promot 98.1 6.2E-06 1.3E-10 54.9 4.6 80 9-91 3-82 (84)
160 PRK15363 pathogenicity island 98.1 0.00017 3.7E-09 52.9 12.1 99 30-130 34-132 (157)
161 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.0002 4.3E-09 51.3 12.5 58 71-128 6-66 (119)
162 CHL00033 ycf3 photosystem I as 98.0 0.00051 1.1E-08 52.7 15.1 102 11-112 15-117 (168)
163 KOG0553 TPR repeat-containing 98.0 0.00055 1.2E-08 55.3 14.7 101 75-184 89-189 (304)
164 PF12895 Apc3: Anaphase-promot 98.0 1.4E-05 3E-10 53.2 5.0 82 44-126 2-83 (84)
165 PF01535 PPR: PPR repeat; Int 98.0 8.1E-06 1.8E-10 42.3 3.0 29 249-277 2-30 (31)
166 PF07079 DUF1347: Protein of u 98.0 0.0089 1.9E-07 51.4 30.0 384 4-400 15-546 (549)
167 PLN03088 SGT1, suppressor of 98.0 0.00032 6.9E-09 60.8 14.0 89 39-129 10-98 (356)
168 PF05843 Suf: Suppressor of fo 98.0 0.00049 1.1E-08 57.5 14.7 131 68-206 2-136 (280)
169 PRK10153 DNA-binding transcrip 97.9 0.00079 1.7E-08 61.1 16.6 137 63-206 333-482 (517)
170 PLN03088 SGT1, suppressor of 97.9 0.0002 4.3E-09 62.1 12.0 102 5-110 12-113 (356)
171 PRK10866 outer membrane biogen 97.9 0.0061 1.3E-07 49.7 19.7 177 184-377 39-240 (243)
172 PRK15363 pathogenicity island 97.9 0.00034 7.4E-09 51.3 10.7 97 68-171 36-132 (157)
173 KOG2796 Uncharacterized conser 97.8 0.005 1.1E-07 48.9 17.0 220 68-308 70-315 (366)
174 PF06239 ECSIT: Evolutionarily 97.8 0.00052 1.1E-08 52.9 11.1 104 209-329 44-153 (228)
175 PF13525 YfiO: Outer membrane 97.8 0.0047 1E-07 48.9 17.2 188 31-230 5-196 (203)
176 COG4235 Cytochrome c biogenesi 97.8 0.0016 3.4E-08 53.0 14.3 101 139-241 153-256 (287)
177 PF14938 SNAP: Soluble NSF att 97.8 0.0069 1.5E-07 50.9 19.0 94 147-240 119-224 (282)
178 PF14938 SNAP: Soluble NSF att 97.8 0.0077 1.7E-07 50.6 18.8 169 70-276 38-225 (282)
179 PRK02603 photosystem I assembl 97.7 0.004 8.7E-08 47.9 15.6 90 140-230 33-124 (172)
180 CHL00033 ycf3 photosystem I as 97.7 0.0015 3.2E-08 50.1 13.1 82 141-223 34-117 (168)
181 PF14559 TPR_19: Tetratricopep 97.7 0.00024 5.1E-09 45.0 7.3 51 79-129 3-53 (68)
182 KOG0553 TPR repeat-containing 97.7 0.003 6.4E-08 51.3 14.7 88 40-129 90-177 (304)
183 PF13432 TPR_16: Tetratricopep 97.7 0.00023 5.1E-09 44.5 7.1 59 38-98 4-62 (65)
184 PF14559 TPR_19: Tetratricopep 97.7 0.00019 4.1E-09 45.4 6.4 53 7-61 3-55 (68)
185 PF13432 TPR_16: Tetratricopep 97.7 0.00042 9.1E-09 43.3 7.4 58 148-206 3-60 (65)
186 COG4700 Uncharacterized protei 97.6 0.0052 1.1E-07 46.1 13.7 157 37-203 62-219 (251)
187 KOG2796 Uncharacterized conser 97.6 0.0087 1.9E-07 47.7 15.4 134 71-206 181-315 (366)
188 KOG2041 WD40 repeat protein [G 97.6 0.036 7.8E-07 50.6 20.8 59 317-375 1024-1083(1189)
189 PF13414 TPR_11: TPR repeat; P 97.6 0.00035 7.7E-09 44.3 6.5 64 31-96 3-67 (69)
190 KOG0550 Molecular chaperone (D 97.6 0.021 4.5E-07 48.7 18.0 50 75-124 57-106 (486)
191 PRK10153 DNA-binding transcrip 97.6 0.0078 1.7E-07 54.8 17.1 136 138-276 333-482 (517)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.012 2.5E-07 41.8 14.4 106 147-258 6-117 (120)
193 COG4235 Cytochrome c biogenesi 97.6 0.0049 1.1E-07 50.3 13.9 126 85-220 140-268 (287)
194 PF12688 TPR_5: Tetratrico pep 97.6 0.007 1.5E-07 42.9 13.2 55 75-129 9-66 (120)
195 COG3898 Uncharacterized membra 97.6 0.04 8.6E-07 46.7 30.8 300 69-383 84-397 (531)
196 PF13414 TPR_11: TPR repeat; P 97.5 0.00045 9.7E-09 43.8 6.2 64 66-129 2-66 (69)
197 KOG0550 Molecular chaperone (D 97.4 0.061 1.3E-06 46.0 22.8 265 36-309 54-351 (486)
198 COG4700 Uncharacterized protei 97.4 0.032 6.9E-07 42.1 17.4 158 73-239 62-220 (251)
199 PF13525 YfiO: Outer membrane 97.4 0.043 9.4E-07 43.5 17.5 182 70-266 8-197 (203)
200 PRK10803 tol-pal system protei 97.4 0.0032 6.9E-08 51.8 11.2 96 32-130 144-246 (263)
201 PF03704 BTAD: Bacterial trans 97.3 0.0016 3.6E-08 48.5 8.4 72 316-388 64-140 (146)
202 KOG1130 Predicted G-alpha GTPa 97.3 0.0022 4.7E-08 54.3 9.1 268 5-274 27-342 (639)
203 PRK10803 tol-pal system protei 97.3 0.0067 1.5E-07 49.9 11.8 99 69-171 145-246 (263)
204 PF03704 BTAD: Bacterial trans 97.3 0.0026 5.6E-08 47.5 8.8 57 146-203 66-122 (146)
205 PF13371 TPR_9: Tetratricopept 97.2 0.0029 6.2E-08 40.6 7.4 58 40-99 4-61 (73)
206 PF13371 TPR_9: Tetratricopept 97.1 0.0046 1E-07 39.6 7.8 56 150-206 3-58 (73)
207 PF08631 SPO22: Meiosis protei 97.0 0.16 3.5E-06 42.6 21.8 16 257-272 256-271 (278)
208 PF12921 ATP13: Mitochondrial 97.0 0.015 3.2E-07 41.7 9.8 46 209-254 49-95 (126)
209 KOG1130 Predicted G-alpha GTPa 97.0 0.03 6.6E-07 47.7 12.7 60 214-273 197-261 (639)
210 PF12921 ATP13: Mitochondrial 97.0 0.019 4.1E-07 41.1 10.1 86 30-115 1-102 (126)
211 PF13424 TPR_12: Tetratricopep 96.9 0.0023 4.9E-08 41.7 5.1 68 102-170 6-74 (78)
212 PF09205 DUF1955: Domain of un 96.9 0.05 1.1E-06 38.5 11.5 139 224-381 14-152 (161)
213 PF13424 TPR_12: Tetratricopep 96.9 0.004 8.6E-08 40.5 5.9 65 31-95 5-74 (78)
214 PF04053 Coatomer_WDAD: Coatom 96.9 0.032 6.9E-07 49.7 13.1 158 39-238 269-428 (443)
215 KOG1538 Uncharacterized conser 96.9 0.15 3.3E-06 46.3 16.8 263 69-381 558-849 (1081)
216 KOG2041 WD40 repeat protein [G 96.8 0.4 8.7E-06 44.2 23.8 206 28-273 689-904 (1189)
217 PRK15331 chaperone protein Sic 96.8 0.021 4.5E-07 42.4 9.4 95 34-130 40-134 (165)
218 PF13281 DUF4071: Domain of un 96.7 0.32 7E-06 42.0 19.4 80 179-258 143-228 (374)
219 COG3898 Uncharacterized membra 96.7 0.33 7.2E-06 41.4 28.7 284 4-308 93-392 (531)
220 PF13281 DUF4071: Domain of un 96.7 0.38 8.2E-06 41.6 19.4 172 100-276 140-334 (374)
221 PF04840 Vps16_C: Vps16, C-ter 96.6 0.1 2.2E-06 44.4 13.8 107 69-200 179-285 (319)
222 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.071 1.5E-06 46.6 12.9 64 66-129 74-140 (453)
223 KOG0543 FKBP-type peptidyl-pro 96.6 0.032 6.9E-07 47.6 10.6 126 38-170 215-354 (397)
224 PF10300 DUF3808: Protein of u 96.6 0.31 6.6E-06 44.3 17.6 164 70-241 191-376 (468)
225 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.42 9.1E-06 41.7 19.9 145 142-292 397-545 (660)
226 KOG1585 Protein required for f 96.6 0.064 1.4E-06 42.4 11.3 227 10-271 8-251 (308)
227 PRK15331 chaperone protein Sic 96.6 0.017 3.7E-07 42.9 7.8 92 73-171 43-134 (165)
228 COG3118 Thioredoxin domain-con 96.6 0.33 7.1E-06 39.9 15.9 143 76-226 143-286 (304)
229 PF13512 TPR_18: Tetratricopep 96.5 0.056 1.2E-06 39.2 9.7 62 38-99 17-79 (142)
230 PF13428 TPR_14: Tetratricopep 96.5 0.0084 1.8E-07 33.8 4.6 40 69-108 3-42 (44)
231 PF08631 SPO22: Meiosis protei 96.4 0.46 9.9E-06 39.9 23.6 53 42-95 4-64 (278)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.17 3.7E-06 44.4 13.9 69 137-206 70-141 (453)
233 PF10300 DUF3808: Protein of u 96.4 0.19 4E-06 45.6 14.8 160 112-274 199-374 (468)
234 PF13170 DUF4003: Protein of u 96.4 0.31 6.6E-06 41.1 14.9 47 195-241 80-132 (297)
235 KOG2610 Uncharacterized conser 96.4 0.18 3.8E-06 42.1 12.9 157 78-238 114-273 (491)
236 KOG3941 Intermediate in Toll s 96.3 0.051 1.1E-06 43.9 9.5 89 174-262 64-173 (406)
237 PF04053 Coatomer_WDAD: Coatom 96.3 0.63 1.4E-05 41.7 17.1 158 76-273 270-428 (443)
238 COG3118 Thioredoxin domain-con 96.2 0.58 1.3E-05 38.5 14.8 151 37-198 140-293 (304)
239 COG4649 Uncharacterized protei 96.2 0.36 7.9E-06 36.2 13.2 134 66-206 58-196 (221)
240 COG1729 Uncharacterized protei 96.2 0.1 2.2E-06 42.3 10.4 100 31-131 142-245 (262)
241 PF04840 Vps16_C: Vps16, C-ter 96.1 0.74 1.6E-05 39.3 25.7 48 218-269 183-230 (319)
242 KOG0543 FKBP-type peptidyl-pro 96.1 0.13 2.7E-06 44.1 11.2 106 74-206 215-320 (397)
243 COG1729 Uncharacterized protei 96.1 0.14 2.9E-06 41.6 11.0 98 69-171 144-244 (262)
244 smart00299 CLH Clathrin heavy 96.0 0.4 8.6E-06 35.3 14.5 126 34-188 10-136 (140)
245 KOG4555 TPR repeat-containing 96.0 0.22 4.7E-06 35.3 10.1 93 75-172 51-145 (175)
246 KOG1538 Uncharacterized conser 96.0 0.72 1.6E-05 42.2 15.8 217 34-276 601-846 (1081)
247 KOG2114 Vacuolar assembly/sort 96.0 0.77 1.7E-05 43.4 16.4 182 69-274 336-517 (933)
248 KOG3941 Intermediate in Toll s 96.0 0.094 2E-06 42.5 9.4 104 209-329 64-173 (406)
249 KOG2114 Vacuolar assembly/sort 95.9 0.89 1.9E-05 43.0 16.5 184 100-305 333-516 (933)
250 COG4649 Uncharacterized protei 95.9 0.49 1.1E-05 35.5 14.2 138 31-175 59-200 (221)
251 KOG2280 Vacuolar assembly/sort 95.8 1.6 3.5E-05 40.8 25.1 116 242-373 679-794 (829)
252 KOG4555 TPR repeat-containing 95.8 0.42 9E-06 34.0 11.5 93 149-242 50-145 (175)
253 PRK11906 transcriptional regul 95.8 0.86 1.9E-05 40.3 15.3 118 10-129 273-400 (458)
254 COG4105 ComL DNA uptake lipopr 95.8 0.79 1.7E-05 37.0 22.3 183 36-241 39-233 (254)
255 COG3629 DnrI DNA-binding trans 95.8 0.17 3.6E-06 41.7 10.4 77 179-256 155-236 (280)
256 PRK11906 transcriptional regul 95.8 1 2.2E-05 39.8 15.6 162 32-201 252-431 (458)
257 KOG2610 Uncharacterized conser 95.7 0.42 9.2E-06 40.0 12.1 153 8-167 116-272 (491)
258 PF13428 TPR_14: Tetratricopep 95.6 0.049 1.1E-06 30.6 4.9 36 145-181 4-39 (44)
259 COG5107 RNA14 Pre-mRNA 3'-end 95.5 1.6 3.4E-05 38.3 26.4 127 248-377 398-530 (660)
260 PF10602 RPN7: 26S proteasome 95.5 0.6 1.3E-05 36.0 11.9 100 31-131 36-143 (177)
261 KOG1941 Acetylcholine receptor 95.3 0.44 9.5E-06 40.3 11.2 231 7-239 18-273 (518)
262 PF09205 DUF1955: Domain of un 95.3 0.72 1.6E-05 32.9 14.0 59 183-242 92-150 (161)
263 smart00299 CLH Clathrin heavy 95.2 0.88 1.9E-05 33.5 14.1 85 71-168 11-95 (140)
264 COG3629 DnrI DNA-binding trans 95.2 0.37 8E-06 39.8 10.4 76 315-391 154-234 (280)
265 PF07079 DUF1347: Protein of u 94.9 2.5 5.4E-05 37.2 27.0 44 180-223 131-178 (549)
266 PF13431 TPR_17: Tetratricopep 94.9 0.036 7.9E-07 29.1 2.6 32 90-121 2-33 (34)
267 KOG1585 Protein required for f 94.8 1.7 3.6E-05 34.9 16.3 194 68-292 32-238 (308)
268 PF09613 HrpB1_HrpK: Bacterial 94.8 1.2 2.7E-05 33.2 12.4 51 43-96 22-73 (160)
269 KOG1550 Extracellular protein 94.7 2.8 6E-05 39.2 16.1 180 47-242 228-427 (552)
270 COG0457 NrfG FOG: TPR repeat [ 94.6 1.9 4.2E-05 34.5 24.5 224 44-276 36-265 (291)
271 COG4105 ComL DNA uptake lipopr 94.6 2 4.4E-05 34.7 21.0 59 319-378 172-233 (254)
272 PF13176 TPR_7: Tetratricopept 94.4 0.12 2.7E-06 27.4 4.2 27 351-377 1-27 (36)
273 KOG2396 HAT (Half-A-TPR) repea 94.3 3.8 8.2E-05 36.6 32.2 95 13-110 89-183 (568)
274 PF07035 Mic1: Colon cancer-as 94.3 1.8 3.8E-05 32.8 15.0 136 232-379 14-150 (167)
275 PF10602 RPN7: 26S proteasome 94.2 1.8 4E-05 33.3 11.8 94 179-274 38-140 (177)
276 PF13170 DUF4003: Protein of u 94.2 3 6.6E-05 35.2 16.8 86 158-245 78-176 (297)
277 COG4785 NlpI Lipoprotein NlpI, 93.9 2.6 5.5E-05 33.2 14.0 187 40-243 74-268 (297)
278 PF13512 TPR_18: Tetratricopep 93.6 2.1 4.5E-05 31.3 12.8 54 8-61 23-77 (142)
279 COG0457 NrfG FOG: TPR repeat [ 93.6 3.2 6.8E-05 33.3 27.1 221 80-308 36-265 (291)
280 PF13176 TPR_7: Tetratricopept 93.5 0.2 4.3E-06 26.6 3.9 24 70-93 2-25 (36)
281 PF00637 Clathrin: Region in C 93.5 0.0041 8.9E-08 46.2 -3.9 84 37-127 13-96 (143)
282 KOG2280 Vacuolar assembly/sort 93.3 7.4 0.00016 36.7 20.6 286 72-375 442-770 (829)
283 PF04184 ST7: ST7 protein; In 93.3 2.6 5.7E-05 37.6 12.0 59 71-129 263-323 (539)
284 KOG0276 Vesicle coat complex C 93.2 2.6 5.7E-05 38.5 12.1 150 79-273 598-747 (794)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 93.0 1.1 2.4E-05 29.9 7.3 45 195-239 25-69 (103)
286 PF02284 COX5A: Cytochrome c o 93.0 1.9 4.1E-05 29.2 9.0 47 195-241 28-74 (108)
287 PF02259 FAT: FAT domain; Int 93.0 5.7 0.00012 34.6 16.9 67 312-378 144-213 (352)
288 PF13431 TPR_17: Tetratricopep 93.0 0.14 3.1E-06 26.8 2.7 31 166-197 3-33 (34)
289 KOG4570 Uncharacterized conser 92.6 1.4 2.9E-05 36.7 8.9 103 137-241 59-164 (418)
290 PF09613 HrpB1_HrpK: Bacterial 92.4 3.6 7.9E-05 30.8 13.4 56 149-206 17-73 (160)
291 PF04184 ST7: ST7 protein; In 92.2 8.4 0.00018 34.7 16.8 59 181-239 263-322 (539)
292 PF00515 TPR_1: Tetratricopept 92.1 0.51 1.1E-05 24.4 4.2 28 350-377 2-29 (34)
293 PF07035 Mic1: Colon cancer-as 91.9 4.4 9.5E-05 30.7 14.7 57 180-240 92-148 (167)
294 KOG4570 Uncharacterized conser 91.9 2.1 4.5E-05 35.7 9.1 101 242-343 59-164 (418)
295 PF00515 TPR_1: Tetratricopept 91.6 0.64 1.4E-05 24.0 4.3 28 69-96 3-30 (34)
296 KOG1941 Acetylcholine receptor 91.3 8.8 0.00019 33.0 15.6 230 42-274 17-273 (518)
297 PF07719 TPR_2: Tetratricopept 91.2 0.7 1.5E-05 23.8 4.2 27 351-377 3-29 (34)
298 PF07719 TPR_2: Tetratricopept 91.2 0.75 1.6E-05 23.6 4.4 26 70-95 4-29 (34)
299 PF11207 DUF2989: Protein of u 91.2 2.9 6.2E-05 32.6 8.8 72 159-231 123-197 (203)
300 TIGR02561 HrpB1_HrpK type III 91.2 4.7 0.0001 29.7 11.3 49 80-128 23-71 (153)
301 PF13374 TPR_10: Tetratricopep 91.1 0.73 1.6E-05 25.1 4.5 29 349-377 2-30 (42)
302 PF13929 mRNA_stabil: mRNA sta 91.0 8.2 0.00018 32.1 14.1 118 9-126 142-263 (292)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 91.0 2.6 5.7E-05 28.2 7.2 62 158-220 23-84 (103)
304 KOG0276 Vesicle coat complex C 90.9 4.3 9.3E-05 37.2 10.8 151 42-238 597-747 (794)
305 PF04097 Nic96: Nup93/Nic96; 90.9 15 0.00033 35.0 15.7 89 183-276 264-356 (613)
306 COG4785 NlpI Lipoprotein NlpI, 90.5 7.4 0.00016 30.8 14.5 182 79-276 77-266 (297)
307 PF02284 COX5A: Cytochrome c o 90.2 4.3 9.3E-05 27.6 9.3 78 32-110 9-88 (108)
308 COG1747 Uncharacterized N-term 90.1 14 0.00031 33.4 21.4 166 65-242 64-235 (711)
309 COG4455 ImpE Protein of avirul 90.0 2.6 5.7E-05 33.2 7.6 58 37-96 7-64 (273)
310 PF13929 mRNA_stabil: mRNA sta 89.9 10 0.00022 31.5 15.5 117 80-201 141-262 (292)
311 PRK15180 Vi polysaccharide bio 89.7 15 0.00032 33.0 13.3 132 37-177 295-426 (831)
312 PRK15180 Vi polysaccharide bio 89.7 9.2 0.0002 34.2 11.5 126 74-207 296-421 (831)
313 TIGR02508 type_III_yscG type I 89.4 5 0.00011 27.2 7.9 88 9-105 19-106 (115)
314 PF11207 DUF2989: Protein of u 89.1 7.4 0.00016 30.4 9.6 74 46-121 121-198 (203)
315 COG3947 Response regulator con 89.1 12 0.00026 31.1 15.0 59 179-238 281-339 (361)
316 KOG1920 IkappaB kinase complex 89.1 11 0.00025 37.6 12.7 17 7-23 863-879 (1265)
317 PF13374 TPR_10: Tetratricopep 88.9 1.3 2.7E-05 24.1 4.2 28 68-95 3-30 (42)
318 KOG2066 Vacuolar assembly/sort 88.8 23 0.00049 33.9 23.5 151 7-169 368-532 (846)
319 PF09477 Type_III_YscG: Bacter 88.6 6.1 0.00013 27.1 8.3 87 9-104 20-106 (116)
320 KOG1464 COP9 signalosome, subu 88.5 13 0.00027 30.6 17.7 179 26-205 21-219 (440)
321 KOG0890 Protein kinase of the 88.4 43 0.00094 36.8 25.4 62 314-378 1670-1731(2382)
322 TIGR03504 FimV_Cterm FimV C-te 88.2 1.2 2.5E-05 25.0 3.6 26 354-379 4-29 (44)
323 PF00637 Clathrin: Region in C 87.8 0.3 6.4E-06 36.2 1.4 84 184-274 14-97 (143)
324 KOG4234 TPR repeat-containing 87.7 7.6 0.00017 30.3 8.7 57 149-206 141-197 (271)
325 COG1747 Uncharacterized N-term 87.5 22 0.00048 32.3 22.7 164 100-276 65-234 (711)
326 PF13181 TPR_8: Tetratricopept 87.2 2.4 5.2E-05 21.7 4.4 28 350-377 2-29 (34)
327 KOG4648 Uncharacterized conser 87.2 1.6 3.5E-05 36.8 5.3 88 39-129 105-193 (536)
328 KOG4648 Uncharacterized conser 87.0 3.7 8E-05 34.8 7.2 93 5-101 107-199 (536)
329 PF08424 NRDE-2: NRDE-2, neces 86.7 20 0.00043 30.9 14.1 99 28-128 16-129 (321)
330 KOG4234 TPR repeat-containing 86.3 11 0.00024 29.4 8.9 61 36-98 139-199 (271)
331 PF04097 Nic96: Nup93/Nic96; 86.0 33 0.00071 32.8 15.5 89 5-99 268-359 (613)
332 PF07721 TPR_4: Tetratricopept 85.9 1.3 2.8E-05 21.3 2.7 21 353-373 5-25 (26)
333 TIGR03504 FimV_Cterm FimV C-te 85.7 1.7 3.8E-05 24.3 3.4 23 253-275 5-27 (44)
334 KOG1258 mRNA processing protei 85.7 30 0.00064 32.0 31.4 346 8-363 92-489 (577)
335 KOG1550 Extracellular protein 85.7 32 0.0007 32.4 22.3 185 10-209 227-429 (552)
336 PF13174 TPR_6: Tetratricopept 85.4 1.2 2.5E-05 22.7 2.6 23 37-59 6-28 (33)
337 PF13174 TPR_6: Tetratricopept 85.0 2 4.4E-05 21.7 3.4 29 70-98 3-31 (33)
338 KOG1258 mRNA processing protei 85.0 32 0.0007 31.8 26.3 326 30-369 44-420 (577)
339 COG4455 ImpE Protein of avirul 84.8 18 0.00039 28.8 13.0 93 70-172 4-96 (273)
340 KOG4077 Cytochrome c oxidase, 84.6 9.1 0.0002 27.2 7.1 47 195-241 67-113 (149)
341 PRK09687 putative lyase; Provi 84.3 24 0.00051 29.7 25.7 60 29-93 35-98 (280)
342 PF08424 NRDE-2: NRDE-2, neces 84.2 26 0.00057 30.2 16.3 64 139-203 62-128 (321)
343 COG3947 Response regulator con 84.1 18 0.0004 30.1 9.6 60 69-128 281-340 (361)
344 COG2976 Uncharacterized protei 84.1 18 0.00039 28.2 14.7 117 85-207 70-189 (207)
345 PF07163 Pex26: Pex26 protein; 83.8 23 0.00049 29.4 10.0 56 184-239 90-145 (309)
346 PF13181 TPR_8: Tetratricopept 83.8 3.9 8.4E-05 20.9 4.2 27 179-205 3-29 (34)
347 PRK10941 hypothetical protein; 83.4 16 0.00035 30.4 9.5 78 69-151 183-260 (269)
348 PRK09687 putative lyase; Provi 83.0 27 0.00058 29.4 27.2 217 140-379 35-264 (280)
349 PF10345 Cohesin_load: Cohesin 82.9 45 0.00098 31.9 30.8 198 65-273 28-251 (608)
350 PF02259 FAT: FAT domain; Int 82.8 31 0.00068 30.0 21.8 28 248-275 147-174 (352)
351 PF10345 Cohesin_load: Cohesin 82.7 46 0.001 31.9 33.7 200 28-239 27-252 (608)
352 PF13762 MNE1: Mitochondrial s 82.2 18 0.00039 26.7 9.1 92 25-116 31-130 (145)
353 PF14669 Asp_Glu_race_2: Putat 81.9 22 0.00048 27.6 12.1 25 182-206 137-161 (233)
354 KOG2300 Uncharacterized conser 81.7 40 0.00088 30.5 18.6 131 41-171 333-474 (629)
355 TIGR02561 HrpB1_HrpK type III 81.7 19 0.00041 26.7 13.8 68 32-101 8-78 (153)
356 PF11663 Toxin_YhaV: Toxin wit 81.6 2 4.3E-05 30.8 3.1 34 289-324 105-138 (140)
357 PF07163 Pex26: Pex26 protein; 81.1 30 0.00065 28.8 9.8 87 37-124 89-181 (309)
358 PF14689 SPOB_a: Sensor_kinase 80.3 4.3 9.3E-05 24.8 4.0 45 331-377 7-51 (62)
359 PF06552 TOM20_plant: Plant sp 79.9 19 0.0004 27.7 7.8 77 83-173 51-138 (186)
360 KOG0686 COP9 signalosome, subu 79.8 43 0.00092 29.5 14.3 63 68-130 151-216 (466)
361 PF11846 DUF3366: Domain of un 79.2 12 0.00026 29.4 7.3 33 345-377 140-172 (193)
362 KOG2063 Vacuolar assembly/sort 78.5 75 0.0016 31.6 18.9 118 103-223 506-637 (877)
363 PF10579 Rapsyn_N: Rapsyn N-te 78.3 7.7 0.00017 25.0 4.6 48 326-373 18-67 (80)
364 PF12862 Apc5: Anaphase-promot 77.5 15 0.00034 24.6 6.5 56 41-97 8-71 (94)
365 KOG2066 Vacuolar assembly/sort 77.5 71 0.0015 30.9 24.6 105 38-154 363-467 (846)
366 PHA02875 ankyrin repeat protei 77.3 23 0.0005 31.8 9.5 206 150-385 7-231 (413)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 77.0 25 0.00054 25.3 9.0 42 85-126 81-124 (126)
368 KOG4077 Cytochrome c oxidase, 76.8 13 0.00029 26.5 5.8 46 298-343 68-113 (149)
369 KOG4507 Uncharacterized conser 76.6 20 0.00043 33.2 8.3 104 6-112 618-721 (886)
370 smart00028 TPR Tetratricopepti 76.4 7 0.00015 18.8 3.8 25 70-94 4-28 (34)
371 PF11663 Toxin_YhaV: Toxin wit 76.1 3.9 8.5E-05 29.4 3.2 32 154-187 107-138 (140)
372 PF08311 Mad3_BUB1_I: Mad3/BUB 75.2 28 0.00061 25.1 7.8 42 297-338 81-123 (126)
373 PF11848 DUF3368: Domain of un 75.0 13 0.00029 21.2 4.8 33 325-357 13-45 (48)
374 PF06552 TOM20_plant: Plant sp 75.0 36 0.00078 26.2 13.1 27 194-222 97-123 (186)
375 KOG0687 26S proteasome regulat 74.8 53 0.0012 28.0 15.6 90 250-341 107-208 (393)
376 KOG2063 Vacuolar assembly/sort 74.5 97 0.0021 30.9 19.5 116 33-154 506-638 (877)
377 KOG4507 Uncharacterized conser 74.2 32 0.00068 31.9 8.9 115 140-256 605-719 (886)
378 PF10579 Rapsyn_N: Rapsyn N-te 74.1 4.8 0.0001 25.9 2.9 47 43-89 18-65 (80)
379 COG5159 RPN6 26S proteasome re 73.4 53 0.0012 27.5 11.3 127 147-273 8-151 (421)
380 COG2909 MalT ATP-dependent tra 72.6 1E+02 0.0022 30.4 27.1 222 153-374 426-684 (894)
381 KOG1586 Protein required for f 72.2 51 0.0011 26.7 18.3 13 9-21 28-40 (288)
382 KOG4642 Chaperone-dependent E3 72.1 52 0.0011 26.8 10.6 102 78-186 21-126 (284)
383 PHA02875 ankyrin repeat protei 71.9 75 0.0016 28.5 16.0 203 112-349 10-230 (413)
384 PF11846 DUF3366: Domain of un 71.8 22 0.00048 27.8 7.0 53 43-98 120-175 (193)
385 PF12862 Apc5: Anaphase-promot 71.6 27 0.00059 23.5 6.5 54 325-378 9-70 (94)
386 KOG1920 IkappaB kinase complex 70.7 1.3E+02 0.0029 30.8 21.6 43 85-128 775-819 (1265)
387 PF14853 Fis1_TPR_C: Fis1 C-te 70.6 15 0.00033 21.6 4.4 20 323-342 10-29 (53)
388 PF14689 SPOB_a: Sensor_kinase 70.2 18 0.00038 22.1 4.8 46 228-275 6-51 (62)
389 PF07575 Nucleopor_Nup85: Nup8 69.6 57 0.0012 30.9 10.2 77 197-275 390-466 (566)
390 COG2909 MalT ATP-dependent tra 69.5 1.2E+02 0.0026 29.9 25.5 197 186-382 424-651 (894)
391 cd00280 TRFH Telomeric Repeat 69.4 43 0.00094 25.9 7.4 66 296-364 86-158 (200)
392 KOG0686 COP9 signalosome, subu 68.3 86 0.0019 27.8 14.0 175 142-322 150-352 (466)
393 KOG3364 Membrane protein invol 66.5 48 0.001 24.2 7.2 72 28-99 29-103 (149)
394 PF14561 TPR_20: Tetratricopep 66.3 36 0.00079 22.7 7.5 51 66-116 21-73 (90)
395 PF10366 Vps39_1: Vacuolar sor 66.3 40 0.00086 23.5 6.5 26 145-170 42-67 (108)
396 cd00280 TRFH Telomeric Repeat 66.2 47 0.001 25.7 7.1 62 330-391 85-153 (200)
397 COG0735 Fur Fe2+/Zn2+ uptake r 65.8 53 0.0011 24.4 7.4 41 166-207 10-50 (145)
398 cd08819 CARD_MDA5_2 Caspase ac 65.8 36 0.00079 22.5 6.3 66 298-369 21-86 (88)
399 PRK10564 maltose regulon perip 65.4 15 0.00033 30.7 4.9 43 64-106 253-297 (303)
400 PF11848 DUF3368: Domain of un 64.9 24 0.00052 20.2 5.0 29 190-218 15-43 (48)
401 smart00386 HAT HAT (Half-A-TPR 63.7 17 0.00036 17.9 4.0 24 83-106 3-26 (33)
402 PRK10564 maltose regulon perip 60.5 22 0.00049 29.8 5.0 38 352-389 260-297 (303)
403 KOG4567 GTPase-activating prot 60.2 76 0.0016 26.9 7.8 44 232-275 263-306 (370)
404 PF14929 TAF1_subA: TAF RNA Po 60.0 1.5E+02 0.0033 27.8 13.0 135 45-190 323-468 (547)
405 PF13762 MNE1: Mitochondrial s 60.0 69 0.0015 23.8 10.4 48 212-259 79-127 (145)
406 KOG2659 LisH motif-containing 58.2 98 0.0021 25.0 8.7 102 27-128 22-130 (228)
407 PF09670 Cas_Cas02710: CRISPR- 57.9 1.4E+02 0.003 26.6 10.5 57 149-206 138-198 (379)
408 PF14561 TPR_20: Tetratricopep 57.0 56 0.0012 21.8 8.9 58 28-85 19-76 (90)
409 KOG3807 Predicted membrane pro 56.9 1.2E+02 0.0025 26.2 8.5 57 148-204 281-338 (556)
410 PF09797 NatB_MDM20: N-acetylt 56.9 1.4E+02 0.003 26.4 15.8 29 176-204 216-244 (365)
411 PF03745 DUF309: Domain of unk 56.6 44 0.00095 20.4 4.7 17 189-205 11-27 (62)
412 PF11817 Foie-gras_1: Foie gra 56.4 97 0.0021 25.5 8.2 60 179-238 180-244 (247)
413 PF03745 DUF309: Domain of unk 56.4 44 0.00096 20.4 4.9 50 323-372 8-62 (62)
414 KOG4642 Chaperone-dependent E3 56.3 1.1E+02 0.0024 25.0 10.2 84 41-127 20-104 (284)
415 COG0790 FOG: TPR repeat, SEL1 55.9 1.2E+02 0.0027 25.5 20.8 98 7-112 53-159 (292)
416 PF09986 DUF2225: Uncharacteri 55.8 1.1E+02 0.0023 24.7 9.7 93 5-97 87-195 (214)
417 cd08819 CARD_MDA5_2 Caspase ac 55.7 58 0.0013 21.6 6.5 15 190-204 49-63 (88)
418 PF14853 Fis1_TPR_C: Fis1 C-te 55.6 41 0.00088 19.8 4.3 22 38-59 8-29 (53)
419 COG5108 RPO41 Mitochondrial DN 55.6 1E+02 0.0022 29.4 8.5 75 106-187 33-113 (1117)
420 KOG1839 Uncharacterized protei 55.1 2E+02 0.0043 30.0 11.1 132 38-170 939-1085(1236)
421 PF11817 Foie-gras_1: Foie gra 54.9 89 0.0019 25.7 7.8 58 70-127 181-244 (247)
422 COG5159 RPN6 26S proteasome re 54.7 1.3E+02 0.0028 25.3 13.2 57 181-237 129-190 (421)
423 PRK07003 DNA polymerase III su 54.1 2.3E+02 0.005 28.1 11.7 95 11-108 180-286 (830)
424 PF09454 Vps23_core: Vps23 cor 54.1 31 0.00066 21.4 3.7 50 28-79 5-54 (65)
425 PF09670 Cas_Cas02710: CRISPR- 53.9 1.6E+02 0.0035 26.2 11.5 56 185-241 139-198 (379)
426 COG4259 Uncharacterized protei 53.6 69 0.0015 21.8 5.5 54 334-389 57-110 (121)
427 COG0735 Fur Fe2+/Zn2+ uptake r 52.8 93 0.002 23.1 8.0 60 303-363 10-69 (145)
428 PRK10941 hypothetical protein; 52.7 1.4E+02 0.003 25.1 10.6 75 181-256 185-260 (269)
429 KOG1308 Hsp70-interacting prot 52.4 9.1 0.0002 32.6 1.6 87 42-130 125-211 (377)
430 PF02847 MA3: MA3 domain; Int 52.2 78 0.0017 22.0 6.6 60 146-207 6-67 (113)
431 PF02847 MA3: MA3 domain; Int 52.0 78 0.0017 22.0 7.4 62 181-244 6-69 (113)
432 PRK08691 DNA polymerase III su 51.4 2.4E+02 0.0053 27.5 11.8 94 12-108 181-286 (709)
433 KOG0376 Serine-threonine phosp 51.1 34 0.00074 30.8 4.9 87 39-128 12-99 (476)
434 KOG1464 COP9 signalosome, subu 50.5 1.5E+02 0.0032 24.7 17.6 139 137-275 21-173 (440)
435 PF13934 ELYS: Nuclear pore co 49.8 1.4E+02 0.003 24.2 13.9 56 182-240 113-168 (226)
436 COG5108 RPO41 Mitochondrial DN 49.7 85 0.0018 29.9 7.2 47 319-365 33-81 (1117)
437 PF02184 HAT: HAT (Half-A-TPR) 49.4 24 0.00051 18.2 2.2 23 46-71 2-24 (32)
438 PF07575 Nucleopor_Nup85: Nup8 49.2 68 0.0015 30.4 7.0 31 261-291 509-539 (566)
439 PF10366 Vps39_1: Vacuolar sor 48.9 89 0.0019 21.8 6.5 27 316-342 41-67 (108)
440 smart00777 Mad3_BUB1_I Mad3/BU 48.9 99 0.0021 22.3 8.7 43 84-126 80-124 (125)
441 COG4003 Uncharacterized protei 48.3 27 0.00059 22.5 2.8 23 356-378 38-60 (98)
442 KOG0376 Serine-threonine phosp 47.9 43 0.00093 30.2 5.0 105 74-187 11-115 (476)
443 KOG4567 GTPase-activating prot 47.7 1.6E+02 0.0035 25.1 7.8 73 197-274 263-345 (370)
444 PRK11639 zinc uptake transcrip 47.6 1.3E+02 0.0027 23.1 7.7 29 184-212 32-60 (169)
445 KOG4279 Serine/threonine prote 47.0 2.9E+02 0.0063 27.1 10.2 97 30-130 200-316 (1226)
446 PF02631 RecX: RecX family; I 47.0 1E+02 0.0022 21.9 10.8 48 230-278 10-57 (121)
447 KOG3364 Membrane protein invol 46.2 1.2E+02 0.0025 22.3 9.4 66 312-377 30-99 (149)
448 cd07153 Fur_like Ferric uptake 45.8 94 0.002 21.7 5.9 37 296-332 17-53 (116)
449 PF12926 MOZART2: Mitotic-spin 45.6 87 0.0019 20.7 7.6 23 164-186 30-52 (88)
450 PF09454 Vps23_core: Vps23 cor 45.5 73 0.0016 19.7 4.6 52 64-115 5-56 (65)
451 PRK08691 DNA polymerase III su 45.3 3.1E+02 0.0066 26.9 11.9 44 264-307 181-226 (709)
452 COG4941 Predicted RNA polymera 45.3 2.1E+02 0.0045 24.9 11.1 123 263-388 272-404 (415)
453 COG5191 Uncharacterized conser 45.2 51 0.0011 28.0 4.7 83 25-109 101-184 (435)
454 PRK11619 lytic murein transgly 45.1 3E+02 0.0065 26.7 31.3 117 155-274 254-373 (644)
455 PF10255 Paf67: RNA polymerase 45.1 2.3E+02 0.0051 25.4 10.3 106 100-205 74-192 (404)
456 PF05944 Phage_term_smal: Phag 45.0 1.2E+02 0.0026 22.1 6.6 47 58-105 40-86 (132)
457 PF11768 DUF3312: Protein of u 44.8 2.7E+02 0.0058 26.1 10.5 24 72-95 413-436 (545)
458 PF12796 Ank_2: Ankyrin repeat 44.7 54 0.0012 21.4 4.3 13 371-383 74-86 (89)
459 PF12926 MOZART2: Mitotic-spin 44.5 92 0.002 20.6 7.8 44 198-241 29-72 (88)
460 PRK14951 DNA polymerase III su 44.5 3E+02 0.0065 26.6 12.2 96 12-110 186-293 (618)
461 KOG2908 26S proteasome regulat 44.3 2.1E+02 0.0046 24.8 10.7 52 189-240 87-143 (380)
462 PF01475 FUR: Ferric uptake re 44.2 87 0.0019 22.1 5.5 47 318-364 11-57 (120)
463 KOG1308 Hsp70-interacting prot 44.2 25 0.00055 30.1 3.0 92 113-212 126-217 (377)
464 KOG1839 Uncharacterized protei 44.1 4.1E+02 0.0088 28.0 11.5 133 137-269 968-1121(1236)
465 PHA03100 ankyrin repeat protei 44.0 2.2E+02 0.0048 26.2 9.5 10 371-380 298-307 (480)
466 PF10475 DUF2450: Protein of u 43.7 2E+02 0.0044 24.4 12.2 111 218-336 104-219 (291)
467 KOG0991 Replication factor C, 43.6 1.8E+02 0.0039 23.8 12.1 126 146-280 134-271 (333)
468 PF11838 ERAP1_C: ERAP1-like C 42.6 2.2E+02 0.0047 24.4 17.1 181 46-237 55-262 (324)
469 KOG2471 TPR repeat-containing 41.7 2.9E+02 0.0062 25.5 10.1 115 108-224 247-381 (696)
470 PF04090 RNA_pol_I_TF: RNA pol 41.6 1.6E+02 0.0035 23.3 6.8 62 315-377 42-104 (199)
471 PRK09857 putative transposase; 41.1 2.3E+02 0.0049 24.2 9.1 94 294-389 187-280 (292)
472 PRK09462 fur ferric uptake reg 41.0 1.5E+02 0.0032 22.0 8.2 36 295-330 33-68 (148)
473 PRK11639 zinc uptake transcrip 40.9 1.6E+02 0.0036 22.5 8.1 39 294-332 40-78 (169)
474 cd07153 Fur_like Ferric uptake 40.8 1E+02 0.0022 21.5 5.4 43 150-192 8-50 (116)
475 KOG0128 RNA-binding protein SA 40.6 3.8E+02 0.0082 26.6 28.6 63 325-387 473-535 (881)
476 KOG0991 Replication factor C, 38.5 2.2E+02 0.0048 23.3 11.8 102 151-256 168-281 (333)
477 COG0790 FOG: TPR repeat, SEL1 38.5 2.4E+02 0.0052 23.7 20.5 84 157-243 128-222 (292)
478 PHA02798 ankyrin-like protein; 38.3 3.3E+02 0.0072 25.3 11.2 16 231-246 88-103 (489)
479 PF09868 DUF2095: Uncharacteri 38.3 1.3E+02 0.0028 21.1 5.0 23 322-344 69-91 (128)
480 PF09477 Type_III_YscG: Bacter 38.2 1.4E+02 0.003 20.9 9.5 80 81-172 20-99 (116)
481 KOG0530 Protein farnesyltransf 38.0 2.4E+02 0.0052 23.6 18.9 134 39-182 51-186 (318)
482 KOG4279 Serine/threonine prote 37.9 4.1E+02 0.0088 26.2 14.3 69 141-212 200-280 (1226)
483 PF01475 FUR: Ferric uptake re 37.4 1E+02 0.0022 21.8 5.0 45 147-191 12-56 (120)
484 KOG2908 26S proteasome regulat 37.3 2.8E+02 0.0061 24.1 9.5 84 146-229 79-174 (380)
485 PF07678 A2M_comp: A-macroglob 36.6 2.4E+02 0.0052 23.2 12.3 82 158-241 115-221 (246)
486 smart00804 TAP_C C-terminal do 36.0 33 0.00073 21.1 1.9 22 46-67 40-61 (63)
487 PF00244 14-3-3: 14-3-3 protei 35.7 2.5E+02 0.0053 23.0 11.6 163 215-377 4-197 (236)
488 KOG0545 Aryl-hydrocarbon recep 35.7 2.5E+02 0.0055 23.2 9.3 96 33-130 180-293 (329)
489 PRK09462 fur ferric uptake reg 35.6 1.8E+02 0.004 21.5 7.2 59 203-262 8-67 (148)
490 COG2976 Uncharacterized protei 35.5 2.2E+02 0.0049 22.5 17.1 64 320-385 132-195 (207)
491 PRK14963 DNA polymerase III su 35.3 3.8E+02 0.0083 25.1 10.8 86 294-382 176-274 (504)
492 PRK14951 DNA polymerase III su 34.9 4.3E+02 0.0093 25.6 11.5 20 363-382 264-283 (618)
493 COG5187 RPN7 26S proteasome re 34.7 2.9E+02 0.0062 23.5 13.7 163 199-363 60-241 (412)
494 KOG2471 TPR repeat-containing 34.6 3.8E+02 0.0082 24.8 9.2 108 150-259 248-381 (696)
495 PHA03100 ankyrin repeat protei 34.3 3.7E+02 0.0081 24.7 13.0 14 112-125 43-56 (480)
496 PF10475 DUF2450: Protein of u 34.2 2.9E+02 0.0064 23.5 10.5 111 147-268 103-218 (291)
497 KOG2582 COP9 signalosome, subu 34.1 3.3E+02 0.0072 24.0 16.2 54 70-123 105-162 (422)
498 PHA02798 ankyrin-like protein; 33.8 3.9E+02 0.0085 24.8 10.3 117 266-384 88-214 (489)
499 PF09868 DUF2095: Uncharacteri 33.5 1.7E+02 0.0037 20.6 5.3 25 74-98 68-92 (128)
500 PRK14956 DNA polymerase III su 33.4 4E+02 0.0087 24.8 11.2 38 246-283 247-284 (484)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-61 Score=456.33 Aligned_cols=381 Identities=17% Similarity=0.215 Sum_probs=275.7
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChH
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVN 84 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (403)
+++.|+++.|.++|+.|.+ .|+.||..+|+.+|.+|++.|++++|.++|++|.+.+ +.||..+|+.+|.+|++.|+++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHH
Confidence 4456777777777777764 6777777777777777777777777777777777766 5677777777777777777777
Q ss_pred HHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHH
Q 041804 85 EAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCRE 163 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 163 (403)
+|.++|++|.+.|.. |..+|+.++.+|++.|++++|.++|.+|.... .+..||..+|+.++.+|++.|++++|.+
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~----~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET----HPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc----CCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777765 77777777777777777777777777765420 0556777777777777777777777777
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 041804 164 FWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (403)
+|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 041804 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVML 320 (403)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (403)
.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+| ++.++|.++|++|.+.|+.||..||+++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7777777777777777777777777777777777777777777777766 5567777777777777777777777777
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHH
Q 041804 321 LRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID----K-------------------GMLDMARKYDEEMFA 377 (403)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~ 377 (403)
+.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ . +..++|..+|++|++
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777654331 1 123567777777777
Q ss_pred cCCCCChhhHHHHH
Q 041804 378 KGLSAKPREELGTK 391 (403)
Q Consensus 378 ~~~~p~~~~~~~~~ 391 (403)
.|+.||..|+....
T Consensus 841 ~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 841 AGTLPTMEVLSQVL 854 (1060)
T ss_pred CCCCCCHHHHHHHH
Confidence 77777777665544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-61 Score=454.49 Aligned_cols=372 Identities=15% Similarity=0.242 Sum_probs=350.3
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 86 (403)
+.|.+++|+++|+.|. .||..+|+.++.+|++.|++++|.++|+.|.+.+ ..||..+|+.+|.+|++.|++++|
T Consensus 418 ~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 418 KQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAM 491 (1060)
T ss_pred HCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHH
Confidence 3455555555555554 2889999999999999999999999999999988 789999999999999999999999
Q ss_pred HHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 87 MGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 87 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
.++|++|.+.|+. |..+|+.++.+|++.|++++|.++|++|... +..||..+|+.++.+|++.|++++|.++|
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999987 9999999999999999999999999999887 88999999999999999999999999999
Q ss_pred HHHHh--CCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 041804 166 EEMDK--RGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 166 ~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (403)
++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 566 ~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 99976 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 041804 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVML 320 (403)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (403)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+++|.+| ++.++|.++|++|.+.|+.||..+|+++
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 6789999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 041804 321 LRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGT 390 (403)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~ 390 (403)
|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.|+.||..++...
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-55 Score=412.26 Aligned_cols=370 Identities=17% Similarity=0.269 Sum_probs=321.9
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChH
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVN 84 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (403)
+.+.|++++|+++|++|....+..||..+|+.++.+|++.++++.+..++..|...| ..||..+|+.++.+|++.|+++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~ 175 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLI 175 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHH
Confidence 356788888888888887645577888888888888888888888888888888877 6788888888888888888888
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccc-----------------------------cc
Q 041804 85 EAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGF-----------------------------SG 135 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------~~ 135 (403)
.|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|...... ..
T Consensus 176 ~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 176 DARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 88888888865 57788888888888888888888888887654110 01
Q ss_pred cccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 041804 136 LVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAY 215 (403)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (403)
.+..++..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 14566777888999999999999999999999964 58889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---
Q 041804 216 NTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL--- 292 (403)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--- 292 (403)
++++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+.+|++.|++++|.++|++|.+ ||..+|+++|.+|
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999974 6899999999988
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041804 293 EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEE-LGCSPDEFAYNALVDALIDKGMLDMARKY 371 (403)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 371 (403)
++.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 67899999999999999999999999999999999999999999999976 58999999999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHH
Q 041804 372 DEEMFAKGLSAKPREELG 389 (403)
Q Consensus 372 ~~~m~~~~~~p~~~~~~~ 389 (403)
+++| ++.|+..++..
T Consensus 485 ~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 485 IRRA---PFKPTVNMWAA 499 (697)
T ss_pred HHHC---CCCCCHHHHHH
Confidence 8765 67787766433
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-54 Score=405.85 Aligned_cols=347 Identities=14% Similarity=0.207 Sum_probs=248.1
Q ss_pred CcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHH
Q 041804 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYC 105 (403)
Q Consensus 27 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 105 (403)
...+...|+.+|..+.+.|++++|+++|+.|...++..||..+|+.++.+|.+.++++.+.+++..|.+.|.. |..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 4566778999999999999999999999999987657799999999999999999999999999999999987 999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041804 106 NLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMD 185 (403)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (403)
.++.+|++.|+++.|.++|+++.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 999999999999999999999853 6889999999999999999999999999998888777766655555
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCC-------------------------------ChhhHHHHHHHHhhcCCHHHHHHH
Q 041804 186 IMCKSGKPWKAVKLYKEMKKKGIKM-------------------------------DVVAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
+|+..|+.+.+.+++..+.+.|+.| |..+|++++.+|++.|++++|.++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 4444444444444444444444444 455555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCC
Q 041804 235 YREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIR 311 (403)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~ 311 (403)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++..| ++.++|.++|++|. .
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 5555555555555555555555555555555555555555555555555555555544 44555555555553 2
Q ss_pred CchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhH
Q 041804 312 PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA-KGLSAKPREE 387 (403)
Q Consensus 312 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~ 387 (403)
||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 455566666666666666666666666666666666666666666666666666666666666654 3666665444
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.4e-54 Score=410.72 Aligned_cols=368 Identities=17% Similarity=0.237 Sum_probs=251.9
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHh-----------------------------------HHHHHHHHHccCChhH
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDT-----------------------------------YNSVIDILGKFFEFDL 49 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~~li~~~~~~~~~~~ 49 (403)
+.+.|++++|+++|+.|.. .|+.||..+ |+.+|.+|+++|++++
T Consensus 162 ~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 4556777777777777764 455555444 4556666777777777
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhccc
Q 041804 50 SWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 50 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (403)
|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|.+.|+. |..+|+.++.+|++.|+.+.+.+++..+.
T Consensus 241 A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 241 ARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred HHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 7777777754 67777888888888888888888888888877766 77788888888888888888877777777
Q ss_pred ccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 041804 129 KNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI 208 (403)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (403)
.. +..||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+
T Consensus 316 ~~------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 316 KT------GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred Hh------CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 66 7778888888888888888888888888888763 5777888888888888888888888888888888
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc------------
Q 041804 209 KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK------------ 276 (403)
Q Consensus 209 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------ 276 (403)
.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+.+|++.|++++|.++|++|.+.
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888877777777777776542
Q ss_pred ------------------CCCCChhhHHHHHHhhC---CHHHHHHHHHHHHHcCC-------------------------
Q 041804 277 ------------------GCVPDVITYHCFFRCLE---KPREILGLFDRMIESGI------------------------- 310 (403)
Q Consensus 277 ------------------~~~p~~~~~~~l~~~~~---~~~~a~~~~~~~~~~~~------------------------- 310 (403)
++.||..||+.++.+|. ..+.+.+++..+.+.|+
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence 23444444444333221 11111122111111111
Q ss_pred -----CCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCh
Q 041804 311 -----RPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMF-AKGLSAKP 384 (403)
Q Consensus 311 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~ 384 (403)
.||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. ..|+.|+.
T Consensus 546 ~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 234444555555555566666666666666666666666666666666666666666666666665 34666655
Q ss_pred hhHH
Q 041804 385 REEL 388 (403)
Q Consensus 385 ~~~~ 388 (403)
.++.
T Consensus 626 ~~y~ 629 (857)
T PLN03077 626 KHYA 629 (857)
T ss_pred HHHH
Confidence 4443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-53 Score=406.58 Aligned_cols=359 Identities=18% Similarity=0.187 Sum_probs=222.9
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
.+.|++++|.++|+.|. .||..+||.+|.+|++.|++++|+++|++|...+ ..||..+|+.++.+|++.|+.+.
T Consensus 233 ~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 233 VKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred hcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHH
Confidence 44455555555555554 2444555555555555555555555555555444 44555555555555555444444
Q ss_pred HHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHH
Q 041804 86 AMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREF 164 (403)
Q Consensus 86 a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 164 (403)
|.+++..|.+.|.. |..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----------KDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 44444444444444 444444444444444444444444444321 2333444444444444444444444
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-------------------------------------
Q 041804 165 WEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG------------------------------------- 207 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------------- 207 (403)
|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 4444444444444444444433333333333333333333333
Q ss_pred ----------------------------CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041804 208 ----------------------------IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCE 259 (403)
Q Consensus 208 ----------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 259 (403)
+.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 3444444444444444444444444444444445555555555666677777
Q ss_pred cCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHH
Q 041804 260 NGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVV 336 (403)
Q Consensus 260 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (403)
+|++++|.++|+.+ .||..+|+++|.+| |+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 537 ~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 537 CGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred cCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 77777777777776 57899999999988 77899999999999999999999999999999999999999999
Q ss_pred HHHHH-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 041804 337 WKKME-ELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREEL 388 (403)
Q Consensus 337 ~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 388 (403)
|+.|. +.|+.|+..+|++++++|.+.|++++|.+++++| .++||..++-
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~ 661 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG 661 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 99998 6799999999999999999999999999999998 3788877543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.1e-25 Score=220.52 Aligned_cols=374 Identities=11% Similarity=0.020 Sum_probs=290.5
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
.++...|++++|++.|+.+... .+.+..++..+...+.+.|++++|..+++++...+ +.+...+..+...+...|+
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCC
Confidence 4556778999999999888742 34567788888889989999999999999887765 4566778888888999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCR 162 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 162 (403)
+++|..+++.+.+..+.+...|..+..++...|++++|...++++... .+.+...+..+...+.+.|++++|.
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-------QPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHcCCHHHHH
Confidence 999999999988877678888899999999999999999988887763 3456677888888888899999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
.+|+++.+..+. +..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+.+.+.+
T Consensus 656 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999888876554 67788888888888999999999998888774 4566777788888888899999999998888764
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHh---hCCHHHHHHHHHHHHHcCCCCchhhHHH
Q 041804 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRC---LEKPREILGLFDRMIESGIRPKMDTYVM 319 (403)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (403)
|+..++..+..++.+.|++++|.+.+..+.+.. +.+...+..+... .++.++|.++|+++.+... .+..+++.
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 444667778888888888888888888887652 2234444443333 3778888888888887654 36777888
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHhC
Q 041804 320 LLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL-SAKPREELGTKLVQG 395 (403)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~~~ 395 (403)
+...+...|+ .+|+..++++.+.. +.++.++..+..++.+.|++++|.++++++++.+. .|.....++..++..
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 8888888888 77888888887753 44566777888888888888888888888888643 333333444444443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=6.5e-25 Score=215.10 Aligned_cols=356 Identities=11% Similarity=0.030 Sum_probs=206.6
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChH
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVN 84 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (403)
+...|++++|+++++.+.. ..++++.++..+..++...|++++|...|+++.+.. +.+...+..+...+...|+++
T Consensus 441 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHhcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHH
Confidence 4456777777777777663 234556677777777777777777777777776654 234555666666777777777
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHH
Q 041804 85 EAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREF 164 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 164 (403)
+|.+.|+++...++.+..++..+...+.+.|+.++|...+.++.. ..+.+...+..+...|.+.|++++|.++
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-------LNPQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777666655666666667777677777777776666554 2234445555666666666666666666
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 041804 165 WEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ 244 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (403)
++.+.+.... +..+|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+++.+.+.. +
T Consensus 590 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 590 LNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 6666554333 45566666666666666666666666665542 2344455555666666666666666666665542 2
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHh---hCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 041804 245 PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRC---LEKPREILGLFDRMIESGIRPKMDTYVMLL 321 (403)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (403)
.+..++..+...+...|++++|..+++.+.+.+. ++...+..+... .++.++|.+.++.+.... |+..++..+.
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~ 743 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLH 743 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHH
Confidence 2345555555556666666666666655554421 122222222221 245555555555555433 2224444455
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 322 RKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.++.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|..+|+++.+.
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 55555555555555555555432 334555555555555555555555555555543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.4e-23 Score=183.73 Aligned_cols=303 Identities=14% Similarity=0.015 Sum_probs=182.2
Q ss_pred HHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----cHHHHHHHHHHHHhc
Q 041804 39 DILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK----DEVSYCNLVDALCEY 114 (403)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~ 114 (403)
..+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+.. ...++..+...|...
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34455566666666666666654 233445666666666666666666666666554322 123455556666666
Q ss_pred CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHHc
Q 041804 115 KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL----HSYSIYMDIMCKS 190 (403)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 190 (403)
|++++|...|.++.. ..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+...
T Consensus 121 g~~~~A~~~~~~~l~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 121 GLLDRAEELFLQLVD-------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred CCHHHHHHHHHHHHc-------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 666666666665554 22344555566666666666666666666666554433211 1233444455555
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 041804 191 GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVL 270 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 270 (403)
|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...+
T Consensus 194 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 194 GDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666655542 22333445555555556666666666665555422222334455555555555555555555
Q ss_pred HhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHH
Q 041804 271 AEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEF 350 (403)
Q Consensus 271 ~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 350 (403)
+++. +. .|+...+..++..+.+.|++++|..+++++.+. .|+..
T Consensus 273 ~~~~--------------------------------~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 273 RRAL--------------------------------EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred HHHH--------------------------------Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 5544 32 245556677888889999999999999988775 58888
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhH
Q 041804 351 AYNALVDALID---KGMLDMARKYDEEMFAKGLSAKPREE 387 (403)
Q Consensus 351 ~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~ 387 (403)
.++.++..+.. .|+.+++..++++|..+++.|+|...
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 88888877664 55888999999999998888888743
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=8.6e-23 Score=180.25 Aligned_cols=300 Identities=13% Similarity=0.090 Sum_probs=244.6
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhcC
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP--NHATFRIMFKRYVTAH 81 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 81 (403)
.....|++++|++.|+.+... .+.+..++..+...+...|++++|..+++.+...+...+ ....+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 345668999999999999852 345677899999999999999999999999988542111 1356888999999999
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc---chHHHHHHHHHHHhcCCh
Q 041804 82 LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN---KTKIYNMILRGWFKMSWW 158 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 158 (403)
++++|+.+|+++.+..+.+..++..++..+...|++++|...+..+.... ...+ ....+..+...+.+.|++
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-----GDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999998876688899999999999999999999999887642 1111 123456788889999999
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 041804 159 GKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238 (403)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 238 (403)
++|.+.|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......++..+..+|...|++++|...++.+
T Consensus 197 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887544 567888899999999999999999999998643333467888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh------CCHHHHHHHHHHHHHcCCCC
Q 041804 239 REMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL------EKPREILGLFDRMIESGIRP 312 (403)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~------~~~~~a~~~~~~~~~~~~~~ 312 (403)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++... ++..++..+++.+.+.++.|
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 886 456666788999999999999999999998875 57777777666542 25667888888888766666
Q ss_pred chh
Q 041804 313 KMD 315 (403)
Q Consensus 313 ~~~ 315 (403)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 655
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=5.6e-20 Score=170.21 Aligned_cols=323 Identities=10% Similarity=-0.030 Sum_probs=132.9
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
+..+.+.|++++|..+++...... +-+...+..++.+....|+++.|+..|+++.+..+.+...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 344444444444444444444432 122233333334444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHH
Q 041804 118 IEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAV 197 (403)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 197 (403)
++|...+++... ..+.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++|.
T Consensus 127 ~~Ai~~l~~Al~-------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 127 ATVADLAEQAWL-------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence 444444444443 123333444444444444444444444444443332221 1122111 1234444444444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH----HHHHHHhc
Q 041804 198 KLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE----AYAVLAEM 273 (403)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~ 273 (403)
..++.+......++......+..++...|++++|...++.+.+... .+...+..+...+...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 4444444332112222223333344444444444444444444321 133344444444444444443 44444444
Q ss_pred hhcCCCCC-hhhHHH---HHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCH
Q 041804 274 PKKGCVPD-VITYHC---FFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDE 349 (403)
Q Consensus 274 ~~~~~~p~-~~~~~~---l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 349 (403)
.+. .|+ ...+.. ++...++.++|...+++..+.... +...+..+..++.+.|++++|...++++.+. .|+.
T Consensus 277 l~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 277 LQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred Hhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 432 222 111111 112224444444444444443221 2233334444444445555555444444433 1221
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 350 -FAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 350 -~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
..+..+..++...|+.++|...|++..+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1222223344444555555544444443
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.3e-19 Score=168.25 Aligned_cols=361 Identities=12% Similarity=-0.016 Sum_probs=274.8
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+.... ..|++..|..+..+|.+.|++++|+..++...+.. +.+..+|..+..+|...|+
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCC
Confidence 456678999999999999875 46788889999999999999999999999999875 3457789999999999999
Q ss_pred hHHHHHHHHHHhhcCCC-cH-----------------------------HHHHHHHH-----------------------
Q 041804 83 VNEAMGTFNKLDEFGLK-DE-----------------------------VSYCNLVD----------------------- 109 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~-~~-----------------------------~~~~~l~~----------------------- 109 (403)
+++|+.-|......+.. +. ..+..+..
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998776554332211 10 00000000
Q ss_pred -------HH------HhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 041804 110 -------AL------CEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 110 -------~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 176 (403)
.. ...+.+++|...|++...... ..+.....++.+...+...|++++|...|++..+..+. +
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 00 112467788888887765310 12345667888889999999999999999999887554 5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041804 177 LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKL 256 (403)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (403)
...|..+..++...|++++|...|+...+.. +.+..++..+...+...|++++|...|+...+... .+...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHH
Confidence 6788899999999999999999999998874 44577888899999999999999999999998743 356778888899
Q ss_pred HHhcCcHHHHHHHHHhchhcCCCCC-hhhHHH---HHHhhCCHHHHHHHHHHHHHcCCCCchh------hHHHHHHHHHh
Q 041804 257 LCENGRVREAYAVLAEMPKKGCVPD-VITYHC---FFRCLEKPREILGLFDRMIESGIRPKMD------TYVMLLRKFGR 326 (403)
Q Consensus 257 ~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~---l~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~ 326 (403)
+.+.|++++|+..|++..+. .|+ ...++. ++...++.++|.+.|++........+.. .++.....+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999998764 343 333333 3344588999999999988753321111 12222223344
Q ss_pred cCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 327 WGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.|++++|.+++++..+.. +.+...+..+...+.+.|++++|.++|++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 699999999999988764 345567889999999999999999999998774
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.4e-19 Score=166.08 Aligned_cols=320 Identities=9% Similarity=-0.005 Sum_probs=260.7
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
.++|++++|+.+++..... .+.+...+..++.++...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 53 ~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHH
Confidence 4579999999999998853 34456677778888889999999999999999976 3556788899999999999999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
|+..|++..+..+.+...+..+..++...|++++|...+..+... .+.+...+..+ ..+...|++++|...+
T Consensus 129 Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-------~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 129 VADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-------VPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999999999998889999999999999999999999999877653 23333444443 3478899999999999
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH----HHHHHHHHHHc
Q 041804 166 EEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDF----AMRVYREMREM 241 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~ 241 (403)
+.+.+....++...+..+..++...|++++|...++++.... +.+...+..+...+...|++++ |...|+.+.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 999887654455566667788999999999999999999874 4466788889999999999985 89999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhh-HHH---HHHhhCCHHHHHHHHHHHHHcCCCCch-hh
Q 041804 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVIT-YHC---FFRCLEKPREILGLFDRMIESGIRPKM-DT 316 (403)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~---l~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 316 (403)
.+ .+...+..+...+.+.|++++|...+++..+. .|+... +.. +....++.++|...++.+.... |+. ..
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 43 36778999999999999999999999998875 455332 222 2334589999999999998764 343 33
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 317 YVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
+..+..++...|++++|...|++..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444567889999999999999999875
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2.3e-19 Score=177.22 Aligned_cols=357 Identities=10% Similarity=-0.004 Sum_probs=232.8
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHH------------
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFR------------ 71 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 71 (403)
.+...|++++|+..|+...+. .+.+..++..+..++.+.|++++|+..|++..+..+..+....|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 345679999999999998852 244788999999999999999999999999988652222222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHH
Q 041804 72 IMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151 (403)
Q Consensus 72 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (403)
.....+.+.|++++|+..|+++.+..+.+...+..+..++...|++++|++.|++..... +.+..++..+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-------p~~~~a~~~L~~l 428 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-------PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 224567789999999999999999988788899999999999999999999999887632 3333334333333
Q ss_pred ------------------------------------------HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 041804 152 ------------------------------------------WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 152 ------------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (403)
+...|++++|.+.|++..+..+. +...+..+...|.+
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34456666666666666555443 44555555566666
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHhc
Q 041804 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVV---------TCNTVIKLLCEN 260 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~ 260 (403)
.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 666666666666655432 1122233333333444555555555555443221111111 112234455566
Q ss_pred CcHHHHHHHHHhchhcCCCCChhhHH---HHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHH
Q 041804 261 GRVREAYAVLAEMPKKGCVPDVITYH---CFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVW 337 (403)
Q Consensus 261 g~~~~a~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 337 (403)
|+.++|..+++.- .++...+. .+....++.++|++.|+...+.... +...+..+...+...|++++|.+.+
T Consensus 587 G~~~eA~~~l~~~-----p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQQ-----PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHhC-----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666521 11222222 2223337788888888888876433 5677888888888888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 338 KKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
+.+.+.. +.+...+..+..++...|++++|.++++++...
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 8777642 335566677777888888888888888888765
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5.4e-19 Score=174.62 Aligned_cols=364 Identities=10% Similarity=0.013 Sum_probs=270.9
Q ss_pred cccccccccHHHHHHhhhhhcccCCCcCCHHhH------------HHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHH
Q 041804 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTY------------NSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT 69 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 69 (403)
+.++.+.|++++|++.|+...+.....+....+ ......+.+.|++++|+..|+++.+.. +.+...
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a 387 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYA 387 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 456678899999999999887532222222212 122456778999999999999999875 345677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH----------------------------------------
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD---------------------------------------- 109 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~---------------------------------------- 109 (403)
+..+..++...|++++|++.|++..+..+.+...+..+..
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 467 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ 467 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 8888999999999999999999999887665555443333
Q ss_pred --HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041804 110 --ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187 (403)
Q Consensus 110 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (403)
.+...|++++|...+++... ..+.+..++..+...|.+.|++++|...++++.+..+. +...+..+...+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~-------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l 539 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLA-------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 34456888888888888776 33556778889999999999999999999999886554 555565666667
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChh---------hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041804 188 CKSGKPWKAVKLYKEMKKKGIKMDVV---------AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLC 258 (403)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (403)
...+++++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH
Confidence 78999999999998765432222221 123456678889999999999872 2446667788899999
Q ss_pred hcCcHHHHHHHHHhchhcCCCCC-hhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHH
Q 041804 259 ENGRVREAYAVLAEMPKKGCVPD-VITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334 (403)
Q Consensus 259 ~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 334 (403)
+.|++++|+..|++..+. .|+ ...+..+...+ ++.++|.+.++.+.+... .+..++..+..++...|++++|.
T Consensus 615 ~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999876 343 44444444433 889999999998876432 24556777888899999999999
Q ss_pred HHHHHHHhcCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC
Q 041804 335 VVWKKMEELGC--SP---DEFAYNALVDALIDKGMLDMARKYDEEMFA-KGLSAK 383 (403)
Q Consensus 335 ~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~ 383 (403)
++++++....- +| +...+..+...+...|++++|...|++.+. .|+.|+
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 99999986531 22 234666678889999999999999999865 355443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=6.3e-20 Score=156.65 Aligned_cols=360 Identities=13% Similarity=0.084 Sum_probs=291.3
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcC-CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHH-HHHHHHHHHhc
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTH-TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT-FRIMFKRYVTA 80 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 80 (403)
.++..+|++++|+..++.+.. .+| ....|..+..++...|+.+.|...|.+..+.+ |+... ...+...+...
T Consensus 124 N~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhh
Confidence 345667888889998888874 344 46788888888889999999998888888855 66543 44455566667
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhH
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGK 160 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (403)
|+..+|...|.+..+..+.-..+|+.|...+-.+|+...|+..|++...- .+.-..+|-.|...|...+.++.
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-------dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-------DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC-------CCcchHHHhhHHHHHHHHhcchH
Confidence 88889999888888877767778889999999999999999999888763 34455678899999999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 161 CREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD-VVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
|...+.+.....+. ....+..|...|..+|..+.|++.|++.++. .|+ ...|+.|..++-..|++.+|.+.+.+..
T Consensus 271 Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999988876555 6678888888999999999999999999886 444 5689999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChh----hHHHHHHhhCCHHHHHHHHHHHHHcCCCCch-
Q 041804 240 EMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVI----TYHCFFRCLEKPREILGLFDRMIESGIRPKM- 314 (403)
Q Consensus 240 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~- 314 (403)
..... .....+.|...|...|.++.|..+|....+- .|... ...+++..-++.++|+..|++.++ +.|+.
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA 422 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA 422 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence 87432 4667888999999999999999999987764 44422 233455566899999999999887 45654
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 041804 315 DTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPRE 386 (403)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 386 (403)
..|+.+...|-..|+.+.|.+.+.+....+ +.-...++.|...|-..|+..+|+.-+++.++ ++||...
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 688999999999999999999999998753 22467889999999999999999999999887 5566543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=6.2e-18 Score=160.02 Aligned_cols=370 Identities=11% Similarity=-0.015 Sum_probs=247.5
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
|....|+.++|++++..... ..+.+...+..+...+...|++++|..+|++..+.. +.+...+..+..++...|++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence 44556777777777776653 123345557777777777777777777777776654 34455666677777777777
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhH---
Q 041804 84 NEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGK--- 160 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 160 (403)
++|+..++++.+..+.+.. +..+..++...|+.++|...++++.. ..+.+...+..+...+...+..+.
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-------~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP-------RAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 7777777777777666666 77777777777777777777777666 234444444445555544444443
Q ss_pred -------------------------------------------HHHHHHHHHhC-CCCCcHH-HH----HHHHHHHHHcC
Q 041804 161 -------------------------------------------CREFWEEMDKR-GVVKDLH-SY----SIYMDIMCKSG 191 (403)
Q Consensus 161 -------------------------------------------a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~ 191 (403)
|++.++.+.+. ...|+.. .+ ...+..+...|
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 44444444432 1122211 11 11133456778
Q ss_pred ChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCcHHHHH
Q 041804 192 KPWKAVKLYKEMKKKGIK-MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP---SVVTCNTVIKLLCENGRVREAY 267 (403)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~ 267 (403)
++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|..+|+.+.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999887532 332 22335678889999999999999987653221 1345566777888999999999
Q ss_pred HHHHhchhcCC-----------CCChh------hHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCc
Q 041804 268 AVLAEMPKKGC-----------VPDVI------TYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFL 330 (403)
Q Consensus 268 ~~~~~~~~~~~-----------~p~~~------~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 330 (403)
.+++.+.+... .|+.. ....++...++.++|++.++++...... +...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 99998876521 12211 1122333448899999999999876433 567888888999999999
Q ss_pred chHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 041804 331 RPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGT 390 (403)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~ 390 (403)
++|++.+++..... +.+...+......+.+.|++++|..+++++++. .|+.......
T Consensus 410 ~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 410 RAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999988764 344677777778899999999999999999884 3555544433
No 18
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.4e-16 Score=148.37 Aligned_cols=172 Identities=6% Similarity=-0.072 Sum_probs=126.4
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCH--HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhc
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTT--DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTA 80 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (403)
.+..++|+++.|++.|+.+.+ ..|+. .++ .++..+...|+.++|+.++++..... +........+...+...
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHc
Confidence 456788999999999999885 23442 344 88888899999999999999998321 23444555557788899
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhH
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGK 160 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (403)
|++++|+++|+++.+..+.++..+..++..+...++.++|+..+.++... .|+...+..++..+...++..+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--------DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--------CcchHHHHHHHHHHHhcchHHH
Confidence 99999999999999999888888888899999999999999999988764 3444445444444444556656
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 041804 161 CREFWEEMDKRGVVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (403)
|++.++++.+..+. +...+..+..++.+
T Consensus 188 AL~~~ekll~~~P~-n~e~~~~~~~~l~~ 215 (822)
T PRK14574 188 ALQASSEAVRLAPT-SEEVLKNHLEILQR 215 (822)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888888776543 33333443333333
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.6e-16 Score=147.76 Aligned_cols=339 Identities=10% Similarity=-0.049 Sum_probs=253.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
.+......+.+.|++++|+..|++..... |+...|..+..+|.+.|++++|+..++...+.++.+..++..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35567788899999999999999998854 888899999999999999999999999999998889999999999999
Q ss_pred hcCCHHHHHHHHhccccccccccc--------------------------ccCcchHHHHHH------------------
Q 041804 113 EYKHVIEAQELCFGENKNVGFSGL--------------------------VEMNKTKIYNMI------------------ 148 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~l------------------ 148 (403)
..|++++|..-+.......++... ...|........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998655433211100000 000000000000
Q ss_pred ---------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 041804 149 ---------LRGW------FKMSWWGKCREFWEEMDKRG-VVK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211 (403)
Q Consensus 149 ---------~~~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (403)
+..+ ...+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..|++..+.. +-+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 0000 12357889999999998765 222 45678888889999999999999999998863 223
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCCh-hhHHHH--
Q 041804 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV-ITYHCF-- 288 (403)
Q Consensus 212 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l-- 288 (403)
...|..+...+...|++++|...|+.+.+... .+...|..+...+...|++++|...|++..+. .|+. ..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 55788888899999999999999999988743 36788899999999999999999999998875 4543 333322
Q ss_pred -HHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCH------HHHHHHHHHHHh
Q 041804 289 -FRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDE------FAYNALVDALID 361 (403)
Q Consensus 289 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~ 361 (403)
....++.++|+..++....... -+...++.+...+...|++++|++.|++.....-..+. ..++.....+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 2234889999999999987543 25678889999999999999999999998875311111 112222333445
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 041804 362 KGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 362 ~g~~~~a~~~~~~m~~~~ 379 (403)
.|++++|.+++++....+
T Consensus 521 ~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID 538 (615)
T ss_pred hhhHHHHHHHHHHHHhcC
Confidence 799999999999988753
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1e-15 Score=145.01 Aligned_cols=342 Identities=9% Similarity=-0.027 Sum_probs=257.0
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
+.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..+|++..+..+.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4556666677888899999999999999998733 35666799999999999999999999999999988888888999
Q ss_pred HHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041804 108 VDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (403)
..++...|+.++|...++++.. ..+.+.. +..+...+...|+.++|...++++.+..+. +...+..+..++
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~-------~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l 160 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVS-------GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-------hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 9999999999999999999887 3455666 888999999999999999999999998766 666666677777
Q ss_pred HHcCChhHHHHHHH----------------------------------------------HHHHc-CCCCChh-hHH---
Q 041804 188 CKSGKPWKAVKLYK----------------------------------------------EMKKK-GIKMDVV-AYN--- 216 (403)
Q Consensus 188 ~~~~~~~~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~~--- 216 (403)
...+..++|++.++ .+.+. ...|+.. .+.
T Consensus 161 ~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 161 RNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred HHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 66666665554443 33322 1122211 111
Q ss_pred -HHHHHHhhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC---ChhhHHHHHH-
Q 041804 217 -TVIRAVGVSEGVDFAMRVYREMREMGCQ-PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP---DVITYHCFFR- 290 (403)
Q Consensus 217 -~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~- 290 (403)
..+.++...+++++|...|+.+.+.+.+ |+. ....+...|...|++++|...|+++....... .......+..
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133455778999999999999887532 332 22235778999999999999999987542111 0122333332
Q ss_pred --hhCCHHHHHHHHHHHHHcCC-----------CCc---hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHH
Q 041804 291 --CLEKPREILGLFDRMIESGI-----------RPK---MDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNA 354 (403)
Q Consensus 291 --~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (403)
..++.++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +.+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 33889999999999887531 123 1245567778889999999999999998763 567888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 041804 355 LVDALIDKGMLDMARKYDEEMFAKGLSAKP 384 (403)
Q Consensus 355 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 384 (403)
+...+...|++++|++.+++.... .|+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVL--EPRN 426 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhh--CCCC
Confidence 999999999999999999998884 4664
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=3.1e-17 Score=140.45 Aligned_cols=328 Identities=15% Similarity=0.097 Sum_probs=269.3
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
-.++|..+..++-..|++++|+.+++.+.+.. +.....|-.+..++...|+.+.|.+.|......++...-..+.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 35678888888889999999999999999865 3456789999999999999999999999998887765555666677
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (403)
.+...|+.++|..-+.+.... .+--..+|+.|...+-..|++..|+..|++....++. -...|-.|...|..
T Consensus 193 Llka~Grl~ea~~cYlkAi~~-------qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIET-------QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKE 264 (966)
T ss_pred HHHhhcccchhHHHHHHHHhh-------CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHH
Confidence 777789999998888877763 2444567889999999999999999999999887654 45688899999999
Q ss_pred cCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHH
Q 041804 190 SGKPWKAVKLYKEMKKKGIKM-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS-VVTCNTVIKLLCENGRVREAY 267 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 267 (403)
.+.++.|...|.+.... .| ....+..+...|...|.+|.|+..+++..+. .|+ +..|+.|..++-..|++.+|.
T Consensus 265 ~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHH
Confidence 99999999999888775 44 4567888888899999999999999999986 444 678999999999999999999
Q ss_pred HHHHhchhcCCCCC-hhhHHHH---HHhhCCHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 041804 268 AVLAEMPKKGCVPD-VITYHCF---FRCLEKPREILGLFDRMIESGIRPK-MDTYVMLLRKFGRWGFLRPVFVVWKKMEE 342 (403)
Q Consensus 268 ~~~~~~~~~~~~p~-~~~~~~l---~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 342 (403)
+.+...... .|+ ....+.+ -.-.++.++|..+|....+- .|. ...++.|...|-+.|++++|+..+++..+
T Consensus 341 ~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 341 DCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 999998765 332 2222323 33447889999999988874 333 45788999999999999999999999987
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 343 LGCSPD-EFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 343 ~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
++|+ ...|+.+...|-..|+.+.|.+.+.+.+.
T Consensus 417 --I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 417 --IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred --cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 4565 67899999999999999999999998876
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.4e-14 Score=119.10 Aligned_cols=274 Identities=13% Similarity=0.184 Sum_probs=195.4
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccC--ChhH-HHHHHHHhhhCC------------------CCCCC
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFF--EFDL-SWNLIHRMKDNP------------------SSIPN 66 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~-a~~~~~~~~~~~------------------~~~~~ 66 (403)
+|..+++.-+|+.|.+ .+++.+...-..|+...+-.+ ++.- -++.|-.|...+ ..+.+
T Consensus 128 ~~EvKDs~ilY~~m~~-e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 128 SREVKDSCILYERMRS-ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hcccchhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 5778888889999985 777777777666665433221 1111 112222222111 02345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
..++..||.+.++--..+.|.++|++..+...+ +..+||.+|.+-.-..+ .+++.+|... ...||..|+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq------km~Pnl~Tf 276 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ------KMTPNLFTF 276 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh------hcCCchHhH
Confidence 668999999999999999999999999888777 99999999987654433 6677777776 889999999
Q ss_pred HHHHHHHHhcCChhHH----HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhH-HHHHHHHHHHc--C--CC----CCh
Q 041804 146 NMILRGWFKMSWWGKC----REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWK-AVKLYKEMKKK--G--IK----MDV 212 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--~--~~----~~~ 212 (403)
|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.+++.+ |..++.+.... | ++ -|.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 9999999999988765 5678889999999999999999999999988865 44455554432 2 22 245
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhH
Q 041804 213 VAYNTVIRAVGVSEGVDFAMRVYREMREMG----CQPS---VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY 285 (403)
Q Consensus 213 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 285 (403)
..|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 567888888888899888888776554321 2222 223555666667777777777777777766666777666
Q ss_pred HHHHHhh
Q 041804 286 HCFFRCL 292 (403)
Q Consensus 286 ~~l~~~~ 292 (403)
..++++.
T Consensus 437 ~~~lrA~ 443 (625)
T KOG4422|consen 437 IHLLRAL 443 (625)
T ss_pred HHHHHHH
Confidence 6666654
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.5e-14 Score=126.76 Aligned_cols=283 Identities=11% Similarity=0.037 Sum_probs=216.1
Q ss_pred cCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH--HHHHHHHHhcCC
Q 041804 80 AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY--NMILRGWFKMSW 157 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~ 157 (403)
.|+++.|++.+....+........+.....+..+.|+++.|...+.++.+. .|+.... ......+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHCCC
Confidence 599999998888765543223333444455557899999999999988764 3443322 234678889999
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHhhcCCHHH
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV-------VAYNTVIRAVGVSEGVDF 230 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~ 230 (403)
++.|.+.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+.
T Consensus 169 ~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 169 NHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999998876 7888999999999999999999999999988654322 123333444444556666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH-hhCCHHHHHHHHHHHHHcC
Q 041804 231 AMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR-CLEKPREILGLFDRMIESG 309 (403)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~a~~~~~~~~~~~ 309 (403)
..++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+......... ..++.+++.+..+...+..
T Consensus 248 l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 248 LKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 67777666443 3457788888999999999999999999998875 444432221111 1167888999999988765
Q ss_pred CCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 310 IRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 310 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
.. |...+..+.+.|.+.+++++|.+.|+...+. .|+...+..+..++.+.|+.++|.+++++-..
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44 6677889999999999999999999999985 69999999999999999999999999998755
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=1.4e-14 Score=127.53 Aligned_cols=296 Identities=10% Similarity=-0.039 Sum_probs=218.4
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcch--HHH
Q 041804 70 FRIMFKRYV--TAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKT--KIY 145 (403)
Q Consensus 70 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~ 145 (403)
...+..+.. ..|+++.|.+.+.+..+..+.....+-....+....|+.+.|...+.+..+. .|+. .+.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--------~p~~~l~~~ 156 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--------AGNDNILVE 156 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcCchHHH
Confidence 344444443 5799999999999888776545666667778888999999999999987653 2332 334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH---
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV--- 222 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--- 222 (403)
-.....+...|+++.|.+.++.+.+..+. +...+..+...+...|++++|.+.+..+.+.++.++......-..++
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 44588889999999999999999998866 77889999999999999999999999999987543332212112222
Q ss_pred hhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhh-----HHHHHHh-hC
Q 041804 223 GVSEGVDFAMRVYREMREMGC---QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVIT-----YHCFFRC-LE 293 (403)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-----~~~l~~~-~~ 293 (403)
...+..+.....+..+.+... +.+...+..+...+...|+.++|.+++++..+. .||... +...... -+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCC
Confidence 222333333445555554422 137888899999999999999999999999876 344432 2222111 14
Q ss_pred CHHHHHHHHHHHHHcCCCCch--hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041804 294 KPREILGLFDRMIESGIRPKM--DTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKY 371 (403)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 371 (403)
+.+.+.+.++...+.... |+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 567788888877765322 34 567789999999999999999999654444579999999999999999999999999
Q ss_pred HHHHHH
Q 041804 372 DEEMFA 377 (403)
Q Consensus 372 ~~~m~~ 377 (403)
+++...
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 998644
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.8e-17 Score=138.79 Aligned_cols=258 Identities=12% Similarity=0.053 Sum_probs=65.9
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
++.+.|++++|++++.........+.++..|..+.......++++.|...++++...+ +-+...+..++.. ...+++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccccc
Confidence 3444455555555553322111012233333344444444555555555555555443 1123334444443 455555
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHH
Q 041804 84 NEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCRE 163 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 163 (403)
++|.+++....+.. +++..+..++..+...++++++..++..+.... ..+.+...|..+...+.+.|++++|.+
T Consensus 94 ~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 94 EEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELP-----AAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555554443322 234444445555555555555555555443221 223444455555555555555555555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 041804 164 FWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (403)
.+++..+..+. |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..+|+...+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 55555554333 44445555555555555555555555544442 3333444455555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
+.|+.....+..++.+.|+.++|..+..+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 124444455555555555555555554443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.1e-13 Score=129.25 Aligned_cols=362 Identities=10% Similarity=0.034 Sum_probs=267.2
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
.++...|++++|+++|+.+... .+.++..+..++..+...++.++|++.++++.... |+...+..++..+...++
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcch
Confidence 3566778999999999998853 34456777788888899999999999999988865 666666445444445666
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH------HHHHHHH---H
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY------NMILRGW---F 153 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~---~ 153 (403)
..+|++.++++.+..+.+...+..++.+..+.|-...|.++..+...- ..+....+ ..+++.- .
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-------f~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-------VSAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-------cCHHHHHHHHHHHHHHHHhhccccc
Confidence 666999999999988778888899999999999988888887665431 11211111 1111111 0
Q ss_pred --hcCC---hhHHHHHHHHHHh-CCCCCc-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 041804 154 --KMSW---WGKCREFWEEMDK-RGVVKD-----LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222 (403)
Q Consensus 154 --~~~~---~~~a~~~~~~~~~-~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 222 (403)
.... .+.|+.-++.+.. .+..|. ....--.+-++...+++.+|++.|+.+...+.+....+-..+..+|
T Consensus 258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 1112 3445555555544 233332 2233345668889999999999999999998776777899999999
Q ss_pred hhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcC-------------CCCChhh
Q 041804 223 GVSEGVDFAMRVYREMREMG-----CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG-------------CVPDVIT 284 (403)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~p~~~~ 284 (403)
...+++++|..+++.+.... ..++......|..+|...+++++|..+++.+.+.. ..||-..
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 99999999999999997653 23344456789999999999999999999998631 2233333
Q ss_pred HHHHHH----hhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041804 285 YHCFFR----CLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI 360 (403)
Q Consensus 285 ~~~l~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (403)
+..+.. ..++..+|.+.++.+....+. |......+...+...|.+.+|.+.++...... +-+..+....+.++.
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al 495 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHH
Confidence 333222 238899999999999876544 88899999999999999999999997776652 446777888889999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 041804 361 DKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 361 ~~g~~~~a~~~~~~m~~~ 378 (403)
..|++.+|..+.+.+.+.
T Consensus 496 ~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 496 ALQEWHQMELLTDDVISR 513 (822)
T ss_pred hhhhHHHHHHHHHHHHhh
Confidence 999999999999988774
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=5.2e-13 Score=127.47 Aligned_cols=356 Identities=8% Similarity=-0.032 Sum_probs=252.2
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
++..+++++.|.++.. . .|.......-.......+...++...++.|.+.. +-+......+.-...+.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~-~------~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 322 VLLKEGQYDAAQKLLA-T------LPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHhccHHHHHHHHhc-C------CCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccH
Confidence 3456677776665533 2 2222222222222334577888888888888863 24666666777777889999
Q ss_pred HHHHHHHHHHhhcCCC---cHHHHHHHHHHHHhcCC---HHHHHHHHh------------ccccccc-----cccc-ccC
Q 041804 84 NEAMGTFNKLDEFGLK---DEVSYCNLVDALCEYKH---VIEAQELCF------------GENKNVG-----FSGL-VEM 139 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~---~~~a~~~~~------------~~~~~~~-----~~~~-~~~ 139 (403)
++|.++|+........ +......++..|.+.+. ..++..+.. +...... .... ..+
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 9999999998774221 45566688888888776 333433311 1100000 0000 123
Q ss_pred c--chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 041804 140 N--KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNT 217 (403)
Q Consensus 140 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (403)
+ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~ 547 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLA 547 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHH
Confidence 4 67778888888877 88889999888877664 55544444555667899999999999998655 455556667
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH---hhCC
Q 041804 218 VIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR---CLEK 294 (403)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~ 294 (403)
+..++.+.|+++.|...++...+... .+...+..+.....+.|++++|...+++..+. .|+...+..+-. ..++
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 77888999999999999999988642 23333334444555669999999999999876 456555554433 4488
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041804 295 PREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEE 374 (403)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 374 (403)
.++|...+++....... +...++.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...+++
T Consensus 625 ~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 625 VPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999987544 56788888889999999999999999998864 45788899999999999999999999999
Q ss_pred HHHc
Q 041804 375 MFAK 378 (403)
Q Consensus 375 m~~~ 378 (403)
..+.
T Consensus 703 Al~l 706 (987)
T PRK09782 703 VIDD 706 (987)
T ss_pred HHhc
Confidence 9874
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=5.5e-13 Score=127.30 Aligned_cols=351 Identities=7% Similarity=-0.053 Sum_probs=252.1
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHhcCC---hH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDN-PSSIPNHATFRIMFKRYVTAHL---VN 84 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~~ 84 (403)
+...++...+..+-++ .+-+......+-....+.|+.++|.++|+..... +...++....+-++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4445555555555532 2346667777777788889999999999888762 2122344455566677766655 22
Q ss_pred HH-------------------------HHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccc
Q 041804 85 EA-------------------------MGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLV 137 (403)
Q Consensus 85 ~a-------------------------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 137 (403)
++ ...+.......+. +...|..+..++.. ++.++|...+.+....
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~------- 505 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR------- 505 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-------
Confidence 22 2233333444445 67788888888877 7888899977776653
Q ss_pred cCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 041804 138 EMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNT 217 (403)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (403)
.|+......+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...+++..+.. +.+...+..
T Consensus 506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~ 581 (987)
T PRK09782 506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWW 581 (987)
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHH
Confidence 244444444455557899999999999998665 3344556777888999999999999999998874 223333333
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHH----HHHhhC
Q 041804 218 VIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHC----FFRCLE 293 (403)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~ 293 (403)
+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|...|++.... .|+...+.. ++...+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 444445669999999999999986 457888999999999999999999999998876 465443322 333448
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041804 294 KPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDE 373 (403)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 373 (403)
+.++|+..+++..+.... +...+..+..++...|++++|...+++..+.. +-+..+.........+..+++.|.+-++
T Consensus 658 ~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 658 DIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 899999999999986543 67788999999999999999999999998763 2234566666777777888888888777
Q ss_pred HHHHcC
Q 041804 374 EMFAKG 379 (403)
Q Consensus 374 ~m~~~~ 379 (403)
+-...+
T Consensus 736 r~~~~~ 741 (987)
T PRK09782 736 RRWTFS 741 (987)
T ss_pred HHhhcC
Confidence 766533
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=5.5e-14 Score=123.17 Aligned_cols=255 Identities=9% Similarity=0.011 Sum_probs=192.0
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHH-HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHH--HHHHHHHhcC
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSV-IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFR--IMFKRYVTAH 81 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~ 81 (403)
....|+++.|.+.+..... ..+++..+..+ ..+..+.|+++.|...+.++.+.. |+..... .....+...|
T Consensus 94 a~~eGd~~~A~k~l~~~~~---~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNAD---HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHhCCCHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCC
Confidence 3446999999988887653 12334444444 445589999999999999998854 6654332 3367889999
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcch------HHHHHHHHHHHhc
Q 041804 82 LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKT------KIYNMILRGWFKM 155 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~ 155 (403)
+++.|...++++.+..+.++.....+...|.+.|++++|..++..+.+.. ...+.. .+|..++......
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----VGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998899999999999999999999999999988763 111111 2344445444555
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 041804 156 SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVY 235 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 235 (403)
.+.+...++++.+.+.- +.+......+...+...|+.++|.+++++..+. +|+.... ++.+....++.+.+.+..
T Consensus 243 ~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 56677777777765442 237778888999999999999999999998874 5555322 334444568999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 236 REMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
+...+..+ -|...+..+...+.+.+++++|.+.|+...+.
T Consensus 318 e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 318 RQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 98887743 36677888899999999999999999988764
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.9e-13 Score=121.31 Aligned_cols=365 Identities=10% Similarity=0.061 Sum_probs=273.1
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
.-+|+.++|.+++.++.++ .+.+...|.+|..+|-..|+.+++...+-...... +.|...|..+.......|++++
T Consensus 150 farg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHH
Confidence 3459999999999999853 45678899999999999999999988777666654 4677899999999999999999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
|.-+|.+..+..+++....-.-...|-+.|+...|..-|.++....+ .............++..+...++-+.|.+.+
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999988888888888889999999999999888877421 0000112223345567777888889999988
Q ss_pred HHHHhC-CCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---------------------------CCCChhhHHH
Q 041804 166 EEMDKR-GVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG---------------------------IKMDVVAYNT 217 (403)
Q Consensus 166 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~ 217 (403)
+..... +-..+...+++++..+.+...++.+......+.... +.++..++ -
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 887662 222356678899999999999999998888877621 12222221 2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---
Q 041804 218 VIRAVGVSEGVDFAMRVYREMREMG--CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL--- 292 (403)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--- 292 (403)
++-++...+..+....+.....+.. +.-+...|.-+..+|.+.|++..|+.+|..+......-+...|-.+-+++
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2334445555566666666666665 33356678889999999999999999999998764444455555554444
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCC
Q 041804 293 EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKME--------ELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
+..++|.+.|+..+..... +...-.+|...+-+.|+.++|.+++..+. ..+..|+....-...+.+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 7789999999999875432 44555667778889999999999999853 23456777777777888999999
Q ss_pred HHHHHHHHHHHHHc
Q 041804 365 LDMARKYDEEMFAK 378 (403)
Q Consensus 365 ~~~a~~~~~~m~~~ 378 (403)
.++-+.+...|+..
T Consensus 542 ~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 542 REEFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888777777764
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=7.9e-17 Score=134.97 Aligned_cols=257 Identities=16% Similarity=0.086 Sum_probs=73.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHH
Q 041804 74 FKRYVTAHLVNEAMGTFNKLDEFG-LK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151 (403)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (403)
...+.+.|++++|+++++...... ++ +...|..+...+...++.+.|...++++... .+.+...+..++..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-------~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-------DKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccccccc
Confidence 445555555555555553332222 22 4455555555555555555555555555442 12233334444444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHhhcCCHHH
Q 041804 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG-IKMDVVAYNTVIRAVGVSEGVDF 230 (403)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~ 230 (403)
...+++++|.++++...+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred -cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555443332 233444555555556666666666665554331 23344455555555556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCC
Q 041804 231 AMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGI 310 (403)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~ 310 (403)
|.+.+++..+..+. +....+.++..+...|+.+++.+++....+..
T Consensus 165 A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--------------------------------- 210 (280)
T PF13429_consen 165 ALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA--------------------------------- 210 (280)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---------------------------------
Confidence 66666666554221 34455555555655666655555555544321
Q ss_pred CCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041804 311 RPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEM 375 (403)
Q Consensus 311 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 375 (403)
+.|+..+..+..++...|++++|...+++..+.. +.|+.+...+.+++...|+.++|.++.++.
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 1233445556666666666666666666665542 345666666666666666666666665544
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=5.7e-14 Score=111.37 Aligned_cols=222 Identities=13% Similarity=0.001 Sum_probs=102.4
Q ss_pred CChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----cHHHHHHHHHHHHhcCCHHHH
Q 041804 45 FEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK----DEVSYCNLVDALCEYKHVIEA 120 (403)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a 120 (403)
++.++|.++|-+|.+.+ +.+..+.-+|.+.|-+.|..++|+++...+.++.-- ...+...|.+-|...|-++.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 44455555555555432 222334444555555555555555555554443221 112233344445555555555
Q ss_pred HHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHHcCChhHH
Q 041804 121 QELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL----HSYSIYMDIMCKSGKPWKA 196 (403)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 196 (403)
+.+|..+.... .--..+...|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|
T Consensus 127 E~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 127 EDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred HHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 55555544421 112233445555555555555555555555444433221 2344444444444555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 197 VKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
..++.+..+.+ +-....--.+-+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+.
T Consensus 200 ~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 55555554442 11222222333444455555555555555555443333444455555555555555555555554443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2.2e-13 Score=122.03 Aligned_cols=332 Identities=12% Similarity=0.014 Sum_probs=259.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
.-.....+.-.|++++|..++.++.... +.+...|.+|...|-..|+.+++...+-..-...+.|...|..+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3334444555599999999999999986 56788999999999999999999999988888888899999999999999
Q ss_pred cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH----HHHHHH
Q 041804 114 YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY----MDIMCK 189 (403)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~ 189 (403)
.|++..|.-.|.+..+ -.+++...+-.-...|-+.|+...|.+.|.++....++.|..-+..+ +..+..
T Consensus 220 ~~~i~qA~~cy~rAI~-------~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQ-------ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred cccHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 45777777778889999999999999999999988664444444443 455666
Q ss_pred cCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC-------------------------
Q 041804 190 SGKPWKAVKLYKEMKKK-GIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC------------------------- 243 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------- 243 (403)
.++.+.|.+.++..... +-..+...++.++..+.+...++.+......+.....
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 77778999998887763 2345666788999999999999999988887776211
Q ss_pred --CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC--ChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhh
Q 041804 244 --QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP--DVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDT 316 (403)
Q Consensus 244 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 316 (403)
.++..++ .+.-++......+....+.....+.++.| +...|.-+..++ +++.+|+.++..+......-+...
T Consensus 373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 1222221 22334445555555555555555555333 445565555565 789999999999998655557788
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041804 317 YVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMF 376 (403)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 376 (403)
|--+.++|...|.+++|.+.+++..... +-+...--.|...+.+.|+.++|.+.++.+.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999998863 4456667778888999999999999999875
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=1.5e-13 Score=121.18 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 041804 293 EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKME 341 (403)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 341 (403)
+++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555533332335667677777778888888888888877653
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.1e-13 Score=124.72 Aligned_cols=362 Identities=10% Similarity=0.076 Sum_probs=210.5
Q ss_pred cccccccHHHHHHhhhhhcccCCCcC-CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhc
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTH-TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH--ATFRIMFKRYVTA 80 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 80 (403)
-+...|+++.+..+...+.......+ -...|..+.++|-..|++++|..+|-+..+.. |+. ..+.-+...|.+.
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD---NDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC---CCCccccccchhHHHHHh
Confidence 34456888888888877765221111 24567888888999999999999888877754 444 3445577888899
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC----CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcC
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK----HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMS 156 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (403)
|+.+.+...|+.+.+..+.+..+...|...|+..+ ..+.|..++.+... ..+.+...|-.+...+-...
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~-------~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE-------QTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh-------cccccHHHHHHHHHHHHhcC
Confidence 99999999999998888778888888888887764 45666666666655 33566777777766666554
Q ss_pred ChhHHHHHHHH----HHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCChh------hHHHHHHHHh
Q 041804 157 WWGKCREFWEE----MDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK---GIKMDVV------AYNTVIRAVG 223 (403)
Q Consensus 157 ~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~ll~~~~ 223 (403)
-+.. +.+|.. +...+..+.+...|.+...+...|++.+|...|...... ...+|.. +--.+....-
T Consensus 429 ~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 PWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred hHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 4433 555544 334555567778888888888888888888888877654 1222221 1122333334
Q ss_pred hcCCHHHHHHHHHHHHHcCC---------------------------------CCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 041804 224 VSEGVDFAMRVYREMREMGC---------------------------------QPSVVTCNTVIKLLCENGRVREAYAVL 270 (403)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~ 270 (403)
..++.+.|.+.|..+.+..+ ..++..++.+...+.....+..|.+-|
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f 587 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKF 587 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHH
Confidence 44555555555555544311 112222222222333333333333322
Q ss_pred Hhchhc-CCCCChhhHHHH----HHhhC-----------CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHH
Q 041804 271 AEMPKK-GCVPDVITYHCF----FRCLE-----------KPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334 (403)
Q Consensus 271 ~~~~~~-~~~p~~~~~~~l----~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 334 (403)
..+... ...+|.+...+| +.++. ..++|+++|.+.++..+. |...-|-+.-.++..|++.+|.
T Consensus 588 ~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 588 ETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHH
Confidence 222211 011222221111 11111 124566666666655433 4445555555566666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 335 VVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.+|.+..+.. ..+..+|-.+..+|..+|++..|++.|+...++
T Consensus 667 dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 667 DIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666543 223445556666666666666666666665554
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.2e-12 Score=108.06 Aligned_cols=303 Identities=18% Similarity=0.248 Sum_probs=209.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHH--HHhcCChH-HHHHHHHHHhhcC---------
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKR--YVTAHLVN-EAMGTFNKLDEFG--------- 97 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~a~~~~~~~~~~~--------- 97 (403)
.+.+-|.|+.. ...|.+.++.-+|+.|.+.+ .+.+...-..|++. |-...++. .-.+.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~ 192 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKS 192 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccc
Confidence 34566666654 56789999999999999988 55555554444432 22222221 1122333332222
Q ss_pred -----------CCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHH
Q 041804 98 -----------LKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE 166 (403)
Q Consensus 98 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 166 (403)
+++..++.++|.+.++.-..+.|.+++++.... ....+..+||.++.+-.-.. -.+++.
T Consensus 193 G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~------k~kv~~~aFN~lI~~~S~~~----~K~Lv~ 262 (625)
T KOG4422|consen 193 GAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA------KGKVYREAFNGLIGASSYSV----GKKLVA 262 (625)
T ss_pred ccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh------hheeeHHhhhhhhhHHHhhc----cHHHHH
Confidence 237789999999999999999999999988776 66788889999987765432 278889
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcCChhH----HHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH-HHHHHHHHHHc
Q 041804 167 EMDKRGVVKDLHSYSIYMDIMCKSGKPWK----AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDF-AMRVYREMREM 241 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~ 241 (403)
+|....+.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999998764 56778889999999999999999999998888754 44444444432
Q ss_pred --C--CCC----CHHHHHHHHHHHHhcCcHHHHHHHHHhchhc----CCCCC--hhhH-HHH---HHhhCCHHHHHHHHH
Q 041804 242 --G--CQP----SVVTCNTVIKLLCENGRVREAYAVLAEMPKK----GCVPD--VITY-HCF---FRCLEKPREILGLFD 303 (403)
Q Consensus 242 --~--~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~-~~l---~~~~~~~~~a~~~~~ 303 (403)
| ++| +...|...+..|.+..+.+-|..+..-+... -+.|+ ...| ..+ +......+....+|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222 3455667777788888888888877655421 12222 1112 222 222244566777888
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 041804 304 RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELG 344 (403)
Q Consensus 304 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 344 (403)
.|.-.-.-|+..+...++++....|.++-.-.+|..++..|
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 88776667788888888888888888777777776665444
No 37
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1.4e-12 Score=106.70 Aligned_cols=297 Identities=12% Similarity=0.062 Sum_probs=234.2
Q ss_pred HHHHHH--hcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHH
Q 041804 73 MFKRYV--TAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILR 150 (403)
Q Consensus 73 l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (403)
+..+.. -.|++.+|+++..+-.+.+......|..-..+--..|+.+.+-.++.+..+. ...++..+.-+..+
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~------~~~~~l~v~ltrar 161 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL------AGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc------CCCchHHHHHHHHH
Confidence 444444 3699999999999988877667777888888888899999999999888775 34567777888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHh
Q 041804 151 GWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV-------VAYNTVIRAVG 223 (403)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~ 223 (403)
.....|+++.|..-++++.+.++. ++........+|.+.|+++.+..++..+.+.|.-.|. .+|..+++-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998877 7778999999999999999999999999999865554 45677777766
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh--CCHHHHHHH
Q 041804 224 VSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL--EKPREILGL 301 (403)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~a~~~ 301 (403)
..+..+.-...++..... .+-++..-.+++.-+.++|+.++|.++..+..+++..|. ...++... ++.+.-++.
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHH
Confidence 666666666666665543 344566677888889999999999999999998877666 33333332 344444444
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 041804 302 FDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381 (403)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 381 (403)
.+.-...... ++-.+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.+..++....-.+
T Consensus 317 ~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 317 AEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 5544443222 4478889999999999999999999987765 799999999999999999999999999988765444
Q ss_pred CC
Q 041804 382 AK 383 (403)
Q Consensus 382 p~ 383 (403)
|+
T Consensus 394 ~~ 395 (400)
T COG3071 394 PN 395 (400)
T ss_pred CC
Confidence 44
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.3e-13 Score=107.16 Aligned_cols=298 Identities=13% Similarity=0.120 Sum_probs=226.2
Q ss_pred hcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCCh
Q 041804 79 TAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWW 158 (403)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (403)
-.++.++|..+|-+|.+.++.+..+..+|.+.|-+.|..+.|+.+.+.+..+.+. .......+...|..-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl---T~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL---TFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHHHHhhhh
Confidence 3578999999999999988778899999999999999999999998888775321 2223345567788889999999
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhhcCCHHHHHHH
Q 041804 159 GKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV----VAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
+.|+++|..+.+.+.- -..+...|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999886543 4567889999999999999999999999887644433 2455666666678899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCC
Q 041804 235 YREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIR 311 (403)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~ 311 (403)
+.+..+.+.+ .+..--.+.+.+...|++++|.+.++...+.+..--..+...+..+| ++.++....+.++.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9999987433 44455566788999999999999999999874333345555666666 7888888888888875433
Q ss_pred CchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChh
Q 041804 312 PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID---KGMLDMARKYDEEMFAKGLSAKPR 385 (403)
Q Consensus 312 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 385 (403)
...-..+...-....-.+.|...+.+-... +|+...+..+++.-.. .|.+.+....+++|+...++.++.
T Consensus 282 --~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 282 --ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred --ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 334444444444455566666665555543 6999999999987654 456778888899998875554444
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=9.2e-12 Score=104.14 Aligned_cols=355 Identities=12% Similarity=0.091 Sum_probs=268.0
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
-|+...|.++|+.... ..|+...|++.|..=.+.+.++.|..++++..- +.|++.+|---...-.+.|+...|.
T Consensus 154 LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred hcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 3778888898865442 689999999999999999999999999999887 5699999988888888899999999
Q ss_pred HHHHHHhhcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHH
Q 041804 88 GTFNKLDEFGLK---DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREF 164 (403)
Q Consensus 88 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 164 (403)
++|+...+.-.. +...+.+....-.++..++.|.-+|.-...+. ........|..+...=-+.|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-----pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-----PKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 999887664322 44455666666667888888888888776642 1122245566666666667776555443
Q ss_pred --------HHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHH---hhcC
Q 041804 165 --------WEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV-------VAYNTVIRAV---GVSE 226 (403)
Q Consensus 165 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~---~~~~ 226 (403)
++.+.+.++. |-.+|-..++.-...|+.+...++|+..+.. ++|-. .+|-.+=-++ ....
T Consensus 303 Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555554 7778888888888899999999999999976 55532 1222221122 3578
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH---hhCCHHHHH
Q 041804 227 GVDFAMRVYREMREMGCQPSVVTCNTVIKLL----CENGRVREAYAVLAEMPKKGCVPDVITYHCFFR---CLEKPREIL 299 (403)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~a~ 299 (403)
+++.+.++++...+. ++....||.-+--.| .++.++..|.+++..... ..|-..+|...|. .+..++.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 999999999999985 555666666554444 467899999999988764 4788888777665 457889999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELG-CSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.++++.++.++. |..+|......-...|+.+.|..+|+...+.. +.-....|.+.|+.=...|.++.|..+++++++.
T Consensus 458 kLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999999998755 77889888888889999999999999998742 2234567778888888999999999999999986
Q ss_pred C
Q 041804 379 G 379 (403)
Q Consensus 379 ~ 379 (403)
.
T Consensus 537 t 537 (677)
T KOG1915|consen 537 T 537 (677)
T ss_pred c
Confidence 3
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.2e-12 Score=108.95 Aligned_cols=205 Identities=12% Similarity=0.102 Sum_probs=154.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 041804 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMR 233 (403)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 233 (403)
..|++++|.+.+++....+.. .+...-.+.-.+-..|+.++|++.|-++... +.-+..+...+...|-...+..+|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 357888999999888876433 2222222334567789999999998877554 23467778888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCC---HHHHHHHHHHHHHcCC
Q 041804 234 VYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEK---PREILGLFDRMIESGI 310 (403)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~a~~~~~~~~~~~~ 310 (403)
++-+.... ++.|+...+-|...|-+.|+-..|+..+-+--+. ++-+..+...+-..|-. +++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 98877665 5667889999999999999999999887654432 23355566655555532 5778888887654 6
Q ss_pred CCchhhHHHHHHHHH-hcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041804 311 RPKMDTYVMLLRKFG-RWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGML 365 (403)
Q Consensus 311 ~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 365 (403)
.|+..-|..++..|. +.|++++|.++++...+. ++.|.....-|++.+...|..
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 899999999887664 789999999999998765 678889999999998887753
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.5e-14 Score=123.96 Aligned_cols=288 Identities=12% Similarity=0.072 Sum_probs=206.4
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhcCChHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSS-IPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
=++++|+..|..+.. .+..+..+...+..+|...+++++|.++|+.+.+..+. ..+...|.+.+..+-+. -+--
T Consensus 333 y~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHH
Confidence 367899999998553 23344578889999999999999999999999886522 22456677666544322 1222
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHH
Q 041804 88 GTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEE 167 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 167 (403)
-+-+.+.+.++..+.+|..+..+|.-+++.+.|++.|++..+ ..+....+|+.+..-+....++|.|...|+.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-------LDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-------cCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 233445555555888899998888888888999888888877 3355777888888888888888888888888
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 041804 168 MDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSV 247 (403)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 247 (403)
.+...+. +-.+|--+...|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.|+|+++++++.....+ |+
T Consensus 481 Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 481 ALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred hhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 8776444 44555566778888888888888888888764 335566667777788888888898888888876544 33
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH----hhCCHHHHHHHHHHHHHcCCCCc
Q 041804 248 VTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR----CLEKPREILGLFDRMIESGIRPK 313 (403)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~~~a~~~~~~~~~~~~~~~ 313 (403)
..--..+..+...++.++|+..++++++. .|+..+...++. .+++.+.|+.-|--+.+...+++
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 33334456666788888888888888875 676655555443 33667777777777766544443
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=5.2e-12 Score=114.31 Aligned_cols=363 Identities=10% Similarity=0.021 Sum_probs=238.3
Q ss_pred ccccHHHHHHhhhhhcccCCCcCC--HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC---
Q 041804 7 YANDWKRALEFFNWVETDCHFTHT--TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH--- 81 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 81 (403)
.+|+++.|...|....+. .++ +..+--+.+.+.+.|+++.+...|+.+.... +.+..+...|...|...+
T Consensus 319 a~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred hhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhh
Confidence 456666666666655531 122 2334455566666666666666666666543 222334444444444332
Q ss_pred -ChHHH---------------------------------HHHHHHH----hhcCCC-cHHHHHHHHHHHHhcCCHHHHHH
Q 041804 82 -LVNEA---------------------------------MGTFNKL----DEFGLK-DEVSYCNLVDALCEYKHVIEAQE 122 (403)
Q Consensus 82 -~~~~a---------------------------------~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 122 (403)
..+.| +..|... ...+.+ .+...|.+...+...|+++.|..
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 22223 3333322 222333 66677777777888888999988
Q ss_pred HHhccccccc-ccc--cccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 041804 123 LCFGENKNVG-FSG--LVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKL 199 (403)
Q Consensus 123 ~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 199 (403)
.|........ ... .+..++..+--.+....-..++++.|.+.|..+.+..+. -+..|.-++......+...+|...
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHH
Confidence 8887665411 011 112244444445666667778999999999999886433 233444444333345778899999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCcHHHH
Q 041804 200 YKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG-CQPSVVTCNTVIKLLCE------------NGRVREA 266 (403)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~a 266 (403)
+++....+ ..+...++.+-..+.+...+..|.+-|..+.+.- ..+|+.+.-+|...|.+ .+..++|
T Consensus 553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 99988763 4455666666668888888888888777776542 23566666666665553 2356788
Q ss_pred HHHHHhchhcCCCCChhh---HHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 267 YAVLAEMPKKGCVPDVIT---YHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 267 ~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
+.+|....+.... +... ..+++...+++.+|..+|....+.... ...+|..+.++|...|++..|+++|+...+.
T Consensus 632 lq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888765211 2222 335566669999999999999987553 5568899999999999999999999988664
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 344 -GCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 344 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.-..+..+...|.+++.+.|.+.+|.+.+......
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44557889999999999999999999998877764
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-12 Score=105.62 Aligned_cols=246 Identities=10% Similarity=0.048 Sum_probs=168.5
Q ss_pred CChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHhcCCH-HHH
Q 041804 45 FEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNLVDALCEYKHV-IEA 120 (403)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~-~~a 120 (403)
...+++..=.+...+.| .+.+...-+....+.-...++++|+.+|+++.+.+|- |..+|+.++-+-...... --|
T Consensus 241 ~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 34555555555555554 3333333444445555677888888888888887654 777777776554332221 122
Q ss_pred HHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 041804 121 QELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLY 200 (403)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 200 (403)
..+++ ..+-.+.|+..+.+.|+-.++.++|...|++..+.++. ....|+.|..-|...++...|..-|
T Consensus 320 ~~v~~-----------idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 320 QNVSN-----------IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHH-----------hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22221 11233446777788888888899999999999888777 6778888889999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC
Q 041804 201 KEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP 280 (403)
Q Consensus 201 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 280 (403)
+...+-. +.|-..|-.|-++|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|.+....|-.
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 9888874 5577888889999998898888999998888763 337888999999999999999999999887765422
Q ss_pred ChhhHHHHHHhh---CCHHHHHHHHHHHH
Q 041804 281 DVITYHCFFRCL---EKPREILGLFDRMI 306 (403)
Q Consensus 281 ~~~~~~~l~~~~---~~~~~a~~~~~~~~ 306 (403)
+...+..+-..+ .+.++|...|++-+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 223333333332 44555555555444
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.4e-13 Score=115.45 Aligned_cols=280 Identities=10% Similarity=0.034 Sum_probs=140.2
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHhcCCHHHHHH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNLVDALCEYKHVIEAQE 122 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 122 (403)
+..+|...|..+.+.- .-+......+..+|...+++++|+++|+.+.+..+- +.++|.+.+.-+-+.- ++.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHH
Confidence 4456666666654432 122244455666666666666666666666665543 5566666655443211 111
Q ss_pred HH-hcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 041804 123 LC-FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYK 201 (403)
Q Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 201 (403)
.+ +.+.. ..+..+.+|.++.++|.-.++.+.|++.|++....++. ...+|+.+..-+.....+|.|...|+
T Consensus 408 ~Laq~Li~-------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 408 YLAQDLID-------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHh-------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHH
Confidence 11 12222 22344455666666666666666666666666655433 55566666666666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCC
Q 041804 202 EMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPD 281 (403)
Q Consensus 202 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 281 (403)
..+... +-+...|--+...|.+.++++.|+-.|+.+.+.++. +.+....+...+-+.|+.++|+.++++......+--
T Consensus 480 ~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 480 KALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred hhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 554331 111223333444556666666666666666654332 444445555555566666666666665543321111
Q ss_pred hhhH--HHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 041804 282 VITY--HCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEE 342 (403)
Q Consensus 282 ~~~~--~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 342 (403)
..-| ..++-..++.++|+..++++.+.-++ +...|..+...|-+.|+.+.|+.-|..+.+
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 1111 12233334445555555544443111 233344444445555555555444444443
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=1.3e-10 Score=101.21 Aligned_cols=353 Identities=9% Similarity=-0.021 Sum_probs=269.4
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 86 (403)
..+.++-|+.+|....+ -++-+...|...+..--..|..++...+|++....- +.....|-....-+-..|+...|
T Consensus 528 k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred hcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHH
Confidence 44566777778877774 234456677777777777888888888998888863 45666777777888888999999
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHH
Q 041804 87 MGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE 166 (403)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 166 (403)
..++....+..+.+...|...++....+.+++.|..+|.+.... .|+..+|.--+..---.++.++|.++++
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--------sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--------SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--------CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 99999998888778899999999999999999999998887654 5667777777777777788999999998
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 041804 167 EMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS 246 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (403)
+..+.-+. -...|..+...+-+.++.+.|.+.|..-.+. ++-....|-.+...=-+.|.+-.|..+++...-.++. +
T Consensus 676 e~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~ 752 (913)
T KOG0495|consen 676 EALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-N 752 (913)
T ss_pred HHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-c
Confidence 88775322 3456777888888888888888888776654 3444556777777777888999999999998877544 7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 041804 247 VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGR 326 (403)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 326 (403)
...|-..|++-.+.|+.+.|..+..+..+. ++.+...|.--|....+.+.--...+.+.+. .-|+.....+...|..
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWS 829 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHH
Confidence 888999999999999999999888877654 2334556666665554433322223333332 3466777788888999
Q ss_pred cCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 327 WGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 327 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
..++++|.+.|.+..+.+ +.+-.+|..+...+.++|.-++-.+++.+....
T Consensus 830 e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 999999999999999875 445678888889999999999888999888763
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=9.7e-12 Score=103.57 Aligned_cols=378 Identities=10% Similarity=0.032 Sum_probs=221.8
Q ss_pred cccccccccHHHHHHhhhhhcccC-CCcCC--HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 041804 2 ETLSCYANDWKRALEFFNWVETDC-HFTHT--TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYV 78 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 78 (403)
+.++.+++.+.+|+++|+....+- .+..+ ..+.+.+.-.+.+.|+++.|+..|+...+.. |+..+-..|+-++.
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAF 320 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhhe
Confidence 567778889999999998776421 11111 2345555556779999999999999998865 99887777777788
Q ss_pred hcCChHHHHHHHHHHhhcCCC-------------cHHHHHHH-----HHHHHhcC--CHHHHHHHHhccccccccccccc
Q 041804 79 TAHLVNEAMGTFNKLDEFGLK-------------DEVSYCNL-----VDALCEYK--HVIEAQELCFGENKNVGFSGLVE 138 (403)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~l-----~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 138 (403)
.-|+.++..+.|.+|...... +....+.. ++-.-+.+ +.+++.-.--++... .+
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiap------vi 394 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAP------VI 394 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcc------cc
Confidence 889999999999998765431 11111111 11111111 112221111111111 11
Q ss_pred CcchH---------------------HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH-----------
Q 041804 139 MNKTK---------------------IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI----------- 186 (403)
Q Consensus 139 ~~~~~---------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------- 186 (403)
.|+.. .--.-..-+.+.|+++.|.+++.-+.+.+-+.-...-+.|-..
T Consensus 395 ~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~ 474 (840)
T KOG2003|consen 395 APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFAD 474 (840)
T ss_pred ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhH
Confidence 11110 0112235678899999998888877655322111111111111
Q ss_pred -------------------------HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 187 -------------------------MCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 187 -------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
...+|++++|.+.|++.+...-......|++ --.+-..|+.++|+..|-++...
T Consensus 475 aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 475 AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH
Confidence 1224667777777777765532222222222 22344667777777777665443
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHH
Q 041804 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYV 318 (403)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (403)
+..+..+...+...|--..+...|++++.+.... ++.|+...+.+-.-| |+..+|.+.+-.--+ -++.+..+..
T Consensus 554 -l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~ie 630 (840)
T KOG2003|consen 554 -LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIE 630 (840)
T ss_pred -HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHH
Confidence 2235556666667777777777777777655432 222455555555544 333344443322211 1345667777
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhC
Q 041804 319 MLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL-IDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQG 395 (403)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~ 395 (403)
.|...|....-+++++..|++..- +.|+..-|..++..| .+.|++.+|..+++..-.+ +.-+....-.+.++.+
T Consensus 631 wl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~ 705 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhc
Confidence 777788888888889998887654 589999999887654 5699999999999987654 4334444444444443
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.59 E-value=2.8e-12 Score=104.91 Aligned_cols=198 Identities=12% Similarity=-0.027 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHH
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNM 147 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (403)
..+..+...+...|++++|...+++..+..+.+...+..+...+...|++++|.+.+++.... .+.+...+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~ 104 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-------NPNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHH
Confidence 334444444444444444444444444444334444444444444444444444444444331 1223334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC
Q 041804 148 ILRGWFKMSWWGKCREFWEEMDKRGVV-KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSE 226 (403)
Q Consensus 148 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 226 (403)
+...+...|++++|.+.+++....... .....+..+..++...|++++|...+++..... +.+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 444444455555555555444432111 122334444445555555555555555554432 223334445555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 227 GVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555555544 22234444444555555555555555554443
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=2.7e-10 Score=99.30 Aligned_cols=354 Identities=11% Similarity=0.016 Sum_probs=244.8
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhh----hCCCCCCCHH----------------
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMK----DNPSSIPNHA---------------- 68 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~---------------- 68 (403)
..|+.|.++++... ..++.+..+|.+-...=-.+|+.+...++.++-. ..| +..+..
T Consensus 420 etYenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng-v~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 420 ETYENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG-VEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc-eeecHHHHHHHHHHHhhcCChh
Confidence 34566666666665 3355566666666666666666666655554322 122 333333
Q ss_pred ---------------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcc
Q 041804 69 ---------------------TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGE 127 (403)
Q Consensus 69 ---------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (403)
+|+.-...|.+.+.++-|..+|....+..+.+...|......--..|..+....+|+++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44455555666666677777777776666666677777766666677777777777777
Q ss_pred cccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 041804 128 NKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207 (403)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 207 (403)
.. ..+.....|-.....+-..|+...|..++.+..+..+. +...|..-+.....+..++.|..+|.+....
T Consensus 577 v~-------~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 577 VE-------QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HH-------hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 66 33455556666677777778888888888888877666 7778888888888888888888888877764
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHH
Q 041804 208 IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHC 287 (403)
Q Consensus 208 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 287 (403)
.|+..+|.--+..---.++.++|.+++++..+. ++.-...|-.+.+.+-+.++++.|.+.|..-.+. .|+....=.
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWl 723 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWL 723 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHH
Confidence 567777766666666678888888888888775 2223456777778888888888888888765543 555444434
Q ss_pred HHHhh----CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc----C---------------
Q 041804 288 FFRCL----EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL----G--------------- 344 (403)
Q Consensus 288 l~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--------------- 344 (403)
++..+ +..-.|..++++..-.+.+ +...|...|+.-.+.|+.+.|..+..+..+. |
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 44333 4567888899888877655 7788999999999999999888777655432 1
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 345 ----------CSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 345 ----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
...|+...-.+...+....+++.|.+.|.+.++.+
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 23566677777788888889999999999988754
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=8.4e-12 Score=114.33 Aligned_cols=248 Identities=13% Similarity=0.074 Sum_probs=137.4
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 82 LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE---------YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
+.++|+..|++..+.++.+...|..+..++.. .+++++|...+++... ..+.+..++..+...+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-------ldP~~~~a~~~lg~~~ 348 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-------LDHNNPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHH
Confidence 34567777777777666666666655554432 2335667776666665 3345556666666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHH
Q 041804 153 FKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAM 232 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 232 (403)
...|++++|...|++..+.++. +...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|.
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHH
Confidence 7777777777777777666544 5556666666777777777777777777665321 2222223333445566777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHH-Hh-hCCHHHHHHHHHHHHHc-C
Q 041804 233 RVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFF-RC-LEKPREILGLFDRMIES-G 309 (403)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~-~~~~~~a~~~~~~~~~~-~ 309 (403)
..++++.+...+-+...+..+..++...|+.++|...+.++... .|+.......+ .. +...+++...++.+.+. .
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 77776665432223444555666666777777777777665443 33333222222 22 23334555555555431 1
Q ss_pred CCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 310 IRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 310 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
..+....+ +-..+.-.|+.+.+... +++.+.
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 12222222 23334445555555544 666543
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=6e-11 Score=97.34 Aligned_cols=297 Identities=11% Similarity=0.019 Sum_probs=221.8
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
+....|+|..|.+....... ++-.| ...|..-+.+-.+.|+.+.+-.++.+..+.. ..++....-+........|+.
T Consensus 93 ~~l~eG~~~qAEkl~~rnae-~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 93 LKLFEGDFQQAEKLLRRNAE-HGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHhcCcHHHHHHHHHHhhh-cCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCc
Confidence 34457999999999987653 43332 4456666778889999999999999999864 246677778888899999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhccccccccccc-ccCcchHHHHHHHHHHHhcCChhHHH
Q 041804 84 NEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGL-VEMNKTKIYNMILRGWFKMSWWGKCR 162 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 162 (403)
+.|..-+.++.+.++.++.......++|.+.|++.....++.++.+..-..+. -......+|+.++.-....+..+.-.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 99999999999999889999999999999999999999999998876321110 01123345777777777777777766
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
..|+..... ..-++..-..++.-+.+.|+.++|.++.++..+.+..|+.. ..-.+.+.++...-.+..+.-.+..
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC
Confidence 777776543 22255667778888889999999999999888886665521 1223456777777777777666552
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 041804 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLR 322 (403)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (403)
+-++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..
T Consensus 325 -~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~----------------------------------~~s~~~~~~la~ 369 (400)
T COG3071 325 -PEDPLLLSTLGRLALKNKLWGKASEALEAALKL----------------------------------RPSASDYAELAD 369 (400)
T ss_pred -CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc----------------------------------CCChhhHHHHHH
Confidence 235578888899999999999999888865543 467777777778
Q ss_pred HHHhcCCcchHHHHHHHHHhc
Q 041804 323 KFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~ 343 (403)
++.+.|+..+|.+..++....
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 888888888888777776543
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7.1e-11 Score=99.30 Aligned_cols=360 Identities=13% Similarity=0.035 Sum_probs=230.0
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCC-HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCC
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHT-TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH-ATFRIMFKRYVTAHL 82 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 82 (403)
+.+++++++|++.|.+... ..|+ +..|.....+|...|++++..+--....+.. |+- .++..-.+++-..|+
T Consensus 125 ~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---PDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---cHHHHHHHHHHHHHHhhcc
Confidence 4567999999999999985 5777 8889999999999999999998888887754 653 455555666666666
Q ss_pred hHHHHHHHHH-------------------------------HhhcCCC---cHHHHHHHHHHHHh--------c---C--
Q 041804 83 VNEAMGTFNK-------------------------------LDEFGLK---DEVSYCNLVDALCE--------Y---K-- 115 (403)
Q Consensus 83 ~~~a~~~~~~-------------------------------~~~~~~~---~~~~~~~l~~~~~~--------~---~-- 115 (403)
+++|+.=..- +.+.+++ ......+....+.. . +
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 6655432111 1112222 22222222222210 0 0
Q ss_pred CHHHHHHHHhcccccc----------cccccccCc--c---------hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041804 116 HVIEAQELCFGENKNV----------GFSGLVEMN--K---------TKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV 174 (403)
Q Consensus 116 ~~~~a~~~~~~~~~~~----------~~~~~~~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (403)
...++.+.+....... ...+....+ + ..+.......+.-.|+.-.|..-|+..++....
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 0111111111110000 000000011 1 122222233344568888888888888887766
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041804 175 KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVI 254 (403)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 254 (403)
++. .|--+...|....+.++..+.|....+.+ +-|..+|..=.+.+.-.++++.|..-|++....... +...|-.+.
T Consensus 359 ~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~ 435 (606)
T KOG0547|consen 359 FNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLC 435 (606)
T ss_pred cch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHH
Confidence 433 37777778889999999999999988875 446667777777777888999999999988876332 556666666
Q ss_pred HHHHhcCcHHHHHHHHHhchhcCCCCC-hhhHHHHHHhh---CCHHHHHHHHHHHHHcCCC-----Cch--hhHHHHHHH
Q 041804 255 KLLCENGRVREAYAVLAEMPKKGCVPD-VITYHCFFRCL---EKPREILGLFDRMIESGIR-----PKM--DTYVMLLRK 323 (403)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~-----~~~--~~~~~li~~ 323 (403)
.+..+.+.++++...|++..++ -|+ +..|+..-..+ ++++.|.+.|+..++.... .+. .+.-.++..
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 6677888999999999998765 233 33444443333 6688899999888764221 121 122222222
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 324 FGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
- -.+++..|.+++++..+.+ +-....|..|...-.+.|+.++|+++|++...
T Consensus 514 q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 514 Q-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred c-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 2388999999999998764 34567889999999999999999999997654
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.1e-11 Score=103.28 Aligned_cols=252 Identities=9% Similarity=0.017 Sum_probs=163.8
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCCh-HHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP-NHATFRIMFKRYVTAHLV-NEA 86 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~-~~a 86 (403)
.+.++++.-.+.... .|++.+...-+....+.-...++++|+.+|+++..+++... |..+|..++-.-...... -.|
T Consensus 241 ~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 356667666666663 77777777777777788888999999999999998863322 455666555332221111 111
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHH
Q 041804 87 MGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE 166 (403)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 166 (403)
..++ ..+--.+.|...+.+-|+-.++.++|...|++..+ -.+....+|+.+..-|....+...|.+.++
T Consensus 320 ~~v~----~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 320 QNVS----NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK-------LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHH----HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-------cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1111 11112566666667777777777777777776665 335556667777777777777777777777
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 041804 167 EMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS 246 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (403)
...+.++. |-..|-.|..+|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|.+.|......|- .+
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TE 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cc
Confidence 77766655 66777777777777777777777777766652 34566777777777777777777777777766542 24
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 247 VVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
...+..|.+.|-+.++..+|...|....+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56666777777777777777766665443
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=7.3e-12 Score=114.71 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=168.6
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH
Q 041804 48 DLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT---------AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI 118 (403)
Q Consensus 48 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (403)
++|...|++..+.. +.+...|..+..++.. .+++++|...+++..+.++.+..++..+..++...|+++
T Consensus 278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 67888888888765 2334556666555442 244788899999888888778888888888888888999
Q ss_pred HHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHH
Q 041804 119 EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVK 198 (403)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 198 (403)
+|...+++... ..+.+...+..+...+...|++++|...+++..+.++. +...+..++..+...|++++|..
T Consensus 356 ~A~~~~~~Al~-------l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 356 VGSLLFKQANL-------LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH
Confidence 99988888776 33556677888888888889999999999988887655 33333444555667888888998
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc-C
Q 041804 199 LYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK-G 277 (403)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~ 277 (403)
.++++.....+-+...+..+..++...|+.++|...+..+.... +.+....+.+...|...| ++|...++.+.+. .
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 88887765322234456667777788899999999888876542 123344455556666666 4777767665532 2
Q ss_pred CCCChhhHHHHHHhh-CCHHHHHHHHHHHHHcC
Q 041804 278 CVPDVITYHCFFRCL-EKPREILGLFDRMIESG 309 (403)
Q Consensus 278 ~~p~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~ 309 (403)
..|....+..++.++ ++.+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 233333444555544 455444444 7776654
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.1e-12 Score=104.42 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=196.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhc
Q 041804 35 NSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEY 114 (403)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (403)
+.+..+|.+.|-+.+|.+.|+.....- |-+.||..|-++|.+..++..|+.+|.+-.+.-+.+........+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 577889999999999999999888754 88889999999999999999999999998887766888888888899999
Q ss_pred CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChh
Q 041804 115 KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPW 194 (403)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (403)
++.++|.++++...+ ..+.++.....+...|.-.++++.|.++++++.+.|+. +...|+.+.-+|...++++
T Consensus 304 ~~~~~a~~lYk~vlk-------~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLK-------LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HhHHHHHHHHHHHHh-------cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 999999999988877 44667777788888888999999999999999999988 8889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041804 195 KAVKLYKEMKKKGIKMDV--VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE 272 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (403)
-++.-|.+....--.|+. .+|-.+-......||+..|.+.|+-...++.. +...+|.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999988876444443 46767777778889999999999988877543 667888888888899999999999988
Q ss_pred chhc
Q 041804 273 MPKK 276 (403)
Q Consensus 273 ~~~~ 276 (403)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7654
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=1.6e-11 Score=100.37 Aligned_cols=203 Identities=8% Similarity=-0.004 Sum_probs=170.2
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 46678888999999999999999999988765 3456788889999999999999999999999988778888899999
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (403)
.+...|++++|...+.+..... ..+.....+..+...+...|++++|.+.+++..+.... +...+..+...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 181 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYL 181 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 9999999999999999887642 22334556777888999999999999999999887544 56788889999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
.|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+...
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999998877 3446667777888888899999999988877653
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=1.8e-10 Score=87.60 Aligned_cols=201 Identities=9% Similarity=-0.044 Sum_probs=169.3
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDAL 111 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (403)
.+...|.-.|...|++..|.+-+++..+.+ +.+..+|..+...|-+.|+.+.|.+.|++..+..+.+..+.|+....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 356677778999999999999999999976 345678999999999999999999999999999988999999999999
Q ss_pred HhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Q 041804 112 CEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG 191 (403)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (403)
|..|.+++|...|++..... ....-..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P-----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 114 CAQGRPEEAMQQFERALADP-----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred HhCCChHHHHHHHHHHHhCC-----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 99999999999999888764 44455667888888889999999999999998887766 5567778888888999
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 192 KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
++-.|...++.....+. ++..+.-..|+.--..|+.+.+-++=..+...
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999988888764 78888888888888889988888877666654
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=9.3e-10 Score=97.80 Aligned_cols=313 Identities=13% Similarity=0.086 Sum_probs=194.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH-ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDAL 111 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (403)
..-....++...|++++|++.++.-... .+|. .........+.+.|+.++|..+|..+.+.++.+..-|..+..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3334456777888999998888776554 2554 45556678888889999999999999888887777777777776
Q ss_pred Hhc-----CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041804 112 CEY-----KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWW-GKCREFWEEMDKRGVVKDLHSYSIYMD 185 (403)
Q Consensus 112 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (403)
.-. .+.+....+++++.... |...+...+.-.+..-..+ ..+..++..+...|+++ +|+.+-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 332 24566677777665531 2222222221111111122 34455666777777663 6667766
Q ss_pred HHHHcCChhHHHHHHHHHHHc----C----------CCCChh--hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 041804 186 IMCKSGKPWKAVKLYKEMKKK----G----------IKMDVV--AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS-VV 248 (403)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 248 (403)
.|....+..-..+++...... + -+|+.. ++..+.+.|...|+++.|+.+++...++ .|+ +.
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 666555555555555555432 1 123332 3455677788889999999999988887 344 66
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH---hhCCHHHHHHHHHHHHHcCCCCchhhH--------
Q 041804 249 TCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR---CLEKPREILGLFDRMIESGIRPKMDTY-------- 317 (403)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-------- 317 (403)
.|..-.+.+-..|++.+|.+.++........ |...-+-... ..++.++|.+++......+..|....+
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 7777888888899999999988887765211 2222222222 226777777777777665543322211
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCH
Q 041804 318 VMLLRKFGRWGFLRPVFVVWKKMEEL--GCSPDEFAYNALVDALIDKGML 365 (403)
Q Consensus 318 ~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 365 (403)
.-...+|.+.|++..|++-|..+.+. .+.-|..-|... |.|.|.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~RK~t~ 355 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY---CLRKMTL 355 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHH---HHhhccH
Confidence 23345677888888888887777653 334444444433 5566544
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=4.1e-13 Score=79.37 Aligned_cols=49 Identities=43% Similarity=0.675 Sum_probs=27.7
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 041804 175 KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVG 223 (403)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 223 (403)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=2.2e-09 Score=95.43 Aligned_cols=264 Identities=13% Similarity=0.078 Sum_probs=188.7
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHhc--
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA-TFRIMFKRYVTA-- 80 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-- 80 (403)
|....|++++|++.++.-. ..+.............+.+.|+.++|..++..+...+ |+.. -|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhcc
Confidence 5567899999999998766 3355557778888999999999999999999999987 5554 455555555222
Q ss_pred ---CChHHHHHHHHHHhhcCCC------------c--------------------HHHHHHHHHHHHhcCCHHHHHHHHh
Q 041804 81 ---HLVNEAMGTFNKLDEFGLK------------D--------------------EVSYCNLVDALCEYKHVIEAQELCF 125 (403)
Q Consensus 81 ---~~~~~a~~~~~~~~~~~~~------------~--------------------~~~~~~l~~~~~~~~~~~~a~~~~~ 125 (403)
.+.+...++|+++...-+. + +.+|+.+-..|.......-...++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 2467777788776554431 1 1233334344443333334444444
Q ss_pred cccccc----cccc----cccCcchH--HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhH
Q 041804 126 GENKNV----GFSG----LVEMNKTK--IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWK 195 (403)
Q Consensus 126 ~~~~~~----~~~~----~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (403)
...... .+.. ...+|+.. ++..+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHH
Confidence 433221 1111 12355553 4567788899999999999999999998655 57889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhcCcHHHHH
Q 041804 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVV--------TCNTVIKLLCENGRVREAY 267 (403)
Q Consensus 196 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~ 267 (403)
|.+.++.....+ .-|...-+-.+..+.+.|++++|.+++....+.+..|... .......+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999886 3477788888889999999999999999988776433221 1244578899999999888
Q ss_pred HHHHhch
Q 041804 268 AVLAEMP 274 (403)
Q Consensus 268 ~~~~~~~ 274 (403)
+.|..+.
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 7776554
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=3.8e-13 Score=79.54 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=48.1
Q ss_pred CchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041804 312 PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID 361 (403)
Q Consensus 312 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (403)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.7e-08 Score=83.88 Aligned_cols=355 Identities=12% Similarity=0.022 Sum_probs=239.4
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChHH
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH-ATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 85 (403)
.++++..|..+|+.... +...+...|-..+.+=.++..+..|..++++....- |-+ ..|---+..--..|++..
T Consensus 85 sq~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred hHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHH
Confidence 45788889999988873 335566778888888888999999999998888753 544 345555566667788888
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
|.++|++..+.. |+..+|.+.++.-.+.+.++.|..++++.+- +.|++.+|--....=-++|+...|..+|
T Consensus 160 aRqiferW~~w~-P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 160 ARQIFERWMEWE-PDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 888888877654 4778888888888888888888888888764 3588888888888888888888888888
Q ss_pred HHHHhCCC--CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------------------------------------
Q 041804 166 EEMDKRGV--VKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK------------------------------------- 206 (403)
Q Consensus 166 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------- 206 (403)
+...+.=- ..+...+++....-.++..++.|.-+|+-.+..
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 77654210 012223333333333333444444433333221
Q ss_pred ------CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHH--------HHHHHHhcCcHHHHHHHH
Q 041804 207 ------GIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSV--VTCNT--------VIKLLCENGRVREAYAVL 270 (403)
Q Consensus 207 ------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~--------li~~~~~~g~~~~a~~~~ 270 (403)
.-+-|-.+|--.++.-...|+.+...++|+.+... ++|-. ..|.. .+..-....+.+.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 01335556666666666778888888888877765 33321 11111 111122467778888888
Q ss_pred HhchhcCCCCChhhHHHHHHhh-------CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 271 AEMPKKGCVPDVITYHCFFRCL-------EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 271 ~~~~~~~~~p~~~~~~~l~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
+...+. ++....||.-+--.+ .+...|.+++...+ |.-|-..+|...|..-.+.++++.+..++++..+.
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 877762 223455555432222 34556666666544 45677788888888888889999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 041804 344 GCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGL 380 (403)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 380 (403)
+ +-|..+|......=...|+++.|..+|+-.++...
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 5 55778888888888888999999999988877643
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=5.2e-11 Score=106.92 Aligned_cols=253 Identities=14% Similarity=0.046 Sum_probs=143.7
Q ss_pred hhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 041804 17 FFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEF 96 (403)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 96 (403)
++..+. ..|+.||..+|..+|.-|+..|+++.|- +|.-|.-.. .+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e-~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 12 FLALHE-ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHH-HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence 344444 4788899999999999999999998888 888877765 5567778888888888888777665
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHH---HHHHHhcccccccccccccCcchHHH--------------HHHHHHHHhcCChh
Q 041804 97 GLKDEVSYCNLVDALCEYKHVIE---AQELCFGENKNVGFSGLVEMNKTKIY--------------NMILRGWFKMSWWG 159 (403)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~ 159 (403)
.+.+.+|..|..+|...||... .++.+.......... |+.....-+ ...+....-.|-++
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~--Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDH--GVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhh--ccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 3577888888888888887654 222111111111101 110000000 11111122222333
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 160 KCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
.+.+++..+...... . ++...++-+.. ......++.......--.|+..+|..++.+-...|+.+.|..++..|.
T Consensus 157 qllkll~~~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHhhCCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 333333222211111 0 00001111111 122233333222222114677777777777777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh
Q 041804 240 EMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL 292 (403)
Q Consensus 240 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 292 (403)
+.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 77777777666666654 666667777777777777777777776554443
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.6e-10 Score=97.68 Aligned_cols=269 Identities=11% Similarity=0.012 Sum_probs=174.7
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 86 (403)
..+++++..++++.+.. ..++....+..-|.++...|+..+-..+=.++.+.. |....+|-.+.--|...|+..+|
T Consensus 256 ~~c~f~~c~kit~~lle--~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLE--KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HcChHHHHHHHhHHHHh--hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHH
Confidence 34567777777776663 234455555555667777777777777767776654 33456777777777777777777
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHH
Q 041804 87 MGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE 166 (403)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 166 (403)
.+.|.+....++.-...|......++-.+..+.|...+....+- .+-....+--+.--|.+.++++.|.++|.
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-------~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-------MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-------ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 77777777766666667777777777777777777776655442 12222223444555667777777777777
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCC----CChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 167 EMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK--GIK----MDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
+.....+. |+...+-+.-.....+.+.+|..+|+..+.. .+. .-..+++.|..+|.+.+..++|+..++....
T Consensus 405 ~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77766555 6666777766666677777777777766522 011 1223466677777777777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH
Q 041804 241 MGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR 290 (403)
Q Consensus 241 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 290 (403)
.. +-+..++.++.-.|...|+++.|.+.|.+..- +.|+..+...++.
T Consensus 484 l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 484 LS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred cC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 53 33677777777777777777777777776654 3566655554444
No 64
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.7e-09 Score=85.53 Aligned_cols=326 Identities=16% Similarity=0.116 Sum_probs=215.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
-+++.+..+.+..++..|++++..-.+.. +.+......+..+|.+..++..|-.+|+++-...+.-..--.--.+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 46677777788889999999988887765 3477778888889999999999999999888776652222222344555
Q ss_pred hcCCHHHHHHHHhcccccccccccccCcchHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 041804 113 EYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL--RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (403)
+.+.+.+|+.+...+... ++...-..-+ ......+++..+..++++....| +..+.+.......+.
T Consensus 90 ~A~i~ADALrV~~~~~D~---------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HhcccHHHHHHHHHhcCC---------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 677888888887776542 2222111122 23345678888888888877543 333445555556788
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC-------------CH----------
Q 041804 191 GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP-------------SV---------- 247 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------- 247 (403)
|+++.|.+-|+...+-+--.....|+..+..| +.++.+.|+++..++.++|++. |+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 89999999888887764343556777666555 6788888999888888876541 11
Q ss_pred -----HHHHHHHHHHHhcCcHHHHHHHHHhchhc-CCCCChhhHHHH--HHhhCCHHHHHHHHHHHHHcCCCCchhhHHH
Q 041804 248 -----VTCNTVIKLLCENGRVREAYAVLAEMPKK-GCVPDVITYHCF--FRCLEKPREILGLFDRMIESGIRPKMDTYVM 319 (403)
Q Consensus 248 -----~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (403)
..+|.-...+.+.|+++.|.+.+-.|..+ ....|++|...+ ...-+++.+..+-+.-+....+ ....||..
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 11222233456789999999999999733 334577776643 3444667776666666666544 35689999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 041804 320 LLRKFGRWGFLRPVFVVWKKMEELGCS-PDEFAYNALVDALID-KGMLDMARKYDEEM 375 (403)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m 375 (403)
++-.||+..-++.|-.++-+-.....+ .+...|+.| ++++- .-..++|.+-++.+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999887764433221 244555543 33332 34555555544433
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=1.7e-08 Score=88.27 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=151.1
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMG 88 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 88 (403)
++++..+++.+.+.+ +.+-...+.....-.+...|+.++|.+..+.-...+ ..+.+.|+.+.-.+-...++++|++
T Consensus 21 kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHH
Confidence 567777777777764 233334555555556667788899988888877765 4677888888888888889999999
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041804 89 TFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEM 168 (403)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 168 (403)
+|......++.|...+.-+.-.-++.++++.....-..+.+ ..+.....|..+..++.-.|++..|..++++.
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq-------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ-------LRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877888887776666677777766665555554 33445566777888888888888888888887
Q ss_pred HhCC-CCCcHHHHHHHHH------HHHHcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 169 DKRG-VVKDLHSYSIYMD------IMCKSGKPWKAVKLYKEMKKKGIKMDVV-AYNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 169 ~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
.+.. -.|+...|..... ...+.|..++|++.+..-... ..|.. .-.+-...+.+.+++++|..++..+..
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 7654 2455555544332 234456666666665544332 11222 222334455667777777777777776
Q ss_pred cCCCCCHHHHHH
Q 041804 241 MGCQPSVVTCNT 252 (403)
Q Consensus 241 ~~~~~~~~~~~~ 252 (403)
. .||..-|..
T Consensus 248 r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 248 R--NPDNLDYYE 257 (700)
T ss_pred h--CchhHHHHH
Confidence 5 344444433
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=3.3e-10 Score=90.61 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=145.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (403)
-+-+.++|.+.|.+.+|.+.++..... .|-+.+|-.|-..|.+..++..|+.++.+-.+.-+. |+....-+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ 296 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhh
Confidence 356778888888888888887766654 456667788888888888888888888877765322 55445556
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRV 263 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (403)
.+.+...++.++|.++|+...+.. +.++.....+...|.-.++++.|+++++.+.+.|+. ++..|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 677777888888888888877763 445566666666777788888888888888888876 777788888888888888
Q ss_pred HHHHHHHHhchhcCCCCChh---hHH--HHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHH
Q 041804 264 REAYAVLAEMPKKGCVPDVI---TYH--CFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWK 338 (403)
Q Consensus 264 ~~a~~~~~~~~~~~~~p~~~---~~~--~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 338 (403)
+.++..|.+....--.|+.. -|| .+....|+..-|.+.|+-...+... +...++.|.-.-.+.|+++.|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 88887777765432223211 111 1111224444444444444433222 33444444444444455555554444
Q ss_pred HHH
Q 041804 339 KME 341 (403)
Q Consensus 339 ~~~ 341 (403)
...
T Consensus 454 ~A~ 456 (478)
T KOG1129|consen 454 AAK 456 (478)
T ss_pred Hhh
Confidence 443
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=1.3e-09 Score=91.69 Aligned_cols=120 Identities=8% Similarity=-0.082 Sum_probs=61.5
Q ss_pred CChhHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 041804 45 FEFDLSWNLIHRMKDNPSSIPN--HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQE 122 (403)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (403)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+..+.+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444444444444433211122 23344555555555555555555555555555555555555555555555555555
Q ss_pred HHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 123 LCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
.|++..+ ..+.+..++..+...+...|++++|.+.|++..+.
T Consensus 120 ~~~~Al~-------l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 120 AFDSVLE-------LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555544 22333445555555555555555555555555554
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.9e-09 Score=90.09 Aligned_cols=278 Identities=10% Similarity=0.043 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
....-..-+-..+++.+..++++.+.+..+.....+..-|.++...|+..+-..+-.+++. ..|....+|.++
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-------~yP~~a~sW~aV 318 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-------LYPSKALSWFAV 318 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH-------hCCCCCcchhhH
Confidence 3444455566778888888888888888877777777777778888887777766666666 556677788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCH
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGV 228 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 228 (403)
.-.|.-.|++++|.+.|.+....+.. =...|......|+-.+..++|...|...-+. ++-....+--+---|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 88888888888888888887665444 3347888888888888888888888776654 111222233344456778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc--CCCCChhhHH-------HHHHhhCCHHHHH
Q 041804 229 DFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK--GCVPDVITYH-------CFFRCLEKPREIL 299 (403)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~-------~l~~~~~~~~~a~ 299 (403)
..|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..... .+.+...+|. ...+.+++.++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 88888888877653 346677777776666778888888888765521 1111111222 2223335566777
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041804 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359 (403)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (403)
..+++.+....+ +..++.++.-.|...|+++.|.+.|.+... +.|+-.+-..++..+
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 777776665433 666777777777777777777777776664 356655555555433
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=1.3e-07 Score=82.78 Aligned_cols=344 Identities=10% Similarity=0.115 Sum_probs=199.4
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDAL 111 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (403)
..|-..+..+.++|++......|++....-++......|...+......+-++-++++|++.++..|. .-...+..+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~---~~eeyie~L 179 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE---AREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH---HHHHHHHHH
Confidence 46677777888899999999999888876544455667888888888889999999999998875544 355566667
Q ss_pred HhcCCHHHHHHHHhccccccccccc------------------------------------ccCcc--hHHHHHHHHHHH
Q 041804 112 CEYKHVIEAQELCFGENKNVGFSGL------------------------------------VEMNK--TKIYNMILRGWF 153 (403)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~------------------------------------~~~~~--~~~~~~l~~~~~ 153 (403)
+..+++++|.+.+........+.+. +.-+| ...|.+|...|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 7888888888887776655421111 01111 134789999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH--------------------------------------------
Q 041804 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK-------------------------------------------- 189 (403)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------------------- 189 (403)
+.|.+++|..+|++....- .+..-|+.+.++|+.
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999988765431 122222222222211
Q ss_pred ----------------------cCChhHHHHHHHHHHHcCCCCC------hhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 190 ----------------------SGKPWKAVKLYKEMKKKGIKMD------VVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 190 ----------------------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
.|+..+....|.+.... +.|. ...|..+...|-..|+++.|..+|++..+.
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 12222333333333332 2221 134666777788888899999998888775
Q ss_pred CCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCC-----------CCChhhHHH---------HHHhhCCHHHH
Q 041804 242 GCQPS---VVTCNTVIKLLCENGRVREAYAVLAEMPKKGC-----------VPDVITYHC---------FFRCLEKPREI 298 (403)
Q Consensus 242 ~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~~~~~~~---------l~~~~~~~~~a 298 (403)
..+-- ..+|..-...-.+..+++.|+++.+......- ++....+++ +..++|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 43311 34555555666667778888887776543211 111122222 22345666666
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 041804 299 LGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPD-EFAYNALVDALID---KGMLDMARKYDEE 374 (403)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~a~~~~~~ 374 (403)
..+|+++++..+. ++.........+-.+.-++++.+++++-...--.|+ ...|+..+.-+.+ .-..+.|..+|++
T Consensus 497 k~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 497 KAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7777777765554 222211122222233345555555554443321232 2345544444332 2245566666666
Q ss_pred HHHcCCCCC
Q 041804 375 MFAKGLSAK 383 (403)
Q Consensus 375 m~~~~~~p~ 383 (403)
.++ |..|.
T Consensus 576 aL~-~Cpp~ 583 (835)
T KOG2047|consen 576 ALD-GCPPE 583 (835)
T ss_pred HHh-cCCHH
Confidence 665 44443
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1.4e-08 Score=89.40 Aligned_cols=253 Identities=11% Similarity=0.105 Sum_probs=161.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH-HHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC
Q 041804 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK-IYNMILRGWFKMSWWGKCREFWEEMDKR-----GV 173 (403)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 173 (403)
-..+...+...|...|+++.|..++........-......|... ..+.+...|...+++.+|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 34444556666666666666666665544321000001122222 2344667777788888888888776542 21
Q ss_pred --CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCC-CCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHHc---
Q 041804 174 --VKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-----GIK-MDV-VAYNTVIRAVGVSEGVDFAMRVYREMREM--- 241 (403)
Q Consensus 174 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 241 (403)
+.-..+++.|..+|.+.|++++|...++...+- |.. |.. ..++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 112356666777888889988888777765432 211 222 24566667788889999999888876543
Q ss_pred CCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhH
Q 041804 242 GCQP----SVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTY 317 (403)
Q Consensus 242 ~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (403)
-+.+ -..+++.|...|...|++++|.++++..... .+........-....+
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~-------------------------~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI-------------------------LRELLGKKDYGVGKPL 412 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-------------------------HHhcccCcChhhhHHH
Confidence 1112 2357888999999999999999998876542 1111111111124567
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHh----cC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 318 VMLLRKFGRWGFLRPVFVVWKKMEE----LG--CSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 318 ~~li~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
+.+...|.+.+++.+|.++|.+... .| .+-...+|..|...|.+.|+++.|.++.+....
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 7888889999999999998887643 22 223457889999999999999999999888773
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=4.2e-10 Score=101.28 Aligned_cols=269 Identities=15% Similarity=0.132 Sum_probs=164.6
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 52 NLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
.++-.+...| ..|+..||..+|.-|+..|+.+.|- +|.-|.-...+ +...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 4566677777 7899999999999999999999888 89888888888 8888898888888877766543
Q ss_pred ccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH-cCCC
Q 041804 131 VGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK-KGIK 209 (403)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~ 209 (403)
.|...+|..|..+|..+||... |+...+ ....+...+...|.-.....++..+.- .+.-
T Consensus 80 --------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~l 139 (1088)
T KOG4318|consen 80 --------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSL 139 (1088)
T ss_pred --------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccc
Confidence 5677788899999998888766 222222 122344455566665555555544322 2334
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh-cCcHHHHHHHHHhchhcCCCCChhhHHH
Q 041804 210 MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ-PSVVTCNTVIKLLCE-NGRVREAYAVLAEMPKKGCVPDVITYHC 287 (403)
Q Consensus 210 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 287 (403)
||..+ ++....-.|-++.+.+++..+...... |..+ +++-+.. ...+++-..+.+...+ .|+..+|.+
T Consensus 140 pda~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a 209 (1088)
T KOG4318|consen 140 PDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHA 209 (1088)
T ss_pred hhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHH
Confidence 45433 333334456666666666554332111 1111 1222222 1223333333333332 466666666
Q ss_pred HHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041804 288 FFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 288 l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
++.+. |+.+.|..++..|.+.|++.+..-|..|+-+ .++..-+..+++-|.+.|+.|+..|+.-.+..+.++|.
T Consensus 210 ~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 210 VLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 65533 5666677777777777766666666665544 56666666666666677777777777666666655444
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=2.3e-09 Score=94.29 Aligned_cols=244 Identities=14% Similarity=0.052 Sum_probs=179.2
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhC-----CCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHhhc-----CCC
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDN-----PSSIPNHAT-FRIMFKRYVTAHLVNEAMGTFNKLDEF-----GLK 99 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 99 (403)
..+...+...|...|+++.|..++....+. |...|...+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456777999999999999999999987764 212355443 445788899999999999999998653 222
Q ss_pred ---cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcch-HHHHHHHHHHHhcCChhHHHHHHHHHHhC---C
Q 041804 100 ---DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKT-KIYNMILRGWFKMSWWGKCREFWEEMDKR---G 172 (403)
Q Consensus 100 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 172 (403)
-..+++.|..+|.+.|++++|...++....-.........|.+ ..++.+...+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 4567888889999999999998887765543211000112222 34677778888899999999988765432 1
Q ss_pred CCC----cHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCC---CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 173 VVK----DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK----GIK---MDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 173 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
+.+ -..+++.|...|...|++++|.++++..... +.. -....++.+...|.+.++.+.|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2467899999999999999999999987654 111 12346778888999999999898888865532
Q ss_pred ----CCC--CCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 242 ----GCQ--PSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 242 ----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
|+. -...+|..|...|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 322 235688999999999999999999888765
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=8.8e-09 Score=78.65 Aligned_cols=206 Identities=11% Similarity=-0.086 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
+...|.-.|...|+...|..-+++.++.++.+..+|..+...|.+.|+.+.|.+.|++... ..+.+..+.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-------l~p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS-------LAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-------cCCCccchhhhh
Confidence 4566778899999999999999999999988999999999999999999999999999887 457778889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRG-VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG 227 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 227 (403)
...+|..|.+++|...|++....- ..-...+|..+.-+..+.|+++.|.+.|++..+.. +-...+...+.....+.|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 999999999999999999987653 12234588888889999999999999999998874 3345567778888889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhH
Q 041804 228 VDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY 285 (403)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 285 (403)
+-.|..+++.....+. ++..+.-..|+.--..|+.+.+.+.=..+.+. .|...-|
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9999999999888765 78888888888888899988888776666654 4544443
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=5.9e-09 Score=87.74 Aligned_cols=218 Identities=11% Similarity=-0.065 Sum_probs=126.8
Q ss_pred ccHHHHHHhhhhhcccCCCcCC--HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHT--TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 86 (403)
++.+.++..+..+.......|+ ...|..+...+...|+.++|...|++..+.. +.+..+|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4556677777666642223332 3456667777777788888888777777754 34567777777778888888888
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHH
Q 041804 87 MGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE 166 (403)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 166 (403)
+..|++..+..+.+..++..+..++...|++++|.+.+++.... .|+..........+...+++++|...|.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--------DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 88888877777667777777777777778888888777776653 1222111222222344566777777775
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---C--C-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 167 EMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG---I--K-MDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
+..... .|+...+ . ......|+...+ +.+..+.+.- + . .....|..+...+.+.|++++|...|+...+
T Consensus 190 ~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 544322 2222211 1 222334554443 2344443220 0 0 1123455555666666666666666666665
Q ss_pred c
Q 041804 241 M 241 (403)
Q Consensus 241 ~ 241 (403)
.
T Consensus 265 ~ 265 (296)
T PRK11189 265 N 265 (296)
T ss_pred h
Confidence 4
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=9.6e-08 Score=83.46 Aligned_cols=202 Identities=6% Similarity=-0.134 Sum_probs=123.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHH---
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA-TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN--- 106 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 106 (403)
...|..+...+...|+.+.+.+.+....+.....++.. ........+...|++++|.+.+++..+..+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 45666677777777888887777776665442223322 22233445667888999999998888877666655542
Q ss_pred HHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (403)
........+....+.+.+..... ..+........+...+...|++++|.+.+++..+..+. +...+..+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i 157 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAP-------ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHV 157 (355)
T ss_pred HHHhcccccCchhHHHHHhccCc-------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 11111223444555555443111 22333444555666777778888888888887776544 55667777777
Q ss_pred HHHcCChhHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 187 MCKSGKPWKAVKLYKEMKKKGI-KMDV--VAYNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
+...|++++|...+++...... .|+. ..|..+...+...|++++|..+++....
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7778888888887777765421 1222 2344566666777777777777777643
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.25 E-value=1.4e-07 Score=82.46 Aligned_cols=300 Identities=8% Similarity=-0.109 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--c-HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--D-EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
...|..+...+...|+.+.+...+......... + ..........+...|++++|.+.+++.... .|.+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~P~~~~ 78 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-------YPRDLL 78 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcHH
Confidence 456777777788888898888888777665554 2 233333445566789999999999988763 344444
Q ss_pred HHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 041804 144 IYNMILRGWF----KMSWWGKCREFWEEMDKRGVVK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV 218 (403)
Q Consensus 144 ~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 218 (403)
.+.. ...+. ..+..+.+.+.+... ....| .......+...+...|++++|...+++..+.. +.+...+..+
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~l 154 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAV 154 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 4442 22222 244555555555541 11223 33445566678899999999999999999874 4456677888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHhcCcHHHHHHHHHhchhcCC-CCChhhH-HH--HHHh
Q 041804 219 IRAVGVSEGVDFAMRVYREMREMGCQ-PSV--VTCNTVIKLLCENGRVREAYAVLAEMPKKGC-VPDVITY-HC--FFRC 291 (403)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~-~~--l~~~ 291 (403)
...+...|++++|...++...+.... |+. ..|..+...+...|++++|..++++...... .+..... +. ++..
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 88999999999999999998875321 232 3455788899999999999999999764322 1222111 11 1111
Q ss_pred h---CCHHHHHHHHHHHHH---cCC--CCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCC------C--CHHHHHHH
Q 041804 292 L---EKPREILGLFDRMIE---SGI--RPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCS------P--DEFAYNAL 355 (403)
Q Consensus 292 ~---~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l 355 (403)
+ +....+.. ++.+.. ... ............++...|+.+.|..+++.+...... . .....-..
T Consensus 235 ~~~~g~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 235 LELAGHVDVGDR-WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred HHhcCCCChHHH-HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 1 22221211 121211 111 111122235667788999999999999988653211 0 12222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 041804 356 VDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 356 ~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
..++...|++++|.+.+......
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566899999999999987764
No 77
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.4e-09 Score=88.82 Aligned_cols=223 Identities=12% Similarity=0.084 Sum_probs=174.1
Q ss_pred HHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHH
Q 041804 40 ILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIE 119 (403)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (403)
.+.-.|+...|..-|+........ +...|--+...|....+..+-.+.|++..+.++.++.+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 344568888999999988887622 222277777888999999999999999999998899999988888888899999
Q ss_pred HHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 041804 120 AQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKL 199 (403)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 199 (403)
|..=|++... -.+.+...|--+.-+..+.+.++++...|++.++.=+. .+..|+.....+..++++++|.+.
T Consensus 413 A~aDF~Kai~-------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 413 AIADFQKAIS-------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHhh-------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHH
Confidence 9999988876 44667778888888888899999999999998887444 778899999999999999999999
Q ss_pred HHHHHHcCCC-----CChhhH--HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041804 200 YKEMKKKGIK-----MDVVAY--NTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE 272 (403)
Q Consensus 200 ~~~~~~~~~~-----~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (403)
|+..++.... .+..++ ..++.. .-.+++..|..++++..+..++ ....|..|...-.+.|+.++|+++|++
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9988765211 111111 111111 1248899999999999886543 567788899999999999999999987
Q ss_pred ch
Q 041804 273 MP 274 (403)
Q Consensus 273 ~~ 274 (403)
-.
T Consensus 563 sa 564 (606)
T KOG0547|consen 563 SA 564 (606)
T ss_pred HH
Confidence 54
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.1e-07 Score=77.36 Aligned_cols=299 Identities=11% Similarity=0.024 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHHHh--cCChHHHHHHHHHHhhcC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc
Q 041804 65 PNHATFRIMFKRYVT--AHLVNEAMGTFNKLDEFG-LK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN 140 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (403)
|+..+...-+.+++. .++...|..++-.+.... ++ +......+.+++...|+..+|...|++.... .+-
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-------dpy 264 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-------NPD 264 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-------Chh
Confidence 333333333444433 344444444444333322 23 7777888888888888888888888776542 233
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIR 220 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 220 (403)
+........-.+.+.|+.+....+...+....-. ....|-.-.......+++..|+.+-++.++.+ +-+...+-.--.
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~ 342 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGR 342 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccH
Confidence 3333333444455677777777777766554211 33344444455566777888888877777653 223334443444
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHH---HHhh--CCH
Q 041804 221 AVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCF---FRCL--EKP 295 (403)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l---~~~~--~~~ 295 (403)
.+...+++++|.-.|+...... +.+...|.-|+.+|...|.+.+|...-+...+. ...+..+.+.+ +... .--
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 6667788888888888877652 246778888888888888888887666554332 11122333322 1111 124
Q ss_pred HHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041804 296 REILGLFDRMIESGIRPK-MDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEE 374 (403)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 374 (403)
++|..++++-... .|+ ....+.+...|...|..+.++.+++..... .||....+.|.+.+...+.+++|.+.|..
T Consensus 421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6677777766653 333 356677778888999999999999988764 68999999999999999999999999988
Q ss_pred HHHc
Q 041804 375 MFAK 378 (403)
Q Consensus 375 m~~~ 378 (403)
....
T Consensus 497 ALr~ 500 (564)
T KOG1174|consen 497 ALRQ 500 (564)
T ss_pred HHhc
Confidence 7764
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=5.4e-07 Score=79.14 Aligned_cols=203 Identities=14% Similarity=0.020 Sum_probs=142.6
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+..-|+-++|.+....-.+ +...+...|+.+.-.+....++++|++.|......+ +.|...|.-+.-.-++.|+
T Consensus 49 L~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 49 LTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred chhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHh
Confidence 345556888999988887763 345567788888888888899999999999999876 4567788888888889999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHH------HHHHhcC
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL------RGWFKMS 156 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~ 156 (403)
++.....-..+.+..+.....|..+..++.-.|+...|..+++...+.. ...|+...+.... ....+.|
T Consensus 125 ~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~-----~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ-----NTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999888888877788889999999999999999999988887753 2245554444333 2334556
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 041804 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNT 217 (403)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (403)
..+.|.+.+..-...-+. ....-.+-...+.+.+++++|..++..++.. .||..-|..
T Consensus 200 ~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYE 257 (700)
T ss_pred cHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHH
Confidence 666666665544332111 1122233345566777777777777777766 345544433
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6e-08 Score=80.45 Aligned_cols=287 Identities=9% Similarity=-0.049 Sum_probs=198.8
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 041804 44 FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQEL 123 (403)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 123 (403)
.++-..|..++-.+......+-|......+..++...|+.++|+-.|++....++.+........-.+.+.|+.+....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 34444455544444444335667788888899999999999999999998887766555555555556677887777777
Q ss_pred HhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041804 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEM 203 (403)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 203 (403)
...+.. ...-....|..-+.......+++.|+.+-++..+.+.. +...|-.-...+...+++++|.-.|+..
T Consensus 289 ~~~Lf~-------~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 289 MDYLFA-------KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HHHHHh-------hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHH
Confidence 666544 22233444555566666778888998888888876555 5566666667888889999999889888
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCcHHHHHHHHHhchhcCCCCC
Q 041804 204 KKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVI-KLLC-ENGRVREAYAVLAEMPKKGCVPD 281 (403)
Q Consensus 204 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~p~ 281 (403)
.... +-+...|.-|+.+|...|++.+|.-+-+...+. .+-+..+.+.+. ..+. ...--++|.++++.-... .|+
T Consensus 361 q~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~ 436 (564)
T KOG1174|consen 361 QMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPI 436 (564)
T ss_pred Hhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCc
Confidence 7652 456788999999999999998888777666554 233445544442 2222 223357888888876653 454
Q ss_pred hhh----HHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcC
Q 041804 282 VIT----YHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELG 344 (403)
Q Consensus 282 ~~~----~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 344 (403)
..- ..-+...-++.++++.++++.... .||....+.|...+...+.+++|.+.|....+.+
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 322 222233337788888888887763 5788888899999999999999999988887653
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=6.8e-07 Score=77.72 Aligned_cols=358 Identities=13% Similarity=0.050 Sum_probs=199.4
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
..++++++|.+....+.. ..+.+...+..-+-++.+.+.+++|+.+.+.-.... .+..-+-.=..+..+.+..++
T Consensus 23 ~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~---~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL---VINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred ccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh---hcchhhHHHHHHHHHcccHHH
Confidence 456889999999999883 445667778888888899999999986655433211 111111122334447788888
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccc----------------------cccccCc--c
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGF----------------------SGLVEMN--K 141 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------------~~~~~~~--~ 141 (403)
|+..++-.. ..+..+...-.+.+.+.+++++|.++|+.+.++..- ......| +
T Consensus 98 alk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 98 ALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 888877221 125556667777788888888888888877544300 0001111 2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CC-----CcH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 041804 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKRG--------VV-----KDL-HSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207 (403)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 207 (403)
...+......+...|++.+|+++++...+.+ .. -.. ..-..|.-.+...|+.++|..+|...++..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 2223334455677899999999998873211 11 000 122334556778899999999999988764
Q ss_pred CCCChhhH----HHHH-----------------------------------------------HHHhhcC----------
Q 041804 208 IKMDVVAY----NTVI-----------------------------------------------RAVGVSE---------- 226 (403)
Q Consensus 208 ~~~~~~~~----~~ll-----------------------------------------------~~~~~~~---------- 226 (403)
++|.... |.|+ ..|...+
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 2333111 1111 1110000
Q ss_pred ----------------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH--------hchhc
Q 041804 227 ----------------------GVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLA--------EMPKK 276 (403)
Q Consensus 227 ----------------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~ 276 (403)
....+..++...-+....-...+.-.++......|+++.|.+++. .+.+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 011122222222222111123344455566677888888888888 55555
Q ss_pred CCCCChhhHHHHH-HhhCCHHHHHHHHHHHHHc--CCCCchh----hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCH
Q 041804 277 GCVPDVITYHCFF-RCLEKPREILGLFDRMIES--GIRPKMD----TYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDE 349 (403)
Q Consensus 277 ~~~p~~~~~~~l~-~~~~~~~~a~~~~~~~~~~--~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 349 (403)
+..|..+.+...+ ...+..+.|..++...+.. ...+... ++.-+...-.+.|+-++|..+++++.+.. ++|.
T Consensus 414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~ 492 (652)
T KOG2376|consen 414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDT 492 (652)
T ss_pred ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchH
Confidence 5555544333222 2222222233333333210 0011112 23333334456788888888888888754 6788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 041804 350 FAYNALVDALIDKGMLDMARKYDEE 374 (403)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~a~~~~~~ 374 (403)
.+...++.+|++. +.+.|..+-+.
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 8888888888865 45666655443
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=1e-06 Score=79.01 Aligned_cols=359 Identities=11% Similarity=0.004 Sum_probs=214.1
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-hcCChHH
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYV-TAHLVNE 85 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 85 (403)
+.|+++.+.+.|+... .+.-...+.|+.+...|...|.-..|..+++.-......+++...+-..-..|. +.+..++
T Consensus 335 ~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 3466666777776665 333444566677777777777777777766655443311223333333333333 3455666
Q ss_pred HHHHHHHHhhc--CC---CcHHHHHHHHHHHHh-----------cCCHHHHHHHHhcccccccccccccCcchHHHHHHH
Q 041804 86 AMGTFNKLDEF--GL---KDEVSYCNLVDALCE-----------YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149 (403)
Q Consensus 86 a~~~~~~~~~~--~~---~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (403)
++..-.+.... +. -.+..+..+.-+|.. .....++.+.+++..+. .+.|..+...+.
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~-------d~~dp~~if~la 485 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF-------DPTDPLVIFYLA 485 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc-------CCCCchHHHHHH
Confidence 66655555541 11 144455555555442 11234455555655542 233444455556
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC------------------C
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-GIK------------------M 210 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------------------~ 210 (403)
--|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+...+. |.. -
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 667788899999999999998866668889999999999999999999998876654 210 0
Q ss_pred ChhhHHHHHHHHhhc-----------------------CCHHHHHHHHHHHH--------HcC---------CC--CC--
Q 041804 211 DVVAYNTVIRAVGVS-----------------------EGVDFAMRVYREMR--------EMG---------CQ--PS-- 246 (403)
Q Consensus 211 ~~~~~~~ll~~~~~~-----------------------~~~~~a~~~~~~~~--------~~~---------~~--~~-- 246 (403)
...|+..++..+-.. ++..++.+..+.+. ..| .. |+
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 011222222222100 01111111111110 001 00 11
Q ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCC-hhhHH---HHHHhhCCHHHHHHHHHHHHHcCCCCchhhHH
Q 041804 247 ----VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPD-VITYH---CFFRCLEKPREILGLFDRMIESGIRPKMDTYV 318 (403)
Q Consensus 247 ----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~---~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (403)
...|......+.+.+..++|...+.+.... .|- ...|. .+...-+..++|.+.|.......+. ++....
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~ 722 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHH
Confidence 112334455666677777777666665543 121 11111 1122236678888888887765433 456788
Q ss_pred HHHHHHHhcCCcchHHH--HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 319 MLLRKFGRWGFLRPVFV--VWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 319 ~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
++..++.+.|+..-|.. ++..+.+.+ +.+...|-.+...+.+.|+.++|.+.|.....-
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 89999999999888888 999999876 678999999999999999999999999987763
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=6.7e-07 Score=72.98 Aligned_cols=179 Identities=6% Similarity=-0.039 Sum_probs=103.6
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
++++..|+.+++.-.. .+-.....+--.+..++.+.|++++|...+..+.+.. .|+...+-.|.-++.-.|.+.+|.
T Consensus 35 ~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHH
Confidence 4677888888776552 2222222333346677778899999999888877754 467777777777777788888887
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHH
Q 041804 88 GTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEE 167 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 167 (403)
++-.+..+ ++..-..++....+.++-++-..+-..+... ..---+|.........+++|.+++.+
T Consensus 112 ~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----------~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 112 SIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----------LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----------HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 76654432 4444444555555556555544443332221 11123344444444556777777777
Q ss_pred HHhCCCCCcHHHHHHHH-HHHHHcCChhHHHHHHHHHHHc
Q 041804 168 MDKRGVVKDLHSYSIYM-DIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 168 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
....+ |.-...|..+ -+|.+..-++-+.++++...+.
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 76553 2333333333 3455555566666666665554
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=3.2e-06 Score=74.45 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC----------CC
Q 041804 178 HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD---VVAYNTVIRAVGVSEGVDFAMRVYREMREMG----------CQ 244 (403)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~ 244 (403)
..|..+.+.|-..|+.+.|..+|++..+...+-- ..+|......=.+..+++.|+++++.....- ..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4678888999999999999999999887643321 2355555555567788999999888765321 11
Q ss_pred C-------CHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCC-CC-hhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCch-
Q 041804 245 P-------SVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCV-PD-VITYHCFFRCLEKPREILGLFDRMIESGIRPKM- 314 (403)
Q Consensus 245 ~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~- 314 (403)
| +...|+..++.--..|-++....+++++.+..+. |. ...|..++.-..-++++.+.|++=+..-..|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 3345666677667788999999999999876543 32 234445555555577888888766554334444
Q ss_pred hhHHHHHHHHHh---cCCcchHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 041804 315 DTYVMLLRKFGR---WGFLRPVFVVWKKMEELGCSPDEFA--YNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELG 389 (403)
Q Consensus 315 ~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 389 (403)
..|+..+.-+.+ ...++.|..+|++..+ |.+|...- |-.....=-+.|....|+.++++.. .++.+.....+-
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~my 625 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMY 625 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHH
Confidence 467766665543 2368999999999998 66654322 2222333345788888999998854 345555544443
Q ss_pred HH
Q 041804 390 TK 391 (403)
Q Consensus 390 ~~ 391 (403)
..
T Consensus 626 ni 627 (835)
T KOG2047|consen 626 NI 627 (835)
T ss_pred HH
Confidence 33
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=3.3e-08 Score=82.03 Aligned_cols=245 Identities=11% Similarity=0.054 Sum_probs=134.9
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
.|++..++.-.+ ... .....+......+.+++...|+++.+ +.++.... .|.......+...+...++-+.++
T Consensus 14 ~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~--~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS--SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp TT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS--SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred hhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC--ChhHHHHHHHHHHHhCccchHHHH
Confidence 477777776555 221 11222344555667777777776643 34443332 455555555554444434455555
Q ss_pred HHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 88 GTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 88 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
.-+++....... ++.........+...|++++|+++++.. .+.......+..|.+.++++.|.+.+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 555544433322 2223333334455567777777665432 23445566677777777888888777
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 166 EEMDKRGVVKDLHSYSIYMDIMCK----SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
+.|.+.+ +..+...+..++.. ...+++|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+..+.
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777653 22334444444433 23577777777776554 4566677777777777777777777777776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCcH-HHHHHHHHhchhc
Q 041804 242 GCQPSVVTCNTVIKLLCENGRV-REAYAVLAEMPKK 276 (403)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 276 (403)
+.. ++.+...++-+....|+. +.+.+.+.++...
T Consensus 231 ~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 DPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 322 445555566665666665 5566777776654
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=5.1e-07 Score=73.64 Aligned_cols=364 Identities=10% Similarity=0.021 Sum_probs=184.7
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCC----------CCCHH---H--
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSS----------IPNHA---T-- 69 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~---~-- 69 (403)
+..-|++++|+..+..+.. .-.++...+-.|.-++.-.|.+.+|..+-....+..-. -.|.. +
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh 144 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFH 144 (557)
T ss_pred HHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3456999999999998874 34566666666766666778888888776665432100 00000 0
Q ss_pred ---------HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc
Q 041804 70 ---------FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN 140 (403)
Q Consensus 70 ---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (403)
--+|.......-.+.+|+.+|.+....++.-...-..+.-+|.+..-++-+.+++.-... ..+.
T Consensus 145 ~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~-------q~pd 217 (557)
T KOG3785|consen 145 SSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR-------QFPD 217 (557)
T ss_pred HHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH-------hCCC
Confidence 011222222333456677777766654433222222233455566666666666555544 3344
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHH--------------HHHhCCC------------CC-----cHHHHHHHHHHHHH
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWE--------------EMDKRGV------------VK-----DLHSYSIYMDIMCK 189 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~--------------~~~~~~~------------~~-----~~~~~~~l~~~~~~ 189 (403)
++.+.|..+....+.=+-..|++-.. .+.+.+. -| -+.+-..|+-.|.+
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN 297 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence 44444444433333211111111111 1111110 01 11223334445667
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH-----hhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCcH
Q 041804 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV-----GVSEGVDFAMRVYREMREMGCQPSV-VTCNTVIKLLCENGRV 263 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 263 (403)
+++.++|..+.+++.- ..|-......+..+- .......-|.+.|+..-+.+..-|. ..-.++...+.-..++
T Consensus 298 q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 298 QNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 7777777776655431 122222222222211 1122244455555444433332221 2223344444445567
Q ss_pred HHHHHHHHhchhcCCCCChhhHHHHH--HhhCCHHHHHHHHHHHHHcCCCCchhhHHH-HHHHHHhcCCcchHHHHHHHH
Q 041804 264 REAYAVLAEMPKKGCVPDVITYHCFF--RCLEKPREILGLFDRMIESGIRPKMDTYVM-LLRKFGRWGFLRPVFVVWKKM 340 (403)
Q Consensus 264 ~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~ 340 (403)
++.+..+..+..--..-|...+|..- .+.+...+|.++|-.+....++ |..+|.+ |.++|.+.+.++.|++++-++
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 77777776666543344555555332 2347778888888777655555 5555554 446778888888887765443
Q ss_pred HhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 041804 341 EELGCSPDEFAY-NALVDALIDKGMLDMARKYDEEMFAKGLSAKPR 385 (403)
Q Consensus 341 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 385 (403)
. -+.+..+. ..+..-|.+.+.+--|-+.|+.+... .|+|.
T Consensus 455 ~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pE 495 (557)
T KOG3785|consen 455 N---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPE 495 (557)
T ss_pred C---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcc
Confidence 3 22233333 33345677788777777777777653 34444
No 87
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=4.2e-07 Score=76.52 Aligned_cols=216 Identities=9% Similarity=-0.006 Sum_probs=164.6
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH-LVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
.++..+-.++...+..++|+.+.+.+.+.. +-+..+|+....++...| ++++++..++++.+..+.+..+|+....+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 355566667778889999999999999865 234557877777777777 67999999999999998888888877777
Q ss_pred HHhcCCH--HHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 111 LCEYKHV--IEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 111 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
+.+.+.. +++...++++.. ..+.|..+|+.....+...|+++++++.++++.+.++. |..+|+.....+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~-------~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~ 187 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILS-------LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT 187 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence 7676653 667777777776 55788899999999999999999999999999998877 7788888777666
Q ss_pred Hc---CCh----hHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041804 189 KS---GKP----WKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS----EGVDFAMRVYREMREMGCQPSVVTCNTVIKLL 257 (403)
Q Consensus 189 ~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 257 (403)
+. |.. ++.++...+++... +-|...|+.+...+... ++..+|...+.+..+.++ .+......|+..|
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~ 265 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLL 265 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHH
Confidence 54 222 45677776777663 44677888888777663 344568788777766543 3667777788888
Q ss_pred Hh
Q 041804 258 CE 259 (403)
Q Consensus 258 ~~ 259 (403)
+.
T Consensus 266 ~~ 267 (320)
T PLN02789 266 CE 267 (320)
T ss_pred Hh
Confidence 75
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=1.8e-08 Score=83.65 Aligned_cols=246 Identities=11% Similarity=0.064 Sum_probs=156.3
Q ss_pred HHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (403)
+.-.|++..++.-.+ .... ...........+.+++...|+++.+. .++.... .|.......+...+...
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~------~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSF------SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTS------TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTS
T ss_pred HHHhhhHHHHHHHhh-ccCC------CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCc
Confidence 334677777765444 1111 22334455667778888888876543 3443333 56666666665555443
Q ss_pred CChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 041804 191 GKPWKAVKLYKEMKKKGIKM-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAV 269 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (403)
++-+.++.-+++.......+ +..........+...|+++.|++++... .+.......+..|.+.++++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555554443333232 2233333334566788999998887642 3667777788999999999999999
Q ss_pred HHhchhcCCCCChhhHHHHHHhh-------CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 041804 270 LAEMPKKGCVPDVITYHCFFRCL-------EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEE 342 (403)
Q Consensus 270 ~~~~~~~~~~p~~~~~~~l~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 342 (403)
++.|.+. ..|. +...+..++ .+.++|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..+
T Consensus 154 l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9998864 3343 333333322 4578999999997654 557888899999999999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 041804 343 LGCSPDEFAYNALVDALIDKGML-DMARKYDEEMFAK 378 (403)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 378 (403)
.+ +-++.+...++.+....|+. +.+.+++.++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 54 45677888888888888888 6677888888764
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.8e-06 Score=71.86 Aligned_cols=361 Identities=12% Similarity=-0.008 Sum_probs=195.7
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCC
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVTAHL 82 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 82 (403)
..+..|+++.|+..|..... . .++|...|..-..+|++.|++++|++=-.+-.+.. |+ ...|+-...++.-.|+
T Consensus 11 aa~s~~d~~~ai~~~t~ai~-l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIM-L-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred hhcccccHHHHHHHHHHHHc-c-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhccc
Confidence 35678999999999988874 2 35578889999999999999999988777777654 55 5689999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH-------------------------HHHHHHhcccccccccccc
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI-------------------------EAQELCFGENKNVGFSGLV 137 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------~a~~~~~~~~~~~~~~~~~ 137 (403)
+++|+.-|.+-++..+.+...+..+..++....... .-..++.........- +
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l--~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL--K 163 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh--h
Confidence 999999999999988878888888887772210000 0000011111000000 0
Q ss_pred cCcchHHHHHHHHHHHhc-----------CC--------hh----HHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHcCCh
Q 041804 138 EMNKTKIYNMILRGWFKM-----------SW--------WG----KCREFWEEMDK-RGVVKDLHSYSIYMDIMCKSGKP 193 (403)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~-----------~~--------~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 193 (403)
...+ ...++.+.... |. +. ........+.+ .....-..-...+.++..+..++
T Consensus 164 ~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 164 LYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred cccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 0000 00011111000 00 00 00000000000 00000112234455555556666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCcHHHH
Q 041804 194 WKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCN-------TVIKLLCENGRVREA 266 (403)
Q Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~a 266 (403)
..+++.+....+.. -+..-++....+|...|.+..+...-....+.|-. ...-|+ .+..+|.+.++.+.+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 66666666555543 23333444444555555555555554444444322 111111 122344445556666
Q ss_pred HHHHHhchhcCCCCChhhHHHH--------------------------HHh--hCCHHHHHHHHHHHHHcCCCCchhhHH
Q 041804 267 YAVLAEMPKKGCVPDVITYHCF--------------------------FRC--LEKPREILGLFDRMIESGIRPKMDTYV 318 (403)
Q Consensus 267 ~~~~~~~~~~~~~p~~~~~~~l--------------------------~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (403)
+..|.+.......|+..+-... ..+ .+++..|+..|.+++..... |...|.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYS 396 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHH
Confidence 6666555443333332211110 001 14566777777777766533 667777
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 319 MLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
.-.-+|.+.|.+..|+.=.+...+.. ++....|..=..++....+++.|.+.|++.++.+
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777777777777766666653 3334444444455555666777777777666543
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=5.8e-06 Score=67.40 Aligned_cols=208 Identities=11% Similarity=-0.015 Sum_probs=134.5
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH-ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
.++.-...+...+...|++..|+.-|....+-+ |+. .++-.-...|...|+..-|+.=+.+..+..+.-..+..--
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d---p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD---PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 345556677788888899999999998888754 433 3444455678888888888888888888766533344444
Q ss_pred HHHHHhcCCHHHHHHHHhcccccccccccccC------c--chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH
Q 041804 108 VDALCEYKHVIEAQELCFGENKNVGFSGLVEM------N--KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS 179 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 179 (403)
...+.+.|.++.|..=|+....+.+..+.... + ........+..+.-.|+...|+.....+.+..+= |...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 55677889999999888887776422211100 0 0111223344555667777777777777765433 6666
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
|..-..+|...|++..|+.=++..-+.. ..+..++--+-..+...|+.+.++...++..+.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 6666777777777777776666555442 224444445555666777777777777777664
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.98 E-value=4.6e-06 Score=82.47 Aligned_cols=337 Identities=10% Similarity=-0.039 Sum_probs=208.7
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-------C--cHHHHHHHH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL-------K--DEVSYCNLV 108 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~--~~~~~~~l~ 108 (403)
.......|++..+..+++.+.... ...+..........+...|+++++..++......-. + .......+.
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 344556778888777777663221 111222233445556678999999999887654311 1 112223344
Q ss_pred HHHHhcCCHHHHHHHHhcccccccccccccCc-chHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----C-CCcHHHHHH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEMN-KTKIYNMILRGWFKMSWWGKCREFWEEMDKRG----V-VKDLHSYSI 182 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~ 182 (403)
..+...|++++|...+++....... .... .....+.+...+...|++++|...+++..... . .+...++..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 5566799999999998876542110 1111 22345667777888999999999998876421 1 112234556
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC--CCC--CHHHHH
Q 041804 183 YMDIMCKSGKPWKAVKLYKEMKKK----GIK--M-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMG--CQP--SVVTCN 251 (403)
Q Consensus 183 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~ 251 (403)
+...+...|++++|...+++.... +.. + ....+..+...+...|+++.|...+.+..... ..+ ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 677788999999999998886553 211 1 12334455556677899999999998876531 112 233445
Q ss_pred HHHHHHHhcCcHHHHHHHHHhchhcCC-CCChhhHH--------HHHHhhCCHHHHHHHHHHHHHcCCCCc---hhhHHH
Q 041804 252 TVIKLLCENGRVREAYAVLAEMPKKGC-VPDVITYH--------CFFRCLEKPREILGLFDRMIESGIRPK---MDTYVM 319 (403)
Q Consensus 252 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~--------~l~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 319 (403)
.+...+...|+.+.|.+.+........ ......+. ......++.+.+..++........... ...+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 566778889999999999888753210 01111110 111123667777777665443211111 111345
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 320 LLRKFGRWGFLRPVFVVWKKMEEL----GCSPD-EFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
+..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667788999999999999988653 32222 345667778889999999999999998875
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3.4e-08 Score=85.33 Aligned_cols=230 Identities=13% Similarity=0.007 Sum_probs=171.5
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
...+.+.|++.+|.-.|+.....+ +-+..+|..|.......++-..|+..+++..+.++.+..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 345678999999999999998876 456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccC--cchHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHcCChh
Q 041804 118 IEAQELCFGENKNVGFSGLVEM--NKTKIYNMILRGWFKMSWWGKCREFWEEMDK-RGVVKDLHSYSIYMDIMCKSGKPW 194 (403)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 194 (403)
..|.+.++.............. ++...-+. ..+.....+....++|-++.. .+..+|...+..|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999887543200000000 00000000 111112223444555555544 444467778888888888999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 195 KAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS-VVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
+|.+.|+..+... +-|...||-|-..++...+..+|...|.++++. .|+ +.+...|.-+|...|.+++|.+.|-+.
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999998863 346678999999999999999999999999986 454 334455667888999999999888765
Q ss_pred h
Q 041804 274 P 274 (403)
Q Consensus 274 ~ 274 (403)
.
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
No 93
>PLN02789 farnesyltranstransferase
Probab=98.97 E-value=3.3e-07 Score=77.14 Aligned_cols=209 Identities=8% Similarity=-0.037 Sum_probs=158.7
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccC-ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFF-EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (403)
.++...++.++|+...+.+... .+-+..+|+..-.++...| ++++++..++.+.+.. +.+..+|+.....+.+.|
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcC
Confidence 3455567888888888887741 2334557777777777777 6899999999999876 456678887776677777
Q ss_pred Ch--HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc---C
Q 041804 82 LV--NEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM---S 156 (403)
Q Consensus 82 ~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 156 (403)
.. ++++.+++++.+.++.+..+|+....++...|+++++++.+.++.+ ..+.|..+|+.......+. |
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~-------~d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE-------EDVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HCCCchhHHHHHHHHHHhccccc
Confidence 63 6789999999999988999999999999999999999999999887 4466777888777666554 2
Q ss_pred Ch----hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 041804 157 WW----GKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS----GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGV 224 (403)
Q Consensus 157 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 224 (403)
.. ++..++..++....+. |...|+-+...+... ++..+|...+.+....+ +.+......|+..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 4677777788877766 888999888888773 34466888888776653 3356677777777764
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=9.7e-07 Score=70.36 Aligned_cols=287 Identities=9% Similarity=0.014 Sum_probs=194.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHH-HH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYN-MI 148 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 148 (403)
+...+..+.+..+++.|++++..-.+..+.+....+.|..+|....++..|-..++++-.. .|...-|. .-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 4566777788899999999999999988889999999999999999999999999888663 34333333 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI--MCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSE 226 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 226 (403)
...+.+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..++++....| +..+.+.......+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 46677889999999999998764 232222222222 234678888888887766433 3444444444556899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC-------------Chh--------hH
Q 041804 227 GVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP-------------DVI--------TY 285 (403)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-------------~~~--------~~ 285 (403)
+.+.|.+-|+...+.+---....||..+. ..+.|+...|.+...++.++|++- |.. .-
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999999988744445667776554 457789999999999998876542 211 11
Q ss_pred HHHHHhh----------CCHHHHHHHHHHHH-HcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHH
Q 041804 286 HCFFRCL----------EKPREILGLFDRMI-ESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNA 354 (403)
Q Consensus 286 ~~l~~~~----------~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (403)
+.++.++ ++.+.|.+-+..|. +.....|+.|...+.-.= ..+++.....-+.-+.... +-...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 2333333 34455555555554 122334666655443221 2345555555555555543 345789999
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 041804 355 LVDALIDKGMLDMARKYDE 373 (403)
Q Consensus 355 l~~~~~~~g~~~~a~~~~~ 373 (403)
++-.|++..-++-|-.++-
T Consensus 316 lLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHhhhHHHhHHHHHHh
Confidence 9999999998888877664
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=1.2e-06 Score=83.55 Aligned_cols=227 Identities=14% Similarity=0.104 Sum_probs=135.3
Q ss_pred CcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhh
Q 041804 139 MNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR-GVVK---DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVA 214 (403)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (403)
|.+...|-..|......++.++|.+++++.+.. ++.- -...|.++++.-..-|.-+...++|+++.+. .-...+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 444555666666666666666666666555432 1110 1124555555555555555666666666654 112345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCC------hhhHHHH
Q 041804 215 YNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPD------VITYHCF 288 (403)
Q Consensus 215 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l 288 (403)
|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+..+-+.|..++.+..+. .|- ..-+..|
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 566666666666666666666666654 2235556666666666666666666666665543 222 1112223
Q ss_pred HHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHH
Q 041804 289 FRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPD--EFAYNALVDALIDKGMLD 366 (403)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 366 (403)
.-.+|+.+.+..+|+......++ -...|+.+++.-.++|+.+.++.+|++....++.|- ...|...+..=-+.|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 33456666666677766665333 456788889888899999999999999988877664 356677777666677765
Q ss_pred HHHHH
Q 041804 367 MARKY 371 (403)
Q Consensus 367 ~a~~~ 371 (403)
.+..+
T Consensus 1689 ~vE~V 1693 (1710)
T KOG1070|consen 1689 NVEYV 1693 (1710)
T ss_pred hHHHH
Confidence 44443
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=8.8e-06 Score=66.37 Aligned_cols=286 Identities=8% Similarity=-0.037 Sum_probs=194.2
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHH-HHHHHHHHHhcCChH
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT-FRIMFKRYVTAHLVN 84 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 84 (403)
..+|++..|+.-|+... .+.+.+-.++..-...|...|+...|+.=+.+..+. +||... .-.-...+.+.|.++
T Consensus 49 la~~Q~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAV--EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHhhhHHHHHHHHHHHH--cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccHH
Confidence 34688999999998887 344445556666778899999999999999999984 588754 334456788999999
Q ss_pred HHHHHHHHHhhcCCC---cHHH------------HHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHH
Q 041804 85 EAMGTFNKLDEFGLK---DEVS------------YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~---~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (403)
+|..=|+.+....+. .... ....+..+...|+...|......+.+ ..+-+...+..-.
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-------i~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-------IQPWDASLRQARA 196 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-------cCcchhHHHHHHH
Confidence 999999999988763 2222 22334556678899999999888887 4466888889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH-----------
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV----------- 218 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 218 (403)
.+|...|++..|+.=++...+..-. ++.++--+-..+...|+.+.++...++.++. .||...+-..
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999888777766555 6777777888889999999999999888875 5665432211
Q ss_pred --HHHHhhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCC-hhhHHHHHHhh
Q 041804 219 --IRAVGVSEGVDFAMRVYREMREMGCQPSV---VTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPD-VITYHCFFRCL 292 (403)
Q Consensus 219 --l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 292 (403)
+......+++..+..-.+...+....... ..+..+-.++...+++.+|+....+..+. .|| ..++.--..++
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence 11223345555666666655554332122 22334445556666777777776666653 333 33332222222
Q ss_pred ---CCHHHHHHHHHHHHHc
Q 041804 293 ---EKPREILGLFDRMIES 308 (403)
Q Consensus 293 ---~~~~~a~~~~~~~~~~ 308 (403)
..++.|+.-|+...+.
T Consensus 352 l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 2345555555555543
No 97
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=2.9e-05 Score=70.12 Aligned_cols=212 Identities=12% Similarity=0.003 Sum_probs=155.8
Q ss_pred CCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCcHH
Q 041804 25 CHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG--LKDEV 102 (403)
Q Consensus 25 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 102 (403)
..+..++..|..+.-++..+|+++.+.+.|++...-. ......|+.+...|...|....|..+++.-.... +.++.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 4456688999999999999999999999999877642 3567789999999999999999999999877766 44677
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc-----------CChhHHHHHHHHHHh
Q 041804 103 SYCNLVDALCE-YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM-----------SWWGKCREFWEEMDK 170 (403)
Q Consensus 103 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~ 170 (403)
.+-..-+.|.+ .+..++++....++....+.. ........|..+.-+|... ....++.+.+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~--~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ--RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 66666666664 666777777666655522111 1122333445555444322 124567788888877
Q ss_pred CCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 171 RGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
.+.. |....-.+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++..|+.+.+...+.
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 7654 333333344457788899999999999999866778899999999999999999999999877654
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.2e-07 Score=81.96 Aligned_cols=255 Identities=10% Similarity=-0.016 Sum_probs=192.3
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+.+.|+..+|.-.|+...++ .+-+..+|-.|...-...++-..|+..+++..+.. +.|..+.-.|.-.|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhh
Confidence 3466789999999999998853 35568899999999999999999999999999976 4567889999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHH-------HHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCN-------LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
-..|+.+++......++-...-.. .-........+....++|-++.... +..++..+...|.-.|.-.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~-----~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL-----PTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC-----CCCCChhHHhhhHHHHhcc
Confidence 999999999887655431100000 0012222334455566666555432 4457888899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhhcCCHHHHHHH
Q 041804 156 SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV-VAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
|++++|.+.|+..+...+. |...||-|.-.++...+..+|+..|.+.++. +|+- .+.-.|.-+|...|.+.+|.+.
T Consensus 444 ~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9999999999999998777 8899999999999999999999999999986 5553 3555677788899999999998
Q ss_pred HHHHHHcC---------CCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 041804 235 YREMREMG---------CQPSVVTCNTVIKLLCENGRVREAYAV 269 (403)
Q Consensus 235 ~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (403)
|-..+... ..++...|.+|=.++.-.++.+.+...
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 87765321 112334666666666666666544443
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=2.8e-07 Score=75.27 Aligned_cols=188 Identities=10% Similarity=-0.061 Sum_probs=130.1
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHH---HH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV---SY 104 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 104 (403)
.....+..+...+...|++++|...|+++....+..|. ..++..+..++...|++++|+..++++.+..+.+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45677888889999999999999999999886511121 246788899999999999999999999988876443 56
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 041804 105 CNLVDALCEY--------KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 105 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 176 (403)
..+..++... |+.++|.+.++++... .+.+...+..+... ..+... -
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~~--------------~~~~~~----~ 165 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-------YPNSEYAPDAKKRM--------------DYLRNR----L 165 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-------CCCChhHHHHHHHH--------------HHHHHH----H
Confidence 6666666654 7788899988887763 22222222222111 000000 0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 177 LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI--KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
......+...|.+.|++++|...++...+... +.....+..+..++.+.|+.++|..+++.+...
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01122455678888888888888888877621 223467778888888888988888888887765
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=4.6e-07 Score=70.98 Aligned_cols=158 Identities=9% Similarity=-0.038 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHH
Q 041804 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILR 150 (403)
Q Consensus 71 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (403)
..+-..+...|+-+....+........+.+.......+....+.|++..|...+++... ..++|..+|+.+.-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-------l~p~d~~~~~~lga 142 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-------LAPTDWEAWNLLGA 142 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-------cCCCChhhhhHHHH
Confidence 44455555566666666655555544444555666666666666666666666666655 44666666666666
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH
Q 041804 151 GWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDF 230 (403)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 230 (403)
+|.+.|+++.|..-|.+..+..+. +...++.+.-.|.-.|+.+.|..++......+ .-|..+-..+.......|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 666666666666666666555444 44455666666666666666666666665553 2245555556666666666666
Q ss_pred HHHHHHH
Q 041804 231 AMRVYRE 237 (403)
Q Consensus 231 a~~~~~~ 237 (403)
|..+...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 6655443
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=1.8e-07 Score=83.28 Aligned_cols=222 Identities=13% Similarity=0.019 Sum_probs=181.6
Q ss_pred CcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHH
Q 041804 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN 106 (403)
Q Consensus 27 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 106 (403)
.+|--..--.+...+.+.|-..+|..+|+++. .|.-++.+|...|+..+|..+..+..+ ..+++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence 44545555677888999999999999998875 467789999999999999999998888 5569999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (403)
+.+.....--+++|.++.+.... .+-..+.......++++++.+.|+.-.+.++- ...+|-.+..+
T Consensus 463 LGDv~~d~s~yEkawElsn~~sa-------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ 528 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISA-------------RAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCA 528 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhH-------------HHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHH
Confidence 99999888889999998765433 22233333344578999999999988776544 56788889999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 041804 187 MCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREA 266 (403)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 266 (403)
..+.++++.|.+.|....... +-+...|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+......|.+++|
T Consensus 529 ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 999999999999999888762 3345689999999999999999999999999987 44667777777788899999999
Q ss_pred HHHHHhchh
Q 041804 267 YAVLAEMPK 275 (403)
Q Consensus 267 ~~~~~~~~~ 275 (403)
++.+.++..
T Consensus 607 ~~A~~rll~ 615 (777)
T KOG1128|consen 607 IKAYHRLLD 615 (777)
T ss_pred HHHHHHHHH
Confidence 999998764
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.2e-05 Score=69.39 Aligned_cols=328 Identities=12% Similarity=0.059 Sum_probs=209.9
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
-.+.+..|+++.|+..|-+..... ++|...|..-..+|...|++++|++=-.+-.+..+.=+..|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 345678899999999999988876 578899999999999999999999988888888877788999999999999999
Q ss_pred HHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHH---HHHHHHHHhCC---CCCcHHHHHHHHHHHHHc-
Q 041804 118 IEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKC---REFWEEMDKRG---VVKDLHSYSIYMDIMCKS- 190 (403)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~- 190 (403)
++|...|.+-.. ..+.|...++-+..++......... -.++..+...- .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~-------~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 87 EEAILAYSEGLE-------KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHHHhh-------cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 999999998777 3466777777777777211000000 01111111100 000112233333322111
Q ss_pred ------CChhHHHHHHHHHH--------HcC-------CCC----------------------ChhhHHHHHHHHhhcCC
Q 041804 191 ------GKPWKAVKLYKEMK--------KKG-------IKM----------------------DVVAYNTVIRAVGVSEG 227 (403)
Q Consensus 191 ------~~~~~a~~~~~~~~--------~~~-------~~~----------------------~~~~~~~ll~~~~~~~~ 227 (403)
.+.+...+..-.+. ..+ ..| -..-...+.++..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 01111111111110 001 111 11234567788888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh----------CCHHH
Q 041804 228 VDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL----------EKPRE 297 (403)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----------~~~~~ 297 (403)
++.+.+-+....+.. -+..-++....+|...|........-....+.|-. ....|+.+-.++ ++.+.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 999999999988864 46666677778888888877777666655544321 122233222222 22344
Q ss_pred HHHHHHHHHHcCCCCchhh-------------------------HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHH
Q 041804 298 ILGLFDRMIESGIRPKMDT-------------------------YVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAY 352 (403)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 352 (403)
++..|.+.....-.|+..+ .-.-...+.+.|++..|+..+.++++.. +-|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 5555555444333332211 1112345788999999999999999876 6688999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 353 NALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 353 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
..-.-+|.+.|.+..|+.=.+..++.
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999998877766654
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.89 E-value=4.5e-06 Score=78.59 Aligned_cols=260 Identities=8% Similarity=0.049 Sum_probs=171.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
+.+...|..|+..+...+++++|.++.+...+..+.....|-.+...+.+.++..++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--------------------
Confidence 445677888888888888888888888877777766666666655566676665554433
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 041804 144 IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVG 223 (403)
Q Consensus 144 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 223 (403)
.++.......++..+.-+...|.+.+ -+..++-.+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|+
T Consensus 88 ---~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~a 161 (906)
T PRK14720 88 ---NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYE 161 (906)
T ss_pred ---hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 22333333344444444444555432 234477788888888899999999999988886 557778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHH
Q 041804 224 VSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFD 303 (403)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~ 303 (403)
.. ++++|..++.++... |...+++..+.++|.++... .|+. .+.-..+.+
T Consensus 162 e~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d------------~d~f~~i~~ 211 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDD------------FDFFLRIER 211 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Cccc------------chHHHHHHH
Confidence 88 888888888877764 56677888888888888875 2332 222333334
Q ss_pred HHHHc-CCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC
Q 041804 304 RMIES-GIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA-KGLS 381 (403)
Q Consensus 304 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~ 381 (403)
.+... |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|. +.+.. ...|++.++ .|+.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~ 287 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG 287 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc
Confidence 44432 333345566677778888888999999999998875 446667777777776 33333 333444333 3554
Q ss_pred CC
Q 041804 382 AK 383 (403)
Q Consensus 382 p~ 383 (403)
-.
T Consensus 288 ~~ 289 (906)
T PRK14720 288 NN 289 (906)
T ss_pred cC
Confidence 44
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=5.6e-07 Score=73.56 Aligned_cols=189 Identities=11% Similarity=-0.098 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcH---HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc
Q 041804 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE---VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN 140 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (403)
......+..+...+...|+++.|...|+++....+.++ .++..+..++...|++++|...++++.... +..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~ 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNHP 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCC
Confidence 35667788888999999999999999999998876643 577888999999999999999999987642 1111
Q ss_pred c-hHHHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 041804 141 K-TKIYNMILRGWFKM--------SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211 (403)
Q Consensus 141 ~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (403)
. ..++..+..++... |++++|.+.|+.+.+..+. +...+..+..... ... ...
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~------- 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA------- 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH-------
Confidence 1 12455555566554 7788999999998877544 3333322221111 000 000
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGC--QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 212 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
.....+...+.+.|+++.|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 167 -~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 -GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678899999999999999988732 123578889999999999999999999988765
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=3.2e-09 Score=56.19 Aligned_cols=32 Identities=41% Similarity=0.717 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041804 344 GCSPDEFAYNALVDALIDKGMLDMARKYDEEM 375 (403)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 375 (403)
|+.||..+|+++|.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=3.9e-07 Score=71.46 Aligned_cols=156 Identities=7% Similarity=0.037 Sum_probs=117.1
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
+-.|...|+++.+....+.+.. |. ..+...++.++++..++...+..+.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 3457788888877555533322 11 0122366678888888888888888889999999999999999
Q ss_pred HHHHHHHhcccccccccccccCcchHHHHHHHHH-HHhcCC--hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChh
Q 041804 118 IEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG-WFKMSW--WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPW 194 (403)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (403)
++|...+++... ..+.+..++..+..+ +...|+ .++|.+++++..+.++. +..++..+...+...|+++
T Consensus 90 ~~A~~a~~~Al~-------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 90 DNALLAYRQALQ-------LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHH
Confidence 999999888877 445677777777776 466676 58899999999888777 7788888888888999999
Q ss_pred HHHHHHHHHHHcCCCCChhhH
Q 041804 195 KAVKLYKEMKKKGIKMDVVAY 215 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~ 215 (403)
+|...|+.+.+.. +|+..-+
T Consensus 162 ~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 162 QAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHhhC-CCCccHH
Confidence 9999999988773 4444433
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=1.3e-07 Score=74.00 Aligned_cols=166 Identities=11% Similarity=-0.040 Sum_probs=137.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
|..+ ..+-..+...|+-+....+........ +.|....+..+....+.|++..|+..|++.....++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence 4445 666778888888888888887765543 3566677778999999999999999999999988889999999999
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (403)
+|.+.|+++.|...|.+..+ -.+.+....|.+.-.|.-.|+.+.|..++......+.. |...-..+.-....
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~-------L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~ 214 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALE-------LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGL 214 (257)
T ss_pred HHHHccChhHHHHHHHHHHH-------hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhh
Confidence 99999999999999988877 44666777888998999999999999999998887665 77777788888899
Q ss_pred cCChhHHHHHHHHHHHc
Q 041804 190 SGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~ 206 (403)
.|+++.|.++...-...
T Consensus 215 ~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 215 QGDFREAEDIAVQELLS 231 (257)
T ss_pred cCChHHHHhhccccccc
Confidence 99999999887665543
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=5.5e-09 Score=55.29 Aligned_cols=32 Identities=53% Similarity=0.980 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777776666
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=3.4e-05 Score=76.44 Aligned_cols=334 Identities=9% Similarity=-0.079 Sum_probs=206.1
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCC-----CCCH--HHHHHHHHHHHhc
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSS-----IPNH--ATFRIMFKRYVTA 80 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~l~~~~~~~ 80 (403)
.|++..+.+.++.+.. .....++.........+...|+++++..+++.....-.. .+.. .....+...+...
T Consensus 387 ~g~~~~l~~~l~~lp~-~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 387 QGELSLLEECLNALPW-EVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred cCChHHHHHHHHhCCH-HHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 4566666666655431 111122333344556667889999999999877543100 1111 1222334556689
Q ss_pred CChHHHHHHHHHHhhcCCC-cH----HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 81 HLVNEAMGTFNKLDEFGLK-DE----VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
|+++.|...++........ +. ...+.+...+...|++++|...+.+........+ .......+...+...+...
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHHHC
Confidence 9999999999998764222 22 3456667777889999999999887664321000 1111234556677788899
Q ss_pred CChhHHHHHHHHHHhC----CCC--C-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCC--hhhHHHHHHHHhh
Q 041804 156 SWWGKCREFWEEMDKR----GVV--K-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK--GIKMD--VVAYNTVIRAVGV 224 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~ll~~~~~ 224 (403)
|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999998876542 211 1 2234455666778889999999999887653 11122 2344445667778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHH-----HHHHHHHHhcCcHHHHHHHHHhchhcCCCCChh------hHHHHHHhh
Q 041804 225 SEGVDFAMRVYREMREMGCQPS-VVTC-----NTVIKLLCENGRVREAYAVLAEMPKKGCVPDVI------TYHCFFRCL 292 (403)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~ 292 (403)
.|+.+.|...+........... ...+ ...+..+...|+.+.|...+............. ....+....
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 9999999999988865311111 1111 112244556899999999987765422111111 111223344
Q ss_pred CCHHHHHHHHHHHHHc----CCCCc-hhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 293 EKPREILGLFDRMIES----GIRPK-MDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 293 ~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
++.++|...++..... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888998888887753 32222 245666777888999999999999998765
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=2.9e-06 Score=81.01 Aligned_cols=249 Identities=10% Similarity=0.017 Sum_probs=192.3
Q ss_pred cHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC---CHHHHHHHHHHHHhcCChHHH
Q 041804 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP---NHATFRIMFKRYVTAHLVNEA 86 (403)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 86 (403)
.++.|.++-+.+.. .+.+...|-..|......+++++|++++++....-...- -...|-++++.-..-|.-+..
T Consensus 1440 ~pesaeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 44556666666654 244567899999999999999999999999887521111 134677888877778888999
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHH
Q 041804 87 MGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE 166 (403)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 166 (403)
.++|+++.+.. ..-..|..|...|.+.+..++|-++++.|.+. ......+|...+..+.+.++-+.|..++.
T Consensus 1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-------FGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-------hcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999988732 24456888999999999999999999999985 34677889999999999999999999999
Q ss_pred HHHhCCCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 041804 167 EMDKRGVV-KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP 245 (403)
Q Consensus 167 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (403)
+..+.=++ -......-.+..-.+.|+.+.+..+|+...... +--...|+..+..-.+.++.+.++.+|+++...++.|
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 88775322 122334444555678999999999999998873 3356789999999999999999999999999988766
Q ss_pred CH--HHHHHHHHHHHhcCcHHHHHHHH
Q 041804 246 SV--VTCNTVIKLLCENGRVREAYAVL 270 (403)
Q Consensus 246 ~~--~~~~~li~~~~~~g~~~~a~~~~ 270 (403)
.. ..|...+..--+.|+-+.+..+=
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 53 56777777666677755544443
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=5e-05 Score=69.23 Aligned_cols=325 Identities=12% Similarity=0.082 Sum_probs=192.1
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCC--------CCCHHHHHHHHH
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSS--------IPNHATFRIMFK 75 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~l~~ 75 (403)
++..-|+.+.|.+-.+.+. +..+|..+.+.|.+.++++-|.-.+-.|....+. .|+ ..=.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 3455688999988888776 3568999999999999888887766666542110 121 11112233
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 76 RYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
.....|..++|+.+|++.+. |..|-+.|-..|.+++|.++-+.--. ..-..+|......+-..
T Consensus 809 LAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DR---------iHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDR---------IHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccc---------eehhhhHHHHHHHHHhh
Confidence 34567889999999988877 55666778889999999988543221 11223456666666677
Q ss_pred CChhHHHHHHHHHH----------hCCC---------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 041804 156 SWWGKCREFWEEMD----------KRGV---------VKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYN 216 (403)
Q Consensus 156 ~~~~~a~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (403)
++.+.|++.|++.. ...+ ..|...|.-....+-..|+.+.|+.+|...+. |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 88888888777532 1111 11333344444444455666666666655443 33
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcC--------CCCChhhHHHH
Q 041804 217 TVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG--------CVPDVITYHCF 288 (403)
Q Consensus 217 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~l 288 (403)
.+++..|-.|+.++|.++-++- -|......+.+.|-..|++.+|...|.+..... ...+...+|..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4555556677777777664432 255666678888999999999998887754210 00111222211
Q ss_pred HH-hhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHH--------HHh--cCCCCCHHHHHHHHH
Q 041804 289 FR-CLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKK--------MEE--LGCSPDEFAYNALVD 357 (403)
Q Consensus 289 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~ 357 (403)
+. .-.+.-.|-.+|++ .|.. +...+..|-+.|.+.+|+++--+ +.. ..-..|+...+...+
T Consensus 1017 l~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 11 11112223333332 2221 22334556777877777765321 111 222357777777778
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041804 358 ALIDKGMLDMARKYDEEMF 376 (403)
Q Consensus 358 ~~~~~g~~~~a~~~~~~m~ 376 (403)
.++...++++|..++-...
T Consensus 1089 FF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 8888888888877665433
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=4.7e-05 Score=60.03 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=40.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK----SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS 225 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 225 (403)
..+.+..+++-|.+.+++|.+.. +..|.+.|..++.+ .+.+.+|.-+|++|-+. .+|+..+.+-...++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 33344444555555555554431 33344444444332 23344555555555443 344444444445555555
Q ss_pred CCHHHHHHHHHHHHHc
Q 041804 226 EGVDFAMRVYREMREM 241 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~ 241 (403)
+++++|..+++.....
T Consensus 221 ~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDK 236 (299)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 5555555555555444
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=0.00019 Score=66.17 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=112.8
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
.++++.|+.....+.+.++..+...++.++ .+.+.|+.++|..+++.....+ ..|..|...+-.+|-..++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHH
Confidence 478889999888887655444433344333 3458899999999998887765 247888999999999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC----------
Q 041804 88 GTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW---------- 157 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------- 157 (403)
.+|++.....+. ......+..+|.+.+.+.+-.++--++.+ ..+.+...+-++++.+...-.
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK-------~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK-------NFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 999999887766 77777788888888877665554444433 223344444444444433211
Q ss_pred hhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 041804 158 WGKCREFWEEMDKRG-VVKDLHSYSIYMDIMCKSGKPWKAVKLY 200 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 200 (403)
..-|.+.++.+.+.+ ..-+..-.......+...|++++|++++
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 123444455544433 1111111222223334556666666665
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=9.2e-07 Score=65.61 Aligned_cols=92 Identities=5% Similarity=-0.188 Sum_probs=46.1
Q ss_pred HHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC
Q 041804 36 SVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK 115 (403)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (403)
.+...+...|++++|...|+...... +.+..+|..+..++...|++++|+..|+.....++.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 34444455555555555555554443 2344445555555555555555555555555544445555555555555555
Q ss_pred CHHHHHHHHhcccc
Q 041804 116 HVIEAQELCFGENK 129 (403)
Q Consensus 116 ~~~~a~~~~~~~~~ 129 (403)
+.++|...|+....
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544433
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=6.8e-07 Score=70.12 Aligned_cols=127 Identities=9% Similarity=0.107 Sum_probs=108.0
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH-HhcCC--HHHH
Q 041804 44 FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDAL-CEYKH--VIEA 120 (403)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 120 (403)
.++.+++...++...+.. +.+...|..+...|...|+++.|+..|++..+..+.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 567788888888877765 578889999999999999999999999999999988999999998874 67676 5999
Q ss_pred HHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH
Q 041804 121 QELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSY 180 (403)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 180 (403)
..++++... ..+.+..++..+...+.+.|++++|...|+++.+...+ +..-+
T Consensus 130 ~~~l~~al~-------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~-~~~r~ 181 (198)
T PRK10370 130 REMIDKALA-------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP-RVNRT 181 (198)
T ss_pred HHHHHHHHH-------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHH
Confidence 999999888 44667888999999999999999999999999887544 44333
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.2e-05 Score=62.74 Aligned_cols=85 Identities=16% Similarity=0.024 Sum_probs=39.0
Q ss_pred hcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCCh
Q 041804 79 TAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWW 158 (403)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (403)
..|++++|+++|+.+.+.++.|..++..-+...-..|+.-+|++-+....+ .+..|...|.-+...|...|++
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-------~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-------KFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHhHhHH
Confidence 344445555555555544444444444444444444444444444444443 3344444444444444444444
Q ss_pred hHHHHHHHHHHh
Q 041804 159 GKCREFWEEMDK 170 (403)
Q Consensus 159 ~~a~~~~~~~~~ 170 (403)
++|.=.++++.-
T Consensus 171 ~kA~fClEE~ll 182 (289)
T KOG3060|consen 171 EKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=4.5e-06 Score=77.67 Aligned_cols=135 Identities=7% Similarity=0.072 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
+.+...+..|.....+.|..++|+.+++...+..+.+...+..+..++.+.+++++|...+++... ..+.+..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-------~~p~~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-------GGSSSAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-------cCCCCHH
Confidence 345677777888888888888888888888888877888888888888888888888888887777 4466677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 144 IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 144 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
....+..++.+.|++++|..+|+++...+.. +..++..+..++...|+.++|...|+...+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777888888888888888888888875444 5677888888888888888888888887765
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=7.8e-07 Score=79.31 Aligned_cols=226 Identities=10% Similarity=-0.006 Sum_probs=174.8
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChH
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVN 84 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (403)
+..-|-.+.|+.+|+.+. .|..+|.+|...|+..+|..+..+-.++ +|+...|..+.+.....--++
T Consensus 408 l~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 408 LLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccChHHHH
Confidence 344566777888887654 5888899999999999999999888884 489999988888887777788
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHH
Q 041804 85 EAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREF 164 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 164 (403)
+|.++++..... +-..+.....+.+++.++.+.++.... -.+....+|..+..++.+.++++.|.+.
T Consensus 475 kawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~-------~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 475 KAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLE-------INPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhh-------cCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 888888765442 223333333457899999998887665 3456677889999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC-
Q 041804 165 WEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC- 243 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 243 (403)
|..-....+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+...
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9998887665 77899999999999999999999999999887 55667788888888899999999999998875421
Q ss_pred CCCHHHHHHHHHHHH
Q 041804 244 QPSVVTCNTVIKLLC 258 (403)
Q Consensus 244 ~~~~~~~~~li~~~~ 258 (403)
..+..+...++....
T Consensus 620 ~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTVL 634 (777)
T ss_pred cccchhhHHHHHHHH
Confidence 124444444444433
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=0.00014 Score=62.57 Aligned_cols=113 Identities=11% Similarity=-0.052 Sum_probs=58.7
Q ss_pred HhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Q 041804 112 CEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG 191 (403)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (403)
...|+.++|+..++.+.. ..|.|...+......+.+.++.++|.+.++++....+. ....+..+..+|.+.|
T Consensus 317 ~~~~~~d~A~~~l~~L~~-------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g 388 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA-------AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGG 388 (484)
T ss_pred HHhcccchHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcC
Confidence 344555555555555544 23444444555555555555555555555555554322 1344444555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 041804 192 KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMR 233 (403)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 233 (403)
++++|+.+++...... +-|...|..|.++|...|+..++..
T Consensus 389 ~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 389 KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 5555555555555442 3355555555555555555544443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=1.1e-06 Score=65.16 Aligned_cols=106 Identities=11% Similarity=-0.040 Sum_probs=91.1
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+.+.. -.+.+...|..+..++.+.|++++|...|++..... +.+..++..+..++...|+
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCC
Confidence 345678999999999999884 235578899999999999999999999999999876 4678899999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
+++|+..|+...+..+.+...+.....++.
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999998888888766655544
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00023 Score=62.64 Aligned_cols=197 Identities=10% Similarity=0.094 Sum_probs=132.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
.-+=++.+.+.|++++|.+...++...+ +.+..++..-+-+.++.+.+++|+.+.+.-.... .+...+..-..+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHH
Confidence 3344677889999999999999999875 4556778888888999999999996554332211 111222223344457
Q ss_pred cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------------------
Q 041804 114 YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV------------------- 174 (403)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------- 174 (403)
.+..++|...+.... +.+..+...-...+.+.|++++|.++|+.+.+.+..
T Consensus 92 lnk~Dealk~~~~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred cccHHHHHHHHhccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 999999999887322 233446666778899999999999999998655431
Q ss_pred --------CcHHHHHHHHH---HHHHcCChhHHHHHHHHHHHcC-------CCCCh-------hhHHHHHHHHhhcCCHH
Q 041804 175 --------KDLHSYSIYMD---IMCKSGKPWKAVKLYKEMKKKG-------IKMDV-------VAYNTVIRAVGVSEGVD 229 (403)
Q Consensus 175 --------~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~ll~~~~~~~~~~ 229 (403)
....+|..+.+ .+...|++.+|+++++...+.+ -.-+. .+-..+.-.+-..|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 11224544443 4556899999999999883221 11011 11223444566789999
Q ss_pred HHHHHHHHHHHcCC
Q 041804 230 FAMRVYREMREMGC 243 (403)
Q Consensus 230 ~a~~~~~~~~~~~~ 243 (403)
+|..++....+...
T Consensus 242 ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998887643
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=1.4e-05 Score=74.10 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=72.8
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
+-..+...|.+.|+.... -...+..........|+...+++.|..+.-...+......-...|....-.|...++...
T Consensus 503 rd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 503 RDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 333344455555544432 012234444555555555555555555533322221000111122233334445555666
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
|+..|+...+.+|.|...|..++.+|.+.|.+..|.++|.+...- .|.+...-.-....-+..|.+.+|...+
T Consensus 581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-------rP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-------RPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-------CcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666666666655556666666666666666666666666555431 1222222222333344556666665555
Q ss_pred HHH
Q 041804 166 EEM 168 (403)
Q Consensus 166 ~~~ 168 (403)
...
T Consensus 654 ~~i 656 (1238)
T KOG1127|consen 654 GLI 656 (1238)
T ss_pred HHH
Confidence 544
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=2.8e-05 Score=72.57 Aligned_cols=200 Identities=11% Similarity=-0.001 Sum_probs=152.1
Q ss_pred CHHhHHHHHHHHHccCChhHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSW-NLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
++.....+=.+.+.-|..++|- +++.+..+ ++....+.....+++.-........+.+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHH
Confidence 3444555555666677766663 34443332 223333333444444444444444455899999999
Q ss_pred HHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
.+..+.|..++|..+++...+ -.|.+......+...+.+.+++++|....++.....+. +......+..++.
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~-------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~ 165 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ-------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWD 165 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH
Confidence 999999999999999999887 55777888999999999999999999999999998877 7888899999999
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 041804 189 KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNT 252 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (403)
+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.. .+...-|+.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 9999999999999999853 3457889999999999999999999999998762 233444443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=4.9e-05 Score=59.97 Aligned_cols=233 Identities=11% Similarity=0.080 Sum_probs=99.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 75 KRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
+-+.-.|++..++..-....... .+...-.-+-++|...|....... +... +..|.......+......
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~---eI~~-------~~~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVIS---EIKE-------GKATPLQAVRLLAEYLEL 84 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccc---cccc-------ccCChHHHHHHHHHHhhC
Confidence 33444555655555444433322 234444445555665565433221 1111 112222222322222222
Q ss_pred cCChhHH-HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 041804 155 MSWWGKC-REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMR 233 (403)
Q Consensus 155 ~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 233 (403)
-++.+.- .++.+.+.......+......-...|+..+++++|++...... +......=...+.+..+++.|.+
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2333344433333233333333445666666666666655411 22222222334445666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHH
Q 041804 234 VYREMREMGCQPSVVTCNTVIKLLCE----NGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMI 306 (403)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~ 306 (403)
.+++|.+. .+..+.+.|..++.+ .+.+..|.-+|++|.++ ..|+..+.+....++ +++++|..+++...
T Consensus 159 ~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 159 ELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 66666653 244444444444433 33455566666665543 233333333222211 34444444444444
Q ss_pred HcCCCCchhhHHHHHHHHHhcCC
Q 041804 307 ESGIRPKMDTYVMLLRKFGRWGF 329 (403)
Q Consensus 307 ~~~~~~~~~~~~~li~~~~~~g~ 329 (403)
..... ++.+...++.+-...|.
T Consensus 235 ~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 235 DKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred hccCC-CHHHHHHHHHHHHHhCC
Confidence 43322 34444444444334443
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=2.4e-06 Score=63.01 Aligned_cols=94 Identities=10% Similarity=-0.000 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (403)
...+...+...|++++|.+.|+.+...++.+...+..+..++...|++++|...+++... ..+.+...+..+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~la 92 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-------LDPDDPRPYFHAA 92 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCChHHHHHHH
Confidence 333444444444444444444444444433444444444444444444444444444333 1122333333344
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 041804 150 RGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~ 170 (403)
..+...|++++|.+.|+...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444433
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=7.6e-05 Score=64.10 Aligned_cols=146 Identities=12% Similarity=-0.044 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (403)
+--....+...|+++.|+..++.+.+..+.|+..+......+.+.++.++|.+.++++... .+......-.+.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-------~P~~~~l~~~~a 381 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-------DPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCccHHHHHHH
Confidence 3334445667899999999999999988889999999999999999999999999998874 344467788889
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVD 229 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 229 (403)
.++.+.|++.+|.++++........ |+..|..|..+|...|+..++..-..+ .+...|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHH
Confidence 9999999999999999999988777 899999999999999999888765544 345578888
Q ss_pred HHHHHHHHHHHc
Q 041804 230 FAMRVYREMREM 241 (403)
Q Consensus 230 ~a~~~~~~~~~~ 241 (403)
.|...+....+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 888888888776
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.57 E-value=5.6e-05 Score=71.52 Aligned_cols=218 Identities=11% Similarity=0.026 Sum_probs=124.8
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH-ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN 106 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 106 (403)
+.+...+..|+..+...+++++|.++.+...+.. |+. ..|-.+...+.+.++.+.+.-+ .+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~---------- 92 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL--NLIDS---------- 92 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh--hhhhh----------
Confidence 3457899999999999999999999999888765 443 3344444466677776665554 22222
Q ss_pred HHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (403)
.....++.-...+...+.. ...+..++..+..+|-+.|+.++|..+|+++.+.++. |+.+.|.+...
T Consensus 93 ----~~~~~~~~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~ 159 (906)
T PRK14720 93 ----FSQNLKWAIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATS 159 (906)
T ss_pred ----cccccchhHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHH
Confidence 1222222111111111111 1223335666667777777777777777777776654 66677777777
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH-----hhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc
Q 041804 187 MCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV-----GVSEGVDFAMRVYREMREM-GCQPSVVTCNTVIKLLCEN 260 (403)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 260 (403)
|... +.++|.+++.+....-+ +..-|+.+...+ ....+++.-.++.+.+... |..--..++-.+-..|-..
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 7666 77777777666655411 111122222111 1223344444444444443 3333344555566677777
Q ss_pred CcHHHHHHHHHhchhc
Q 041804 261 GRVREAYAVLAEMPKK 276 (403)
Q Consensus 261 g~~~~a~~~~~~~~~~ 276 (403)
.+|+++..+++.+.+.
T Consensus 237 ~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 237 EDWDEVIYILKKILEH 252 (906)
T ss_pred hhhhHHHHHHHHHHhc
Confidence 7788888888877765
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=4.7e-06 Score=61.48 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=58.0
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
......+...+...|++++|...|+.+...+ +.+...|..+..++...|++++|...++...+.++.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3444555555666666666666666665543 23455566666666666666666666666666555566666666666
Q ss_pred HHhcCCHHHHHHHHhcccc
Q 041804 111 LCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (403)
+...|++++|...++....
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655544
No 129
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00033 Score=65.60 Aligned_cols=125 Identities=11% Similarity=0.147 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhchhc---CCCCChhhHHHHHHhhC--CHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 041804 250 CNTVIKLLCENGRVREAYAVLAEMPKK---GCVPDVITYHCFFRCLE--KPREILGLFDRMIESGIRPKMDTYVMLLRKF 324 (403)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (403)
+-.+.+.|.++|-...|++.+.++.+- -+..+...-..+..-++ ..+++.+.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 566778899999999999888776431 11111111123333343 4788999999999988888877777777777
Q ss_pred HhcCCcchHHHHHHHHHhc-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041804 325 GRWGFLRPVFVVWKKMEEL-----------GCSPDEFAYNALVDALIDKGMLDMARKYDEE 374 (403)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 374 (403)
...=-.+..+++|+..+.. ++.-|+...-..|.+.++.|++.+..++.++
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 7666667777777776532 3567788888889999999999998887653
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.54 E-value=0.00048 Score=60.09 Aligned_cols=129 Identities=8% Similarity=0.085 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC-ChhhHHHHHHhhC--CHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 041804 248 VTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP-DVITYHCFFRCLE--KPREILGLFDRMIESGIRPKMDTYVMLLRKF 324 (403)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (403)
.+|..+++.-.+..-++.|..+|.+..+.+..+ +...+++++..++ +..-|.++|+.=...-. -++.-....+..+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~-d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFG-DSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-CChHHHHHHHHHH
Confidence 456666777777777888888888888777766 6777777877663 45567777776554321 1333445666777
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 325 GRWGFLRPVFVVWKKMEELGCSPD--EFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
...++-..|..+|++....++.|+ ...|..+++.=..-|+...+.++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 788888888888888887755554 46788888888888888888887777665
No 131
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00057 Score=64.14 Aligned_cols=219 Identities=15% Similarity=0.116 Sum_probs=109.3
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSI-PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
.|++..+..+.++...+-..+.+++++++.-.+..- .+...-|.|+-... .-+..++.+..+++...+.++.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~i------ 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPDI------ 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchhH------
Confidence 356666677788888888888888888887543221 22223333333333 3344566666666655544322
Q ss_pred HHHHHhcCCHHHHHHHHhcccccc-----------------cccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 108 VDALCEYKHVIEAQELCFGENKNV-----------------GFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
...+...+-+++|..+|++..... ++. .......+|..+..+-.+.|...+|.+-|-+..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efA--e~~n~p~vWsqlakAQL~~~~v~dAieSyikad- 1131 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFA--ERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD- 1131 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHH--HhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC-
Confidence 122333444555555554432210 000 001122345555555555555555555443332
Q ss_pred CCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 041804 171 RGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTC 250 (403)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (403)
|+..|...+....+.|.+++-.+.+...++..-.|... +.|+-+|++.++..+.+.++ .-|+....
T Consensus 1132 -----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i 1197 (1666)
T KOG0985|consen 1132 -----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANI 1197 (1666)
T ss_pred -----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhH
Confidence 44556666666666666666666555555544333333 34555666666554433332 12344444
Q ss_pred HHHHHHHHhcCcHHHHHHHHH
Q 041804 251 NTVIKLLCENGRVREAYAVLA 271 (403)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~ 271 (403)
..+.+-|...|.++.|.-+|.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHH
Confidence 444444444444444444443
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.52 E-value=9.2e-05 Score=68.95 Aligned_cols=182 Identities=12% Similarity=0.045 Sum_probs=127.5
Q ss_pred ChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELC 124 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (403)
+...|...|-+....+ |+ ...|..|...|....+...|.+.|++..+.+..+........+.|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3555555555555433 33 4578888888888889999999999999988889999999999999999999999885
Q ss_pred hcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041804 125 FGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204 (403)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (403)
-...+.. ....-...|-...-.|.+.++...|..-|+...+..++ |...|..++.+|...|++..|+++|.+..
T Consensus 550 l~~~qka-----~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 550 LRAAQKA-----PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHhhhc-----hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 4433321 11111222333445567788888999889888888777 88889999999999999999999998876
Q ss_pred HcCCCCChhhHHHHH--HHHhhcCCHHHHHHHHHHHH
Q 041804 205 KKGIKMDVVAYNTVI--RAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 205 ~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~ 239 (403)
.. .|+. +|...- -.-+..|.+.++...+....
T Consensus 624 ~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 624 LL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 64 3332 222221 22345666666666666554
No 133
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.00077 Score=61.91 Aligned_cols=191 Identities=14% Similarity=0.065 Sum_probs=110.9
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
.|+.+.|+.+|+... -|-+++++.+-+|+.++|-.+-++- -|..+.-.+.+.|-..|++.+|.
T Consensus 925 ~GemdaAl~~Y~~A~----------D~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 925 VGEMDAALSFYSSAK----------DYFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred ccchHHHHHHHHHhh----------hhhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHH
Confidence 355555555555443 2555666666667777776655442 46667788999999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHH---------------HHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 88 GTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEA---------------QELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
..|.+... +.+.|+.|-.++--++. -..|++.-. -+...+-.|
T Consensus 988 ~FfTrAqa--------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------------~~~~AVmLY 1045 (1416)
T KOG3617|consen 988 KFFTRAQA--------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------------YAHKAVMLY 1045 (1416)
T ss_pred HHHHHHHH--------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------------hhhHHHHHH
Confidence 99987654 55556655544433332 223322211 123344567
Q ss_pred HhcCChhHHHHHHHH--------HHh--CCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH----------cCC----
Q 041804 153 FKMSWWGKCREFWEE--------MDK--RGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK----------KGI---- 208 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~---- 208 (403)
.+.|.+.+|+++--+ +.. .....|+...+--...++...++++|..++-..++ .|+
T Consensus 1046 HkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vte 1125 (1416)
T KOG3617|consen 1046 HKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTE 1125 (1416)
T ss_pred HhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 778888887764211 122 22334555566666666677777777766543322 111
Q ss_pred ------------CCCh----hhHHHHHHHHhhcCCHHHHHHHHHH
Q 041804 209 ------------KMDV----VAYNTVIRAVGVSEGVDFAMRVYRE 237 (403)
Q Consensus 209 ------------~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 237 (403)
.|+. .....+...|.+.|.+..|.+-|.+
T Consensus 1126 e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1126 EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2222 2345566677788877766655543
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.0002 Score=56.19 Aligned_cols=188 Identities=12% Similarity=-0.043 Sum_probs=109.4
Q ss_pred CChhHHHHHHHHhhhCCC---CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHH
Q 041804 45 FEFDLSWNLIHRMKDNPS---SIPNHA-TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEA 120 (403)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~---~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 120 (403)
.+.++..+++..+..... ..++.. .|..++-+....|+.+.|..+++.+...-+.+..+-..-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 455555666555543211 123332 3555666666777777777777777666544444444444444556777777
Q ss_pred HHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 041804 121 QELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLY 200 (403)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 200 (403)
.++++.+.. ..|.|..++---+...-..|+.-+|++-+....+.=+. |...|.-+...|...|++++|.-.+
T Consensus 106 ~e~y~~lL~-------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 106 IEYYESLLE-------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HHHHHHHhc-------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 777777666 33556666666666666666666666666665554333 6777777777777777777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhh---cCCHHHHHHHHHHHHHc
Q 041804 201 KEMKKKGIKMDVVAYNTVIRAVGV---SEGVDFAMRVYREMREM 241 (403)
Q Consensus 201 ~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~ 241 (403)
+++.-.. |.+...+..+...+.- ..+.+.+.++|....+.
T Consensus 178 EE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 178 EELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7766542 2233333333333322 33455666666666664
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.48 E-value=0.00071 Score=59.08 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041804 193 PWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP-SVVTCNTVIKLLCENGRVREAYAVLA 271 (403)
Q Consensus 193 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (403)
.+....++++++..-..--..+|..+|+...+..-+..|+.+|.++.+.+..+ ++.++++++.-|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45566666666655322234577888888889999999999999999988777 7788888888776 478889999999
Q ss_pred hch-hcCCCCC-hhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCch--hhHHHHHHHHHhcCCcchHHHHHHHHHhc---C
Q 041804 272 EMP-KKGCVPD-VITYHCFFRCLEKPREILGLFDRMIESGIRPKM--DTYVMLLRKFGRWGFLRPVFVVWKKMEEL---G 344 (403)
Q Consensus 272 ~~~-~~~~~p~-~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 344 (403)
--. ..|-.|- ...|-..+..+++-..+..+|++....++.|+. ..|..++..=+.-|+...+.++-+++... .
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 754 4333332 334556677788889999999999988666554 78999999999999999999998887543 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCH
Q 041804 345 CSPDEFAYNALVDALIDKGML 365 (403)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~ 365 (403)
..+....-..+++-|.-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 122223344556666555544
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=7.6e-06 Score=70.52 Aligned_cols=126 Identities=11% Similarity=0.113 Sum_probs=101.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
....|+..+...++++.|+.+|+++.+.. |+.. ..+++.+...++-.+|++++++..+..+.+...+..-.+.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556666777888999999999998865 6543 457788888888889999999988877778888888888888
Q ss_pred hcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 113 EYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
+.++.+.|+.+.+++.. -.|.+..+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~-------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE-------LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999888877 4456667889999999999999999888887653
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.46 E-value=0.0004 Score=62.88 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=45.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 041804 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264 (403)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 264 (403)
.+......|.+|+.+++.+..... -..-|..+...|+..|+++.|.++|-+.- .++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 344455566666666666655532 22335556666777777777776664332 2344566667777777
Q ss_pred HHHHHHHhch
Q 041804 265 EAYAVLAEMP 274 (403)
Q Consensus 265 ~a~~~~~~~~ 274 (403)
.|.++-.+..
T Consensus 809 da~kla~e~~ 818 (1636)
T KOG3616|consen 809 DAFKLAEECH 818 (1636)
T ss_pred HHHHHHHHhc
Confidence 7766665544
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=2.9e-05 Score=57.88 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=95.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH----ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVS 103 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 103 (403)
...|..++..+ ..++...+...++.+.... |+. .+.-.+...+...|++++|...|+++....+. ....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 34566666666 4888899999999998875 333 34445668888999999999999999987743 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEM 168 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 168 (403)
...+..++...|++++|+..++..... ......+......|.+.|++++|...|+..
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~~~~--------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQIPDE--------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhccCc--------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666788899999999999999764332 345556778888999999999999888764
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.42 E-value=5.9e-07 Score=48.39 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 041804 351 AYNALVDALIDKGMLDMARKYDEEMFAKGLSAK 383 (403)
Q Consensus 351 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 383 (403)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777765
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.39 E-value=7.6e-07 Score=47.53 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 041804 350 FAYNALVDALIDKGMLDMARKYDEEMFAKGLSA 382 (403)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 382 (403)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 367777777777777777777777777777665
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=2.2e-05 Score=67.75 Aligned_cols=127 Identities=12% Similarity=0.008 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH
Q 041804 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS 179 (403)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 179 (403)
+......++..+...++++.|..+++++... .|+ +...+++.+...++..+|.+++++.....+. +...
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~--------~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~L 236 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRER--------DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSEL 236 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhc--------CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHH
Confidence 4455556666666677777777777777654 233 3345667777777777777777777765444 5566
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD-VVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
...-...+.+.++++.|+.+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666777777788888887777776 344 4477778888888888888877777665
No 142
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.33 E-value=0.0002 Score=64.74 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVD 229 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 229 (403)
.+.....+|.+|+.+++.+...... ..-|..+..-|...|+++.|.++|-+.- .++-.|..|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 3344444555555555544443221 1234444445555555555555443221 1233344455555555
Q ss_pred HHHHHH
Q 041804 230 FAMRVY 235 (403)
Q Consensus 230 ~a~~~~ 235 (403)
.|.++-
T Consensus 809 da~kla 814 (1636)
T KOG3616|consen 809 DAFKLA 814 (1636)
T ss_pred HHHHHH
Confidence 554443
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.4e-06 Score=46.90 Aligned_cols=33 Identities=39% Similarity=0.776 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (403)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.30 E-value=1.2e-06 Score=46.71 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC
Q 041804 248 VTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP 280 (403)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 280 (403)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555666666666666666666655555554
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=0.00014 Score=54.24 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh--hhHHHH
Q 041804 143 KIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK--DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV--VAYNTV 218 (403)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 218 (403)
..|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+........|+. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455666665 4788899999999998875441 1233444567888999999999999999987533322 234456
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 219 IRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
...+...|++++|+..++..... ......+......|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888999999999999774433 234556777889999999999999998763
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.18 E-value=5.5e-05 Score=51.35 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=43.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 041804 183 YMDIMCKSGKPWKAVKLYKEMKKKGI-KMDVVAYNTVIRAVGVSE--------GVDFAMRVYREMREMGCQPSVVTCNTV 253 (403)
Q Consensus 183 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 253 (403)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 566666666666554322 233455566666666666666666666
Q ss_pred HHHHHh
Q 041804 254 IKLLCE 259 (403)
Q Consensus 254 i~~~~~ 259 (403)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.18 E-value=7.2e-05 Score=64.95 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH
Q 041804 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS 179 (403)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 179 (403)
+......++..+....+.+.+..++.+...... ....-..+..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~----~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPN----CSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcc----cccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 555666666776667777777777666655321 1111222335777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 041804 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS 225 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 225 (403)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666555666665555555444
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=0.00015 Score=55.79 Aligned_cols=93 Identities=10% Similarity=-0.063 Sum_probs=67.6
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
....+..+...+...|++++|...|++.......+++ ...+..+..++.+.|++++|+..+++..+..+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3456777777888888888888888888764411222 356777888888888888888888888887766777777777
Q ss_pred HHHHhcCCHHHHHH
Q 041804 109 DALCEYKHVIEAQE 122 (403)
Q Consensus 109 ~~~~~~~~~~~a~~ 122 (403)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777776655443
No 149
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.15 E-value=0.0018 Score=52.75 Aligned_cols=66 Identities=5% Similarity=-0.026 Sum_probs=40.8
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHH-H---HHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA-T---FRIMFKRYVTAHLVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 99 (403)
+..+-.....+...|++++|.+.|+.+.... |+.. + .-.+..++.+.+++++|...|++..+..|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3333344555566777777777777777654 3222 1 234556667777777777777777776665
No 150
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.15 E-value=7e-05 Score=57.58 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=23.6
Q ss_pred HHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHH
Q 041804 263 VREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRM 305 (403)
Q Consensus 263 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~ 305 (403)
-+-|++++++|...|+.||..++..++..+|+...+..-+.+|
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 3445556666666666666666666666665555444444433
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.14 E-value=5.2e-05 Score=51.45 Aligned_cols=79 Identities=13% Similarity=0.261 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHcCCCCChhhHH
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGV-VKDLHSYSIYMDIMCKSG--------KPWKAVKLYKEMKKKGIKMDVVAYN 216 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (403)
...+..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666677999999999999999999 999999999999988754 2346788999999999999999999
Q ss_pred HHHHHHhh
Q 041804 217 TVIRAVGV 224 (403)
Q Consensus 217 ~ll~~~~~ 224 (403)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988754
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.13 E-value=6.5e-05 Score=65.22 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc
Q 041804 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN 140 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (403)
+.+......+++.+....+++.+..++.+.....-. -+.+..++++.|.+.|..+.+..++..-... |+-|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y------GiF~ 136 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY------GIFP 136 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc------ccCC
Confidence 456667777888888888889999998888776432 5667789999999999999999998877776 8999
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (403)
|..++|.||..+.+.|++..|.++...|...+.-.+..|+..-+.+|.+-
T Consensus 137 D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 137 DNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998887777666777777766666655
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=5e-05 Score=51.75 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=47.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
+..+...+...|++++|..+++...+.. +.+...+..+..++...+++++|.+.|+......+.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3344455555555555555555555433 12234455555555555555555555555555544444455555555555
Q ss_pred cCCHHHHHHHHhcc
Q 041804 114 YKHVIEAQELCFGE 127 (403)
Q Consensus 114 ~~~~~~a~~~~~~~ 127 (403)
.|+.+.|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 55555555554443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=8.7e-05 Score=53.19 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHH
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP-NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNL 107 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l 107 (403)
.++..+...+.+.|++++|.+.|+.+.+..+..+ ....+..+..++...|+++.|...|+.+....+. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455666777777788888887777766431111 1345666777777778888888888777765443 24566677
Q ss_pred HHHHHhcCCHHHHHHHHhcccc
Q 041804 108 VDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
..++...|+.++|...++++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 7777777777777777777665
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=5.2e-05 Score=51.67 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=75.4
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+.+.+. .+.+...+..+..++...+++++|.+.++...... +.+..++..+...+...|+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHHh
Confidence 3456689999999999998752 23445778888999999999999999999988865 3455688889999999999
Q ss_pred hHHHHHHHHHHhhcCC
Q 041804 83 VNEAMGTFNKLDEFGL 98 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~ 98 (403)
.+.|...+....+..+
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 9999999998876543
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.11 E-value=4.3e-06 Score=43.42 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 041804 351 AYNALVDALIDKGMLDMARKYDEEMFAKGL 380 (403)
Q Consensus 351 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 380 (403)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666666553
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.0086 Score=55.84 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=156.9
Q ss_pred HHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH
Q 041804 41 LGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFK--RYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI 118 (403)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (403)
....+++..|..-...+.... |+.... .++. .+.+.|+.++|..+++.....+..|..+...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 346688999999999988865 665432 3333 3468899999999999988877779999999999999999999
Q ss_pred HHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-CCh----
Q 041804 119 EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS-GKP---- 193 (403)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---- 193 (403)
+|..++++.... -|+......+..+|.+.+++.+-.++--++-+.-++ +...+=.+++.+... ...
T Consensus 95 ~~~~~Ye~~~~~--------~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 95 EAVHLYERANQK--------YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHHHHHHHHHhh--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccc
Confidence 999999998864 456777888889999998887776666666554333 444444444444432 122
Q ss_pred -----hHHHHHHHHHHHcC-CCCChhhHHHHHHHHhhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 041804 194 -----WKAVKLYKEMKKKG-IKMDVVAYNTVIRAVGVSEGVDFAMRVYR-EMREMGCQPSVVTCNTVIKLLCENGRVREA 266 (403)
Q Consensus 194 -----~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 266 (403)
.-|.+.++.+.+.+ ---+..-.......+...+++++|..++. ...+.-..-+...-+.-+..+...++|.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 23455566666553 11122222333444557888999999994 444443344555556677888889999999
Q ss_pred HHHHHhchhcC
Q 041804 267 YAVLAEMPKKG 277 (403)
Q Consensus 267 ~~~~~~~~~~~ 277 (403)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 99999888774
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.10 E-value=9.3e-05 Score=61.75 Aligned_cols=133 Identities=9% Similarity=0.013 Sum_probs=99.3
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT-AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
.+|..++...-+.+..+.|..+|.+..+.+.. +...|-.....-.+ .++.+.|.++|+...+.-+.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999876522 33444444444233 5677779999999998876788999999999
Q ss_pred HHhcCCHHHHHHHHhcccccccccccccCc-chHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMN-KTKIYNMILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
+...++.+.|..+|++..... .... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988752 2222 3457888888888888888888888887765
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=6.2e-06 Score=54.87 Aligned_cols=80 Identities=6% Similarity=0.085 Sum_probs=32.4
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMG 88 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 88 (403)
|+++.|+.+|+.+.......++...+..+..++.+.|++++|..+++. ...+ +.+....-.+..++...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 445555555555443211111223333345555555555555555544 1111 1122222233444555555555555
Q ss_pred HHH
Q 041804 89 TFN 91 (403)
Q Consensus 89 ~~~ 91 (403)
.|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.08 E-value=0.00017 Score=52.90 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=87.2
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
+......+...+...|++++|.++|+.+..-+ +-+..-|-.|..++-..|++.+|+..|......++.++..+..+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34456667778889999999999999999876 3567788899999999999999999999999999889999999999
Q ss_pred HHHhcCCHHHHHHHHhccccc
Q 041804 110 ALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~ 130 (403)
++...|+.+.|.+.|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999998876654
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=0.0002 Score=51.32 Aligned_cols=58 Identities=12% Similarity=-0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhccc
Q 041804 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLKD---EVSYCNLVDALCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 71 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (403)
..+...+.+.|++++|.+.|..+....+.+ ...+..+..++.+.|+++.|...++.+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344444455555555555555554433321 2334444444445555555555444443
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=0.00051 Score=52.71 Aligned_cols=102 Identities=6% Similarity=-0.201 Sum_probs=55.9
Q ss_pred HHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 041804 11 WKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP-NHATFRIMFKRYVTAHLVNEAMGT 89 (403)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 89 (403)
+..+.+.+..+.+..+.......|..+...+...|++++|+..|++.......++ ...+|..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3334444444432222222344556666666667777777777776655431111 123566666677777777777777
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHH
Q 041804 90 FNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
+++.....+....++..+...+.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 77766655445555555555555
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00055 Score=55.32 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=79.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 75 KRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
.-+.+.+++.+|+..|.+.++..+.|...|..-..+|++.|.++.|.+-.+.... -.+....+|..|-.+|..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-------iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-------IDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-------cChHHHHHHHHHHHHHHc
Confidence 4456778899999999999998888999999999999999999988888777666 335566788888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 041804 155 MSWWGKCREFWEEMDKRGVVKDLHSYSIYM 184 (403)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (403)
.|++++|.+.|++.++. .|+..+|-.=+
T Consensus 162 ~gk~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred cCcHHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 88888888888888775 45554544433
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=1.4e-05 Score=53.20 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=65.2
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 041804 44 FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQEL 123 (403)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 123 (403)
.|+++.|+.+++++.+..+..++...+..+..+|.+.|++++|+.+++. .+.++.+......+..++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999762112455666789999999999999999999 555555656666779999999999999999
Q ss_pred Hhc
Q 041804 124 CFG 126 (403)
Q Consensus 124 ~~~ 126 (403)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.99 E-value=8.1e-06 Score=42.35 Aligned_cols=29 Identities=38% Similarity=0.650 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhchhcC
Q 041804 249 TCNTVIKLLCENGRVREAYAVLAEMPKKG 277 (403)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 277 (403)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666666554
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.97 E-value=0.0089 Score=51.44 Aligned_cols=384 Identities=10% Similarity=0.068 Sum_probs=201.6
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCC---HH-hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHH--HH
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHT---TD-TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFK--RY 77 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~---~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~ 77 (403)
+++.++++.+|.++|..+-.+....|. .+ .-+.++++|. .++++.....+....+.. |. ..|-.+.. .+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~---~~-s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF---GK-SAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc---CC-chHHHHHHHHHH
Confidence 466789999999999888753222222 12 2345556655 456777777777777754 32 23333333 33
Q ss_pred HhcCChHHHHHHHHHHhhc--C--CC--cHHH---------HHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcch
Q 041804 78 VTAHLVNEAMGTFNKLDEF--G--LK--DEVS---------YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKT 142 (403)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~--~--~~--~~~~---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 142 (403)
-+.+++++|++.+...... + ++ +... =+..+.++...|.+.++..+++++....-.. ...-+.
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkr--E~~w~~ 167 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKR--ECEWNS 167 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhh--hhcccH
Confidence 5788999999988776654 2 11 2222 2345677788999999999998887642100 223577
Q ss_pred HHHHHHHHHHHhcC--------C-------hhHHHHHHHHHHhC------CCCCcHHHHHHHHHHHHHc--CChhHHHHH
Q 041804 143 KIYNMILRGWFKMS--------W-------WGKCREFWEEMDKR------GVVKDLHSYSIYMDIMCKS--GKPWKAVKL 199 (403)
Q Consensus 143 ~~~~~l~~~~~~~~--------~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~ 199 (403)
.+|+.++-.++++= . ++.+.-+..+|... .+.|-......++....-. .+..--.++
T Consensus 168 d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~ 247 (549)
T PF07079_consen 168 DMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQI 247 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHH
Confidence 88888665554431 1 22222222333221 2334444444444433322 122333444
Q ss_pred HHHHHHcCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 200 YKEMKKKGIKMDVV-AYNTVIRAVGVSEGVDFAMRVYREMREMGCQP----SVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
++.....-+.|+.. +...+...+.+ +.+++..+-+.+....+.+ -..+|..++....+.++...|...+.-+.
T Consensus 248 l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 248 LENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444555533 33334444433 4445544444443332111 13355556666666666666655554433
Q ss_pred hcCCCC---------------------ChhhHHHH------------------------HHhh------CC-HHHHHHHH
Q 041804 275 KKGCVP---------------------DVITYHCF------------------------FRCL------EK-PREILGLF 302 (403)
Q Consensus 275 ~~~~~p---------------------~~~~~~~l------------------------~~~~------~~-~~~a~~~~ 302 (403)
-. .| |...++.+ +... |. -++|++++
T Consensus 326 ~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 326 IL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred hc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 21 11 11111100 0000 11 12232222
Q ss_pred HHH-----------------------------------------HHcCCCCch----hhHHHHHH--HHHhcCCcchHHH
Q 041804 303 DRM-----------------------------------------IESGIRPKM----DTYVMLLR--KFGRWGFLRPVFV 335 (403)
Q Consensus 303 ~~~-----------------------------------------~~~~~~~~~----~~~~~li~--~~~~~g~~~~a~~ 335 (403)
+.+ .+.|+.|-. ..-|.|.. .+...|++.++.-
T Consensus 404 k~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 404 KLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 222 233444322 22223332 2456677777776
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCC
Q 041804 336 VWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGTKLVQGGLDGE 400 (403)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~ 400 (403)
.-..+.+ +.|++.+|..+.-++....++++|..++..+.-..---|..+.-+..+++.-+..+
T Consensus 484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCqKh~~kd 546 (549)
T PF07079_consen 484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQKHLPKD 546 (549)
T ss_pred HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhhhhh
Confidence 6555555 57999999999999999999999999998775533333444455555555544433
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00032 Score=60.83 Aligned_cols=89 Identities=15% Similarity=-0.024 Sum_probs=49.6
Q ss_pred HHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH
Q 041804 39 DILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI 118 (403)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (403)
..+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++++....+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34445556666666666555543 2334455555555555666666666666655555555555555555555555555
Q ss_pred HHHHHHhcccc
Q 041804 119 EAQELCFGENK 129 (403)
Q Consensus 119 ~a~~~~~~~~~ 129 (403)
+|...|++...
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.96 E-value=0.00049 Score=57.49 Aligned_cols=131 Identities=11% Similarity=0.030 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh-cCCHHHHHHHHhcccccccccccccCcchHHHH
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE-YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYN 146 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (403)
.+|-.+++..-+.+..+.|..+|.+..+.+..+..+|......-.. .++.+.|.++|+...+ ..+.+...|.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk-------~f~~~~~~~~ 74 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK-------KFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH-------HHTT-HHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------HCCCCHHHHH
Confidence 3566667777777777777777777765444355555544444223 4555557777777666 4456666677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKD---LHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
..+..+.+.++.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777777654 2212 136677777666777777777777666664
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.00079 Score=61.08 Aligned_cols=137 Identities=7% Similarity=-0.077 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC--------CHHHHHHHHhcccc
Q 041804 63 SIPNHATFRIMFKRYVTAH-----LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK--------HVIEAQELCFGENK 129 (403)
Q Consensus 63 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 129 (403)
.+.+..+|...+++..... +...|..+|++..+.++.....+..+..++.... +...+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3567788888888765432 3679999999999999888777777655554321 12222222222111
Q ss_pred cccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 130 NVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
.. ..+.+..+|..+.-.+...|++++|...+++....+ |+...|..+...+...|++++|.+.|++....
T Consensus 413 l~-----~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LP-----ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cc-----cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 10 123334556666555555677777777777776664 45666777777777777777777777666654
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.92 E-value=0.0002 Score=62.09 Aligned_cols=102 Identities=8% Similarity=-0.024 Sum_probs=85.9
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChH
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVN 84 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (403)
+...|++++|++.|+.+... .+.+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|+++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHH
Confidence 34578999999999999852 34567889999999999999999999999999976 346778999999999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 85 EAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
+|+..|++..+.++.+......+-.+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999887776665555444
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.91 E-value=0.0061 Score=49.66 Aligned_cols=177 Identities=10% Similarity=0.016 Sum_probs=97.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhH---HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAY---NTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCE- 259 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 259 (403)
...+...|++++|.+.|+.+...-.. +.... -.+..++.+.++++.|...+++..+..+.....-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33445566666666666666654211 11111 23445556666666676666666665333222233333333221
Q ss_pred -c---------------Cc---HHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 041804 260 -N---------------GR---VREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVML 320 (403)
Q Consensus 260 -~---------------g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (403)
. .+ ..+|+..|+++.+. -|+..- ..+|...+..+... .- ..--.+
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~y----------a~~A~~rl~~l~~~---la-~~e~~i 181 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQY----------TTDATKRLVFLKDR---LA-KYELSV 181 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChh----------HHHHHHHHHHHHHH---HH-HHHHHH
Confidence 1 11 23444555555543 233211 22333322222211 00 111245
Q ss_pred HHHHHhcCCcchHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 321 LRKFGRWGFLRPVFVVWKKMEEL--GCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
.+.|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..++|..+...+..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 67789999999999999999875 3344566777888999999999999988776643
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.88 E-value=0.00034 Score=51.35 Aligned_cols=97 Identities=9% Similarity=-0.055 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHH
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNM 147 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (403)
...-.+...+...|++++|.++|+-+...++.+..-|-.|.-++-..|++++|...|..... -.+.+...+..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-------L~~ddp~~~~~ 108 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-------IKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCCchHHHH
Confidence 34445566667788888888888888888877888888888888888888888888877766 33566777778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 041804 148 ILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 148 l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
+..++...|+.+.|.+.|+.....
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888776654
No 173
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.005 Score=48.93 Aligned_cols=220 Identities=10% Similarity=0.053 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcH----------------HHHH-HHHHH--HHhcCCHHHHHHHHhccc
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE----------------VSYC-NLVDA--LCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~-~l~~~--~~~~~~~~~a~~~~~~~~ 128 (403)
..|..-+.++.+.+.+++|..-++...+.+.++- ..|. .++.+ ....|...+.+.-+..+.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3566667778888888888877776655443211 0011 11111 112444444333332222
Q ss_pred ccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 041804 129 KNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI 208 (403)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (403)
.. ..-.++.+-.....+...+.|++-... ..+.++.++.-.+.+.-...++.+.++...
T Consensus 150 ~~--------------V~~ii~~~e~~~~~ESsv~lW~KRl~~-------Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 150 TV--------------VSKILANLEQGLAEESSIRLWRKRLGR-------VMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HH--------------HHHHHHHHHhccchhhHHHHHHHHHHH-------HHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 11 111222222222234445555554332 445556666666666666777777766655
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCC-CCCh
Q 041804 209 KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS-----VVTCNTVIKLLCENGRVREAYAVLAEMPKKGC-VPDV 282 (403)
Q Consensus 209 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~ 282 (403)
+.++.....|.+.-.+.||.+.|...|+...+..-..+ ..+.......|.-++++..|...+.++..... .|-.
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 55666666666666677777777777776554422222 22233333445556666677777766654321 1111
Q ss_pred hhHHHHHHhh-CCHHHHHHHHHHHHHc
Q 041804 283 ITYHCFFRCL-EKPREILGLFDRMIES 308 (403)
Q Consensus 283 ~~~~~l~~~~-~~~~~a~~~~~~~~~~ 308 (403)
..-.+++..| ++..+|++.++.|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1112333333 6667777777777664
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00052 Score=52.94 Aligned_cols=104 Identities=19% Similarity=0.370 Sum_probs=68.3
Q ss_pred CCChhhHHHHHHHHhh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChh
Q 041804 209 KMDVVAYNTVIRAVGV-----SEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVI 283 (403)
Q Consensus 209 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 283 (403)
.-|..+|..++..|.+ .|.++-....++.|.+.|+.-|..+|+.|++.+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 3466777777777653 35666677777777777777777777777766543 3221 111
Q ss_pred hHHHHHHhh-CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 041804 284 TYHCFFRCL-EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGF 329 (403)
Q Consensus 284 ~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (403)
.+-++...+ .+.+-|++++++|...|+-||..++..+++.|++.+.
T Consensus 107 ~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111122222 2345688999999999999999999999998887664
No 175
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.81 E-value=0.0047 Score=48.93 Aligned_cols=188 Identities=10% Similarity=0.071 Sum_probs=93.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP-NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLV 108 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~ 108 (403)
...+-.....+...|++.+|...|+.+....+..| ...+.-.++.++.+.|+++.|...+++..+..|. ....+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 34444556777788999999999998887642222 2345667788888889999999999998887766 222333333
Q ss_pred HHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
.+.+......... ...... .....-...+..++.-|=.+.-..+|...+..+.+. =...--.+...|.
T Consensus 85 ~g~~~~~~~~~~~----~~~~D~----~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 85 LGLSYYKQIPGIL----RSDRDQ----TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHHH-----TT-------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHhCccch----hcccCh----HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3332211111110 000000 000011122444444444455555555544444322 0111122455667
Q ss_pred HcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHHhhcCCHHH
Q 041804 189 KSGKPWKAVKLYKEMKKK--GIKMDVVAYNTVIRAVGVSEGVDF 230 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~ 230 (403)
+.|.+..|..-++.+++. +.+........++.+|.+.|..+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 777777777777776665 111112244555566666666553
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0016 Score=53.04 Aligned_cols=101 Identities=7% Similarity=-0.000 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCChhhH
Q 041804 139 MNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG---KPWKAVKLYKEMKKKGIKMDVVAY 215 (403)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 215 (403)
+.|...|-.|...|...|+.+.|..-|....+...+ +...+..+..++.... ...++.++|+++...+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 334444444444444445544444444444443322 3333444433333222 1234444444444442 2233344
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 216 NTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
..|...+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44444444455555555555554443
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0069 Score=50.87 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=41.4
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHh----CCCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-----Chh-h
Q 041804 147 MILRGWFKM-SWWGKCREFWEEMDK----RGVV-KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKM-----DVV-A 214 (403)
Q Consensus 147 ~l~~~~~~~-~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~ 214 (403)
.+...|-.. |+++.|.+.|++..+ .+.. --...+..+...+.+.|++++|.++|++....-... +.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344444444 556666665555432 1100 012334455556666666666666666655432111 111 1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 215 YNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 215 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
+-..+-++...||+..|.+.++....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11222233445666666666665554
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.0077 Score=50.59 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCC----C--cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGL----K--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
|......|...|++++|.+.|.+..+... + -...|.....+|.+. ++++|...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~-------------------- 96 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC-------------------- 96 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH--------------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH--------------------
Confidence 34445566677777777777766543211 1 112233333333222 55555444
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-CChhHHHHHHHHHHHc----CCCCC--hhhHH
Q 041804 144 IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS-GKPWKAVKLYKEMKKK----GIKMD--VVAYN 216 (403)
Q Consensus 144 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~ 216 (403)
|...+..|...|++..|-+.+..+- ..|... |++++|++.|++..+. + .+. ..++.
T Consensus 97 -~~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~ 159 (282)
T PF14938_consen 97 -YEKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLL 159 (282)
T ss_dssp -HHHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred -HHHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHH
Confidence 4445566777777777766655543 445555 7888888888886553 2 111 23556
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 217 TVIRAVGVSEGVDFAMRVYREMREMGCQP-----SVV-TCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 217 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
.+...+.+.|++++|..+|+++....... +.. .+-..+-++...||...|.+.|++....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67778889999999999999887653221 221 2333444666788999999999887643
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.004 Score=47.93 Aligned_cols=90 Identities=13% Similarity=-0.047 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 041804 140 NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD--LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNT 217 (403)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (403)
.....+..+...+...|++++|...|++..+....++ ...+..+..++.+.|++++|...+++..+.. +-+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3455677788888888999999999988876544332 3577888888888999999999888888763 224555666
Q ss_pred HHHHHhhcCCHHH
Q 041804 218 VIRAVGVSEGVDF 230 (403)
Q Consensus 218 ll~~~~~~~~~~~ 230 (403)
+..++...|+...
T Consensus 112 lg~~~~~~g~~~~ 124 (172)
T PRK02603 112 IAVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHHcCChHh
Confidence 6666666666433
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.74 E-value=0.0015 Score=50.15 Aligned_cols=82 Identities=11% Similarity=-0.059 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK--DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV 218 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 218 (403)
....+..+...+...|++++|...|++.......| ...++..+..++...|++++|++.++...... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34556666666777777777777777776543222 22466667777777777777777777766542 2223344444
Q ss_pred HHHHh
Q 041804 219 IRAVG 223 (403)
Q Consensus 219 l~~~~ 223 (403)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.74 E-value=0.00024 Score=44.95 Aligned_cols=51 Identities=18% Similarity=-0.000 Sum_probs=32.3
Q ss_pred hcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 79 TAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
..|++++|+++|+++....+.+..++..+..+|.+.|++++|..+++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666655666666666666666666666666666655
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.003 Score=51.26 Aligned_cols=88 Identities=13% Similarity=-0.048 Sum_probs=79.6
Q ss_pred HHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHH
Q 041804 40 ILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIE 119 (403)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (403)
-+.+.+++++|+..|.+..+.. +.|.+.|..-..+|.+.|.++.|++-.+.....++....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4567889999999999999975 46778888899999999999999999999999988899999999999999999999
Q ss_pred HHHHHhcccc
Q 041804 120 AQELCFGENK 129 (403)
Q Consensus 120 a~~~~~~~~~ 129 (403)
|...|++...
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999988775
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=0.00023 Score=44.50 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=34.4
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL 98 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 98 (403)
...+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 445556666666666666666654 22445566666666666666666666666655444
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.70 E-value=0.00019 Score=45.43 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=30.6
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCC
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 61 (403)
.+|++++|++.|+.+... .+.+..++..+..+|.+.|++++|..+++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356666666666665532 23355555566666666666666666666666643
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.66 E-value=0.00042 Score=43.32 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=43.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 148 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
+...+.+.|++++|.+.|+++.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677778888888888888777655 7777777777888888888888888877665
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.64 E-value=0.0052 Score=46.12 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=101.2
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcC
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYK 115 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 115 (403)
+.....+.=+++...+-..+-... -|+....-.|..+....|+..+|...|.+...--.. |......+.++....+
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 344444444444443333333332 366666677888888888888888888887764444 8888888888888888
Q ss_pred CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhH
Q 041804 116 HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWK 195 (403)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (403)
++..+...++++.+... .+..|+ ..-.+.+.+...|.+.+|+..|+.....-..|....| ....+.+.|+.++
T Consensus 139 ~~A~a~~tLe~l~e~~p---a~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~e 211 (251)
T COG4700 139 EFAAAQQTLEDLMEYNP---AFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLRE 211 (251)
T ss_pred cHHHHHHHHHHHhhcCC---ccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhH
Confidence 88888888887765431 122333 3455667788888888888888888887444433333 3344566776665
Q ss_pred HHHHHHHH
Q 041804 196 AVKLYKEM 203 (403)
Q Consensus 196 a~~~~~~~ 203 (403)
+..-+..+
T Consensus 212 a~aq~~~v 219 (251)
T COG4700 212 ANAQYVAV 219 (251)
T ss_pred HHHHHHHH
Confidence 55444443
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0087 Score=47.65 Aligned_cols=134 Identities=9% Similarity=-0.024 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHH
Q 041804 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149 (403)
Q Consensus 71 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (403)
+.++.++.-.|.+.-...+++++.+..++ ++.....|++.-.+.|+.+.|...|++..+..+.-+ +..-+..+.....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~-~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD-GLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh-ccchhHHHHhhhh
Confidence 34555555566666677777777776655 777777777777777777777777665443210000 1122222223333
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
..|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445556666666666666665544 5555555444555566666676666666665
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.036 Score=50.56 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041804 317 YVMLLRKFGRWGFLRPVFVVWKKMEEL-GCSPDEFAYNALVDALIDKGMLDMARKYDEEM 375 (403)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 375 (403)
|-+|.+--...|.++.|.+.--.+.+. .+-|....|..+.-+-+....+.-.-+.|-++
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 344444455667777777765555432 45577777877665544444444333333333
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.59 E-value=0.00035 Score=44.29 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhc
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH-LVNEAMGTFNKLDEF 96 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 96 (403)
+.+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4455555566666666666666666655543 234445555556666665 466666666555543
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.021 Score=48.66 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=32.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041804 75 KRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELC 124 (403)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (403)
..+.+..++..|+..+....+..+.+..-|..-...+...++++++..-.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~da 106 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDA 106 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccch
Confidence 44555666777777777777777666666666666666666666655443
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0078 Score=54.81 Aligned_cols=136 Identities=10% Similarity=-0.064 Sum_probs=80.3
Q ss_pred cCcchHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC--------hhHHHHHHHHHH
Q 041804 138 EMNKTKIYNMILRGWFKM-----SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK--------PWKAVKLYKEMK 204 (403)
Q Consensus 138 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~ 204 (403)
.+.+...|...+++.... ++...|..+|++..+..+. ....|..+..++..... ...+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 355667777777665432 2256777778877776544 44555554444433211 122222233222
Q ss_pred Hc-CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 205 KK-GIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 205 ~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
.. ....+...+..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 21 123344556655555556677888888888777753 56677777777777788888888777776654
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.012 Score=41.77 Aligned_cols=106 Identities=9% Similarity=-0.023 Sum_probs=63.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHH
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKD--LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD----VVAYNTVIR 220 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~ 220 (403)
.+..++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|..++++....- |+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence 344556667777778877777777765533 3455566667777777777777777776551 22 122222334
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 041804 221 AVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLC 258 (403)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 258 (403)
++...|+.++|...+-..... +...|.--|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 555677777777776554432 3334554444443
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0049 Score=50.26 Aligned_cols=126 Identities=9% Similarity=0.007 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcC---ChhHH
Q 041804 85 EAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMS---WWGKC 161 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a 161 (403)
....-++.-...++.|...|-.|...|...|+...|...|.+..+ -.++|...+..+..++.... ...++
T Consensus 140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-------L~g~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 140 ALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR-------LAGDNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence 333444555666767999999999999999999999999988877 44666777777776665543 46788
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 041804 162 REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIR 220 (403)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 220 (403)
..+|+++...+.. |+.+...|...+...|++.+|...|+.|.+.. + ....+..++.
T Consensus 213 ~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p-~~~~rr~~ie 268 (287)
T COG4235 213 RALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-P-ADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-C-CCCchHHHHH
Confidence 8999999988777 88888888888999999999999999999873 3 3334444444
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.007 Score=42.86 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=27.9
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 75 KRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
.++-..|+.++|+.+|++....|+. ....+..+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555544 123444445555555555555555554443
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.04 Score=46.70 Aligned_cols=300 Identities=14% Similarity=0.099 Sum_probs=192.3
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH--HhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 69 TFRIMFKRYVT--AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDAL--CEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 69 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
-|..|-.++.. .|+-..|.++-.+..+.=..|...+..++.+- .-.|+.+.|.+-|+.|.... +....-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-------EtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-------ETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-------HHHHHh
Confidence 35566655554 46777777766655433223666666665543 45899999999999987641 111112
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCChh--hHHHHHHH
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG-IKMDVV--AYNTVIRA 221 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~ll~~ 221 (403)
...|.-..-+.|+.+.|..+-+..-..-.. -...+...+...+..|+++.|+++++.-+... +.++.. .-..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 333444445778899999888887776555 45678889999999999999999998876552 333432 22233332
Q ss_pred Hh---hcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHH
Q 041804 222 VG---VSEGVDFAMRVYREMREMGCQPSVVTC-NTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPRE 297 (403)
Q Consensus 222 ~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 297 (403)
-. -..+...|...-.+..+ +.|+..-- -.-..++.+.|+..++-.+++.+-+....|+ .+.....+-. .+.
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~-gdt 310 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARS-GDT 310 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcC-CCc
Confidence 21 12345566665555554 35554332 2335788999999999999999988744444 4443333321 122
Q ss_pred HHHHHHHHHH-cCCCC-chhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 041804 298 ILGLFDRMIE-SGIRP-KMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALI-DKGMLDMARKYDEE 374 (403)
Q Consensus 298 a~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~ 374 (403)
+..-+++... ..++| +..+...+..+-...|++..|..--+...+. .|....|-.|.+.-. ..|+-.++..++-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 2222222221 12334 4466677788888999999998877777664 688889988887654 45999999999998
Q ss_pred HHHcCCCCC
Q 041804 375 MFAKGLSAK 383 (403)
Q Consensus 375 m~~~~~~p~ 383 (403)
.++.--.|.
T Consensus 389 av~APrdPa 397 (531)
T COG3898 389 AVKAPRDPA 397 (531)
T ss_pred HhcCCCCCc
Confidence 887655554
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.52 E-value=0.00045 Score=43.82 Aligned_cols=64 Identities=23% Similarity=0.122 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHhcccc
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK-HVIEAQELCFGENK 129 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 129 (403)
+..+|..+...+...|++++|+..|++..+.++.+...|..+..++...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999889999999999999999 79999999887654
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.061 Score=45.98 Aligned_cols=265 Identities=11% Similarity=-0.003 Sum_probs=163.2
Q ss_pred HHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC
Q 041804 36 SVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK 115 (403)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (403)
.....+.+..++..|++.+....+.. +.+...|..-...+...+++++|+--.+.-.+.....+......-+++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 34445666778888888888888765 3455667777777778888888877776666655444555555555555555
Q ss_pred CHHHHHHHHhccc---------cccccc-ccccCcchHHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 041804 116 HVIEAQELCFGEN---------KNVGFS-GLVEMNKTKIYNMIL-RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYM 184 (403)
Q Consensus 116 ~~~~a~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (403)
+..+|...++.-. ...... ....+|....+..+- .++...|++++|..+--...+.+.. +......-.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg 210 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRG 210 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcc
Confidence 5555554443211 000000 001223334443332 4556678899998887777766433 333333333
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH-------------HHHHhhcCCHHHHHHHHHHHHHc---CCCCCHH
Q 041804 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV-------------IRAVGVSEGVDFAMRVYREMREM---GCQPSVV 248 (403)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 248 (403)
.++....+.+.+...|++.+.. .|+...-..+ -.-..+.|++..|.+.|.+.+.. +..|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 4555677888898888888765 3444322221 12234688899999999888765 3445666
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH------hhCCHHHHHHHHHHHHHcC
Q 041804 249 TCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR------CLEKPREILGLFDRMIESG 309 (403)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~------~~~~~~~a~~~~~~~~~~~ 309 (403)
.|........+.|+.++|+.--++..+- |..-.-.++. .++++++|.+-++...+..
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777777788889999998887776653 4444444433 2366788888877776543
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.41 E-value=0.032 Score=42.12 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=109.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 73 MFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 73 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
+..+..+.=+++...+-..+-.+.- ++......|..+..+.|+..+|...|.+.... ....|....-.+.++.
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~A-pTvqnr~rLa~al~elGr~~EA~~hy~qalsG------~fA~d~a~lLglA~Aq 134 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIA-PTVQNRYRLANALAELGRYHEAVPHYQQALSG------IFAHDAAMLLGLAQAQ 134 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhc-hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------ccCCCHHHHHHHHHHH
Confidence 3334444444444443333222221 24555667888899999999999999998875 5677888888899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 041804 153 FKMSWWGKCREFWEEMDKRGVV-KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFA 231 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 231 (403)
...+++..|...++.+-+.++. -++.+...+.+.+...|++.+|..-|+..... -|+..........+.+.|+.+++
T Consensus 135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHH
Confidence 9999999999999998876421 12335567788999999999999999999887 45555444445556677776665
Q ss_pred HHHHHHHH
Q 041804 232 MRVYREMR 239 (403)
Q Consensus 232 ~~~~~~~~ 239 (403)
..-+..+.
T Consensus 213 ~aq~~~v~ 220 (251)
T COG4700 213 NAQYVAVV 220 (251)
T ss_pred HHHHHHHH
Confidence 54444443
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.40 E-value=0.043 Score=43.50 Aligned_cols=182 Identities=13% Similarity=-0.035 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYN 146 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (403)
+-.....+...|++.+|.+.|+.+....+. ...+...++.++.+.|+++.|...+++..... +..|.. .+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~~~~~-~~A 81 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PNSPKA-DYA 81 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTH-HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcch-hhH
Confidence 334455667788888888888888876554 45566677788888888888888888776643 111111 122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVK---DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVG 223 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 223 (403)
..+.+.+......... ....+... -...+..++.-|=.+.-..+|...+..+... .-. .--.+...|.
T Consensus 82 ~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~-~e~~ia~~Y~ 152 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAE-HELYIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHH-HHHHHHHHHH
Confidence 2222221111111000 00000000 0112333333333334444454444444332 000 1122456677
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCcHHHH
Q 041804 224 VSEGVDFAMRVYREMREMGCQ--PSVVTCNTVIKLLCENGRVREA 266 (403)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a 266 (403)
+.|.+..|..-++.+.+.-.. ......-.++.+|.+.|..+.+
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 788888888888877776211 1123445566777777776644
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.40 E-value=0.0032 Score=51.76 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHH
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH----ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSY 104 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 104 (403)
..|...+..+.+.|++++|...|+.+.... |+. .++-.+..+|...|++++|...|+.+.+..+. ...++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 356666666677899999999999999865 543 57888999999999999999999999977655 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 105 CNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
..+..++...|+.++|...++.+...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67778888999999999999988764
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.0016 Score=48.54 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 041804 316 TYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA-----KGLSAKPREEL 388 (403)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 388 (403)
+...++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+..+|.++|+++.. .|+.|++.+.-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 56677788889999999999999998875 66889999999999999999999999998765 39999887654
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.0022 Score=54.31 Aligned_cols=268 Identities=10% Similarity=0.072 Sum_probs=161.2
Q ss_pred ccccccHHHHHHhhhhhcccCCC---cCCHHhHHHHHHHHHccCChhHHHHHHHHhhh----CCCCCCCHHHHHHHHHHH
Q 041804 5 SCYANDWKRALEFFNWVETDCHF---THTTDTYNSVIDILGKFFEFDLSWNLIHRMKD----NPSSIPNHATFRIMFKRY 77 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~ 77 (403)
+++.|+...-+.+|+...+ -|. +.-..+|..|..+|.-.+++++|+++...=.. .+...-...+...|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~q-vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQ-VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHH-hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 4667899999999998885 332 22245677888888888899999887542110 010011222334555666
Q ss_pred HhcCChHHHHHHHHHH----hhcCCC--cHHHHHHHHHHHHhcCC--------------------HHHHHHHHhcccccc
Q 041804 78 VTAHLVNEAMGTFNKL----DEFGLK--DEVSYCNLVDALCEYKH--------------------VIEAQELCFGENKNV 131 (403)
Q Consensus 78 ~~~~~~~~a~~~~~~~----~~~~~~--~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~~ 131 (403)
--.|.+++|+-+-.+- .+.|-. ...++-.+...|...|. ++.|.+.|.+-.+..
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888876654432 333333 45566677777765543 222333332211100
Q ss_pred cccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 132 GFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEM----DKRGV-VKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
...+ .......+|..|.+.|.-.|+++.|+..-+.- .+.|- ..-..++..+.+++.-.|+++.|.+.|+.....
T Consensus 186 ~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 186 EKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 0000 00111233555666666678899987765432 22221 123457788889999999999999998875432
Q ss_pred ----CC-CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 207 ----GI-KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM-----GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 207 ----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
|- ......+-+|...|.-..+++.|+.++..-... ...-....+.+|..+|...|..++|+.+...-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 223345567788888888899998887754321 122356788889999999999999988776543
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.28 E-value=0.0067 Score=49.86 Aligned_cols=99 Identities=8% Similarity=-0.082 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD---EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
.|......+.+.|++++|+..|+.+.+..+.+ +.++..+..+|...|++++|...|..+....+ ..+....++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP----~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP----KSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CCcchhHHH
Confidence 34444444445566666666666666655542 34555566666666666666666665554211 112223333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
..+...+...|+.++|.++|+.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.0026 Score=47.49 Aligned_cols=57 Identities=11% Similarity=0.231 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEM 203 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 203 (403)
..++..+...|+++.|.++.+.+....+- |...|..+|.+|...|+...|.+.|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444455555555555555555555444 5555555555555555555555555554
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.21 E-value=0.0029 Score=40.57 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=30.8
Q ss_pred HHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 041804 40 ILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 99 (403)
+|.+.+++++|.++++.+...+ +.+...|.....++...|++++|.+.|+...+.++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4455555555555555555543 233444555555555555555555555555555443
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.0046 Score=39.58 Aligned_cols=56 Identities=9% Similarity=-0.005 Sum_probs=38.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
..|.+.+++++|.++++.+...++. +...|.....++...|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566667777777777777766555 6666666667777777777777777776655
No 207
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.01 E-value=0.16 Score=42.56 Aligned_cols=16 Identities=13% Similarity=-0.076 Sum_probs=11.1
Q ss_pred HHhcCcHHHHHHHHHh
Q 041804 257 LCENGRVREAYAVLAE 272 (403)
Q Consensus 257 ~~~~g~~~~a~~~~~~ 272 (403)
+.+.++++.|.+.|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4467778888777764
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.99 E-value=0.015 Score=41.67 Aligned_cols=46 Identities=4% Similarity=-0.025 Sum_probs=20.8
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 041804 209 KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM-GCQPSVVTCNTVI 254 (403)
Q Consensus 209 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li 254 (403)
.|+..+..+++.+|+..+++..|.++++...+. +++.+..+|..|+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344444444444444444444444444444332 3333344444444
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.97 E-value=0.03 Score=47.70 Aligned_cols=60 Identities=13% Similarity=-0.001 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 214 AYNTVIRAVGVSEGVDFAMRVYREMR----EMGCQ-PSVVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 214 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
.|..|-..|.-.|+++.|....+.-. +.|-. ..-..+..+..++.-.|+++.|.+.|+.-
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 45555556666778888877665432 22211 12345666777777788888888877653
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.96 E-value=0.019 Score=41.13 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=70.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhh--------------hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMK--------------DNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 95 (403)
|..++..+|.++++.|+++....+++..- ...+..|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 46788999999999999999999988642 2234578999999999999999999999999998866
Q ss_pred c-CCC-cHHHHHHHHHHHHhcC
Q 041804 96 F-GLK-DEVSYCNLVDALCEYK 115 (403)
Q Consensus 96 ~-~~~-~~~~~~~l~~~~~~~~ 115 (403)
. +++ +..+|..|+.-+...-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 4 455 8899999988765443
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.95 E-value=0.0023 Score=41.71 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc-chHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 102 VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN-KTKIYNMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
.+++.+..+|...|++++|+..+++........+ ...| ...+++.+...|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-DDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566666666667777766666655543211111 1122 255677788888888888888888877653
No 212
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.94 E-value=0.05 Score=38.49 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=84.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHH
Q 041804 224 VSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFD 303 (403)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~ 303 (403)
..|.+++..++..+.... .+..-+|.+|--....-+-+-..++++.+-.- -| +..|++.......+-
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD-------is~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD-------ISKCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--------GGG-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------chhhcchHHHHHHHH
Confidence 457777777777777764 35556666665555444444444554443321 12 122344444333332
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 041804 304 RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381 (403)
Q Consensus 304 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 381 (403)
.+ ..+...+...+......|+-+.-.+++..+.+.+ .+++...-.+..||.+.|+..++.+++.+.-++|++
T Consensus 81 ~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 81 KR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred Hh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 22 2355667788888999999999999999987644 788999999999999999999999999999999874
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.89 E-value=0.004 Score=40.54 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDN----PSSIPN-HATFRIMFKRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 95 (403)
..+++.+..+|...|++++|++.|++..+. +...|+ ..+++.+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346777777788888888888777766532 111122 34566777777777777777777776543
No 214
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.89 E-value=0.032 Score=49.70 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=98.2
Q ss_pred HHHHccCChhHHHHHHH--HhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC
Q 041804 39 DILGKFFEFDLSWNLIH--RMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH 116 (403)
Q Consensus 39 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (403)
....-.++++++.++.+ ++... .| ....+.++..+-+.|..+.|+++..+ +. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~---i~-~~~~~~i~~fL~~~G~~e~AL~~~~D--------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN---IP-KDQGQSIARFLEKKGYPELALQFVTD--------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS---------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhccc---CC-hhHHHHHHHHHHHCCCHHHHHhhcCC--------hH---HHhHHHHhcCC
Confidence 44455688888766665 22221 12 44577788888888888888876533 22 23344567788
Q ss_pred HHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHH
Q 041804 117 VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKA 196 (403)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 196 (403)
++.|.++.++. ++...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+.-
T Consensus 334 L~~A~~~a~~~------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 334 LDIALEIAKEL------------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCCCC------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHhc------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHH
Confidence 88888775432 355678888888888888888888888765 355666677778888877
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 041804 197 VKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238 (403)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 238 (403)
.++.+.....|- ++....++...|+.++..+++...
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777777776651 345555666678888877777654
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.88 E-value=0.15 Score=46.34 Aligned_cols=263 Identities=15% Similarity=0.130 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
.+.+-+..|...|.+++|.++- -.|+ ...-|.-|.......=+++-|.+.+.+....
T Consensus 558 p~~~~m~q~Ieag~f~ea~~ia----clgV-v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------------ 614 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIA----CLGV-TDTDWRELAMEALEALDFETARKAYIRVRDL------------------ 614 (1081)
T ss_pred cccccchhhhhccchhhhhccc----ccce-ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc------------------
Confidence 3444556677777777775431 1111 3333444444433444444444444333221
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC----CCChhhHHHHHHHHhh
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI----KMDVVAYNTVIRAVGV 224 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~ 224 (403)
.+-+...-++++.++|-.|+... +...++-.|++.+|-++|.+--..+- -.|...| -+.+-+..
T Consensus 615 --------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~ 682 (1081)
T KOG1538|consen 615 --------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLG 682 (1081)
T ss_pred --------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhh
Confidence 12233444567778887777643 34456667777777777754221100 0011111 12333444
Q ss_pred cCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHh------chhcCCCCC---hhhHHHH---HH
Q 041804 225 SEGVDFAMRVYREMREM--GCQPSVVTCNTVIKLLCENGRVREAYAVLAE------MPKKGCVPD---VITYHCF---FR 290 (403)
Q Consensus 225 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------~~~~~~~p~---~~~~~~l---~~ 290 (403)
.|+.++-..+.++-.+. .++-. .+....+..+|+..+|..+..+ +.+-+.+.| ..+...+ +.
T Consensus 683 ~g~~~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk 758 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLK 758 (1081)
T ss_pred cCChHHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHh
Confidence 45544444444332222 11111 1233445567777777765432 111111222 2222222 22
Q ss_pred hhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHH-----------HHHHHHHHH
Q 041804 291 CLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEF-----------AYNALVDAL 359 (403)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~ 359 (403)
....+.-|-++|.+|-+ ...++......+++++|..+-++..+. .||.. -|.-.-.+|
T Consensus 759 ~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHH
Confidence 22334556677776643 235677888899999999988877653 33322 344556789
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC
Q 041804 360 IDKGMLDMARKYDEEMFAKGLS 381 (403)
Q Consensus 360 ~~~g~~~~a~~~~~~m~~~~~~ 381 (403)
.++|+..+|.++++++....+.
T Consensus 828 hkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HHhcchHHHHHHHHHhhhhhhh
Confidence 9999999999999998876543
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.4 Score=44.20 Aligned_cols=206 Identities=10% Similarity=0.034 Sum_probs=107.0
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHH----------HHHHhcCChHHHHHHHHHHhhcC
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMF----------KRYVTAHLVNEAMGTFNKLDEFG 97 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~ 97 (403)
.|.+..|..+.......-.++.|...|-+...- |.......|- ..-+--|.+++|+++|-++.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY----~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY----AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc----cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 466677777766666666666666666554432 2221111111 11122367777777776665533
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 041804 98 LKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL 177 (403)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 177 (403)
..+..+.+.|++-...++++.--... ....-..+|+.+...+.....|++|.+.+..-.. .
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~-----dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~ 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDD-----DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h
Confidence 23444555666666666554322111 2222344566666666666666666666654321 1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041804 178 HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLL 257 (403)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 257 (403)
...+.++.+..++++-..+-+. ++-+....-.+..++.+.|.-++|.+.|-+... | -+.+.+|
T Consensus 826 ---e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tC 888 (1189)
T KOG2041|consen 826 ---ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTC 888 (1189)
T ss_pred ---HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHH
Confidence 1234455555444444333332 233444555666677777777766665533211 1 1345566
Q ss_pred HhcCcHHHHHHHHHhc
Q 041804 258 CENGRVREAYAVLAEM 273 (403)
Q Consensus 258 ~~~g~~~~a~~~~~~~ 273 (403)
...++|.+|.++-++.
T Consensus 889 v~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666777776666554
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.80 E-value=0.021 Score=42.45 Aligned_cols=95 Identities=6% Similarity=-0.186 Sum_probs=81.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
......-+-..|++++|..+|.-+.-.+ +-+..-|..|..++-..+++++|+..|...-..+..|+..+-....++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 3344556678999999999999988866 35666788888899999999999999999988887788889999999999
Q ss_pred cCCHHHHHHHHhccccc
Q 041804 114 YKHVIEAQELCFGENKN 130 (403)
Q Consensus 114 ~~~~~~a~~~~~~~~~~ 130 (403)
.|+.+.|...|......
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999998877663
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.74 E-value=0.32 Score=41.97 Aligned_cols=80 Identities=9% Similarity=-0.073 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCChhhHHHHHHHHhh---cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKG---IKMDVVAYNTVIRAVGV---SEGVDFAMRVYREMREMGCQPSVVTCNT 252 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (403)
+...++-+|....+++..+++++.+.... +.-...+-....-++.+ .|+.+.|++++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33345556777778888888888877651 11122222334445556 7788888888887666556667777777
Q ss_pred HHHHHH
Q 041804 253 VIKLLC 258 (403)
Q Consensus 253 li~~~~ 258 (403)
+.+.|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 666653
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.69 E-value=0.33 Score=41.44 Aligned_cols=284 Identities=12% Similarity=0.071 Sum_probs=166.7
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHH--HHccCChhHHHHHHHHhhhCCCCCCCHHH--HHHHHHHHHh
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDI--LGKFFEFDLSWNLIHRMKDNPSSIPNHAT--FRIMFKRYVT 79 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 79 (403)
|..-.|+-..|.+.-....+ -+.-|..-.-.++.+ -.-.|+++.|.+-|+.|... |.... ...|.-.--+
T Consensus 93 iAagAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr 166 (531)
T COG3898 93 IAAGAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQR 166 (531)
T ss_pred hhhccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHh
Confidence 34445777777776655442 123333334444433 34579999999999999874 44332 2334444457
Q ss_pred cCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH--HHHHHHHHHh---
Q 041804 80 AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI--YNMILRGWFK--- 154 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~--- 154 (403)
.|..+.|.+.-+..-..-+.-...+..++...+..|+++.|+++++.-.... .+.++..- -..|+.+-..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~-----vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK-----VIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----hhchhhHHHHHHHHHHHHHHHHh
Confidence 8999999999998888777788899999999999999999999988755432 22333221 1222222111
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 041804 155 MSWWGKCREFWEEMDKRGVVKDLH-SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMR 233 (403)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 233 (403)
..+...|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+....|+. + .+-.+.+.|+. +..
T Consensus 242 dadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~d 313 (531)
T COG3898 242 DADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALD 313 (531)
T ss_pred cCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHH
Confidence 12344444444444332 33332 2334456788888898888888888887544443 2 22223345543 333
Q ss_pred HHHHHHHc-CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHh----hCCHHHHHHHHHHHHH
Q 041804 234 VYREMREM-GCQP-SVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRC----LEKPREILGLFDRMIE 307 (403)
Q Consensus 234 ~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~~~a~~~~~~~~~ 307 (403)
-++...+. ..+| +..+.-.+..+-...|++..|..--+...+. .|....|..|-.. -|+.+++..++-+...
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 33333221 1233 3455556667777788887777665555443 4555445444321 1556667666666665
Q ss_pred c
Q 041804 308 S 308 (403)
Q Consensus 308 ~ 308 (403)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.65 E-value=0.38 Score=41.58 Aligned_cols=172 Identities=10% Similarity=-0.054 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCc
Q 041804 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK---MSWWGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~ 176 (403)
+..+...++-+|....+++...++++.+...... .......+-....-++.+ .|+.++|.+++..+......++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence 6667778888899999999999999988764211 122233444455566666 8999999999999777667778
Q ss_pred HHHHHHHHHHHHHc---------CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC-H---HHHHHHH---HH-HH
Q 041804 177 LHSYSIYMDIMCKS---------GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG-V---DFAMRVY---RE-MR 239 (403)
Q Consensus 177 ~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~---~~a~~~~---~~-~~ 239 (403)
..+|..+...|-.. ...++|+..|.+.-+. .||.++=-.++..+...|. . .+..++- .. +.
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 88999988877431 2366788888776654 3555432222222222232 1 1222222 11 12
Q ss_pred HcCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 240 EMGC---QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 240 ~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
+.|. ..+-..+.+++.++.-.|+.++|.+..+.|...
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2332 235556677888888899999999999998866
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.64 E-value=0.1 Score=44.39 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
+.+..+.-+...|+...|.++-.+. .+++...|-..+.+++..++|++-.++... ..++.-|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------------kKsPIGyepF 243 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKALAENKDWDELEKFAKS------------KKSPIGYEPF 243 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------------CCCCCChHHH
Confidence 4556677778889988888876544 557889999999999999999988876432 1223557888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLY 200 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 200 (403)
+..|.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 244 v~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 244 VEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 89999999999999888772 2245677888899998887653
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.64 E-value=0.071 Score=46.64 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcH---HHHHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE---VSYCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
+...|+.+..+|...|++++|+..|++..+..+.+. .+|..+..+|...|+.++|...+++...
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677777777777777777777777777766644 3477777777777777777777766654
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.032 Score=47.56 Aligned_cols=126 Identities=17% Similarity=0.038 Sum_probs=82.3
Q ss_pred HHHHHccCChhHHHHHHHHhhhCC----CCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNP----SSIP---------NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSY 104 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 104 (403)
...+.+.|++..|...|++....- ...+ -..+++.+..+|.+.+++..|++.-++.+..++.+....
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 446778888888888887754321 0111 122566777778888888888888888888887788777
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChh-HHHHHHHHHHh
Q 041804 105 CNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWG-KCREFWEEMDK 170 (403)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~ 170 (403)
-.-..++...|+++.|...|+++.+ ..|.|..+-+.++..-.+..... ...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k-------~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK-------LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7778888888888888888877776 33445455555555444443333 23555655543
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.31 Score=44.28 Aligned_cols=164 Identities=12% Similarity=-0.079 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHH------HHHHHHHHHHh----cCCHHHHHHHHhccccccccccccc
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEV------SYCNLVDALCE----YKHVIEAQELCFGENKNVGFSGLVE 138 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (403)
+..++...+=.||-+.+++.+....+.+-- .+. .|...+..++. ....+.+.+++..+... .
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-------y 263 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-------Y 263 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-------C
Confidence 345666666677777777777776553321 222 23333333332 34667777777777763 2
Q ss_pred CcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 041804 139 MNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG---VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAY 215 (403)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (403)
|.+....-.-.+.+...|++++|.+.|+...... .+.....+--+.-++.-..+|++|.+.|..+.+.. ..+..+|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 3333333444456666788888888888654321 12233345556667777888888888888888763 3344555
Q ss_pred HHHHHHH-hhcCCH-------HHHHHHHHHHHHc
Q 041804 216 NTVIRAV-GVSEGV-------DFAMRVYREMREM 241 (403)
Q Consensus 216 ~~ll~~~-~~~~~~-------~~a~~~~~~~~~~ 241 (403)
.-+..+| ...++. ++|..+|.+....
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 5444433 345555 7888888877643
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.62 E-value=0.42 Score=41.68 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH-HHHH
Q 041804 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKRG-VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAY-NTVI 219 (403)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 219 (403)
+.+|...++.-.+..-.+.|..+|-+..+.+ +.+++..++++|..++ .|++.-|..+|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567788888888888999999999999988 6788889999998664 57888999999886655 3344433 4456
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh
Q 041804 220 RAVGVSEGVDFAMRVYREMREMGCQPS--VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL 292 (403)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 292 (403)
..+...++-+.|..+|+..... +..+ ...|..+|.--..-|+...+..+=++|.+. .|...+...+...+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 6667889999999999966654 2223 567888998888999998888887777764 45554544444444
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.064 Score=42.44 Aligned_cols=227 Identities=12% Similarity=0.059 Sum_probs=105.4
Q ss_pred cHHHHHHhhhhhcccCCCcCC----HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 10 DWKRALEFFNWVETDCHFTHT----TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
+..++.+....-.. .++|| ...|..-..+|....++++|..-+.+..+-- ..+...| .... .++.
T Consensus 8 ki~ea~e~~a~t~~--~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslf-hAAK------ayEq 76 (308)
T KOG1585|consen 8 KISEADEMTALTLT--RWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLF-HAAK------AYEQ 76 (308)
T ss_pred HHHHHHHHHHHHhh--ccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHH-HHHH------HHHH
Confidence 34555555544332 14555 4567777888888999999998777765311 1222212 1122 2233
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
|.-+.+++.+.. .-...+.-....|...|.++.|-..+++..+.. +.-++++|++++
T Consensus 77 aamLake~~kls-Evvdl~eKAs~lY~E~GspdtAAmaleKAak~l----------------------env~Pd~AlqlY 133 (308)
T KOG1585|consen 77 AAMLAKELSKLS-EVVDLYEKASELYVECGSPDTAAMALEKAAKAL----------------------ENVKPDDALQLY 133 (308)
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh----------------------hcCCHHHHHHHH
Confidence 333333333211 022234444455666666655555444432210 111223333333
Q ss_pred HHHHh---CC--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHhhcCCHHHHHHHH
Q 041804 166 EEMDK---RG--VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK----GIKMDV-VAYNTVIRAVGVSEGVDFAMRVY 235 (403)
Q Consensus 166 ~~~~~---~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~ 235 (403)
++... .+ ...-...+...-..+.+..++++|-..+.+-... .--++. ..|...|-.+.-..++..|.+.+
T Consensus 134 qralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 134 QRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 32210 00 0011123333344455555555554443332111 111222 23444555555666777777777
Q ss_pred HHHHHcC---CCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041804 236 REMREMG---CQPSVVTCNTVIKLLCENGRVREAYAVLA 271 (403)
Q Consensus 236 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (403)
+.-.+.+ -.-+..+...|+.+| ..|+.+.+.+++.
T Consensus 214 r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 214 RDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 7654432 122455666666666 4566666666554
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=96.61 E-value=0.017 Score=42.86 Aligned_cols=92 Identities=15% Similarity=0.016 Sum_probs=69.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 73 MFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 73 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
...-+-..|++++|..+|.-+.-.++.+..-|..|..++-..+++++|...|...... ...|...+.....+|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-------~~~dp~p~f~agqC~ 115 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-------LKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccCCCCccchHHHHH
Confidence 3444567899999999999888888778888888888888888999988887654432 123344456677788
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041804 153 FKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~ 171 (403)
...|+.+.|...|+...+.
T Consensus 116 l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 116 LLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHhCCHHHHHHHHHHHHhC
Confidence 8888888888888877763
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.33 Score=39.90 Aligned_cols=143 Identities=10% Similarity=-0.002 Sum_probs=72.0
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 76 RYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
.....|++.+|..+|.......+.+...-..+..+|...|+.+.|..++..+.... ..........-+..+.+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~------~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA------QDKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc------hhhHHHHHHHHHHHHHHH
Confidence 34456666677777776666665566666666677777777777777666654431 111111112223333333
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhhcC
Q 041804 156 SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI-KMDVVAYNTVIRAVGVSE 226 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~ 226 (403)
....+...+-.+.-.. +. |...-..+...+...|+.+.|++.+-.+.+.+. --|...-..++..+.-.|
T Consensus 217 a~~~~~~~l~~~~aad-Pd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 217 AATPEIQDLQRRLAAD-PD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred hcCCCHHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333333333332 11 444555555666666666666665555544411 123334444444444444
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.50 E-value=0.056 Score=39.22 Aligned_cols=62 Identities=5% Similarity=-0.039 Sum_probs=28.9
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIP-NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 99 (403)
.....+.|++++|.+.|+.+..+-+..| ...+--.++.+|.+.++++.|...+++..+..|.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3444445555555555555554431111 1223334445555555555555555555555544
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.49 E-value=0.0084 Score=33.80 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
+|..+...|.+.|++++|+++|++..+..+.+...+..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666666666666666666666655665555443
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.43 E-value=0.46 Score=39.88 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=25.7
Q ss_pred HccCChhHHHHHHHHhhhCC-CCCCCHH------HHHHHHHHHHhcC-ChHHHHHHHHHHhh
Q 041804 42 GKFFEFDLSWNLIHRMKDNP-SSIPNHA------TFRIMFKRYVTAH-LVNEAMGTFNKLDE 95 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 95 (403)
.+.|+++.|..++.+..... ...|+.. .|+.-.. ....+ +++.|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHH
Confidence 35666777777766665533 1223322 2222222 22333 66666666655443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.42 E-value=0.17 Score=44.38 Aligned_cols=69 Identities=7% Similarity=-0.099 Sum_probs=60.4
Q ss_pred ccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 137 VEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL---HSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
..+.+...++.+..+|.+.|++++|...|++..+.++. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567788999999999999999999999999887655 33 46999999999999999999999999885
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.41 E-value=0.19 Score=45.63 Aligned_cols=160 Identities=13% Similarity=0.097 Sum_probs=80.1
Q ss_pred HhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHHHHHHHH-HH
Q 041804 112 CEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK----MSWWGKCREFWEEMDKRGVVKDLHSYSIYM-DI 186 (403)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~ 186 (403)
.-.|+-+.+++.+.+..+..+..+.-...-...|...+..++. ..+.+.|.++++.+.++ -|+...|...- +.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRL 276 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 3466777777777665553211111111111223444433333 33556677777777665 34444444332 34
Q ss_pred HHHcCChhHHHHHHHHHHHcC---CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCc
Q 041804 187 MCKSGKPWKAVKLYKEMKKKG---IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVI-KLLCENGR 262 (403)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~ 262 (403)
+...|++++|++.|+...... .+.....+--+.-.+.-..++++|...|..+.+.. ..+..+|..+. .++...|+
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhcc
Confidence 555677777777777654321 01122233334445556677777777777776642 12333333332 23334555
Q ss_pred H-------HHHHHHHHhch
Q 041804 263 V-------REAYAVLAEMP 274 (403)
Q Consensus 263 ~-------~~a~~~~~~~~ 274 (403)
. ++|.++|.+..
T Consensus 356 ~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred chhhhhhHHHHHHHHHHHH
Confidence 5 56666666544
No 234
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.37 E-value=0.31 Score=41.06 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhh--cC----CHHHHHHHHHHHHHc
Q 041804 195 KAVKLYKEMKKKGIKMDVVAYNTVIRAVGV--SE----GVDFAMRVYREMREM 241 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 241 (403)
+.+.+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 444556666666666665555443322222 11 234566666666655
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.18 Score=42.08 Aligned_cols=157 Identities=10% Similarity=-0.090 Sum_probs=111.9
Q ss_pred HhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC
Q 041804 78 VTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW 157 (403)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (403)
.-.|++.+|-..++++.+..|.|..++...=.+|.-.|+.+.....++++...... +.|-...+-..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~---dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA---DLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCC---CCcHHHHHHHHHHhhHHHhcc
Confidence 34678888888899999888779999998889999999998888888887763210 222233344455556678899
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhhcCCHHHHHHH
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD---VVAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
+++|++.-++..+.+.. |..+..+....+.-.+++.++.+...+-...--..+ ..-|-...-.+...+.++.|+.+
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999888766 888888888888889999999887765443211101 11222233344566889999999
Q ss_pred HHHH
Q 041804 235 YREM 238 (403)
Q Consensus 235 ~~~~ 238 (403)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 9753
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.35 E-value=0.051 Score=43.95 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=68.4
Q ss_pred CCcHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC----------------CHHHHH
Q 041804 174 VKDLHSYSIYMDIMCKS-----GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSE----------------GVDFAM 232 (403)
Q Consensus 174 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 232 (403)
+-|..+|...+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34777888888877653 456666677888899999999999999999886533 224477
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 041804 233 RVYREMREMGCQPSVVTCNTVIKLLCENGR 262 (403)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (403)
.++++|...|+.||..+-..++.++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 888888888888888888888888877664
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.29 E-value=0.63 Score=41.72 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=81.9
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 76 RYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
...-.++++.+.++...-.-. +. +....+.++..+.+.|..+.|+.+... | ..-.....+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-------------~-----~~rFeLAl~ 330 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD-------------P-----DHRFELALQ 330 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS--------------H-----HHHHHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC-------------h-----HHHhHHHHh
Confidence 334456666665555311100 11 344566666666777777777665221 1 223344556
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 041804 155 MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
.|+++.|.++.++.. +...|..|.......|+++-|.+.|.+... +..|+-.|...|+.+...++
T Consensus 331 lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 331 LGNLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp CT-HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred cCCHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 677777766544332 555777777777777777777776665432 34555556666777666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 235 YREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
.+.....|- ++....++.-.|+.++..+++.+-
T Consensus 396 ~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666665542 233344444556666666666543
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.58 Score=38.54 Aligned_cols=151 Identities=12% Similarity=0.008 Sum_probs=102.8
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcC
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYK 115 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 115 (403)
-.......|++.+|..+|....... +.+...--.+..+|...|+.+.|..++..+...... .......-+..+.+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 3456678899999999999998875 345567778899999999999999999988765433 2222223334444433
Q ss_pred CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHHcCCh
Q 041804 116 HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR--GVVKDLHSYSIYMDIMCKSGKP 193 (403)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 193 (403)
...+...+-.+... .+.|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.--|.-
T Consensus 218 ~~~~~~~l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 218 ATPEIQDLQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred cCCCHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 33333333233322 2447777888899999999999998877766554 344 666777788877777754
Q ss_pred hHHHH
Q 041804 194 WKAVK 198 (403)
Q Consensus 194 ~~a~~ 198 (403)
+.+..
T Consensus 289 Dp~~~ 293 (304)
T COG3118 289 DPLVL 293 (304)
T ss_pred CHHHH
Confidence 44433
No 239
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.36 Score=36.19 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
+...|...+. +.+.+..++|+.-|..+.+.|.. ...............|+...|...|.++-... ..|-..
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~ 130 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIG 130 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchh
Confidence 3444544444 45667778888888888777765 33333344455566777777777777766542 222211
Q ss_pred -HHHHH--HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 144 -IYNMI--LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 144 -~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
-...| .-.+...|.+++.....+.+...+-+.....-..|.-+-.+.|++.+|...|..+...
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11111 1223456667776666666655544444445555666666777777777777766554
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.15 E-value=0.1 Score=42.29 Aligned_cols=100 Identities=13% Similarity=-0.003 Sum_probs=73.5
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSS-IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCN 106 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 106 (403)
...|+.-+.. .+.|++..|...|....+..+- .-...++-.|..++...|+++.|..+|..+.+..+. -+..+.-
T Consensus 142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3466665544 4566688888888888876410 112346667888888899999998888888876654 5567777
Q ss_pred HHHHHHhcCCHHHHHHHHhcccccc
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNV 131 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (403)
|..+..+.|+.++|...|+++.+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 8888888888899988888877764
No 241
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.12 E-value=0.74 Score=39.28 Aligned_cols=48 Identities=23% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 041804 218 VIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAV 269 (403)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (403)
.+.-+...|+...|.++-.+. + .|+...|...+.+++..++|++...+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~f 230 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKF 230 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334444445544444443322 1 24555555555555555555544443
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.13 Score=44.11 Aligned_cols=106 Identities=8% Similarity=-0.086 Sum_probs=55.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHH
Q 041804 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWF 153 (403)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (403)
.+.|.+.|++..|...|++....=. |.+.-+.++..... ..-..++..+.-+|.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~------------~~~~~~~ee~~~~~--------------~~k~~~~lNlA~c~l 268 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE------------YRRSFDEEEQKKAE--------------ALKLACHLNLAACYL 268 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh------------ccccCCHHHHHHHH--------------HHHHHHhhHHHHHHH
Confidence 4578889999999999888654211 00111111111110 112233455555556
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
+.+++..|++.-++.+..+.. |.-..---..++...|+++.|...|+.+.+.
T Consensus 269 Kl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 269 KLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 666666666655555555433 4444444455556666666666666666554
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.14 Score=41.57 Aligned_cols=98 Identities=10% Similarity=-0.029 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
.|+.-+. +.+.|++..|...|....+..+. .+..+-.|..++...|++++|..+|..+.+..+ ..+.-...+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P----~s~KApdal 218 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP----KSPKAPDAL 218 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC----CCCCChHHH
Confidence 4666655 44566688888888888887765 666777888888888888888888877776542 112223556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
.-|..+..+.|+.++|..+|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777777788888888888887765
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.03 E-value=0.4 Score=35.35 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=69.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
...++..+.+.+.......+++.+...+ ..+...++.++..|++.+ ..+.+..+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN--K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c---cccCCHHHHHHHHHH
Confidence 3456666666777777778777777665 256667777777777653 3333444432 1 122334445666666
Q ss_pred cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 114 YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM-SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
.+-++++..++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666666666655432 22233333333 5566666655541 14445655555544
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.02 E-value=0.22 Score=35.34 Aligned_cols=93 Identities=13% Similarity=-0.022 Sum_probs=64.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcc--hHHHHHHHHHH
Q 041804 75 KRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK--TKIYNMILRGW 152 (403)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 152 (403)
-+.+..|+.+.|++.|.+....-+.....||.-.+++.-.|+.++|+.-+++..+-. +.... ...|---...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----CccchHHHHHHHHHHHHH
Confidence 456677888888888888888777788888888888888888888888777766542 21111 11233333456
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 041804 153 FKMSWWGKCREFWEEMDKRG 172 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~ 172 (403)
...|+-+.|..=|+...+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 66777788877777766655
No 246
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.01 E-value=0.72 Score=42.23 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=115.1
Q ss_pred HHHHHHHHHccCChh--HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--cHHHH-----
Q 041804 34 YNSVIDILGKFFEFD--LSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--DEVSY----- 104 (403)
Q Consensus 34 ~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~----- 104 (403)
++..=.+|.+.++.. +.+.-++++.+++ ..|+... +...++-.|++.+|-++|.+ .|.. -.+.|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-e~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~enRAlEmyTDlRM 673 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRG-ETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHENRALEMYTDLRM 673 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCchHHH---HHHHHHhhhhHHHHHHHHHH---cCchhhHHHHHHHHHH
Confidence 344445666555543 4444566777777 4466542 34445556666666666643 2222 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHH------HHHhCCCCC---
Q 041804 105 CNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE------EMDKRGVVK--- 175 (403)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~--- 175 (403)
.-..+-+...|..++-..+.++-..- .....+| .+....+...|+.++|..+.- -+.+.+.+.
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~W---Ar~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ 745 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADW---ARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA 745 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHH---hhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh
Confidence 12334444555555444443322110 0001122 233444555666666654321 111111111
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH-------
Q 041804 176 DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVV------- 248 (403)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 248 (403)
+..+...+...+.+...+.-|-++|..|-.. ..+++.....+++++|..+-+...+. .|++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555555666778888888877533 35677788889999998887766553 33332
Q ss_pred ----HHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 249 ----TCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 249 ----~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
-|...-++|.++|+-.+|..+++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2334456777888888888888877654
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.77 Score=43.36 Aligned_cols=182 Identities=11% Similarity=0.073 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
....-+..+.+...++-|+.+-+.-...+..-........+-+.+.|++++|...|-+... ...| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~-------~le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG-------FLEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc-------cCCh-----HHH
Confidence 3445677777788888888776443211101333344444555679999999998877665 2334 345
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCH
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGV 228 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 228 (403)
+.-|.+...+..-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 66677777788888899999999988 77788899999999999888776665443 2211 11133455556566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 229 DFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
+.|..+-..... +......++ -..+++++|.+.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 666555433322 333333333 34577888888777765
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.98 E-value=0.094 Score=42.50 Aligned_cols=104 Identities=17% Similarity=0.380 Sum_probs=67.0
Q ss_pred CCChhhHHHHHHHHhh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChh
Q 041804 209 KMDVVAYNTVIRAVGV-----SEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVI 283 (403)
Q Consensus 209 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 283 (403)
.-|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. ..|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 3455666666665543 3566777777788888888888888887777654321 12221
Q ss_pred hHHHHHHhhC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 041804 284 TYHCFFRCLE-KPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGF 329 (403)
Q Consensus 284 ~~~~l~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 329 (403)
.+..++-.|- ..+-++++++.|...|+.||..+-..|++++.+.+-
T Consensus 127 vfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1222222332 234467888888888888888888888888887765
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.89 Score=42.97 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=121.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH
Q 041804 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS 179 (403)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 179 (403)
.......-+..+.+...++-|..+.+.... +..--..........+.+.|++++|...+-+-... +.|
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~---- 400 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQHL-------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP---- 400 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh----
Confidence 334455667777788888888887654322 11112223444455667889999998887766543 222
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041804 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCE 259 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 259 (403)
..+|.-|........-..+++.+.+.|+. +...-+.|+.+|.+.++.+...++.+... .|.. ..-....+..+.+
T Consensus 401 -s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 401 -SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred -HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 23456666666777777888899988866 55566789999999999998888776554 2211 1123455666677
Q ss_pred cCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHH
Q 041804 260 NGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRM 305 (403)
Q Consensus 260 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~ 305 (403)
.+-.+.|..+-..... .......++...+++++|++.+..+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 7777777766555432 4566777888888899988877665
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.49 Score=35.54 Aligned_cols=138 Identities=6% Similarity=-0.035 Sum_probs=95.2
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-C-cH--HHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL-K-DE--VSYCN 106 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~--~~~~~ 106 (403)
...|..-+. +.+.+..++|+.-|..+...|...--....-.+.......|+...|...|+++-.... | -. ..-..
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 444544333 4577889999999999998773222222333445566788999999999999865432 2 11 11222
Q ss_pred HHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK 175 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 175 (403)
-...+...|.++......+-+... +.+.....-..|.-+-.+.|++.+|.+.|.++......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d------~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGD------GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCC------CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 233456789999888877766654 666677778888888999999999999999998754444
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=1.6 Score=40.80 Aligned_cols=116 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 041804 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLL 321 (403)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (403)
|......+.+--+..+...|+..+|.++-.+.+ .||...|-.=+.++...++-.++++-..+.. .+.-|.-++
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFV 751 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFV 751 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHH
Confidence 333344455666777788999999999888876 5788888777777766555555555554432 255688889
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041804 322 RKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDE 373 (403)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 373 (403)
.+|.+.|+.++|.+.+.+.... . -.+.+|.+.|++.+|.++--
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 9999999999999987765421 1 45678888898888876543
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.83 E-value=0.42 Score=33.97 Aligned_cols=93 Identities=9% Similarity=-0.050 Sum_probs=69.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH---HHHHhhc
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV---IRAVGVS 225 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~ 225 (403)
.-+....|+.+.|++.|.+....-++ ....||.-..++.-.|+.++|++=+++..+..-.-+...+.+. ...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34567789999999999998877655 7788999999999999999999888888776222233333322 3356677
Q ss_pred CCHHHHHHHHHHHHHcC
Q 041804 226 EGVDFAMRVYREMREMG 242 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~~ 242 (403)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887766
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=95.83 E-value=0.86 Score=40.27 Aligned_cols=118 Identities=11% Similarity=0.015 Sum_probs=73.9
Q ss_pred cHHHHHHhhhhhcccCCCcCC-HHhHHHHHHHHHc---------cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 041804 10 DWKRALEFFNWVETDCHFTHT-TDTYNSVIDILGK---------FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT 79 (403)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 79 (403)
+.+.|+.+|..........|+ ...|..+..++.. .....+|.++.++..+.+ +-|..+...+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 345677777776633334444 3344443333221 223456666666776665 4566666666666677
Q ss_pred cCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 80 AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
.++++.|..+|++....++....+|......+.-.|+.++|...+++..+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77788888888888777777666666666666667778888777777444
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.80 E-value=0.79 Score=36.99 Aligned_cols=183 Identities=8% Similarity=-0.007 Sum_probs=94.7
Q ss_pred HHHHHHHccCChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHh
Q 041804 36 SVIDILGKFFEFDLSWNLIHRMKDNPSSIP-NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCE 113 (403)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 113 (403)
.-+..-.+.|++++|.+.|+.+..+.+..| ...+.-.++-++-+.++++.|+..+++.....+. ....|..-|.+.+.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 334555677888888888888887652222 2334555666777788888888888888887776 55556666666552
Q ss_pred cC-------CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041804 114 YK-------HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186 (403)
Q Consensus 114 ~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (403)
.- +...+...+.. +..++.-|=.+.-...|......+... =...=..+.+.
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~------------------f~~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAA------------------FKELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred hccCCccccCHHHHHHHHHH------------------HHHHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11 11111111111 111111111111112222222111110 00001234456
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 187 MCKSGKPWKAVKLYKEMKKKGIKMD---VVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
|.+.|.+-.|..-++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-+-+...
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 77777777777777777766 2222 223445556666777777766665555443
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.80 E-value=0.17 Score=41.71 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE-----MGCQPSVVTCNTV 253 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 253 (403)
++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555555555555555555555542 33455555555555555555555555555443 3555555555444
Q ss_pred HHH
Q 041804 254 IKL 256 (403)
Q Consensus 254 i~~ 256 (403)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=95.80 E-value=1 Score=39.81 Aligned_cols=162 Identities=7% Similarity=0.027 Sum_probs=94.4
Q ss_pred HhH--HHHHHHHHcc-----CChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHh
Q 041804 32 DTY--NSVIDILGKF-----FEFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVT---------AHLVNEAMGTFNKLD 94 (403)
Q Consensus 32 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 94 (403)
..| ...+.+.... ...+.|..+|.+........|+ ...|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554442 2456788888888833223354 3344444433332 234556777777788
Q ss_pred hcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041804 95 EFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV 174 (403)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (403)
+.+..|+.+...+..+..-.++.+.|..+|++.... .|....+|........-.|+.++|.+.+++..+.++.
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH-------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 887778888888887777777788888888777652 2444455555555556677788888887776655322
Q ss_pred Cc-HHHHHHHHHHHHHcCChhHHHHHHH
Q 041804 175 KD-LHSYSIYMDIMCKSGKPWKAVKLYK 201 (403)
Q Consensus 175 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 201 (403)
-- .......+..|+.. ..+.|+++|-
T Consensus 405 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 405 RRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred hhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 11 11222223344433 3555555553
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.42 Score=39.95 Aligned_cols=153 Identities=8% Similarity=-0.084 Sum_probs=88.0
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHH--HH--HHHHHHHhcCCh
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT--FR--IMFKRYVTAHLV 83 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~ 83 (403)
+|++.+|-..++.+. ...|.|..++...=.++.-.|+.......++++...- .|+... |. ...-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL--~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLL--DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHH--HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccc
Confidence 455666666666666 3345566666666667777777777777777666541 133322 22 122233456777
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHH
Q 041804 84 NEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCRE 163 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 163 (403)
++|++.-++..+.+..|..+...+...+--.+++.++.+...+-.....- +...-...|-...-.+...+.++.|++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---SWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---hhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 77777777777766667777777777777777777777765554332210 111112224444455566677777777
Q ss_pred HHHH
Q 041804 164 FWEE 167 (403)
Q Consensus 164 ~~~~ 167 (403)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 7754
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.58 E-value=0.049 Score=30.62 Aligned_cols=36 Identities=6% Similarity=0.066 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHH
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYS 181 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (403)
+..+...|...|++++|.++|++..+..+. |...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 445555555555555555555555555443 444333
No 259
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.50 E-value=1.6 Score=38.34 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhchhcC-CCCChhhHHHHHHhh--CCHHHHHHHHHHHHHcCCCCchhhH-HHHHHH
Q 041804 248 VTCNTVIKLLCENGRVREAYAVLAEMPKKG-CVPDVITYHCFFRCL--EKPREILGLFDRMIESGIRPKMDTY-VMLLRK 323 (403)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~ 323 (403)
.+|...+..-.+..-++.|..+|-++.+.+ +.++...+++++..+ ++..-|..+|+.=...- ||...| .-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKF--PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhC--CCchHHHHHHHHH
Confidence 445666666667777888888888888777 667788888888766 44556677776544432 333332 344555
Q ss_pred HHhcCCcchHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 324 FGRWGFLRPVFVVWKKMEELGCSPD--EFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
+...++-..|..+|+..... +..+ ...|..+|+.-..-|+...|..+-++|..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66778888888888855432 1122 45777788777777877776666666654
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.46 E-value=0.6 Score=35.97 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=71.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--cHHHHH-
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN--HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--DEVSYC- 105 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~- 105 (403)
...+..+...|.+.|+.+.|.+.|.++.+.. ..+. ...+-.+++...-.+++..+.....+....... |...-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3468899999999999999999999998864 2233 346778889999999999999988887654332 222211
Q ss_pred -HHH--HHHHhcCCHHHHHHHHhcccccc
Q 041804 106 -NLV--DALCEYKHVIEAQELCFGENKNV 131 (403)
Q Consensus 106 -~l~--~~~~~~~~~~~a~~~~~~~~~~~ 131 (403)
... -.+...+++..|-+.|-......
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 111 12335789999999887776543
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.31 E-value=0.44 Score=40.31 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=118.9
Q ss_pred ccccHHHHHHhhhhhcccCCCc-CCHHhHHHHHHHHHccCChhHHHHHHH----HhhhCCCCCCCHHHHHHHHHHHHhcC
Q 041804 7 YANDWKRALEFFNWVETDCHFT-HTTDTYNSVIDILGKFFEFDLSWNLIH----RMKDNPSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (403)
++++.++|+..+.....+.... .-..+|..+..+.++.|.+++++..-- ...+.....---.+|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677776665554311111 123467777778888888877665322 11111100011235666666666666
Q ss_pred ChHHHHHHHHHHhhcCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcC
Q 041804 82 LVNEAMGTFNKLDEFGLKD-----EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMS 156 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (403)
++.+++.+-..-......+ -....++..++...+.++++++.|+....-....+ .......++-.|-..|....
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~-D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND-DAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-CceeeeehhhhHHHHHHHHH
Confidence 7777776666554433221 23444566666667777777777665543210000 11223445677777777777
Q ss_pred ChhHHHHHHHHHHh----CCCCCcHHH-H-----HHHHHHHHHcCChhHHHHHHHHHHH----cCCCCC-hhhHHHHHHH
Q 041804 157 WWGKCREFWEEMDK----RGVVKDLHS-Y-----SIYMDIMCKSGKPWKAVKLYKEMKK----KGIKMD-VVAYNTVIRA 221 (403)
Q Consensus 157 ~~~~a~~~~~~~~~----~~~~~~~~~-~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~ 221 (403)
|+++|.-+..+..+ .++. |... | ..|.-++-..|...+|.+.-++..+ .|-.+. ......+...
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77777655544322 2222 2211 1 2233345556666666665555432 232221 1233345556
Q ss_pred HhhcCCHHHHHHHHHHHH
Q 041804 222 VGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~ 239 (403)
|...|+.+.|+.-|+...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 666777777666665543
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.26 E-value=0.72 Score=32.92 Aligned_cols=59 Identities=25% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 183 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
.+..+..+|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3334444444444444444443321 3333344444444444444444444444444443
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.18 E-value=0.88 Score=33.49 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHH
Q 041804 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILR 150 (403)
Q Consensus 71 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (403)
..++..+...+........++.+...+..++..++.++..|++.+ ..+....+..- .+......+++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~------------~~~yd~~~~~~ 77 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNK------------SNHYDIEKVGK 77 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhc------------cccCCHHHHHH
Confidence 345666666677777777777777766457777777777777653 23333333310 11111233555
Q ss_pred HHHhcCChhHHHHHHHHH
Q 041804 151 GWFKMSWWGKCREFWEEM 168 (403)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~ 168 (403)
.|.+.+-++++.-++.++
T Consensus 78 ~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 78 LCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHcCcHHHHHHHHHhh
Confidence 555555555555555554
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.17 E-value=0.37 Score=39.76 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 041804 315 DTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA-----KGLSAKPREELG 389 (403)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 389 (403)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677777778888888888888887764 45777888888888888888888888877665 377766655444
Q ss_pred HH
Q 041804 390 TK 391 (403)
Q Consensus 390 ~~ 391 (403)
..
T Consensus 233 y~ 234 (280)
T COG3629 233 YE 234 (280)
T ss_pred HH
Confidence 43
No 265
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.90 E-value=2.5 Score=37.24 Aligned_cols=44 Identities=7% Similarity=0.148 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCC----CCChhhHHHHHHHHh
Q 041804 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGI----KMDVVAYNTVIRAVG 223 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~ 223 (403)
=++.+.++...|.+.++..+++++...=+ ..+..+|+.++-.++
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 34556677778888888777777665422 356667776555553
No 266
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.86 E-value=0.036 Score=29.05 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=20.3
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041804 90 FNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQ 121 (403)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (403)
|++.++..|.+..+|..+..++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555556666777777777667666664
No 267
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=1.7 Score=34.88 Aligned_cols=194 Identities=12% Similarity=0.014 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHH
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNM 147 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (403)
..|.....+|-...++++|...+.+..+..-.+...|. .. ...+.|.-+.+++..- +.-+..|+-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-AA------KayEqaamLake~~kl--------sEvvdl~eK 96 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-AA------KAYEQAAMLAKELSKL--------SEVVDLYEK 96 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-HH------HHHHHHHHHHHHHHHh--------HHHHHHHHH
Confidence 35666677788888888888877776642211222221 11 2233333333333321 222334666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---C--CCCChhhHHHHHHHH
Q 041804 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK---G--IKMDVVAYNTVIRAV 222 (403)
Q Consensus 148 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ll~~~ 222 (403)
....|..+|..+.|-..+++.-+. ..+-++++|+++|.+...- + ...-...+..+-+.+
T Consensus 97 As~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 667788888887777776665431 2344566666666664432 1 011112344445566
Q ss_pred hhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHhchh---cCCCCChhhHHHHHHhh
Q 041804 223 GVSEGVDFAMRVYREMREM----GCQPSV-VTCNTVIKLLCENGRVREAYAVLAEMPK---KGCVPDVITYHCFFRCL 292 (403)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~ 292 (403)
.+...+++|-..+.+-... .-.++. ..|-..|-.|....++..|..+++.-.. ..-.-+..+...++.+|
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 6777777766555433211 111222 3355566667777899999999988432 22223566677777777
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.78 E-value=1.2 Score=33.16 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=22.3
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHhhc
Q 041804 43 KFFEFDLSWNLIHRMKDNPSSIPNHATFRI-MFKRYVTAHLVNEAMGTFNKLDEF 96 (403)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 96 (403)
+.++.+++..++..+.-.. |....... -...+...|++.+|+++|+.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455555555555554432 32222111 122334455555555555554443
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.70 E-value=2.8 Score=39.24 Aligned_cols=180 Identities=13% Similarity=0.018 Sum_probs=90.1
Q ss_pred hhHHHHHHHHhhhCCCCCCCHHHHHHHHH----H-HHhcCChHHHHHHHHHHhh-------cCCCcHHHHHHHHHHHHhc
Q 041804 47 FDLSWNLIHRMKDNPSSIPNHATFRIMFK----R-YVTAHLVNEAMGTFNKLDE-------FGLKDEVSYCNLVDALCEY 114 (403)
Q Consensus 47 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~ 114 (403)
...|.++++.....+ +......+.. + +....+.+.|+.+|....+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcC
Confidence 467888888888876 2222222222 2 4456788999999988866 22 444555666666653
Q ss_pred C-----CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 115 K-----HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK-MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 115 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
. +.+.|..++.+.... + .|+....-..+..... ..+...|.++|......|.. +..-+..++....
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~------g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G 373 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL------G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELG 373 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc------C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhC
Confidence 2 455566666655543 1 2222222111111111 23456677777776666544 2222222221111
Q ss_pred --HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 189 --KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 189 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
...+...|..++.+.-+.| .|...--...+..+.. ++++.+...+..+.+.|
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2235566666666666665 2222222222233333 55555555555555443
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.58 E-value=1.9 Score=34.53 Aligned_cols=224 Identities=14% Similarity=0.030 Sum_probs=154.2
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041804 44 FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDE--FGLKDEVSYCNLVDALCEYKHVIEAQ 121 (403)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (403)
.+....+...+...............+......+...+.+..+...+..... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 5667777777777776541111356777788888888888888888888776 33347777777777888888888888
Q ss_pred HHHhcccccccccccccCcchHHHHHHHH-HHHhcCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHcCChhHHHH
Q 041804 122 ELCFGENKNVGFSGLVEMNKTKIYNMILR-GWFKMSWWGKCREFWEEMDKRGV--VKDLHSYSIYMDIMCKSGKPWKAVK 198 (403)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 198 (403)
..+....... ..+......... .+...|+++.+...+.+...... ......+......+...++.+.+..
T Consensus 116 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 116 ELLEKALALD-------PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred HHHHHHHcCC-------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 8887776531 111222333333 78888999999999988865332 1234445555555777889999999
Q ss_pred HHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 199 LYKEMKKKGIKM-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 199 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
.+....... .. ....+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 189 LLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998888763 33 3567777888888888899999999888876322 2344444444444677788998888887765
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.56 E-value=2 Score=34.73 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 319 MLLRKFGRWGFLRPVFVVWKKMEELGCSPDE---FAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.+.+.|.+.|.+-.|..-+++|.+. .+-+. ..+-.+..+|...|..++|.+.-+-+..+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 4567789999999999999999886 33333 34556678999999999998876666553
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.42 E-value=0.12 Score=27.40 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 351 AYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 351 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
+|..|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999988553
No 273
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.29 E-value=3.8 Score=36.65 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=68.5
Q ss_pred HHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041804 13 RALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNK 92 (403)
Q Consensus 13 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 92 (403)
....+|+... ..++.|+..|...+..+-+.+.+.+...+|..|....+..|+...+.+. .-|..+.+++.|..+|.+
T Consensus 89 rIv~lyr~at--~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRAT--NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHH
Confidence 3455666665 3466799999999999999999999999999999976444444443222 233444559999999999
Q ss_pred HhhcCCCcHHHHHHHHHH
Q 041804 93 LDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~ 110 (403)
-....+.++..|....+.
T Consensus 166 gLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HhhcCCCChHHHHHHHHH
Confidence 999888777766554443
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.27 E-value=1.8 Score=32.79 Aligned_cols=136 Identities=12% Similarity=0.094 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhC-CHHHHHHHHHHHHHcCC
Q 041804 232 MRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLE-KPREILGLFDRMIESGI 310 (403)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~ 310 (403)
.++++.+.+.+++|+...+..++..+.+.|++..... +...++-+|.......+-.++ ....+.++--+|...-
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh-
Confidence 4556667778889999999999999999988655444 445566677766666555543 3334444444444320
Q ss_pred CCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 311 RPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 311 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
...+..++..+...|++-+|..+.+...... .+ ....++++..+.++...-..+++-...++
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1145667788889999999999987754322 22 23456788888888877666776666643
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.23 E-value=1.8 Score=33.32 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC---C----HHH
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV--VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP---S----VVT 249 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~----~~~ 249 (403)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+-.+++...-.+++..+...+.++...--.+ + ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4455555666666666666666665554322222 234445555555566666555555544321111 1 112
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 250 CNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
|..+ .+...+++..|-..|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2334678888887777654
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.19 E-value=3 Score=35.22 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH--cC----ChhHHHHHHHHHHHcC---CCCChhhHHHHHHHHhhcCC-
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK--SG----KPWKAVKLYKEMKKKG---IKMDVVAYNTVIRAVGVSEG- 227 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~- 227 (403)
+++...+++.|.+.|+.-+..+|.+..-.... .. ....+..+|+.|++.- ..++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34445667777777777666666553333322 12 2346777777777762 13344555555433 2333
Q ss_pred ---HHHHHHHHHHHHHcCCCC
Q 041804 228 ---VDFAMRVYREMREMGCQP 245 (403)
Q Consensus 228 ---~~~a~~~~~~~~~~~~~~ 245 (403)
.+.++.+|+.+.+.|...
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 234555555665555443
No 277
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.88 E-value=2.6 Score=33.22 Aligned_cols=187 Identities=12% Similarity=-0.011 Sum_probs=106.5
Q ss_pred HHHccCChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH
Q 041804 40 ILGKFFEFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI 118 (403)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (403)
.|-..|-..-|.-=|.+..... |+ +.+||.+.-.+...|+++.|.+.|+...+.++....+...-.-++.-.|++.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 3444565566666666655533 44 5678888888889999999999999999988874444444443444567887
Q ss_pred HHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCcHHHHHHHHHHHHHcCChhHHH
Q 041804 119 EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW-EEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAV 197 (403)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 197 (403)
-|.+-+...-+.. ...|-...|--+.. ..-++.+|..-+ ++.... |..-|..-|-.|.- |++. ..
T Consensus 151 LAq~d~~~fYQ~D-----~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e 216 (297)
T COG4785 151 LAQDDLLAFYQDD-----PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EE 216 (297)
T ss_pred hhHHHHHHHHhcC-----CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HH
Confidence 7777666555432 22332222222221 233455665433 333332 43344433332221 2211 11
Q ss_pred HHHHHHHHcCC------CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 041804 198 KLYKEMKKKGI------KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 198 ~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (403)
.+++++....- ..=..||--+.+.+...|+.++|..+|+-....++
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22333322210 11246788888999999999999999998877643
No 278
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.62 E-value=2.1 Score=31.33 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=25.2
Q ss_pred cccHHHHHHhhhhhcccCCCcC-CHHhHHHHHHHHHccCChhHHHHHHHHhhhCC
Q 041804 8 ANDWKRALEFFNWVETDCHFTH-TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP 61 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 61 (403)
.|++++|++.|+.+..+....+ ...+--.++.+|.+.+++++|...+++..+..
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4455555555555543322222 22334444555555555555555555555543
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.56 E-value=3.2 Score=33.25 Aligned_cols=221 Identities=13% Similarity=-0.001 Sum_probs=138.5
Q ss_pred cCChHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC
Q 041804 80 AHLVNEAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW 157 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (403)
.+....+...+......... ....+......+...+....+...+....... ........+......+...++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELE-----LLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-----hccchHHHHHHHHHHHHHHhh
Confidence 45566666666666655544 35667777777777888887777776655310 224555666777777777788
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHH-HHHHcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHHhhcCCHHHHHHH
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMD-IMCKSGKPWKAVKLYKEMKKKGI--KMDVVAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
+..+.+.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 111 YEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 888888888887765443 222233333 67788888888888888755321 11233344444446677888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCC----hhhHHHHHHhhCCHHHHHHHHHHHHHc
Q 041804 235 YREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPD----VITYHCFFRCLEKPREILGLFDRMIES 308 (403)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~a~~~~~~~~~~ 308 (403)
+....+.........+..+...+...++++.+...+...... .|+ ...........+...++...+......
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888877532213566777777788888888888888877764 232 111222222334567777777776654
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.55 E-value=0.2 Score=26.60 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKL 93 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~ 93 (403)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 281
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.45 E-value=0.0041 Score=46.20 Aligned_cols=84 Identities=8% Similarity=-0.002 Sum_probs=43.8
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH 116 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (403)
++..+.+.+.++....+++.+...+ ...+....+.++..|++.+..++..++++.... .-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc------cCHHHHHHHHHhcch
Confidence 4555555666666666666666544 234456666666666666665666655541111 222344444555555
Q ss_pred HHHHHHHHhcc
Q 041804 117 VIEAQELCFGE 127 (403)
Q Consensus 117 ~~~a~~~~~~~ 127 (403)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555544443
No 282
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=7.4 Score=36.74 Aligned_cols=286 Identities=12% Similarity=0.095 Sum_probs=141.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC---HHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 72 IMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH---VIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 72 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
.+++-+...+.+..|+++-..+...-.....+|.....-+.+..+ .+.+.++-+++.. . .-....|..+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-------~-~~~~iSy~~i 513 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-------K-LTPGISYAAI 513 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-------c-CCCceeHHHH
Confidence 456677778888888888777654322245666666666665532 2222222222222 1 1334567888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC----CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-----------CCCChh
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVV----KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG-----------IKMDVV 213 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~ 213 (403)
.+....+|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+...- .+....
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 88888889999888877643222211 122244555666677777777777666655431 111111
Q ss_pred hHHHHHH---------HHhhcCCHHHHHHH-HHHHHHc-CCCCCHHHHHHHHHHHHhcCcHHH----------HHHHHHh
Q 041804 214 AYNTVIR---------AVGVSEGVDFAMRV-YREMREM-GCQPSVVTCNTVIKLLCENGRVRE----------AYAVLAE 272 (403)
Q Consensus 214 ~~~~ll~---------~~~~~~~~~~a~~~-~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~----------a~~~~~~ 272 (403)
.|.-+++ .|-...+...+-.+ ++..... -+.+-..........+.+...... -+.+.+.
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2221111 01111111111111 1110000 011111122223333433332111 1122222
Q ss_pred chh-cCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC
Q 041804 273 MPK-KGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPD 348 (403)
Q Consensus 273 ~~~-~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 348 (403)
+.. .|..-...+.+--+..+ |+..+|.++-.+. --||-..|..-+.+++..+++++-+++-+..+ .
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskk------s 743 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------S 743 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------C
Confidence 221 12111222222222211 4455555554443 23677788888888888888877666544332 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041804 349 EFAYNALVDALIDKGMLDMARKYDEEM 375 (403)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~a~~~~~~m 375 (403)
+.-|..++.+|.+.|+.++|.+++-+.
T Consensus 744 PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 744 PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 456777888899999999988887654
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.27 E-value=2.6 Score=37.64 Aligned_cols=59 Identities=20% Similarity=0.080 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 71 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
..+..++-+.|+.++|++.|++|.+..+. ...+...|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34666677889999999999999876554 566889999999999999999999988754
No 284
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=2.6 Score=38.48 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=102.6
Q ss_pred hcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCCh
Q 041804 79 TAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWW 158 (403)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (403)
-.|+++.|..++-.+. ....+.+...+.++|..++|+.+- ..|+. -.....+.|++
T Consensus 598 mrrd~~~a~~vLp~I~------k~~rt~va~Fle~~g~~e~AL~~s-------------~D~d~-----rFelal~lgrl 653 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP------KEIRTKVAHFLESQGMKEQALELS-------------TDPDQ-----RFELALKLGRL 653 (794)
T ss_pred hhccccccccccccCc------hhhhhhHHhHhhhccchHhhhhcC-------------CChhh-----hhhhhhhcCcH
Confidence 3456655555443222 345566777778888888887662 22221 22345567888
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 041804 159 GKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238 (403)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 238 (403)
+.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-...
T Consensus 654 ~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 654 DIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 88888766653 666899999999999999999988877654 456777778888887777776666
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 239 REMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
.+.|.. |....+|...|+++++.+++.+-
T Consensus 719 ~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 719 KKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred Hhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 666543 33345667789999998888654
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.05 E-value=1.1 Score=29.92 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 195 KAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
++.+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555555555556666666666666666555554
No 286
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.04 E-value=1.9 Score=29.20 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 195 KAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
+..+-++.+...++.|+..+..+.+++|.+.+++..|.++|+.++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455555556666666666666666666666666666665543
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.01 E-value=5.7 Score=34.63 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=52.9
Q ss_pred CchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 312 PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSP---DEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 312 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
....+|..+...+-+.|.++.|...+.++...+..+ ++...-..++.+...|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678889999999999999999999988743211 3455555677788899999999999988883
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.97 E-value=0.14 Score=26.77 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=16.5
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHcCChhHHH
Q 041804 166 EEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAV 197 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 197 (403)
++.++..+. +..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 334444444 5555666666666666665553
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=1.4 Score=36.74 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=74.2
Q ss_pred ccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChh
Q 041804 137 VEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG---VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVV 213 (403)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (403)
+.+.+..+...++..-....++++++..+-++...- ..|+.. -.+.++.+ -.-++++++.++..=+..|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 344455555666666666778888888888876542 122222 22233333 3347889999999989999999999
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 214 AYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 214 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
+++.+|..+.+.+++..|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988877755
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.37 E-value=3.6 Score=30.77 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVV-KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
+..-.+.++.+++..++..+.-..+. |...++. ...+...|++.+|..+|+++...
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhcc
Confidence 34445667778888888777654332 1222222 23456778888888888887665
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.23 E-value=8.4 Score=34.66 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIK-MDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 181 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
.-+..++-+.|+.++|.+.+++|.+.... -...+...|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445555666666666666666544211 122345556666666666666666666543
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.11 E-value=0.51 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 350 FAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
.+|..+..+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3556666666667777777766666655
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.91 E-value=4.4 Score=30.72 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555566666666666665543221 111223345555555555555555544444
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.87 E-value=2.1 Score=35.73 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc---CCCCChhhHHHHHHhh--CCHHHHHHHHHHHHHcCCCCchhh
Q 041804 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK---GCVPDVITYHCFFRCL--EKPREILGLFDRMIESGIRPKMDT 316 (403)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~ 316 (403)
|......+...++..-....+++.+...+-.++.. -..|+.. ...+++-+ -++++++.++..=+..|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 33344445555555555556666666666665532 1112211 11222222 234566666666667777788888
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 317 YVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
++.+|+.+.+.+++.+|..+...|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888877777776666543
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.60 E-value=0.64 Score=24.01 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEF 96 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 96 (403)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444445555555555555555554443
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.28 E-value=8.8 Score=32.96 Aligned_cols=230 Identities=11% Similarity=0.028 Sum_probs=136.8
Q ss_pred HccCChhHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----hhcCCC--cHHHHHHHHHHHHhc
Q 041804 42 GKFFEFDLSWNLIHRMKDNPS-SIPNHATFRIMFKRYVTAHLVNEAMGTFNKL----DEFGLK--DEVSYCNLVDALCEY 114 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~--~~~~~~~l~~~~~~~ 114 (403)
....+.++|+..+......-. ..--..++..+..+.++.|.+++++..--.- .+..-. --..|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777766665554310 1112335566677777888777665432221 111111 334667777777777
Q ss_pred CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHH
Q 041804 115 KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG-----VVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 189 (403)
-++.+++.+-..-....+... + ..-....-++..++...+.++++++.|+...+.. .......+..|.+.|.+
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~-~-~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRA-G-QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCc-c-cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 777777776544433321111 1 1112334457778888889999999998875532 22234678999999999
Q ss_pred cCChhHHHHHHHHHHHc----CCCCChh-hHH-----HHHHHHhhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHH
Q 041804 190 SGKPWKAVKLYKEMKKK----GIKMDVV-AYN-----TVIRAVGVSEGVDFAMRVYREMRE----MGCQPS-VVTCNTVI 254 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~----~~~~~~~-~~~-----~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~li 254 (403)
..|+++|.-+.....+. ++. |.. -|. .+.-++...|....|.+.-++..+ .|-.+. ......+.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999998776665432 222 221 122 233455667777777777766554 342222 23455677
Q ss_pred HHHHhcCcHHHHHHHHHhch
Q 041804 255 KLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 255 ~~~~~~g~~~~a~~~~~~~~ 274 (403)
+.|...|+.+.|+.-|+...
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 88889999999988887643
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.24 E-value=0.7 Score=23.76 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 351 AYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 351 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
.|..+...+.+.|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666777777777777776655
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.23 E-value=0.75 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 95 (403)
|..+..++...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.18 E-value=2.9 Score=32.61 Aligned_cols=72 Identities=6% Similarity=-0.006 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCChhhHHHHHHHHhhcCCHHHH
Q 041804 159 GKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK---GIKMDVVAYNTVIRAVGVSEGVDFA 231 (403)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 231 (403)
+.|.+.|-++...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+.+|+..+.+.++.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443323333333333332 34455555555444433 1234444555555555555544444
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.17 E-value=4.7 Score=29.67 Aligned_cols=49 Identities=10% Similarity=-0.208 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhccc
Q 041804 80 AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (403)
.++++++..++..|.-..|.....-..-...+...|++++|..+|+++.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 3344444444444443333322222222233334444444444444433
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.15 E-value=0.73 Score=25.10 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 349 EFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35778888889999999999999888765
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.97 E-value=8.2 Score=32.08 Aligned_cols=118 Identities=6% Similarity=0.030 Sum_probs=86.1
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHc-c-CChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGK-F-FEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 86 (403)
.-..+|+++|+....+..+-.|..+...+++.... . .....--++.+-+...-+..++..+.-.++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34567788887544222345577777777777665 2 233334445555554422467888888999999999999999
Q ss_pred HHHHHHHhhc-CCC-cHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 041804 87 MGTFNKLDEF-GLK-DEVSYCNLVDALCEYKHVIEAQELCFG 126 (403)
Q Consensus 87 ~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (403)
.++++..... ++. |...|..+++.....|+..-..++..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9999988777 444 999999999999999999998888765
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.96 E-value=2.6 Score=28.21 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIR 220 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 220 (403)
.=++.+-++.+...+..|++....+.+++|-+.+++..|.++|+-.+.. ...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3456777788888888999999999999999999999999999987754 1224445665554
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=4.3 Score=37.22 Aligned_cols=151 Identities=9% Similarity=0.014 Sum_probs=88.0
Q ss_pred HccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041804 42 GKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQ 121 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (403)
.-.|+++.|..++..+++ ...+.+...+.+.|-.++|+++- ..+..-|. ...+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~s-------~D~d~rFe----lal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALELS-------TDPDQRFE----LALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCch--------hhhhhHHhHhhhccchHhhhhcC-------CChhhhhh----hhhhcCcHHHHH
Confidence 345777777666555432 23344555566667666666542 11112222 234567777777
Q ss_pred HHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 041804 122 ELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYK 201 (403)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 201 (403)
++..+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 658 ~la~e~------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 658 DLAVEA------------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred HHHHhh------------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 765443 2334477788888888888888887776652 4456666666777665555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 041804 202 EMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238 (403)
Q Consensus 202 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 238 (403)
...+.| +.|. ..-+|...|+++++.+++..-
T Consensus 717 ~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQG-KNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 555555 2232 223455677887777776544
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.89 E-value=15 Score=34.99 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=44.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh--
Q 041804 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG-CQPSVVTCNTVIKLLCE-- 259 (403)
Q Consensus 183 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 259 (403)
....+.-.|.++.|.+.+-. ..+...+.+.+...+.-|.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 44556678999999988876 2234556777776666654433322222 2222211 11222567788888876
Q ss_pred -cCcHHHHHHHHHhchhc
Q 041804 260 -NGRVREAYAVLAEMPKK 276 (403)
Q Consensus 260 -~g~~~~a~~~~~~~~~~ 276 (403)
..+...|.++|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 45788888888877654
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.51 E-value=7.4 Score=30.79 Aligned_cols=182 Identities=11% Similarity=-0.066 Sum_probs=106.9
Q ss_pred hcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCCh
Q 041804 79 TAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWW 158 (403)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (403)
..|-..-|.-=|.......|.-+.+||-+.--+...|+++.|.+.|+...+- ...-+-...|.-+ .+.--|++
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------Dp~y~Ya~lNRgi-~~YY~gR~ 149 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGI-ALYYGGRY 149 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------CCcchHHHhccce-eeeecCch
Confidence 3444555555566666666668889999999999999999999999987764 1112222222222 23346889
Q ss_pred hHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHcCChhHHHHHHH-HHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 041804 159 GKCREFWEEMDKRGVV-KDLHSYSIYMDIMCKSGKPWKAVKLYK-EMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYR 236 (403)
Q Consensus 159 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 236 (403)
+-|.+-|.+.-..+.. |-...|.-+. -..-++.+|..-+. +... .|..-|...|-.|. .|++. ...+++
T Consensus 150 ~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~ 220 (297)
T COG4785 150 KLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLME 220 (297)
T ss_pred HhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHH
Confidence 9998877777665443 2223333332 23446666665443 3332 25445544444332 12211 111222
Q ss_pred HHHHcC------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 237 EMREMG------CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 237 ~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
.+.... .+.-..||--+.+-+...|+.++|..+|+-....
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 222111 0123568888999999999999999999987765
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.21 E-value=4.3 Score=27.58 Aligned_cols=78 Identities=4% Similarity=-0.031 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHccCC--hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 32 DTYNSVIDILGKFFE--FDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 32 ~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
..|..--..+....+ .-+..+-++.+...+ ..|++....+.+++|-+.+++..|.++|+-++..-......|..+++
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~D-lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYD-LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSS-B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccc-cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 334443344443333 335666777777766 67888888888888888888888888888877654333336665554
Q ss_pred H
Q 041804 110 A 110 (403)
Q Consensus 110 ~ 110 (403)
-
T Consensus 88 E 88 (108)
T PF02284_consen 88 E 88 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.09 E-value=14 Score=33.40 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
.|....-+++..++.+....-++.+..+|...| .+...+..++++|... ..+.-..+++++.+. .-+..+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~--------dfnDvv 133 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--------DFNDVV 133 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--------cchhHH
Confidence 455556666677777766777777777776654 3555666677777666 444555555555442 122222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCChhhHHHH
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVV-----KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-GIKMDVVAYNTV 218 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 218 (403)
...-+.-+...++.+.+..+|.++..+=++ .-...|.-+... -..+.+..+.+..+.... |...-...+.-+
T Consensus 134 ~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 134 IGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 233333333336666666666665443211 011233333321 123455555555555544 333344455555
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 219 IRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
-.-|....++++|.+++..+.+..
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhc
Confidence 666777778888888887766653
No 309
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.95 E-value=2.6 Score=33.19 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=26.7
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEF 96 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 96 (403)
.++.+.+.+++++++...+.-.+.. +.|...-..++..++-.|++++|..-++-.-..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3444445555555555544443332 223334444455555555555555444444333
No 310
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.95 E-value=10 Score=31.55 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=58.4
Q ss_pred cCChHHHHHHHHHHhhc-CC-CcHHHHHHHHHHHHh-cCC-HHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 80 AHLVNEAMGTFNKLDEF-GL-KDEVSYCNLVDALCE-YKH-VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~-~~-~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
+..+.+|+++|+..... .+ .|+.+...+++.... .+. ...--++.+-+.... +..++..+....+..+++.
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~-----~~~l~~~vi~~Il~~L~~~ 215 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTF-----SKSLTRNVIISILEILAES 215 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhcc-----ccCCChhHHHHHHHHHHhc
Confidence 33455677777643322 12 277777777776665 221 111111111111111 2344555555566666666
Q ss_pred CChhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 041804 156 SWWGKCREFWEEMDKR-GVVKDLHSYSIYMDIMCKSGKPWKAVKLYK 201 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 201 (403)
++|.+-.++++..... ++.-|...|..+|+.-...|+..-..++.+
T Consensus 216 ~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 216 RDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 6666666666555444 444455566666666666666554444443
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.70 E-value=15 Score=32.98 Aligned_cols=132 Identities=8% Similarity=-0.015 Sum_probs=84.5
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH 116 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (403)
-|.-....|++-.|-+-+.....+-...|+... .....+...|+++.+.+.+....+.-.....+...+++.....|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 344455667777665544444443223344433 334456778999999988877765444477788888999999999
Q ss_pred HHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 041804 117 VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL 177 (403)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 177 (403)
++.|...-..+... ...+..+........-..|-++++.-.|+++...+.+.+.
T Consensus 373 ~~~a~s~a~~~l~~-------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 373 WREALSTAEMMLSN-------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHHHhcc-------ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 99999887777653 2223333333334444557788888888888776554333
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.69 E-value=9.2 Score=34.16 Aligned_cols=126 Identities=10% Similarity=-0.055 Sum_probs=90.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHH
Q 041804 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWF 153 (403)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (403)
|.--...|+.-.|-+-+.......+.++.............|+++.+...+..... .......+...+++...
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~-------~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK-------IIGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh-------hhcCCchHHHHHHHhhh
Confidence 33344567777776666666665555555555555566788999999988776654 33445567788999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 041804 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207 (403)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 207 (403)
+.|+++.|...-+.|....++ +...........-..|-++++...|+++...+
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999999888777 55555555455556677888888888886653
No 313
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.42 E-value=5 Score=27.16 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=62.4
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMG 88 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 88 (403)
..+++|.-+-+|+.. .+.. ...+--.-+..+...|++++|..+.+.+. .||...|..|-. .+.|..+.+..
T Consensus 19 HcHqEA~tIAdwL~~-~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 19 HCHQEANTIADWLHL-KGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred hHHHHHHHHHHHHhc-CCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHH
Confidence 467899999999985 2111 22223334566788999999999887773 489988877654 67788888888
Q ss_pred HHHHHhhcCCCcHHHHH
Q 041804 89 TFNKLDEFGLKDEVSYC 105 (403)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ 105 (403)
.+.+|...|.+....|.
T Consensus 90 rl~rla~sg~p~lq~Fa 106 (115)
T TIGR02508 90 RLNRLAASGDPRLQTFV 106 (115)
T ss_pred HHHHHHhCCCHHHHHHH
Confidence 88888887776444443
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.12 E-value=7.4 Score=30.44 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=54.9
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----cHHHHHHHHHHHHhcCCHHHHH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK----DEVSYCNLVDALCEYKHVIEAQ 121 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 121 (403)
.-+.|...|-.+...+ ..-++. ....+..|-...+.++++.++.+..+...+ |+..+.+|+..+.+.++.+.|-
T Consensus 121 ~d~~A~~~fL~~E~~~-~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTP-ELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCC-CCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4567888888888776 223444 444444555578899999999988765432 8899999999999999998874
No 315
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.08 E-value=12 Score=31.14 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 238 (403)
+++...+.|..+|.+.+|.++-+...... +.+...+..++..+...||--.+.+.++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444556666666666666666665553 445556666666666666655555555444
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.06 E-value=11 Score=37.65 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=12.9
Q ss_pred ccccHHHHHHhhhhhcc
Q 041804 7 YANDWKRALEFFNWVET 23 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~ 23 (403)
.+.|+++=+.+++.+.+
T Consensus 863 SqkDPkEyLP~L~el~~ 879 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKK 879 (1265)
T ss_pred hccChHHHHHHHHHHhh
Confidence 35688888888888764
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.89 E-value=1.3 Score=24.09 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 95 (403)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666665543
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=23 Score=33.93 Aligned_cols=151 Identities=11% Similarity=0.029 Sum_probs=89.9
Q ss_pred ccccHHHHHHhhhhhcccCCCcC---CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 7 YANDWKRALEFFNWVETDCHFTH---TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
..+.+++|++.-+.... ..| -.......|..+.-.|++++|-...-.|.. .+...|..-...+...++.
T Consensus 368 ~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhcccccc
Confidence 34677888887766542 333 345677778888888999998888888765 4566666666666666654
Q ss_pred HHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccc----------cccccCcchHHHHHHHHHH
Q 041804 84 NEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGF----------SGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~ 152 (403)
... +.-+....+. ++..|..++-.+.. .+...-.++..+...+.-. .-.....+...-..|+..|
T Consensus 440 ~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 440 TDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred chh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 432 2223333333 67778777777766 3333333333222211100 0001112223345688899
Q ss_pred HhcCChhHHHHHHHHHH
Q 041804 153 FKMSWWGKCREFWEEMD 169 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~ 169 (403)
...+++..|.+++-...
T Consensus 516 l~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHccChHHHHHHHHhcc
Confidence 99999999988876665
No 319
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=88.62 E-value=6.1 Score=27.13 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=54.5
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMG 88 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 88 (403)
..+++|-.+.+|+.... . ....+--..+..+...|++++| +..-... ..||...|..|-. .+.|-.+++..
T Consensus 20 HcH~EA~tIa~wL~~~~-~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~---~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG-E-MEEVVALIRLSSLMNRGDYQEA--LLLPQCH---CYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp T-HHHHHHHHHHHHHTT-T-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS-----GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHhhHHHHHH--HHhcccC---CCccHHHHHHHHH--HhhccHHHHHH
Confidence 46889999999998622 1 1223333445667899999999 3222222 3588887766544 68899999999
Q ss_pred HHHHHhhcCCCcHHHH
Q 041804 89 TFNKLDEFGLKDEVSY 104 (403)
Q Consensus 89 ~~~~~~~~~~~~~~~~ 104 (403)
.+.++...|.+....|
T Consensus 91 ~l~rla~~g~~~~q~F 106 (116)
T PF09477_consen 91 RLTRLASSGSPELQAF 106 (116)
T ss_dssp HHHHHCT-SSHHHHHH
T ss_pred HHHHHHhCCCHHHHHH
Confidence 9988887776544333
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.48 E-value=13 Score=30.60 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=78.2
Q ss_pred CCcCCHHhHHHHHHHH-HccCChhHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC
Q 041804 26 HFTHTTDTYNSVIDIL-GKFFEFDLSWNLIHRMKDNPSSIP--NHATFRIMFKRYVTAHLVNEAMGTFNKLDEF---GLK 99 (403)
Q Consensus 26 ~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 99 (403)
+-.||+..-|..-..- .+..++++|+.-|+...+..+-+- ...+...++..+.+.+++++....|.++... .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3345554443332221 233456666666666665431111 1234445666666666666666666655421 111
Q ss_pred ---cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----
Q 041804 100 ---DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG---- 172 (403)
Q Consensus 100 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 172 (403)
+....+++++..+...+.+-....++.-.....-.. ....=-.+-.-|...|...+++.+..+++.++...-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 334445555544444443333332221111000000 000000112334455555666666666666654321
Q ss_pred -CC------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 173 -VV------KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 173 -~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
-. .=...|..=|..|....+-.+-..+|++...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 00 0123455555555556665555666665543
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.44 E-value=43 Score=36.75 Aligned_cols=62 Identities=15% Similarity=-0.039 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 314 MDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
..+|....+..-+.|.++.|...+-...+.+ . +..+--....+...|+...|+.++++....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567788888888999999998877777664 2 345555667788999999999999998865
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.23 E-value=1.2 Score=25.00 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 354 ALVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 354 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35788999999999999999988654
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.79 E-value=0.3 Score=36.17 Aligned_cols=84 Identities=7% Similarity=0.103 Sum_probs=36.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRV 263 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (403)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcchH
Confidence 333444444555555555555443333444445555555555444444444441 0111122334444445555
Q ss_pred HHHHHHHHhch
Q 041804 264 REAYAVLAEMP 274 (403)
Q Consensus 264 ~~a~~~~~~~~ 274 (403)
+.+.-++.++.
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 55555555443
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.75 E-value=7.6 Score=30.28 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=23.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
..++.+.+.++.|++--...++.++. ...+..--..+|.+..++++|+.=|+.+.+.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 33444444444444444444443322 1111222223444445555555555555544
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.46 E-value=22 Score=32.27 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH
Q 041804 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS 179 (403)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 179 (403)
|.....+++..+..+..+.-.+.+..++..- ..+...|-.++.+|... ..+.-..+|+++.+..+. |+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~ 134 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVI 134 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh--------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHH
Confidence 6677888888888888888888888877653 45677889999999988 678889999999998777 7766
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Q 041804 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIK-----MDVVAYNTVIRAVGVSEGVDFAMRVYREMREM-GCQPSVVTCNTV 253 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 253 (403)
-..|...|-+ ++.+.+...|......=++ .-...|.-+.... ..+.+...++...+.+. |...-...+.-+
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 6777776666 8888899999888766222 1123455554322 56778888888777654 444445666667
Q ss_pred HHHHHhcCcHHHHHHHHHhchhc
Q 041804 254 IKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
-.-|....++++|++++..+.+.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhh
Confidence 78888999999999999987764
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.19 E-value=2.4 Score=21.70 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 350 FAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
.+|..+...|...|++++|...|++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777888888888888888888765
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.19 E-value=1.6 Score=36.79 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=61.2
Q ss_pred HHHHccCChhHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 39 DILGKFFEFDLSWNLIHRMKDNPSSIP-NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
.-|.++|.+++|++.|..-.... | |.+++..-..+|.+...+..|+.=.+.....+-.-..+|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35778889999999998877754 5 7788888888888888888887766666654433445555555555566666
Q ss_pred HHHHHHHhcccc
Q 041804 118 IEAQELCFGENK 129 (403)
Q Consensus 118 ~~a~~~~~~~~~ 129 (403)
.+|.+-++....
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 666665555443
No 328
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.96 E-value=3.7 Score=34.76 Aligned_cols=93 Identities=8% Similarity=-0.094 Sum_probs=65.2
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChH
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVN 84 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (403)
+..+|++++|++.|..... -.+.|+..+..-..+|.+..++..|..=.......+ ..-..+|..-+.+-...|...
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHhhHH
Confidence 5678999999999987763 234488999999999999999988877666665532 112334555555555566777
Q ss_pred HHHHHHHHHhhcCCCcH
Q 041804 85 EAMGTFNKLDEFGLKDE 101 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~ 101 (403)
+|.+=++..++..+.+.
T Consensus 183 EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhHHHHHhhCcccH
Confidence 77777777777665533
No 329
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.67 E-value=20 Score=30.93 Aligned_cols=99 Identities=7% Similarity=0.022 Sum_probs=71.9
Q ss_pred cCCHHhHHHHHHHHHccCC------------hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 041804 28 THTTDTYNSVIDILGKFFE------------FDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 95 (403)
+.|+.+|-.++..--..-. .+.-+.++++..+.+ +.+...+...|..+.+..+.+...+.++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5578888888765443321 355677888887775 35677788889999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHh---cCCHHHHHHHHhccc
Q 041804 96 FGLKDEVSYCNLVDALCE---YKHVIEAQELCFGEN 128 (403)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 128 (403)
..+.+...|...+..... .-.++....+|.+..
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 887788888888887665 224555555554443
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.30 E-value=11 Score=29.42 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=27.4
Q ss_pred HHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 041804 36 SVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL 98 (403)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 98 (403)
.-..++.+.+.++.|+.-.....+.+ +....+...-..+|.+...++.|+.=|.++.+..+
T Consensus 139 Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 139 NRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 33344445555555555554444433 11122222223344555555555555555555444
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.04 E-value=33 Score=32.82 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=37.6
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---cC
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT---AH 81 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~ 81 (403)
+...|+++.|++++... .....+...+...+..|.-.+-.+... ..+.......|...-+..||..|.+ ..
T Consensus 268 LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 268 LLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34457778888777652 223444555544444433222211111 2222221111222456778888876 35
Q ss_pred ChHHHHHHHHHHhhcCCC
Q 041804 82 LVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~ 99 (403)
++..|.+.|--+....-+
T Consensus 342 d~~~Al~Y~~li~~~~~~ 359 (613)
T PF04097_consen 342 DPREALQYLYLICLFKDP 359 (613)
T ss_dssp -HHHHHHHHHGGGGS-SC
T ss_pred CHHHHHHHHHHHHHcCCc
Confidence 778888888777665443
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.86 E-value=1.3 Score=21.32 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 041804 353 NALVDALIDKGMLDMARKYDE 373 (403)
Q Consensus 353 ~~l~~~~~~~g~~~~a~~~~~ 373 (403)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666554
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.73 E-value=1.7 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=12.8
Q ss_pred HHHHHHhcCcHHHHHHHHHhchh
Q 041804 253 VIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 253 li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34555555555555555555554
No 334
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.70 E-value=30 Score=32.04 Aligned_cols=346 Identities=13% Similarity=0.072 Sum_probs=185.9
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHH-ccCChhHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhcCChHH
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILG-KFFEFDLSWNLIHRMKDNPSS-IPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
-|..+.+.++|+.-. .+++.+...|......+. ..|+.+...+.|++....-+. --+...|...|.--..++++..
T Consensus 92 lg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 92 LGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred hhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 356677788888777 566777777766665544 456777777788777664321 2344567777777777888888
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhc------CCHHHHHHHHhccccc--cc------------ccccccCcc--hH
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEY------KHVIEAQELCFGENKN--VG------------FSGLVEMNK--TK 143 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~--~~------------~~~~~~~~~--~~ 143 (403)
...+|+++++.....-.-|-....-+... -..+++.++-...... .. ......+.+ ..
T Consensus 170 v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~ 249 (577)
T KOG1258|consen 170 VANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTE 249 (577)
T ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhH
Confidence 88888888775443211111111111111 1222222221111100 00 000000000 00
Q ss_pred HHHHHHHH-------HHhcCChhHHHHHHHHHHhCC-------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 041804 144 IYNMILRG-------WFKMSWWGKCREFWEEMDKRG-------VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK 209 (403)
Q Consensus 144 ~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (403)
..+.+... +............|+.-.++- ..++..+|...+..-...|+++.+.-+|+...-. +.
T Consensus 250 ~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA 328 (577)
T KOG1258|consen 250 EKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CA 328 (577)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-Hh
Confidence 11111111 111111222222233322221 1235578888888889999999999998887532 11
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChh----
Q 041804 210 MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ--PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVI---- 283 (403)
Q Consensus 210 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---- 283 (403)
.=...|--.+.-....|+.+.|..++....+-..+ |....+.+.+ .-..|++..|..+++.+.+.- |+..
T Consensus 329 ~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l 404 (577)
T KOG1258|consen 329 LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVL 404 (577)
T ss_pred hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHH
Confidence 11223333344344459999999888877765443 3333344333 334789999999999988752 5432
Q ss_pred hHHHHHHhhCCHHHHH---HHHHHHHHcCCCCchhhHHHHHHH-----HHhcCCcchHHHHHHHHHhcCCCCCHHHHHHH
Q 041804 284 TYHCFFRCLEKPREIL---GLFDRMIESGIRPKMDTYVMLLRK-----FGRWGFLRPVFVVWKKMEELGCSPDEFAYNAL 355 (403)
Q Consensus 284 ~~~~l~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (403)
-+..+....++.+.+. +++........ +..+...+.-- +.-.++.+.|..++.++.+. .+++...|..+
T Consensus 405 ~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~ 481 (577)
T KOG1258|consen 405 RKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLEL 481 (577)
T ss_pred HHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHH
Confidence 2233344445555554 33333222111 22222222222 33457889999999999876 47778888888
Q ss_pred HHHHHhcC
Q 041804 356 VDALIDKG 363 (403)
Q Consensus 356 ~~~~~~~g 363 (403)
++.....+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 88766655
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.66 E-value=32 Score=32.39 Aligned_cols=185 Identities=9% Similarity=0.023 Sum_probs=112.2
Q ss_pred cHHHHHHhhhhhcccCCCcCCHHhHHHHHHH-----HHccCChhHHHHHHHHhhhC---CCCCCCHHHHHHHHHHHHhcC
Q 041804 10 DWKRALEFFNWVETDCHFTHTTDTYNSVIDI-----LGKFFEFDLSWNLIHRMKDN---PSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 81 (403)
+...|.+.++.... . -+...-..+..+ +....+++.|..+|+...+. ...+-...+..-+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~-~---g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAK-L---GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHh-h---cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 45678888887775 2 233332233222 34667999999999988761 001113335666777777643
Q ss_pred -----ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh-cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHH--
Q 041804 82 -----LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE-YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWF-- 153 (403)
Q Consensus 82 -----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 153 (403)
+.+.|+.+|...-+.|.++...+...+..... ..+...|.++|...... +..+ .+-.+..+|.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------G~~~---A~~~la~~y~~G 373 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------GHIL---AIYRLALCYELG 373 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------CChH---HHHHHHHHHHhC
Confidence 66779999999998887766555444444333 34678999999888764 3222 2222222221
Q ss_pred --hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 041804 154 --KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK 209 (403)
Q Consensus 154 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (403)
-..+...|..++.+..+.|.. ...--...+..+.. ++++.+.-.+..+...|..
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 234678888999988888732 32222233334444 7777777777777766533
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.42 E-value=1.2 Score=22.67 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=11.5
Q ss_pred HHHHHHccCChhHHHHHHHHhhh
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKD 59 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~ 59 (403)
+..++.+.|++++|.+.|+++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444445555555555555544
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.97 E-value=2 Score=21.70 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGL 98 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 98 (403)
+-.+..++.+.|++++|.+.|+++.+..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34456677777888888888888776544
No 338
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.95 E-value=32 Score=31.81 Aligned_cols=326 Identities=10% Similarity=0.064 Sum_probs=181.9
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH-ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
+...++.+|.---...+.+.+..+++.+...- |.. --|......=.+.|..+.+.++|++-...-+.....|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44556666665555556677788888888653 554 35777777777889999999999998864433777777776
Q ss_pred HHHH-hcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041804 109 DALC-EYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187 (403)
Q Consensus 109 ~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (403)
..+. ..|+.+.....|+......+ ..-.+...|...+..-...+++.....+++++++. ....|+.....|
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG----~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f 192 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVG----LDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRF 192 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcc----cchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHH
Confidence 6655 46777788888877766442 22345566888888888889999999999999875 233344333333
Q ss_pred HH---c------CChhHHHHHHHHHHHc---C-CCCChhhHHHHH------------------HH-------HhhcCCHH
Q 041804 188 CK---S------GKPWKAVKLYKEMKKK---G-IKMDVVAYNTVI------------------RA-------VGVSEGVD 229 (403)
Q Consensus 188 ~~---~------~~~~~a~~~~~~~~~~---~-~~~~~~~~~~ll------------------~~-------~~~~~~~~ 229 (403)
.+ . ...+++.++-...... + ..+.......-+ .. +-......
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEE 272 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 22 1 1233333332222210 0 000111111111 11 11111111
Q ss_pred HHHHHHHHHHHc---CCC----CCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC-C--hhhHHHHHHhhCCHHHHH
Q 041804 230 FAMRVYREMREM---GCQ----PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP-D--VITYHCFFRCLEKPREIL 299 (403)
Q Consensus 230 ~a~~~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~~~a~ 299 (403)
.....|+.-.+. .++ +...+|+..+..-...|+.+.+.-+|++..-. +.. + -.-|...+...++.+-+.
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~ 351 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLAN 351 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHH
Confidence 222222222211 111 23567888888888888888888888876531 000 1 112233344456666565
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 041804 300 GLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEF-AYNALVDALIDKGMLDMAR 369 (403)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~ 369 (403)
.++....+-..+-.+.+-..-...+-..|++..|..+++.+.+.- |+.. .-..-+....+.|..+.+.
T Consensus 352 ~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 352 NVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 555555443333222222222222345678999999999887753 4432 2223345566778887777
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.85 E-value=18 Score=28.79 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (403)
.+..++.+.+.+...+++...+.-.+..+.+...-..+++.++-.|++++|..-++-...-.. ...+....|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p----~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP----QDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc----ccchHHHHHHHHH
Confidence 445567788889999999999998888888888899999999999999999877665433211 3345566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRG 172 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~ 172 (403)
.+-.-. .++|.--...|
T Consensus 80 r~ea~R------~evfag~~~Pg 96 (273)
T COG4455 80 RCEAAR------NEVFAGGAVPG 96 (273)
T ss_pred HHHHHH------HHHhccCCCCC
Confidence 654322 34555544444
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.61 E-value=9.1 Score=27.23 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 195 KAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
+..+-+..+...++.|+..+....+++|.+.+|+..|.++|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455556666677777777777777777777777777777776643
No 341
>PRK09687 putative lyase; Provisional
Probab=84.32 E-value=24 Score=29.74 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=29.1
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV----NEAMGTFNKL 93 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~ 93 (403)
+|.......+..+...|..+ +...+..+... +|...-...+.+++..|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 45555555555665555432 33333333321 4555555555666666553 3455555444
No 342
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.23 E-value=26 Score=30.19 Aligned_cols=64 Identities=16% Similarity=0.065 Sum_probs=34.1
Q ss_pred CcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH---cCChhHHHHHHHHH
Q 041804 139 MNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK---SGKPWKAVKLYKEM 203 (403)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 203 (403)
+.+....-.++..+.+..+.+...+-|+++....+. +...|...+..... .-.++.+..+|.+.
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 345555566666666666666666666666665433 45555555554433 12344444444443
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.12 E-value=18 Score=30.14 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhccc
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (403)
+++...+.|..+|.+.+|.++-++....++-+...+..++..+...|+--.+.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445566789999999999999999999987799999999999999999777766655543
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.08 E-value=18 Score=28.18 Aligned_cols=117 Identities=12% Similarity=0.004 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhcCCCcHH-HH--HHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHH
Q 041804 85 EAMGTFNKLDEFGLKDEV-SY--CNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKC 161 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~-~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 161 (403)
+.....+++......+.+ ++ ..+...+...+++++|+..++....... .......+--.|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~----De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK----DENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch----hHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444555555554433222 22 2344556677788888777776553310 1111222333455666777888888
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 041804 162 REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207 (403)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 207 (403)
...++.....+..+ .....-.+.+...|+-++|..-|+.....+
T Consensus 146 L~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 146 LKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88877776653331 123334567778888888888888877764
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.84 E-value=23 Score=29.43 Aligned_cols=56 Identities=5% Similarity=-0.051 Sum_probs=22.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
|.+++..+++.+++...-+..+..-+....+...-|-.|.+.+.+..+.++-..-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444445555544443333322111122223333334445555554444444443
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.81 E-value=3.9 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555566666666666555544
No 347
>PRK10941 hypothetical protein; Provisional
Probab=83.40 E-value=16 Score=30.43 Aligned_cols=78 Identities=8% Similarity=-0.071 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
..+.+-.+|.+.++++.|+++.+.+....+.++.-+.--.-.|.+.|.+..|..=++...... ...|+.......
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~dp~a~~ik~q 257 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CCchhHHHHHHH
Confidence 456677788999999999999999999998899988888888999999999998877776643 344554444444
Q ss_pred HHH
Q 041804 149 LRG 151 (403)
Q Consensus 149 ~~~ 151 (403)
+..
T Consensus 258 l~~ 260 (269)
T PRK10941 258 IHS 260 (269)
T ss_pred HHH
Confidence 333
No 348
>PRK09687 putative lyase; Provisional
Probab=83.04 E-value=27 Score=29.41 Aligned_cols=217 Identities=13% Similarity=0.004 Sum_probs=137.2
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCChhhH
Q 041804 140 NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP----WKAVKLYKEMKKKGIKMDVVAY 215 (403)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 215 (403)
++..+....+..+...|.. .+...+..+... +|...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4555666666777766653 333444444433 4666667777788888764 4677777776444 4566666
Q ss_pred HHHHHHHhhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH
Q 041804 216 NTVIRAVGVSEGV-----DFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR 290 (403)
Q Consensus 216 ~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 290 (403)
...+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6777777665421 223333333333 3466666777888888887 4666776666653 45555555666
Q ss_pred hhCC----HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041804 291 CLEK----PREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLD 366 (403)
Q Consensus 291 ~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (403)
++|+ ..++...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 6664 3356665555553 45777788888999999884 5666655555543 2 245678899999985
Q ss_pred HHHHHHHHHHHcC
Q 041804 367 MARKYDEEMFAKG 379 (403)
Q Consensus 367 ~a~~~~~~m~~~~ 379 (403)
+|...+..+.+..
T Consensus 252 ~a~p~L~~l~~~~ 264 (280)
T PRK09687 252 TLLPVLDTLLYKF 264 (280)
T ss_pred hHHHHHHHHHhhC
Confidence 7899999888744
No 349
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.92 E-value=45 Score=31.91 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-cCCC---cHHHHHHHHHHHH-hcCCHHHHHHHHhcccccccccccccC
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDE-FGLK---DEVSYCNLVDALC-EYKHVIEAQELCFGENKNVGFSGLVEM 139 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~---~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (403)
.+...|..||. .|+++++.+.+ ..++ ...++..+...+. ...+++.|+..+.+........+ -..
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~-~~d 97 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR-LTD 97 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hHH
Confidence 34445555554 45555555552 2222 3444555555555 45667777776665433210000 000
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcHHHHHHH-HHHHHHcCChhHHHHHHHHHHHcC---CCCC
Q 041804 140 NKTKIYNMILRGWFKMSWWGKCREFWEEMDKR----GVVKDLHSYSIY-MDIMCKSGKPWKAVKLYKEMKKKG---IKMD 211 (403)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 211 (403)
..-..-..++..+.+.+... |.+.+++..+. +..+-...+..+ +..+...+++..|.+.++.+...- ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 01122234455555555544 66666654432 112222333333 222223367777777776665442 2233
Q ss_pred hhhHHHHHHHHh--hcCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHH--hcCcHHHHHHHHHhc
Q 041804 212 VVAYNTVIRAVG--VSEGVDFAMRVYREMREMGC---------QPSVVTCNTVIKLLC--ENGRVREAYAVLAEM 273 (403)
Q Consensus 212 ~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~ 273 (403)
..++..++.+.. +.+..+++.+.++.+..... .|-..+|..+++.++ ..|+++.+...++++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444333 33445555555555532211 123445555554433 456655555554443
No 350
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.79 E-value=31 Score=29.99 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 248 VTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
.+|..+...+.+.|.++.|...+..+..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 3444555555555555555555555544
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.73 E-value=46 Score=31.86 Aligned_cols=200 Identities=7% Similarity=-0.006 Sum_probs=117.4
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCC----c
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH--ATFRIMFKRYV-TAHLVNEAMGTFNKLDEFGLK----D 100 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~----~ 100 (403)
+.+...|..||.. |++.++.+.+....+|.. .++-.+...+. ...+++.|+..+++....... +
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3456677777765 566666666543344433 34555666665 678899999999876443322 2
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CC
Q 041804 101 E--VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI-LRGWFKMSWWGKCREFWEEMDKRG---VV 174 (403)
Q Consensus 101 ~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~ 174 (403)
. ..-..+++.+.+.+... |...+++....... .+..+-...|..+ +..+...+++..|.+.++.+.... ..
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~--~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET--YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 1 22334566666666655 88888876654211 0222333344444 333334479999999998876543 33
Q ss_pred CcHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCC---------CCChhhHHHHHHHHh--hcCCHHHHHHHHHHHH
Q 041804 175 KDLHSYSIYMDIMC--KSGKPWKAVKLYKEMKKKGI---------KMDVVAYNTVIRAVG--VSEGVDFAMRVYREMR 239 (403)
Q Consensus 175 ~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 239 (403)
|-...+-.++.+.. +.+.++++.+.++.+..... .|-..+|..++..++ ..|+++.+...++.+.
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555544 45667778888777744321 334556777766554 5667666666655554
No 352
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.18 E-value=18 Score=26.73 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=68.4
Q ss_pred CCCcCCHH--hHHHHHHHHHccCChhHHHHHHHHhhhCCC----CCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhcC
Q 041804 25 CHFTHTTD--TYNSVIDILGKFFEFDLSWNLIHRMKDNPS----SIPNHATFRIMFKRYVTAHL-VNEAMGTFNKLDEFG 97 (403)
Q Consensus 25 ~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 97 (403)
.+..++.. ..+.++.-....+++.-.+.+++.+..... ...+...|+.++.+.++... --.+..+|+.+++.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 34555543 467888888888999999998888854320 02344578999999977766 456788899999877
Q ss_pred CC-cHHHHHHHHHHHHhcCC
Q 041804 98 LK-DEVSYCNLVDALCEYKH 116 (403)
Q Consensus 98 ~~-~~~~~~~l~~~~~~~~~ 116 (403)
.+ ++.-|..++.++.+...
T Consensus 111 ~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 77 99999999999887533
No 353
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=81.89 E-value=22 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=14.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 182 IYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
++|-.|-+.-++.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666554
No 354
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.66 E-value=40 Score=30.47 Aligned_cols=131 Identities=12% Similarity=-0.048 Sum_probs=75.2
Q ss_pred HHccCChhHHHHHHHHhhhCCCCCCCHH-------HHHHHHH-HHHhcCChHHHHHHHHHHhhcCCC-cHHHH--HHHHH
Q 041804 41 LGKFFEFDLSWNLIHRMKDNPSSIPNHA-------TFRIMFK-RYVTAHLVNEAMGTFNKLDEFGLK-DEVSY--CNLVD 109 (403)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~--~~l~~ 109 (403)
-.-.|++.+|++-...|.+--...|... ....++. .+...|.++.|+.-|....+.--. |...+ ..+.-
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 3457999999998888876432234421 1222333 344678999999988877664433 44444 34566
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
.|.+.++.+.-.++++.+-........+......++..-.-.....+++.+|...+.+-.+.
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 78888888887777766543210000011111111222222234668888888888776654
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.65 E-value=19 Score=26.67 Aligned_cols=68 Identities=7% Similarity=-0.030 Sum_probs=45.9
Q ss_pred HhHHHHHHH---HHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcH
Q 041804 32 DTYNSVIDI---LGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE 101 (403)
Q Consensus 32 ~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 101 (403)
.+.+.||.. -...++++++..+++.|.-..+..|...++. ...+...|++.+|+++|+.+.+.+...+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 344444443 3458899999999999887542223333443 3446789999999999999988664433
No 356
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=81.61 E-value=2 Score=30.83 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=23.0
Q ss_pred HHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 041804 289 FRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKF 324 (403)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (403)
++++|...+|..+|++|++.|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4556666777777777777777766 566666543
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.10 E-value=30 Score=28.76 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=64.8
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHh--
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCE-- 113 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~-- 113 (403)
=|++++..+++.+++.+.-+--+.. -+--......-|-.|++.+.+..+.++-.......-. +...|..+...|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~p-EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVP-EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3788999999999988766555432 1223445666777899999999999998887776544 55568877776654
Q ss_pred ---cCCHHHHHHHH
Q 041804 114 ---YKHVIEAQELC 124 (403)
Q Consensus 114 ---~~~~~~a~~~~ 124 (403)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 89999999886
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.31 E-value=4.3 Score=24.82 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=23.6
Q ss_pred chHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 331 RPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
+...++++.++.. +-|-.-.-.+|.+|...|++++|.++++++.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444332 23333444556677777777777777666654
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.93 E-value=19 Score=27.73 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC----C-------HHHHHHHHhcccccccccccccCcchHHHHHHHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK----H-------VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (403)
+++|+.-|++.....|....++..+..++...+ + +++|...|++... ..|+..+|+.-+..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--------~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--------EDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--------cCCCcHHHHHHHHH
Confidence 345666666777777777777777777776533 2 3444444544443 36888888888777
Q ss_pred HHhcCChhHHHHHHHHHHhCCC
Q 041804 152 WFKMSWWGKCREFWEEMDKRGV 173 (403)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~ 173 (403)
.. +|-++..++.+.+.
T Consensus 123 ~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 123 AA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HH------THHHHHHHHHHSSS
T ss_pred HH------hhHHHHHHHHHHHh
Confidence 63 46666666666543
No 360
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.76 E-value=43 Score=29.54 Aligned_cols=63 Identities=6% Similarity=0.019 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
..+.-+...|...|+++.|++.|.+....-.. ....|..+|..-.-.|+|........+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35677888899999999999999986654332 5566777888888888888777776665543
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.23 E-value=12 Score=29.39 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 345 CSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
..|++.+|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468888888888888888888888888887766
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.47 E-value=75 Score=31.62 Aligned_cols=118 Identities=8% Similarity=-0.024 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCcHHHH
Q 041804 103 SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWW--GKCREFWEEMDKRGVVKDLHSY 180 (403)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~ 180 (403)
-|..|+..|...|+.++|++++.+....... ...--...+...+....+.+.. +-..++-+...+....-....+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~---~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD---TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc---cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 3788889999999999999999887764210 0000111122234444444433 3333333333332211111111
Q ss_pred HH------------HHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 041804 181 SI------------YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVG 223 (403)
Q Consensus 181 ~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 223 (403)
.. -+-.|.....++-+..+++.+....-.++..-.+.++..|+
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11 12234455566666666666666554555555566665554
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.33 E-value=7.7 Score=24.95 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=34.1
Q ss_pred hcCCcchHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 041804 326 RWGFLRPVFVVWKKMEELGCSPD--EFAYNALVDALIDKGMLDMARKYDE 373 (403)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 373 (403)
...+.++|+..|+...+.-..|. -.++..++.+|+..|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888876532222 2356677888899999888877643
No 364
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.49 E-value=15 Score=24.64 Aligned_cols=56 Identities=7% Similarity=-0.011 Sum_probs=31.0
Q ss_pred HHccCChhHHHHHHHHhh----hCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 041804 41 LGKFFEFDLSWNLIHRMK----DNPSSIP----NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG 97 (403)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~----~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 97 (403)
..+.|++..|.+.+.+.. ..+ ..+ -..+.-.+...+...|++++|...+++..+.-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~-~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSN-NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346677777755444433 322 111 01223334556667788888888888776543
No 365
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.47 E-value=71 Score=30.87 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=70.8
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
++-+.+.+.+++|++..+..........-...+...+..+.-.|++++|-...-.|.. .+..-|..-+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhcccccc
Confidence 4566778899999998887766431111345677888899999999999888877775 3566677777777777666
Q ss_pred HHHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 118 IEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
.....+ +... ....+..+|..++..+..
T Consensus 440 ~~Ia~~---lPt~------~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPY---LPTG------PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhcc---CCCC------CcccCchHHHHHHHHHHH
Confidence 544332 1111 223456778888888776
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.35 E-value=23 Score=31.81 Aligned_cols=206 Identities=11% Similarity=0.036 Sum_probs=103.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHhhc
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHS--YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVV--AYNTVIRAVGVS 225 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~ 225 (403)
...+..|+.+- ++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..
T Consensus 7 ~~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 33445566544 455556677665532 233445556677765 445555666655432 122344555678
Q ss_pred CCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCCh---hhHHHHHHhh--CCHH
Q 041804 226 EGVDFAMRVYREMREMGCQPS----VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV---ITYHCFFRCL--EKPR 296 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~--~~~~ 296 (403)
|+.+.+..+++ .|...+ ....+ .+...+..|+.+-+..+ .+.|..|+. .-.+.+..+. ++.
T Consensus 79 g~~~~v~~Ll~----~~~~~~~~~~~~g~t-pL~~A~~~~~~~iv~~L----l~~gad~~~~~~~g~tpLh~A~~~~~~- 148 (413)
T PHA02875 79 GDVKAVEELLD----LGKFADDVFYKDGMT-PLHLATILKKLDIMKLL----IARGADPDIPNTDKFSPLHLAVMMGDI- 148 (413)
T ss_pred CCHHHHHHHHH----cCCcccccccCCCCC-HHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHcCCH-
Confidence 88877655554 332211 11122 33344566776544444 444555432 2223333333 333
Q ss_pred HHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHH
Q 041804 297 EILGLFDRMIESGIRPKMD---TYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAY---NALVDALIDKGMLDMARK 370 (403)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~ 370 (403)
++.+.+.+.|..++.. -.+. +...+..|+.+ +.+.+.+.|..++...- .+++...+..|+. +
T Consensus 149 ---~~v~~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~ 216 (413)
T PHA02875 149 ---KGIELLIDHKACLDIEDCCGCTP-LIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----D 216 (413)
T ss_pred ---HHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----H
Confidence 3445556666554432 2223 33344556644 45556667766654321 2344444566665 4
Q ss_pred HHHHHHHcCCCCChh
Q 041804 371 YDEEMFAKGLSAKPR 385 (403)
Q Consensus 371 ~~~~m~~~~~~p~~~ 385 (403)
+.+-+.+.|..|+..
T Consensus 217 iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHHCCcCcchH
Confidence 566667788887754
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.97 E-value=25 Score=25.32 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 041804 85 EAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFG 126 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (403)
.+..+|..|...++. -+..|..-...+...|++.+|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 888888888887765 777788888888888888888888764
No 368
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.84 E-value=13 Score=26.46 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 298 ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
..+-+..+....+.|++.....-+++|-+.+|+..|..+|+-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444445555667777777777777777777777777777766543
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.57 E-value=20 Score=33.16 Aligned_cols=104 Identities=11% Similarity=-0.006 Sum_probs=65.0
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
+..|+...|...+....... ...+....-.|...+.+.|-...|-.++.+..... ...+.++-.+.+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~~~-p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLA-PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhccC-hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHH
Confidence 34567777777666554311 11122334556666677777777777776665543 2344566677777777778888
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
|++.|++..+..+.+...-+.|...-|
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 888888777777666666666655544
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.36 E-value=7 Score=18.77 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLD 94 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~ 94 (403)
|..+...+...++++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444455555554444443
No 371
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.07 E-value=3.9 Score=29.37 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=25.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041804 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187 (403)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (403)
+.|.-.+|..+|..|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34667889999999999998888 577777643
No 372
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.25 E-value=28 Score=25.06 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCcchHHHHHH
Q 041804 297 EILGLFDRMIESGIRPK-MDTYVMLLRKFGRWGFLRPVFVVWK 338 (403)
Q Consensus 297 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 338 (403)
++.++|..|...|+-.. ...|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445555544433222 2334444444444555555555444
No 373
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.01 E-value=13 Score=21.22 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=19.1
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041804 325 GRWGFLRPVFVVWKKMEELGCSPDEFAYNALVD 357 (403)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (403)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666666666665555543
No 374
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.01 E-value=36 Score=26.23 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 041804 194 WKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222 (403)
Q Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 222 (403)
++|...|+..... .|+..+|..-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3444444444443 56666666555554
No 375
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.75 E-value=53 Score=28.04 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhchh----cCCCCChhhHHHHHHhh-CC---HHHHHHHHHHHHHcCCCCchh----hH
Q 041804 250 CNTVIKLLCENGRVREAYAVLAEMPK----KGCVPDVITYHCFFRCL-EK---PREILGLFDRMIESGIRPKMD----TY 317 (403)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~l~~~~-~~---~~~a~~~~~~~~~~~~~~~~~----~~ 317 (403)
+-....-|++.|+.+.|.+.+.+..+ .|.+.|...+..=+.-+ .+ ..+.++..+.+.+.|-..+.. +|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 33444556666666666655554332 24444444443333222 22 233344444455555444332 22
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHH
Q 041804 318 VMLLRKFGRWGFLRPVFVVWKKME 341 (403)
Q Consensus 318 ~~li~~~~~~g~~~~a~~~~~~~~ 341 (403)
..+- |....++.+|-.+|-+..
T Consensus 187 ~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 187 QGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHH--HHHHHhHHHHHHHHHHHc
Confidence 2211 223345556655555444
No 376
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.46 E-value=97 Score=30.90 Aligned_cols=116 Identities=8% Similarity=0.005 Sum_probs=71.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCC-CCC-CHHHHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCC-cHHHHHH-
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPS-SIP-NHATFRIMFKRYVTAHLV--NEAMGTFNKLDEFGLK-DEVSYCN- 106 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~-~~~~~~~- 106 (403)
-|..|+..|...|..++|+++|.+...... ..+ -...+..++..+.+.+.. +-+++.-.+.....+. ....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 478889999999999999999998877331 001 112334466666666655 6666666666665543 2222222
Q ss_pred -----------HHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 107 -----------LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 107 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
.+-.|......+-+...++.+... ...++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~------~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD------NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh------ccccchHHHHHHHHHHHH
Confidence 233345556666677777776664 445566667777777764
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.22 E-value=32 Score=31.94 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=68.1
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 041804 140 NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVI 219 (403)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 219 (403)
|--.+.|...-.+...|+...|.+.+.......+.-.-.....|.....+.|-..+|..++.+..... ....-++-.+-
T Consensus 605 p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g 683 (886)
T KOG4507|consen 605 PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLG 683 (886)
T ss_pred CeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcc
Confidence 33333333333344467777777777666554333233445556666666777777777777766553 33445666677
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041804 220 RAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKL 256 (403)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (403)
+++....+++.|++.|++..+.... +...-+.|...
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 7777778888888888877765322 44444544433
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.14 E-value=4.8 Score=25.87 Aligned_cols=47 Identities=4% Similarity=-0.031 Sum_probs=25.6
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 041804 43 KFFEFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVTAHLVNEAMGT 89 (403)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 89 (403)
..++.++|+..|....+.....|+ ..++..++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666554322222 12455566666666666665554
No 379
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.44 E-value=53 Score=27.46 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=81.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH-------HHHHHHHHHHHcCChhHHHHHHHHHHH----cCCCCChhhH
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKDLH-------SYSIYMDIMCKSGKPWKAVKLYKEMKK----KGIKMDVVAY 215 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 215 (403)
.+.+-..+.+++++|+..+.++...|+..|.. +...+...|...|++..--+......+ -.-+-.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 34566678899999999999999998776654 455677888888988766555544322 2212233456
Q ss_pred HHHHHHHhh-cCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 216 NTVIRAVGV-SEGVDFAMRVYREMREMGCQPS-----VVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 216 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
.+++..+.. ...++.-..+.....+....-. ...-.-++..+.+.|.+.+|+.+...+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 666766643 3446666666665554422211 122244778889999999998876543
No 380
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.60 E-value=1e+02 Score=30.40 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=121.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHH-------HHHHHHH-HHHHcCChhHHHHHHHHHHHc----CCCCChhhHHHHHH
Q 041804 153 FKMSWWGKCREFWEEMDKRGVVKDLH-------SYSIYMD-IMCKSGKPWKAVKLYKEMKKK----GIKMDVVAYNTVIR 220 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~ 220 (403)
....++++|..++.++...-..|+.. .++.+-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678899998888876543333221 2333322 234578899999988887665 12334556677777
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHH--HHHHhcCcHH--HHHHHHHhchhc--CCCC----ChhhHHH
Q 041804 221 AVGVSEGVDFAMRVYREMREMGCQPSVVTC---NTVI--KLLCENGRVR--EAYAVLAEMPKK--GCVP----DVITYHC 287 (403)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li--~~~~~~g~~~--~a~~~~~~~~~~--~~~p----~~~~~~~ 287 (403)
+..-.|++++|..+.....+..-.-+...+ ..+. ..+...|+.. .....|...... +-+| -..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999998887765323333333 2222 2344566332 222333332211 0111 2234444
Q ss_pred HHHhhCCHHHHHHHHHHHH----HcCCCCchhh--HHHHHHHHHhcCCcchHHHHHHHHHhcCCC----CCHHHHHHHHH
Q 041804 288 FFRCLEKPREILGLFDRMI----ESGIRPKMDT--YVMLLRKFGRWGFLRPVFVVWKKMEELGCS----PDEFAYNALVD 357 (403)
Q Consensus 288 l~~~~~~~~~a~~~~~~~~----~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 357 (403)
++.++.+.+.+..-...-. .....|-..- +..|+......|++++|...+.++...... ++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 5555544443332222222 2222222222 236778888999999999999988654222 22222223333
Q ss_pred --HHHhcCCHHHHHHHHHH
Q 041804 358 --ALIDKGMLDMARKYDEE 374 (403)
Q Consensus 358 --~~~~~g~~~~a~~~~~~ 374 (403)
.....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 33457888887776665
No 381
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.25 E-value=51 Score=26.73 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=7.2
Q ss_pred ccHHHHHHhhhhh
Q 041804 9 NDWKRALEFFNWV 21 (403)
Q Consensus 9 ~~~~~A~~~~~~~ 21 (403)
+++++|.++|...
T Consensus 28 ~k~eeAadl~~~A 40 (288)
T KOG1586|consen 28 NKYEEAAELYERA 40 (288)
T ss_pred cchHHHHHHHHHH
Confidence 4556666655544
No 382
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.15 E-value=52 Score=26.77 Aligned_cols=102 Identities=10% Similarity=0.018 Sum_probs=53.2
Q ss_pred HhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC
Q 041804 78 VTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW 157 (403)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (403)
.....++.|+..|.+.....+....-|..-+-++.+..+++.+..=..+..+ -.+..+.....+-.+......
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq-------l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-------LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-------cChHHHHHHHHHHHHHHhhcc
Confidence 3345566666666666666655555566666666666666655544443333 112222333444455555666
Q ss_pred hhHHHHHHHHHHh----CCCCCcHHHHHHHHHH
Q 041804 158 WGKCREFWEEMDK----RGVVKDLHSYSIYMDI 186 (403)
Q Consensus 158 ~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~ 186 (403)
++.|+..+.+..+ ..+.|-...+..|..+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 6777666666532 2233333444555443
No 383
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.90 E-value=75 Score=28.53 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=93.6
Q ss_pred HhcCCHHHHHHHHhcccccccccccccCcchHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH--HHHHHHHHH
Q 041804 112 CEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI--YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLH--SYSIYMDIM 187 (403)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 187 (403)
+..|+.+-+..+++.- ..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ....-+...
T Consensus 10 ~~~g~~~iv~~Ll~~g----------~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A 75 (413)
T PHA02875 10 ILFGELDIARRLLDIG----------INPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDA 75 (413)
T ss_pred HHhCCHHHHHHHHHCC----------CCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHH
Confidence 4567777666665432 1111111 123344455666654 444445555544422 112334555
Q ss_pred HHcCChhHHHHHHHHHHHcCCCC----ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcC
Q 041804 188 CKSGKPWKAVKLYKEMKKKGIKM----DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVT--CNTVIKLLCENG 261 (403)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g 261 (403)
+..|+.+.+..+++ .|... +..-.+ .+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|
T Consensus 76 ~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 76 VEEGDVKAVEELLD----LGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHCCCHHHHHHHHH----cCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 67787776555443 33211 111122 233344566654 4444556666554321 112334445677
Q ss_pred cHHHHHHHHHhchhcCCCC---ChhhHHHHHHhh--CCHHHHHHHHHHHHHcCCCCchhhH---HHHHHHHHhcCCcchH
Q 041804 262 RVREAYAVLAEMPKKGCVP---DVITYHCFFRCL--EKPREILGLFDRMIESGIRPKMDTY---VMLLRKFGRWGFLRPV 333 (403)
Q Consensus 262 ~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a 333 (403)
+.+-+..+++. |..+ |..-.+.+..+. ++ .++.+.+.+.|..|+...- .+++...+..|+.+
T Consensus 147 ~~~~v~~Ll~~----g~~~~~~d~~g~TpL~~A~~~g~----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~-- 216 (413)
T PHA02875 147 DIKGIELLIDH----KACLDIEDCCGCTPLIIAMAKGD----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID-- 216 (413)
T ss_pred CHHHHHHHHhc----CCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH--
Confidence 77655555443 3222 222223333332 22 3455566677776654321 23444444556543
Q ss_pred HHHHHHHHhcCCCCCH
Q 041804 334 FVVWKKMEELGCSPDE 349 (403)
Q Consensus 334 ~~~~~~~~~~~~~~~~ 349 (403)
+.+.+.+.|..++.
T Consensus 217 --iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 --IVRLFIKRGADCNI 230 (413)
T ss_pred --HHHHHHHCCcCcch
Confidence 44445556655553
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.84 E-value=22 Score=27.85 Aligned_cols=53 Identities=8% Similarity=-0.072 Sum_probs=37.3
Q ss_pred ccCChhHHH---HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 041804 43 KFFEFDLSW---NLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL 98 (403)
Q Consensus 43 ~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 98 (403)
...+.+... +..++... ..|+...|..++.++...|+.++|.++..++...-+
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~---~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLR---RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444333 34444444 458888888889999999999999888888877665
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.56 E-value=27 Score=23.46 Aligned_cols=54 Identities=17% Similarity=0.044 Sum_probs=28.2
Q ss_pred HhcCCcchHHHHHHHHHh----cCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 325 GRWGFLRPVFVVWKKMEE----LGCSPD----EFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~----~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.+.|++..|.+.+.+..+ .+..+. ....-.+.......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456677666555554432 221110 112222344556677777777777776654
No 386
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.70 E-value=1.3e+02 Score=30.85 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC--CHHHHHHHHhccc
Q 041804 85 EAMGTFNKLDEFGLKDEVSYCNLVDALCEYK--HVIEAQELCFGEN 128 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 128 (403)
...+..+.......++ .-...++.+|.+.+ .++.++....+..
T Consensus 775 ~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 775 SVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3334444444444444 44456677777766 6666666655554
No 387
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.58 E-value=15 Score=21.55 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=10.0
Q ss_pred HHHhcCCcchHHHHHHHHHh
Q 041804 323 KFGRWGFLRPVFVVWKKMEE 342 (403)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~ 342 (403)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44555555555555555554
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.20 E-value=18 Score=22.13 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 228 VDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
++...++++.+... ..|-.-.-.+|.+|.+.|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444432 22333444567777777777777777766653
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.58 E-value=57 Score=30.91 Aligned_cols=77 Identities=5% Similarity=-0.060 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 197 VKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
...++.+..+-.-.+.....-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+.-+.++|+...+..+.+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444442233445566677777777777777777776654422 223455555666667776666655555543
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.51 E-value=1.2e+02 Score=29.95 Aligned_cols=197 Identities=13% Similarity=-0.002 Sum_probs=108.7
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChh-------hHHHHHH-HHhhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 041804 186 IMCKSGKPWKAVKLYKEMKKKGIKMDVV-------AYNTVIR-AVGVSEGVDFAMRVYREMREM----GCQPSVVTCNTV 253 (403)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 253 (403)
......++++|..++.++...-..|+.. .++.+-. .....|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445788999999999887763233222 2222221 123468889999888877654 233456677778
Q ss_pred HHHHHhcCcHHHHHHHHHhchhcCCCCChhhHH---HHHH-----hhCC--HHHHHHHHHHHHHc-----CC-CCchhhH
Q 041804 254 IKLLCENGRVREAYAVLAEMPKKGCVPDVITYH---CFFR-----CLEK--PREILGLFDRMIES-----GI-RPKMDTY 317 (403)
Q Consensus 254 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~---~l~~-----~~~~--~~~a~~~~~~~~~~-----~~-~~~~~~~ 317 (403)
..+..-.|++++|..+..+..+..-.-+...+. .+.. +-|. ..+....+...... .. .+-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999999888765432223433333 2222 1232 22222233333221 10 1223455
Q ss_pred HHHHHHHHhc-CCcchHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 041804 318 VMLLRKFGRW-GFLRPVFVVWKKMEELGCSPDEFAY--NALVDALIDKGMLDMARKYDEEMFAKGLSA 382 (403)
Q Consensus 318 ~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 382 (403)
..++.++.+. +...++..-++--......|-...+ ..|+......|+.++|...++++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 5666666552 1222222222222222212222222 266788888999999999999988764444
No 391
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.37 E-value=43 Score=25.88 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCCc--hhhHH-----HHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041804 296 REILGLFDRMIESGIRPK--MDTYV-----MLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~--~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
+.|+.+|+.+.+....|. ..... ..+-.|.+.|.+++|.+++++... .|+......-+...++..+
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 456666666665433321 11111 334578999999999999999886 3444444554555555443
No 392
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.30 E-value=86 Score=27.78 Aligned_cols=175 Identities=9% Similarity=0.035 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---------CCCC
Q 041804 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKRG--VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK---------GIKM 210 (403)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 210 (403)
...+.-+...|..+|+++.|.+.+.+....- .+..+..|..+|..-...|+|..+..+..+.... .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3457888899999999999999999865432 1123445666677777788888888777776654 1333
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCcHHHHHHH-----HHhchhcCCC
Q 041804 211 DVVAYNTVIRAVGVSEGVDFAMRVYREMREMG------CQPSVVTCNTVIKLLCENGRVREAYAV-----LAEMPKKGCV 279 (403)
Q Consensus 211 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~-----~~~~~~~~~~ 279 (403)
....+..+...+. +++..|.+.|-...... +.|...+....+.+.+.-++-+--..+ |+.+.+.
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 3444444444433 35555555543332111 223333333344444444433322222 2222221
Q ss_pred CChhhHHHHHHhh-CCHHHHHHHHHHHHHc-----CCCCchhhHHHHHH
Q 041804 280 PDVITYHCFFRCL-EKPREILGLFDRMIES-----GIRPKMDTYVMLLR 322 (403)
Q Consensus 280 p~~~~~~~l~~~~-~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~ 322 (403)
++..+..+...| +++..++++++++... -+.|.+.+.-.+|+
T Consensus 305 -~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 -EPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -ChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 233333333333 4566666666666532 23445555444443
No 393
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.49 E-value=48 Score=24.19 Aligned_cols=72 Identities=4% Similarity=-0.061 Sum_probs=40.8
Q ss_pred cCCHHhHHHHHHHHHccC---ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 041804 28 THTTDTYNSVIDILGKFF---EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 99 (403)
.++..+--.+..++.+.. +.++-+.+++.+.+..+.........-|.-++.+.++++++++..+.+.+..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 344445445555666554 345556677776653312222334445556677777777777777777665544
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.34 E-value=36 Score=22.71 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCC
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKH 116 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 116 (403)
|....-.+...+...|+++.|++.+-.+.+.+.. +...-..++..+.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3444444555555555555555555555544433 34444444444444443
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.32 E-value=40 Score=23.49 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 396
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.23 E-value=47 Score=25.70 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHhcCCCCC--HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 041804 330 LRPVFVVWKKMEELGCSPD--EF-----AYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELGTK 391 (403)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~--~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 391 (403)
++.|+-+|+.+.+.--.|. .. .-...+-.|.+.|.+++|.+++++.....-.+.++..+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~I 153 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 3556777776655421220 11 12344567999999999999999999865555554444433
No 397
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.80 E-value=53 Score=24.39 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=17.9
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 041804 166 EEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 207 (403)
+.+.+.|.+++. --..++..+...++.-.|.++++.+.+.+
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 334444444222 23334444444444455555555555443
No 398
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.78 E-value=36 Score=22.51 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041804 298 ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMAR 369 (403)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 369 (403)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| | ..|..++.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 45566666666653 33333333333345678888888888777 43 3 36777788887777765543
No 399
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.40 E-value=15 Score=30.75 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=33.1
Q ss_pred CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHHHHH
Q 041804 64 IPNHA-TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVSYCN 106 (403)
Q Consensus 64 ~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 106 (403)
.|+.. -|+..|....+.||+++|++++++.++.|.. -..+|..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 35554 4678899999999999999999999998887 4444443
No 400
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.91 E-value=24 Score=20.16 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=12.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 041804 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTV 218 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 218 (403)
.|-.+++...++.|.+.|+..+...+..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 33444444444444444444444444433
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.70 E-value=17 Score=17.90 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCN 106 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~ 106 (403)
.+.|..+|+++....+.+...|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444444444433334444433
No 402
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.53 E-value=22 Score=29.83 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 041804 352 YNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELG 389 (403)
Q Consensus 352 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 389 (403)
|+..|+...+.|+.++|++++++..+.|+.--..+++.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 45666666777777777777777777666544444443
No 403
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.24 E-value=76 Score=26.93 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 232 MRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
.++++.+.+.++.|.-.++..+.-.+.+.=.+...+.+++.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35566666666666666666666666666666677777766654
No 404
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=59.99 E-value=1.5e+02 Score=27.81 Aligned_cols=135 Identities=10% Similarity=-0.029 Sum_probs=77.1
Q ss_pred CChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 041804 45 FEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH--LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQE 122 (403)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (403)
|++++|+...+.....+ +.+..+.......-..+ ....-..+|+++.+.+|.-.....-++..+.. ...+.+
T Consensus 323 ~~l~eal~~~e~~c~~~---~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~ 396 (547)
T PF14929_consen 323 GRLKEALNELEKFCISS---TCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQ 396 (547)
T ss_pred ccHHHHHHHHHHhccCC---CccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHH
Confidence 78889988888876654 44433333333333333 67788889999998887755555555554443 445555
Q ss_pred HHhcccccccccccccCcchHHHHHHHHHHHh-cCCh-------hHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHc
Q 041804 123 LCFGENKNVGFSGLVEMNKTKIYNMILRGWFK-MSWW-------GKCREFWEEMDKR-GVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 190 (403)
+++.+..+. ...|+..+|--+...+.+ .+++ ..+.+++=.+... +..-+..+|..+-...-+.
T Consensus 397 Lle~i~~~l-----~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 397 LLEMIALHL-----DLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred HHHHHHHHh-----hcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Confidence 655443332 334777788888887777 2333 3333333333332 2334555666665544433
No 405
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.99 E-value=69 Score=23.76 Aligned_cols=48 Identities=6% Similarity=0.133 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHhhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041804 212 VVAYNTVIRAVGVSEG-VDFAMRVYREMREMGCQPSVVTCNTVIKLLCE 259 (403)
Q Consensus 212 ~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 259 (403)
...|..++.+.++..- --.+..+|..+.+.+.++++.-|..++.++.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3344444444433333 22334444444444444455555555544433
No 406
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=58.16 E-value=98 Score=24.97 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=66.2
Q ss_pred CcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHhhcCCC-cHHH
Q 041804 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFR--IMFKRYVTAHLVNEAMGTFNKLDEFGLK-DEVS 103 (403)
Q Consensus 27 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 103 (403)
+.+...-+|.|+--|.-...+.+|-+.|..-.......++..+++ .-|......|+.+.|++..+.+...-+. |...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 556666778888777777777777777765444321123444443 4567779999999999999887654444 4434
Q ss_pred HHHHHHH----HHhcCCHHHHHHHHhccc
Q 041804 104 YCNLVDA----LCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 104 ~~~l~~~----~~~~~~~~~a~~~~~~~~ 128 (403)
+..|... ..+.|..++|++..+.-.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 4433322 357888889888876543
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.90 E-value=1.4e+02 Score=26.62 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=41.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHH--cCChhHHHHHHHHHHHc
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLH--SYSIYMDIMCK--SGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 206 (403)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456889999999999999987 554444 45555555553 56788999999887765
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.02 E-value=56 Score=21.81 Aligned_cols=58 Identities=7% Similarity=0.057 Sum_probs=40.1
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
+.|...-..+...+...|++++|++.+-.+.+.....-+...-..|+..+...|.-+-
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 4567788888999999999999999998888876333455666777777776666443
No 409
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.89 E-value=1.2e+02 Score=26.18 Aligned_cols=57 Identities=5% Similarity=-0.047 Sum_probs=26.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041804 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKD-LHSYSIYMDIMCKSGKPWKAVKLYKEMK 204 (403)
Q Consensus 148 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (403)
|.-+..+.|+..+|.+.|+.+.+.-.-.+ ......++.++....-+.++..++.+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344455666666666655544311101 1123345555555555555555444443
No 410
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.87 E-value=1.4e+02 Score=26.37 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041804 176 DLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204 (403)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (403)
+...-..++..|...|-.+.|.+.|..+.
T Consensus 216 n~~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 216 NYQLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 33344444445555555555555554443
No 411
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=56.62 E-value=44 Score=20.44 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=8.2
Q ss_pred HcCChhHHHHHHHHHHH
Q 041804 189 KSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~ 205 (403)
..|++=+|.++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 44555555555555443
No 412
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.37 E-value=97 Score=25.52 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc----C-CCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKK----G-IKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 238 (403)
....|...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3345666777777888888777776432 1 3345556666777777777777766654443
No 413
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=56.36 E-value=44 Score=20.42 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=32.9
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 041804 323 KFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL-----IDKGMLDMARKYD 372 (403)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~ 372 (403)
.+...|++-+|-++++.+-...-.+....+..+|... .+.|+...|.+++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3456889999999999886433234566677776644 3578887777654
No 414
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.34 E-value=1.1e+02 Score=25.02 Aligned_cols=84 Identities=10% Similarity=-0.148 Sum_probs=55.9
Q ss_pred HHccCChhHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHH
Q 041804 41 LGKFFEFDLSWNLIHRMKDNPSSIPNH-ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIE 119 (403)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (403)
|.....++.|+.-|.+..... |+. .-|..-+-++.+..+++.+..--.+.++..+........+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 344456777777666666643 555 4456667777778888877777766666665555566666667777777777
Q ss_pred HHHHHhcc
Q 041804 120 AQELCFGE 127 (403)
Q Consensus 120 a~~~~~~~ 127 (403)
|...+.+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 77777665
No 415
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.94 E-value=1.2e+02 Score=25.48 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=54.3
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHH----ccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILG----KFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT--- 79 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 79 (403)
..+++..|.+.+..... .+ +......+...|. ...+..+|.++|....+.+ .......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~-~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 53 YPPDYAKALKSYEKAAE-LG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG----LAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccHHHHHHHHHHhhh-cC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCC
Confidence 45667777777776653 11 1233333444443 3345777888888666654 33333345555544
Q ss_pred -cCChHHHHHHHHHHhhcCCCcH-HHHHHHHHHHH
Q 041804 80 -AHLVNEAMGTFNKLDEFGLKDE-VSYCNLVDALC 112 (403)
Q Consensus 80 -~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~ 112 (403)
..+..+|..+|++..+.|..+. .+...+...|.
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~ 159 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL 159 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 3477788888888877766542 33344444433
No 416
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.82 E-value=1.1e+02 Score=24.66 Aligned_cols=93 Identities=6% Similarity=-0.073 Sum_probs=0.0
Q ss_pred ccccccHHHHHHhhhhhcc---cCCCcCC--HHhHHHHHHHHHccCC-------hhHHHHHHHHhhhCCCCCCC----HH
Q 041804 5 SCYANDWKRALEFFNWVET---DCHFTHT--TDTYNSVIDILGKFFE-------FDLSWNLIHRMKDNPSSIPN----HA 68 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~---~~~~~~~--~~~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~----~~ 68 (403)
+.....+++|++.|..+.- ..+.+++ ...+-.+...|-..|+ +..|.+.|.+..+....+.. ..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFG 97 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 97 (403)
..-.+....-+.|+.++|.+.|.++...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
No 417
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.69 E-value=58 Score=21.59 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=7.1
Q ss_pred cCChhHHHHHHHHHH
Q 041804 190 SGKPWKAVKLYKEMK 204 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~ 204 (403)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444554444444
No 418
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.62 E-value=41 Score=19.79 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=10.3
Q ss_pred HHHHHccCChhHHHHHHHHhhh
Q 041804 38 IDILGKFFEFDLSWNLIHRMKD 59 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~ 59 (403)
.-++.+.|++++|.+..+.+.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344455555555555555544
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.61 E-value=1e+02 Score=29.43 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChh------HHHHHHHHHHhCCCCCcHHH
Q 041804 106 NLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWG------KCREFWEEMDKRGVVKDLHS 179 (403)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~ 179 (403)
+|+.+|...|++..+.++++....... +...-...+|..++...+.|.++ .|.+.+++.. +.-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~----~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK----GDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc----CCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchH
Confidence 566667777777777666666554321 22333445666677777766543 2333333332 3335556
Q ss_pred HHHHHHHH
Q 041804 180 YSIYMDIM 187 (403)
Q Consensus 180 ~~~l~~~~ 187 (403)
|..|+.+-
T Consensus 106 ~all~~~s 113 (1117)
T COG5108 106 YALLCQAS 113 (1117)
T ss_pred HHHHHHhh
Confidence 65555443
No 420
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=55.07 E-value=2e+02 Score=29.96 Aligned_cols=132 Identities=11% Similarity=-0.100 Sum_probs=79.3
Q ss_pred HHHHHccCChhHHHH------HHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-------hhcCCC-cHHH
Q 041804 38 IDILGKFFEFDLSWN------LIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKL-------DEFGLK-DEVS 103 (403)
Q Consensus 38 i~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~-~~~~ 103 (403)
.......|.+.++.+ ++.+.-..- .++....|..+...+-+.++.++|+..-.+. ...+.+ +...
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~-h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVL-HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhc-chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 344555666666666 665333221 1344567888888899999999988865543 333333 5666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccccccccccc-cCcchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLV-EMNKTKIYNMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
|..+...+...+....|...+.+......+.... .||.+.+++.+-..+...++++.|.++++....
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7777666666667777777666555443332222 344444445544445555777778777777654
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.88 E-value=89 Score=25.73 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhc----CCC--cHHHHHHHHHHHHhcCCHHHHHHHHhcc
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEF----GLK--DEVSYCNLVDALCEYKHVIEAQELCFGE 127 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (403)
--.+..-|.+.|++++|.++|+.+... |-. ...+...+..++...|+.+....+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667778888888888888877432 212 5566667777777888887776654443
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.71 E-value=1.3e+02 Score=25.33 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHH----HHcCCCCChhhHHHHH-HHHhhcCCHHHHHHHHHH
Q 041804 181 SIYMDIMCKSGKPWKAVKLYKEM----KKKGIKMDVVAYNTVI-RAVGVSEGVDFAMRVYRE 237 (403)
Q Consensus 181 ~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~ 237 (403)
.-++..+.+.|.+.+|+.+...+ .+.+-+|+..+...+= .+|-...++.++..-+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHH
Confidence 35677888999999998776554 4445556554433221 244444444444444433
No 423
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=54.13 E-value=2.3e+02 Score=28.06 Aligned_cols=95 Identities=5% Similarity=-0.005 Sum_probs=51.8
Q ss_pred HHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCC------------CCCHHHHHHHHHHHH
Q 041804 11 WKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSS------------IPNHATFRIMFKRYV 78 (403)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~ 78 (403)
.++..+.++.+....++..+......+++. ..|+...|+.++++....+.. ..+...+..++.. .
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~a-L 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDA-L 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHH-H
Confidence 445555565554445565566555544433 367888888887765433211 1222233334443 3
Q ss_pred hcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 79 TAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
..+++..++.+++++...|..-...+..|+
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 347788888888888777765333333333
No 424
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.12 E-value=31 Score=21.38 Aligned_cols=50 Identities=8% Similarity=0.067 Sum_probs=29.8
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT 79 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 79 (403)
.|....++.++..+++-.-+++++..+.+....| ..+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g--~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG--SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 3455566677777777777777777777777666 2455555555555444
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.90 E-value=1.6e+02 Score=26.20 Aligned_cols=56 Identities=7% Similarity=0.052 Sum_probs=38.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHhh--cCCHHHHHHHHHHHHHc
Q 041804 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVV--AYNTVIRAVGV--SEGVDFAMRVYREMREM 241 (403)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 241 (403)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788899999999998887 555554 44455555543 45677888888877664
No 426
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.61 E-value=69 Score=21.83 Aligned_cols=54 Identities=13% Similarity=-0.139 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 041804 334 FVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREELG 389 (403)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 389 (403)
.+.+++....+....+.....|.-.|++.|+.+.|.+-|+.-.. +-|.+.+++-
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmD 110 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMD 110 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHH
Confidence 34455554444333344445555667777777777776665433 5565555543
No 427
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.79 E-value=93 Score=23.09 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=29.9
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041804 303 DRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363 (403)
Q Consensus 303 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (403)
..+.+.|.+++.. -..++..+...++.-.|.++++++.+.+...+..|--.-++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455554332 23445555555555666666666666544444444333344554444
No 428
>PRK10941 hypothetical protein; Provisional
Probab=52.67 E-value=1.4e+02 Score=25.06 Aligned_cols=75 Identities=8% Similarity=-0.082 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Q 041804 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC-QPSVVTCNTVIKL 256 (403)
Q Consensus 181 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~ 256 (403)
+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..-++...+.-. .|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 345566777777777777777777652 33444444444556777777777777777665532 2333444444433
No 429
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.37 E-value=9.1 Score=32.57 Aligned_cols=87 Identities=15% Similarity=-0.081 Sum_probs=61.1
Q ss_pred HccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041804 42 GKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQ 121 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (403)
...|.++.|++.|......+ ++....|..-.+++.+.++...|++=+....+.++....-|-.--.+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34577888888887777765 4556666667777788888888888888777777665555655556666677887777
Q ss_pred HHHhccccc
Q 041804 122 ELCFGENKN 130 (403)
Q Consensus 122 ~~~~~~~~~ 130 (403)
..+....+.
T Consensus 203 ~dl~~a~kl 211 (377)
T KOG1308|consen 203 HDLALACKL 211 (377)
T ss_pred HHHHHHHhc
Confidence 776655543
No 430
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=52.16 E-value=78 Score=21.99 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcC
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG--KPWKAVKLYKEMKKKG 207 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 207 (403)
..++..|...++.++|...+.++.... -.......++..+...+ ..+.+..++..+...+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 445566777778888877777753221 12223333344333331 2233445555555554
No 431
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=51.96 E-value=78 Score=21.97 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc--CCHHHHHHHHHHHHHcCCC
Q 041804 181 SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS--EGVDFAMRVYREMREMGCQ 244 (403)
Q Consensus 181 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~ 244 (403)
..++.-|...++.++|...+.++... .--......++..+... ..-+.+..++..+.+.+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 44566677778888888777765322 11122333334433333 2234455566666655443
No 432
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.44 E-value=2.4e+02 Score=27.52 Aligned_cols=94 Identities=4% Similarity=-0.031 Sum_probs=55.7
Q ss_pred HHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCC------------CCHHHHHHHHHHHHh
Q 041804 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSI------------PNHATFRIMFKRYVT 79 (403)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~ 79 (403)
++..+.+..+....|+..+......++... .|+...++.+++++...+... .+......++.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 444455555444566777777776666554 588888888887765432111 12222333444433
Q ss_pred cCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 80 AHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
.++...++.+++++...|..-......|+
T Consensus 258 ~~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 48888899999998888876333333333
No 433
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.12 E-value=34 Score=30.77 Aligned_cols=87 Identities=16% Similarity=-0.021 Sum_probs=46.4
Q ss_pred HHHHccCChhHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 39 DILGKFFEFDLSWNLIHRMKDNPSSIPNHA-TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
.-+.+.+.++.|..++.+..+.. ||-. .|..-..++.+.+++..|+.=+.+..+..+.....|..-..++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 33445556666666666666543 4322 2333335555666666666666555555544444555555555555555
Q ss_pred HHHHHHHhccc
Q 041804 118 IEAQELCFGEN 128 (403)
Q Consensus 118 ~~a~~~~~~~~ 128 (403)
.+|+..|+...
T Consensus 89 ~~A~~~l~~~~ 99 (476)
T KOG0376|consen 89 KKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHhh
Confidence 66655555544
No 434
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.53 E-value=1.5e+02 Score=24.75 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=86.1
Q ss_pred ccCcchHHHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCcHH---HHHHHHHHHHHcCChhHHHHHHHHHHHc---CC-
Q 041804 137 VEMNKTKIYNMILRG-WFKMSWWGKCREFWEEMDKRGVVKDLH---SYSIYMDIMCKSGKPWKAVKLYKEMKKK---GI- 208 (403)
Q Consensus 137 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 208 (403)
+..|++..=|..-+. -.+..++++|+.-|++..+....-..+ +...++..+.+.+++++....|.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 556666554432222 123457889999999887753332333 4456788999999999999988887643 11
Q ss_pred -CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 209 -KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM-----GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 209 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
.-+..+.++++...+...+.+....+++.-.+. +-..--.|-.-|...|...+.+.+..++++++..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 224456777777777677766665555543322 0011112334566777777888888888877764
No 435
>PF13934 ELYS: Nuclear pore complex assembly
Probab=49.81 E-value=1.4e+02 Score=24.24 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=28.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 182 IYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
-++.++...|+.+.|+.+++...-. ..+......++.. ...+.+.+|..+-+...+
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCch
Confidence 4566666667777777666654322 1112222222333 445666666665554443
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.73 E-value=85 Score=29.87 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCH
Q 041804 319 MLLRKFGRWGFLRPVFVVWKKMEEL--GCSPDEFAYNALVDALIDKGML 365 (403)
Q Consensus 319 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 365 (403)
+|..+|...|++-++.++++.+..+ |-+.-...||..|+-+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4455555555555555555554432 2222233444445555555543
No 437
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=49.36 E-value=24 Score=18.20 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=14.0
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNHATFR 71 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 71 (403)
.++.|..+|++.... .|++.+|-
T Consensus 2 E~dRAR~IyeR~v~~---hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV---HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh---CCCchHHH
Confidence 356677777776663 36665553
No 438
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.20 E-value=68 Score=30.42 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHhchhcCCCCChhhHHHHHHh
Q 041804 261 GRVREAYAVLAEMPKKGCVPDVITYHCFFRC 291 (403)
Q Consensus 261 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 291 (403)
|++.+|.+.+-.+......|...-...+..+
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -------------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 6666666666666665555655444444443
No 439
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.94 E-value=89 Score=21.76 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 041804 316 TYVMLLRKFGRWGFLRPVFVVWKKMEE 342 (403)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 342 (403)
-|..|+..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 345555555555555555555555443
No 440
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.92 E-value=99 Score=22.27 Aligned_cols=43 Identities=19% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 041804 84 NEAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFG 126 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (403)
+....+|..|...++. -...|......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4467889999888876 666777888888889999999998863
No 441
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.33 E-value=27 Score=22.51 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 041804 356 VDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 356 ~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
++.+.++.-.++|+++++-|.++
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKr 60 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKR 60 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh
Confidence 33444444445555555555444
No 442
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.87 E-value=43 Score=30.17 Aligned_cols=105 Identities=11% Similarity=-0.006 Sum_probs=69.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHH
Q 041804 74 FKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWF 153 (403)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (403)
+..+...++++.|..++.+..+..+.....|..-..++.+.+++..|+.=+.++.+. .+-....|-.-..++.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------DPTYIKAYVRRGTAVM 83 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-------CchhhheeeeccHHHH
Confidence 345566789999999999999988776666766668888888888887766666553 1222333333334455
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041804 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187 (403)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (403)
+.+.+.+|...|+..... .|+..-...++.-|
T Consensus 84 ~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred hHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 556667777777666553 56655555555444
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.66 E-value=1.6e+02 Score=25.14 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------cCcHHHH
Q 041804 197 VKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCE----------NGRVREA 266 (403)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a 266 (403)
.++++.+.+.++.|.-+.+..+.-.+.+.=.+.....+++.+.. |..-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46788888889999999999888888888899999999999876 34446666666653 6889888
Q ss_pred HHHHHhch
Q 041804 267 YAVLAEMP 274 (403)
Q Consensus 267 ~~~~~~~~ 274 (403)
.++++.-.
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 88887643
No 444
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=47.56 E-value=1.3e+02 Score=23.11 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=12.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDV 212 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (403)
+..+...++.-.|.++++.+.+.+..++.
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~ 60 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKP 60 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCc
Confidence 33333333344444555554444433333
No 445
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.99 E-value=2.9e+02 Score=27.09 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=63.4
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHH----------HHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT----------FRIMFKRYVTAHLVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 99 (403)
...+...++-.|....+++..+++.+.+... ||..- |...++---+-|+-++|+...-.+.+...+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~ 275 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGP 275 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCC
Confidence 4556677777888889999999999998873 54321 222233333457788888887777665544
Q ss_pred -cHHHHHHHHHHHH---------hcCCHHHHHHHHhccccc
Q 041804 100 -DEVSYCNLVDALC---------EYKHVIEAQELCFGENKN 130 (403)
Q Consensus 100 -~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 130 (403)
.+..|....+.|. ..+..+.|.++|++.-+.
T Consensus 276 vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 276 VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 5555555444443 455677888888876543
No 446
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=46.98 E-value=1e+02 Score=21.87 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCC
Q 041804 230 FAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGC 278 (403)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 278 (403)
.+..++..+.+.|+--|.......+....+.+. .....+-.++...|+
T Consensus 10 ~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~-~G~~~I~~~L~~kGi 57 (121)
T PF02631_consen 10 AIEEVIDRLKELGYIDDERYAESYVRSRLRRKG-KGPRRIRQKLKQKGI 57 (121)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhccccc-ccHHHHHHHHHHHCC
Confidence 344555555555554444444444444443222 123334444444444
No 447
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.16 E-value=1.2e+02 Score=22.32 Aligned_cols=66 Identities=8% Similarity=-0.013 Sum_probs=32.3
Q ss_pred CchhhHHHHHHHHHhcC---CcchHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 312 PKMDTYVMLLRKFGRWG---FLRPVFVVWKKMEELGCSPD-EFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 312 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
++..+--.+.+++.+.. +..+.+.+++.+.+..-+.. ....-.|.-++.+.++++++.++.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444455555443 34455556666654221111 12222334456666666666666666665
No 448
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.76 E-value=94 Score=21.73 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcch
Q 041804 296 REILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRP 332 (403)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 332 (403)
-.|.++++.+.+.+..++..|.--.++.+...|-..+
T Consensus 17 ~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 17 LTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3466666666666555555555555666666665443
No 449
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.65 E-value=87 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=8.7
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHH
Q 041804 164 FWEEMDKRGVVKDLHSYSIYMDI 186 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~ 186 (403)
+|+-....|+..|...|.+++..
T Consensus 30 L~ELa~~AGv~~dp~VFriildL 52 (88)
T PF12926_consen 30 LYELAQLAGVPMDPEVFRIILDL 52 (88)
T ss_pred HHHHHHHhCCCcChHHHHHHHHH
Confidence 33333333333333333333333
No 450
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.52 E-value=73 Score=19.75 Aligned_cols=52 Identities=10% Similarity=0.177 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC
Q 041804 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK 115 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (403)
.|....++.++..++...-.+.++..+.+....|.-+..+|.--++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999999999988778888888887777643
No 451
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=45.34 E-value=3.1e+02 Score=26.90 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=24.5
Q ss_pred HHHHHHHHhch-hcCCCCChhhHHHHHHhh-CCHHHHHHHHHHHHH
Q 041804 264 REAYAVLAEMP-KKGCVPDVITYHCFFRCL-EKPREILGLFDRMIE 307 (403)
Q Consensus 264 ~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~-~~~~~a~~~~~~~~~ 307 (403)
++....+.... ..|+..+......++... |....++.+++.+..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444444433 345555666666666554 566677776666554
No 452
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.27 E-value=2.1e+02 Score=24.89 Aligned_cols=123 Identities=17% Similarity=0.112 Sum_probs=73.9
Q ss_pred HHHHHHHHHhchhcCCCCChhhHHHHHHhh---------CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchH
Q 041804 263 VREAYAVLAEMPKKGCVPDVITYHCFFRCL---------EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPV 333 (403)
Q Consensus 263 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 333 (403)
++++..++++....+. |.++.....|.++ .++.....+|+-+......| +++.|--+ +.++..-++.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHhH
Confidence 5566777777665554 7777777777765 23556667777777654443 23444333 33444456777
Q ss_pred HHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 041804 334 FVVWKKMEELGCSPDEFAYN-ALVDALIDKGMLDMARKYDEEMFAKGLSAKPREEL 388 (403)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 388 (403)
+.+.+-+...+--.+...|. .=...+.+.|+.++|...|++....--.+....++
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 77777766542112222333 33566788999999999999888754444444443
No 453
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=45.19 E-value=51 Score=27.96 Aligned_cols=83 Identities=7% Similarity=-0.035 Sum_probs=62.6
Q ss_pred CCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHhhcCCCcHHH
Q 041804 25 CHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRI-MFKRYVTAHLVNEAMGTFNKLDEFGLKDEVS 103 (403)
Q Consensus 25 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 103 (403)
..+..|+..|...+....+.+.+.+.-.+|.+..+.. |.|+..|-. .---+...++++.+..+|..-...++.++..
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 3456678889888888888899999999999998875 345555543 2233556789999999999999888777777
Q ss_pred HHHHHH
Q 041804 104 YCNLVD 109 (403)
Q Consensus 104 ~~~l~~ 109 (403)
|....+
T Consensus 179 w~eyfr 184 (435)
T COG5191 179 WIEYFR 184 (435)
T ss_pred HHHHHH
Confidence 765444
No 454
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.10 E-value=3e+02 Score=26.75 Aligned_cols=117 Identities=11% Similarity=-0.039 Sum_probs=69.0
Q ss_pred cCChhHHHHHHHHHHhCC-CCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 041804 155 MSWWGKCREFWEEMDKRG-VVKD--LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFA 231 (403)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 231 (403)
..+.+.|...+....... ..+. ...+..+.......+...++...+...... ..|......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 345578888888764433 2211 122334433333333255666666654433 22444455555666688888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 232 MRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
...+..|.... .-...-.--+.+++...|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888875532 2233344456777777899999999888864
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.06 E-value=2.3e+02 Score=25.45 Aligned_cols=106 Identities=11% Similarity=0.006 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccc-cccCc-----chHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-
Q 041804 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSG-LVEMN-----KTKIYNMILRGWFKMSWWGKCREFWEEMDKRG- 172 (403)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 172 (403)
+......++..+....++.+-.+..+.-.......+ .+..| .-.+.-.|++.++-.||+..|+++++.+.-..
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 555556666666666666665555444222111100 01111 22334567788888999999999988763211
Q ss_pred ------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 173 ------VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 173 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
..-...++-.+.=+|.-.+++.+|.+.|....-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345666777788888999999999887653
No 456
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=45.02 E-value=1.2e+02 Score=22.11 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=28.9
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHH
Q 041804 58 KDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYC 105 (403)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 105 (403)
.+.|...+|. .+..++--+...|+++.|+.+.+...+.|.+.+..|+
T Consensus 40 L~~g~g~qd~-Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~f~ 86 (132)
T PF05944_consen 40 LASGSGAQDD-VLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPDRFK 86 (132)
T ss_pred HHcCCCCcCc-hHHhhHhhhhcccCHHHHHHHHHHHHHcCCCcccccc
Confidence 3433334554 3334555567788888888888888888776444443
No 457
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.75 E-value=2.7e+02 Score=26.07 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=17.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh
Q 041804 72 IMFKRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 72 ~l~~~~~~~~~~~~a~~~~~~~~~ 95 (403)
.++.-|.+.+++++|+.++..|.-
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCc
Confidence 466677777777777777777654
No 458
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=44.70 E-value=54 Score=21.36 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=6.0
Q ss_pred HHHHHHHcCCCCC
Q 041804 371 YDEEMFAKGLSAK 383 (403)
Q Consensus 371 ~~~~m~~~~~~p~ 383 (403)
+++.+.+.|..|+
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 4444555555544
No 459
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.53 E-value=92 Score=20.62 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 198 KLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
++|+-....|+..|..+|..++....-.=.++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 78988889999999999999999988888888999999988754
No 460
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.51 E-value=3e+02 Score=26.55 Aligned_cols=96 Identities=9% Similarity=-0.003 Sum_probs=52.7
Q ss_pred HHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC------------HHHHHHHHHHHHh
Q 041804 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN------------HATFRIMFKRYVT 79 (403)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~ 79 (403)
++..+.+.......|+..+......++.. ..|+...++.++++....+....+ ......++.++ .
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL-~ 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL-A 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH-H
Confidence 44444444443345666666666666553 357888888877765433211122 22222333333 3
Q ss_pred cCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 80 AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
.|+...++.+++++.+.|..-...+..|+..
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~~~il~~l~~~ 293 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSAASTLEEMAAV 293 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4777888888888887776544444444443
No 461
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.27 E-value=2.1e+02 Score=24.80 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=22.6
Q ss_pred HcCChhHHHHHHHHHHHc---CCCCChhhH--HHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 189 KSGKPWKAVKLYKEMKKK---GIKMDVVAY--NTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
+.++.++|++.++++.+. .-.|+...| +...+++...||...+.+++++..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334455555555554433 112333322 2223333445555555555555544
No 462
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=44.22 E-value=87 Score=22.13 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041804 318 VMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 318 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34556666666677788888888777666666655455566666553
No 463
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.21 E-value=25 Score=30.09 Aligned_cols=92 Identities=10% Similarity=-0.141 Sum_probs=53.8
Q ss_pred hcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 041804 113 EYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (403)
..|.+++|...+...+. ..++....|.--.+++.+.+.+..|++=+....+.+.. +...|-.--.+....|+
T Consensus 126 n~G~~~~ai~~~t~ai~-------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE-------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGN 197 (377)
T ss_pred cCcchhhhhcccccccc-------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhc
Confidence 35667777776666555 33556666666666677777777777666666655333 22233333333444567
Q ss_pred hhHHHHHHHHHHHcCCCCCh
Q 041804 193 PWKAVKLYKEMKKKGIKMDV 212 (403)
Q Consensus 193 ~~~a~~~~~~~~~~~~~~~~ 212 (403)
+.+|-+.+....+.++.+..
T Consensus 198 ~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred hHHHHHHHHHHHhccccHHH
Confidence 77777777777666554433
No 464
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=44.13 E-value=4.1e+02 Score=27.96 Aligned_cols=133 Identities=10% Similarity=-0.016 Sum_probs=83.2
Q ss_pred ccCcchHHHHHHHHHHHhcCChhHHHHHHHHH-------HhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---
Q 041804 137 VEMNKTKIYNMILRGWFKMSWWGKCREFWEEM-------DKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK--- 206 (403)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 206 (403)
..++....|..+...+.+.++.++|...=... ...+..-+...|..+.-.+...++...|...+.+....
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 44566677888999999999999988764432 22222224455666666666777888888777766543
Q ss_pred --C--CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC-----C--CCCHHHHHHHHHHHHhcCcHHHHHHH
Q 041804 207 --G--IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG-----C--QPSVVTCNTVIKLLCENGRVREAYAV 269 (403)
Q Consensus 207 --~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (403)
| -+|...+++.+-..+...++.+.|.++++.+.... . -.+..++..+.+.+...+++..|...
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 1 13333344444444455688889999888887531 1 12445666666666666666665543
No 465
>PHA03100 ankyrin repeat protein; Provisional
Probab=44.03 E-value=2.2e+02 Score=26.20 Aligned_cols=10 Identities=10% Similarity=0.095 Sum_probs=4.3
Q ss_pred HHHHHHHcCC
Q 041804 371 YDEEMFAKGL 380 (403)
Q Consensus 371 ~~~~m~~~~~ 380 (403)
+++.+.+.|.
T Consensus 298 iv~~Ll~~g~ 307 (480)
T PHA03100 298 IFKLLLNNGP 307 (480)
T ss_pred HHHHHHhcCC
Confidence 3444444443
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.65 E-value=2e+02 Score=24.40 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=57.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHH
Q 041804 218 VIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPRE 297 (403)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 297 (403)
++....+..+.......+..+.. ...-...++.....|++..|++++.+..+.- -...-|+++=.--.+.++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~~~L~e 175 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLSSQLQE 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHhHHHHH
Confidence 33444444444444444444432 2333445666778888888888888766430 011111111111122333
Q ss_pred HHHHHHHHHHc-----CCCCchhhHHHHHHHHHhcCCcchHHHH
Q 041804 298 ILGLFDRMIES-----GIRPKMDTYVMLLRKFGRWGFLRPVFVV 336 (403)
Q Consensus 298 a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~ 336 (403)
-....+.+.+. -...|+..|..+..+|.-.|+...+.+-
T Consensus 176 ~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 176 TLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33333333221 1135778899999999988877665543
No 467
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=43.64 E-value=1.8e+02 Score=23.80 Aligned_cols=126 Identities=13% Similarity=0.142 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS 225 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 225 (403)
...+..|.+.-++.-|....+++.+ ...+-.+++ -|.+..+.+--.++.+-....+++-+......++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 3344555555555555544444433 111222222 2333333332333333333334444444444333 2345
Q ss_pred CCHHHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC
Q 041804 226 EGVDFAMRVYREMREM-G-----------CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP 280 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 280 (403)
||..+|+.-++.-... | -.|.+.....++..| ..+++++|.+++.++-+.|..|
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCH
Confidence 6666666555543321 1 123333334444333 2334555555555555544444
No 468
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.63 E-value=2.2e+02 Score=24.43 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHH---------HhhcCCC-c--HHHHHHHH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH-----LVNEAMGTFNK---------LDEFGLK-D--EVSYCNLV 108 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~---------~~~~~~~-~--~~~~~~l~ 108 (403)
++..+++++..+.... ++...|..++..+.... ..+.....|+. +.+.|.. . .......+
T Consensus 55 ~~~~~l~l~~~~~~~E---~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l 131 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNE---TDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLL 131 (324)
T ss_dssp -HHHHHHHHGGG-GT-----SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHH
T ss_pred CHHHHHHHHHHhccCC---CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHH
Q ss_pred HHH-HhcCC-----HHHHHHHHhccccccccccccc---CcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH
Q 041804 109 DAL-CEYKH-----VIEAQELCFGENKNVGFSGLVE---MNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS 179 (403)
Q Consensus 109 ~~~-~~~~~-----~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 179 (403)
+.. ....- ...|.+.|....... .. ..+......++....+.|+.+.-..+++..... ++..-
T Consensus 132 r~~~~~~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~ 203 (324)
T PF11838_consen 132 RALLLSLACGDPECVAEARELFKAWLDGN-----DSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEE 203 (324)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHHTT-----T-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhcCC-----cccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHH
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH-hhcCCHHHHHHHHHH
Q 041804 180 YSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV-GVSEGVDFAMRVYRE 237 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~ 237 (403)
...++.+++...+.+...++++.....+..++......+.... ......+.+...+..
T Consensus 204 k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 204 KRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 469
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.68 E-value=2.9e+02 Score=25.53 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=73.4
Q ss_pred HHHHHhcCCHHHHHHHHhcccccc--cccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHh-------CCCCCcH-
Q 041804 108 VDALCEYKHVIEAQELCFGENKNV--GFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDK-------RGVVKDL- 177 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~- 177 (403)
-+.+.-.|++.+|.+++...--.. +....+.-.+-..||.|.-.+.+.|.+..+..+|....+ .|+.|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 344556789999998876543321 111111111333457777777778888777777766653 4544422
Q ss_pred ----------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 041804 178 ----------HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGV 224 (403)
Q Consensus 178 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 224 (403)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|--+..+|..
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2233 233567889999999999988776 56688899989888853
No 470
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.64 E-value=1.6e+02 Score=23.27 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 315 DTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEF-AYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 315 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
...+.++..|...||++.|-++|.-+.+.. +.|.. .|..=+..+.+.+......++++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 456778888888999999999998887753 34443 455556667776666555566666644
No 471
>PRK09857 putative transposase; Provisional
Probab=41.10 E-value=2.3e+02 Score=24.19 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041804 294 KPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDE 373 (403)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 373 (403)
+..+....+..+......++.. +..+++...+.++.++..++++.+.+. .++......++..-+.+.|.-+++.++..
T Consensus 187 dl~~~~~~l~~ll~~~~~~~~~-~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~ 264 (292)
T PRK09857 187 DLMGLVEQMACLLSSGYANDRQ-IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAK 264 (292)
T ss_pred hHHHHHHHHHHHHHhccCCHHH-HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCCCChhhHHH
Q 041804 374 EMFAKGLSAKPREELG 389 (403)
Q Consensus 374 ~m~~~~~~p~~~~~~~ 389 (403)
+|...|+.++....+.
T Consensus 265 ~ml~~g~~~~~I~~~T 280 (292)
T PRK09857 265 IMLESGVPLADIMRFT 280 (292)
T ss_pred HHHHcCCCHHHHHHHh
No 472
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.96 E-value=1.5e+02 Score=22.03 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCc
Q 041804 295 PREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFL 330 (403)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 330 (403)
.-.|.++++.+.+.+...+..|.---+..+...|-+
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566666666555555555544445555555544
No 473
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.90 E-value=1.6e+02 Score=22.50 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcch
Q 041804 294 KPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRP 332 (403)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 332 (403)
+.-.|.++++.+.+.+..++..|.---+..+...|-+.+
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 334567777777776666666665556666666665544
No 474
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.78 E-value=1e+02 Score=21.51 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (403)
......+..-.|.++++.+.+.+..++..|..-.++.+...|-
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333334445556666666655555555554444555555443
No 475
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=40.64 E-value=3.8e+02 Score=26.61 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=41.9
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 041804 325 GRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPREE 387 (403)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 387 (403)
...++.+.++.+|+.....|...-...|-..++.=...|+...+..+++.....-..|+....
T Consensus 473 sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~e 535 (881)
T KOG0128|consen 473 SLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALE 535 (881)
T ss_pred HHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHH
Confidence 345788889999888876652222225666666666678888888888777776666654433
No 476
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.47 E-value=2.2e+02 Score=23.33 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=65.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-C-----------CCCChhhHHHH
Q 041804 151 GWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-G-----------IKMDVVAYNTV 218 (403)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l 218 (403)
-|.+..+..--.++.+-....++.-+.....+++ +...|+..+|+.-++.-... | -.|.+.....+
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 3445544444455555555566655555555554 45678888888877665432 2 24566666667
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041804 219 IRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKL 256 (403)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (403)
+..| ..+++++|.+++.++-+.|+.|... .+.+.+.
T Consensus 246 l~~~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 246 LQAC-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred HHHH-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 7665 5688999999999999999886543 3334443
No 477
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.46 E-value=2.4e+02 Score=23.74 Aligned_cols=84 Identities=21% Similarity=0.148 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh----hc
Q 041804 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG-------KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVG----VS 225 (403)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 225 (403)
+..+|..+|++..+.|..+...+...+...|..-. +...|...|.+.-..+ +......+...|. -.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 56667777777766665532222333333333221 2235677777766665 3333333333332 23
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 041804 226 EGVDFAMRVYREMREMGC 243 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~ 243 (403)
.+..+|...|....+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 466777777777776654
No 478
>PHA02798 ankyrin-like protein; Provisional
Probab=38.32 E-value=3.3e+02 Score=25.27 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCCCCC
Q 041804 231 AMRVYREMREMGCQPS 246 (403)
Q Consensus 231 a~~~~~~~~~~~~~~~ 246 (403)
..++.+.+.+.|..++
T Consensus 88 ~~~iv~~Ll~~GadiN 103 (489)
T PHA02798 88 MLDIVKILIENGADIN 103 (489)
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3566666667666554
No 479
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.26 E-value=1.3e+02 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=11.5
Q ss_pred HHHHhcCCcchHHHHHHHHHhcC
Q 041804 322 RKFGRWGFLRPVFVVWKKMEELG 344 (403)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~~ 344 (403)
..+-++...++|+++++-|.++|
T Consensus 69 D~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33344445555555555555544
No 480
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.20 E-value=1.4e+02 Score=20.87 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhH
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGK 160 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (403)
...++|..+.+.+...+.....+--+-+..+.+.|++++|+..- .. ...||...|.+|. -.+.|--++
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~---~~-------~~~pdL~p~~AL~--a~klGL~~~ 87 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLP---QC-------HCYPDLEPWAALC--AWKLGLASA 87 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHH---TT-------S--GGGHHHHHHH--HHHCT-HHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhc---cc-------CCCccHHHHHHHH--HHhhccHHH
Confidence 45567777777777665544444444455566777777773221 11 2346666555543 345666666
Q ss_pred HHHHHHHHHhCC
Q 041804 161 CREFWEEMDKRG 172 (403)
Q Consensus 161 a~~~~~~~~~~~ 172 (403)
+...+.++...|
T Consensus 88 ~e~~l~rla~~g 99 (116)
T PF09477_consen 88 LESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHCT-S
T ss_pred HHHHHHHHHhCC
Confidence 666666665543
No 481
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.00 E-value=2.4e+02 Score=23.59 Aligned_cols=134 Identities=7% Similarity=-0.080 Sum_probs=74.4
Q ss_pred HHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 39 DILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT-AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
.++.+....+.|+++.+.....+ +.+-..|+---..+-. ..+..+-++.++++.+..+++-..|..-=......|++
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lN--pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLN--PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP 128 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhC--cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence 34556666777777777777755 2232333322221111 12466667777777777777666665433333334444
Q ss_pred H-HHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 041804 118 I-EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182 (403)
Q Consensus 118 ~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (403)
. .-+.+...+.. ....+-.+|..---++...+.++.=+.+-.++.+.++. +-.+||.
T Consensus 129 s~rELef~~~~l~-------~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~ 186 (318)
T KOG0530|consen 129 SFRELEFTKLMLD-------DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQ 186 (318)
T ss_pred ccchHHHHHHHHh-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhhe
Confidence 4 33344444444 33455566666556666666777777777777776655 4445554
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.89 E-value=4.1e+02 Score=26.18 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH----------HHHHHHHHHHcCChhHHHHHHHHHHHc--CC
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHS----------YSIYMDIMCKSGKPWKAVKLYKEMKKK--GI 208 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 208 (403)
...+...++-.|....+++...++.+.+... ||..- |...++---+-|+.++|+...-.+.+. .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 3344556666677777777777777777654 33211 222222222345666666666655554 24
Q ss_pred CCCh
Q 041804 209 KMDV 212 (403)
Q Consensus 209 ~~~~ 212 (403)
.||.
T Consensus 277 apDm 280 (1226)
T KOG4279|consen 277 APDM 280 (1226)
T ss_pred CCce
Confidence 4544
No 483
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.41 E-value=1e+02 Score=21.78 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=22.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG 191 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (403)
.++......+..-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 444444555555566666666666655555554444444444444
No 484
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.33 E-value=2.8e+02 Score=24.14 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC---CCCCcHHHH--HHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCChh-h
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKR---GVVKDLHSY--SIYMDIMCKSGKPWKAVKLYKEMKK-----KGIKMDVV-A 214 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~-~ 214 (403)
..++...-+.++.++|.++++++.+. .-.|+...| ..+..++...|+..++.+++++..+ .+++|+.+ .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34445555667899999999988653 234455554 4456677789999999999999887 57777655 3
Q ss_pred HHHHHHHH-hhcCCHH
Q 041804 215 YNTVIRAV-GVSEGVD 229 (403)
Q Consensus 215 ~~~ll~~~-~~~~~~~ 229 (403)
|..+-.-| -..|++.
T Consensus 159 fY~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 44444333 3344443
No 485
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=36.56 E-value=2.4e+02 Score=23.19 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------------C------------CCh
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI-------------K------------MDV 212 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~------------~~~ 212 (403)
.++|..+++.-... ..+..+...+..++...|+...+..+++.+..... . .++
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 34555555544222 23655555555666677777888888877754310 0 012
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 213 VAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 213 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
.+-.-.+-++.+.++.+.+..+.+.+.+.
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 23333344455557777777777777764
No 486
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=36.02 E-value=33 Score=21.05 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=17.7
Q ss_pred ChhHHHHHHHHhhhCCCCCCCH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNH 67 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~ 67 (403)
+++.|...|.++...+.++|+.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 7899999999999877666654
No 487
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.73 E-value=2.5e+02 Score=23.04 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh-
Q 041804 215 YNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLL-CENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL- 292 (403)
Q Consensus 215 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~- 292 (403)
...+++.+-..++++++...++.+.+.+...+..--+.+-.+| ...|....+++++..+....-.-.......++..+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCc-----------------chHHHHHHHHHhc---CCCCC
Q 041804 293 ----EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFL-----------------RPVFVVWKKMEEL---GCSPD 348 (403)
Q Consensus 293 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----------------~~a~~~~~~~~~~---~~~~~ 348 (403)
......-.=+-.+++..+-|...+-.+.+-.+--.||+ +.|.+.|++..+. .++|.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Q ss_pred HHHHHHHHHHHH-----hcCCHHHHHHHHHHHHH
Q 041804 349 EFAYNALVDALI-----DKGMLDMARKYDEEMFA 377 (403)
Q Consensus 349 ~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~ 377 (403)
..++-.++--|+ ..|+.++|.++.++..+
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 488
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.70 E-value=2.5e+02 Score=23.19 Aligned_cols=96 Identities=8% Similarity=-0.076 Sum_probs=69.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhh-------hCCCCCCCHH-----------HHHHHHHHHHhcCChHHHHHHHHHHh
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMK-------DNPSSIPNHA-----------TFRIMFKRYVTAHLVNEAMGTFNKLD 94 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~ 94 (403)
+...-.+-+.+.|++.+|..-|.+.. -.. +|... .+...-.++...|++-++++.-.++.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkE--kP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKE--KPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhcc--CCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444555677888888877766432 111 34333 23344456677899999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 95 EFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
...+.+..+|..-.++.+..-+..+|..=|......
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 998889999999999999999999998887776653
No 489
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.57 E-value=1.8e+02 Score=21.53 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=28.5
Q ss_pred HHHcCCCCChhhHHHHHHHHhhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 041804 203 MKKKGIKMDVVAYNTVIRAVGVS-EGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGR 262 (403)
Q Consensus 203 ~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (403)
+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 33445544332 22333333332 3455666666666666555455544444555555443
No 490
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.50 E-value=2.2e+02 Score=22.49 Aligned_cols=64 Identities=19% Similarity=0.090 Sum_probs=43.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 041804 320 LLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPR 385 (403)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 385 (403)
|.+.....|.+++|...++...+.++ .......-.+++...|+-++|+.-|++....+-.|...
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAR 195 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHH
Confidence 34556778888888888887665542 22333444678888888888888888888877444333
No 491
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.34 E-value=3.8e+02 Score=25.11 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHH-HcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHH------------HHHHHHHHH
Q 041804 294 KPREILGLFDRMI-ESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFA------------YNALVDALI 360 (403)
Q Consensus 294 ~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------------~~~l~~~~~ 360 (403)
..++...++.... ..|+..+......++.... |+...|...++++...+-..+... ...+++++.
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~ 253 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLAD--GAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALA 253 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC
Q 041804 361 DKGMLDMARKYDEEMFAKGLSA 382 (403)
Q Consensus 361 ~~g~~~~a~~~~~~m~~~~~~p 382 (403)
. ++.++|..+++++...|..|
T Consensus 254 ~-~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 254 Q-GDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred c-CCHHHHHHHHHHHHHcCCCH
No 492
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.85 E-value=4.3e+02 Score=25.56 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 041804 363 GMLDMARKYDEEMFAKGLSA 382 (403)
Q Consensus 363 g~~~~a~~~~~~m~~~~~~p 382 (403)
|+...++.+++++...|..|
T Consensus 264 ~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555555544
No 493
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=2.9e+02 Score=23.49 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHcC--------CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 041804 199 LYKEMKKKG--------IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM-GCQPSVVTCNTVIKLLCENGRVREAYAV 269 (403)
Q Consensus 199 ~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~ 269 (403)
+|+-+.+.| ++.|..-++.++.- +..++++-.+-+++..+. |-.--...+..+...|++.++.+.+.+.
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHhchhc----CCCCChhhHHHHHHhh-CC---HHHHHHHHHHHHHcCCCCchhhHHHHHHH--HHhcCCcchHHHHHHH
Q 041804 270 LAEMPKK----GCVPDVITYHCFFRCL-EK---PREILGLFDRMIESGIRPKMDTYVMLLRK--FGRWGFLRPVFVVWKK 339 (403)
Q Consensus 270 ~~~~~~~----~~~p~~~~~~~l~~~~-~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 339 (403)
..+..+. |.+.|.....+-+.-. ++ .++.++..+.|.+.|-..+...---.-.+ +....++.+|-.++-.
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC
Q 041804 340 MEELGCSPDEFAYNALVDALIDKG 363 (403)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g 363 (403)
....--......|...+....-+|
T Consensus 218 ~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 218 ILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HhccccccccccHHHHHHHHHHhh
No 494
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.58 E-value=3.8e+02 Score=24.84 Aligned_cols=108 Identities=10% Similarity=-0.041 Sum_probs=71.0
Q ss_pred HHHHhcCChhHHHHHHHHH---HhCCC--CC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHH-------cCCCCCh--
Q 041804 150 RGWFKMSWWGKCREFWEEM---DKRGV--VK---DLHSYSIYMDIMCKSGKPWKAVKLYKEMKK-------KGIKMDV-- 212 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~---~~~~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 212 (403)
..+.-.|++.+|.+++... ...|. .| .-..||.|.-.+.+.|.+..+..+|....+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4566789999999887654 22231 11 122346666666777777777777766653 3555432
Q ss_pred ---------hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 041804 213 ---------VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCE 259 (403)
Q Consensus 213 ---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 259 (403)
.+|| .--.|...|++-.|.+.|.+.... +..++..|-.|..+|.-
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1232 223456789999999999988765 45688899888888874
No 495
>PHA03100 ankyrin repeat protein; Provisional
Probab=34.28 E-value=3.7e+02 Score=24.69 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=6.5
Q ss_pred HhcCCHHHHHHHHh
Q 041804 112 CEYKHVIEAQELCF 125 (403)
Q Consensus 112 ~~~~~~~~a~~~~~ 125 (403)
++.|+.+-...+++
T Consensus 43 ~~~~~~~ivk~Ll~ 56 (480)
T PHA03100 43 KEARNIDVVKILLD 56 (480)
T ss_pred hccCCHHHHHHHHH
Confidence 44455554444443
No 496
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.23 E-value=2.9e+02 Score=23.47 Aligned_cols=111 Identities=16% Similarity=0.085 Sum_probs=57.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSE 226 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 226 (403)
.++..+.+..+.....+.+..+. ....-...+..+...|++..|++++.+..+.- . +..-|+.+=.. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hH
Confidence 34455555555566666666554 33344556667778888888888887766541 0 10111111000 11
Q ss_pred CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 041804 227 GVDFAMRVYREMREM-----GCQPSVVTCNTVIKLLCENGRVREAYA 268 (403)
Q Consensus 227 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~ 268 (403)
++++.......+.+. -...|+..|..+..+|.-.|+...+.+
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 222222222222221 113577778888888877776655543
No 497
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.11 E-value=3.3e+02 Score=24.02 Aligned_cols=54 Identities=7% Similarity=-0.092 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCC----CcHHHHHHHHHHHHhcCCHHHHHHH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGL----KDEVSYCNLVDALCEYKHVIEAQEL 123 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 123 (403)
.+.+..++.+.+.+...+++..+....-. .-......++..|.+.+++..+...
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ 162 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPY 162 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCc
Confidence 44455555555555444443333322211 1223444556666666665544433
No 498
>PHA02798 ankyrin-like protein; Provisional
Probab=33.80 E-value=3.9e+02 Score=24.79 Aligned_cols=117 Identities=12% Similarity=0.111 Sum_probs=55.2
Q ss_pred HHHHHHhchhcCCCCChh---hHHHHHHhhCC-HHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCCcchHHHHHHH
Q 041804 266 AYAVLAEMPKKGCVPDVI---TYHCFFRCLEK-PREILGLFDRMIESGIRPKMDT--YVMLLRKFGRWGFLRPVFVVWKK 339 (403)
Q Consensus 266 a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 339 (403)
..++.+.+.+.|..++.. -.+.+..++.. .-...++.+.+.+.|..++... -.+.+..+.+.|. ..-.++.+.
T Consensus 88 ~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~vv~~ 166 (489)
T PHA02798 88 MLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIEIIKL 166 (489)
T ss_pred HHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC-cchHHHHHH
Confidence 356666677777665432 23334333321 1124566677777787665432 1233444445444 123345555
Q ss_pred HHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 041804 340 MEELGCSPDEF----AYNALVDALIDKGMLDMARKYDEEMFAKGLSAKP 384 (403)
Q Consensus 340 ~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 384 (403)
+.+.|..++.. -++.+ ..+.+.+-...-.++++.+.+.|..++.
T Consensus 167 Ll~~gadin~~~~~~~~t~L-h~~~~~~~~~~~~~ivk~Li~~Ga~i~~ 214 (489)
T PHA02798 167 LLEKGVDINTHNNKEKYDTL-HCYFKYNIDRIDADILKLFVDNGFIINK 214 (489)
T ss_pred HHHhCCCcccccCcCCCcHH-HHHHHhccccCCHHHHHHHHHCCCCccc
Confidence 66666655432 12222 2222221111113466666777765543
No 499
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.53 E-value=1.7e+02 Score=20.56 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=12.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCC
Q 041804 74 FKRYVTAHLVNEAMGTFNKLDEFGL 98 (403)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~~ 98 (403)
++.+-++...++|+++.+.|.+.|-
T Consensus 68 iD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 3334444555555555555555553
No 500
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.39 E-value=4e+02 Score=24.76 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChh
Q 041804 246 SVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVI 283 (403)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 283 (403)
+...+..++.+....+....|+.++.++.+.|..|...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 44445556665555555567888888888777666533
Done!